Citrus Sinensis ID: 022417
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 297 | 2.2.26 [Sep-21-2011] | |||||||
| Q6A070 | 1759 | Protein FAM179B OS=Mus mu | yes | no | 0.589 | 0.099 | 0.302 | 5e-11 | |
| Q9Y4F4 | 1720 | Protein FAM179B OS=Homo s | yes | no | 0.417 | 0.072 | 0.328 | 8e-11 | |
| Q3TYG6 | 1002 | Protein FAM179A OS=Mus mu | no | no | 0.538 | 0.159 | 0.303 | 2e-10 | |
| Q6ZUX3 | 1019 | Protein FAM179A OS=Homo s | no | no | 0.693 | 0.202 | 0.278 | 7e-09 |
| >sp|Q6A070|F179B_MOUSE Protein FAM179B OS=Mus musculus GN=Fam179b PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 10/185 (5%)
Query: 77 LDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDI 136
L +DW E LN R A HS LL L + VV+ +KN RS + + +++ D+
Sbjct: 1269 LADEDWEKKMEGLNFVRCLAAFHSDLLNTKLHETTFAVVQEVKNLRSGVSRAAVVCLGDL 1328
Query: 137 FSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKL-K 195
F+ L S LD+ V LL KA + F+ E+ D+AL MV ++TP + L
Sbjct: 1329 FTY----LKKSMDQELDSAVRALLHKAGESNTFIREDVDKALKAMVNNVTPARAVTSLIN 1384
Query: 196 TYVKHTNPRIRAKAAISISICVTKMGLE----GMKELGLVSLVQVAAGLLNDRLPEAREA 251
H + +R A ++ V M E G K++ L+ AA D E R
Sbjct: 1385 GGQSHLHIAVRRCTAQHLADVVECMDPERISSGTKDMA-DRLLPAAAKFAQDSSQETRYY 1443
Query: 252 ARSMV 256
R M+
Sbjct: 1444 GRKML 1448
|
Mus musculus (taxid: 10090) |
| >sp|Q9Y4F4|F179B_HUMAN Protein FAM179B OS=Homo sapiens GN=FAM179B PE=1 SV=4 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 4/128 (3%)
Query: 60 LKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK 119
L+ PE + + L +DW E LN R A HS +L L + VV+ +K
Sbjct: 1249 LRPFSKPEIALTEALRLLADEDWEKKIEGLNFIRCLAAFHSEILNTKLHETNFAVVQEVK 1308
Query: 120 NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALN 179
N RS + + +++ SD+F+ L S LD V LL KA + F+ E+ D+AL
Sbjct: 1309 NLRSGVSRAAVVCLSDLFTY----LKKSMDQELDTTVKVLLHKAGESNTFIREDVDKALR 1364
Query: 180 TMVESITP 187
MV ++TP
Sbjct: 1365 AMVNNVTP 1372
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Homo sapiens (taxid: 9606) |
| >sp|Q3TYG6|F179A_MOUSE Protein FAM179A OS=Mus musculus GN=Fam179a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 5/165 (3%)
Query: 60 LKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK 119
L+ +PE + ++ L+S DW + L N +R A HS +L L V V +
Sbjct: 483 LRPFSNPELGLTDALQCLNSNDWQMKEKGLVNIQRLAACHSEVLGTRLHDVSLAVTAEVT 542
Query: 120 NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALN 179
N RS + + +I D+F K +D + + +V LL K +F+ A+RAL
Sbjct: 543 NLRSKVSRLAISTLGDLFRVL-KKNMDQEA---EEIVRCLLQKMGNTSEFIQRAANRALG 598
Query: 180 TMVESITPLPLLQKLKT-YVKHTNPRIRAKAAISISICVTKMGLE 223
MVE++TP L L + V H NP +R A +S + ++G E
Sbjct: 599 AMVENVTPARALVALTSAGVYHRNPLVRKCTAKHLSAVLEQIGAE 643
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Mus musculus (taxid: 10090) |
| >sp|Q6ZUX3|F179A_HUMAN Protein FAM179A OS=Homo sapiens GN=FAM179A PE=2 SV=2 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 17/223 (7%)
Query: 52 IDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVM 111
+D + L+ +PE + ++ L+S DW + L + +R A HS +L L V
Sbjct: 474 MDLRACKELRPFSNPELGLRDALQCLNSSDWQMKEKGLVSIQRLAACHSEVLTGKLHDVC 533
Query: 112 AVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVC 171
VV + N RS + +I D+F A K +D ++ + +LQ K + +F+
Sbjct: 534 LVVTGEVTNLRSKVSHLAISTLGDLFQAL-KKNMDQEAEEIARCLLQ---KMADTNEFIQ 589
Query: 172 EEADRALNTMVESIT---PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228
A ++L MVE++T L +L Y H NP IR AA +S + ++G E +
Sbjct: 590 RAAGQSLRAMVENVTLARSLVVLTSAGVY--HRNPLIRKYAAEHLSAVLEQIGAEKLLSG 647
Query: 229 GLVS---LVQVAAGLLNDRLPEAREAARSMV-----NSMYNAF 263
S LV L D + R R MV N+ ++AF
Sbjct: 648 TRDSTDMLVHNLVRLAQDSNQDTRFYGRKMVNILMANTKFDAF 690
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Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 297 | ||||||
| 359477401 | 297 | PREDICTED: protein FAM179B-like [Vitis v | 0.996 | 0.996 | 0.755 | 1e-126 | |
| 255551757 | 297 | clasp, putative [Ricinus communis] gi|22 | 1.0 | 1.0 | 0.737 | 1e-120 | |
| 224108123 | 298 | predicted protein [Populus trichocarpa] | 0.993 | 0.989 | 0.754 | 1e-112 | |
| 449432852 | 293 | PREDICTED: protein FAM179B-like [Cucumis | 0.976 | 0.989 | 0.693 | 1e-110 | |
| 449513357 | 293 | PREDICTED: protein FAM179B-like [Cucumis | 0.976 | 0.989 | 0.693 | 1e-110 | |
| 224114958 | 295 | predicted protein [Populus trichocarpa] | 0.983 | 0.989 | 0.750 | 1e-109 | |
| 224114942 | 284 | predicted protein [Populus trichocarpa] | 0.946 | 0.989 | 0.694 | 1e-106 | |
| 356529571 | 298 | PREDICTED: uncharacterized protein LOC10 | 0.989 | 0.986 | 0.662 | 1e-103 | |
| 224107133 | 286 | predicted protein [Populus trichocarpa] | 0.949 | 0.986 | 0.677 | 6e-99 | |
| 297800586 | 296 | hypothetical protein ARALYDRAFT_493301 [ | 0.976 | 0.979 | 0.607 | 3e-94 |
| >gi|359477401|ref|XP_003631973.1| PREDICTED: protein FAM179B-like [Vitis vinifera] gi|297736855|emb|CBI26056.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/298 (75%), Positives = 255/298 (85%), Gaps = 2/298 (0%)
Query: 1 MALRPIDNALPITTPERPKKQVKFAAPVQKQPDLSVNDENKASFPPSADAFIDYIPSENL 60
MALR +DNALP TTPERPKKQ K A +QKQ D VNDENKA PP+ADA IDYI SENL
Sbjct: 1 MALRSLDNALP-TTPERPKKQAKVAVSIQKQSDFGVNDENKAPLPPTADATIDYISSENL 59
Query: 61 KAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKN 120
KA+PDPE+ I L EGLDSKDW VCESLN+ARRFAL+HS+L+ P LEKV+ V+VKAMKN
Sbjct: 60 KAMPDPETQITGLTEGLDSKDWAKVCESLNDARRFALYHSALMAPILEKVLLVLVKAMKN 119
Query: 121 PRSALCKTSIMAASDIFSAFGDKLLDST-SDALDNLVLQLLMKASQDKKFVCEEADRALN 179
PRSAL KTSIMA++DIF+ FGD+LL T SDA D+++LQLL+KASQDKKFVCEEAD+AL
Sbjct: 120 PRSALSKTSIMASTDIFNTFGDELLQPTNSDAFDHMLLQLLLKASQDKKFVCEEADKALK 179
Query: 180 TMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAG 239
MV S+TPLPLLQKL+ YV H N RIRAKAAISIS CV+KMGLEGMKE GLVSLVQ+AA
Sbjct: 180 AMVGSMTPLPLLQKLQAYVNHANLRIRAKAAISISHCVSKMGLEGMKEFGLVSLVQIAAE 239
Query: 240 LLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKIITSQ 297
LLNDRLPEAREAARS V S+Y+AFTENEE KQE+WQ+FCQSNL P+ AQSMVKII+SQ
Sbjct: 240 LLNDRLPEAREAARSTVISIYDAFTENEEQKQESWQNFCQSNLTPLHAQSMVKIISSQ 297
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551757|ref|XP_002516924.1| clasp, putative [Ricinus communis] gi|223544012|gb|EEF45538.1| clasp, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 219/297 (73%), Positives = 248/297 (83%)
Query: 1 MALRPIDNALPITTPERPKKQVKFAAPVQKQPDLSVNDENKASFPPSADAFIDYIPSENL 60
MALRPIDNALP+ TPERPKKQ K A +QKQ + VNDEN+A P S DA IDYI SENL
Sbjct: 1 MALRPIDNALPVITPERPKKQPKVAVSIQKQVEFGVNDENRAPLPLSTDAVIDYISSENL 60
Query: 61 KAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKN 120
K +PDPE I LIEGL+SKDWT VCESLNNARRFALHHSSLL P LEK+M VVVKAMKN
Sbjct: 61 KPMPDPEFKIQGLIEGLESKDWTKVCESLNNARRFALHHSSLLLPILEKIMLVVVKAMKN 120
Query: 121 PRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNT 180
PRSALCKTSIMA+SDIFSAFGDKLLDST DA DNL+LQLL+KASQDK+FVCEEADRALN
Sbjct: 121 PRSALCKTSIMASSDIFSAFGDKLLDSTIDAFDNLLLQLLLKASQDKRFVCEEADRALNA 180
Query: 181 MVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGL 240
MV+S+ PLPLL KL++YV H N R+RAK AI IS C + M LEGMK+ GLV LVQVAA L
Sbjct: 181 MVKSMAPLPLLHKLRSYVSHVNLRVRAKVAICISNCASNMDLEGMKKFGLVLLVQVAANL 240
Query: 241 LNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKIITSQ 297
LNDRLPEAREAAR++V S+Y A+T+NEE K+E+W +FCQSNL I AQS+ KI ++Q
Sbjct: 241 LNDRLPEAREAARNIVTSIYEAYTKNEELKEESWHNFCQSNLSAIHAQSVAKITSAQ 297
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224108123|ref|XP_002333428.1| predicted protein [Populus trichocarpa] gi|222836622|gb|EEE75015.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/297 (75%), Positives = 250/297 (84%), Gaps = 2/297 (0%)
Query: 1 MALRPIDNALPITTPERPKKQVKFAA-PVQKQPDLSVNDENKASFPPSADAFIDYIPSEN 59
MALRPIDN+LP+ PERPKK VK + P+QKQ ++ VNDENKA PPS D+ IDYI S++
Sbjct: 1 MALRPIDNSLPVA-PERPKKHVKVVSVPIQKQSEVGVNDENKAPLPPSTDSTIDYISSDD 59
Query: 60 LKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK 119
LK I DPES I LIE LDSKDWT VCESLNNARRFAL+HSSLL P LEKVM+VVVKAMK
Sbjct: 60 LKPISDPESKIQGLIERLDSKDWTKVCESLNNARRFALYHSSLLLPFLEKVMSVVVKAMK 119
Query: 120 NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALN 179
NPRSAL KTSIMA+SDIF AFGD+LLDSTSDA D+L+LQLL+KASQDKKFVCEEADRALN
Sbjct: 120 NPRSALIKTSIMASSDIFYAFGDQLLDSTSDAFDSLLLQLLLKASQDKKFVCEEADRALN 179
Query: 180 TMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAG 239
+V+S+TPLPLL KLK YV H N RIRAKAAISIS V+KM LEGM E GLVSLVQVAA
Sbjct: 180 ALVKSMTPLPLLNKLKLYVSHVNLRIRAKAAISISNFVSKMELEGMNEFGLVSLVQVAAD 239
Query: 240 LLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKIITS 296
LLNDRLPEAREAAR V S+Y A+T NEE KQE WQ+FCQS+L PI AQS+VKI +S
Sbjct: 240 LLNDRLPEAREAARRTVISIYEAYTGNEEQKQEEWQNFCQSSLPPIHAQSIVKITSS 296
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432852|ref|XP_004134212.1| PREDICTED: protein FAM179B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/297 (69%), Positives = 246/297 (82%), Gaps = 7/297 (2%)
Query: 1 MALRPIDNALPITTPERPKKQVKFAAPVQKQPDLSVNDENKASFPPSADAFIDYIPSENL 60
MALRPIDNALP+T PERPKKQ K PVQK NDEN+A PPSADA IDY+ SENL
Sbjct: 1 MALRPIDNALPVT-PERPKKQAKVVVPVQKG-----NDENQAPLPPSADATIDYVSSENL 54
Query: 61 KAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKN 120
K + DP+S + IEGLDSKDW VCE+LNNARR A+ HS LL P+LEKVM V++K+MKN
Sbjct: 55 KPLTDPDSNVQNFIEGLDSKDWVKVCETLNNARRLAIFHSDLLLPSLEKVMVVLMKSMKN 114
Query: 121 PRSALCKTSIMAASDIFSAFGDKLLD-STSDALDNLVLQLLMKASQDKKFVCEEADRALN 179
PRSAL KTSIMA++DIF+AFGD+LLD STS+A D L+LQLL+KASQDKKFVCEEAD+AL
Sbjct: 115 PRSALIKTSIMASADIFNAFGDRLLDTSTSNAFDQLLLQLLLKASQDKKFVCEEADKALK 174
Query: 180 TMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAG 239
+V+S+TPLPLLQKL+ YV H+N R+RAKAAI IS CV+KMGLE M + G V L+Q+A+
Sbjct: 175 ALVQSMTPLPLLQKLRPYVSHSNLRVRAKAAIPISNCVSKMGLEEMNQYGFVPLLQMASD 234
Query: 240 LLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKIITS 296
LLNDRLPEAREAARS+V M+ A+TENEE KQEAWQSFCQ+NL PI +QS++K++TS
Sbjct: 235 LLNDRLPEAREAARSIVMGMFKAYTENEEDKQEAWQSFCQANLSPIHSQSLLKVVTS 291
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449513357|ref|XP_004164305.1| PREDICTED: protein FAM179B-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/297 (69%), Positives = 245/297 (82%), Gaps = 7/297 (2%)
Query: 1 MALRPIDNALPITTPERPKKQVKFAAPVQKQPDLSVNDENKASFPPSADAFIDYIPSENL 60
MALRPIDNALP+T PERPKKQ K PVQK NDEN+A PPSADA IDY+ SENL
Sbjct: 1 MALRPIDNALPVT-PERPKKQAKVVVPVQKG-----NDENQAPLPPSADATIDYVSSENL 54
Query: 61 KAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKN 120
K + DP+S + IEGLDSKDW VCE+LNNARR A+ HS LL P+LEKVM V++K+MKN
Sbjct: 55 KPLTDPDSNVQNFIEGLDSKDWVKVCETLNNARRLAIFHSDLLLPSLEKVMVVLMKSMKN 114
Query: 121 PRSALCKTSIMAASDIFSAFGDKLLD-STSDALDNLVLQLLMKASQDKKFVCEEADRALN 179
PRSAL KTSIMA++DIF+AFGD LLD STS+A D L+LQLL+KASQDKKFVCEEAD+AL
Sbjct: 115 PRSALIKTSIMASADIFNAFGDWLLDTSTSNAFDQLLLQLLLKASQDKKFVCEEADKALK 174
Query: 180 TMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAG 239
+V+S+TPLPLLQKL+ YV H+N R+RAKAAI IS CV+KMGLE M + G V L+Q+A+
Sbjct: 175 ALVQSMTPLPLLQKLRPYVSHSNLRVRAKAAIPISNCVSKMGLEEMNQYGFVPLLQMASD 234
Query: 240 LLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKIITS 296
LLNDRLPEAREAARS+V M+ A+TENEE KQEAWQSFCQ+NL PI +QS++K++TS
Sbjct: 235 LLNDRLPEAREAARSIVMGMFKAYTENEEDKQEAWQSFCQANLSPIHSQSLLKVVTS 291
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114958|ref|XP_002332272.1| predicted protein [Populus trichocarpa] gi|222832037|gb|EEE70514.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 223/297 (75%), Positives = 248/297 (83%), Gaps = 5/297 (1%)
Query: 1 MALRPIDNALPITTPERPKKQVKFAA-PVQKQPDLSVNDENKASFPPSADAFIDYIPSEN 59
MALRPIDN+LPI PERPKK VK + P+QKQ ++ VNDENKA P D+ IDYI S++
Sbjct: 1 MALRPIDNSLPIA-PERPKKHVKVVSVPIQKQSEVGVNDENKAPLP---DSTIDYISSDD 56
Query: 60 LKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK 119
LK I DPES I LIE LDSKDWT VCESLNNARRFAL+HSSLL P LEKVM+VVVKAMK
Sbjct: 57 LKPISDPESKIQGLIERLDSKDWTKVCESLNNARRFALYHSSLLLPFLEKVMSVVVKAMK 116
Query: 120 NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALN 179
NPRSAL KTSIMA+SDIF AFGD+LLDSTSDA D+L+LQLL+KASQDKKFVCEEADRALN
Sbjct: 117 NPRSALIKTSIMASSDIFYAFGDQLLDSTSDAFDSLLLQLLLKASQDKKFVCEEADRALN 176
Query: 180 TMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAG 239
+V+S+TPLPLL KLK YV H N RIRAKAAISIS V+KM LEGM E GLVSLVQVAA
Sbjct: 177 ALVKSMTPLPLLNKLKLYVSHVNLRIRAKAAISISNFVSKMELEGMNEFGLVSLVQVAAD 236
Query: 240 LLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKIITS 296
LLNDRLPEAREAAR V S+Y A+T NEE KQE WQ+FCQS+L PI AQS+VKI +S
Sbjct: 237 LLNDRLPEAREAARRTVISIYEAYTGNEEQKQEEWQNFCQSSLPPIHAQSIVKITSS 293
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114942|ref|XP_002332268.1| predicted protein [Populus trichocarpa] gi|222832033|gb|EEE70510.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 207/298 (69%), Positives = 238/298 (79%), Gaps = 17/298 (5%)
Query: 1 MALRPIDNALPITTPERPKKQVKFAAPVQKQPDLSVNDENKA--SFPPSADAFIDYIPSE 58
MAL+PIDNAL + PE K L VN+ENK S PPSAD IDYI SE
Sbjct: 1 MALKPIDNAL-LLPPETIK--------------LGVNEENKTAESLPPSADPIIDYISSE 45
Query: 59 NLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAM 118
NL+ I DPES I L+E LDSKDWT VCESLN+ RRFAL+HS LL P LEKV+ V VKAM
Sbjct: 46 NLEPISDPESKIHGLVEELDSKDWTKVCESLNDVRRFALYHSLLLLPILEKVILVAVKAM 105
Query: 119 KNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRAL 178
KNPRSALCKTSIMA+SDIF FGD+LLDST +A DNL+LQLL+KASQDK+FVCEEADRAL
Sbjct: 106 KNPRSALCKTSIMASSDIFKVFGDQLLDSTINAFDNLLLQLLLKASQDKRFVCEEADRAL 165
Query: 179 NTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAA 238
N MV+S+TPLPLL KL+ YV H+NP++RAKAAI+IS V+KMGLEGM E GLVSLVQ+AA
Sbjct: 166 NAMVKSMTPLPLLNKLRPYVSHSNPKVRAKAAITISKSVSKMGLEGMNEFGLVSLVQMAA 225
Query: 239 GLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKIITS 296
LLNDRLPEAREAAR++V S+Y A+T NEE KQE+WQ+FCQS+L PI AQSMVKI +S
Sbjct: 226 DLLNDRLPEAREAARNIVTSIYEAYTRNEEQKQESWQNFCQSSLPPIHAQSMVKITSS 283
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529571|ref|XP_003533363.1| PREDICTED: uncharacterized protein LOC100806408 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/296 (66%), Positives = 231/296 (78%), Gaps = 2/296 (0%)
Query: 1 MALRPIDNALPITTPERPKKQVKFAAPVQKQPD-LSVNDENKASFPPSADAFIDYIPSEN 59
MALRPIDNALP TTPERPKKQ K A QKQ D SVN EN P S DA +DY+ S+N
Sbjct: 1 MALRPIDNALPTTTPERPKKQPKIAVATQKQQDRASVNGENVVPLPSSEDATVDYVSSDN 60
Query: 60 LKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK 119
LK + DPE I L+E LDSK+W VCESLN+ RRF+L HSSLL P L K++ VV K M+
Sbjct: 61 LKPLADPEVKIQSLVEDLDSKNWIKVCESLNDVRRFSLLHSSLLFPILGKIVLVVAKTMR 120
Query: 120 NPRSALCKTSIMAASDIFSAFGDKLLD-STSDALDNLVLQLLMKASQDKKFVCEEADRAL 178
NPRSALCKT+IMAA+DIFSAFGDKLL+ TSDA D L+LQLL+KASQDK+FVCEEADRAL
Sbjct: 121 NPRSALCKTAIMAAADIFSAFGDKLLEPETSDAFDGLLLQLLLKASQDKRFVCEEADRAL 180
Query: 179 NTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAA 238
MV S+TPLPLL+KL+ YV H N R+RAKAA+S+S CV+KMGLE M++ GL L++VAA
Sbjct: 181 GIMVGSMTPLPLLKKLRVYVSHKNLRVRAKAAVSLSNCVSKMGLEEMEQFGLAELIEVAA 240
Query: 239 GLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKII 294
LLNDRLPEAR+AARS+ SMY A T++ E E WQSFCQS L PI A S++KI+
Sbjct: 241 DLLNDRLPEARDAARSIATSMYEALTKDSEEMMELWQSFCQSKLPPIHALSILKIV 296
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107133|ref|XP_002314385.1| predicted protein [Populus trichocarpa] gi|222863425|gb|EEF00556.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 366 bits (940), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 204/301 (67%), Positives = 237/301 (78%), Gaps = 19/301 (6%)
Query: 1 MALRPIDNALPITTPERPKKQVKFAAPVQKQPDLSVNDENKAS--FPPSADAFIDYIPSE 58
MAL+PIDNALP+ P + KF VN+E+K + PP AD IDYI SE
Sbjct: 1 MALKPIDNALPL-----PHETAKFG----------VNEESKIASLPPPPADPIIDYISSE 45
Query: 59 NLKAIPDPESMIPC--LIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVK 116
NL+ I DPES I L+E LDSKDWT VCESLNN RRFAL+HS LL P LEKVM +VVK
Sbjct: 46 NLEPISDPESEIQAVGLVEELDSKDWTRVCESLNNVRRFALYHSLLLLPILEKVMLMVVK 105
Query: 117 AMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADR 176
AMKNPRSALCKTSIMA+SDIF FGD+ LDS ++A DNL+LQLL+KASQDK+FVCEEAD+
Sbjct: 106 AMKNPRSALCKTSIMASSDIFKVFGDQSLDSANNAFDNLLLQLLLKASQDKRFVCEEADK 165
Query: 177 ALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV 236
ALN MV+S+TPLPLL KL+ YV+H NPRIRAKAAI+IS V+KMGLE M E GLVSLVQ+
Sbjct: 166 ALNAMVKSMTPLPLLNKLRPYVRHINPRIRAKAAITISNSVSKMGLEAMNEFGLVSLVQM 225
Query: 237 AAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKIITS 296
AA LLNDRLPEAREAAR++V +Y A+T NEE KQE+WQ+FCQS+L PI AQSMVKI +S
Sbjct: 226 AADLLNDRLPEAREAARNIVTCIYEAYTRNEEQKQESWQNFCQSSLPPIHAQSMVKITSS 285
Query: 297 Q 297
Q
Sbjct: 286 Q 286
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297800586|ref|XP_002868177.1| hypothetical protein ARALYDRAFT_493301 [Arabidopsis lyrata subsp. lyrata] gi|297314013|gb|EFH44436.1| hypothetical protein ARALYDRAFT_493301 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 350 bits (899), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 184/303 (60%), Positives = 235/303 (77%), Gaps = 13/303 (4%)
Query: 1 MALRPIDNALPITTPERPKKQVKFAAPVQKQPDLSVNDENKASFPPSADAFIDYIPSENL 60
MALR I+NALPI+ ERPKK K + KQP++ +NDEN P ++ ++Y+ SENL
Sbjct: 1 MALRNIENALPISQ-ERPKKLAKLS----KQPEIGLNDENNPVVVP--ESIVEYVASENL 53
Query: 61 KAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKN 120
+ DPES + L+E L SKDW VCESLNN RRFA++HSSLL P LEK++ V+VKAMKN
Sbjct: 54 EPFSDPESSVQRLLEELASKDWIKVCESLNNTRRFAVYHSSLLLPILEKLIVVMVKAMKN 113
Query: 121 PRSALCKTSIMAASDIFSAFGDKLLDSTS-DALDNLVLQLLMKASQDKKFVCEEADRALN 179
PRSALCKTSIM SDIF A+G+KLL+ ++D+L+LQLLMKASQDKKFVCEEAD+ALN
Sbjct: 114 PRSALCKTSIMTCSDIFIAYGEKLLEGPHLKSMDDLLLQLLMKASQDKKFVCEEADKALN 173
Query: 180 TMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAG 239
TMV S+ LPLL+KL+TYV+H+NPR+RAKAA+S S CV+KM L M+E G+V L Q+AA
Sbjct: 174 TMVNSVARLPLLRKLQTYVRHSNPRVRAKAAVSTSNCVSKMELNEMEEFGMVLLAQMAAD 233
Query: 240 LLNDRLPEAREAARSMVNSMYNAFTENEE-----HKQEAWQSFCQSNLQPIDAQSMVKII 294
LL+D+LPEAREAARSMVNS++ FT NEE KQEAW+ FC+ + ++AQ+M+KI+
Sbjct: 234 LLSDKLPEAREAARSMVNSLFQKFTWNEEDDEEGSKQEAWKKFCEKKVTGLNAQAMIKIV 293
Query: 295 TSQ 297
+SQ
Sbjct: 294 SSQ 296
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 297 | ||||||
| TAIR|locus:2130814 | 296 | AT4G15830 [Arabidopsis thalian | 0.973 | 0.976 | 0.549 | 8.5e-81 | |
| TAIR|locus:2096667 | 326 | AT3G01450 "AT3G01450" [Arabido | 0.801 | 0.730 | 0.401 | 1.8e-46 | |
| TAIR|locus:2185505 | 346 | AT5G14790 "AT5G14790" [Arabido | 0.861 | 0.739 | 0.375 | 2.4e-44 | |
| TAIR|locus:2086919 | 361 | AT3G18530 [Arabidopsis thalian | 0.582 | 0.479 | 0.331 | 4.9e-21 | |
| MGI|MGI:2443498 | 1002 | Fam179a "family with sequence | 0.666 | 0.197 | 0.277 | 3.2e-08 | |
| FB|FBgn0259818 | 1655 | CG42399 [Drosophila melanogast | 0.686 | 0.123 | 0.25 | 4.5e-08 |
| TAIR|locus:2130814 AT4G15830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 167/304 (54%), Positives = 217/304 (71%)
Query: 1 MALRPIDNALPITTPERPKKQVKFAAPVQKQPDLSVNDENKASFPPS-ADAFIDYIPSEN 59
MALR I+NALPI+ ERPKK K + KQP++ +NDEN P + A++ ++Y+ SEN
Sbjct: 1 MALRNIENALPISQ-ERPKKLAKLS----KQPEIGLNDENN---PVAVAESTVEYVASEN 52
Query: 60 LKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEXXXXXXXXXXX 119
LK DPES + L+E L SKDW VC+SLNN RRFA+HHSSLL P LE
Sbjct: 53 LKPFSDPESSVQRLLEELASKDWIKVCDSLNNTRRFAIHHSSLLLPILEKLIVVMVKAMK 112
Query: 120 NPRSALCKTSIMAASDIFSAFGDKLLDSTS-DALDNLVLQLLMKASQDKKFVCEEADRAL 178
NPRSALCKTSIM SDIF+A+G+KLL+ ++D+L+LQLLMKASQDKKFVCEEA++AL
Sbjct: 113 NPRSALCKTSIMTCSDIFTAYGEKLLEGPHLKSMDDLLLQLLMKASQDKKFVCEEAEKAL 172
Query: 179 NTMVESITPLPLLQKLKTYVKHTNPXXXXXXXXXXXXCVTKMGLEGMKELGLVSLVQVAA 238
NTMV S+ LPLL+KL++YV+H+NP CV+KM + M+E G++ L Q+AA
Sbjct: 173 NTMVNSVARLPLLRKLQSYVRHSNPRVRAKAAVSTSNCVSKMEVNEMEEFGMILLAQMAA 232
Query: 239 GLLNDRLPEAREAARSMVNSMYNAFTENEEH-----KQEAWQSFCQSNLQPIDAQSMVKI 293
L+D+LPEAREAARSMVNS++ FT NEE KQEAW+ FC+ N+ ++AQ+M+KI
Sbjct: 233 DQLSDKLPEAREAARSMVNSLFEKFTWNEEEDEEGSKQEAWKKFCEKNVTGLNAQAMIKI 292
Query: 294 ITSQ 297
+ SQ
Sbjct: 293 VASQ 296
|
|
| TAIR|locus:2096667 AT3G01450 "AT3G01450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 100/249 (40%), Positives = 154/249 (61%)
Query: 52 IDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEXXX 111
I+YI S++L + ++++ L+ LDSKDW VC++LN RR ++ H + LE
Sbjct: 67 IEYIESKDLNNVTQVDAVLKSLVTELDSKDWVLVCDALNTIRRLSIFHKEEMLHMLEKVI 126
Query: 112 XXXXXXXXNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVC 171
NPRSA+ KT+ M ++DIFS++ D T D LD L+ QLL+K+SQDK+FVC
Sbjct: 127 LFIVKSLKNPRSAVSKTACMTSADIFSSYNDH----TIDQLDLLLTQLLLKSSQDKRFVC 182
Query: 172 EEADRALNTMVESITPLPLLQKLKTYVKHTNPXXXXXXXXXXXXCVTKMGLEGMKELGLV 231
E A++AL M ++P LL KL+ ++K+ NP CV ++G+EG++E G+
Sbjct: 183 EAAEKALVAMTAHVSPALLLPKLQPFLKNRNPRIRAKASTCFSRCVPRLGIEGIREYGIE 242
Query: 232 SLVQVAAGLLNDRLPEAREAARSMVNSMYNAF--TENEEHKQE-----AWQSFCQSNLQP 284
LVQ A+ L+D+LPE+REAAR+++ + + T N E K+E WQ FCQSNL P
Sbjct: 243 KLVQAASSQLSDQLPESREAARAVLLELQTVYKKTTNVEPKEEHPEPVTWQIFCQSNLSP 302
Query: 285 IDAQSMVKI 293
+ AQ+++++
Sbjct: 303 LSAQAVIRV 311
|
|
| TAIR|locus:2185505 AT5G14790 "AT5G14790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 104/277 (37%), Positives = 166/277 (59%)
Query: 33 DLSVNDENKASFPPSADAFIDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNA 92
D V + K P A ++YI SENL + D ++++ ++ GL+SKDW ++C++LNN
Sbjct: 52 DSKVVEAEKPE-PEIAIVEVEYIESENLDNVDDADAVLKSVLAGLESKDWISLCDALNNV 110
Query: 93 RRFALHHSSLLEPNLEXXXXXXXXXXXNPRSALCKTSIMAASDIFSAFGDKLLDSTSDAL 152
RR ++ H + LE NPRSA+CKT+ M ++DIFSA+ + + +D L
Sbjct: 111 RRLSIFHKEEMMHMLEKVIPLVVKSLKNPRSAVCKTACMTSADIFSAYNNHI----TDLL 166
Query: 153 DNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPXXXXXXXXX 212
+ L+ QLL+K+SQDK+FVCE A++AL M + ++P LL KL+ +K+ NP
Sbjct: 167 EPLLTQLLLKSSQDKRFVCEAAEKALTAMTKYVSPTLLLPKLQPCLKNRNPRIRAKASLC 226
Query: 213 XXXCVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMV---NSMY-------NA 262
V ++G+EG+KE G+ LVQ AA L+D+LPE+REAAR+++ S+Y N
Sbjct: 227 FSRSVPRLGVEGIKEYGIDKLVQAAASQLSDQLPESREAARTVLLELQSVYEKAHPLINP 286
Query: 263 FTENEEHKQ----E--AWQSFCQSNLQPIDAQSMVKI 293
T + E +Q E W++FC+S L + AQ+++++
Sbjct: 287 ETSSPEEQQIPEVEPITWETFCKSKLSALSAQAVLRV 323
|
|
| TAIR|locus:2086919 AT3G18530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
Identities = 60/181 (33%), Positives = 98/181 (54%)
Query: 52 IDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNV-CE-SLNNARRFALHHSSLLEPNLEX 109
++YI S++L + + ++++ I + S +T + C+ S + R + H
Sbjct: 67 LEYIKSKDLNNVAEVDAVLKVSI--VLSWYYTMLYCDFSFSLDRSSSFHFPQGRNAAFAK 124
Query: 110 XXXXXXXXXXNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKF 169
NPRSA+ KT+ M + DIFS++ D + D LD L+ QLL+K+SQDK+F
Sbjct: 125 VILFVVKSLKNPRSAVSKTACMTSEDIFSSYNDHIFDQ----LDRLLTQLLLKSSQDKRF 180
Query: 170 VCEEADRALNTMVESITPLPLLQKLKTYVKHTNPXXXXXXXXXXXXCVTKMGLEGMKELG 229
VCE A+RAL M ++P LL KL+ +K+ +P CV ++G+EGM+E G
Sbjct: 181 VCEAAERALVAMTTHVSPALLLPKLRPCLKNKSPRIRAKASACFSGCVPRLGIEGMREYG 240
Query: 230 L 230
+
Sbjct: 241 I 241
|
|
| MGI|MGI:2443498 Fam179a "family with sequence similarity 179, member A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 159 (61.0 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 58/209 (27%), Positives = 87/209 (41%)
Query: 60 LKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEXXXXXXXXXXX 119
L+ +PE + ++ L+S DW + L N +R A HS +L L
Sbjct: 483 LRPFSNPELGLTDALQCLNSNDWQMKEKGLVNIQRLAACHSEVLGTRLHDVSLAVTAEVT 542
Query: 120 NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALN 179
N RS + + +I D+F K +D ++ +V LL K +F+ A+RAL
Sbjct: 543 NLRSKVSRLAISTLGDLFRVL-KKNMDQEAE---EIVRCLLQKMGNTSEFIQRAANRALG 598
Query: 180 TMVESITPLPLLQKLKTY-VKHTNPXXXXXXXXXXXXCVTKMGLE----GMKELGLVSLV 234
MVE++TP L L + V H NP + ++G E G ++ LV
Sbjct: 599 AMVENVTPARALVALTSAGVYHRNPLVRKCTAKHLSAVLEQIGAEKLLSGSRD-NTDMLV 657
Query: 235 QVAAGLLNDRLPEAREAARSMVNS-MYNA 262
L D + R R MVN M NA
Sbjct: 658 HNLVRLAQDSNQDTRFYGRKMVNILMANA 686
|
|
| FB|FBgn0259818 CG42399 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 157 (60.3 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 55/220 (25%), Positives = 94/220 (42%)
Query: 58 ENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEXXXXXXXXX 117
+N+ P + + LDS +W L + R +H+ L+ +
Sbjct: 1423 QNMVRFDRPREALLKTFDQLDSSNWEVNVSGLKSMVRLIRYHAETLDNQMHMTCIQLTRS 1482
Query: 118 XXNPRSALCKTSIMAASDIFSAFGDKLLDSTS--DALDNLVLQLLMKASQDKKFVCEEAD 175
N RS + + S AA+++FS L STS D+LV LL + + +F+ +A+
Sbjct: 1483 VRNLRSQVARASCQAAAELFS------LKSTSLQQECDDLVCALLHRTADTNRFLRADAN 1536
Query: 176 RALNTMVESITPLPLLQKLKTY-VKHTNPXXXXXXXXXXXXCVTKMGLEGMKELGLVS-- 232
RAL +MV+ P +L L T +H N V ++G + + +G S
Sbjct: 1537 RALESMVDHAQPQKILNILATKGAQHQNALVRTTSAKLLFRLVERLGSDRIYAMGRESRD 1596
Query: 233 -LVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQ 271
V A LL + E R A+S+ + A +EN +++
Sbjct: 1597 KFFVVGANLLLEGSLETRSYAKSL----FRALSENHNYQR 1632
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.129 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 297 274 0.00078 115 3 11 23 0.39 34
33 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 609 (65 KB)
Total size of DFA: 194 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.49u 0.09s 21.58t Elapsed: 00:00:01
Total cpu time: 21.49u 0.09s 21.58t Elapsed: 00:00:01
Start: Tue May 21 03:41:58 2013 End: Tue May 21 03:41:59 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 297 | |||
| pfam12348 | 228 | pfam12348, CLASP_N, CLASP N terminal | 9e-05 |
| >gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-05
Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 11/151 (7%)
Query: 122 RSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQD-KKFVCEEADRALNT 180
R+ L T ++ G L D ++ L L L+K D KK + + A++A+
Sbjct: 66 RTTLSSTGCHLLKELAIQLGHHL-DPFAEIL----LPTLLKLCGDTKKIISQNANQAVAD 120
Query: 181 MVESITPLP--LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK---ELGLVSLVQ 235
++ +++ P LQ + ++ N + R +AI + I + + G GL +
Sbjct: 121 ILSNVSYTPRLELQHISAALQDKNVQPREYSAIWLKILLIRHGHHKSHIEHHGGLDLYEK 180
Query: 236 VAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266
L D P RE ARS + +
Sbjct: 181 SLKKGLEDANPGVRETARSTFWEFFRVWPAR 211
|
This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 297 | |||
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.97 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 99.4 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.21 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.87 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 97.86 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.7 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.64 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 97.6 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.57 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.56 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.42 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 97.38 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 97.35 | |
| PRK09687 | 280 | putative lyase; Provisional | 97.27 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.17 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.13 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 96.99 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 96.9 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.68 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 96.66 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 96.65 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 96.61 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.52 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.51 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 96.51 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.43 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 96.43 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.31 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.21 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.13 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 95.91 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 95.9 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 95.74 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 95.73 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 95.66 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 95.56 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.21 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 95.14 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 94.94 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.78 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 94.6 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 94.52 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 94.33 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 94.33 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 94.22 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 94.22 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 94.12 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 94.03 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 94.02 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.99 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 93.92 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 93.74 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 93.67 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 93.59 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 93.49 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 93.39 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 93.23 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 92.94 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 92.94 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 92.82 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 92.28 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 92.27 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 92.27 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 92.18 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 91.84 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 91.44 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 91.41 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 91.37 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 91.34 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 91.17 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 91.04 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 89.67 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 89.44 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 89.29 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 89.15 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 88.97 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 88.42 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 88.23 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 88.19 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 88.03 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 87.5 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 87.32 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 87.07 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 86.92 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 86.76 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 86.34 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 86.27 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 86.25 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 86.23 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 86.04 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 85.93 | |
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 85.81 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 85.41 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 85.24 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 84.96 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 84.84 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 84.82 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 84.3 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 84.08 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 83.84 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 83.61 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 82.72 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 82.26 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 81.86 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 81.82 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 81.64 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 81.41 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 80.69 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 80.1 |
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-51 Score=377.51 Aligned_cols=290 Identities=36% Similarity=0.561 Sum_probs=257.7
Q ss_pred CCCCCCccCCCCCCCCC--cchh-------hhhccC---CCCCCCCCCCCC------CCCCCCCCCcccceeccCCCCCC
Q 022417 1 MALRPIDNALPITTPER--PKKQ-------VKFAAP---VQKQPDLSVNDE------NKASFPPSADAFIDYIPSENLKA 62 (297)
Q Consensus 1 ~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~v~y~~~~eL~P 62 (297)
++|+.+-||+| .+.|| ++|. .|-.-. -.+++-..+..+ -..|+++...++++|+.+++|.|
T Consensus 4 ~~l~~~~~~~p-~sqer~~d~~as~~~~~~gK~~gs~e~~p~~~~~pl~h~~~t~~~~~~~~~e~~~~~~e~~~sk~l~~ 82 (334)
T KOG2933|consen 4 KALKDLRNALP-VSQERFQDKKASIVKSCMGKMSGSHEDKPPTNHPPLDHNSPTPQEAIKQEGERLIHSVEYIVSKNLSP 82 (334)
T ss_pred hhhhhccccCc-cchhcccccccccccchhhcccCccccCCCCCCCCccccCCCchhhhccccccccccHHHhhhcccCc
Confidence 47888999999 88888 7772 222100 011111222222 22346666788999999999999
Q ss_pred CCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC
Q 022417 63 IPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 63 l~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
|++|+.+|+.++.+|+|+||+.+|+||++||||+.||+|.+.+.|++++..|+++++||||+|||+||+|++|||+.|++
T Consensus 83 fd~p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~ 162 (334)
T KOG2933|consen 83 FDDPEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN 162 (334)
T ss_pred cCcHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
.++. ++|.++.+||+|++++|+||||+|++||.+||.+++|.++++.|+.+++|.|+.+|++++.|+.+|+.++|.
T Consensus 163 -~i~~---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v 238 (334)
T KOG2933|consen 163 -SIDQ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGV 238 (334)
T ss_pred -HHHH---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhccccccceeccc
Confidence 6775 499999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchh-------hh---HHHHHHHHHhcCChhhHHHHHH
Q 022417 223 EGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEE-------HK---QEAWQSFCQSNLQPIDAQSMVK 292 (297)
Q Consensus 223 ~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~-------~~---~~~~~~~~~~~l~~~~a~~~~~ 292 (297)
..+..++...+.+.+..-..|..|+.|+.||-++..+.++|....+ .+ ...|+.||++++++..+|++++
T Consensus 239 ~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~~~~~~lv~~e~~n~e~r~~t~~~v~~~~~~~~~~~~~lr 318 (334)
T KOG2933|consen 239 LPVLLQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVLKTAQELVEDESENPEVRKATWRGVCPKSLTGLSAQAVLR 318 (334)
T ss_pred cchhhHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHHHHhhhhcchhhcCcchhhhhhhhcCccCCchhhHHHHHH
Confidence 9988899999999999999999999999999999999999977643 23 3799999999999999999999
Q ss_pred hhc
Q 022417 293 IIT 295 (297)
Q Consensus 293 ~~~ 295 (297)
+++
T Consensus 319 ~~n 321 (334)
T KOG2933|consen 319 VTN 321 (334)
T ss_pred Hhh
Confidence 986
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-31 Score=235.38 Aligned_cols=186 Identities=29% Similarity=0.432 Sum_probs=148.5
Q ss_pred CCcCHHHHHHHHHHHHHHHhhC-----hhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhH
Q 022417 78 DSKDWTNVCESLNNARRFALHH-----SSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDAL 152 (297)
Q Consensus 78 ~s~dW~~~~eaL~~LRrLa~~h-----~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~l 152 (297)
++.||+++++||..||+++.+| ++.+.+.+++++..+.+.+.|+||+|+++||.++++||..+|+ .|++. +
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~-~~~~~---~ 92 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS-HFEPY---A 92 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG-GGHHH---H
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH-hHHHH---H
Confidence 7789999999999999999988 4566677888889999999999999999999999999999999 79876 8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-chhH-HHHHHhhccCCCHHHHHHHHHHHHHHHHhhC--chhhhh-
Q 022417 153 DNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-PLPL-LQKLKTYVKHTNPRIRAKAAISISICVTKMG--LEGMKE- 227 (297)
Q Consensus 153 d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-~~kl-l~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g--~~~l~~- 227 (297)
+.+++.||.+.+++|+||++.|..||..|+++|+ +.++ +..+..+.+|||+.+|..++.|+..+++.+| ...+..
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 9999999999999999999999999999999999 7888 7777889999999999999999999999999 333332
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccch
Q 022417 228 LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENE 267 (297)
Q Consensus 228 ~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~ 267 (297)
..++.+.+.+.++++|++||||++||++|+.|++.|++.+
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 2368999999999999999999999999999999999765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=128.01 Aligned_cols=195 Identities=16% Similarity=0.184 Sum_probs=172.2
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhCh-hhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHS-SLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~-e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
..-..+..++.|.||..+.+||..+-....... +...+....+...+.-..+|-.-.|...|..++..|+..++. .+.
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~-~~~ 331 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP-LFR 331 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch-hhH
Confidence 334477788999999999999998888887555 333455677777777788899999999999999999999999 555
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
+ .....++.+|.+.++.+.++++.+-.+++++++.+.-.+..+.+..+++||||++|..+..++..++..+++....
T Consensus 332 ~---~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 332 K---YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred H---HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 4 4778899999999999999999999999999998889999999999999999999999999999999999974444
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
.+..+.+++.+.+.++|.+.+||.+|..++..+.++++.+
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 5678999999999999999999999999999999999764
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.8e-10 Score=112.50 Aligned_cols=210 Identities=20% Similarity=0.192 Sum_probs=166.8
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
-+..++..+....|+.+..++..++.++.+.|..+...+.++++.+.+.++|....|.++|+.|+..+.+...+.+
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d---- 330 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD---- 330 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH----
Confidence 3445555665669999999999999999999999999999999999999999999999999999999999888843
Q ss_pred hhhHHHHHHHHHHHhcc-------------ccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHH
Q 022417 149 SDALDNLVLQLLMKASQ-------------DKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~-------------sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
+..+++.|+.-.++ .++||.+.-..+|..| +|.|.+++..++..+++++++.+.+
T Consensus 331 ---I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalm---------vpiL~R~l~eRst~~kr~t~~IidN 398 (569)
T KOG1242|consen 331 ---IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALM---------VPILKRGLAERSTSIKRKTAIIIDN 398 (569)
T ss_pred ---HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHH---------HHHHHHHHhhccchhhhhHHHHHHH
Confidence 55566666654444 3577877777788777 9999999999999999999999999
Q ss_pred HHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhH-----HHHHHHHHhcCChhhHHHH
Q 022417 216 CVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQ-----EAWQSFCQSNLQPIDAQSM 290 (297)
Q Consensus 216 ~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~-----~~~~~~~~~~l~~~~a~~~ 290 (297)
++..+.++.-...-++.|++.+..-+.|..||+|.-+-+++..+.+-.+...+... |.=-.++.+...-..||.+
T Consensus 399 m~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l 478 (569)
T KOG1242|consen 399 MCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDL 478 (569)
T ss_pred HHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhH
Confidence 99999655544433899999999999999999999999999887776665543211 2222333444445556665
Q ss_pred HHhh
Q 022417 291 VKII 294 (297)
Q Consensus 291 ~~~~ 294 (297)
..|.
T Consensus 479 ~evl 482 (569)
T KOG1242|consen 479 SEVL 482 (569)
T ss_pred HHHH
Confidence 5544
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0016 Score=70.25 Aligned_cols=206 Identities=19% Similarity=0.270 Sum_probs=143.4
Q ss_pred HhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc-----
Q 022417 74 IEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST----- 148 (297)
Q Consensus 74 l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~----- 148 (297)
-..|.|.||..|.-||--|-.++.-.++.+.+.|.+|+..|+..++|+---|=-.||.++|-|...|.. .+...
T Consensus 354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p-~iqk~~~e~l 432 (1075)
T KOG2171|consen 354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP-EIQKKHHERL 432 (1075)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH-HHHHHHHHhc
Confidence 345689999999999999999999999999999999999999999999998999999999998887776 44331
Q ss_pred ------------------------------------hhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcCc----
Q 022417 149 ------------------------------------SDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESITP---- 187 (297)
Q Consensus 149 ------------------------------------~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s~---- 187 (297)
..++|.++..+|.-..+ +++-++|.+-.|+.++...+..
T Consensus 433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~p 512 (1075)
T KOG2171|consen 433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIP 512 (1075)
T ss_pred cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHh
Confidence 22355555544444444 6777888888777777666532
Q ss_pred --hhHHHHHHhhcc---CCC-HHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHh---ccCCCHHHHHHHHHHHHH
Q 022417 188 --LPLLQKLKTYVK---HTN-PRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGL---LNDRLPEAREAARSMVNS 258 (297)
Q Consensus 188 --~kll~~L~~~~~---hKn-~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~---l~D~~pE~R~~aRk~l~~ 258 (297)
.+++|.|..-+. .|+ -.+|.++-.|+..+-.-.|.++.... .+.+++.+..+ ..|-+--.|.|.-..+..
T Consensus 513 Y~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~-a~eliqll~~~~~~~~~~dd~~~sy~~~~war 591 (1075)
T KOG2171|consen 513 YFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPL-AEELIQLLLELQGSDQDDDDPLRSYMIAFWAR 591 (1075)
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHh-HHHHHHHHHhhcccchhhccccHHHHHHHHHH
Confidence 367777754332 222 35577777777666666665554433 45566666655 444455556666666666
Q ss_pred HHHHhccchhhhHHHHHHHHHhcCChhhHH
Q 022417 259 MYNAFTENEEHKQEAWQSFCQSNLQPIDAQ 288 (297)
Q Consensus 259 L~~~~~~~~~~~~~~~~~~~~~~l~~~~a~ 288 (297)
|=+.++ +.|+.|....+||.-.+
T Consensus 592 mc~ilg-------~~F~p~L~~Vmppl~~t 614 (1075)
T KOG2171|consen 592 MCRILG-------DDFAPFLPVVMPPLLKT 614 (1075)
T ss_pred HHHHhc-------hhhHhHHHHHhHHHHHh
Confidence 666666 46777777777765443
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0013 Score=66.74 Aligned_cols=150 Identities=18% Similarity=0.208 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCcchHHHHH-HHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC
Q 022417 108 EKVMAVVVKAMKNPRSALCKT-SIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT 186 (297)
Q Consensus 108 ~~i~~~v~~~vknLRS~Vsk~-A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s 186 (297)
..++..+.+.+.|..+..-|+ +..+..-.+..+|+ .++|. +.++++.+|.+.+|..+-+|++|..|..++..+.+
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-~~EPy---iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~ 248 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-PFEPY---IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS 248 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-CCCch---HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence 457788899999999999996 88888889999998 89986 89999999999999999999999999999999988
Q ss_pred ch---hHHHHHHhhccCCCHHHHHH--HHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 187 PL---PLLQKLKTYVKHTNPRIRAK--AAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 187 ~~---kll~~L~~~~~hKn~~VR~~--aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
+. .+++.++.+.... .-|.+ +.+++. ++....+ ..++.-+..+++.+.+-+.|..||+|++|..++..+-+
T Consensus 249 ~~aVK~llpsll~~l~~~--kWrtK~aslellg-~m~~~ap-~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 249 AYAVKLLLPSLLGSLLEA--KWRTKMASLELLG-AMADCAP-KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred cchhhHhhhhhHHHHHHH--hhhhHHHHHHHHH-HHHHhch-HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 54 4666665444322 33333 333333 3333332 23444479999999999999999999999999988766
Q ss_pred Hhcc
Q 022417 262 AFTE 265 (297)
Q Consensus 262 ~~~~ 265 (297)
....
T Consensus 325 vidN 328 (569)
T KOG1242|consen 325 VIDN 328 (569)
T ss_pred hhcc
Confidence 5544
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.015 Score=55.30 Aligned_cols=198 Identities=16% Similarity=0.119 Sum_probs=138.8
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhC--hhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHH--SSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKL 144 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h--~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~ 144 (297)
+..|..+++.+..+.=+.|..||..+.++..+| ++++.....+++..+.+.+|.-++.=..-|+.+++=++-.+|. .
T Consensus 42 e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~-g 120 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA-G 120 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC-C
Confidence 445889999998888999999999999999765 5788888999999999999999988888888999999999885 3
Q ss_pred CCcchhhHHHHHHHHHHHhc-c--ccHHHHHHHHHHHHHHHHhcC--ch------hHHHHHH--hhcc----------CC
Q 022417 145 LDSTSDALDNLVLQLLMKAS-Q--DKKFVCEEADRALNTMVESIT--PL------PLLQKLK--TYVK----------HT 201 (297)
Q Consensus 145 md~~~~~ld~ll~~LL~Ka~-~--sn~FI~e~A~~AL~~Mv~~~s--~~------kll~~L~--~~~~----------hK 201 (297)
-+.+ .+-+-+.+.|.+.. + ...-+|..+-.||..++=.+. +. .++..+. .+.+ ..
T Consensus 121 ~~~~--ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 121 EDSE--EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred ccHH--HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCC
Confidence 2322 23333344444443 2 233456666667765544322 21 2344332 1211 12
Q ss_pred CHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchh
Q 022417 202 NPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEE 268 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~ 268 (297)
++.|...+...-.-++..++...+.. ..+..++.+..+|...+.++|-+|=.++..||+.....++
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~-~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~ 264 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLED-LLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEE 264 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 35666666555556666666544543 2577788899999999999999999999999999886543
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.003 Score=56.35 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=101.5
Q ss_pred HHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhH
Q 022417 73 LIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDAL 152 (297)
Q Consensus 73 ~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~l 152 (297)
+...+.+..=.-...|+..+..|+.+-..-+.+.+..+++.+++.+.+-...+...|..|+..|+...+- .
T Consensus 58 i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---------~ 128 (228)
T PF12348_consen 58 IIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---------S 128 (228)
T ss_dssp HHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H----------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---------H
Confidence 3345555555667788888999998777778888999999999999999999999999999999987661 1
Q ss_pred HHHHHHHHH-HhccccHHHHHHHHHHHHHHHHhcC---c--------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 153 DNLVLQLLM-KASQDKKFVCEEADRALNTMVESIT---P--------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 153 d~ll~~LL~-Ka~~sn~FI~e~A~~AL~~Mv~~~s---~--------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
..++...+. -..+.|..+|..+-..|..+++..+ . ..+++.|..++.+.++.||..+-.++..+.+.+
T Consensus 129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 233233333 3456889999999999999998888 1 347777788999999999999999999998888
Q ss_pred Cch
Q 022417 221 GLE 223 (297)
Q Consensus 221 g~~ 223 (297)
|..
T Consensus 209 ~~~ 211 (228)
T PF12348_consen 209 PER 211 (228)
T ss_dssp -HH
T ss_pred CHh
Confidence 843
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0055 Score=66.18 Aligned_cols=199 Identities=18% Similarity=0.189 Sum_probs=150.9
Q ss_pred CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHH---cCCCCCCcchhhH
Q 022417 78 DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK--NPRSALCKTSIMAASDIFSA---FGDKLLDSTSDAL 152 (297)
Q Consensus 78 ~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vk--nLRS~Vsk~A~~tl~dLf~~---l~~~~md~~~~~l 152 (297)
..+|=..-.++|..+-.|+.-.|.++.+.|.+|+....+..+ ++-..+=-.|+..+.-+.++ ..+ ... ...
T Consensus 216 ~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k-~~~---~~~ 291 (1075)
T KOG2171|consen 216 QDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCK-KLA---LLG 291 (1075)
T ss_pred hccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhh-hch---hhh
Confidence 344544456777778888888999999999999988877776 48888888888888887776 222 222 247
Q ss_pred HHHHHHHHHHhcc---ccHH-------------HHHHHHHHHHHHHHhcCchhHHHHHH----hhccCCCHHHHHHHHHH
Q 022417 153 DNLVLQLLMKASQ---DKKF-------------VCEEADRALNTMVESITPLPLLQKLK----TYVKHTNPRIRAKAAIS 212 (297)
Q Consensus 153 d~ll~~LL~Ka~~---sn~F-------------I~e~A~~AL~~Mv~~~s~~kll~~L~----~~~~hKn~~VR~~aA~~ 212 (297)
+.++.++|+-+.+ +..+ -...|..+|+.+..+.+|..++|-+. ..++|-+..-|..+-..
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 7888888887643 3222 33457899999999999988777764 46778888888766666
Q ss_pred HHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCChhhHHH
Q 022417 213 ISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQS 289 (297)
Q Consensus 213 L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~ 289 (297)
|..+.+ |.+......++++++++-++++|..|-||++|=.++--+..-|. ...|+++++.++|..+..
T Consensus 372 ls~i~E--Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~-------p~iqk~~~e~l~~aL~~~ 439 (1075)
T KOG2171|consen 372 LSVIAE--GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ-------PEIQKKHHERLPPALIAL 439 (1075)
T ss_pred HHHHHc--ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc-------HHHHHHHHHhccHHHHHH
Confidence 666555 55555555799999999999999999999999998887777665 688999999999876654
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00059 Score=54.28 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=55.0
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 191 LQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 191 l~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
++-+..+..+.+.+||..+++.|.++++-.+.+.+.. ...++..+.+.+.|.++.||..|.-+-+.|
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~--f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY--FNEIFDALCKLSADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHh
Confidence 4555668889999999999999999998777444332 699999999999999999999997654443
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.025 Score=56.35 Aligned_cols=190 Identities=12% Similarity=0.204 Sum_probs=138.6
Q ss_pred HHHHHhccCCc-CHHHHHHHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 70 IPCLIEGLDSK-DWTNVCESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKNPR-SALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 70 l~~~l~~L~s~-dW~~~~eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vknLR-S~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
+...+.++++. .=+++-+||..|-.+......-+. ..+.+|+..+...+.+-+ ...-+.|+.-+++|++.-....+|
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 55666777544 778899999999999988876665 478999999999998844 455678999999999987775666
Q ss_pred cchhhHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHH-HHHHHHHHHHhhCchh
Q 022417 147 STSDALDNLVLQLLMKASQDK-KFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAK-AAISISICVTKMGLEG 224 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn-~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~-aA~~L~~~v~~~g~~~ 224 (297)
. .+..+..+|.-+.++. ..++.+++.|+.....+. |...+..+....-.- -.-|.. +-.++..+++++..+.
T Consensus 368 s----tE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~-P~~~I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~Ee 441 (516)
T KOG2956|consen 368 S----TEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL-PLQCIVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEE 441 (516)
T ss_pred h----HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC-chhHHHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHH
Confidence 4 5778888899888854 566666666666655554 444444443322111 111222 3347888999988776
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
+... ++-+.+++.+.-+-.+..||..+=-++..++...|-+
T Consensus 442 L~~l-l~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~ 482 (516)
T KOG2956|consen 442 LLNL-LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGME 482 (516)
T ss_pred HHHh-hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHH
Confidence 5443 7889999999999999999999999999999988843
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0097 Score=55.84 Aligned_cols=159 Identities=17% Similarity=0.114 Sum_probs=81.9
Q ss_pred CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 78 DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 78 ~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
++.||..+..+...|-.+...++.. ...++..+...+.+.-..|-+.|+.++|.+ |+ ...+.
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~----------~~ai~ 162 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVI----ND----------EAAIP 162 (280)
T ss_pred cCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CC----------HHHHH
Confidence 4455555555555444443222111 122333344445555455556666665422 22 11233
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHH---------HHHHhhCchhhh--
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISIS---------ICVTKMGLEGMK-- 226 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~---------~~v~~~g~~~l~-- 226 (297)
.|+.-..+.+..|+..|..+|..| ......+++.|...+++.|..||..++..|. .+++.++.+.+.
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~~~~ 240 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTVGDL 240 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCchHHH
Confidence 333333456667777777777777 2234467777777777778888777776654 333333322211
Q ss_pred ------hccHHHHHHHHHHhcc-CCCHHHHHHHHHHH
Q 022417 227 ------ELGLVSLVQVAAGLLN-DRLPEAREAARSMV 256 (297)
Q Consensus 227 ------~~~~~~ll~~~a~~l~-D~~pE~R~~aRk~l 256 (297)
+.|-++.++.+..++. +.++++|..|+.++
T Consensus 241 a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 241 IIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 1234555555555554 55666666665554
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.02 Score=56.98 Aligned_cols=172 Identities=17% Similarity=0.198 Sum_probs=116.7
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
.+.++++..+ .+=.++.+++..|=.+..... .+......+++.+.+-.-.+-|-+-..+..++ . .+++
T Consensus 8 el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~----~--~~~~ 75 (526)
T PF01602_consen 8 ELAKILNSFK-IDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYL----H--EDPE 75 (526)
T ss_dssp HHHHHHHCSS-THHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHT----T--TSHH
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHh----h--cchh
Confidence 3445555554 466777887766555544332 34455566777777777777776666655554 2 2332
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
.+--++..+.+-..+.|.+++..|=++|..+...--...+++.+...+.|++|.||++++.++..+.+.-+ +.+ .
T Consensus 76 --~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-~~~-~- 150 (526)
T PF01602_consen 76 --LLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP-DLV-E- 150 (526)
T ss_dssp --HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-CCH-H-
T ss_pred --HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-HHH-H-
Confidence 23334555555445689999998888888876443345677778889999999999999999999998722 221 1
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
.. +++.+.+++.|.+|.++.+|=.++..+
T Consensus 151 -~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 151 -DE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp -GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred -HH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 12 789999999999999999998888777
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.019 Score=60.81 Aligned_cols=177 Identities=16% Similarity=0.081 Sum_probs=114.9
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
.+.++-..|++.|=.++.+|++.+=.+.... ..+..+...|++.+.+-.-.+-|-..+.+.. +++ .+++
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-----~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~----ya~--~~pe 101 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMG-----RDVSYLFVDVVKLAPSTDLELKKLVYLYVLS----TAR--LQPE 101 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-----CCchHHHHHHHHHhCCCCHHHHHHHHHHHHH----Hcc--cChH
Confidence 4566667777777777788887555544433 3344555566667766655555554444433 333 2332
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
..--.+..|.+-..+.|.+||--|=++|..+-..---..++..|..++.|++|-||+++|.++..+...-. +.+..
T Consensus 102 --lalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv~~- 177 (746)
T PTZ00429 102 --KALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQ- 177 (746)
T ss_pred --HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccccc-
Confidence 22233445544445689999998888776653333334566677789999999999999999999876533 32222
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
..+++.+.+++.|.+|.|...|=.++..+.+.
T Consensus 178 --~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 178 --QDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred --cchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 23445566678999999999998888777654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.013 Score=54.97 Aligned_cols=127 Identities=17% Similarity=0.095 Sum_probs=85.5
Q ss_pred HHHHHHHH-hcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch
Q 022417 110 VMAVVVKA-MKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL 188 (297)
Q Consensus 110 i~~~v~~~-vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~ 188 (297)
+++.+... .++.=..|-+.|+.++|++... ...+ ....+..|..-..+++..||..+-.||. .+...
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~----~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg----~~~~~ 158 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKK----NPLY----SPKIVEQSQITAFDKSTNVRFAVAFALS----VINDE 158 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhccccc----cccc----chHHHHHHHHHhhCCCHHHHHHHHHHHh----ccCCH
Confidence 44444444 4555556666888888887422 1111 1234444444455678889988888884 34567
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
..++.|...+++.++.||..++..|-.+ + .+.+...+.+...+.|.++++|..|-.++..
T Consensus 159 ~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~------~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 159 AAIPLLINLLKDPNGDVRNWAAFALNSN----K------YDNPDIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcC----C------CCCHHHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 8889998888899999998887665544 1 1234566777788899999999999888764
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.028 Score=58.20 Aligned_cols=211 Identities=18% Similarity=0.185 Sum_probs=149.3
Q ss_pred hccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHH
Q 022417 75 EGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDN 154 (297)
Q Consensus 75 ~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ 154 (297)
+.|.+++|..+-.|+--+-.+|.-.=+.+.+.|+++++.++..+.+=.--|=+-.|=|++-.....-... ..+.+..
T Consensus 400 ~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~---~~~~f~p 476 (885)
T KOG2023|consen 400 EHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS---RDEYFKP 476 (885)
T ss_pred HHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC---hHhhhHH
Confidence 4678999999999999999999988888899999999999999998766666677777776655433312 2357999
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHH---hhccCCCHHHHHHHHHHHHH----------
Q 022417 155 LVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLK---TYVKHTNPRIRAKAAISISI---------- 215 (297)
Q Consensus 155 ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~---~~~~hKn~~VR~~aA~~L~~---------- 215 (297)
++..||.+..|+|+-|.|+|--|....-+...+ ..++..|. .+-+|||-.|-.-+-.-|..
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~ 556 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPA 556 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHH
Confidence 999999999999999999999999888777543 24455542 35578887665333222222
Q ss_pred --------HHHhh------------------------C------------------------------ch----------
Q 022417 216 --------CVTKM------------------------G------------------------------LE---------- 223 (297)
Q Consensus 216 --------~v~~~------------------------g------------------------------~~---------- 223 (297)
++++| | ++
T Consensus 557 YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfi 636 (885)
T KOG2023|consen 557 YIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFI 636 (885)
T ss_pred HHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceE
Confidence 22222 0 00
Q ss_pred --------hhhhc---c------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCChhh
Q 022417 224 --------GMKEL---G------LVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPID 286 (297)
Q Consensus 224 --------~l~~~---~------~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (297)
++.++ + ...+.+.+-.|+.|..||||+.+.-++.-|-..+..+--.-.+.|--+.-.+|+|..
T Consensus 637 I~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~ 716 (885)
T KOG2023|consen 637 IVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPEN 716 (885)
T ss_pred EEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhh
Confidence 00000 1 135788999999999999999999999988777654432344566666666666654
Q ss_pred HH
Q 022417 287 AQ 288 (297)
Q Consensus 287 a~ 288 (297)
..
T Consensus 717 is 718 (885)
T KOG2023|consen 717 IS 718 (885)
T ss_pred ch
Confidence 43
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.054 Score=47.15 Aligned_cols=149 Identities=17% Similarity=0.235 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc--Cc-hhHHHHHHhhccC
Q 022417 124 ALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI--TP-LPLLQKLKTYVKH 200 (297)
Q Consensus 124 ~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~--s~-~kll~~L~~~~~h 200 (297)
.|=-+++.++|||+..+.+ .+|++ ++.+.....|.+..||..|-.+|..++..- -. ..++..+...+.+
T Consensus 3 ~vR~n~i~~l~DL~~r~~~-~ve~~-------~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D 74 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPN-LVEPY-------LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVD 74 (178)
T ss_pred HHHHHHHHHHHHHHHhCcH-HHHhH-------HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcC
Confidence 3455899999999999998 66654 444455556889999999999998887773 23 3455777788899
Q ss_pred CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHhccchhhhHHHHH
Q 022417 201 TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRL-----PEAREAARSMVNSMYNAFTENEEHKQEAWQ 275 (297)
Q Consensus 201 Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~-----pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~ 275 (297)
.|+.||..+..++..+..+-++..+ ...+.+.+..+-+... +..|+.-++++..|.+...+ +++...--+
T Consensus 75 ~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~~l~~ 149 (178)
T PF12717_consen 75 ENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKESLVE 149 (178)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHHHHHH
Confidence 9999999999999999988654444 3444444444443221 46677778888888887775 445677888
Q ss_pred HHHHhcCChh
Q 022417 276 SFCQSNLQPI 285 (297)
Q Consensus 276 ~~~~~~l~~~ 285 (297)
++|++.+...
T Consensus 150 kl~~~~~~~~ 159 (178)
T PF12717_consen 150 KLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHc
Confidence 8888877765
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.022 Score=61.49 Aligned_cols=156 Identities=14% Similarity=0.080 Sum_probs=81.8
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh---------------HHHHH-------HHHHHHHHhcCcchHHHHHH
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLE---------------PNLEK-------VMAVVVKAMKNPRSALCKTS 129 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~---------------~~L~~-------i~~~v~~~vknLRS~Vsk~A 129 (297)
.++..|.++||..+..|+..|.++-. ++.+. ..|.. .+..+...+++.-..|-.+|
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~~~--~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA 795 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSVDD--VESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAA 795 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccC--cHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHH
Confidence 45677899999999999888776521 11110 01111 12334444455445555555
Q ss_pred HHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHH
Q 022417 130 IMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKA 209 (297)
Q Consensus 130 ~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~a 209 (297)
+.+++.+ |. . . .+. ..|+.-..++.-.||..|-.+|..+ .....++.|...+++.+..||..+
T Consensus 796 ~~aLg~~----g~-~--~---~~~---~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~~~~VR~~A 858 (897)
T PRK13800 796 LAALAEL----GC-P--P---DDV---AAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDPHLDVRKAA 858 (897)
T ss_pred HHHHHhc----CC-c--c---hhH---HHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCCCHHHHHHH
Confidence 5554443 22 0 0 011 1111112344556666666666543 334555666666666666666666
Q ss_pred HHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 210 AISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 210 A~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
+..|..+ -+ -....+.+.+.++|.+++||..|.++|.
T Consensus 859 ~~aL~~~---~~--------~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 859 VLALTRW---PG--------DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHhcc---CC--------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 6555442 01 2334455566777777777777777654
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.011 Score=58.78 Aligned_cols=179 Identities=18% Similarity=0.174 Sum_probs=98.2
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS 149 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~ 149 (297)
...+...|.++|=..+.-||+.+-.+. .+++. +.+.+.|.+.+.+...-|=|.|+.|+..+|+..+. .++.+
T Consensus 81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~-~~~~~- 152 (526)
T PF01602_consen 81 INSLQKDLNSPNPYIRGLALRTLSNIR--TPEMA----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD-LVEDE- 152 (526)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHH----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC-CHHGG-
T ss_pred HHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchh----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH-HHHHH-
Confidence 345556666666666666666665554 44544 23445556666677777777777777777766444 33321
Q ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch---hHHHHHH----hhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 150 DALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL---PLLQKLK----TYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~---kll~~L~----~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
+-+.+..|| .+.+..+...|-.++..+ .+++. .+++.+. ..++..+|-++..+.+++..+......
T Consensus 153 --~~~~l~~lL---~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 153 --LIPKLKQLL---SDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp --HHHHHHHHT---THSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred --HHHHHhhhc---cCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 233333433 455566666666666666 22211 2333332 222455555544444433322211000
Q ss_pred h-------------------hh--------hh----c-cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 223 E-------------------GM--------KE----L-GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 223 ~-------------------~l--------~~----~-~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
. .+ .. . ....+++.+.+++++.++++|+.+=..+..+...+
T Consensus 226 ~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 226 DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 0 00 00 0 15678999999999999999999988888774444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.031 Score=64.63 Aligned_cols=193 Identities=13% Similarity=0.163 Sum_probs=137.0
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhCh-hhh---------------hHH---H-------------------HHH
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHS-SLL---------------EPN---L-------------------EKV 110 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~-e~l---------------~~~---L-------------------~~i 110 (297)
.+..+++.|++.+++.+-.++..|-.|+.+.. +.+ ... + ...
T Consensus 531 AIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~gg 610 (2102)
T PLN03200 531 AVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDA 610 (2102)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhcccc
Confidence 45667778899999999999999888864221 100 000 0 123
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh-
Q 022417 111 MAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP- 189 (297)
Q Consensus 111 ~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k- 189 (297)
++.+...+++-...+-+.|+-+++.+|.. ++..... --....+++|+.-....+.=++.++..||..+..+.....
T Consensus 611 L~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~--~~d~~~a-vv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~ 687 (2102)
T PLN03200 611 LRTLIQLLSSSKEETQEKAASVLADIFSS--RQDLCES-LATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRK 687 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcC--ChHHHHH-HHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHH
Confidence 56777788888888999999999999963 2121110 0133455666665556666689999999999987655432
Q ss_pred -------HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 190 -------LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 190 -------ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
+++.|...+++.+..++..++..|.+++..-. ...+.+....+..+.+++.+|++++|++|=.++..|-..
T Consensus 688 ~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e--~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 688 VSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE--VAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH 765 (2102)
T ss_pred HHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch--HHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence 46677788899999999999999999998532 222233344578888899999999999999999998887
Q ss_pred hccc
Q 022417 263 FTEN 266 (297)
Q Consensus 263 ~~~~ 266 (297)
++-+
T Consensus 766 ~~~~ 769 (2102)
T PLN03200 766 FPVD 769 (2102)
T ss_pred CChh
Confidence 7643
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.038 Score=48.09 Aligned_cols=89 Identities=25% Similarity=0.269 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHhcCc--hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCH
Q 022417 169 FVCEEADRALNTMVESITP--LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLP 246 (297)
Q Consensus 169 FI~e~A~~AL~~Mv~~~s~--~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~p 246 (297)
-||..+-.+|.-++..-+. .+.++.|...+.+.++.||+.+..+|..++.. | -+.- ...++..+..++.|.+|
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d--~ik~--k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-D--MIKV--KGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-C--ceee--hhhhhHHHHHHHcCCCH
Confidence 4666777777777766654 47888999999999999999999999999874 2 1111 35555666678899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 022417 247 EAREAARSMVNSMYNA 262 (297)
Q Consensus 247 E~R~~aRk~l~~L~~~ 262 (297)
++|..|+..+..+...
T Consensus 78 ~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 78 EIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887766
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.33 Score=53.17 Aligned_cols=189 Identities=15% Similarity=0.165 Sum_probs=125.8
Q ss_pred HhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH-----HHcCCCCCCcc
Q 022417 74 IEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIF-----SAFGDKLLDST 148 (297)
Q Consensus 74 l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf-----~~l~~~~md~~ 148 (297)
+...++..-..+.+.|..|.+|..-|+......+...++.++-..+.---.--++|-.|+-.|. .-+|+ |+.
T Consensus 703 ~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~---e~~ 779 (1176)
T KOG1248|consen 703 LDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGN---EPA 779 (1176)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccc---cch
Confidence 3444566777888889999999998884444444444444444445555555667777777666 33444 231
Q ss_pred hhhHHHHHHHHHH-HhccccHHHHHHHHHHHHHHH----HhcCc---hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 149 SDALDNLVLQLLM-KASQDKKFVCEEADRALNTMV----ESITP---LPLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 149 ~~~ld~ll~~LL~-Ka~~sn~FI~e~A~~AL~~Mv----~~~s~---~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
.+.+.+.+..+-. =++++..-++.+ --|+..++ ..++. .+++..+..++...++.|+..+-.++-.+|..+
T Consensus 780 ~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence 1122222222200 124444444443 33443333 33443 355666678999999999999999999999999
Q ss_pred CchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccch
Q 022417 221 GLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENE 267 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~ 267 (297)
....+ ...++.|++.+..++.|..-.+|...|.++..|-+.|+-++
T Consensus 859 pe~~l-~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~e 904 (1176)
T KOG1248|consen 859 PEECL-SPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEE 904 (1176)
T ss_pred CHHHH-hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHH
Confidence 85544 55589999999999999999999999999999999998654
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.052 Score=55.95 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=140.3
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
|..+.-.|+++.=.....++..+-.++...|+.+.. ..-.|+-.++..+++-.-.+=|+|..|+|.+.+..|.++
T Consensus 690 lP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqd---- 765 (975)
T COG5181 690 LPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQD---- 765 (975)
T ss_pred cccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHH----
Confidence 445566677777777778899999999999997763 566788899999999999999999999999999999832
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
-++.++..| |..+.- .|.-...|+....+.|.|--++|.|.+--...+..|+.-+.+.+...++.+|... +++
T Consensus 766 --vL~~LlnnL--kvqeRq--~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s-~dY 838 (975)
T COG5181 766 --VLDILLNNL--KVQERQ--QRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQAS-LDY 838 (975)
T ss_pred --HHHHHHhcc--hHHHHH--hhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHH-HHH
Confidence 244444444 333333 3334455677778889999999999987778888999888888999999988432 344
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+-.+.+.+...+.|.+|--|..|-..+.+|
T Consensus 839 -vy~itPlleDAltDrD~vhRqta~nvI~Hl 868 (975)
T COG5181 839 -VYSITPLLEDALTDRDPVHRQTAMNVIRHL 868 (975)
T ss_pred -HHHhhHHHHhhhcccchHHHHHHHHHHHHH
Confidence 667889999999999999999998887765
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.053 Score=56.95 Aligned_cols=178 Identities=14% Similarity=0.176 Sum_probs=137.1
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
|..+.-.|++..=..+..++..+-+++...|+.+. ...-.||-.++..+++-.-.+=|+|..|+|.+.+..|.++
T Consensus 885 lPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqd---- 960 (1172)
T KOG0213|consen 885 LPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQD---- 960 (1172)
T ss_pred cccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHH----
Confidence 44555566666666667788899999999999775 3567788899999999999999999999999999999832
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
-++.++..| |..+. -.|.-...|+..+.+.|.|--+||.|..--...+..|+--+.+.++.+++.+|.- -+++
T Consensus 961 --VLatLlnnL--kvqeR--q~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigem-skdY 1033 (1172)
T KOG0213|consen 961 --VLATLLNNL--KVQER--QNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEM-SKDY 1033 (1172)
T ss_pred --HHHHHHhcc--hHHHH--HhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHH-hhhH
Confidence 234444443 33333 2333344566777788999999999998777888889988888899999998832 2334
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+-.+.+.+...+.|.++--|+.|-.++.+|
T Consensus 1034 -iyav~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1034 -IYAVTPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred -HHHhhHHHHHhhccccHHHHHHHHHHHHHH
Confidence 567888888999999999999999888765
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.012 Score=45.84 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=59.6
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSA 139 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~ 139 (297)
.++.+++.+.+.+|..+..++..|..++...++.....+. .+++.+.+.+.+--+.|.+.|+.+++.|...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 4667788888899999999999999999976766655555 7888888888888899999999999999754
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.025 Score=42.41 Aligned_cols=83 Identities=27% Similarity=0.264 Sum_probs=60.2
Q ss_pred HHHHHh-ccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHH
Q 022417 158 QLLMKA-SQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV 236 (297)
Q Consensus 158 ~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~ 236 (297)
.|+... .+.+..++..+-.+|. .....++++.|...++|.|+.||..++..|..+ | .+..++.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~--------~~~~~~~ 66 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDEDPMVRRAAARALGRI----G--------DPEAIPA 66 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H--------HHHTHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C--------CHHHHHH
Confidence 344444 4788999998888887 456678999999999999999999998766533 3 3455666
Q ss_pred HHHhccC-CCHHHHHHHHHHH
Q 022417 237 AAGLLND-RLPEAREAARSMV 256 (297)
Q Consensus 237 ~a~~l~D-~~pE~R~~aRk~l 256 (297)
+.+.+.| .+..+|..+-.++
T Consensus 67 L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 67 LIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHhhc
Confidence 6666655 5566788776654
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.23 Score=52.74 Aligned_cols=170 Identities=14% Similarity=0.119 Sum_probs=130.9
Q ss_pred CcCHHHHHHHHHHHHHHHhhCh-hhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 79 SKDWTNVCESLNNARRFALHHS-SLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~h~-e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
...|..+.+-+..+-.++..-- +++.+.+.+++. ..+.|.=.++-+.|..++..+...||. ... ...++.
T Consensus 490 d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~---~~l~d~v~~Ir~~aa~~l~~l~~~~G~-~w~-----~~~~i~ 560 (759)
T KOG0211|consen 490 DLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLR---TWLPDHVYSIREAAARNLPALVETFGS-EWA-----RLEEIP 560 (759)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHH---hhhhhhHHHHHHHHHHHhHHHHHHhCc-chh-----HHHhhH
Confidence 3369999999999988886444 555666665554 345666667777888888999999995 555 557788
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcC----chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHH
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESIT----PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSL 233 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s----~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~l 233 (297)
.+|.-.++++--.|-..-.++..++.-++ ...+++.+.....+.++.||-.+|++|..++..+..+.. -+.+
T Consensus 561 k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~----~~~v 636 (759)
T KOG0211|consen 561 KLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVR----DEEV 636 (759)
T ss_pred HHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHH----HHHH
Confidence 88887788777777777777777666654 457888888899999999999999999999998875433 3567
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 234 VQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 234 l~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.++.-.+..|.+.++|+.|-.++..+..
T Consensus 637 ~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 637 LPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 7777777789999999999988877543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.25 Score=52.55 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc-
Q 022417 107 LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI- 185 (297)
Q Consensus 107 L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~- 185 (297)
++.++..|.+.+.+...-|-|+|++|+..+|...+. .+... .+-+.+..|| .+++.-|...|-.+|..+.+..
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-lv~~~--~~~~~L~~LL---~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-LFYQQ--DFKKDLVELL---NDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-ccccc--chHHHHHHHh---cCCCccHHHHHHHHHHHHHHhCc
Confidence 456778889999999999999999999999987665 33211 1222222232 2455555555555554443321
Q ss_pred ------------------------------------C-----chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 186 ------------------------------------T-----PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 186 ------------------------------------s-----~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
+ ...++..+.+.++|.|+.|--.+++++..+...++.+
T Consensus 212 ~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~- 290 (746)
T PTZ00429 212 EKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE- 290 (746)
T ss_pred hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-
Confidence 1 0135555667788999999999988888776554322
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
+...-..++...+..+ ..++||+|+.+=+.+..+-..++
T Consensus 291 ~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 291 LIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred HHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH
Confidence 2221133444444433 56789999999888777655443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.15 Score=55.22 Aligned_cols=126 Identities=16% Similarity=0.214 Sum_probs=60.8
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChh--hhh---------------HHHHHH----HHHHHHHhcCcchHHHHH
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSS--LLE---------------PNLEKV----MAVVVKAMKNPRSALCKT 128 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e--~l~---------------~~L~~i----~~~v~~~vknLRS~Vsk~ 128 (297)
+..+...|+++||..+..|+..|.++....+. .+. ..|..+ ...+++.+++..-.|-++
T Consensus 654 ~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~ 733 (897)
T PRK13800 654 GPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIE 733 (897)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHH
Confidence 34455556667777777777777666432110 110 001110 123344555555555555
Q ss_pred HHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHH
Q 022417 129 SIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAK 208 (297)
Q Consensus 129 A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~ 208 (297)
|+.+++.+ +. .+ .|+.-..+.+..||..+..+|..+-.. ....++.|...+++.++.||..
T Consensus 734 Av~aL~~~----~~---------~~----~l~~~l~D~~~~VR~~aa~aL~~~~~~--~~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 734 AVRALVSV----DD---------VE----SVAGAATDENREVRIAVAKGLATLGAG--GAPAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHHHHhcc----cC---------cH----HHHHHhcCCCHHHHHHHHHHHHHhccc--cchhHHHHHHHhcCCCHHHHHH
Confidence 55555542 11 01 122223455666666666666555221 1123455555566666666666
Q ss_pred HHHHHH
Q 022417 209 AAISIS 214 (297)
Q Consensus 209 aA~~L~ 214 (297)
++..|.
T Consensus 795 A~~aLg 800 (897)
T PRK13800 795 ALAALA 800 (897)
T ss_pred HHHHHH
Confidence 665553
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.023 Score=44.31 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=72.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHhcC-------chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhcc
Q 022417 157 LQLLMKASQDKKFVCEEADRALNTMVESIT-------PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELG 229 (297)
Q Consensus 157 ~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~ 229 (297)
..|+....+.+..+++.+-.+|..|+.+.. ...+++.|...+.+.++.+|..++..|.+++..-. .......
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HHHHHHH
Confidence 333333445667899999999998886521 22577888888889999999999999999987532 2211111
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 230 LVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 230 ~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
...+++.+.+++.+.+.++|..+-.++..|
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 223677777788888999998887777654
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.014 Score=40.71 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Q 022417 82 WTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDI 136 (297)
Q Consensus 82 W~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dL 136 (297)
|..|..|+..|-+++...++.+.+.+.++++.+...++|..+.|-.+||-++|.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999865
|
... |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.058 Score=42.85 Aligned_cols=87 Identities=13% Similarity=0.058 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHh
Q 022417 84 NVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKA 163 (297)
Q Consensus 84 ~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka 163 (297)
.|..||.-|...++.-++.+...+.+|++.|+..+.+--+-|=-.||.++..+.+..+. .+-+ .+.+++..|.+-.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~-~~l~---~f~~IF~~L~kl~ 77 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARG-EILP---YFNEIFDALCKLS 77 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHH
Confidence 36789999999999888889999999999999999999999999999999999999888 4433 3788887777776
Q ss_pred ccccHHHHHHH
Q 022417 164 SQDKKFVCEEA 174 (297)
Q Consensus 164 ~~sn~FI~e~A 174 (297)
.|.+.=|+..|
T Consensus 78 ~D~d~~Vr~~a 88 (97)
T PF12755_consen 78 ADPDENVRSAA 88 (97)
T ss_pred cCCchhHHHHH
Confidence 77655555555
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.41 Score=50.72 Aligned_cols=165 Identities=20% Similarity=0.169 Sum_probs=116.5
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhh
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDA 151 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ 151 (297)
++...|+|++=..++||++.|-.+..+..+ ...+.+.|+|.|.+=.+.|-|---.-+--..+ .+|.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAE------eqpd--- 104 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAE------EQPD--- 104 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhh------cCCC---
Confidence 566678888889999999988777775544 56667788888887777777754333322222 2222
Q ss_pred HHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccH
Q 022417 152 LDNLVLQLLMKA-SQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGL 230 (297)
Q Consensus 152 ld~ll~~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~ 230 (297)
+--+-..-++|+ +|.|.-||..|-++|..|=-.+-.+-++.++..++.+-++.||+++|-.+-.|-. ++++ ..
T Consensus 105 LALLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e-----~k 178 (968)
T KOG1060|consen 105 LALLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPE-----QK 178 (968)
T ss_pred ceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChh-----hH
Confidence 111223455666 5689999999999999886666566677777889999999999999876554432 2221 14
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHH
Q 022417 231 VSLVQVAAGLLNDRLPEAREAARSMV 256 (297)
Q Consensus 231 ~~ll~~~a~~l~D~~pE~R~~aRk~l 256 (297)
+.+++.+.+++.|.+|-|--+|=-+|
T Consensus 179 ~qL~e~I~~LLaD~splVvgsAv~AF 204 (968)
T KOG1060|consen 179 DQLEEVIKKLLADRSPLVVGSAVMAF 204 (968)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 69999999999999999877665444
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.35 Score=48.45 Aligned_cols=138 Identities=14% Similarity=0.165 Sum_probs=93.9
Q ss_pred cCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHH
Q 022417 80 KDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQL 159 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~L 159 (297)
.|-..+..||..||.+..+.|..|...-+..+--++.+-+|.--.|.+.|-.++..+...+-. . ..+..+.+.+
T Consensus 342 ~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P-----~-~~I~~i~~~I 415 (516)
T KOG2956|consen 342 EDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP-----L-QCIVNISPLI 415 (516)
T ss_pred hhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc-----h-hHHHHHhhHH
Confidence 444455567778888888888888776677777778888888899999998887777655433 1 0244444333
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh
Q 022417 160 LMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE 227 (297)
Q Consensus 160 L~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~ 227 (297)
|. .|.. +.-.+-+.+-.|++.++-. .+.|.+..+..+-+..||.++..||..++.++|.+.+..
T Consensus 416 lt--~D~~--~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 416 LT--ADEP--RAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred hc--Ccch--HHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 33 3332 2223344555666666643 344555678889999999999999999999999766543
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.17 Score=43.08 Aligned_cols=96 Identities=17% Similarity=0.305 Sum_probs=77.1
Q ss_pred CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhc
Q 022417 186 TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND-RLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 186 s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D-~~pE~R~~aRk~l~~L~~~~~ 264 (297)
.+..++.+|..-++|+||.|...+..+|..|++.-|..-..+..-..+++.+.+++.+ .+++||.-...++......|.
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 3557888888888999999999999999999999996554445567888889999988 899999999999999999998
Q ss_pred cchh--hhHHHHHHHHHhc
Q 022417 265 ENEE--HKQEAWQSFCQSN 281 (297)
Q Consensus 265 ~~~~--~~~~~~~~~~~~~ 281 (297)
...+ .-.+.|+.+-.+-
T Consensus 114 ~~~~l~~i~~~y~~L~~~G 132 (144)
T cd03568 114 NDPSLSLMSDLYKKLKNEG 132 (144)
T ss_pred CCcccHHHHHHHHHHHHcC
Confidence 5542 1246666665443
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.84 Score=48.51 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=107.4
Q ss_pred cCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH-HHcCCCCCCcchhhHHHH
Q 022417 77 LDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIF-SAFGDKLLDSTSDALDNL 155 (297)
Q Consensus 77 L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf-~~l~~~~md~~~~~ld~l 155 (297)
+.|.+=.++++|++.+=+-..+.-+ +..+...|++.+. .|.-=-|- +-.+| ..+.+ ..|+ ..--.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-----mssLf~dViK~~~-trd~ElKr----L~ylYl~~yak--~~P~--~~lLa 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-----MSSLFPDVIKNVA-TRDVELKR----LLYLYLERYAK--LKPE--LALLA 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHH-hcCHHHHH----HHHHHHHHHhc--cCHH--HHHHH
Confidence 7788888999999866554443333 5566666666666 44432222 22333 23333 3332 23344
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHH
Q 022417 156 VLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQ 235 (297)
Q Consensus 156 l~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~ 235 (297)
+...++-..+.|.+||--|=++|..|=..-=-..+++.|...+.|+++.||+.+|.++..+.+. +.+-..+-| +..
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g---~~~ 169 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELG---LID 169 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhccc---HHH
Confidence 5555555567999999999998877632222335566677899999999999999999988764 222222222 444
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 236 VAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 236 ~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
....++.|.+|.|-..|-..+..++..
T Consensus 170 ~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 170 ILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 455667899999988887776666554
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.099 Score=54.32 Aligned_cols=100 Identities=17% Similarity=0.263 Sum_probs=77.8
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc--
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN-- 266 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~-- 266 (297)
-++|.+....+|-||.+|+.+..|+...+-..... +-..++++++.+-.+.+|-+||||..-=+++..|-+...+.
T Consensus 174 ~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 174 IMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred HhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 35899999999999999999988888777654422 22348999999999999999999999999988887666553
Q ss_pred ------------------hh---hhHHHHHHHHHhcCChhhHHHH
Q 022417 267 ------------------EE---HKQEAWQSFCQSNLQPIDAQSM 290 (297)
Q Consensus 267 ------------------~~---~~~~~~~~~~~~~l~~~~a~~~ 290 (297)
++ +.-|=|-+|+...+++..-+.-
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~ 296 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY 296 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence 11 3457899999888777655443
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.7 Score=44.05 Aligned_cols=177 Identities=19% Similarity=0.196 Sum_probs=112.8
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH--HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC--CC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL--EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK--LL 145 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L--~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~--~m 145 (297)
...+..+|.+.+=..+.-+++.|+|++.+... ....+ ++++..|+..+.+.-..|++.|+.++..|+..-..- .+
T Consensus 79 ~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~ 157 (503)
T PF10508_consen 79 QPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLF 157 (503)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHh
Confidence 34555778888878888999999999975544 33322 678899999999999999999999999998642110 11
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-------HhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMV-------ESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv-------~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
++. +...+..++.+. +.-+|-.+-..+..+. +.|...-+++.+...+++.-..|+..+..+|..+.+
T Consensus 158 ~~~---~~~~L~~l~~~~---~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 158 DSN---LLSKLKSLMSQS---SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred Ccc---hHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 211 233344444332 3333322222222221 111122367777888888999999999999999987
Q ss_pred h-hCchhhhhc-cHHHHHHHHHHhccCC-CHHHHHHHH
Q 022417 219 K-MGLEGMKEL-GLVSLVQVAAGLLNDR-LPEAREAAR 253 (297)
Q Consensus 219 ~-~g~~~l~~~-~~~~ll~~~a~~l~D~-~pE~R~~aR 253 (297)
. .|..-+... .++++...+...-.|. .....-.|+
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 3 333333333 3677777777776666 555555555
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.21 E-value=2.4 Score=40.41 Aligned_cols=155 Identities=13% Similarity=0.161 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhcCcc-hHHHHHHHH-HHHHHHHHcCCCCCCcch---hhHHHHHHHHHHHhccc--------cHHHH
Q 022417 105 PNLEKVMAVVVKAMKNPR-SALCKTSIM-AASDIFSAFGDKLLDSTS---DALDNLVLQLLMKASQD--------KKFVC 171 (297)
Q Consensus 105 ~~L~~i~~~v~~~vknLR-S~Vsk~A~~-tl~dLf~~l~~~~md~~~---~~ld~ll~~LL~Ka~~s--------n~FI~ 171 (297)
..+..+.+.+.+.+.+-. +.-.|.+|. |+|-++-..+. ..+-.. +.++.+......|.... +.-|.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~-d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGS-DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 345566677777777654 444667776 55555444344 444221 12222222222232221 24577
Q ss_pred HHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh--hhhccHHHHHHHHHHhcc
Q 022417 172 EEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG--MKELGLVSLVQVAAGLLN 242 (297)
Q Consensus 172 e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~--l~~~~~~~ll~~~a~~l~ 242 (297)
.+|=.+-..++..++.. ..++.|...+.+.+..||..+.+.|.-+.+...... ....+.+.+++.+..+..
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~ 283 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELAT 283 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 77777778888888772 355666778889999999999999999999766321 122358899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHh
Q 022417 243 DRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 243 D~~pE~R~~aRk~l~~L~~~~ 263 (297)
|+ .+..+|+=-...+..|
T Consensus 284 dS---~K~~sKkdrk~qRs~F 301 (309)
T PF05004_consen 284 DS---SKSRSKKDRKQQRSSF 301 (309)
T ss_pred hc---cCccchhHHHHHHHHH
Confidence 97 4555665555555544
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.097 Score=39.13 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=61.6
Q ss_pred HHHHHhcc-CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGL-DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
|+.+++.| ++.||..+..++..|.++ +. .++++.+...+++.-..|.++|+.+++.+ |.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~~------ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL---GD-------PEAIPALIELLKDEDPMVRRAAARALGRI----GD------ 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC---TH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC----HH------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc---CC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC------
Confidence 35677888 899999999988777633 22 25677777788999999999999999976 22
Q ss_pred hhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Q 022417 149 SDALDNLVLQLLMKASQ-DKKFVCEEADRALN 179 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~ 179 (297)
+..+..|.....+ .+.+++..|..||.
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2233444443444 45778999988874
|
|
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.86 Score=37.85 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=65.4
Q ss_pred CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHH
Q 022417 186 TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND---RLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 186 s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D---~~pE~R~~aRk~l~~L~~~ 262 (297)
.+..++.+|...++|+||.+...+..+|..|++.-|..-....+-..++..+.+++.. .++++|.-...++......
T Consensus 34 ~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 34 GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4667889999899999999999999999999999886544444444444446667765 5889999999999999999
Q ss_pred hccc
Q 022417 263 FTEN 266 (297)
Q Consensus 263 ~~~~ 266 (297)
|+.+
T Consensus 114 f~~~ 117 (133)
T cd03561 114 FGGH 117 (133)
T ss_pred hcCC
Confidence 9875
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.78 E-value=5 Score=42.80 Aligned_cols=190 Identities=16% Similarity=0.314 Sum_probs=128.8
Q ss_pred CCc-CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---cCCCCCCc------
Q 022417 78 DSK-DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSA---FGDKLLDS------ 147 (297)
Q Consensus 78 ~s~-dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~---l~~~~md~------ 147 (297)
.|. .|+.+-.|++.+.+++++----+.++|..++..|...+++=--.|=--+..+++.+|+. ||-..||.
T Consensus 521 ~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLw 600 (1172)
T KOG0213|consen 521 GSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLW 600 (1172)
T ss_pred ccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 455 89999999999999998766666677777777776666653222222233333333332 33222222
Q ss_pred ---------------------------c--------------------hhhHHHHHHHHHHHhcc----ccHHHHHHHHH
Q 022417 148 ---------------------------T--------------------SDALDNLVLQLLMKASQ----DKKFVCEEADR 176 (297)
Q Consensus 148 ---------------------------~--------------------~~~ld~ll~~LL~Ka~~----sn~FI~e~A~~ 176 (297)
+ .+++..++...+++.++ +-.|++++.-.
T Consensus 601 kgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp 680 (1172)
T KOG0213|consen 601 KGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILP 680 (1172)
T ss_pred HHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhH
Confidence 1 34566677777777765 45677666432
Q ss_pred -----------------------HHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh------
Q 022417 177 -----------------------ALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE------ 227 (297)
Q Consensus 177 -----------------------AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~------ 227 (297)
+--.+++.+.....+..+..-.++-+++-|..++..+.+++.++|...+-+
T Consensus 681 ~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~l 760 (1172)
T KOG0213|consen 681 EFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERL 760 (1172)
T ss_pred HHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHH
Confidence 334667777778888888888889999999999999999999887533211
Q ss_pred ---------------------cc-------------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccch
Q 022417 228 ---------------------LG-------------LVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENE 267 (297)
Q Consensus 228 ---------------------~~-------------~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~ 267 (297)
|| +..|..++...|+..+|.+|..|-.++..+-..+..-.
T Consensus 761 idgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ 834 (1172)
T KOG0213|consen 761 IDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCG 834 (1172)
T ss_pred HHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhcc
Confidence 11 35677778888999999999999999888776665443
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=4.8 Score=45.70 Aligned_cols=141 Identities=16% Similarity=0.151 Sum_probs=102.8
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhCh-hhhhHHHHHHHHHHHHHhcCcchHHHHHHHH---HHHHHHHHcCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHS-SLLEPNLEKVMAVVVKAMKNPRSALCKTSIM---AASDIFSAFGDKL 144 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~-e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~---tl~dLf~~l~~~~ 144 (297)
.+++++.++.+..|..|..+..-|+-|..-|| +.+...+.++-..+...|+|..=+|=.+|-. +++.++-..++ .
T Consensus 1040 Il~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d-~ 1118 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD-V 1118 (1702)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-c
Confidence 35567778889999999999999999998887 4566789999999999999988888766544 45555555554 2
Q ss_pred CCcc--hhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcC------chhHHHHHHhhccCCCHHHHHHHH
Q 022417 145 LDST--SDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESIT------PLPLLQKLKTYVKHTNPRIRAKAA 210 (297)
Q Consensus 145 md~~--~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s------~~kll~~L~~~~~hKn~~VR~~aA 210 (297)
-.+. -+.++.+++-||.+..- +-+=||..+-.++.-|+++-+ -+++++.|....+.-.+.|--+++
T Consensus 1119 ~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls 1193 (1702)
T KOG0915|consen 1119 TNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLS 1193 (1702)
T ss_pred CCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHH
Confidence 2221 34588888888887754 457788888888888888854 257888887766666666644443
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=1.7 Score=44.65 Aligned_cols=150 Identities=16% Similarity=0.166 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc
Q 022417 106 NLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI 185 (297)
Q Consensus 106 ~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~ 185 (297)
-++.+++.|..+..+.-++|---||..+-.+.+..+...+. . ++++..+|=+=.+++..-++..| .-|+-.++-+
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~-~---Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdI 155 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLV-Y---FNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDI 155 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCccc-c---hHHHHHHHHHHhcCCccccccHH-HHHHHHHHHh
Confidence 48899999999999999999999999999999998884444 3 66666665444455554454443 3344444332
Q ss_pred --------CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 186 --------TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 186 --------s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
+-...+|.|.......||..|.....|+..+-..-+ -.+.++ ++.+++.+-.+++|.++|+|...-.++.
T Consensus 156 Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~y-l~~~ldGLf~~LsD~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISY-LPSLLDGLFNMLSDSSDEVRTLTDTLLS 233 (675)
T ss_pred ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhc-chHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 224578888777777899999999999987765533 223344 8999999999999999999987777665
Q ss_pred HHHHH
Q 022417 258 SMYNA 262 (297)
Q Consensus 258 ~L~~~ 262 (297)
.+-..
T Consensus 234 ~fL~e 238 (675)
T KOG0212|consen 234 EFLAE 238 (675)
T ss_pred HHHHH
Confidence 54333
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.33 E-value=3.5 Score=44.37 Aligned_cols=206 Identities=15% Similarity=0.200 Sum_probs=134.7
Q ss_pred cccHHHHHhccCCc-CHHHHHHHHHHHHHHHhhChh-hhhH-HHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHcCC
Q 022417 67 ESMIPCLIEGLDSK-DWTNVCESLNNARRFALHHSS-LLEP-NLEKVMAVVVKAMK-NPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 67 e~~l~~~l~~L~s~-dW~~~~eaL~~LRrLa~~h~e-~l~~-~L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
+..++.++.+|..+ |=..++++|..+=.+.....| .+.. -+..+++.++..++ .-.=-+--.||.|+..||..|..
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34578899999777 999999999999888866554 3332 35666776666655 12256777999999999999998
Q ss_pred CCCCcchhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcCchhHHH-----HHHhhccCCCHHHHHHHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESITPLPLLQ-----KLKTYVKHTNPRIRAKAAISISIC 216 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s~~kll~-----~L~~~~~hKn~~VR~~aA~~L~~~ 216 (297)
...-..+ ...++.|+.|..- .=-=++|.+-.||..+ ....|.-+|. +.+.|..=-+.-+++.+--...||
T Consensus 246 -S~a~vV~--~~aIPvl~~kL~~IeyiDvAEQ~LqALE~i-SR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 246 -SSAIVVD--EHAIPVLLEKLLTIEYIDVAEQSLQALEKI-SRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANC 321 (1051)
T ss_pred -hhheeec--ccchHHHHHhhhhhhhhHHHHHHHHHHHHH-HhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443211 1256666666543 2111344444444433 2234444443 334566667777888888889999
Q ss_pred HHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcC
Q 022417 217 VTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNL 282 (297)
Q Consensus 217 v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l 282 (297)
|+.+..+.. +| +-..++.+..+++-.+-..-++.--++..+-+.|.. +.+.++++|.--|
T Consensus 322 Cksi~sd~f-~~-v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h----~~~kLdql~s~dL 381 (1051)
T KOG0168|consen 322 CKSIRSDEF-HF-VMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH----GPDKLDQLCSHDL 381 (1051)
T ss_pred HhcCCCccc-hH-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc----ChHHHHHHhchhH
Confidence 999987642 22 455677777788777777777777777777776654 4477777776544
|
|
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.77 Score=38.86 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=73.2
Q ss_pred cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Q 022417 185 ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN-DRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 185 ~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~-D~~pE~R~~aRk~l~~L~~~~ 263 (297)
..+..++.+|..-++|+|+.|...+..+|..|++.-|..-.....-..+++.+.+++. ..+++||.-...++......|
T Consensus 37 ~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 37 VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 3466788999989999999999999999999999988654444444666666666665 578899999999999999999
Q ss_pred ccchh--hhHHHHHHHHHh
Q 022417 264 TENEE--HKQEAWQSFCQS 280 (297)
Q Consensus 264 ~~~~~--~~~~~~~~~~~~ 280 (297)
....+ .-.+.|+.+-.+
T Consensus 117 ~~~~~l~~i~~~y~~L~~~ 135 (142)
T cd03569 117 RNKPQLKYVVDTYQILKAE 135 (142)
T ss_pred CCCcccHHHHHHHHHHHHc
Confidence 76543 233666666544
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.22 E-value=4.9 Score=44.47 Aligned_cols=180 Identities=11% Similarity=0.139 Sum_probs=127.3
Q ss_pred CHHHHHHHHHHHHHHHhh--ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHH
Q 022417 81 DWTNVCESLNNARRFALH--HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQ 158 (297)
Q Consensus 81 dW~~~~eaL~~LRrLa~~--h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~ 158 (297)
+=..+-.+...|+.|... ..-.....+..|...+.+.+.+.-+..-+.++.|+.-|++.++. ..... +...++-
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~-e~~~~---i~k~I~E 742 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA-EHCDL---IPKLIPE 742 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH-HHHHH---HHHHHHH
Confidence 445566777788888876 11233467888888999999999999999999999999999986 33322 4444443
Q ss_pred HHHHhccccHHHHHHHHHHHHHHH--HhcC-----c-----hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 159 LLMKASQDKKFVCEEADRALNTMV--ESIT-----P-----LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 159 LL~Ka~~sn~FI~e~A~~AL~~Mv--~~~s-----~-----~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
++.-..+-|.--+..|-.+|..|. +... | ...+..|..|.-..++.++.+.-.-+..++...+ ..+.
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~-~~ld 821 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK-NILD 821 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 333335566677888888888887 3221 1 2355566667777788888776444555555443 1222
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.--++.+++.+.-+|..+++|+|.+|=..+..+-..|+.
T Consensus 822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 223799999999999999999999999999988777764
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.7 Score=44.60 Aligned_cols=163 Identities=16% Similarity=0.232 Sum_probs=120.3
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHH-cCCCCCCcchhhHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHhcCch--
Q 022417 113 VVVKAMKNPRSALCKTSIMAASDIFSA-FGDKLLDSTSDALDNLVLQLLMKASQDK-KFVCEEADRALNTMVESITPL-- 188 (297)
Q Consensus 113 ~v~~~vknLRS~Vsk~A~~tl~dLf~~-l~~~~md~~~~~ld~ll~~LL~Ka~~sn-~FI~e~A~~AL~~Mv~~~s~~-- 188 (297)
.+...+.++--..+-.|-+|++.+... +.. . .-++++..|....++.. .-+.+..-.||..||+++.|.
T Consensus 94 ~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~-n------~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl 166 (859)
T KOG1241|consen 94 NILRTLGSPEPRRPSSAAQCVAAIACIELPQ-N------QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVL 166 (859)
T ss_pred HHHHHcCCCCCCccchHHHHHHHHHHhhCch-h------hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHH
Confidence 455566666566666778888888753 333 1 23567777777787743 369999999999999999985
Q ss_pred -----hHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 189 -----PLLQKLKTYVK--HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 189 -----kll~~L~~~~~--hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.++.++..|.. ..+..||-++-.+|.++++-.+..--.+..++-+++.+....+..+.++|.+|-.+|..+-.
T Consensus 167 ~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 167 EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMS 246 (859)
T ss_pred HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHH
Confidence 34555666653 68899999999999999997764333455688999999999999999999999999888655
Q ss_pred Hhccc---------------------hh---hhHHHHHHHHHhcC
Q 022417 262 AFTEN---------------------EE---HKQEAWQSFCQSNL 282 (297)
Q Consensus 262 ~~~~~---------------------~~---~~~~~~~~~~~~~l 282 (297)
.|.+. +| ++-|=|.++|.+-.
T Consensus 247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEi 291 (859)
T KOG1241|consen 247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEI 291 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 55432 11 46688888887654
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=94.12 E-value=2.1 Score=36.93 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=57.3
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhC-hhhhhHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHcCC
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHH-SSLLEPNLEKVMAVVVKAMKNPR-SALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h-~e~l~~~L~~i~~~v~~~vknLR-S~Vsk~A~~tl~dLf~~l~~ 142 (297)
.+...|.|+++..+..|+..++-++... ++.|...-..-+..+.+.+++.- -.+-+.||.++++||...++
T Consensus 29 ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 29 RINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445668999999999999999999987 88887777778887777777533 34667899999999987665
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=2.6 Score=49.56 Aligned_cols=187 Identities=12% Similarity=0.076 Sum_probs=122.2
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPN-LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~-L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..+++.|++.+=+.+..|+..++-|+..+.+.-... =...++.+++.+.+....+.++|+-+++.|... .. ....
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~-qir~ 524 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SE-DIRA 524 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cH-HHHH
Confidence 35566666777777788888888888887665432211 134677888888899999999999999999852 11 1100
Q ss_pred chhhH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhh
Q 022417 148 TSDAL--DNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGM 225 (297)
Q Consensus 148 ~~~~l--d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l 225 (297)
.+ ..+++.|+.-..+.+.-+.+.|-.||..++.+. ....++.|...+.+.++.+...+...+.+++...+...+
T Consensus 525 ---iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~-d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~ 600 (2102)
T PLN03200 525 ---CVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA-DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL 600 (2102)
T ss_pred ---HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc-chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH
Confidence 01 022333333223344556788999998887654 345567777778889999998888888777764433221
Q ss_pred hhcc--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 226 KELG--LVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 226 ~~~~--~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
...+ ...-++.+.+++..+++++++.|-.++..++.
T Consensus 601 ~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 601 VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 1111 13456667777888899999888766655543
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.51 Score=37.09 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=65.2
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
..++.++..|.+..=--|..||..||+|+..+. .-...++.+...+...+++.-|-|==+|+.+++.|...+++
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 467889999999999999999999999999777 33345788999999999999999999999999999988766
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.13 Score=31.96 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.5
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 190 LLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 190 ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
++|.|...+++.++.||..++.+|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478889999999999999999999888764
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=93.92 E-value=1 Score=37.52 Aligned_cols=91 Identities=15% Similarity=0.302 Sum_probs=69.0
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHhc
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRL--PEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~--pE~R~~aRk~l~~L~~~~~ 264 (297)
+..++..|..-++|+||.+...+..+|..|++.-|..-.....-..+++.+.+.+.+.. +++|.-...++......|.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 55678888888999999999999999999999988654444455667777777776644 4589999999999999997
Q ss_pred cchh--hhHHHHHHH
Q 022417 265 ENEE--HKQEAWQSF 277 (297)
Q Consensus 265 ~~~~--~~~~~~~~~ 277 (297)
...+ .-.+.|+.+
T Consensus 115 ~~~~~~~i~~~y~~L 129 (133)
T smart00288 115 NDPDLSQIVDVYDLL 129 (133)
T ss_pred CCCCchHHHHHHHHH
Confidence 6443 233555544
|
Unpublished observations. Domain of unknown function. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.74 E-value=4.2 Score=38.21 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=95.8
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+..++..+.+.+|..+..+...+..+ ...+.++.+...+.+....|-..|..+ +|+ .-++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~a-------Lg~-~~~~ 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADA-------LGE-LGDP 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHH-------HHc-cCCh
Confidence 4778888899999999999888662222 246677788888888777777777774 444 2232
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHH------------HHHHHHHHHHH
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPR------------IRAKAAISISI 215 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~------------VR~~aA~~L~~ 215 (297)
. .++.++.. |.+ +.+.++|..+..+|..+- ..+.+..|...+++.+.. +|..++.-+
T Consensus 105 ~--a~~~li~~-l~~--d~~~~vR~~aa~aL~~~~----~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l-- 173 (335)
T COG1413 105 E--AVPPLVEL-LEN--DENEGVRAAAARALGKLG----DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEAL-- 173 (335)
T ss_pred h--HHHHHHHH-HHc--CCcHhHHHHHHHHHHhcC----chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHH--
Confidence 2 23333332 222 799999999999998773 334455555555555532 333222211
Q ss_pred HHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 216 CVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 216 ~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
-..+.+.....+..++.|.+..+|..+-.++..+.
T Consensus 174 ----------~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~ 208 (335)
T COG1413 174 ----------GELGDPEAIPLLIELLEDEDADVRRAAASALGQLG 208 (335)
T ss_pred ----------HHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhh
Confidence 12344555666666677777777777766665543
|
|
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.7 Score=38.69 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=64.8
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPE----AREAARSMVNSMYNA 262 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE----~R~~aRk~l~~L~~~ 262 (297)
+..++..|...++|+||.+...+..+|..|++.-|..-....+-..++..+.+++.+.... ||+-...++......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999999999998865544555567777788777654332 899999999999999
Q ss_pred hccch
Q 022417 263 FTENE 267 (297)
Q Consensus 263 ~~~~~ 267 (297)
|....
T Consensus 120 f~~~~ 124 (140)
T PF00790_consen 120 FKSDP 124 (140)
T ss_dssp TTTST
T ss_pred HCCCC
Confidence 95544
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.59 E-value=2.2 Score=43.90 Aligned_cols=182 Identities=14% Similarity=0.137 Sum_probs=140.1
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhh----hHHHHHHHHHH-HHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLL----EPNLEKVMAVV-VKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l----~~~L~~i~~~v-~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+..+|.++-++++..|--.+.++++ +.+ ...+.+++..+ ..-+.++-+-.-|-+++.++...-.+|. +-.
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk---~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~-~~~ 79 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVK---DLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGI-KDA 79 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHH---HHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhcc-ccH
Confidence 45577888889999999999999987 223 25677888744 4445567777888999999999999999 433
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
+ .+..++++.+.--+|..-=||--|..+|..+++-+-. ..+...|+....+-.+.||. .|.++.++++.+
T Consensus 80 ~---Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdI 155 (675)
T KOG0212|consen 80 G---YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDI 155 (675)
T ss_pred H---HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHh
Confidence 3 5888999999888888888888888899888776643 24556666666666666765 678999999987
Q ss_pred CchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 221 GLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
-.+.-..|.++.+++.+..=+.+-+|.+|.+-=.=+..|+.
T Consensus 156 Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds 196 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS 196 (675)
T ss_pred ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc
Confidence 76665568899999999999999999999987655555443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.49 E-value=5.5 Score=43.44 Aligned_cols=131 Identities=20% Similarity=0.176 Sum_probs=100.1
Q ss_pred chHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC---chhHHHHHHhhc
Q 022417 122 RSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT---PLPLLQKLKTYV 198 (297)
Q Consensus 122 RS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s---~~kll~~L~~~~ 198 (297)
=|++-.+.|--++|+...||. .+..+ -..++..|+...++.-.-||.-|-.+|..+..+|+ ...++..|..++
T Consensus 146 ~sai~~e~lDil~d~lsr~g~-ll~~f---h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L 221 (1233)
T KOG1824|consen 146 VSAIKCEVLDILADVLSRFGT-LLPNF---HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGL 221 (1233)
T ss_pred chhhHHHHHHHHHHHHHhhcc-cCcch---HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 345667788889999999999 66544 34555566666667778899999999999999998 458899998876
Q ss_pred cC--CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHH
Q 022417 199 KH--TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLL---NDRLPEAREAARSMVNSM 259 (297)
Q Consensus 199 ~h--Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l---~D~~pE~R~~aRk~l~~L 259 (297)
.. ++..+|. .-++|..++...|.+ .+..++++++.++++. +..+-|.|++.-+++-.+
T Consensus 222 ~~~~q~~~~rt-~Iq~l~~i~r~ag~r--~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~f 284 (1233)
T KOG1824|consen 222 SNRTQMSATRT-YIQCLAAICRQAGHR--FGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESF 284 (1233)
T ss_pred CCCCchHHHHH-HHHHHHHHHHHhcch--hhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 53 4445554 457888888887743 2334899999999999 888999999988887654
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.15 Score=35.26 Aligned_cols=53 Identities=26% Similarity=0.232 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 203 PRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 203 ~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
|.||..++..|.++.+..+ +.+ ......+++.+..+++|.+++||..|=.++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~-~~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCP-ELL-QPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTH-HHH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccH-HHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5789989888877444322 222 2237899999999999999999999876654
|
... |
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.5 Score=37.05 Aligned_cols=79 Identities=11% Similarity=0.158 Sum_probs=62.7
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND------RLPEAREAARSMVNSMY 260 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D------~~pE~R~~aRk~l~~L~ 260 (297)
+...+.+|..-++|+|+.|...+-.+|..|++.-|..--.......++.-+.+++.+ ..++||+-...++....
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 346778888888999999999999999999999996543344445666666666653 57899999999999999
Q ss_pred HHhcc
Q 022417 261 NAFTE 265 (297)
Q Consensus 261 ~~~~~ 265 (297)
..|.+
T Consensus 116 ~~f~~ 120 (139)
T cd03567 116 LELPH 120 (139)
T ss_pred HHhcc
Confidence 99974
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.5 Score=38.81 Aligned_cols=117 Identities=13% Similarity=0.185 Sum_probs=91.8
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhh-ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH---HHHcCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALH-HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDI---FSAFGDK 143 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~-h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dL---f~~l~~~ 143 (297)
.-|.-++++|...+=--++=|...+..|..+ .++-+.+.+++++..+...+.+--..|.+.++.++..| ....|.
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~- 116 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE- 116 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH-
Confidence 4577999999999888889999999999998 88999999999999999999999999999999999999 555665
Q ss_pred CCCcchhhHHHHHHHHH--H-Hh---c-----cccHHHHHHHHHHHHHHHHhcCch
Q 022417 144 LLDSTSDALDNLVLQLL--M-KA---S-----QDKKFVCEEADRALNTMVESITPL 188 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL--~-Ka---~-----~sn~FI~e~A~~AL~~Mv~~~s~~ 188 (297)
.+-|. ...++++|= + |. + ...+=+++-.+.+|..+-++..+.
T Consensus 117 aLvPy---yrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 117 ALVPY---YRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHH---HHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 55543 555554442 1 11 1 234667888888888887777654
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.94 E-value=5.9 Score=41.99 Aligned_cols=171 Identities=18% Similarity=0.183 Sum_probs=117.3
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
.+..++.++.++|=..++..|..|++|.....+.=...+..+...+..-+.+--+.|=.+|..+++.+= |. .-|++
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ---~d-~~dee 161 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ---GD-PKDEE 161 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh---cC-CCCCc
Confidence 456778888999999999999999999985554444556777778888888888888889988887654 23 44443
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
. .+..++..|+. .|.+. +..+|...|+ .....-+|.+..-+.+-+..+|+.+- ..|++++. +...
T Consensus 162 ~-~v~n~l~~liq--nDpS~----EVRRaaLsnI--~vdnsTlp~IveRarDV~~anRrlvY---~r~lpkid---~r~l 226 (892)
T KOG2025|consen 162 C-PVVNLLKDLIQ--NDPSD----EVRRAALSNI--SVDNSTLPCIVERARDVSGANRRLVY---ERCLPKID---LRSL 226 (892)
T ss_pred c-cHHHHHHHHHh--cCCcH----HHHHHHHHhh--ccCcccchhHHHHhhhhhHHHHHHHH---HHhhhhhh---hhhh
Confidence 1 24455544433 23333 3333332222 23446678888888888899998764 34556652 2233
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
..++-+..+-.+++|+.-.+|.+..+++..
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 467888888889999999999888887764
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.82 E-value=3.3 Score=41.93 Aligned_cols=183 Identities=18% Similarity=0.147 Sum_probs=124.1
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE--PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~--~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
+..+.....|..|+.++.....+-.+.. |..+. +.|..++..+..-.+++-..+-.-||.+++.++.....+.+..
T Consensus 219 l~q~~ss~ts~~~~~ritd~Af~ael~~--~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th 296 (533)
T KOG2032|consen 219 LAQLLSSITSEKENGRITDIAFFAELKR--PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH 296 (533)
T ss_pred HhhcccccchhcccchHHHHHHHHHHhC--cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh
Confidence 4444555567789999988776666553 44454 7789999999999999999999999999999998766645554
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHH-------hhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLK-------TYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~-------~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
-...+|.++.+|.. +.|.=|.-++-.+|..++...+.-.+.+.+. .-..+-++.+|..+-.++..+.+.-
T Consensus 297 ~~~~ldaii~gL~D---~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 297 KTTQLDAIIRGLYD---DLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred HHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 44457778877754 3445566667777777777666544444332 2445778888887777777776665
Q ss_pred CchhhhhccHHHHHHHHHHh---ccCCCHHHHHHHHHHHHH
Q 022417 221 GLEGMKELGLVSLVQVAAGL---LNDRLPEAREAARSMVNS 258 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~---l~D~~pE~R~~aRk~l~~ 258 (297)
|.. -..+-.+.+.+..+.| ++|.+|-+=.+-|..+..
T Consensus 374 g~~-~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~ 413 (533)
T KOG2032|consen 374 GGG-WEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRT 413 (533)
T ss_pred CCC-chhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHh
Confidence 533 2333356666555555 489999666665555444
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.28 E-value=16 Score=40.13 Aligned_cols=183 Identities=14% Similarity=0.204 Sum_probs=127.2
Q ss_pred HHHhccCCcCHHHHHHHHHHHH-HHHhhChhhh-hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch
Q 022417 72 CLIEGLDSKDWTNVCESLNNAR-RFALHHSSLL-EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS 149 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LR-rLa~~h~e~l-~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~ 149 (297)
.+++.+.|.|=-=|+=|.+.|- +|-+ ..-.+ .....+++..+++.+.+-.-.|.-.|+.|+|-|.+..+.+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqk-dsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~------ 81 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQK-DSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKED------ 81 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHh-hhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHH------
Confidence 5677777776666666766553 2322 22112 3567899999999999999999999999999999665552
Q ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-----------hhHHHHHHhhc--cCCCHHHHHHHHHHHHHH
Q 022417 150 DALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-----------LPLLQKLKTYV--KHTNPRIRAKAAISISIC 216 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-----------~kll~~L~~~~--~hKn~~VR~~aA~~L~~~ 216 (297)
.+..++..|..+....+.=.|+-..-+|..|+.+++| .++++.|..+. +.-.-.|+.-+...+...
T Consensus 82 -~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ 160 (1233)
T KOG1824|consen 82 -QLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADV 160 (1233)
T ss_pred -HHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHH
Confidence 3677888888887778888888999999999999987 23445554332 234445777777778888
Q ss_pred HHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 217 VTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 217 v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
+.+.|. -+-.| +..++.++.--+...-.-+|.-|=.++..|-....
T Consensus 161 lsr~g~-ll~~f-h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 161 LSRFGT-LLPNF-HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHhhcc-cCcch-HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 888773 22223 56677777666666666677666666666655443
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=92.27 E-value=10 Score=35.61 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=101.6
Q ss_pred HHHHH-hccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLI-EGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l-~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
+..++ -.+.+.|=.-|..|+..+--.+....+.-...+.-+...+ .+=...|.-.|+.++.|+...+|...++..
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~----~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQAL----QKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 44444 4667888788999988887777777766555555554444 222788889999999999999998666654
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh--hCchhhh
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTK--MGLEGMK 226 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~--~g~~~l~ 226 (297)
... + .......++..+..++.+-++.+|..+++.+..++-. +.+
T Consensus 104 ~~~--------------~----------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---- 149 (298)
T PF12719_consen 104 SDN--------------D----------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---- 149 (298)
T ss_pred hcc--------------C----------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----
Confidence 110 0 3344455677777777777999999999888887642 332
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchh
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEE 268 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~ 268 (297)
...++..+.-.--+..-+--..-|+++..++.+|.....
T Consensus 150 ---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~ 188 (298)
T PF12719_consen 150 ---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSP 188 (298)
T ss_pred ---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCH
Confidence 122222222111111111223678888889998877653
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.4 Score=45.50 Aligned_cols=188 Identities=17% Similarity=0.127 Sum_probs=99.5
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh---HHH------------------------HHHHHHHHHHhcCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE---PNL------------------------EKVMAVVVKAMKNP 121 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~---~~L------------------------~~i~~~v~~~vknL 121 (297)
.+..+-.-|++..-..++.|+..|-+|+...|+.+. ..+ .+.+..+++.|-+.
T Consensus 304 ~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sf 383 (898)
T COG5240 304 TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSF 383 (898)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 444455567888999999999999999987775432 111 11222222222222
Q ss_pred chHHH----HHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc-cc-----------HHHHHHHHHHHHHHHHhc
Q 022417 122 RSALC----KTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ-DK-----------KFVCEEADRALNTMVESI 185 (297)
Q Consensus 122 RS~Vs----k~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~-sn-----------~FI~e~A~~AL~~Mv~~~ 185 (297)
=+-+| .-++-++--|+-.|.. ..+. .++-+...|+.+.+- -+ .|+-+.-++||..+|+.+
T Consensus 384 vhD~SD~FKiI~ida~rsLsl~Fp~-k~~s---~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fI 459 (898)
T COG5240 384 VHDMSDGFKIIAIDALRSLSLLFPS-KKLS---YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFI 459 (898)
T ss_pred HHhhccCceEEeHHHHHHHHhhCcH-HHHH---HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 22222 2233333333333333 2222 355566666654432 22 333455567777777664
Q ss_pred ---Cch----hHHHHHH-hhccCCCH--HHHHHHHH-HHHHHHHhhCc-hhhhhc--------cHHHHHHHHHHhccCCC
Q 022417 186 ---TPL----PLLQKLK-TYVKHTNP--RIRAKAAI-SISICVTKMGL-EGMKEL--------GLVSLVQVAAGLLNDRL 245 (297)
Q Consensus 186 ---s~~----kll~~L~-~~~~hKn~--~VR~~aA~-~L~~~v~~~g~-~~l~~~--------~~~~ll~~~a~~l~D~~ 245 (297)
... +++..|- .|-+.++| -||--.-+ .|.+-+-+.++ ..+..| --..+..++.+|++|++
T Consensus 460 EDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~D 539 (898)
T COG5240 460 EDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQD 539 (898)
T ss_pred hhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhccc
Confidence 433 4555553 35555555 23321111 11111112111 111122 24788889999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 022417 246 PEAREAARSMVNSMY 260 (297)
Q Consensus 246 pE~R~~aRk~l~~L~ 260 (297)
-|+|+-|--++..++
T Consensus 540 deVRdrAsf~l~~~~ 554 (898)
T COG5240 540 DEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999987777665
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.18 E-value=5.8 Score=45.10 Aligned_cols=197 Identities=18% Similarity=0.198 Sum_probs=114.9
Q ss_pred ccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCc-----------------------chHHHHHH--H
Q 022417 76 GLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNP-----------------------RSALCKTS--I 130 (297)
Q Consensus 76 ~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknL-----------------------RS~Vsk~A--~ 130 (297)
++-|+==+.+-=+++++-.|+++.+..+.+.++++++.+......+ |-+.+|+. +
T Consensus 1139 gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmm 1218 (1702)
T KOG0915|consen 1139 GIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMM 1218 (1702)
T ss_pred CcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHH
Confidence 3345555667778999999999999999998888888776655444 44333332 2
Q ss_pred HHHHHHHHHcCCCCCCcchhhHHHHHHHH---HHHhcc------ccHHHHHHHHHHHHHHHHhcC-chhHHHHHHhhccC
Q 022417 131 MAASDIFSAFGDKLLDSTSDALDNLVLQL---LMKASQ------DKKFVCEEADRALNTMVESIT-PLPLLQKLKTYVKH 200 (297)
Q Consensus 131 ~tl~dLf~~l~~~~md~~~~~ld~ll~~L---L~Ka~~------sn~FI~e~A~~AL~~Mv~~~s-~~kll~~L~~~~~h 200 (297)
.|+.++-.+... +.++++++.+ +.+.-. ...||+--+.+....| .+ ..+++.++.+|.++
T Consensus 1219 eTi~~ci~~iD~-------~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~em---tP~sgKll~al~~g~~d 1288 (1702)
T KOG0915|consen 1219 ETINKCINYIDI-------SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEM---TPYSGKLLRALFPGAKD 1288 (1702)
T ss_pred HHHHHHHHhhhH-------HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcccc---CcchhHHHHHHhhcccc
Confidence 233333322221 1244555444 333311 3578887777744444 23 25999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCH------------------HHHHHHHHHHHHHHHH
Q 022417 201 TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLP------------------EAREAARSMVNSMYNA 262 (297)
Q Consensus 201 Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~p------------------E~R~~aRk~l~~L~~~ 262 (297)
||..||+..|..+-.+++--.++... .-+...++.++.+.++ .-.+|+..++-..+=+
T Consensus 1289 RNesv~kafAsAmG~L~k~Ss~dq~q----KLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa 1364 (1702)
T KOG0915|consen 1289 RNESVRKAFASAMGYLAKFSSPDQMQ----KLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLA 1364 (1702)
T ss_pred ccHHHHHHHHHHHHHHHhcCChHHHH----HHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Confidence 99999999998888877765443321 1122222333333222 2223344333322222
Q ss_pred hccchhhhHHHHHHHHHhcCChhh
Q 022417 263 FTENEEHKQEAWQSFCQSNLQPID 286 (297)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~ 286 (297)
....+++.++-|..|-+...|...
T Consensus 1365 ~~ee~Ka~q~Lw~dvW~e~vsgga 1388 (1702)
T KOG0915|consen 1365 MHEEEKANQELWNDVWAELVSGGA 1388 (1702)
T ss_pred HhHHHHHHHHHHHHHHHHhCCCCc
Confidence 222234677889888888777653
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=91.84 E-value=13 Score=37.69 Aligned_cols=189 Identities=17% Similarity=0.188 Sum_probs=118.7
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhCh--hhhh--HHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHcCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHS--SLLE--PNLEKVMAVVVKAMKNP--RSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~--e~l~--~~L~~i~~~v~~~vknL--RS~Vsk~A~~tl~dLf~~l~~ 142 (297)
.+..++..|+++|=-.+..++..+..|+.++. +.+. +.+..++..+...-.|+ ++-+.=-.+...|.++..-..
T Consensus 203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~ 282 (503)
T PF10508_consen 203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQ 282 (503)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChH
Confidence 46677888999999999999999999998322 3332 45666777666666666 443333333444444443111
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHH-H--------HH---HhhccCCCHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLL-Q--------KL---KTYVKHTNPRIRAKAA 210 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll-~--------~L---~~~~~hKn~~VR~~aA 210 (297)
.+ .+....++..|+....+...-++..|=.|+..+..+.....+| . .| ....++-...+|.++-
T Consensus 283 -~v---~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l 358 (503)
T PF10508_consen 283 -EV---LELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRAL 358 (503)
T ss_pred -HH---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 11 1123444444454444567778888899999887666666655 1 12 2345566667899898
Q ss_pred HHHHHHHHhhCc---hhhh---h--c---cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 211 ISISICVTKMGL---EGMK---E--L---GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 211 ~~L~~~v~~~g~---~~l~---~--~---~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.++..++..-.. +.+. . | +-......+..+++-..||+|.+|-+++..|-.
T Consensus 359 ~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 359 HALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 889988764332 1121 1 1 112222267778888899999999999887643
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.44 E-value=6.8 Score=38.65 Aligned_cols=121 Identities=11% Similarity=0.138 Sum_probs=86.1
Q ss_pred CCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC
Q 022417 64 PDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK 143 (297)
Q Consensus 64 ~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~ 143 (297)
.+=...+++++.+++--+=..+-+||..++.+...||+.+..++-.++..+...+.+=-+.|-....+++-.+-...+..
T Consensus 54 ~~k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e 133 (393)
T KOG2149|consen 54 SKKGLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKE 133 (393)
T ss_pred ccccccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchh
Confidence 34455688999999999999999999999999999999999999999999988888876766666666665544344442
Q ss_pred CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 144 LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
.+.+ +-.++ ++.+..+..|=.|.||.-...+|+.+++..++
T Consensus 134 ~~sp----~~~l~----------------------------------~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 134 DQSP----MVSLL----------------------------------MPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred hhcc----hHHHH----------------------------------HHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 3332 22222 34445556666666666666666666666654
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.41 E-value=13 Score=37.93 Aligned_cols=191 Identities=15% Similarity=0.181 Sum_probs=111.9
Q ss_pred cHHHHHhcc-CCcCHHHHHHHHHHHHHHHhhC-hhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGL-DSKDWTNVCESLNNARRFALHH-SSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h-~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+..++.+| +..+=+..+++++.|-++..-- ...+.+-+-.+...+...-++=-+++.-+|+...|.|...-|+ ..+
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~-~~e 378 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGG-GWE 378 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCC-Cch
Confidence 345556666 4446677788888887776321 2234455666666777777788889999999999999998888 444
Q ss_pred cc-hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHH----------------------------------HHhcCchhHH
Q 022417 147 ST-SDALDNLVLQLLMKASQDKKFVCEEADRALNTM----------------------------------VESITPLPLL 191 (297)
Q Consensus 147 ~~-~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~M----------------------------------v~~~s~~kll 191 (297)
-+ .+.+-.-+..|+....+.|..+..+...++... ..++.+..++
T Consensus 379 ~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~ 458 (533)
T KOG2032|consen 379 EFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILM 458 (533)
T ss_pred hhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 32 111111223444444445544433333322211 1111222222
Q ss_pred HHHH---hhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 192 QKLK---TYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 192 ~~L~---~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
-.+. -+.+.--+.||..+.....+.+...-.......+...+......+..|..||++..|++++..+-
T Consensus 459 ~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 459 LLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred HHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 2221 12233334555555555555555444333333468999999999999999999999999987653
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.44 Score=29.45 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=24.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 233 LVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 233 ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
+++.+.++++|.+|+||..|=.++..+-+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 57788899999999999999988877654
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.34 E-value=18 Score=40.35 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=82.5
Q ss_pred cccHHHHHHHHHHHHHHHHhc-Cc-----------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHH
Q 022417 165 QDKKFVCEEADRALNTMVESI-TP-----------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVS 232 (297)
Q Consensus 165 ~sn~FI~e~A~~AL~~Mv~~~-s~-----------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ 232 (297)
..+-++|-+.-.++.-+|.+. +. ..++..|...+.+-|+-||.++-+.+..++++-.. --+-...
T Consensus 323 ~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~---p~~~~~e 399 (1251)
T KOG0414|consen 323 SESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI---PLGSRTE 399 (1251)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC---CccHHHH
Confidence 356667766666666555542 21 12566667788899999999999999998886331 1122678
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHH----HHHHHHHh
Q 022417 233 LVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQE----AWQSFCQS 280 (297)
Q Consensus 233 ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~----~~~~~~~~ 280 (297)
++..+...+.|++.=||.+|=+.+..+....+...++.-+ .||...|.
T Consensus 400 V~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~ 451 (1251)
T KOG0414|consen 400 VLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQK 451 (1251)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHh
Confidence 8999999999999999999999999998888887764333 36665553
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.17 E-value=28 Score=39.15 Aligned_cols=214 Identities=13% Similarity=0.161 Sum_probs=132.4
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc-
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST- 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~- 148 (297)
+..++..|+.. +.+.+||..|+.|+.+-.+ ...|..|++.++-...+.=..|--+|+.|+.++....++ +.+.
T Consensus 427 lts~IR~lk~~--~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~--~~~~d 500 (1431)
T KOG1240|consen 427 LTSCIRALKTI--QTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRD--IPPSD 500 (1431)
T ss_pred HHHHHHhhhcc--hhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC--CCccc
Confidence 44556666433 5789999999999987655 345788999999999999999999999999999977666 2332
Q ss_pred hhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHH-------------------HhcC------------chhHHHHH-
Q 022417 149 SDALDNLVLQLLMKASQ--DKKFVCEEADRALNTMV-------------------ESIT------------PLPLLQKL- 194 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~--sn~FI~e~A~~AL~~Mv-------------------~~~s------------~~kll~~L- 194 (297)
+.-|.+-+.+-|..... ++..+|-.-..+|..+. +... ...++..+
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~ 580 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVE 580 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHH
Confidence 22233333333333332 23333322222221111 1000 01222222
Q ss_pred ---HhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHH-----------------H
Q 022417 195 ---KTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAAR-----------------S 254 (297)
Q Consensus 195 ---~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aR-----------------k 254 (297)
.+-+..-.+.||++..+-+..+|.-+|.++ .-+.|+.-+..||||.++-.|.+-- -
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey 656 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY 656 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH
Confidence 234455557889888888777777777443 2467888889999999998887533 3
Q ss_pred HHHHHHHHhccchhh----hHHHHHHHHHhc-CChhhHHHHHHh
Q 022417 255 MVNSMYNAFTENEEH----KQEAWQSFCQSN-LQPIDAQSMVKI 293 (297)
Q Consensus 255 ~l~~L~~~~~~~~~~----~~~~~~~~~~~~-l~~~~a~~~~~~ 293 (297)
++-.|...+.+.||. ..++...+|+.. |.+.+...|++-
T Consensus 657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~ 700 (1431)
T KOG1240|consen 657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQD 700 (1431)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHh
Confidence 444567777777763 567888888754 345554444443
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=91.04 E-value=8.1 Score=36.23 Aligned_cols=127 Identities=15% Similarity=0.146 Sum_probs=94.6
Q ss_pred HHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhc--CchhHHHHHHhhccCCCHHHHHH
Q 022417 132 AASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESI--TPLPLLQKLKTYVKHTNPRIRAK 208 (297)
Q Consensus 132 tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~--s~~kll~~L~~~~~hKn~~VR~~ 208 (297)
-++.|.+.... .+++. -.+..++..|+..+.. ...-||+.|-++|...+-.- ....-++.+....+.-...||..
T Consensus 6 i~~~lL~~~~~-~~~~~-~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~ 83 (298)
T PF12719_consen 6 ITQSLLENVSS-SLSPN-ISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKIT 83 (298)
T ss_pred HHHHHHHhccc-cCCCc-chHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34555666554 55553 1356778888777765 55799999999997654432 34466777766666569999999
Q ss_pred HHHHHHHHHHhhCchhhhhc-------cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 209 AAISISICVTKMGLEGMKEL-------GLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 209 aA~~L~~~v~~~g~~~l~~~-------~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
+.+.+..++-..|.+.+... +...+++...+++.+.++|+|..+=..+..|.
T Consensus 84 al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 84 ALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999887655432 24789999999999999999999988888853
|
|
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=89.67 E-value=5.6 Score=33.56 Aligned_cols=95 Identities=14% Similarity=0.193 Sum_probs=67.3
Q ss_pred CchhHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHH-HHHhccC---CCHHHHHHHHHHHHHHH
Q 022417 186 TPLPLLQKLKTYVK-HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV-AAGLLND---RLPEAREAARSMVNSMY 260 (297)
Q Consensus 186 s~~kll~~L~~~~~-hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~-~a~~l~D---~~pE~R~~aRk~l~~L~ 260 (297)
.|..++.+|..-++ ++|+.|...+-.+|..|++.-|..-..+..-..+++. +.+.+.+ ...+|+.-...++....
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 35578888876665 6899999999999999999999654333334555554 6666653 34589999999999999
Q ss_pred HHhccchh--hhHHHHHHHHHh
Q 022417 261 NAFTENEE--HKQEAWQSFCQS 280 (297)
Q Consensus 261 ~~~~~~~~--~~~~~~~~~~~~ 280 (297)
..|..+.+ .-.+.|+.+-.+
T Consensus 115 ~~f~~~~~l~~i~~~y~~L~~~ 136 (141)
T cd03565 115 DAFRGSPDLTGVVEVYEELKKK 136 (141)
T ss_pred HHhCCCccchHHHHHHHHHHHc
Confidence 99976542 233666665443
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.44 E-value=13 Score=39.12 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=46.7
Q ss_pred cccHHHHHHHHHHHHHHHHhcCc----hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 165 QDKKFVCEEADRALNTMVESITP----LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 165 ~sn~FI~e~A~~AL~~Mv~~~s~----~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
...+-||---=.=++.-+.++++ .+++|++..|..+.|+.+|..|.+++..++.+++..
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 45555665555555666666663 479999999999999999999999999999998855
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=89.29 E-value=22 Score=34.55 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHhhChhhhhHHH----HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 82 WTNVCESLNNARRFALHHSSLLEPNL----EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 82 W~~~~eaL~~LRrLa~~h~e~l~~~L----~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
=.-.+|.|..+++|...+|+.+..+. +-++..+....+..|+. |+.+..++-..++. .. .+-..+.
T Consensus 148 ~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~----a~~l~~~~~~~l~~-~~-----~~s~~~~ 217 (372)
T PF12231_consen 148 KSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTK----AISLLLEAKKCLGP-NK-----ELSKSVL 217 (372)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH----HHHHHHHHHHHhCh-hH-----HHHHHHH
Confidence 35668999999999999999998664 45666666667777765 44444555556665 21 2444555
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc-cHHHHHHH
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL-GLVSLVQV 236 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~-~~~~ll~~ 236 (297)
..+.+...+++ +.+.-..-|..|+..-...+..+.++.+. +..+|...+... ..+..+..
T Consensus 218 ~~~~~~~~~~~-~~~~~~~~L~~mi~~~~~~~~a~~iW~~~------------------i~LL~~~~~~~w~~~n~wL~v 278 (372)
T PF12231_consen 218 EDLQRSLENGK-LIQLYCERLKEMIKSKDEYKLAMQIWSVV------------------ILLLGSSRLDSWEHLNEWLKV 278 (372)
T ss_pred HHhcccccccc-HHHHHHHHHHHHHhCcCCcchHHHHHHHH------------------HHHhCCchhhccHhHhHHHHH
Confidence 55555554443 44455555667766544445555554322 112243322221 26899999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 237 AAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 237 ~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
.-.|.+.++|.+|..|-.+...|-.....+
T Consensus 279 ~e~cFn~~d~~~k~~A~~aW~~liy~~~~~ 308 (372)
T PF12231_consen 279 PEKCFNSSDPQVKIQAFKAWRRLIYASNPN 308 (372)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998887755443
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.15 E-value=21 Score=37.31 Aligned_cols=172 Identities=11% Similarity=0.100 Sum_probs=106.1
Q ss_pred ccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcc---------------hHHHHHHHHHHHHHHHHc
Q 022417 76 GLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPR---------------SALCKTSIMAASDIFSAF 140 (297)
Q Consensus 76 ~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLR---------------S~Vsk~A~~tl~dLf~~l 140 (297)
.+..++-..|..+...|-.|+.+.|+...+.+..+...+.+-+..-= -.+--+-|--+..+.+..
T Consensus 508 ~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~ 587 (858)
T COG5215 508 ELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTR 587 (858)
T ss_pred HhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33567888999999999999999998776655444443332222111 122335566677777788
Q ss_pred CCCCCCcchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHH
Q 022417 141 GDKLLDSTSDALDNLVLQLLMKASQ--DKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAIS 212 (297)
Q Consensus 141 ~~~~md~~~~~ld~ll~~LL~Ka~~--sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~ 212 (297)
++ ++++. .+.+..|+.+..+ +..|+-++.-.|+.+|..+... .+.+|.|++.++...-.|-..+..+
T Consensus 588 ~~-~ie~v----~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avgl 662 (858)
T COG5215 588 RR-DIEDV----EDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGL 662 (858)
T ss_pred CC-CcccH----HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 88 66654 4444455555544 3578999999999999886542 4667777777765555666666666
Q ss_pred HHHHHHhhCchhhhhc---cHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 213 ISICVTKMGLEGMKEL---GLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 213 L~~~v~~~g~~~l~~~---~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+-.+...+|.+ +.-+ -+..+++.+. ++-+|..-|-++.+.
T Consensus 663 vgdlantl~~d-f~~y~d~~ms~LvQ~ls------s~~~~R~lKPaiLSv 705 (858)
T COG5215 663 VGDLANTLGTD-FNIYADVLMSSLVQCLS------SEATHRDLKPAILSV 705 (858)
T ss_pred HHHHHHHhhhh-HHHHHHHHHHHHHHHhc------ChhhccccchHHHHH
Confidence 66676666643 2222 1345555554 555555555554443
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=88.97 E-value=5.5 Score=39.00 Aligned_cols=129 Identities=15% Similarity=0.122 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHH-----hcCcchHHHHHHHHHHHHHHHHcCC-----CCCCc---ch
Q 022417 83 TNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKA-----MKNPRSALCKTSIMAASDIFSAFGD-----KLLDS---TS 149 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~-----vknLRS~Vsk~A~~tl~dLf~~l~~-----~~md~---~~ 149 (297)
..+..|.+.+|.|+.+..+.+.+.+...+..+... -.|.|+. -.|+..++.|...... ..... -.
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~K--D~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSK--DGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHH--HHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHH--HHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 67888999999999998888877777766666553 3344543 3466666666643211 00000 02
Q ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch---hHHHHHHhhccCCCHHHHHHHHHHH
Q 022417 150 DALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL---PLLQKLKTYVKHTNPRIRAKAAISI 213 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~---kll~~L~~~~~hKn~~VR~~aA~~L 213 (297)
+.+...+.+-|.-..+...+++.+|-+.+...-..++.. .+++.|..++++.+..|+.++|.++
T Consensus 304 ~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 234444445555334577899999999999888888765 4666667899999999999999764
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=88.42 E-value=12 Score=35.77 Aligned_cols=158 Identities=12% Similarity=0.123 Sum_probs=105.0
Q ss_pred ccHHHHHhcc-CCcCHHHHHHHHHHHHHHHh-hCh-hhhhHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHcCCC
Q 022417 68 SMIPCLIEGL-DSKDWTNVCESLNNARRFAL-HHS-SLLEPNLEKVMAVVVKAMK-NPRSALCKTSIMAASDIFSAFGDK 143 (297)
Q Consensus 68 ~~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~-~h~-e~l~~~L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~l~~~ 143 (297)
..+..++..- ..++|..-+..|..+-+... .++ --..+.=..|...+.++++ +|=|.|=+-|+.+-.-+|+.+|..
T Consensus 10 ~~v~k~L~~Fe~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~ 89 (307)
T PF04118_consen 10 AEVEKALKSFESSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPD 89 (307)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHH
Confidence 3455566555 36799999999999999888 333 3334555778889999999 899999999999999999999994
Q ss_pred CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 144 LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
.+-.+ +.--+ +.|.+-.++-+..||...-.++..-+-.+|.
T Consensus 90 ~L~~d---l~i~~-----------------------------------~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~- 130 (307)
T PF04118_consen 90 GLAQD---LPIYS-----------------------------------PGLFPLFSYASIQVKPQLLDIYEKYYLPLGP- 130 (307)
T ss_pred HHHhh---cHHHH-----------------------------------HHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-
Confidence 44332 22222 3333333444455665555545444445553
Q ss_pred hhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 224 GMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 224 ~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+ .-.+.-++-.+-.++.|.+.|.-+..-+++..++...+.
T Consensus 131 ~L-~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~ 171 (307)
T PF04118_consen 131 AL-RPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGD 171 (307)
T ss_pred HH-HHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcCh
Confidence 32 222566666666677777777777777777777766654
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=88.23 E-value=16 Score=32.09 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=79.2
Q ss_pred hccccHHHHHHHHHHHHHHHHh--cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh---ccHHHHHHHH
Q 022417 163 ASQDKKFVCEEADRALNTMVES--ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE---LGLVSLVQVA 237 (297)
Q Consensus 163 a~~sn~FI~e~A~~AL~~Mv~~--~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~---~~~~~ll~~~ 237 (297)
+.+++.=++-.|-..+..+++. ++|..++|.|..-.++.|+.+|..+-..+..+.++.+. -+.. .|+..-.+.-
T Consensus 17 ~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s-~v~~~~~~gi~~af~~~ 95 (187)
T PF12830_consen 17 CLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES-LVESRYSEGIRLAFDYQ 95 (187)
T ss_pred HhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHH
Confidence 4567788999999999999887 68999999999988999999999999999999988652 1111 1233333333
Q ss_pred HHhccCCCHH------------------HHHHHHHHHHHHHHHhccch-------hhhHHHHHHHHHhcC
Q 022417 238 AGLLNDRLPE------------------AREAARSMVNSMYNAFTENE-------EHKQEAWQSFCQSNL 282 (297)
Q Consensus 238 a~~l~D~~pE------------------~R~~aRk~l~~L~~~~~~~~-------~~~~~~~~~~~~~~l 282 (297)
...-.|...- .|.+-++.+..|-+.|..+. ....=.+-.||-.+|
T Consensus 96 ~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~nL 165 (187)
T PF12830_consen 96 RRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAENL 165 (187)
T ss_pred HHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHH
Confidence 3333333321 35666666666666665542 123345566666555
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.19 E-value=19 Score=38.51 Aligned_cols=136 Identities=18% Similarity=0.210 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHH
Q 022417 105 PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKA-SQDKKFVCEEADRALNTMVE 183 (297)
Q Consensus 105 ~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka-~~sn~FI~e~A~~AL~~Mv~ 183 (297)
+..++.-..|.+.+.+.-+-+=..++.+++--|..=|+ -..+..||+-+ +|.|.=|+.+|.-||..++-
T Consensus 515 grqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn----------nkair~lLh~aVsD~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 515 GRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN----------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred hhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc----------hhhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence 44455556677777788888888888888877766666 24678888875 56788999999999998743
Q ss_pred hcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 184 SITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 184 ~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
-.|..+...+.--..|-||-||.-+|..|-.+|..-| ....+..+-.++.|..-=||+.|--++.+.
T Consensus 585 -~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG--------~~eAi~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 585 -RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG--------LKEAINLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred -cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC--------cHHHHHHHhhhhcChHHHHHHHHHHHHHHH
Confidence 2455566666666789999999999998887777655 344455556666777777888777665543
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.03 E-value=14 Score=38.81 Aligned_cols=114 Identities=14% Similarity=0.196 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC
Q 022417 107 LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT 186 (297)
Q Consensus 107 L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s 186 (297)
+..|++.+...++|---.|.-+.+..+|.++..-.. -.. +.+-..++-.|+.-..+.|+=||..|+.++..+...+.
T Consensus 686 i~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pe-yi~--~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiG 762 (975)
T COG5181 686 ISGILPSLTPILRNKHQKVVANTIALVGTICMNSPE-YIG--VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIG 762 (975)
T ss_pred hhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcc-cCC--HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcC
Confidence 455566666666666667888888888888865222 222 23455677777777778999999999999999999999
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
|..++..|..+++..--+.|-+++.-+..+.+--|+-
T Consensus 763 PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf 799 (975)
T COG5181 763 PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF 799 (975)
T ss_pred HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch
Confidence 9999999999888777777888887777777766653
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=87.50 E-value=25 Score=32.94 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=89.4
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMK-NPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
..+..+...+.+.++. +|..+.+ .+.. ..++.+..+++.+. +....|-+.|..+++.+...-
T Consensus 74 ~av~~l~~~l~d~~~~--------vr~~a~~---aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----- 137 (335)
T COG1413 74 EAVPLLRELLSDEDPR--------VRDAAAD---ALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDER----- 137 (335)
T ss_pred HHHHHHHHHhcCCCHH--------HHHHHHH---HHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----
Confidence 4566666777777773 4444443 2221 23556666677777 688888888888777654221
Q ss_pred CcchhhHHHHHHHHHHHhcccc--------HHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALDNLVLQLLMKASQDK--------KFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn--------~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.++.++ ....+.. .+-......+.......+.....++.|..++.+....||..++..|..+.
T Consensus 138 -----a~~~l~----~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~ 208 (335)
T COG1413 138 -----ALDPLL----EALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLG 208 (335)
T ss_pred -----hhHHHH----HHhccchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhh
Confidence 122222 2222221 00000222222333333456677777777777777788887777666555
Q ss_pred Hhh--Cchhhh-------------------hccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 218 TKM--GLEGMK-------------------ELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 218 ~~~--g~~~l~-------------------~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
... ....+. ..+.+.-...+..++.+.++.+|..++....
T Consensus 209 ~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 209 SENVEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred cchhhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHHHHHHHhccchHHHHHHHHHhc
Confidence 442 100000 1134566666666777777777766665553
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.32 E-value=38 Score=34.79 Aligned_cols=184 Identities=15% Similarity=0.070 Sum_probs=119.1
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHh--hChhhhhHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHH---cCCC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFAL--HHSSLLEPNLEKVMAVVVKAMK-NPRSALCKTSIMAASDIFSA---FGDK 143 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~--~h~e~l~~~L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~---l~~~ 143 (297)
....+..+.|+|=+.++.+...+|+|.. .||.+-.-.-..+++.++..++ +---.+--+|-=++..+... --+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5567788889999999999999999984 3343322111244555555554 33345567888888888863 1221
Q ss_pred CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh-------HHHHHHhhcc-CCCHHHHHHHHHHHHH
Q 022417 144 LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP-------LLQKLKTYVK-HTNPRIRAKAAISISI 215 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k-------ll~~L~~~~~-hKn~~VR~~aA~~L~~ 215 (297)
..+. ..++.+.+=..+.+.-|+|.|-.||.-+....+.-| ++..|..... +..-...+.+.-.|.+
T Consensus 148 vv~a------gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsN 221 (514)
T KOG0166|consen 148 VVDA------GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSN 221 (514)
T ss_pred cccC------CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHH
Confidence 2222 223333333456788899999999998877665433 3444444333 3334677778888999
Q ss_pred HHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 216 CVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 216 ~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
++..-.+.--. ..+..+++++..++...++|+..-|--++..|-
T Consensus 222 lcrgk~P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 222 LCRGKNPSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HHcCCCCCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 99865322111 126899999999999999999977766665543
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.07 E-value=35 Score=37.12 Aligned_cols=182 Identities=14% Similarity=0.184 Sum_probs=116.5
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHh--hChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFAL--HHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~--~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.++.++..+-++.=-.+-.||.++|+++. .|...+.+ ..|+.....-++|=-|-|==+||..+.-|+..+.. .|
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~--ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-~i- 803 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG--EKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-DI- 803 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhH--HHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-hh-
Confidence 46788888888888889999999999998 66665544 77888889999999999999999988888877666 33
Q ss_pred cchhhHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 147 STSDALDNLVLQLLMKASQD-KKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~s-n~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
++.+...-..+.... ...+-. ...|+..+++.-.+ .+++....+|+.+.--.-|......+-.|+..
T Consensus 804 -----l~dL~e~Y~s~k~k~~~d~~lk-VGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 804 -----LPDLSEEYLSEKKKLQTDYRLK-VGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred -----HHHHHHHHHhcccCCCccceeh-HHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 333333222222111 111111 12333333333222 25666667888866666688887778888775
Q ss_pred hCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 220 ~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
..- .+-++-++.+...+.-.-.|+++-+|.+|=..+..+-.
T Consensus 878 ~a~-~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 878 LAF-QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred Hhh-hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 431 11111134444444444469999999998877776544
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=86.92 E-value=15 Score=41.42 Aligned_cols=198 Identities=16% Similarity=0.186 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHH
Q 022417 83 TNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK---NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQL 159 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vk---nLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~L 159 (297)
-++..|...|.-|+.+....+...+..+-..+.+.+. +..+ -....-+.|.++-. .|+.....+-..++.|
T Consensus 748 ~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d-----~~~~s~~vf~s~~~-~m~s~l~~~~~~l~~l 821 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND-----EFLSSFEVFNSLAP-LMHSFLHPLGSLLPRL 821 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc-----chhhhHHHHHHHHH-hhhhhhhhhhhhhhHH
Confidence 4567888889999987766555444443333333332 2221 22333344444444 3443311122333344
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHhcCch---hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHH
Q 022417 160 LMKASQDKKFVCEEADRALNTMVESITPL---PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV 236 (297)
Q Consensus 160 L~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~---kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~ 236 (297)
+.-.-..-..+|-.+.+|...|.+..+.. .++..+..-.+.-...+|+..+.++..++..++...+..+ ..-++.-
T Consensus 822 ~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~-~~Llv~p 900 (1549)
T KOG0392|consen 822 FFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPY-NPLLVVP 900 (1549)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccccc-ceeehhh
Confidence 33333456889999999999999887754 4555555666777778999999999999998876666555 4566777
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhccch----------h--hhHHHHHHHHHhcCChhhH
Q 022417 237 AAGLLNDRLPEAREAARSMVNSMYNAFTENE----------E--HKQEAWQSFCQSNLQPIDA 287 (297)
Q Consensus 237 ~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~----------~--~~~~~~~~~~~~~l~~~~a 287 (297)
+...+.|..-.+|+++-+++..+.-..+..+ | ++-+....|++.-|.|..+
T Consensus 901 llr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldpski 963 (1549)
T KOG0392|consen 901 LLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDPSKI 963 (1549)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCcccC
Confidence 7888899999999999999999988877654 1 2447788899888887654
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=86.76 E-value=8 Score=41.99 Aligned_cols=133 Identities=17% Similarity=0.228 Sum_probs=93.8
Q ss_pred hccCCcCHHHHHHHHHHHHHHHhhCh-hhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHH
Q 022417 75 EGLDSKDWTNVCESLNNARRFALHHS-SLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALD 153 (297)
Q Consensus 75 ~~L~s~dW~~~~eaL~~LRrLa~~h~-e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld 153 (297)
++....+=..+..-|..|-.+..+-| +++.+.++.+.+.+++.+.=+--.|--.+..|+..+-...+. .++- .++
T Consensus 874 ~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t-L~t~---~~~ 949 (1030)
T KOG1967|consen 874 SKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET-LQTE---HLS 949 (1030)
T ss_pred HHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc-cchH---HHh
Confidence 33333333444444555555555556 456789999999999988744433333455677777766666 5654 488
Q ss_pred HHHHHHHHHhcc-cc--HHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHH
Q 022417 154 NLVLQLLMKASQ-DK--KFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAI 211 (297)
Q Consensus 154 ~ll~~LL~Ka~~-sn--~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~ 211 (297)
.+++-||.=..+ +| ..+|+.|=.+|.++.+..++ ..++.+|...+.||--.||..++.
T Consensus 950 Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 950 TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 888888876666 33 79999999999999985543 368889999999999999987764
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.34 E-value=15 Score=39.21 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=68.7
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchh
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEE 268 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~ 268 (297)
.++..|..-..+-+|-+|.++-+.+..++..-. ..-+....+...+.+.++|++.-||..|=+++..|--.++...+
T Consensus 346 ~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s---k~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~ 422 (1128)
T COG5098 346 DLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS---KTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASE 422 (1128)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc---cccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhh
Confidence 446667778899999999999988888887522 11223688999999999999999999999999998777777776
Q ss_pred hhH----HHHHHHHH
Q 022417 269 HKQ----EAWQSFCQ 279 (297)
Q Consensus 269 ~~~----~~~~~~~~ 279 (297)
|+. .-|+..+.
T Consensus 423 h~~~l~~~~wek~L~ 437 (1128)
T COG5098 423 HGSQLRLTLWEKNLG 437 (1128)
T ss_pred ccchhhhHHHHhhcc
Confidence 532 67776543
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.27 E-value=23 Score=34.76 Aligned_cols=148 Identities=16% Similarity=0.217 Sum_probs=90.7
Q ss_pred HHHHHhccCC-cCH---HHHHHHHHHHHHHHhhC--hhhh--hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC
Q 022417 70 IPCLIEGLDS-KDW---TNVCESLNNARRFALHH--SSLL--EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG 141 (297)
Q Consensus 70 l~~~l~~L~s-~dW---~~~~eaL~~LRrLa~~h--~e~l--~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~ 141 (297)
|..+++.+++ ++- +..-+.|..||.|+-.. .+.+ .+-+..|+.......+|+ .|+.++|.++..|+- +
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p--~Vi~~~~a~i~~l~L--R 360 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDP--LVIQEVMAIISILCL--R 360 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCCh--HHHHHHHHHHHHHHh--c
Confidence 3344555543 332 23456788888888422 1222 244677777777777776 678888888777763 3
Q ss_pred CCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC
Q 022417 142 DKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG 221 (297)
Q Consensus 142 ~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g 221 (297)
. -|.. .. -|=.-.|+.++.+| -..-+...|++.++..+-+++-+-.
T Consensus 361 ~--pdhs----a~-------------~ie~G~a~~avqAm---------------kahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 361 S--PDHS----AK-------------AIEAGAADLAVQAM---------------KAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred C--cchH----HH-------------HHhcchHHHHHHHH---------------HhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 3 1211 11 11123455666666 1222445788888888888887643
Q ss_pred c--hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 222 L--EGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 222 ~--~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
. ..++.+|.++++.++.. .++.+|..++-++.-|
T Consensus 407 ~~~~~~l~~GiE~Li~~A~~----~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 407 ENRTILLANGIEKLIRTAKA----NHETCEAAAKAALRDL 442 (461)
T ss_pred hccchHHhccHHHHHHHHHh----cCccHHHHHHHHHHhc
Confidence 2 33678899999998874 4677899999887654
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=86.25 E-value=48 Score=39.10 Aligned_cols=196 Identities=17% Similarity=0.190 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHhhCh--hhhh-HHH-HHHHHHHHHHhcCcch-HHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 83 TNVCESLNNARRFALHHS--SLLE-PNL-EKVMAVVVKAMKNPRS-ALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~--e~l~-~~L-~~i~~~v~~~vknLRS-~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
...+-|+..||+|+...- +.+. -.+ ++++..+...|.+-.+ .|-.-.+.|+..|-...+. .+... ..++.
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~-nIkSG----WktIF 1226 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN-NVKSG----WKSMF 1226 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-hhhcC----cHHHH
Confidence 456788889999985321 1111 112 2444444444444333 6667778888888887776 45442 23344
Q ss_pred HHHHHh-ccccHHHHHHHHHHHHHHHHh----cC------chhHHHHHHhhccCC-CHHHHHHHHHHHHHHHHhhCchh-
Q 022417 158 QLLMKA-SQDKKFVCEEADRALNTMVES----IT------PLPLLQKLKTYVKHT-NPRIRAKAAISISICVTKMGLEG- 224 (297)
Q Consensus 158 ~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~----~s------~~kll~~L~~~~~hK-n~~VR~~aA~~L~~~v~~~g~~~- 224 (297)
.+|.-+ .+...=+.+-|=.++..++.. ++ -..++..|...++.+ +..+=-.+-.+|-.|...+-...
T Consensus 1227 ~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~ 1306 (1780)
T PLN03076 1227 MVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDL 1306 (1780)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccc
Confidence 444433 344455555555566555443 11 124555555544433 34444444445555533331000
Q ss_pred ----------------------------hhhc-----cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhH
Q 022417 225 ----------------------------MKEL-----GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQ 271 (297)
Q Consensus 225 ----------------------------l~~~-----~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~ 271 (297)
+... .-=-++..+.+.+.|..+|+|..|=..|......||..= +.
T Consensus 1307 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F--s~ 1384 (1780)
T PLN03076 1307 GSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF--SL 1384 (1780)
T ss_pred cccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC--CH
Confidence 0000 012466777778899999999998777666556665443 66
Q ss_pred HHHHHHHHhcCChh
Q 022417 272 EAWQSFCQSNLQPI 285 (297)
Q Consensus 272 ~~~~~~~~~~l~~~ 285 (297)
+.|+..|...|-|.
T Consensus 1385 ~~W~~if~~VLFPI 1398 (1780)
T PLN03076 1385 PLWERVFESVLFPI 1398 (1780)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999988776
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.23 E-value=7.9 Score=42.98 Aligned_cols=128 Identities=17% Similarity=0.228 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHH
Q 022417 81 DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK-NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQL 159 (297)
Q Consensus 81 dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~L 159 (297)
|=+-+..|--.|-|+.--..++...+++-++..+.+.=. -+|| |+..++|||.-.|.+ .+|++.
T Consensus 936 dp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRs----N~VvalgDlav~fpn-lie~~T---------- 1000 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRS----NLVVALGDLAVRFPN-LIEPWT---------- 1000 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeee----cchheccchhhhccc-ccchhh----------
Confidence 334444444445555444455555556655555543221 2444 788889999988888 888772
Q ss_pred HHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHH
Q 022417 160 LMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAG 239 (297)
Q Consensus 160 L~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~ 239 (297)
+.|.+-+.+-|+.||+.+...|..++-. +.+. +.=.+.-++.
T Consensus 1001 --------------------------------~~Ly~rL~D~~~~vRkta~lvlshLILn---dmiK---VKGql~eMA~ 1042 (1251)
T KOG0414|consen 1001 --------------------------------EHLYRRLRDESPSVRKTALLVLSHLILN---DMIK---VKGQLSEMAL 1042 (1251)
T ss_pred --------------------------------HHHHHHhcCccHHHHHHHHHHHHHHHHh---hhhH---hcccHHHHHH
Confidence 3334445677888998888888877753 1111 1223455889
Q ss_pred hccCCCHHHHHHHHHHHHHHHH
Q 022417 240 LLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 240 ~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
||.|.++++|..||..|..|.+
T Consensus 1043 cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 1043 CLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred HhcCCcHHHHHHHHHHHHHhhh
Confidence 9999999999999977766533
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.04 E-value=14 Score=38.62 Aligned_cols=173 Identities=13% Similarity=0.057 Sum_probs=108.4
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+..++.++.++|-..++..|..|+++...-.++=......+...+.+-+=+--+.|=++|..++..+=.- ..+.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~----~~ne 166 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM----ELNE 166 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc----cCCh
Confidence 457788999999999999999999999987554433333455556677777788899999999998765522 2232
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE 227 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~ 227 (297)
+ ..+..++..++ .|.--. +..++...++.. ..--.|.+..-+.+-|...|+++ -.+|+.++|.-+..+
T Consensus 167 e-n~~~n~l~~~v-----qnDPS~-EVRr~allni~v--dnsT~p~IlERarDv~~anRr~v---Y~r~Lp~iGd~~~ls 234 (885)
T COG5218 167 E-NRIVNLLKDIV-----QNDPSD-EVRRLALLNISV--DNSTYPCILERARDVSGANRRMV---YERCLPRIGDLKSLS 234 (885)
T ss_pred H-HHHHHHHHHHH-----hcCcHH-HHHHHHHHHeee--CCCcchhHHHHhhhhhHHHHHHH---HHHHhhhhcchhhcc
Confidence 2 11222222211 121122 222222222211 22234566666777788888865 467888998655443
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 228 LGLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 228 ~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
.++=+-.+-.+++|+.-.+|.++..++..
T Consensus 235 --i~kri~l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 235 --IDKRILLMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred --ccceehhhhhcchhhhhhHHHHHHHHHHH
Confidence 23323377788889888888888877654
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=85.93 E-value=8 Score=42.43 Aligned_cols=116 Identities=10% Similarity=0.131 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhcC-----chhHHHHHHhhcc
Q 022417 127 KTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ--DKKFVCEEADRALNTMVESIT-----PLPLLQKLKTYVK 199 (297)
Q Consensus 127 k~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~--sn~FI~e~A~~AL~~Mv~~~s-----~~kll~~L~~~~~ 199 (297)
-.++.|++.||-.-++ +-.=..++|-|-.+ +..-||...- .+|+.-|. ..+-+|.|...+.
T Consensus 949 a~~vvTlakmcLah~~---------LaKr~~P~lvkeLe~~~~~aiRnNiV---~am~D~C~~YTam~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 949 AVGVVTLAKMCLAHDR---------LAKRLMPMLVKELEYNTAHAIRNNIV---LAMGDICSSYTAMTDRYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHhhhhH---------HHHHHHHHHHHHHHhhhHHHHhccee---eeehhhHHHHHHHHHHhhHHHHHHhc
Confidence 3588999999976555 22222233333333 2222332222 23333333 2367899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 200 HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 200 hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+.++.||+.+-.+|.+++.. .+....=.-++..+. .+-|+++++|..|+-.+..+
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~----~~vKw~G~Lf~Rf~l-~l~D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQF----GIVKWNGELFIRFML-ALLDANEDIRNDAKFYISEV 1071 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhh----hhhhcchhhHHHHHH-HHcccCHHHHHHHHHHHHHH
Confidence 99999999999999999874 222322233444443 35688999999999877654
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=85.81 E-value=4.8 Score=35.34 Aligned_cols=71 Identities=13% Similarity=0.192 Sum_probs=57.3
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
+-++.++..+.+.+..||..+..++..++++ | +. +-...++.+..+..|.++.+|..|.+++..+++.|+.
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-G---Lv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQ-G---LV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-C---CC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 5567777888899999999888877666653 3 21 2467888999999999999999999999999887754
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.41 E-value=22 Score=39.95 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=102.0
Q ss_pred HHHHH-HHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHh
Q 022417 107 LEKVM-AVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALN-TMVES 184 (297)
Q Consensus 107 L~~i~-~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~-~Mv~~ 184 (297)
|+..+ ..+...+.+.-+-|-|+=++.+++||..||+..-+ |-+|.-|.. |+-+. +..|. +..++
T Consensus 575 L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksN------D~iLshLiT-------fLNDk-Dw~LR~aFfds 640 (1431)
T KOG1240|consen 575 LHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSN------DVILSHLIT-------FLNDK-DWRLRGAFFDS 640 (1431)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccc------cchHHHHHH-------HhcCc-cHHHHHHHHhh
Confidence 44433 45566677777888888899999999999994333 334444432 44333 44442 33344
Q ss_pred cC-----------chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHH
Q 022417 185 IT-----------PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAAR 253 (297)
Q Consensus 185 ~s-----------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aR 253 (297)
+. ..-++|.|+.++++.-..|-.++-.+|..+|+. +-+.+..+-.+++.+.-+|+-.+.=+|..+=
T Consensus 641 I~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~---~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 641 IVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL---GLLRKPAVKDILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred ccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh---cccchHHHHHHHHhhhhheeCchHHHHHHHH
Confidence 33 346899999999999999999999999999885 2233445788899999999999999998888
Q ss_pred HHHHHHHHHhccc
Q 022417 254 SMVNSMYNAFTEN 266 (297)
Q Consensus 254 k~l~~L~~~~~~~ 266 (297)
.++....+.++.-
T Consensus 718 ~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 718 GIIAAIARQLSAA 730 (1431)
T ss_pred HHHHHHHhhhhhh
Confidence 8887777766654
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=85.24 E-value=27 Score=34.75 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=36.1
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHH
Q 022417 156 VLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAI 211 (297)
Q Consensus 156 l~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~ 211 (297)
+..|+.-..+....++.++..+|.. +....+.+.|...+++.+|.||+.+..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~----i~~~~a~~~L~~~L~~~~p~vR~aal~ 139 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGW----LGGRQAEPWLEPLLAASEPPGRAIGLA 139 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhc----CCchHHHHHHHHHhcCCChHHHHHHHH
Confidence 3444444455667788888888864 467777888888888888888865543
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.96 E-value=59 Score=35.06 Aligned_cols=185 Identities=17% Similarity=0.217 Sum_probs=103.7
Q ss_pred ccceeccCCCCCCCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHH
Q 022417 50 AFIDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTS 129 (297)
Q Consensus 50 ~~v~y~~~~eL~Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A 129 (297)
+.+.|+.+.+..|...- .+-+.|.+.|=+.+++|++.+-.+.... |-+.+.+..|++.+.. .|+.--|-
T Consensus 7 ~~~~~~~~p~~e~~~~~-----~ik~~Lek~~~~~KIeamK~ii~~mlnG-e~~p~Llm~IiRfvlp----s~~~elKK- 75 (948)
T KOG1058|consen 7 VCYTLLNSPDGEPMSED-----EIKEKLEKGDDEVKIEAMKKIIALMLNG-EDLPSLLMTIIRFVLP----SRNHELKK- 75 (948)
T ss_pred ceeeeecCCcccccchH-----HHHHHHhcCChHHHHHHHHHHHHHHHcC-CCchHHHHHHhheeec----cCchHHHH-
Confidence 45677777777776655 6667788899999999999888887633 3333344444444432 23321111
Q ss_pred HHHHHHHHHHcCCCCCCcchhhHHHHHH--HHHHHhcc-ccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhccCCCH
Q 022417 130 IMAASDIFSAFGDKLLDSTSDALDNLVL--QLLMKASQ-DKKFVCEEADRALNTMVESITP---LPLLQKLKTYVKHTNP 203 (297)
Q Consensus 130 ~~tl~dLf~~l~~~~md~~~~~ld~ll~--~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~hKn~ 203 (297)
.+-..++.+.+ .+.....+.+++. .-+.|=.+ -|.|||-.. |..+++-=-+ ..++|.+..++.|+++
T Consensus 76 --Lly~ywE~vPK--t~~dgkl~~EMILvcna~RkDLQHPNEyiRG~T---LRFLckLkE~ELlepl~p~IracleHrhs 148 (948)
T KOG1058|consen 76 --LLYYYWELVPK--TDSDGKLLHEMILVCNAYRKDLQHPNEYIRGST---LRFLCKLKEPELLEPLMPSIRACLEHRHS 148 (948)
T ss_pred --HHHHHHHHccc--cCCCcccHHHHHHHHHHHhhhccCchHhhcchh---hhhhhhcCcHHHhhhhHHHHHHHHhCcch
Confidence 11112233333 2222223444442 22333333 688888654 4444433222 3678888899999999
Q ss_pred HHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 204 RIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 204 ~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
-||+.+-.++..+.+... .+.. +...++.- -++.|.+|-+...|--++.
T Consensus 149 YVRrNAilaifsIyk~~~--~L~p-DapeLi~~--fL~~e~DpsCkRNAFi~L~ 197 (948)
T KOG1058|consen 149 YVRRNAILAIFSIYKNFE--HLIP-DAPELIES--FLLTEQDPSCKRNAFLMLF 197 (948)
T ss_pred hhhhhhheeehhHHhhhh--hhcC-ChHHHHHH--HHHhccCchhHHHHHHHHH
Confidence 999999888877777621 1111 12222221 1346777776655544443
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.84 E-value=17 Score=38.95 Aligned_cols=31 Identities=26% Similarity=0.282 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 230 LVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 230 ~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
...+.-.+.+|++|++-|+|+.|+-.+..+.
T Consensus 501 ~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 501 LPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 5788888999999999999999999988887
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=84.82 E-value=24 Score=35.09 Aligned_cols=118 Identities=17% Similarity=0.011 Sum_probs=74.0
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh
Q 022417 110 VMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP 189 (297)
Q Consensus 110 i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k 189 (297)
.+..++..+.+....|..++..++|.+ +. + .....|+.-..+...|++..+-.++..... -
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----~~----~------~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~---- 147 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----GG----R------QAEPWLEPLLAASEPPGRAIGLAALGAHRH-D---- 147 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----Cc----h------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-C----
Confidence 366777778888777877777766632 22 1 222333333356778999877766665321 1
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 190 LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 190 ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
..+.|...++|.++.||+.++..|-.+-. ...+..+...+.|.++++|..|=..+..
T Consensus 148 ~~~~L~~~L~d~d~~Vra~A~raLG~l~~------------~~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 148 PGPALEAALTHEDALVRAAALRALGELPR------------RLSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhhcc------------ccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 24455556679999999998876644321 1122224455899999999888776643
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=84.30 E-value=5.7 Score=43.05 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=87.2
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcc--hHHHH-HHHHHHHHHHHHcCCCCCC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPR--SALCK-TSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLR--S~Vsk-~A~~tl~dLf~~l~~~~md 146 (297)
+.-+++.|+=.|=..++..++++.-+..-|+.++..++..+++.+...=++.. +.|.| .|++|+.-|-+.+....+-
T Consensus 911 lPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~ 990 (1030)
T KOG1967|consen 911 LPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLL 990 (1030)
T ss_pred HHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccc
Confidence 45677888889999999999999999999999999999999998877777666 36666 5899999999877776666
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALN 179 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~ 179 (297)
++ -|..+..|.+-..|.|+.||++|-++=.
T Consensus 991 ~f---r~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 991 SF---RPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred cc---cHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 65 5667777666556789999999988754
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=84.08 E-value=45 Score=32.77 Aligned_cols=126 Identities=12% Similarity=0.152 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc----------hhhHHHHHHHHHHHhccccHHHHHHHHHH
Q 022417 108 EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST----------SDALDNLVLQLLMKASQDKKFVCEEADRA 177 (297)
Q Consensus 108 ~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~----------~~~ld~ll~~LL~Ka~~sn~FI~e~A~~A 177 (297)
.+++..+...+.+ ..+...|..+++-|+.-... .+... -..|..+++.|+.+..+.+.-++...-.|
T Consensus 270 ~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~-~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~A 346 (415)
T PF12460_consen 270 TELLDKLLELLSS--PELGQQAAKAFGILLSDSDD-VLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTA 346 (415)
T ss_pred HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHH-hcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHH
Confidence 3444455555665 55666666666665543222 21111 23478889999988877666688888999
Q ss_pred HHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHH
Q 022417 178 LNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAA 238 (297)
Q Consensus 178 L~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a 238 (297)
|..++++++. ..++|.|..+++..++.++..+-..|..+++.- +.+...+++.+++.+-
T Consensus 347 Ls~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~~~i~~hl~sLI~~LL 412 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA--PELISEHLSSLIPRLL 412 (415)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHH
Confidence 9999999985 468888889999999999999999998888865 2333334566655544
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.84 E-value=5.4 Score=40.72 Aligned_cols=192 Identities=15% Similarity=0.157 Sum_probs=121.2
Q ss_pred CCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHc
Q 022417 62 AIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAF 140 (297)
Q Consensus 62 Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l 140 (297)
|+......|..++..|.+.|=+...+|+-.|+-|+.+.+|.+.-.+ -.+++.|+..+...--.|.--|+.++|.+..
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt-- 308 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT-- 308 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee--
Confidence 3445566788888888999999999999999999987777665332 3466677777776666666788888888654
Q ss_pred CCCCCCcc--hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-------chhHHHHHHhhccCCCHHHHHHHHH
Q 022417 141 GDKLLDST--SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-------PLPLLQKLKTYVKHTNPRIRAKAAI 211 (297)
Q Consensus 141 ~~~~md~~--~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-------~~kll~~L~~~~~hKn~~VR~~aA~ 211 (297)
|++..... ....-.++..||.+ ..+..|+.+|-.++.-|+.... -+-++|.|...+++---.+|..+|-
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~--s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAaw 386 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSS--SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAW 386 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhcc--CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHH
Confidence 33111111 00122334444332 3566799999999988765332 2347788887777666789999999
Q ss_pred HHHHHHHhhCchhh---hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 212 SISICVTKMGLEGM---KELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 212 ~L~~~v~~~g~~~l---~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.+.++...=..+.+ .+.| +++....++.-.+..+ .+.++..|...+
T Consensus 387 aIsN~ts~g~~~qi~yLv~~g---iI~plcdlL~~~D~~i---i~v~Ld~l~nil 435 (514)
T KOG0166|consen 387 AISNLTSSGTPEQIKYLVEQG---IIKPLCDLLTCPDVKI---ILVALDGLENIL 435 (514)
T ss_pred HHHhhcccCCHHHHHHHHHcC---CchhhhhcccCCChHH---HHHHHHHHHHHH
Confidence 99988775333332 1223 5555566664444443 444444444333
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.61 E-value=52 Score=37.41 Aligned_cols=118 Identities=16% Similarity=0.185 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc------CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI------TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~------s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
.+-.++++|-.+...++.+.|-.|...++-|...- +...+....+....+++..||-.+.++...|+-......
T Consensus 256 ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 256 LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 46778888888888999999999999999887642 145677777788889999999999998888876542110
Q ss_pred --------hh----------------------hcc---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-Hhccchh
Q 022417 225 --------MK----------------------ELG---LVSLVQVAAGLLNDRLPEAREAARSMVNSMYN-AFTENEE 268 (297)
Q Consensus 225 --------l~----------------------~~~---~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~-~~~~~~~ 268 (297)
+. .+. ...++..++.-+-|.-+.||..|-.-+..+|+ +|....+
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~ 413 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSA 413 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00 000 12299999999999999999999999888888 4644433
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=82.72 E-value=48 Score=32.07 Aligned_cols=140 Identities=11% Similarity=0.151 Sum_probs=97.1
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhh----hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLL----EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l----~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
+..+++.+...+.+-..+|..+++.|...|+.+. ..+...+.....+.+.+-.=...|.++..+|||...-.+
T Consensus 166 f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n--- 242 (335)
T PF08569_consen 166 FWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSN--- 242 (335)
T ss_dssp GGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGG---
T ss_pred HHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhH---
Confidence 4456677788889999999999999998888654 467788888888999988888889999999998743111
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC-chh
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG-LEG 224 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g-~~~ 224 (297)
...|..+++...-|..+-..+++++..||-.+--.+---|..=. ++.
T Consensus 243 --------------------------------~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~ 290 (335)
T PF08569_consen 243 --------------------------------FNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPP 290 (335)
T ss_dssp --------------------------------HHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHH
T ss_pred --------------------------------HHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChH
Confidence 13466667766667777777778888887766544444443311 111
Q ss_pred ---hhhccHHHHHHHHHHhccCC
Q 022417 225 ---MKELGLVSLVQVAAGLLNDR 244 (297)
Q Consensus 225 ---l~~~~~~~ll~~~a~~l~D~ 244 (297)
++..+.++++.-+.+|..|.
T Consensus 291 I~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 291 IVDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC
Confidence 33456888888888888887
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.26 E-value=78 Score=34.15 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=108.8
Q ss_pred HhccCCcCHHHHHHHHHHHHHHHhhChhhhh--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhh
Q 022417 74 IEGLDSKDWTNVCESLNNARRFALHHSSLLE--PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDA 151 (297)
Q Consensus 74 l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~--~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ 151 (297)
+..+++++=..+......+ .....-.++.+ ..-...++.+.....+.--.|-.+.+.-+-.+...+|...+
T Consensus 443 ~~~l~de~~~V~lnli~~l-s~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~------ 515 (759)
T KOG0211|consen 443 IGNLKDEDPIVRLNLIDKL-SLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF------ 515 (759)
T ss_pred hhhcchhhHHHHHhhHHHH-HHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh------
Confidence 3444554444443333333 33333333332 12233344444444443222333334445555555554233
Q ss_pred HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhcC----chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 152 LDNLVLQLLMKASQD-KKFVCEEADRALNTMVESIT----PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 152 ld~ll~~LL~Ka~~s-n~FI~e~A~~AL~~Mv~~~s----~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
++.+..|+..-..+ =.=|++.|.+.|-..+..-. ....++.++....+.|-.+|..++..+..+.+-+|.+..
T Consensus 516 -~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~- 593 (759)
T KOG0211|consen 516 -DEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT- 593 (759)
T ss_pred -hHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH-
Confidence 33344443322222 24588888888888887755 346888888777777999999999999999998886543
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.+.+++.+-.+..|..|++|..+=+.+..+....
T Consensus 594 ---~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 594 ---CEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred ---HHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 6889999999999999999999988877754443
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=81.86 E-value=36 Score=30.06 Aligned_cols=159 Identities=15% Similarity=0.162 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHhh-ChhhhhHHHHHHHHH------------HHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchh
Q 022417 84 NVCESLNNARRFALH-HSSLLEPNLEKVMAV------------VVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSD 150 (297)
Q Consensus 84 ~~~eaL~~LRrLa~~-h~e~l~~~L~~i~~~------------v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~ 150 (297)
-|..||..|..++++ .+..+.+..+.+++. +.-.++|+-..|=-.|+.+++.|+...+. -+-
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~-~L~---- 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKP-FLA---- 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHH-HHH----
Confidence 367899999999987 666665555444432 24446677777888888888888876332 111
Q ss_pred hHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHhcCchhHHHHHHh-hccCCCHHHHHHHHHHHHHHHHhhCchhh
Q 022417 151 ALDNLVLQLLMKAS----QDKKFVCEEADRALNTMVESITPLPLLQKLKT-YVKHTNPRIRAKAAISISICVTKMGLEGM 225 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~----~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~-~~~hKn~~VR~~aA~~L~~~v~~~g~~~l 225 (297)
-+. ....|..=.. .|..|+..+ =..|.. -...+++.+-....+++..++..-.=+++
T Consensus 77 -----------~Ae~~~~~~~sFtslS~--tLa~~i~~l-----H~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL 138 (182)
T PF13251_consen 77 -----------QAEESKGPSGSFTSLSS--TLASMIMEL-----HRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL 138 (182)
T ss_pred -----------HHHhcCCCCCCcccHHH--HHHHHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc
Confidence 111 1224443322 233332211 122322 23567788888888888888876554555
Q ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 226 KELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 226 ~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
...-+..++..+..++...++++|.++--++..|.++.+.
T Consensus 139 ~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~~ 178 (182)
T PF13251_consen 139 PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQPP 178 (182)
T ss_pred CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCCC
Confidence 4333789999999999999999999999998888776543
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=81.82 E-value=10 Score=30.22 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=49.9
Q ss_pred hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHh-----c-cCCCHHHHHHHHHHHHHH
Q 022417 188 LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGL-----L-NDRLPEAREAARSMVNSM 259 (297)
Q Consensus 188 ~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~-----l-~D~~pE~R~~aRk~l~~L 259 (297)
..++..|..-+.|+|+.+..++-.+|..|++.-|..-........++.-+.++ . .|.+..+|+.++.++...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 45777887788899999999999999999999885543333222222222221 1 345889999999887643
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.64 E-value=8.7 Score=37.98 Aligned_cols=176 Identities=17% Similarity=0.115 Sum_probs=113.1
Q ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHcCCC-CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh--
Q 022417 113 VVVKAMKNPRSALCKTSIMAASDIFSAFGDK-LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP-- 189 (297)
Q Consensus 113 ~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~-~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k-- 189 (297)
.++.+|...--.|-++|.-|+..|...=.++ .+-. ...+..+.. |.| ...--++-.+..+|..|...--..+
T Consensus 130 ~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~-sGaL~pltr--Lak--skdirvqrnatgaLlnmThs~EnRr~L 204 (550)
T KOG4224|consen 130 LLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIAR-SGALEPLTR--LAK--SKDIRVQRNATGALLNMTHSRENRRVL 204 (550)
T ss_pred HHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhh-ccchhhhHh--hcc--cchhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 3455666666778888888888887541110 1111 122333332 222 2334577788888888865533333
Q ss_pred ----HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 190 ----LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 190 ----ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
-+|.|.+.+++.++.||.++...+.++--.-...+++...-.++++.+..+..|+++.+...|--++..|-+--.-
T Consensus 205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 3567788899999999998887777654322223333333478999999999999999999998887765432221
Q ss_pred chh----hhHHHHHHHHHhcCChhhHHHHHHh
Q 022417 266 NEE----HKQEAWQSFCQSNLQPIDAQSMVKI 293 (297)
Q Consensus 266 ~~~----~~~~~~~~~~~~~l~~~~a~~~~~~ 293 (297)
+-| .+.-.+..++|+...|.-+.+|.=|
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCI 316 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACI 316 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHH
Confidence 111 2456788888998888888877655
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.41 E-value=75 Score=34.17 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHH-HcCCCCCCcchhhHHHHHHHHHHHhcccc-HHHHHHHHHHH-------
Q 022417 108 EKVMAVVVKAMKNPRSALCKTSIMAASDIFS-AFGDKLLDSTSDALDNLVLQLLMKASQDK-KFVCEEADRAL------- 178 (297)
Q Consensus 108 ~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~-~l~~~~md~~~~~ld~ll~~LL~Ka~~sn-~FI~e~A~~AL------- 178 (297)
...+..+...++++---.+|.-|+-.|++|- .-+...+|-..+-=+.++......+.-.. .-++....+.|
T Consensus 82 ~~~~k~il~~~k~q~~~l~ks~~~~~geI~frAWkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqk 161 (1005)
T KOG1949|consen 82 INFIKMILGTIKNQLQGLQKSLMVYIGEIYFRAWKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQK 161 (1005)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHhHHHHHHHHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 4455556666777777778888999999874 44444444321112345555555443211 12333333333
Q ss_pred ------HHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh---hccHHHHHHHHHHhccCCCHHHH
Q 022417 179 ------NTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK---ELGLVSLVQVAAGLLNDRLPEAR 249 (297)
Q Consensus 179 ------~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~---~~~~~~ll~~~a~~l~D~~pE~R 249 (297)
+.|+. .-.=|.|.++++-+|..||..+|.++.+...-.|++.-. +.-+++-..-+.+++.|--|.+|
T Consensus 162 k~~qgVeeml~----rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VR 237 (1005)
T KOG1949|consen 162 KVRQGVEEMLY----RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVR 237 (1005)
T ss_pred HHhhhHHHHHH----HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 33322 112355678999999999999999999999988866422 22367778889999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 022417 250 EAARSMVNSMYNAF 263 (297)
Q Consensus 250 ~~aRk~l~~L~~~~ 263 (297)
..|-.-+......|
T Consensus 238 S~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 238 STAILGVCKITSKF 251 (1005)
T ss_pred HHHHHHHHHHHHHH
Confidence 99987776655544
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=80.69 E-value=48 Score=30.90 Aligned_cols=142 Identities=11% Similarity=0.212 Sum_probs=96.5
Q ss_pred hhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCC---CCcc--hhhHHHHHHHHHHH----h-ccccHHH
Q 022417 101 SLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKL---LDST--SDALDNLVLQLLMK----A-SQDKKFV 170 (297)
Q Consensus 101 e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~---md~~--~~~ld~ll~~LL~K----a-~~sn~FI 170 (297)
..+...++-+++.++..++|....+-..||.++..+........ +... .+-+.+.+.++|.- + .+..--+
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 45667899999999999999999999999999999998776644 2222 11233333333321 0 1355667
Q ss_pred HHHHHHHHHHHHHhc------C----chhHHHH-HHhhcc----CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHH
Q 022417 171 CEEADRALNTMVESI------T----PLPLLQK-LKTYVK----HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQ 235 (297)
Q Consensus 171 ~e~A~~AL~~Mv~~~------s----~~kll~~-L~~~~~----hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~ 235 (297)
-..|=.||..++.-. . ..+++.. +..+.. ..++.++....+.+..++..+|...+.. +.+++.
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~h--L~rii~ 268 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKH--LQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHH--HHHHHH
Confidence 778888888775531 1 1234433 444333 2368999999999999999999765544 678888
Q ss_pred HHHHhccCC
Q 022417 236 VAAGLLNDR 244 (297)
Q Consensus 236 ~~a~~l~D~ 244 (297)
.+...+.+-
T Consensus 269 ~l~~~l~np 277 (282)
T PF10521_consen 269 VLSQILENP 277 (282)
T ss_pred HHHHHhcCC
Confidence 887776654
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=80.10 E-value=8.5 Score=31.93 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=52.6
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh--ccHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHH
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE--LGLVSLVQVAAGLLN--------DRLPEAREAARSMVNS 258 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~--~~~~~ll~~~a~~l~--------D~~pE~R~~aRk~l~~ 258 (297)
.++..|..-++++++-|+.++.++|..|+..- .+.+.. .....+++.+..|-. |-+..||..|+.++..
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G-~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~ 116 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG-NSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKA 116 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC-CHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHH
Confidence 56788888889999999999999999999873 333322 112456666666665 3355899999999887
Q ss_pred HHH
Q 022417 259 MYN 261 (297)
Q Consensus 259 L~~ 261 (297)
+++
T Consensus 117 if~ 119 (122)
T cd03572 117 IFS 119 (122)
T ss_pred Hhc
Confidence 765
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 90.8 bits (225), Expect = 8e-22
Identities = 39/238 (16%), Positives = 81/238 (34%), Gaps = 13/238 (5%)
Query: 56 PSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVV 115
+ L + M + L+ K WT ESL + H L +++ +
Sbjct: 3 HMDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALK 62
Query: 116 KAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEAD 175
K + + + A + L S+ V LL K + K V
Sbjct: 63 KVITKDSNVVLVA---MAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALR 119
Query: 176 RALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQ 235
A++ + S + + + + + NP ++++ A+ I+ +T+ + + L L
Sbjct: 120 EAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTT 179
Query: 236 VAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKI 293
LN+ P R+++ + ++ + L +D M KI
Sbjct: 180 SLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA----------VTPLLADVDPLKMAKI 227
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 5e-13
Identities = 40/237 (16%), Positives = 82/237 (34%), Gaps = 9/237 (3%)
Query: 29 QKQPDLSVNDENKASFPPSADAFIDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCES 88
Q+ + K +F D I + + L+ L KD+ +
Sbjct: 13 QRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAK------VSLMSQLFHKDFKQHLAA 66
Query: 89 LNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148
L++ R A L N + ++ A + I D +
Sbjct: 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126
Query: 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAK 208
+ + V LL+K + K + +N + + + PL + L +K N R R++
Sbjct: 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSE 186
Query: 209 AAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265
+ I +T G+ L +S+ + A + D+ R AA +++ + + +
Sbjct: 187 CLLVIEYYITN---AGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-07
Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 25/232 (10%)
Query: 75 EGLDSKDWTNVCESLNNARRFALHHSSLLEP---NLEKVMAVVVKAMKN-PRSALCKTSI 130
E + S W + E+L L + L+ N ++ + ++ +
Sbjct: 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82
Query: 131 MAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP- 189
+ I + D + + LL + + K V E +AL T+ + PL
Sbjct: 83 QSVELICDKLKTP--GFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS 140
Query: 190 ------LLQKLKTYVKHTNPRIRAKAAISISICV--TKMGLEGMKELGLVSLVQVAAGLL 241
+L+ + ++KH P+IR + + + K G ++ +V + ++
Sbjct: 141 SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV 200
Query: 242 NDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKI 293
ND P R + F N L+ +D KI
Sbjct: 201 NDTQPAIRTIGFESFAILIKIFGMNT----------FVKTLEHLDNLKRKKI 242
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 2e-07
Identities = 57/331 (17%), Positives = 105/331 (31%), Gaps = 104/331 (31%)
Query: 12 ITTPERPKKQVKFAAPVQKQPDLSVNDENKASFPP--SADAFIDYI-------PSENLKA 62
+TT R KQV +S++ + + P + Y+ P E L
Sbjct: 270 LTT--R-FKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 63 IPDPESMIPCLI-EGLDSKD-WTNV-CESLNNARRFALHHSSLLEPNLEKVM----AVVV 115
P S+I I +GL + D W +V C+ L +L+ LEP + M +V
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFP 382
Query: 116 KAMKNPRSALC-------KTSIMAASDIFSAFGDKLL-----DSTSDALDNLVLQLLMKA 163
+ P L K+ +M + + L ++ ++ ++ L+L +K
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVM---VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 164 SQD----KKFV---------------------------------CEEADRA-------LN 179
+ + V E +R L+
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 180 -------------TMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226
S + L LQ+LK Y + + +I L ++
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---LDFLPKIE 556
Query: 227 ELGLVS----LVQVAAGLLNDRLPEAREAAR 253
E + S L+++A L+ + EA +
Sbjct: 557 ENLICSKYTDLLRIA--LMAEDEAIFEEAHK 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-05
Identities = 35/230 (15%), Positives = 75/230 (32%), Gaps = 18/230 (7%)
Query: 48 ADAFIDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPN- 106
AD F + + + ++P + + + + + F + S+ N
Sbjct: 263 ADKFTELQ--KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV 320
Query: 107 -LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ 165
+ +++ + + + + + + G D+T + L L L L
Sbjct: 321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECP 377
Query: 166 DKKFVCEEADRALNTMVESITP----LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG 221
+ V L+ + E I LL + + R+R + + ++G
Sbjct: 378 E---VRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG 434
Query: 222 LEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQ 271
+E E L + L D + REAA S + + F + H
Sbjct: 435 VEFFDEK----LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHAT 480
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 297 | |||
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.86 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.83 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 99.67 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 99.56 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.53 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.97 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.8 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.66 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.65 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.64 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.63 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.63 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.59 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.57 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.56 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.52 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.51 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.5 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.49 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.48 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.47 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.43 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.43 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.36 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 98.36 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 98.36 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.36 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.34 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 98.31 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.31 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.28 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 98.22 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.22 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.09 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.01 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.0 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.88 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.88 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.66 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.58 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 97.57 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 97.55 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 97.55 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.48 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 97.48 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.45 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 97.33 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 97.29 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.05 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 97.05 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 96.96 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 96.89 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 96.84 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 96.59 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 96.56 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 96.52 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 96.29 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 96.29 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 96.25 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 96.21 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 96.18 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 96.11 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.11 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 96.07 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 95.94 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 95.9 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 95.86 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 95.75 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 95.61 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 95.35 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 95.1 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 95.06 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 95.06 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 94.94 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 94.79 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 94.62 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 94.47 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 94.46 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.35 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 94.33 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 94.15 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 94.03 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 93.83 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 93.75 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 93.68 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 93.53 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 93.25 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 92.54 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 92.42 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 92.18 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 91.79 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 91.14 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 90.36 | |
| 1elk_A | 157 | Target of MYB1; superhelix of helices, endocytosis | 89.91 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 89.7 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 89.42 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 89.38 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.3 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 88.06 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 86.81 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 86.33 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 85.42 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 84.94 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 83.41 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 81.51 |
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=168.29 Aligned_cols=205 Identities=16% Similarity=0.216 Sum_probs=182.6
Q ss_pred ceeccCCCCCCCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHh-cCcchHHHHHHH
Q 022417 52 IDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAM-KNPRSALCKTSI 130 (297)
Q Consensus 52 v~y~~~~eL~Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~v-knLRS~Vsk~A~ 130 (297)
+++++++|+.+.=.| .+++.+.|.||..|.+|+..|..++..++++....+.+++..+.+.+ ++....|...|+
T Consensus 4 ~d~~~~~di~~~l~~-----~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~ 78 (242)
T 2qk2_A 4 MDLLDPVDILSKMPK-----DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAG 78 (242)
T ss_dssp HHTTSCBCCGGGSCT-----THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHhCCcccccccCCH-----HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 556667776332223 57888899999999999999999999888876677889999999999 599999999999
Q ss_pred HHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHH
Q 022417 131 MAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAA 210 (297)
Q Consensus 131 ~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA 210 (297)
.+++.|+..+|. .+.+. +..+++.|+.+.++.+..||+.|..||..++.+++...+++.|..+++|+|+.||..+.
T Consensus 79 ~~l~~la~~l~~-~~~~~---~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l 154 (242)
T 2qk2_A 79 KCLALLAKGLAK-RFSNY---ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETA 154 (242)
T ss_dssp HHHHHHHHHHGG-GGHHH---HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHhh-hHHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHH
Confidence 999999999999 77764 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 211 ISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 211 ~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+|..++...+++......+..+++.+..+++|.++++|..|..++..+..+++.
T Consensus 155 ~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 155 LFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 9999999998765433344789999999999999999999999999999999974
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-19 Score=160.74 Aligned_cols=207 Identities=16% Similarity=0.235 Sum_probs=183.7
Q ss_pred cccceeccCCCCCC-CCCccccHHHHHhccCCcCHHHHHHHHHHHHH-HHhhChhhh--hHHHHHHHHHHHHHh-cCcch
Q 022417 49 DAFIDYIPSENLKA-IPDPESMIPCLIEGLDSKDWTNVCESLNNARR-FALHHSSLL--EPNLEKVMAVVVKAM-KNPRS 123 (297)
Q Consensus 49 ~~~v~y~~~~eL~P-l~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRr-La~~h~e~l--~~~L~~i~~~v~~~v-knLRS 123 (297)
+..++++++.|+-+ |+. .+.+.+.|.+|..|.+|+..|.. ++.-+|++. ...+.+++..+.+.+ ++...
T Consensus 2 ~~~~d~~~~~~i~~kl~~------~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~ 75 (249)
T 2qk1_A 2 SHMASMLPEETILDKLPK------DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANI 75 (249)
T ss_dssp CCSCCCCCCBCCGGGSCT------THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCH
T ss_pred CchHhhcChhhhhhhCCh------hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCH
Confidence 45688888888844 333 57788899999999999999999 887788877 567789999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHcC-CCCCC-cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc------C-chhHHHHH
Q 022417 124 ALCKTSIMAASDIFSAFG-DKLLD-STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI------T-PLPLLQKL 194 (297)
Q Consensus 124 ~Vsk~A~~tl~dLf~~l~-~~~md-~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~------s-~~kll~~L 194 (297)
.|...||.+++.|++.++ . .+. ++ ...+++.+|.+.++.+.-|++.+..||++++.++ + ...+++.|
T Consensus 76 ~v~~~A~~al~~la~~l~~~-~f~~~y---~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l 151 (249)
T 2qk1_A 76 QAVALAAQSVELICDKLKTP-GFSKDY---VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDI 151 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-TSCHHH---HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc-cccHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHH
Confidence 999999999999999999 7 787 65 7889999999999999999999999999999999 5 66899999
Q ss_pred HhhccCCCHHHHHHHHHHHHHHHHhhCc--hhhhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 195 KTYVKHTNPRIRAKAAISISICVTKMGL--EGMKELGL-VSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 195 ~~~~~hKn~~VR~~aA~~L~~~v~~~g~--~~l~~~~~-~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
..+++|||+.+|..+..+|..++...+. ..+.. .+ +.+++.+.++++|.++++|..|..++..+..+++++
T Consensus 152 ~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~-~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 152 LEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR-YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHH-HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 9999999999999999999999998875 33323 37 899999999999999999999999999999999864
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=138.64 Aligned_cols=193 Identities=13% Similarity=0.161 Sum_probs=155.8
Q ss_pred HHhccCCcCHHHHHHHHHHHHHHHhhChhhhh-----HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 73 LIEGLDSKDWTNVCESLNNARRFALHHSSLLE-----PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 73 ~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~-----~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
+-+.|.|++|..|.+|+..++.+....+.... ..+..+...+.+.++|.+.+|...|+.++..++..++......
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 44789999999999999999999876654332 2356677788899999999999999999999998877622111
Q ss_pred c--hhhHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHhcCc-hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 148 T--SDALDNLVLQLLMK-ASQDKKFVCEEADRALNTMVESITP-LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 148 ~--~~~ld~ll~~LL~K-a~~sn~FI~e~A~~AL~~Mv~~~s~-~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
. ...+..+++.|+.| .++++..+++.+..++..++..+.+ ..++..|..+.+||||.||..+..||..++..+|..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~ 173 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT 173 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC
Confidence 1 12367788999999 4789999999999999999888764 678888999999999999999999999999999976
Q ss_pred hhh-hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 224 GMK-ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 224 ~l~-~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+. ...+..+++.+.++++|++++||..|..++..+|..+|.
T Consensus 174 ~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 174 NVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp TCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred cCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 543 233678889999999999999999999999999998874
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-13 Score=122.02 Aligned_cols=201 Identities=17% Similarity=0.204 Sum_probs=165.3
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhh
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDA 151 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ 151 (297)
.+...|-+.||..+++|+..|-......++.+...+.-++.-+.--+.+-..+|...++..+..+|..++.....-...+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 66677788999999999999999988888777666655555554444577889999999999999998876321111223
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHH
Q 022417 152 LDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLV 231 (297)
Q Consensus 152 ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~ 231 (297)
...+++.|+.|.|+.+.=+|+.+...|..|..-++|.++++.|..|.+|||.++|..+..++..+++..|... .
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~------~ 203 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP------L 203 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG------G
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc------c
Confidence 5788999999999999999999999999999889999999999999999999999999999999999999762 3
Q ss_pred HHH---HHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCChhh
Q 022417 232 SLV---QVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPID 286 (297)
Q Consensus 232 ~ll---~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (297)
+.+ +.++++++|++++||++|-.++..+|...|+ ..-.++. .|++..
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd-------~v~k~lg-~L~~~~ 253 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD-------QMWKAAG-RMADKD 253 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT-------HHHHHHC-CCCHHH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-------HHHHHHh-cCCHHH
Confidence 345 9999999999999999999999999988863 3334553 575543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-14 Score=148.36 Aligned_cols=182 Identities=14% Similarity=0.167 Sum_probs=159.2
Q ss_pred cHHHHHhccCCc-CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSK-DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~-dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..+++.|++. +|+.++.||..+.+|+...|+.+...|.++++.|...|++++..|++.|..|+..+|..++|.++++
T Consensus 134 ~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~ 213 (986)
T 2iw3_A 134 LLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIER 213 (986)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGG
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhh
Confidence 466777777544 8999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c----------hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 148 T----------SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 148 ~----------~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
+ ++.+++++ +....++||.+.-..+|..| +|.|.++++.++..+.+++|..+.|++
T Consensus 214 ~~~~~~~~~~~p~~~~~~~-----~~l~~~tfv~~v~~~~l~~~---------~p~l~r~l~~~~~~~~r~~~~~~~n~~ 279 (986)
T 2iw3_A 214 FIPSLIQCIADPTEVPETV-----HLLGATTFVAEVTPATLSIM---------VPLLSRGLNERETGIKRKSAVIIDNMC 279 (986)
T ss_dssp GHHHHHHHHHCTTHHHHHH-----HHHTTCCCCSCCCHHHHHHH---------HHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcChhhhHHHH-----HHhhcCeeEeeecchhHHHH---------HHHHHhhhccCcchhheeeEEEEcchh
Confidence 7 44455555 44567899999999999999 999999999999999999999999999
Q ss_pred HhhCchhhhh-ccHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 218 TKMGLEGMKE-LGLVSLVQVAAGL-LNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 218 ~~~g~~~l~~-~~~~~ll~~~a~~-l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
+.+..+.... | +.++++.+.+- =+=++||+|+.+.+++..|.++.+.
T Consensus 280 ~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 280 KLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp TTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 9999877543 5 67777776663 3456899999999999999998775
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-08 Score=99.07 Aligned_cols=178 Identities=11% Similarity=0.121 Sum_probs=138.4
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhC-hhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHH-SSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h-~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
+..+...+++.+|..+..++..+..++..- ++.+ ...+++.+...+++.-..|-..|+.+++.++..+|. .+
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~--- 476 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK-EW--- 476 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-HH---
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hh---
Confidence 444555667889999999988888888643 3322 245777888888998889999999999999999887 21
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch----hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL----PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~----kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
.++.+++.|+.-..+.+.-+|..+-.++..++..+.+. .+++.|...+++.++.||..++..|..++..+|...
T Consensus 477 --~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 554 (588)
T 1b3u_A 477 --AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554 (588)
T ss_dssp --HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH
T ss_pred --HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhh
Confidence 24556665554334577889999999999998887653 678888888899999999999999999998888542
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
+ .+.+++.+.++++|.++++|.+|..++..+.
T Consensus 555 ~----~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 555 L----QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp H----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred h----HHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 2 2677888888899999999999999987654
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.1e-07 Score=92.30 Aligned_cols=186 Identities=13% Similarity=0.152 Sum_probs=143.0
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh--HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE--PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~--~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
+..++..+++++|..+..+...+-+++...+.... ..++.+++.+...+++....|-+.|+.+++.++..+|. ..
T Consensus 283 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~-- 359 (588)
T 1b3u_A 283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DN-- 359 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HH--
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH-hH--
Confidence 33444555666777777777777777665433211 34667777888888998889999999999999999987 21
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc----hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP----LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~----~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
..+.+++.|+.-..+.+..|+..+-.+|..++..+.. ..+++.|....++++..+|..++.++..+...+|.+
T Consensus 360 ---~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~ 436 (588)
T 1b3u_A 360 ---TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp ---HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG
T ss_pred ---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH
Confidence 1344555555555677889999999999999988774 457888888889999999999999999999988864
Q ss_pred hhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 224 GMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 224 ~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+ .+.+++.+..++.|.++++|..|-.++..+...++.
T Consensus 437 ~~----~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 437 FF----DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp GC----CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HH----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 22 367888899999999999999999999888887764
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-06 Score=80.68 Aligned_cols=195 Identities=17% Similarity=0.156 Sum_probs=147.8
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHc------CC
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSAF------GD 142 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l------~~ 142 (297)
+..+...+.+.|+..+..++..+..++..+++.+.+.+. .++..+...+++.-..|...|+..++.+.... ..
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~ 298 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333444567889999999999999999999998888888 88888888888888899999999888888753 00
Q ss_pred -----------CCCCcchhhHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhccCC
Q 022417 143 -----------KLLDSTSDALDNLVLQLLMKASQ-------DKKFVCEEADRALNTMVESITP---LPLLQKLKTYVKHT 201 (297)
Q Consensus 143 -----------~~md~~~~~ld~ll~~LL~Ka~~-------sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~hK 201 (297)
....-....+..+++.|+....+ ++.-+|..|..+|..++..+.. ..+++.+..++++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~ 378 (462)
T 1ibr_B 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378 (462)
T ss_dssp CTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS
T ss_pred cccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC
Confidence 01111011245667666655432 2346899999999999998872 24555666788899
Q ss_pred CHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 202 NPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
+..+|..+...|..+.+..+.+.+.. .+..+++.+..+++|.+|.+|.+|-.++..+-..++.
T Consensus 379 ~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 379 DWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp SHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred ChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 99999999998888887444222322 3688999999999999999999999999998887765
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.65 E-value=8e-07 Score=75.51 Aligned_cols=190 Identities=15% Similarity=0.171 Sum_probs=133.0
Q ss_pred ccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCC
Q 022417 66 PESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKL 144 (297)
Q Consensus 66 pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~ 144 (297)
++.....+...|.++|+..+..|+..|+.|+.+.++.....+ ..+++.++..+++.-..|...|+.+++.|...-.. .
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-Q 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-H
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH-H
Confidence 334445677788999999999999999999987766443322 24778888889988889999999999998732110 0
Q ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 145 LDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 145 md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.+... -...++.|+.-..+.+.-+++.|-.+|..|+.+... ...++.|...+++.++.+|..++..|.+++
T Consensus 89 ~~~i~--~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 89 IQAVI--DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHH--HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHH--HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 00000 001334444444567788999999999999754322 346888888899999999999999999998
Q ss_pred HhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 218 TKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 218 ~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
..-. +......-...++.+.+++.+.++++|+.|-.++..|
T Consensus 167 ~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 167 SGGN-EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp TSCH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cCCc-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 7421 2111111234667778888999999999999888765
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-06 Score=89.31 Aligned_cols=191 Identities=9% Similarity=0.122 Sum_probs=147.9
Q ss_pred cHHHHHhccCCc--CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCc---------------chHHHHHHHH
Q 022417 69 MIPCLIEGLDSK--DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNP---------------RSALCKTSIM 131 (297)
Q Consensus 69 ~l~~~l~~L~s~--dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknL---------------RS~Vsk~A~~ 131 (297)
.+..++..+++. +|..+..++..+..++...++.+.+.+..+++.+...+.+. ...+-..++.
T Consensus 499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 578 (861)
T 2bpt_A 499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578 (861)
T ss_dssp HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHH
Confidence 455666667643 49999999999999999888777777777777776666532 2345568999
Q ss_pred HHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHH
Q 022417 132 AASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKK-FVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPR 204 (297)
Q Consensus 132 tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~-FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~ 204 (297)
+++.++..+|. .+.+. ++.++..++.-..+.+. .+++.+-.++..++..... ..+++.|..+++++++.
T Consensus 579 ~l~~l~~~~~~-~~~~~---~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~ 654 (861)
T 2bpt_A 579 VLAAVIRKSPS-SVEPV---ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSP 654 (861)
T ss_dssp HHHHHHHHCGG-GTGGG---HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHhhh-hhHHH---HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHH
Confidence 99999999998 67665 66676666655445444 7899999999999877643 35777787888889999
Q ss_pred HHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHHHHhcc
Q 022417 205 IRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRL--PEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 205 VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~--pE~R~~aRk~l~~L~~~~~~ 265 (297)
+|..+..++..+++..|. .+..+ .+.+++.+.+.+.|.+ +++|..+-.++..+-..++.
T Consensus 655 vr~~a~~~l~~l~~~~~~-~~~~~-~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 655 VSITAVGFIADISNSLEE-DFRRY-SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHHHHTGG-GGHHH-HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhch-hccch-HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 999999999999998883 33333 6788888888888865 99999999999888887764
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-06 Score=89.23 Aligned_cols=192 Identities=16% Similarity=0.104 Sum_probs=141.9
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS 149 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~ 149 (297)
+..+.+.+.+.+|..|..|+..+..++...++.+.+.+..+++.+...+++....|-.+|+.+++.++..++......
T Consensus 361 ~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~-- 438 (852)
T 4fdd_A 361 LPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-- 438 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH--
Confidence 334445668899999999999999999988888889999999999999999999999999999999999887634443
Q ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 150 DALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
.++.++..|+....+++.-+++.|..||..+++++.+ ..+++.|....+..+......+...+..+++.+|..
T Consensus 439 -~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 439 -YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp -THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh
Confidence 4788888888877788899999999999999988754 356666665555444455555667777777777643
Q ss_pred hhhhccHHHHHHHHH---HhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 224 GMKELGLVSLVQVAA---GLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 224 ~l~~~~~~~ll~~~a---~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
-....-.+.+++.+. ..+.|.+++.| .+-+++..+-..++.
T Consensus 518 ~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~ 561 (852)
T 4fdd_A 518 LNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQS 561 (852)
T ss_dssp GCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGG
T ss_pred hccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhH
Confidence 211111345555444 45678888886 444555555555543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=9e-07 Score=91.31 Aligned_cols=191 Identities=12% Similarity=0.068 Sum_probs=149.5
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--cCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSA--FGDKLL 145 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~--l~~~~m 145 (297)
..+..++..+.++|+..+..++..+-+|+.++|+.+.+.++.++..+.+.+++.-..|...|+.++..+++. +++ .+
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~-~~ 293 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD-VL 293 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHH-HH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHH-HH
Confidence 345566667788999999999999999999999999999999999999999998889999999888777642 111 22
Q ss_pred CcchhhHHHHHHHHHHHh-----------cc-----------ccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhccC
Q 022417 146 DSTSDALDNLVLQLLMKA-----------SQ-----------DKKFVCEEADRALNTMVESITP---LPLLQKLKTYVKH 200 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka-----------~~-----------sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~h 200 (297)
.+ .+..+++.|+... .+ +.--++..|..+|+.++...+. ..+++.|....++
T Consensus 294 ~~---~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~ 370 (852)
T 4fdd_A 294 VR---HLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH 370 (852)
T ss_dssp TT---THHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC
T ss_pred HH---HHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 33 3677888887775 23 2334788999999999988753 2466666677889
Q ss_pred CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 201 TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 201 Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
.++.+|..++..|..+.+..+ +.+. ..++.+++.+..++.|.++.+|..+-.++..+-..++
T Consensus 371 ~~~~~R~aa~~alg~i~~~~~-~~~~-~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 371 HEWVVKESGILVLGAIAEGCM-QGMI-PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp SSHHHHHHHHHHHHHTTTTTH-HHHG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcch-HHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999988887655 2333 2378999999999999999999988888776665543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.59 E-value=3.1e-06 Score=86.17 Aligned_cols=188 Identities=15% Similarity=0.128 Sum_probs=138.9
Q ss_pred HHHHHhccCCc-CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 70 IPCLIEGLDSK-DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKN--PRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 70 l~~~l~~L~s~-dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vkn--LRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
+..++..|.+. +|..+..++..+..|+....+.+.+.+.+++..+...+++ ....+...++.+++++...+|. .+.
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~-~~~ 729 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG-EFK 729 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG-GGG
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhch-hHH
Confidence 34444555555 8999999999999999876666778889999999998887 4456888999999999999998 676
Q ss_pred cchhhHHHHHHHHHHHhccc-----------cHHHHHHHHHHHHHHHHhcCc----------------hhHHHHHHhhcc
Q 022417 147 STSDALDNLVLQLLMKASQD-----------KKFVCEEADRALNTMVESITP----------------LPLLQKLKTYVK 199 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~s-----------n~FI~e~A~~AL~~Mv~~~s~----------------~kll~~L~~~~~ 199 (297)
+. ++.+++.|+.-...+ ..-+++.+-.++..+++.+.+ ..+++.|.....
T Consensus 730 ~~---l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 806 (876)
T 1qgr_A 730 KY---LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG 806 (876)
T ss_dssp GG---HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHT
T ss_pred HH---HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhc
Confidence 64 777776655433222 126888899999988877532 123444434445
Q ss_pred CC--CHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHH
Q 022417 200 HT--NPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAG-LLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 200 hK--n~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~-~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
+. +..||..++.+|..+++.+|.+.+..+-.+.+++.+.. ++.|.++++|..|..++..+.+
T Consensus 807 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 807 DEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHHHH
Confidence 65 89999999999999999998634444423455555555 8899999999999999887764
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.4e-06 Score=89.49 Aligned_cols=190 Identities=12% Similarity=0.117 Sum_probs=153.4
Q ss_pred HHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcch--HHHHHHHHHHHHHHHHcCCCCCCcchh
Q 022417 73 LIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRS--ALCKTSIMAASDIFSAFGDKLLDSTSD 150 (297)
Q Consensus 73 ~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS--~Vsk~A~~tl~dLf~~l~~~~md~~~~ 150 (297)
+...+.+++|..+..++..+.+++...++.+.+.+..+++.+...+++--. .|.-+|+.+++.++..+|...+.+
T Consensus 439 l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~--- 515 (1230)
T 1u6g_C 439 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP--- 515 (1230)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHH---
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHh---
Confidence 344588999999999999999999988888888999999999999998754 788899999999998887744554
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------------hhHHHHHHhhc--cCCCHHHHHHHHHHHHH
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------------LPLLQKLKTYV--KHTNPRIRAKAAISISI 215 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------------~kll~~L~~~~--~hKn~~VR~~aA~~L~~ 215 (297)
.++.+++.|+....+.+.-++.++-.++..+++.+.+ ..+++.|...+ .+.++.||..++.++..
T Consensus 516 ~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~ 595 (1230)
T 1u6g_C 516 HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595 (1230)
T ss_dssp HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3778888888877888888888888999999987654 46888887766 67899999999999999
Q ss_pred HHHhhCchhh------hh--------------------------------ccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 216 CVTKMGLEGM------KE--------------------------------LGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 216 ~v~~~g~~~l------~~--------------------------------~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
++...|..-. .. .....+++.+..++.|.++.+|..+=.++.
T Consensus 596 L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~ 675 (1230)
T 1u6g_C 596 IICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675 (1230)
T ss_dssp HHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9988774310 00 002566777777888999999999999998
Q ss_pred HHHHHhcc
Q 022417 258 SMYNAFTE 265 (297)
Q Consensus 258 ~L~~~~~~ 265 (297)
.+...++.
T Consensus 676 ~l~~~~~~ 683 (1230)
T 1u6g_C 676 ILIKNYSD 683 (1230)
T ss_dssp HHHHHCCT
T ss_pred HHHhcccc
Confidence 88877753
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-06 Score=86.30 Aligned_cols=192 Identities=13% Similarity=0.086 Sum_probs=152.1
Q ss_pred cHHHHHhccCCcCH-HHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDW-TNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW-~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..++..+++.+| ..+..++..+..++....+.+.+.+..+++.+...+++-...+...|+.++++++..+|. .+.+
T Consensus 598 l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~ 676 (861)
T 2bpt_A 598 LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-DFRR 676 (861)
T ss_dssp HHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHH
T ss_pred HHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch-hccc
Confidence 34455566666677 778888989999998777778888999999999999877788999999999999999997 6665
Q ss_pred chhhHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHhcCch------hHHHHHHhhccCCC-----------HHHHHH
Q 022417 148 TSDALDNLVLQLLMKASQDK--KFVCEEADRALNTMVESITPL------PLLQKLKTYVKHTN-----------PRIRAK 208 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn--~FI~e~A~~AL~~Mv~~~s~~------kll~~L~~~~~hKn-----------~~VR~~ 208 (297)
. ++.++..|+....+.+ .-+++.+-.++..|+.++... .+++.|...+.+.. ..+|..
T Consensus 677 ~---~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~ 753 (861)
T 2bpt_A 677 Y---SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEA 753 (861)
T ss_dssp H---HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 4 7777777776665544 779999999999999887542 56777766655432 568999
Q ss_pred HHHHHHHHHHhhCc--hhhhhccHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHh-cc
Q 022417 209 AAISISICVTKMGL--EGMKELGLVSLVQVAAGLLNDR----LPEAREAARSMVNSMYNAF-TE 265 (297)
Q Consensus 209 aA~~L~~~v~~~g~--~~l~~~~~~~ll~~~a~~l~D~----~pE~R~~aRk~l~~L~~~~-~~ 265 (297)
+...+..++..+|. ..+..+ +..+++.+.+++.|. +.++|..|-.++..|-.++ +.
T Consensus 754 ~l~~~~~i~~~l~~~~~~~~~~-~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~ 816 (861)
T 2bpt_A 754 VLDAYVGIVAGLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp HHHHHHHHHHHTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHccCHHHHHHH-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999988873 223333 688888888888885 8999999999999999998 54
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.1e-05 Score=82.02 Aligned_cols=195 Identities=17% Similarity=0.162 Sum_probs=149.5
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC-------
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG------- 141 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~------- 141 (297)
+..+...+.+.||..+..++..+-+++..+++.+.+.+. .++..+...+.+.-..|...|+..+..+.....
T Consensus 219 l~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~ 298 (876)
T 1qgr_A 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhc
Confidence 455556677889999999999999999999999999898 999999998888888899999988888876531
Q ss_pred ----------CCCCCcchhhHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhccCC
Q 022417 142 ----------DKLLDSTSDALDNLVLQLLMKAS-------QDKKFVCEEADRALNTMVESITP---LPLLQKLKTYVKHT 201 (297)
Q Consensus 142 ----------~~~md~~~~~ld~ll~~LL~Ka~-------~sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~hK 201 (297)
+....-....+..+++.++.... ++.--+|..|..+|..++..+.. ..+++.+..++++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~ 378 (876)
T 1qgr_A 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378 (876)
T ss_dssp HHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS
T ss_pred cccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCC
Confidence 00111101124667777776654 23456889999999999988763 35666666788899
Q ss_pred CHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 202 NPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
++.+|..++..+..+.+..+++.+..+ +..+++.+..+++|.++.+|..|-.++..+-..++.
T Consensus 379 ~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 441 (876)
T 1qgr_A 379 DWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred ChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch
Confidence 999999999888888776553333332 678899999999999999999999888888777654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.51 E-value=4.9e-06 Score=71.01 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=76.7
Q ss_pred CCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC
Q 022417 63 IPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 63 l~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~ 142 (297)
+......+..++..|++.||..+..++..|.++.. .+.+..+...+++....|-..|+.+++.+- .
T Consensus 14 ~~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----~ 79 (211)
T 3ltm_A 14 LRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D 79 (211)
T ss_dssp --CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC----C
T ss_pred hhcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C
Confidence 34556778889999999999999999877776532 133445555666666677777777776642 2
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
+. .++ .|+.-..+.+..++..|-.+|..+ .....++.|...+.+.++.||..++..|..
T Consensus 80 ----~~--~~~----~L~~~l~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 138 (211)
T 3ltm_A 80 ----ER--AVE----PLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDEDWFVRIAAAFALGE 138 (211)
T ss_dssp ----GG--GHH----HHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred ----HH--HHH----HHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11 122 222222455666777666666655 234466666666677777777766665544
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-05 Score=86.30 Aligned_cols=192 Identities=14% Similarity=0.161 Sum_probs=151.3
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhC-------------------hhhhhHHHHHHHHHHHHHhcCcchHHHHHHH
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHH-------------------SSLLEPNLEKVMAVVVKAMKNPRSALCKTSI 130 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h-------------------~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~ 130 (297)
+..++..+.+.++..+..++..+..+.... .+.+...++.++..+.+.+++--..+-..+|
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 344555666778888889998888877532 1344567788888888889987777778899
Q ss_pred HHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCC
Q 022417 131 MAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDK--KFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHT 201 (297)
Q Consensus 131 ~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn--~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hK 201 (297)
.+++++...++. .+.++ ++.++..++.-..+.+ ..++.++-.++..++....+. .+++.|..+.+++
T Consensus 456 ~~L~~l~~~~~~-~l~~~---l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~ 531 (1230)
T 1u6g_C 456 NMLTELVNVLPG-ALTQH---IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDP 531 (1230)
T ss_dssp HHHHHHHHHSTT-TTGGG---HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCS
T ss_pred HHHHHHHHHchh-hhHHH---HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHccc
Confidence 999999999776 67654 7888888877776654 489999999999998876654 5778888888999
Q ss_pred CHHHHHHHHHHHHHHHHhhCc------hhhhhccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 202 NPRIRAKAAISISICVTKMGL------EGMKELGLVSLVQVAAGLL--NDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~~g~------~~l~~~~~~~ll~~~a~~l--~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
+..||..+...+..+++.+|. ..+..+ .+.+++.+...+ .|.++++|..+-.++..|-..++..
T Consensus 532 ~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~-~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~ 603 (1230)
T 1u6g_C 532 FYKITSEALLVTQQLVKVIRPLDQPSSFDATPY-IKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603 (1230)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH-HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred chHHHHHHHHHHHHHHHHhcCcccccccchHHH-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch
Confidence 999999888899999988875 122223 678888888888 8999999999999999998887654
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.49 E-value=9.9e-06 Score=71.15 Aligned_cols=150 Identities=12% Similarity=0.149 Sum_probs=124.3
Q ss_pred ccHHHHHhcc-CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 68 SMIPCLIEGL-DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 68 ~~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
..+..+...+ ++.+-..+..|++.+..|+..-...+.+.+..+++.|...+++....|...|+.++..++...+
T Consensus 56 ~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----- 130 (242)
T 2qk2_A 56 ALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----- 130 (242)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-----
Confidence 3455556667 4889999999999999999866667788899999999999999999999999999999986431
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL--------PLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~--------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
++.++..|+.-..+.|..+++.+-..|..++....+. .+++.|...+.+.++.||..+..++..+..
T Consensus 131 -----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 131 -----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp -----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 4567766666566788999999999999988776432 688888889999999999999999999999
Q ss_pred hhCchhhhh
Q 022417 219 KMGLEGMKE 227 (297)
Q Consensus 219 ~~g~~~l~~ 227 (297)
.+|.+.+..
T Consensus 206 ~vg~~~~~~ 214 (242)
T 2qk2_A 206 LMGDKAVTP 214 (242)
T ss_dssp HHCHHHHGG
T ss_pred HcCHHHHHH
Confidence 999654443
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.48 E-value=6e-06 Score=71.12 Aligned_cols=189 Identities=19% Similarity=0.147 Sum_probs=135.2
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..++..|.+.+++.+..|+..|+.|+..+++...... ..+++.++..+++....|...|+.+++.|...-.. ..+.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-AIKA 81 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH-HHHH
Confidence 467888999999999999999999999987774433322 24778888999988899999999999988742100 0000
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
.. -...+..|+.-..+++.-+++.|-.+|..++...... ..++.|...+++.++.+|..++..|.++....
T Consensus 82 ~~--~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 82 IV--DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HH--HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HH--HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 00 0023444444444677889999999999997543222 46888888999999999999999999988642
Q ss_pred CchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 221 GLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
. .......-...++.+..++.+.++++|..+-.++..|-.
T Consensus 160 ~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 160 D-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp H-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 2 111111124467778888889999999998888776643
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.2e-06 Score=72.09 Aligned_cols=192 Identities=17% Similarity=0.100 Sum_probs=138.5
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..++..|.+.+...+..++..|..|+.++++.-...+ ..+++.++..+++....|...|+.+++.|+..-.. ..+.
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~ 123 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-AIKA 123 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHH
Confidence 467788889999999999999999999987665433322 24677888889988899999999999999842111 0000
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
.. -...+..|+.-..+++.-++..+-.+|..|+...... ..++.|...+.+.++.+|..++..|.+++..
T Consensus 124 ~~--~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~- 200 (252)
T 4hxt_A 124 IV--DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG- 200 (252)
T ss_dssp HH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-
T ss_pred HH--HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC-
Confidence 00 0123444444445677889999999999887653222 3788898999999999999999999998862
Q ss_pred Cchhhh-hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 221 GLEGMK-ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 221 g~~~l~-~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+... ...-..+++.+.+++.+.++++|..|-.++..|......
T Consensus 201 -~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 201 -PTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp -BHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 22211 111234677788889999999999999999988775544
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-05 Score=68.36 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=104.3
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
......+++.|++.||..+..|+..|.++.. ...+..+...+++....|-+.|+.+++.+ +.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~----~~---- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQI----GD---- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh----CC----
Confidence 3556788899999999999999887776532 13345566677788888888888888765 32
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
+. .++.++ .-..+.+..++..|-.+|..+ .....++.|...+++.++.||..++..|..+ |.
T Consensus 75 ~~--~~~~L~----~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~---- 136 (201)
T 3ltj_A 75 ER--AVEPLI----KALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDEDWFVRIAAAFALGEI----GD---- 136 (201)
T ss_dssp GG--GHHHHH----HHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----TC----
T ss_pred HH--HHHHHH----HHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC----
Confidence 11 233232 223467788888888888776 3446778888888888899988887766543 22
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
...++.+..++.|.++++|..|-.++..+
T Consensus 137 ----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 137 ----ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 23345556667777777777777666654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.7e-05 Score=67.61 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=116.6
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+..++..|.+.||..+..++..|.++.. .+.+..+...+++.-..|-..|+.+++.+ +. +
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~----~ 111 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQI----GD----E 111 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----G
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc----H
Confidence 567788888899999999999887776632 23445666778888889999999999876 33 1
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE 227 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~ 227 (297)
. .++.+ +.-..+.+..|+..|-.+|..+ .....++.|...+++.++.||..++..|..+ |
T Consensus 112 ~--~~~~L----~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~------ 171 (211)
T 3ltm_A 112 R--AVEPL----IKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSAADALGEI----G------ 171 (211)
T ss_dssp G--GHHHH----HHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----C------
T ss_pred H--HHHHH----HHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----C------
Confidence 1 23333 2323578899999999999887 4567899999999999999999888766654 3
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 228 LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 228 ~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
-+..++.+..+++|.++++|..|..++..+...++
T Consensus 172 --~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 172 --GERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp --SHHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred --chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 25667778888899999999999999887766543
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.2e-06 Score=73.59 Aligned_cols=187 Identities=16% Similarity=0.174 Sum_probs=133.1
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..++..|.+.++..+..++..|..|+..+++.-...+. ..++.++..+++....|.+.|+.+++.|...-.. ..+.
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~ 133 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQA 133 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-HHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCch-HHHH
Confidence 3556778888999999999999999999876654433222 3778889999998899999999999998643211 0000
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
. .-...++.|+.-..+.+.-+++.|-.+|..++.+... ..+++.|...+++.++.+|..++..|.+++..
T Consensus 134 ~--~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~- 210 (252)
T 4db8_A 134 V--IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 210 (252)
T ss_dssp H--HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS-
T ss_pred H--HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC-
Confidence 0 0012444554444567788999999999988764322 34678888888899999999999999999842
Q ss_pred CchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 221 GLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+.+......-...++.+..++.++++++|..|-.++..|
T Consensus 211 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 211 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred CHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 111111111234677788899999999999998887654
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=98.36 E-value=2.5e-05 Score=73.16 Aligned_cols=195 Identities=11% Similarity=0.056 Sum_probs=143.4
Q ss_pred ccHHHHHhccCCc--CHHHHHHHHHHHHHHHhhC-hhhhhHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHcCC
Q 022417 68 SMIPCLIEGLDSK--DWTNVCESLNNARRFALHH-SSLLEPNLEKVMAVVVKAMKNP--RSALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 68 ~~l~~~l~~L~s~--dW~~~~eaL~~LRrLa~~h-~e~l~~~L~~i~~~v~~~vknL--RS~Vsk~A~~tl~dLf~~l~~ 142 (297)
..+..++..+.+. ||..+..|+..++.++... ++.+.+.+..++..+...+++. ...|-+.|+.+++.+...++.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788788 9999999999999999865 7778888899999999999988 678888999999987654443
Q ss_pred CCCCcchhhHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhcCc------h-hHHHHHHhhccCCCHHHHHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKA-SQDKKFVCEEADRALNTMVESITP------L-PLLQKLKTYVKHTNPRIRAKAAISIS 214 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~~s~------~-kll~~L~~~~~hKn~~VR~~aA~~L~ 214 (297)
.++.+ .+...+...|.+. .+...-++..+-.+|..++..... . .+++.+....++.+..||..+..++.
T Consensus 208 -~~~~~--~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 208 -NFDKE--SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp -HHTSH--HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred -hhhhh--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33321 1223323333333 446678999999999999877643 2 67787777888999999999999999
Q ss_pred HHHHhh-------C------------chhhhhccHHHHHHHHHHhccC-------CCHHHHHHHHHHHHHHHHHhcc
Q 022417 215 ICVTKM-------G------------LEGMKELGLVSLVQVAAGLLND-------RLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 215 ~~v~~~-------g------------~~~l~~~~~~~ll~~~a~~l~D-------~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+++.. + ...+.......+++.+.+.+.+ .++.+|..|-.++..|-..+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~ 361 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH
Confidence 988753 0 0001111246777777777743 4578999999999999888873
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-05 Score=69.23 Aligned_cols=157 Identities=11% Similarity=0.133 Sum_probs=128.9
Q ss_pred ccHHHHHhcc-CCcCHHHHHHHHHHHHHHHhhCh-hhhh-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCC
Q 022417 68 SMIPCLIEGL-DSKDWTNVCESLNNARRFALHHS-SLLE-PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKL 144 (297)
Q Consensus 68 ~~l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~-e~l~-~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~ 144 (297)
..+..+...+ ++.+-..+..|++.|..|+..-. ..+. +....+++.|+..+++-+..|...|..++-.++..... .
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~ 138 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-L 138 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-T
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-c
Confidence 4466666777 67888889999999999998665 5677 88999999999999999999999999999999998755 2
Q ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC----------chhHHHHHHhhccCCCHHHHHHHHHHHH
Q 022417 145 LDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT----------PLPLLQKLKTYVKHTNPRIRAKAAISIS 214 (297)
Q Consensus 145 md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s----------~~kll~~L~~~~~hKn~~VR~~aA~~L~ 214 (297)
.... .++.++..|+.-....|.-+++.+-.+|...+.... +..+++.|..++.+.++.||..+..++.
T Consensus 139 ~~~~--~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 139 ASSG--RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFA 216 (249)
T ss_dssp CTTC--TTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ccCC--cHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2210 156666666654455688999999999999998876 2578888899999999999999999999
Q ss_pred HHHHhhCchhhhh
Q 022417 215 ICVTKMGLEGMKE 227 (297)
Q Consensus 215 ~~v~~~g~~~l~~ 227 (297)
.+...+|.+.+..
T Consensus 217 ~i~~~vG~~~~~p 229 (249)
T 2qk1_A 217 ILIKIFGMNTFVK 229 (249)
T ss_dssp HHHHHHCSGGGHH
T ss_pred HHHHHhCHHHHHH
Confidence 9999999765544
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.5e-06 Score=72.10 Aligned_cols=192 Identities=15% Similarity=0.140 Sum_probs=136.0
Q ss_pred CCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC
Q 022417 63 IPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG 141 (297)
Q Consensus 63 l~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~ 141 (297)
..+.......++..|.++|.+.+..|+..|+++...+++.....+ ..+++.++..+++....|...|+.+++.|...-.
T Consensus 7 ~~~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 7 HHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp CCCTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 345555678999999999999999999999988776444322211 2467888889998889999999999998874211
Q ss_pred CCCCCcchhhHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHH
Q 022417 142 DKLLDSTSDALD--NLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAIS 212 (297)
Q Consensus 142 ~~~md~~~~~ld--~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~ 212 (297)
. ..+ .+- ..++.|+.-..+.+.-+++.|-.+|..+..+-... ..++.|...+++.++.+|..++..
T Consensus 87 ~-~~~----~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 161 (252)
T 4db8_A 87 E-QIQ----AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (252)
T ss_dssp H-HHH----HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred H-HHH----HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 1 000 111 14455555445678899999999999886553322 378888889999999999999999
Q ss_pred HHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 213 ISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 213 L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
|.++...-. +......-..+++.+..++.+.++++|..|=.++..|-
T Consensus 162 L~~l~~~~~-~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 162 LSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHTTSCH-HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCh-HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 999886321 11111111345666777888999999998887777664
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-05 Score=64.73 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=117.2
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+..++..|.+.||..+..++..|.++.. + +.+..+...+++.-..|-..|+.+++.+ +. +
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~----~ 106 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGD--E--------RAVEPLIKALKDEDGWVRQSAAVALGQI----GD----E 106 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G--------GGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC----G
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H--------HHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc----H
Confidence 567788888999999999999877766531 1 3455666778888889999999999875 33 1
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKE 227 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~ 227 (297)
. .++.+ +.-..+.+..|+..|-.+|..+ .....++.|...+.+.++.||..++..|..+ |
T Consensus 107 ~--~~~~L----~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~----~------ 166 (201)
T 3ltj_A 107 R--AVEPL----IKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDEDGWVRQSAADALGEI----G------ 166 (201)
T ss_dssp G--GHHHH----HHHTTCSSHHHHHHHHHHHHHH----TCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH----C------
T ss_pred H--HHHHH----HHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----C------
Confidence 1 23333 2233577889999999999887 3467889999999999999999988776655 3
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 228 LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 228 ~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.+..++.+..++.|.++++|..|..++..+.+
T Consensus 167 --~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 167 --GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp --SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred --chhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 35567778888899999999999998876543
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=98.31 E-value=8.6e-06 Score=76.39 Aligned_cols=193 Identities=13% Similarity=0.074 Sum_probs=138.7
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
...+..++..+.+.|+..+..++..|+.|+.+.++...... ..+++.++..+++.-..|...|+.+++.|...... ..
T Consensus 191 ~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~ 269 (450)
T 2jdq_A 191 SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI-QT 269 (450)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChH-HH
Confidence 45677888889999999999999999999987665433222 24677788888888889999999999998753211 00
Q ss_pred CcchhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 146 d~~~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.. .++ .++..|+.-..+.+.-++..|-.+|..++..... ..+++.|...+++.++.||..++..|.+++
T Consensus 270 ~~---~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 270 QV---ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNAT 346 (450)
T ss_dssp HH---HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HH---HHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 00 000 2444444444557788999999999988764321 357788888888899999999999999998
Q ss_pred HhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 218 TKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 218 ~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.....+.+...--..+++.+..++.+.++++|..+-.++..+-...
T Consensus 347 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 7644333222112346777888899999999999988887776543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-05 Score=69.92 Aligned_cols=129 Identities=11% Similarity=0.014 Sum_probs=93.9
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+..++..|.+.||..+..|+..|.++. . .+++..+...+++.-..|-..|+.+++.+ |. .-.
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l----~~-~~~- 86 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRG--G--------QDAVRLAIEFCSDKNYIRRDIGAFILGQI----KI-CKK- 86 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--C--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS----CC-CTT-
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccC--C--------chHHHHHHHHHcCCCHHHHHHHHHHHHHh----cc-ccc-
Confidence 35778899999999999999998887764 1 34566677788888888888888888765 32 111
Q ss_pred chhhHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHhcC--chhHHHHHHhhccCCCHHHHHHHHHHHHH
Q 022417 148 TSDALDNLVLQLLMK-ASQDKKFVCEEADRALNTMVESIT--PLPLLQKLKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 148 ~~~~ld~ll~~LL~K-a~~sn~FI~e~A~~AL~~Mv~~~s--~~kll~~L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
.++.++..|... ..+.+..++..+-.+|..+....+ ...+++.|...+++.++.||..++..|..
T Consensus 87 ---~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 87 ---CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV 154 (280)
T ss_dssp ---THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred ---cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHh
Confidence 244444443322 246778899999999988875433 45688888888899999999888876654
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.2e-06 Score=79.16 Aligned_cols=193 Identities=11% Similarity=0.088 Sum_probs=139.6
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
..+..++..|.+.|+..+..++..|..|+...++.....+. .+++.++..+++....|...|+.+++.|...-.. ...
T Consensus 257 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 335 (530)
T 1wa5_B 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL-QTQ 335 (530)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-HHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHH-HHH
Confidence 45778888889999999999999999999877765544333 5778888889988889999999999988742111 000
Q ss_pred cchhhH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 147 STSDAL-DNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 147 ~~~~~l-d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
. .+ ..+++.|+.-..+.+.-++..|-.+|..++..... ..+++.|...+.+.++.||..++..|.+++.
T Consensus 336 ~---~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 336 V---VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS 412 (530)
T ss_dssp H---HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred H---HHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 0 01 12344444444556788999999999998764322 2467788888888999999999999999988
Q ss_pred hhCc--hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 219 KMGL--EGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 219 ~~g~--~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
..+. +......-..+++.+..++.+.++++|..+-.++..|.....
T Consensus 413 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 413 GGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 6443 222221123366777778889999999999888887766544
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3.4e-05 Score=72.24 Aligned_cols=187 Identities=13% Similarity=0.081 Sum_probs=132.7
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKN-PRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vkn-LRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+..++..|++.++..+..|+..|..|+...++.-...+ ..++..++..+++ .-..|.+.|+.+++.|+...+. ...
T Consensus 108 ~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~ 186 (450)
T 2jdq_A 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP-PPE 186 (450)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSS-CCC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCC-CCC
Confidence 466777888999999999999999999987665332222 2467777888884 7789999999999999965322 111
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
.. .+..+++.|+.-..+++.-++..+-.+|..++.+... ..+++.|...+.+.++.||..++..|.++...
T Consensus 187 ~~--~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 187 FA--KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp GG--GTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HH--HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 11 1234455555545567788999999999988765432 24788888888999999999999999988764
Q ss_pred hCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 220 ~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
-+. .....--..+++.+..++.+.++++|..|=.++..+
T Consensus 265 ~~~-~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 265 DDI-QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp CHH-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ChH-HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 221 110100124677788889999999998877666554
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=77.78 Aligned_cols=190 Identities=11% Similarity=0.072 Sum_probs=132.2
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
..+..++..|.+.+|..+..++..|..|+..+++.....+ ..+++.+...+.+....|.+.|+.+++.|...-.. .+.
T Consensus 299 ~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~-~~~ 377 (530)
T 1wa5_B 299 RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE-QIQ 377 (530)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHH
T ss_pred CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHH
Confidence 3466778888899999999999999999986665433322 25778888999999999999999999998752111 100
Q ss_pred cchhhH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc----------hhHHHHHHhhccCCCHHHHHHHHHHHHH
Q 022417 147 STSDAL-DNLVLQLLMKASQDKKFVCEEADRALNTMVESITP----------LPLLQKLKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 147 ~~~~~l-d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~----------~kll~~L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
. .+ ..+++.|+.-..+.+.-++..|-.+|..|+...++ ..+++.|...+.+.++.||..++..|.+
T Consensus 378 ~---~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~ 454 (530)
T 1wa5_B 378 A---VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454 (530)
T ss_dssp H---HHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred H---HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 0 00 01222332222345678999999999999887654 2378888888889999999999999999
Q ss_pred HHHhhCchh---------hhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 216 CVTKMGLEG---------MKE-LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 216 ~v~~~g~~~---------l~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
++..-.... ... +.-.-.++.+..+.++.++++++.|..++..++.
T Consensus 455 l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~ 510 (530)
T 1wa5_B 455 ILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG 510 (530)
T ss_dssp HHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 887543210 000 1011235566778899999999988877665544
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.6e-05 Score=75.67 Aligned_cols=193 Identities=13% Similarity=0.114 Sum_probs=137.8
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC---
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD--- 142 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~--- 142 (297)
...+..++..|.+.||..+..++..|..|+.+.++.....+ ..+++.++..+++....|...|+.+++.|...-..
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 322 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQ 322 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHH
Confidence 34577888888999999999999999999986665433222 24778888889998899999999999999852111
Q ss_pred CCCCcchhhHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQD-KKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISIS 214 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~s-n~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~ 214 (297)
..++. .+++.|+.-..+. +.-++..|-.+|..++..... ..+++.|...+.+.++.+|..++..|.
T Consensus 323 ~~~~~------~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~ 396 (528)
T 4b8j_A 323 CIIDH------QALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAIS 396 (528)
T ss_dssp HHHTT------THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHh------hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 00111 1233333333355 788999999999998764221 245677877777789999999999999
Q ss_pred HHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 215 ICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 215 ~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
+++...+.+......-..+++.+..++.+.+++++..+-.++..|......
T Consensus 397 nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~ 447 (528)
T 4b8j_A 397 NATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGET 447 (528)
T ss_dssp HHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 998764333322221234577778889999999999998888888665543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.01 E-value=7.7e-05 Score=72.33 Aligned_cols=188 Identities=11% Similarity=0.106 Sum_probs=130.1
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNP-RSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknL-RS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+..++..|.+.+|..+..++..|..|+.+.++.....+ ..+++.+...+++. ...|.++||.+++.|... .. +
T Consensus 287 ~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~--~~--~ 362 (528)
T 4b8j_A 287 VCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG--NK--D 362 (528)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS--CH--H
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC--CH--H
Confidence 466778888999999999999999999986665443322 34677778888888 899999999999999852 20 1
Q ss_pred cchhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 147 STSDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESITPL--------PLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 147 ~~~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~--------kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.....++ .+++.|+.-..+...-++..|-.||..++.+.++. .+++.|...+.+.++.++..++..|.+++
T Consensus 363 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 0000000 22233333333456779999999999998875432 46777888889999999999999999998
Q ss_pred HhhCchh---------hhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 218 TKMGLEG---------MKE-LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 218 ~~~g~~~---------l~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
..-.... ... ..-...++.+..+..+.++++++.|..++..++
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~ 495 (528)
T 4b8j_A 443 KVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495 (528)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 7543211 111 001123445566788999999999988776554
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00026 Score=62.80 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=113.5
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVV-KAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~-~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
..+..++..|++.||..+..|+..|.++.. .++ .+..++..+. ...++.-..|-..|+.+++.+......
T Consensus 54 ~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~-~~~----~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~---- 124 (280)
T 1oyz_A 54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKI-CKK----CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI---- 124 (280)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHSCC-CTT----THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-ccc----cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----
Confidence 456677788889999999988877766532 112 1333444444 245677788889999999998754322
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
..+..+..|+....+.+..++..|-.+|..+- ....++.|...+++.++.||..++..|..+ |.
T Consensus 125 ----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~---- 188 (280)
T 1oyz_A 125 ----YSPKIVEQSQITAFDKSTNVRRATAFAISVIN----DKATIPLLINLLKDPNGDVRNWAAFAININ----KY---- 188 (280)
T ss_dssp ----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------CCHHHHHHHHTCSSHHHHHHHHHHHHHH----TC----
T ss_pred ----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHhh----cc----
Confidence 12345555555556788899999988887653 345788888888899999999888777543 21
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+-+..++.+..++.|.++++|..+-.++..+
T Consensus 189 --~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 189 --DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp --CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred --CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 1245667777888899999998887776653
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00043 Score=68.96 Aligned_cols=183 Identities=13% Similarity=0.084 Sum_probs=126.7
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC-CCCcchh
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK-LLDSTSD 150 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~-~md~~~~ 150 (297)
.+...|.+.++..|..|...+.++...+|+.+.. ..++..+...+.+.-..|..+|+.+++++...-... .++-
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l--- 199 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL--- 199 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC---
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc---
Confidence 4566778889999999999999998888886643 467788888888888899999999999987653321 1221
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-----hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC-chh
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-----LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG-LEG 224 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-----~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g-~~~ 224 (297)
....+..|+....+.+.|.+-.. |..+...++. ..+++.|...++|.|+.|+..++.++..+...++ .+.
T Consensus 200 -~~~~~~~Ll~~l~~~~~~~q~~i---l~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~ 275 (591)
T 2vgl_B 200 -NPQNINKLLTALNECTEWGQIFI---LDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSD 275 (591)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHH---HHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTB
T ss_pred -cHHHHHHHHHcCCCCCchHHHHH---HHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHH
Confidence 34456666666566778876543 3444444432 4678888888999999999999998887765441 111
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
....-..++...+..+ .++++++|+.|=+.+..+-..++
T Consensus 276 ~~~~~~~~~~~~L~~L-~~~d~~vr~~aL~~l~~i~~~~p 314 (591)
T 2vgl_B 276 YYNMLLKKLAPPLVTL-LSGEPEVQYVALRNINLIVQKRP 314 (591)
T ss_dssp SHHHHHHHTHHHHHHH-TTSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHH-hcCCccHHHHHHHHHHHHHHhCh
Confidence 1111123444444444 45899999999999988876544
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00024 Score=70.80 Aligned_cols=178 Identities=13% Similarity=0.106 Sum_probs=124.0
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
+..+..+-+.|++.|=.++.+++..+-.+...+.+ .......+++.+.+..-.+-|.+-.+++.++.. +
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-----~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~------~ 80 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-----VSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS------Q 80 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-----CGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH------S
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-----hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc------C
Confidence 45678888889999888888888766665543433 223344566678999999999999999888764 1
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~ 226 (297)
++ .+.-++..|.+-..+.|.+++..|-++|..+...--...+++.|...+.|.++.||++++.++..+... +++.+.
T Consensus 81 ~e--~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~-~p~~~~ 157 (591)
T 2vgl_B 81 PD--MAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDI-NAQMVE 157 (591)
T ss_dssp HH--HHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHS-SCCCHH
T ss_pred ch--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhh-Chhhcc
Confidence 21 222233333333456899999877555544421111235667788899999999999999999999984 333221
Q ss_pred hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 227 ~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
-..+++.+..+++|.+|.+|..|=.++..+..
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 14688999999999999999998777766543
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0007 Score=62.40 Aligned_cols=189 Identities=15% Similarity=0.103 Sum_probs=126.2
Q ss_pred ccccHHHHHhccCCc------------CHHHHHHHHHHHHHHHhhCh--hhhhHHHHHHHHHHHH-HhcCcchHHHHHHH
Q 022417 66 PESMIPCLIEGLDSK------------DWTNVCESLNNARRFALHHS--SLLEPNLEKVMAVVVK-AMKNPRSALCKTSI 130 (297)
Q Consensus 66 pe~~l~~~l~~L~s~------------dW~~~~eaL~~LRrLa~~h~--e~l~~~L~~i~~~v~~-~vknLRS~Vsk~A~ 130 (297)
+-..++.++.-|.+. +=+.+..|+..|..|+.... ..|. .+ ..++.++. .+++.-..|...|+
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~-~~-G~l~~Lv~~lL~s~~~~vr~~Aa 103 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFC-QL-SGMHLLVGRYLEAGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHH-HT-THHHHHHHTTTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHH-Hc-CCHHHHHHHHHcCCCHHHHHHHH
Confidence 344467777766543 34678999999999987322 1111 11 23456677 88999999999999
Q ss_pred HHHHHHHHHc---CCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccC
Q 022417 131 MAASDIFSAF---GDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKH 200 (297)
Q Consensus 131 ~tl~dLf~~l---~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~h 200 (297)
.++|.+...- +...++. ..++.++ .||.. +.+.-+++.|-.||..++.+-.+ ...++.|...+++
T Consensus 104 ~~Lg~ia~~n~~~~~~vv~~--g~l~~Ll-~LL~~--~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 104 QLIGTCSQNVAAIQEQVLGL--GALRKLL-RLLDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHHT--THHHHHH-HHHHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHhCCHHHHHHHHHC--CCHHHHH-HHHcc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 9999998531 1101111 1233332 33321 34678999999999999876543 2367778888889
Q ss_pred CCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 201 TNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 201 Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
.++.++..++..|.+++.. +.+......-.-+++.+..++...++++|+.+-.++..|-..
T Consensus 179 ~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 179 QVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999876 333322221234556666778888999999999888777554
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.001 Score=70.84 Aligned_cols=151 Identities=18% Similarity=0.228 Sum_probs=124.2
Q ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC-CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc
Q 022417 109 KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD-KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP 187 (297)
Q Consensus 109 ~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~-~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~ 187 (297)
.++..+.+.+++=.+. -.||.+++.||+.++. ..++| .+-.+++.+|...+|....|+++|..|+.+++..++|
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~---~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~ 128 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP---YIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNP 128 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH---HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc---chHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH
Confidence 6888999999998888 9999999999977755 13444 3667788999988999999999999999999999998
Q ss_pred h---hHHHHHHhhccCCC-HHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 188 L---PLLQKLKTYVKHTN-PRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 188 ~---kll~~L~~~~~hKn-~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
. .++|.|..++.+.+ =+.+..+..++..+++.. +. .....+..+++.+..++-|--+|+..+|++++..+-...
T Consensus 129 ~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~-~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~ 206 (986)
T 2iw3_A 129 VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KD-QVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETV 206 (986)
T ss_dssp GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HH-HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HH-HHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcC
Confidence 3 68888888886554 467777778888888765 23 344558999999999999999999999999999877666
Q ss_pred ccc
Q 022417 264 TEN 266 (297)
Q Consensus 264 ~~~ 266 (297)
+..
T Consensus 207 ~n~ 209 (986)
T 2iw3_A 207 DNK 209 (986)
T ss_dssp CCT
T ss_pred CCc
Confidence 554
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00054 Score=57.73 Aligned_cols=146 Identities=18% Similarity=0.204 Sum_probs=106.5
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..++..|.+.++..+..|+..|..|+.+.++.....+ ...++.++..+++....|.+.|+.+++.|...-.. ..+.
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~ 133 (210)
T 4db6_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQA 133 (210)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHH-HHHH
Confidence 466788889999999999999999999976665433222 23677888889999999999999999999742111 0000
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
.. -...++.|+.-..+.+.-+++.|-.+|..++.+.... ..++.|...+.+.++.||..++..|.++.
T Consensus 134 ~~--~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 134 VI--DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HH--HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HH--HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 00 0123455555445577889999999999998763322 36788888889999999999998887764
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00032 Score=68.52 Aligned_cols=194 Identities=13% Similarity=0.148 Sum_probs=131.6
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPN-LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~-L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
+..+..+...|.+.+.+.+..++..|+.|+.+..+..... -..+++.++..+.+....|...|+.+++.++..-.. .
T Consensus 231 ~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~--~ 308 (510)
T 3ul1_B 231 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE--Q 308 (510)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH--H
T ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHH--H
Confidence 3456677788899999999999999999998666543221 123567788888999999999999999998632100 0
Q ss_pred CcchhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-------chhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESIT-------PLPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 146 d~~~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
... -++ ..+..|+.-..+.+.-+++.|..+|..++.+.. ...+++.|...+.+.+..||..++..|.+++
T Consensus 309 ~~~--i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 309 TQK--VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386 (510)
T ss_dssp HHH--HHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHH--HhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 000 000 011112111235677899999999988865432 2347788888889999999999999999988
Q ss_pred HhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 218 TKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 218 ~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
..-..+.+....-.-.++.+..++...+++++..+=.++..+.....
T Consensus 387 ~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 387 SGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 75443332211112345566778899999999998888777665543
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0007 Score=66.27 Aligned_cols=194 Identities=13% Similarity=0.140 Sum_probs=132.4
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPN-LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~-L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
+..+..++..|.+.|-+.+.+++..|+.|+.+..+..... -..+++.++..+.+.-..|...|+.+++.|... +...
T Consensus 250 ~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~ 327 (529)
T 3tpo_A 250 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQ 327 (529)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHH
T ss_pred hhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHH
Confidence 4456677788899999999999999999998766543221 134667778888898899999999999998632 1000
Q ss_pred CcchhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 146 d~~~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
... -++ ..+..|+.-..+.+.-++..|..+|..++.+-.. ..+++.|...+.+.+..+|..++..|.+++
T Consensus 328 ~~~--i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 328 TQK--VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp HHH--HHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHH--HhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 000 000 1122222222356788999999999988764322 347788888889999999999999999988
Q ss_pred HhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 218 TKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 218 ~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
..-..+.+....-.-+++.+..++...+++++..+-.++..+.....
T Consensus 406 ~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 406 SGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 75433332111112245556678889999999998888877766554
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0044 Score=57.01 Aligned_cols=187 Identities=13% Similarity=0.131 Sum_probs=117.8
Q ss_pred HHHHHh-ccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 70 IPCLIE-GLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMK-NPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 70 l~~~l~-~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
+..++. .|++.+=.-+..|+..|..++..+|+.=...+ ...++.++..++ +....|-++|+-+++.|...... ..+
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~-~~~ 161 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA-GLL 161 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH-HHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH-HHH
Confidence 456677 78888888888888888888876664221111 134555566666 45788999999999999864332 111
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-------chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-------PLPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
...+ ...++.|+.-..+...-++..|-.+|..++..-. ..-+++.|...+.+.++.||..++..|.+++..
T Consensus 162 ~~~~--~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 162 QFLR--LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHH--TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 1100 0123333322234567789999999999887622 224777788888999999999999999999976
Q ss_pred hCchhhhh-----ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKE-----LGLVSLVQVAAGLLN--DRLPEAREAARSMVNSMY 260 (297)
Q Consensus 220 ~g~~~l~~-----~~~~~ll~~~a~~l~--D~~pE~R~~aRk~l~~L~ 260 (297)
+...... ..+..+++-..+.+. +.+.|.++++.+++..+|
T Consensus 240 -~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 240 -FPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp -CHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred -ChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 3222221 124455544455555 334566666555544433
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0018 Score=63.28 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=125.0
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
+..++..|.+.++..+..++..|..|+.+.++.....+ ..++..+...+++....|.++||.+++.|+..-.. ....
T Consensus 295 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~-~~~~- 372 (529)
T 3tpo_A 295 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-QIQQ- 372 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHH-HHHH-
T ss_pred hHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHH-HHHH-
Confidence 45667778899999999999999999876554332211 23556778888999999999999999999853111 0000
Q ss_pred hhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh--------HHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 149 SDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP--------LLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 149 ~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k--------ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
-++ .+++.|+.-..+.+.-++.+|..||..++.+.++.. +++.|...++++++.++..+...|.+++..
T Consensus 373 --v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 373 --VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp --HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred --HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 011 234444443445666789999999999888776542 477788888999999999999999998753
Q ss_pred ---hCch-hh----hh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 220 ---MGLE-GM----KE-LGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 220 ---~g~~-~l----~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
.+.. .+ .+ +|+++ +-.+....+.|+++.|.+++..+
T Consensus 451 ~~~~~~~~~~~~~iee~ggl~~----ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 451 AEKLGETEKLSIMIEECGGLDK----IEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHH----HTGGGGCSSHHHHHHHHHHHHHH
T ss_pred hHhccChHHHHHHHHHCCcHHH----HHHHHcCCCHHHHHHHHHHHHHH
Confidence 2221 11 11 23444 45567788999998877765544
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.016 Score=52.28 Aligned_cols=180 Identities=12% Similarity=0.077 Sum_probs=144.4
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
+..+..+++.|.++|=..+..+|..|..+.+.-|..+. ..+.++.+.++...++--=-|+=.|+.|++.|.... .+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v---pL 108 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV---PM 108 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC---CB
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---CC
Confidence 34677788888999999999999999999998887775 578899999998888888888888888888887432 34
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
++ +.++.+...|..=....+..++++|...|+.+ +-.+ ..+++..|.+-.++||+.+....-..+.++-.+-++..
T Consensus 109 ~~--~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 109 GS--KTFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp CH--HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred CH--HHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 43 46788877776655678999999999999999 4444 45788888888899999999999888888888777555
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMV 256 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l 256 (297)
+ .+.++.-+..+++--+|+.++.|=-++
T Consensus 186 i----~~~I~~eI~elL~~eD~~l~e~aLd~L 213 (265)
T 3b2a_A 186 H----LTLILDEIPSLLQNDNEFIVELALDVL 213 (265)
T ss_dssp C----GGGTTTTHHHHHTCSCHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 456667788888888999998765443
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.012 Score=55.98 Aligned_cols=182 Identities=10% Similarity=0.091 Sum_probs=114.1
Q ss_pred cHHHHHhccCC-cCHHHHHHHHHHHHHHHhhChhhhhHHHH--HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 69 MIPCLIEGLDS-KDWTNVCESLNNARRFALHHSSLLEPNLE--KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 69 ~l~~~l~~L~s-~dW~~~~eaL~~LRrLa~~h~e~l~~~L~--~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
.+..++..|.+ .||..+..++..|+.|+.. ++ ....+. ..++.++..+++.-..|...|+.+++.|+..-.+ ..
T Consensus 60 ~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~ 136 (529)
T 1jdh_A 60 MVSAIVRTMQNTNDVETARCTAGTLHNLSHH-RE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AK 136 (529)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-ch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hH
Confidence 45566666754 5999999999999999863 43 222222 4677888888888889999999999999876332 11
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-----------------------hcC----------------
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVE-----------------------SIT---------------- 186 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~-----------------------~~s---------------- 186 (297)
.... -...++.|+.-..+.+.-++..+..+|..+.. ...
T Consensus 137 ~~i~--~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 214 (529)
T 1jdh_A 137 MAVR--LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp HHHH--HHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HHHH--HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 0000 01223333333333333333333333322211 000
Q ss_pred ----------chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 022417 187 ----------PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMV 256 (297)
Q Consensus 187 ----------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l 256 (297)
....++.|...+.+.++.++..++..|.++...... ..+...+++.+.+++.+.++++|..+-.++
T Consensus 215 ~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 215 VCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp TSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh----hHHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 013456666667777888888888888888764321 112457788889999999999999988777
Q ss_pred HHH
Q 022417 257 NSM 259 (297)
Q Consensus 257 ~~L 259 (297)
..|
T Consensus 291 ~~L 293 (529)
T 1jdh_A 291 SNL 293 (529)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0028 Score=61.82 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=123.2
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
+..++..|.+.++..+..++..|..|+.+.++.....+ ..++..+...+++....|.++||.+++.|+..-.. ....-
T Consensus 276 i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~-~~~~v 354 (510)
T 3ul1_B 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-QIQQV 354 (510)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHH
T ss_pred chhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH-HHHHH
Confidence 45667778899999999999999999875554322211 23455667788899999999999999999742111 00000
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch--------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL--------PLLQKLKTYVKHTNPRIRAKAAISISICVTK- 219 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~--------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~- 219 (297)
. -..+++.|+.-..+.+.-++.+|..||..++.+.++. .+++.|...++++++.++..+...|.++++.
T Consensus 355 ~--~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 355 V--NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp H--HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred H--hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 0 0123444444445667789999999999988877654 2467788888999999999999999998863
Q ss_pred --hCchh-h----hh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 220 --MGLEG-M----KE-LGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 220 --~g~~~-l----~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
.+... + .+ +|+ +.+-.+....+.++++.|..++..+
T Consensus 433 ~~~~~~~~~~~~iee~ggl----~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 433 EKLGETEKLSIMIEECGGL----DKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HTTTCHHHHHHHHHHTTHH----HHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHcCcH----HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 23211 1 11 233 3445567788999988777665443
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.027 Score=53.37 Aligned_cols=184 Identities=10% Similarity=0.050 Sum_probs=124.4
Q ss_pred CCCCCccc--cHHHHHhccCCc--CHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Q 022417 61 KAIPDPES--MIPCLIEGLDSK--DWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNPRSALCKTSIMAASD 135 (297)
Q Consensus 61 ~Pl~~pe~--~l~~~l~~L~s~--dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknLRS~Vsk~A~~tl~d 135 (297)
.||.+++. .++++ ...++. |=.+..+++..+=.+.... +-|.. ....+...+++.+.+-+-.+-|-.-..+..
T Consensus 17 ~p~~~~~k~~v~qe~-r~fn~~~~~~~kc~~~l~kll~l~~~G-~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~ 94 (355)
T 3tjz_B 17 NPFQHLEKSAVLQEA-RVFNETPINPRKCAHILTKILYLINQG-EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKE 94 (355)
T ss_dssp ---CCCCHHHHHHHG-GGTTSSSCCHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHCC-CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 67877776 57763 455443 4444445676665555433 22222 234667789999999999999988888876
Q ss_pred HHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHH
Q 022417 136 IFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 136 Lf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
+... .. . .+ -.+..|.+-..+.|.++|--|=++|..+...---..+.+.+..++.|+||-||++++.+...
T Consensus 95 ~~~~-~~-e------~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~k 165 (355)
T 3tjz_B 95 MSCI-AE-D------VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLH 165 (355)
T ss_dssp HTTT-SS-C------GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred hCCC-HH-H------HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 6544 11 1 23 23344444455689999988888777664443345677777889999999999999999988
Q ss_pred HHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 216 CVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 216 ~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
++.... +- .++++..+..+++|.+|-+-.+|-.++..+.+
T Consensus 166 L~~~~p-e~-----v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 166 LLKCSF-DV-----VKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HTTTCH-HH-----HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HhccCH-HH-----HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 876532 32 34578888889999999999888877776654
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0036 Score=62.76 Aligned_cols=165 Identities=15% Similarity=0.154 Sum_probs=104.9
Q ss_pred hccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHH
Q 022417 75 EGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDN 154 (297)
Q Consensus 75 ~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ 154 (297)
+.+++.|=..+++++..|=.+-....+ +......+++.+.+..-.+-|-+-..+..++. . +++ +-.
T Consensus 41 ~~l~~~~~~~k~~~l~kli~~~~~G~d-----~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~---~---~~e---~~~ 106 (618)
T 1w63_A 41 SSFREEDNTYRCRNVAKLLYMHMLGYP-----AHFGQLECLKLIASQKFTDKRIGYLGAMLLLD---E---RQD---VHL 106 (618)
T ss_dssp HHHTTTCTTTHHHHHHHHHHHHHTTCC-----CGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCC---C---CHH---HHH
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHcCCC-----CcchHHHHHHHHcCCchHHHHHHHHHHHHHhC---C---CcH---HHH
Confidence 344444444555655444433332222 22233455567777777777777776555542 1 222 333
Q ss_pred HHHHHHHH-hccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHH
Q 022417 155 LVLQLLMK-ASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSL 233 (297)
Q Consensus 155 ll~~LL~K-a~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~l 233 (297)
++...|.| ..+.|.+++..|-++|..+...--...+++.|..+++|.|+.||++++.++..+...-. +. .+.+
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~-----v~~~ 180 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-EL-----MEMF 180 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GG-----GGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-HH-----HHHH
Confidence 34444444 45689999998888887775221123457777889999999999999999999998532 32 2356
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 234 VQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 234 l~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
++.+..+++|.+|.++.+|=.++..+
T Consensus 181 ~~~l~~lL~D~d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 181 LPATKNLLNEKNHGVLHTSVVLLTEM 206 (618)
T ss_dssp GGGTTTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHhHHHHHHHHHHHH
Confidence 67777888999999998887666654
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.047 Score=56.24 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=124.0
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC----
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK---- 143 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~---- 143 (297)
.+..++..|++.+...+..|+..|..|+.++++.-.... ..+++.++..+++--..|...|+.++..+.. ++.
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~ 312 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKL 312 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHH
Confidence 456777888899999999999999999987765433222 3567788888887666777888888876652 210
Q ss_pred -CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch------hHHHHHHhhccCCCHHHHHHHHHHHHHH
Q 022417 144 -LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL------PLLQKLKTYVKHTNPRIRAKAAISISIC 216 (297)
Q Consensus 144 -~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~------kll~~L~~~~~hKn~~VR~~aA~~L~~~ 216 (297)
..+. +.++.++ .+|. .. +..-+.+.+..+|..++.+-... .+++.|...+++.++.+++.++..|.++
T Consensus 313 ~i~~~--~~i~~Lv-~lL~-~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 313 IILAS--GGPQALV-NIMR-TY-TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHTT--THHHHHH-HHHT-TC-CCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHc--CCHHHHH-HHHh-cC-CHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 0111 1233333 2332 22 34556677778888777532211 2467888888888999999999999998
Q ss_pred HHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 217 VTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 217 v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+..... ..+...+++.+..++.+.++++|..|-.++..|
T Consensus 388 ~~~~~~----~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 388 SDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp HTTCTT----CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred hccchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 865432 123467888889999999999999888777766
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.013 Score=60.52 Aligned_cols=179 Identities=8% Similarity=0.036 Sum_probs=112.4
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC--CCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK--LLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~--~md 146 (297)
.+..++..|.+.+...+..++..+|.+.. .++. ...++.++..+++-...|-..|+.+++.|+...... .++
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~--~~i~----~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~ 189 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDD--AELA----TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR 189 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHH--HHHH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTT
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhH--HHHH----hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHh
Confidence 45788889988888888888887775522 2221 445666666666777889999999999998532210 111
Q ss_pred cchhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhc------CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 147 STSDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESI------TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~------s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
...++..|+....+ .+..++..|..+|..+...- .....++.|...+++.++.+|..++..|.+++..
T Consensus 190 -----~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 190 -----SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred -----ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 12344444443333 37789999999998865431 1234788888888999999999999999999876
Q ss_pred hCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 220 ~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
-...+ ....-...++.+.+++.+.++++|..+-.++..|
T Consensus 265 ~~~~~-~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 265 QEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp STTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred ChhhH-HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33211 0010123566677788888999988877776654
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.028 Score=56.00 Aligned_cols=185 Identities=11% Similarity=0.076 Sum_probs=122.4
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC--CCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD--KLL 145 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~--~~m 145 (297)
.+..++..|++.+...+..|+..|+.|+.+.++...... ..+++.++..+++-...+-..|+.++..|...-.. ..+
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i 178 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 466778888999999999999999999987644332211 35677888888877677777777788877742100 000
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
-. .+.++.++ .+|. .. +..-+.+.+..+|..+..+-.. ...++.|...+++.++.+|..++..|.++...
T Consensus 179 ~~-~g~v~~Lv-~lL~-~~-~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 179 LA-SGGPQALV-NIMR-TY-TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HH-TTHHHHHH-HHHT-TC-CCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HH-cCChHHHH-HHHH-cC-ChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 00 11233232 3332 11 2344566666676665432111 13577788888888999999999999998764
Q ss_pred hCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 220 ~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
... ......+++.+.+++.+.++++|..+-.++..|-.
T Consensus 255 ~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 255 ATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp CTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred chh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 321 12346788889999999999999999888876643
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.037 Score=55.18 Aligned_cols=146 Identities=15% Similarity=0.089 Sum_probs=101.9
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNP-RSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknL-RS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+..++..|+++|+..+..|+..|..|+.+.+....- ....++..++..+.+- ...+.+.|+.++..|...-.. ..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~--~~ 92 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG--LL 92 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH--HH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh--HH
Confidence 4778888889999999999999999999866432110 1235667777777653 567888888888866532110 00
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
...+ ...+..|+.-..+.+.-++..|-.+|..++..-.. ...++.|...+++.++.++..++.+|.++..
T Consensus 93 ~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 93 AIFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHT--TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHH--cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 0000 12344444444566788999999999999876432 3467888888999999999999888888775
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.096 Score=49.72 Aligned_cols=181 Identities=11% Similarity=0.064 Sum_probs=113.8
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhh---h---------HHH-----------------------------
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLL---E---------PNL----------------------------- 107 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l---~---------~~L----------------------------- 107 (297)
.+..++..|++.+|+.+..+...|+.|+..+++.- . ..|
T Consensus 144 ~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 223 (529)
T 1jdh_A 144 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 223 (529)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHH
Confidence 35566777788888887777777777665433210 0 000
Q ss_pred --HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc
Q 022417 108 --EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI 185 (297)
Q Consensus 108 --~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~ 185 (297)
..+++.+...+++....+.++|+.+++.|.....+ .+. ...+++.|+.-..+++.-+++.|-.+|..++.+-
T Consensus 224 ~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~~----~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 224 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEG----MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp HHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CSC----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh--hHH----HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 12455566666766778889999999988876433 222 3455666665556678889999999999886642
Q ss_pred C-------chhHHHHHHhhccC--CCHHHHHHHHHHHHHHHHhhCch-----hhhhccHHHHHHHHHHhccCCC-HHHHH
Q 022417 186 T-------PLPLLQKLKTYVKH--TNPRIRAKAAISISICVTKMGLE-----GMKELGLVSLVQVAAGLLNDRL-PEARE 250 (297)
Q Consensus 186 s-------~~kll~~L~~~~~h--Kn~~VR~~aA~~L~~~v~~~g~~-----~l~~~~~~~ll~~~a~~l~D~~-pE~R~ 250 (297)
. ....++.|...+.+ .++.+|..++..|.++....+.. .+... ..++.+.+++.+.+ +++|.
T Consensus 298 ~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~---~~i~~L~~lL~~~~~~~v~~ 374 (529)
T 1jdh_A 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH---YGLPVVVKLLHPPSHWPLIK 374 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT---TCHHHHHHTTSTTCCHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHc---CChhHHHHHhccccchHHHH
Confidence 2 12346666655543 34899999999999987543321 12221 22555666777766 58887
Q ss_pred HHHHHHHH
Q 022417 251 AARSMVNS 258 (297)
Q Consensus 251 ~aRk~l~~ 258 (297)
.+=.++..
T Consensus 375 ~a~~~l~n 382 (529)
T 1jdh_A 375 ATVGLIRN 382 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77555443
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.057 Score=54.31 Aligned_cols=139 Identities=12% Similarity=0.077 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhcCch
Q 022417 110 VMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKA-SQDKKFVCEEADRALNTMVESITPL 188 (297)
Q Consensus 110 i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~~s~~ 188 (297)
....+++.+.+..-.+-|.+-.+++.++. -+++ +-.++...|.|- .+.|.+++..|=++|..+...--..
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~------~~~e---~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~ 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVN------SNSE---LIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAE 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCC------CCHH---HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHcc------CCcH---HHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHH
Confidence 34566778888888877777777666552 1222 233444445554 5579999887777776663211122
Q ss_pred hHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 189 PLLQKLKTYV--KHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 189 kll~~L~~~~--~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.+++.+..++ .|.+|.||++++.++..+.+. .++.+ .. +.+++.+.++++|.+|-|+.+|=.++..+..
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~-~p~~~-~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT-SPDLV-PM--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH-CGGGC-CC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh-Chhhc-Cc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 4556666788 999999999999999999984 43433 21 3566777788999999999988887766543
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.2 Score=52.37 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=105.9
Q ss_pred CccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHHHHHHcC
Q 022417 65 DPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK---NPRSALCKTSIMAASDIFSAFG 141 (297)
Q Consensus 65 ~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vk---nLRS~Vsk~A~~tl~dLf~~l~ 141 (297)
+|++-+..-++ .++.|..+.-|...|..|+.+.++.+.+.+-..+..+...-. +.-=..-..|+.++|-+.....
T Consensus 360 dp~e~i~~d~e--~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~ 437 (960)
T 1wa5_C 360 DPIEYIRRDLE--GSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN 437 (960)
T ss_dssp CHHHHHHHHHH--C----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC
T ss_pred CHHHHHHhccC--cccccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 45444443333 356688999999999999998886665444333333333211 1111344578888888875421
Q ss_pred -CC-CCCc--chhhHHHHHHH-HHHHhccc---cHHHHHHHHHHHHHHHHhcCch---hHHHHHHhhccCCCHHHHHHHH
Q 022417 142 -DK-LLDS--TSDALDNLVLQ-LLMKASQD---KKFVCEEADRALNTMVESITPL---PLLQKLKTYVKHTNPRIRAKAA 210 (297)
Q Consensus 142 -~~-~md~--~~~~ld~ll~~-LL~Ka~~s---n~FI~e~A~~AL~~Mv~~~s~~---kll~~L~~~~~hKn~~VR~~aA 210 (297)
.. .+.. ..-.++..+.. ++.-..+. ..++|..|-.++..+...+++. .+++.|..++.+.++.||..+|
T Consensus 438 ~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~ 517 (960)
T 1wa5_C 438 ITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAA 517 (960)
T ss_dssp CBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred cccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 11 1221 00024443322 22222334 8999999999999999887643 5666777888889999999999
Q ss_pred HHHHHHHHhhC----------chhhhhccHHHHHHHHHHhccCC
Q 022417 211 ISISICVTKMG----------LEGMKELGLVSLVQVAAGLLNDR 244 (297)
Q Consensus 211 ~~L~~~v~~~g----------~~~l~~~~~~~ll~~~a~~l~D~ 244 (297)
..|.++++..+ .+.+..+ ++.+++.+..+++..
T Consensus 518 ~Al~~~~~~~~~~~~~~~~~~~~~l~p~-l~~ll~~L~~ll~~~ 560 (960)
T 1wa5_C 518 ITIEKILTIRESNTSPAFIFHKEDISNS-TEILLKNLIALILKH 560 (960)
T ss_dssp HHHHHHTTCBSCSSSCCBSSCGGGTTTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccccccccHHHhhhh-HHHHHHHHHHHHHhc
Confidence 99999988532 1222222 666777776666654
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.17 Score=44.96 Aligned_cols=140 Identities=9% Similarity=0.059 Sum_probs=95.8
Q ss_pred hccCCcCHHHHHHHHHHHHHHHhhChh------hhhHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 75 EGLDSKDWTNVCESLNNARRFALHHSS------LLEPNLEKVMAVVV-KAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 75 ~~L~s~dW~~~~eaL~~LRrLa~~h~e------~l~~~L~~i~~~v~-~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..+.+.+=.....||..+..++..... .+......+++.++ +.+.+.|..+...|+.++.+++...+.
T Consensus 62 k~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~----- 136 (278)
T 4ffb_C 62 QYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS----- 136 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-----
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-----
Confidence 345677888888999999999864322 23344566677665 568999999999999999988865443
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh-----cCchhHHH----HHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVES-----ITPLPLLQ----KLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~-----~s~~kll~----~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
.+.++..++.-..+.|.-++.++-..|..++.. +++...++ .|...+.|.|+.||..+..++..+..
T Consensus 137 ----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 137 ----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp ----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 122232232223456788888888888877765 23344444 44567899999999999999999998
Q ss_pred hhCch
Q 022417 219 KMGLE 223 (297)
Q Consensus 219 ~~g~~ 223 (297)
.+|..
T Consensus 213 ~~G~~ 217 (278)
T 4ffb_C 213 VTGNN 217 (278)
T ss_dssp C----
T ss_pred HhCcc
Confidence 88853
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.086 Score=49.45 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=118.0
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhh-Chh---hhhHHHHHHHHHHHHH-hcCcchHHHHHHHHHHHHHHHHc-CC-
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALH-HSS---LLEPNLEKVMAVVVKA-MKNPRSALCKTSIMAASDIFSAF-GD- 142 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~-h~e---~l~~~L~~i~~~v~~~-vknLRS~Vsk~A~~tl~dLf~~l-~~- 142 (297)
+..++..|++.+=+.+..|...|+-|+.. .++ .+.. ...++.++.. .++-...+.+.|+-++..|.... ++
T Consensus 129 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~--~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk 206 (354)
T 3nmw_A 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 206 (354)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH--CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence 66777888888888999999999999874 232 2221 1234555554 45566788889998988887521 11
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccH----HHHHHHHHHHHHHHHhc--Cc--------hhHHHHHHhhccCCCHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKK----FVCEEADRALNTMVESI--TP--------LPLLQKLKTYVKHTNPRIRAK 208 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~----FI~e~A~~AL~~Mv~~~--s~--------~kll~~L~~~~~hKn~~VR~~ 208 (297)
..+-.. ...++.|+.-....+. -+.+.|..+|..+..++ ++ .-.++.|...+++.+..++..
T Consensus 207 ~~i~~~----~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 207 ADICAV----DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHS----TTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHh----cCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 011100 1233333332222211 47888999998887631 11 125777888888999999999
Q ss_pred HHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 209 AAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 209 aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
++..|.++...- .+......-.-.++.+..++..+++++|+.|-.++..|-.
T Consensus 283 A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 283 ACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 999999997421 1111111112356677788899999999998888877655
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.063 Score=56.03 Aligned_cols=188 Identities=14% Similarity=0.154 Sum_probs=123.8
Q ss_pred cHHHHHhccCCc-CHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSK-DWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~-dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+.-++..|.++ +=..+++|+..|+.|+.+.++.-...+. ..++.+...+.+-...|-+.|+.+++.|... +....
T Consensus 581 aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~ 658 (810)
T 3now_A 581 VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIK 658 (810)
T ss_dssp THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHH
T ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHH
Confidence 566777777755 3355689999999999865443222121 2456666667777788999999999998742 21111
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc-------Cc-hhHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESI-------TP-LPLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~-------s~-~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
...+. ...+..|+.=....+.=++++|..||..+.... -. ...++.|...+.+.+..+|..++..+.+++.
T Consensus 659 ~~v~~-~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 659 MFEGN-NDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHSS-SSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhc-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 10000 023343333334566779999999998887631 11 4577788888899999999999999999987
Q ss_pred hhCchh---hhhccHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHHh
Q 022417 219 KMGLEG---MKELGLVSLVQVAAGLLND---RLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 219 ~~g~~~---l~~~~~~~ll~~~a~~l~D---~~pE~R~~aRk~l~~L~~~~ 263 (297)
. +.+. +.+. -.++.+..++.+ .++++++.|..++..+-...
T Consensus 738 ~-s~e~~~~l~e~---G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 738 A-GEEIAKKLFET---DIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp T-CHHHHHHHHTS---THHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHC---CCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 2 2221 2222 245555666654 48999999999998876544
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.66 Score=41.83 Aligned_cols=184 Identities=14% Similarity=0.180 Sum_probs=135.3
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.-+..++.-++++|=...+.|+..+++|...-| +-...+..+...+...+++.+--+.=+|...+|-+ + ...+
T Consensus 75 ~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp-L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----k--v~~~ 147 (265)
T 3b2a_A 75 RHLDVFINALSQENEKVTIKALRALGYLVKDVP-MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL----Q--PLED 147 (265)
T ss_dssp HHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----C--BSCC
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----C--cccc
Confidence 346677778889999999999999999987443 22356788888999999988888887877777766 2 2222
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC----chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT----PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s----~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
. ..+-..+.-|+ .+.|.-+...|=++|-.|..+-. -..++.-+..-++|.++.++..+--.+..++.+-=.+
T Consensus 148 ~-~~V~~~l~sLl---~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~ 223 (265)
T 3b2a_A 148 S-KLVRTYINELV---VSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE 223 (265)
T ss_dssp C-HHHHHHHHHHH---TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS
T ss_pred h-HHHHHHHHHHH---hCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH
Confidence 1 12555666665 68889999999999999977664 2345555566789999999998877776666541111
Q ss_pred hhhhccHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHh
Q 022417 224 GMKELGLVSLVQVAAGLL-NDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 224 ~l~~~~~~~ll~~~a~~l-~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.+. -++.+++..+..+. -.|.|+.|.-||+..-.+..+.
T Consensus 224 ~~~-~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~~ 263 (265)
T 3b2a_A 224 NVK-IELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSVI 263 (265)
T ss_dssp CCH-HHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHC
T ss_pred hHH-HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhh
Confidence 111 13678888888888 8999999999999988777654
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.038 Score=53.05 Aligned_cols=184 Identities=13% Similarity=0.090 Sum_probs=114.0
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---cCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSA---FGDK 143 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~---l~~~ 143 (297)
..+..++..|++.|+..++.|...|+.|+.++++.-.. .-...++.++..+++....+.+.|+.++..|... .+.
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~- 80 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL- 80 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH-
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH-
Confidence 45778899999999999999999999999766542211 1134577888888888889999999999999852 111
Q ss_pred CCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh------HHHHHHhhc--------cC--------C
Q 022417 144 LLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP------LLQKLKTYV--------KH--------T 201 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k------ll~~L~~~~--------~h--------K 201 (297)
.+- +...++.++ .||.+ +.+.-+++.|..||..+..+ ...+ .++.|...+ ++ .
T Consensus 81 ~i~-~~G~i~~Lv-~lL~~--~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 81 ETR-RQNGIREAV-SLLRR--TGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHH-HTTCHHHHH-HHHTT--CCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHH-HcCCHHHHH-HHHhh--CCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 000 011232222 22221 34667899999999988876 3322 355554444 11 3
Q ss_pred CHHHHHHHHHHHHHHHHhhCc--hhhhh--ccHHHHHHHHHHhccCC--CHHHHHHHHHHHHH
Q 022417 202 NPRIRAKAAISISICVTKMGL--EGMKE--LGLVSLVQVAAGLLNDR--LPEAREAARSMVNS 258 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~~g~--~~l~~--~~~~~ll~~~a~~l~D~--~pE~R~~aRk~l~~ 258 (297)
.+.|.+.++..|.++... .. ..+.+ ++++.+++.+.....++ +.++.+.+-.++..
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~n 217 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHN 217 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHh
Confidence 466777899889988864 11 11332 33666666666544333 33445555444443
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.026 Score=44.47 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=61.8
Q ss_pred hccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc
Q 022417 163 ASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN 242 (297)
Q Consensus 163 a~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~ 242 (297)
..+.+..++..|-.+|..+ .....++.|...+++.++.||..++..|..+ |. ...++.+..++.
T Consensus 51 L~d~~~~vR~~A~~aL~~~----~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~----~~--------~~a~~~L~~~l~ 114 (131)
T 1te4_A 51 LSNEDWRIRGAAAWIIGNF----QDERAVEPLIKLLEDDSGFVRSGAARSLEQI----GG--------ERVRAAMEKLAE 114 (131)
T ss_dssp GGCSCHHHHHHHHHHHGGG----CSHHHHHHHHHHHHHCCTHHHHHHHHHHHHH----CS--------HHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc--------HHHHHHHHHHHh
Confidence 3467889999999888765 3456788888888999999999998776543 32 345666777889
Q ss_pred CCCHHHHHHHHHHHH
Q 022417 243 DRLPEAREAARSMVN 257 (297)
Q Consensus 243 D~~pE~R~~aRk~l~ 257 (297)
|.++.+|..|..++.
T Consensus 115 d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 115 TGTGFARKVAVNYLE 129 (131)
T ss_dssp SCCTHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999987764
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.13 Score=51.38 Aligned_cols=69 Identities=13% Similarity=0.009 Sum_probs=47.7
Q ss_pred chhHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVK--HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 187 ~~kll~~L~~~~~--hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
|..++..|...++ .-++.||..+...+..+.-+.+. ..+.+.+.+..+.+|.++|+|+-|...+..|..
T Consensus 507 ~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~------~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 507 EDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC------TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 4455555544332 46888888776666666555431 146777788889999999999999987766643
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.1 Score=54.47 Aligned_cols=187 Identities=12% Similarity=0.003 Sum_probs=124.7
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC-CCCc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK-LLDS 147 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~-~md~ 147 (297)
+..++..|++.+=..+..|...|..|+. +++.-...+ +..++.++..+++--..+-++|+.|++.|+..-... .+..
T Consensus 497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~ 575 (810)
T 3now_A 497 TTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSG 575 (810)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcc
Confidence 5566777788888899999999999995 454222111 235667777777766778899999999998653220 0110
Q ss_pred chhhHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 148 TSDALDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
....+.+++|+.=... ++.....+|-.||..+..+-.. ...++.|...+.|.++.||+.++.+|.+++.
T Consensus 576 --~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~- 652 (810)
T 3now_A 576 --QRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM- 652 (810)
T ss_dssp --HHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-
T ss_pred --hhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-
Confidence 0122345555543332 3445556777788766554211 2357777778889999999999999999986
Q ss_pred hCchhhhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 220 MGLEGMKELGL-VSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 220 ~g~~~l~~~~~-~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
+.+....+.. ...++.+..++...+.++|..|=.++..|-.
T Consensus 653 -~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 653 -SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp -SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 3332222211 2467788889999999999999888887765
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.61 Score=40.93 Aligned_cols=176 Identities=19% Similarity=0.264 Sum_probs=119.8
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
+.-++.++..|+++-|..+-.||..+-.++...|++..+.+.+++..+-+. +|+-.-+++.+.||- .-.
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ks----------EaIpltqeIa~a~G~-la~ 99 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS----------EAIPLTQEIAKAFGQ-MAK 99 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC----------CSHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc----------ccCchHHHHHHHHhH-HHH
Confidence 345778899999999999999999999999999999999888877766443 344444555555554 222
Q ss_pred cchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc--hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 147 STSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP--LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~--~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
--++-++.+++.|+.--.-...=++-.-..+|..+...-+. .-++.-+.+-+++||..=|..+ .+.+.-+|..+
T Consensus 100 i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~a----LnFi~alGen~ 175 (253)
T 2db0_A 100 EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTA----LNFIEAMGENS 175 (253)
T ss_dssp HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHH----HHHHHTCCTTT
T ss_pred hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHH----HHHHHHHhccC
Confidence 22456888888887654333344666777888766554332 2455556677789996555433 34456667543
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
. .+ ..-+++-+-.++.|++--+|..|=..+..+
T Consensus 176 ~-~y-v~PfLprL~aLL~D~deiVRaSaVEtL~~l 208 (253)
T 2db0_A 176 F-KY-VNPFLPRIINLLHDGDEIVRASAVEALVHL 208 (253)
T ss_dssp H-HH-HGGGHHHHHGGGGCSSHHHHHHHHHHHHHH
T ss_pred c-cc-cCcchHHHHHHHcCcchhhhHHHHHHHHHH
Confidence 2 22 344566677889999999999887777654
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.24 Score=48.18 Aligned_cols=185 Identities=11% Similarity=0.077 Sum_probs=115.0
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhh-Chh---hhhHHHHHHHHHHHHH-hcCcchHHHHHHHHHHHHHHHHc-CC-
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALH-HSS---LLEPNLEKVMAVVVKA-MKNPRSALCKTSIMAASDIFSAF-GD- 142 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~-h~e---~l~~~L~~i~~~v~~~-vknLRS~Vsk~A~~tl~dLf~~l-~~- 142 (297)
+..++..|.+.|=+.+..|...|+-|+.. .++ .+.. ...++.++.. .++-...+.+.|+.++..|.... .+
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~--~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH--TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH--cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 55666777777777777888888888763 222 1211 1245556664 45556688899999999988632 11
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccH----HHHHHHHHHHHHHHHh--cCc--------hhHHHHHHhhccCCCHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKK----FVCEEADRALNTMVES--ITP--------LPLLQKLKTYVKHTNPRIRAK 208 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~----FI~e~A~~AL~~Mv~~--~s~--------~kll~~L~~~~~hKn~~VR~~ 208 (297)
..+-.. ...++.|..-....+. -+.+.|..+|..+..+ .++ .-.++.|...+++.+..++..
T Consensus 323 ~~I~~~----~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~ 398 (458)
T 3nmz_A 323 ADICAV----DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 398 (458)
T ss_dssp HHHHHS----TTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHH
T ss_pred HHHHHh----cCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHH
Confidence 011000 1223333222222211 4888899999888763 121 124677778888999999999
Q ss_pred HHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 022417 209 AAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 209 aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
++..|.++... +.+......-.-.++.+..++..+++++|+.|-.++..|-.
T Consensus 399 A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 399 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 99999999843 11211111113356677788889999999988888776643
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0073 Score=60.82 Aligned_cols=190 Identities=17% Similarity=0.157 Sum_probs=119.1
Q ss_pred CCCCCCCCCCCCCcccceeccCCCCCCCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHH
Q 022417 36 VNDENKASFPPSADAFIDYIPSENLKAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVV 115 (297)
Q Consensus 36 ~~~~~~~~~~~~~~~~v~y~~~~eL~Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~ 115 (297)
+.|+..+|..+.+-|..-.+ .+++.+-..+..++.++....|+.+-.||.-||=+ .+++.. |..+++.+.
T Consensus 236 VSDqVVAPVRETaAQtLGaL-----~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~-Ld~Vv~aVL 305 (800)
T 3oc3_A 236 VDDRTVAPVRDAAAYLLSRI-----YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVED-KDGLCRKLV 305 (800)
T ss_dssp SSSSCBCHHHHHHHHHHHHH-----TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCC-HHHHHHHHH
T ss_pred ccCeeeeehHHHHHHHHHHH-----HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHH-HHHHHHHHH
Confidence 56788889888776665554 23444456677777788889999999999999977 555544 888888888
Q ss_pred HHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHH---HHHHhccccHHHHHHHHHHHHHHHHh----cCch
Q 022417 116 KAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQ---LLMKASQDKKFVCEEADRALNTMVES----ITPL 188 (297)
Q Consensus 116 ~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~---LL~Ka~~sn~FI~e~A~~AL~~Mv~~----~s~~ 188 (297)
..+.+.-=-|--.|..|+..+. ... .++.++.. +|... ++-..-....-.-|..++.+ +..+
T Consensus 306 ~GL~D~DDDVRAVAAetLiPIA---~p~-------~l~~LL~iLWd~L~~L-DDLSASTgSVMdLLAkL~s~p~~a~~dp 374 (800)
T 3oc3_A 306 SLLSSPDEDIKLLSAELLCHFP---ITD-------SLDLVLEKCWKNIESE-ELISVSKTSNLSLLTKIYRENPELSIPP 374 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHTTSC---CSS-------THHHHHHHHHHHHHTC-CSCCTTHHHHHHHHHHHHHHCTTCCCCS
T ss_pred hhcCCcccHHHHHHHHHhhhhc---chh-------hHHHHHHHHHHHhhhh-cccchhhHHHHHHHHHHHcCCcccccCh
Confidence 8887665555555555555554 110 12222222 22221 11000000111112222221 2334
Q ss_pred hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 189 PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 189 kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
.++|.|.+...|--+.||..+.+.+..++ .. +.+--.-.+.+-+.++|+|+.+.+++.
T Consensus 375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL----~~-------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 375 ERLKDIFPCFTSPVPEVRTSILNMVKNLS----EE-------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGGGTGGGGTCSSHHHHHHHHHHTTTCC----CH-------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH----hh-------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88999999999999999999988776555 11 222223445678899999999998874
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.6 Score=46.80 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=110.2
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAM--KNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~v--knLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
+..+...|.+.+-..+.-||..+-++. .|+ ..+.+++.|.+.+ .+..+-|-|.|+.|+..+|..... .+..
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e----~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~~~ 185 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVG--SRE----MAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LVPM 185 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHC--CHH----HHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GCCC
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccC--CHH----HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hcCc
Confidence 335556777777766666665554442 233 3467778888998 899999999999999999996555 5542
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHH-----------------------------
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQ----------------------------- 192 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~----------------------------- 192 (297)
. .+-+.+..|| .+.+..|...|-.+|..++..-+. .+++.
T Consensus 186 ~--~~~~~l~~lL---~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 186 G--DWTSRVVHLL---NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp C--SCHHHHHHHT---TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred h--hHHHHHHHHh---CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 1 1233333443 467778888888887777654311 01111
Q ss_pred ---HHHhhccCCCHHHHHHHHHHHHHHHHhhC-ch------------hh-hh------------ccHHHHHHHHHHhccC
Q 022417 193 ---KLKTYVKHTNPRIRAKAAISISICVTKMG-LE------------GM-KE------------LGLVSLVQVAAGLLND 243 (297)
Q Consensus 193 ---~L~~~~~hKn~~VR~~aA~~L~~~v~~~g-~~------------~l-~~------------~~~~~ll~~~a~~l~D 243 (297)
.|..+...-++..+...-.+|..++.... .. .+ .+ .-+...+..+.+|+..
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~ 340 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQH 340 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 11122222245665555555555553320 00 00 00 0145677888899999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 022417 244 RLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 244 ~~pE~R~~aRk~l~~L~~~ 262 (297)
.++++|+.|=..+..+-..
T Consensus 341 ~~~niry~aL~~l~~l~~~ 359 (621)
T 2vgl_A 341 RETNLRYLALESMCTLASS 359 (621)
T ss_dssp SCHHHHHHHHHHHHHHTTC
T ss_pred CCcchHHHHHHHHHHHHhc
Confidence 9999999999888777543
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=95.35 E-value=0.49 Score=48.88 Aligned_cols=131 Identities=9% Similarity=0.105 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC--c---hhHHHHHHhhcc
Q 022417 125 LCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT--P---LPLLQKLKTYVK 199 (297)
Q Consensus 125 Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s--~---~kll~~L~~~~~ 199 (297)
.--.||.++|-+...+.. ..++ .++.++. .|....+++..|+..+-.++..+...+. + ..+++.|..+++
T Consensus 465 ~~eaal~al~~i~~~~~~-~~~~---~l~~l~~-~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~ 539 (963)
T 2x19_B 465 HTEALLYGFQSIAETIDV-NYSD---VVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALG 539 (963)
T ss_dssp HHHHHHHHHHHHTTSCCS-SCCS---HHHHHHH-HGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcCc-hhhH---HHHHHHH-HHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhC
Confidence 445578888887777665 4443 3666665 3334455678899999999998877653 2 356777777776
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhc
Q 022417 200 HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND--RLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 200 hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D--~~pE~R~~aRk~l~~L~~~~~ 264 (297)
+ +.|+..++..|..+++..+ ..+..+ .+.+++.+..++.. -..+.|...-.++..+-.+.+
T Consensus 540 ~--~~V~~~A~~al~~l~~~~~-~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 540 N--PELSVSSVSTLKKICRECK-YDLPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp C--GGGHHHHHHHHHHHHHHTG-GGCTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred C--chHHHHHHHHHHHHHHHHH-HHHHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 5 8899999999999998765 233333 67777777776663 457788777777776655443
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.21 Score=40.83 Aligned_cols=94 Identities=16% Similarity=0.266 Sum_probs=70.1
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
+..++.+|...++|+|+.+...+..+|..|++.-|..--...+-..+++.+.+.+...+++||+-...++......|...
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45678888888899999999999999999999988654333333445555555666678999999999999999999866
Q ss_pred hhh--hHHHHHHHHHh
Q 022417 267 EEH--KQEAWQSFCQS 280 (297)
Q Consensus 267 ~~~--~~~~~~~~~~~ 280 (297)
.+- -.+.|+.+-.+
T Consensus 120 ~~l~~i~~~Y~~Lk~~ 135 (140)
T 3ldz_A 120 PQLSLISAMIKNLKEQ 135 (140)
T ss_dssp GGGTHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHc
Confidence 431 23666665443
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.06 E-value=1.1 Score=39.48 Aligned_cols=178 Identities=13% Similarity=0.075 Sum_probs=113.7
Q ss_pred ccccHHHHHhccCCcCH--HHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-cC
Q 022417 66 PESMIPCLIEGLDSKDW--TNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSA-FG 141 (297)
Q Consensus 66 pe~~l~~~l~~L~s~dW--~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~-l~ 141 (297)
.+..+..+++.|.+.|. +.++.|...|+.|+..+++.-.... ...++.++..+++-...|-+.|+-++..|... -.
T Consensus 6 ~~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred hhccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 45678899999999999 8889999999999987765322211 23468888889998899999999999999742 00
Q ss_pred CCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh-----HHHHHHh-------hc---------cC
Q 022417 142 DKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP-----LLQKLKT-------YV---------KH 200 (297)
Q Consensus 142 ~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k-----ll~~L~~-------~~---------~h 200 (297)
++..-.+...++.++ .||... ...-+++.|..+|-.+..+....+ .++.|.. |. +.
T Consensus 86 nk~~I~~~GaI~~Lv-~lL~~~--~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 86 NKLEVAELNGVPRLL-QVLKQT--RDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHHHHTTHHHHHH-HHHHHC--CCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHHHHcCCHHHHH-HHHccC--CCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCccccccccccc
Confidence 000000122343333 333322 345588999989988865443322 2344421 21 12
Q ss_pred CCHHHHHHHHHHHHHHHHh--hCchhhhh-cc-HHHHHHHHHHhccCCCH
Q 022417 201 TNPRIRAKAAISISICVTK--MGLEGMKE-LG-LVSLVQVAAGLLNDRLP 246 (297)
Q Consensus 201 Kn~~VR~~aA~~L~~~v~~--~g~~~l~~-~~-~~~ll~~~a~~l~D~~p 246 (297)
.++.|+..++.+|.++.-. -+...+.+ .| ++.++..+..++.++.+
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~ 212 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQP 212 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCT
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccc
Confidence 4779999999999888642 22233443 24 58888888888766544
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=95.06 E-value=0.19 Score=42.19 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=70.4
Q ss_pred CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhc
Q 022417 186 TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND-RLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 186 s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D-~~pE~R~~aRk~l~~L~~~~~ 264 (297)
.+..++.+|..-++|+|+.|...+..+|..|++.-|..-.....-..+++.+.+.+.. .+++||+-...++......|.
T Consensus 49 ~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 49 GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 3557888888889999999999999999999999886543333334455555555544 678999999999999999998
Q ss_pred cchhh--hHHHHHHHHHhc
Q 022417 265 ENEEH--KQEAWQSFCQSN 281 (297)
Q Consensus 265 ~~~~~--~~~~~~~~~~~~ 281 (297)
...+- =.+.|+.+-.+-
T Consensus 129 ~~~~l~~i~~~Y~~Lk~~G 147 (163)
T 1x5b_A 129 KDPQFSLISATIKSMKEEG 147 (163)
T ss_dssp TCSTTHHHHHHHHHHHTTT
T ss_pred CCcccHHHHHHHHHHHHcC
Confidence 65431 236666665443
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.024 Score=53.72 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=56.1
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhh
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDA 151 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ 151 (297)
.+...+.+.+=--+--| ||.|..-..+ ..++.+.+.|.+.+.+-.+.|.|+|+.|+..||..-.. ..
T Consensus 108 sl~kDl~~~N~~iR~lA---LRtL~~I~~~---~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-~v------ 174 (355)
T 3tjz_B 108 SLTKDMTGKEDSYRGPA---VRALCQITDS---TMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-VV------ 174 (355)
T ss_dssp HHHHHHHSSCHHHHHHH---HHHHHHHCCT---TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-HH------
T ss_pred HHHhhcCCCcHhHHHHH---HHHHhcCCCH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-HH------
Confidence 44455555553333333 3444432222 23577888999999999999999999999988744222 22
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Q 022417 152 LDNLVLQLLMKASQDKKFVCEEADRALNTMVE 183 (297)
Q Consensus 152 ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~ 183 (297)
...+..+-.-..++|.++.-.|-.+|..|.+
T Consensus 175 -~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 175 -KRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp -HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 2222222222245666666555555555543
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=94.79 E-value=0.62 Score=48.13 Aligned_cols=178 Identities=8% Similarity=0.095 Sum_probs=111.6
Q ss_pred CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 78 DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 78 ~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
++.+|..+-.++-.+..++..-.+...+.+..++..+. .+.+....|-..+|.++|-+...++. . .+.+..++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~-~----~~~l~~vl~ 532 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLAD-H----PVMINSVLP 532 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHH-C----HHHHTTTHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHh-C----HHHHHHHHH
Confidence 56799999999999999987654433455666666433 33333456889999999999887765 2 124666666
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccC--CCHHHHHHHHHHHHHHHHhhCchhhhhcc
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKH--TNPRIRAKAAISISICVTKMGLEGMKELG 229 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~h--Kn~~VR~~aA~~L~~~v~~~g~~~l~~~~ 229 (297)
.|+.-..+ .-|+..|..|+..+++.|.. ..++..|.....+ -+...|..+...+..++..++.+....+
T Consensus 533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~- 609 (963)
T 2x19_B 533 LVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN- 609 (963)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH-
T ss_pred HHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH-
Confidence 66654433 56899999999999987643 2344444443332 3567888888888888877763333232
Q ss_pred HHHHHHHHHHh----c-cCCCHHHHHHHHHH---HHHHHHHhc
Q 022417 230 LVSLVQVAAGL----L-NDRLPEAREAARSM---VNSMYNAFT 264 (297)
Q Consensus 230 ~~~ll~~~a~~----l-~D~~pE~R~~aRk~---l~~L~~~~~ 264 (297)
++.+++.+... + ++.+++.|...... +..+.+.++
T Consensus 610 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 610 LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333332222 2 23478887754444 444455544
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.37 Score=39.95 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=70.9
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND------RLPEAREAARSMVNSMY 260 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D------~~pE~R~~aRk~l~~L~ 260 (297)
|..++..|..-++|+|+.+...+..+|..|++.-|..-.....-..+++.+.+.+.+ .+++||+-...++....
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 556888888888999999999999999999999996544445556777777788765 47899999999999999
Q ss_pred HHhccchhhhHHHHHHHH
Q 022417 261 NAFTENEEHKQEAWQSFC 278 (297)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~ 278 (297)
..|.... .=.+.|+.+-
T Consensus 126 ~~f~~~p-~i~~~Y~~Lk 142 (149)
T 3g2s_A 126 VGLPEEV-KIAEAYQMLK 142 (149)
T ss_dssp HHCTTCH-HHHHHHHHHH
T ss_pred HHhCCCc-hHHHHHHHHH
Confidence 9997543 2234555443
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=94.47 E-value=0.35 Score=51.61 Aligned_cols=140 Identities=8% Similarity=0.057 Sum_probs=106.2
Q ss_pred cCHHHHHHHHHHHHHHHhhC-hhhhhHHHHHHHHHHHHHhc-----CcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHH
Q 022417 80 KDWTNVCESLNNARRFALHH-SSLLEPNLEKVMAVVVKAMK-----NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALD 153 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h-~e~l~~~L~~i~~~v~~~vk-----nLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld 153 (297)
.+|..+--++--++.++..- ++...+.++++++.+...+. +.+..|..++|-++|...+.+.. +++.+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~-----~~~~L~ 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA-----HWNFLR 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH-----CHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc-----cHHHHH
Confidence 68999999999999998643 33467788899998888776 36666777999999999988865 134688
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch--------------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 154 NLVLQLLMKASQDKKFVCEEADRALNTMVESITPL--------------PLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 154 ~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~--------------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
.++..|+....+++.-|++.|..|+..+++.|... .++..+......-.+.-+..+...+..++..
T Consensus 540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 88888888888888889999999999999998632 2233333333445666667778888888888
Q ss_pred hCchh
Q 022417 220 MGLEG 224 (297)
Q Consensus 220 ~g~~~ 224 (297)
.+...
T Consensus 620 ~~~~~ 624 (1023)
T 4hat_C 620 ERSVA 624 (1023)
T ss_dssp CCSHH
T ss_pred CCCHh
Confidence 77543
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.44 Score=39.38 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=71.8
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND------RLPEAREAARSMVNSMY 260 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D------~~pE~R~~aRk~l~~L~ 260 (297)
|..++.+|..-++|+|+.+...+..+|..|++.-|..-....+-..+++.+.+.+.+ .+++||+-...++....
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 556777887788999999999999999999999996544455557788888888875 37899999999999999
Q ss_pred HHhccchhhhHHHHHHHHHh
Q 022417 261 NAFTENEEHKQEAWQSFCQS 280 (297)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~ 280 (297)
..|..... =.+.|+.+-.+
T Consensus 116 ~~f~~~p~-i~~~y~~Lk~~ 134 (148)
T 1mhq_A 116 VWFPEDIK-IRDAYQMLKKQ 134 (148)
T ss_dssp HHCTTCHH-HHHHHHHHHHT
T ss_pred HHcCCCch-HHHHHHHHHHc
Confidence 99875432 33555554443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.35 E-value=0.81 Score=48.55 Aligned_cols=94 Identities=23% Similarity=0.236 Sum_probs=60.8
Q ss_pred HHHHHHHhc-cccHHHHHHHHHHHHHHHHhcCchhHHHHHHh-hccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHH
Q 022417 156 VLQLLMKAS-QDKKFVCEEADRALNTMVESITPLPLLQKLKT-YVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSL 233 (297)
Q Consensus 156 l~~LL~Ka~-~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~-~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~l 233 (297)
+..||+.+. +.+.+||..|-.+|..+.-. .+ ..++.+.. ...+.++.||+.++..|-.+.. +.+...+
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g-~~-e~v~rlv~~L~~~~d~~VR~gAalALGli~a--------Gn~~~~a 648 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLR-DY-TTVPRIVQLLSKSHNAHVRCGTAFALGIACA--------GKGLQSA 648 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSS-SC-SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS--------SSCCHHH
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc--------CCCcHHH
Confidence 344555554 35678888877777654222 23 23444443 4557788888887765544332 1234678
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 234 VQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 234 l~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
++++..+..|.+.+||..|-.++-.+
T Consensus 649 id~L~~L~~D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 649 IDVLDPLTKDPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 88999999999999999988776643
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.76 Score=42.92 Aligned_cols=170 Identities=11% Similarity=-0.010 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHhhChhhh--hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCC-CC--cchhhHHHHHH
Q 022417 83 TNVCESLNNARRFALHHSSLL--EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKL-LD--STSDALDNLVL 157 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~e~l--~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~-md--~~~~~ld~ll~ 157 (297)
.-+..|...|+.|+....+.- ......+++.++..+++....|...|+-++..|... .+.. -+ .+...++.++.
T Consensus 99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~~k~~i~~~G~Ip~Lv~ 177 (354)
T 3nmw_A 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVNSKKTLREVGSVKALME 177 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhcc-CCHHHHHHHHHCCCHHHHHH
Confidence 457788888888886554221 112355688888999988889999999999998642 1100 00 00122333332
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCc--------hhHHHHHHhhccCCCH----HHHHHHHHHHHHHHHhh--Cch
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITP--------LPLLQKLKTYVKHTNP----RIRAKAAISISICVTKM--GLE 223 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~--------~kll~~L~~~~~hKn~----~VR~~aA~~L~~~v~~~--g~~ 223 (297)
.| .+ ..+.-+.+.|..||..+..++.. .-.++.|...+.+.+. .|+..++..|.++...+ +.+
T Consensus 178 lL-~~--~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~ 254 (354)
T 3nmw_A 178 CA-LE--VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 254 (354)
T ss_dssp HH-HH--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HH-hc--CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHH
Confidence 22 22 23445677888888888774422 2356667666665544 58888888888776421 111
Q ss_pred h---hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 224 G---MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 224 ~---l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
. +.+ .-.++.+..++.+++.++++.|=.+++.|
T Consensus 255 ~~~~i~~---~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 255 HRQILRE---NNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HHHHHHT---TTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH---cCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 1 222 22466677788899999998887777766
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=94.15 E-value=1.2 Score=46.21 Aligned_cols=133 Identities=12% Similarity=0.140 Sum_probs=91.1
Q ss_pred cCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHH
Q 022417 80 KDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMK--NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVL 157 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vk--nLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~ 157 (297)
.+|..+-.+|..+..++..-++...+.+..++. ++..+. +....|-..||.++|.+...++. ..+ .+..++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~-~~~----~l~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLME-NPA----YIPPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC---------CHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhc-CHH----HHHHHHH
Confidence 799999999999999987555444566777777 555555 45778999999999999998886 322 4677777
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhcCch------hHHHHHHhhccC--CCHHHHHHHHHHHHHHHHhhC
Q 022417 158 QLLMKASQDKKFVCEEADRALNTMVESITPL------PLLQKLKTYVKH--TNPRIRAKAAISISICVTKMG 221 (297)
Q Consensus 158 ~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~------kll~~L~~~~~h--Kn~~VR~~aA~~L~~~v~~~g 221 (297)
.|+.-. + .-|+..|..|+..+++.|... .++..|.....+ -....+..+...+..++..++
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 766544 3 558999999999999887421 233334343433 346778888888888887665
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=94.03 E-value=1.6 Score=45.45 Aligned_cols=176 Identities=12% Similarity=0.142 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC----------CCCCCcchh
Q 022417 81 DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG----------DKLLDSTSD 150 (297)
Q Consensus 81 dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~----------~~~md~~~~ 150 (297)
.=--|..++..+-|++.+-+ ...+..++..++..+.+.---|...||.++..++.... +..+.|.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~-- 545 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS-- 545 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT--
T ss_pred CceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhh--
Confidence 44557788888888876522 23577778888888887766688999999999887532 2235554
Q ss_pred hHHHHHHHHHHHhccc-----cHHHHHHHHHHHHHHHHh----cCc--hhHHHHHH----hhc-cCCCHHHHHHHHHHHH
Q 022417 151 ALDNLVLQLLMKASQD-----KKFVCEEADRALNTMVES----ITP--LPLLQKLK----TYV-KHTNPRIRAKAAISIS 214 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~s-----n~FI~e~A~~AL~~Mv~~----~s~--~kll~~L~----~~~-~hKn~~VR~~aA~~L~ 214 (297)
++.++..|+.-.... +....+.+-.||..++.. +.| ..+++.|. ... +..++..+..+..++.
T Consensus 546 -l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~ 624 (960)
T 1wa5_C 546 -TEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIG 624 (960)
T ss_dssp -HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 666666555433221 111223445555555443 333 23444443 222 2357788888888888
Q ss_pred HHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 215 ICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 215 ~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
.++...+++.+..+ .+.+++.+...+.....+.+.++..++..+-...
T Consensus 625 ~l~~~~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 625 AILNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHhcCCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 88887554443333 4566666666666556677888888777666553
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.83 E-value=1.1 Score=46.34 Aligned_cols=195 Identities=9% Similarity=0.101 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHH
Q 022417 81 DWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLL 160 (297)
Q Consensus 81 dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL 160 (297)
+=.-+..++..+-|++.+..+- ...+..++..+...+ + ..|+..||.++..+++.++. .+.+. ++.++..|+
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~-~l~p~---~~~ll~~l~ 590 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQL-QLKPY---ADPLLNACH 590 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHH-HHHHH---HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHH-hcccc---HHHHHHHHH
Confidence 4455677888888887542211 133555555555555 3 46899999999999998887 66664 566665554
Q ss_pred HHhcc--ccHHHHHHHHHHHHHHHHhcCchhHHH-------HH----HhhccCC--CHHHHHHHHHHHHH---HHHhhCc
Q 022417 161 MKASQ--DKKFVCEEADRALNTMVESITPLPLLQ-------KL----KTYVKHT--NPRIRAKAAISISI---CVTKMGL 222 (297)
Q Consensus 161 ~Ka~~--sn~FI~e~A~~AL~~Mv~~~s~~kll~-------~L----~~~~~hK--n~~VR~~aA~~L~~---~v~~~g~ 222 (297)
.-... -..-..+.+-.|+..++..+++....+ -+ ....+.. +..-+.....++.. ++.-++.
T Consensus 591 ~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~ 670 (971)
T 2x1g_F 591 ASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNT 670 (971)
T ss_dssp HHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCC
Confidence 33322 245677777888888887665322222 22 1222222 33344444444433 3333332
Q ss_pred h------------hhhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCCh
Q 022417 223 E------------GMKELGLVSLVQVAAGLLND--RLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQP 284 (297)
Q Consensus 223 ~------------~l~~~~~~~ll~~~a~~l~D--~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (297)
. .+..+ .+.+++.+...+.+ .++++.+.+-.++..+-..|+.+-.+-...+-.++...+..
T Consensus 671 ~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~ 745 (971)
T 2x1g_F 671 DVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQT 745 (971)
T ss_dssp -------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-
T ss_pred CcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhc
Confidence 1 01111 34555555555433 36788888888888877777654322234444555444443
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.38 Score=37.57 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=56.9
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS 149 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~ 149 (297)
+..++..|++.||..+..++..|.++. . .+.+..+...+++.-..|-..|+.+++.+ |. +
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~---~-------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~----~~----~-- 103 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ---D-------ERAVEPLIKLLEDDSGFVRSGAARSLEQI----GG----E-- 103 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC---S-------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH----CS----H--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC---C-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc----H--
Confidence 577888888899999988886665542 1 23455566666777788888999888876 22 1
Q ss_pred hhHHHHHHHHHHHhccccHHHHHHHHHHHH
Q 022417 150 DALDNLVLQLLMKASQDKKFVCEEADRALN 179 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~ 179 (297)
..+..|+.-..+.+.+|+..|..||.
T Consensus 104 ----~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 104 ----RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 12233333234667788888877764
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.68 E-value=2.9 Score=37.77 Aligned_cols=135 Identities=10% Similarity=0.122 Sum_probs=89.7
Q ss_pred CcCHHHHHHHHHHHHHHHhh----ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHH
Q 022417 79 SKDWTNVCESLNNARRFALH----HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDN 154 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~----h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ 154 (297)
+.+=.....+|..|..+... ++.+.......+++.++.-+-+.+-.|=..+-..+..|+..+.. ..
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----------~~ 167 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----------LK 167 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----------HH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----------HH
Confidence 34444445556655555432 22222233466778888888887766644444444445444333 22
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhc--CchhHH---HHHHhhccCCCHHHHHHHHHHHHHHHHhhCch
Q 022417 155 LVLQLLMKASQDKKFVCEEADRALNTMVESI--TPLPLL---QKLKTYVKHTNPRIRAKAAISISICVTKMGLE 223 (297)
Q Consensus 155 ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~--s~~kll---~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~ 223 (297)
++..++.-..+.|.=.+++.-..+..|++.- ++.+.+ +.+.....+++..||..+..++..+....|..
T Consensus 168 v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 168 MTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 3344444334567788899989999998874 467888 99999999999999999999999999999843
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=93.53 E-value=2.6 Score=44.65 Aligned_cols=201 Identities=8% Similarity=0.093 Sum_probs=123.7
Q ss_pred cCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHH
Q 022417 80 KDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQL 159 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~L 159 (297)
++..-+-.+...++|++..-...+.+.+..++..++. +....--...+-.++-|...||+ .+-+ .++.++.+|
T Consensus 713 ~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~---~~~~~e~~~fL~l~~qli~~f~~-~~~~---~l~~ll~~l 785 (980)
T 3ibv_A 713 FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN---SIDMNELVDVLSFISQLIHIYKD-NMME---ITNRMLPTL 785 (980)
T ss_dssp CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH---HCCTTTHHHHHHHHHHHHHHTTT-TSHH---HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHH
Confidence 4556666667788888877777788889999988874 33334455677889999999999 5554 389999999
Q ss_pred HHHhcc-------------ccHHHHHHHHHHHHHHHHh-cCch-----------hHHHHHHhh-ccCCCHHHHHHHHHHH
Q 022417 160 LMKASQ-------------DKKFVCEEADRALNTMVES-ITPL-----------PLLQKLKTY-VKHTNPRIRAKAAISI 213 (297)
Q Consensus 160 L~Ka~~-------------sn~FI~e~A~~AL~~Mv~~-~s~~-----------kll~~L~~~-~~hKn~~VR~~aA~~L 213 (297)
+.|... .+.+++.+-=.-|..++++ +++. .++..|..| ..+..+..++.+..+|
T Consensus 786 ~~~if~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l 865 (980)
T 3ibv_A 786 LMRIFSSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALV 865 (980)
T ss_dssp HHHHHHHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHH
Confidence 988622 1344555555566777774 2321 246666655 4568899999999999
Q ss_pred HHHHHhhCchh----hhhccHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhc---
Q 022417 214 SICVTKMGLEG----MKELGLVSLVQVAAGLLNDRL-----PEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSN--- 281 (297)
Q Consensus 214 ~~~v~~~g~~~----l~~~~~~~ll~~~a~~l~D~~-----pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~--- 281 (297)
.++++.||.+. ..+|-.+ +++.+-....+.+ ..+|...-.+...++..|.+.+ +.|-+|+++.
T Consensus 866 ~~~v~~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g----~~~~~~l~~~~lp 940 (980)
T 3ibv_A 866 SKMVSLWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLG----DIYKSYLVTVYFP 940 (980)
T ss_dssp HHHHHC-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHH----HHHHHHHHHTTTT
T ss_pred HHHHHHHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHhcCC
Confidence 99999997543 3344467 7777777665554 3344444455555566665544 5788888654
Q ss_pred ---CChhhHHHHHH
Q 022417 282 ---LQPIDAQSMVK 292 (297)
Q Consensus 282 ---l~~~~a~~~~~ 292 (297)
+|+..|+...+
T Consensus 941 ~~~~~~~~~~~~~~ 954 (980)
T 3ibv_A 941 TVNFPDVMASEYLQ 954 (980)
T ss_dssp C----CCHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 45555555443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.25 E-value=1.8 Score=41.91 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=98.6
Q ss_pred HHHHHhc-cCCcCHHHHHHHHHHHHHHHhhChhhhhHH--HHHHHHHHHHHhcCcch----HHHHHHHHHHHHHHHHcCC
Q 022417 70 IPCLIEG-LDSKDWTNVCESLNNARRFALHHSSLLEPN--LEKVMAVVVKAMKNPRS----ALCKTSIMAASDIFSAFGD 142 (297)
Q Consensus 70 l~~~l~~-L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~--L~~i~~~v~~~vknLRS----~Vsk~A~~tl~dLf~~l~~ 142 (297)
+..++.. +++.+...+..++..|+.|+.+..+.-... -...++.++..+++... .|.++|+-++..|...+-.
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 4566665 466788888899999999998665432111 13466777777776543 5899999999998863221
Q ss_pred CCCCcchhhH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHH
Q 022417 143 KLLDSTSDAL--DNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISI 213 (297)
Q Consensus 143 ~~md~~~~~l--d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L 213 (297)
.-+.. ..+ ...++.|+.-..+.+.-+.+.|-.||..++..... .-.++.|...+.+++..+|..++..|
T Consensus 368 -~~~~~-~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL 445 (458)
T 3nmz_A 368 -NEDHR-QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445 (458)
T ss_dssp -CHHHH-HHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred -CHHHH-HHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 10110 011 12345555544455666999999999988743221 23567777888899999999999999
Q ss_pred HHHHHh
Q 022417 214 SICVTK 219 (297)
Q Consensus 214 ~~~v~~ 219 (297)
.+++..
T Consensus 446 ~nL~~~ 451 (458)
T 3nmz_A 446 RNLMAN 451 (458)
T ss_dssp HHHHTC
T ss_pred HHHHcC
Confidence 999875
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=92.54 E-value=2.1 Score=45.10 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=55.1
Q ss_pred CcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCc-----chHHHHHHHHHHHHHHHHcCCCCCCcchhhH
Q 022417 79 SKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNP-----RSALCKTSIMAASDIFSAFGDKLLDSTSDAL 152 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknL-----RS~Vsk~A~~tl~dLf~~l~~~~md~~~~~l 152 (297)
+.+|..+-.+|-.+..++....+.... .+..++..+....... .-.|...+|.++|-+...+..+ ++.+
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-----~~~l 538 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-----WNFL 538 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-----HHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-----HHHH
Confidence 468999999999999887543332222 3666666665533322 2223335777777766655541 1234
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHhc
Q 022417 153 DNLVLQLLMKASQDKKFVCEEADRALNTMVESI 185 (297)
Q Consensus 153 d~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~ 185 (297)
..++..|+....+++.-|+..|..|+..+++.|
T Consensus 539 ~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 539 RTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 555444444333334444444444444444443
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=1.1 Score=39.35 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=71.0
Q ss_pred cCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHh
Q 022417 185 ITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN-DRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 185 ~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~-D~~pE~R~~aRk~l~~L~~~~ 263 (297)
..+..++.+|..-++|+|+.+...+..+|..|++.-|..-..+..-..+++.+.+++. ..+++||+-...++.....+|
T Consensus 41 ~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 41 TQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 3466788899888899999999999999999999999654333333333344444443 346899999999999999999
Q ss_pred ccchh--hhHHHHHHHHHhcC
Q 022417 264 TENEE--HKQEAWQSFCQSNL 282 (297)
Q Consensus 264 ~~~~~--~~~~~~~~~~~~~l 282 (297)
..+.+ .-.+.|+.+-.+-+
T Consensus 121 ~~~~~l~~i~~~Y~~Lk~~G~ 141 (226)
T 3zyq_A 121 RNEPKYKVVQDTYQIMKVEGH 141 (226)
T ss_dssp TTCGGGHHHHHHHHHHHHHTC
T ss_pred CCCcchHHHHHHHHHHHhcCC
Confidence 77653 23477777765543
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.65 Score=39.24 Aligned_cols=95 Identities=12% Similarity=0.181 Sum_probs=72.6
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND------RLPEAREAARSMVNSMY 260 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D------~~pE~R~~aRk~l~~L~ 260 (297)
+..++..|..-++|+|+.|...+..+|..|++.-|..--....-..+++.+.+++.. .+++||+-...++....
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456788888888999999999999999999999885443344456666667777753 46899999999999999
Q ss_pred HHhccchhhhHHHHHHHHHhcC
Q 022417 261 NAFTENEEHKQEAWQSFCQSNL 282 (297)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l 282 (297)
..|.... .=.+.|+.+-.+-.
T Consensus 128 ~~f~~~~-~i~~~y~~Lk~~G~ 148 (171)
T 1juq_A 128 MALPEEA-KIKDAYHMLKRQGI 148 (171)
T ss_dssp HHCTTCH-HHHHHHHHHHHTTS
T ss_pred HHcCCCc-HHHHHHHHHHHCCC
Confidence 9997643 23467776666533
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=91.79 E-value=6.4 Score=39.41 Aligned_cols=183 Identities=14% Similarity=0.082 Sum_probs=109.9
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH----cCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSA----FGD 142 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~----l~~ 142 (297)
..+..++..|.+.|-..+++|...|+.|+..+++.-.... ...++.++..+++....|...|+-++..|... .+.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 3688999999999999999999999999987665322211 23568888899999999999999999988731 111
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh-----HHHHHHh-----hcc-------------
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP-----LLQKLKT-----YVK------------- 199 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k-----ll~~L~~-----~~~------------- 199 (297)
.+- ....++.++ .||.. .....+.+.|..||-.+..+-.... .++.|.. +..
T Consensus 128 -~I~-~~GaIp~LV-~LL~s--~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 128 -AIK-NCDGVPALV-RLLRK--ARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp -HHH-HTTHHHHHH-HHHHH--CCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred -HHH-HcCCHHHHH-HHHcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence 110 012233333 23321 1345678888888876654211111 1233322 111
Q ss_pred CCCHHHHHHHHHHHHHHHHhh--Cchhhhh-cc-HHHHHHHHHHhcc--CCCHHHHHHHHHH
Q 022417 200 HTNPRIRAKAAISISICVTKM--GLEGMKE-LG-LVSLVQVAAGLLN--DRLPEAREAARSM 255 (297)
Q Consensus 200 hKn~~VR~~aA~~L~~~v~~~--g~~~l~~-~~-~~~ll~~~a~~l~--D~~pE~R~~aRk~ 255 (297)
.....|+..++.+|.++...- +...+.+ .| .+.|+..+...+. +.+....+.+=-+
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~a 264 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCL 264 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHH
Confidence 124799999999999987521 1122333 23 4677777766543 3333444443333
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.14 E-value=4.4 Score=42.07 Aligned_cols=188 Identities=9% Similarity=0.057 Sum_probs=118.6
Q ss_pred HHHHHhccCCcC-HH--HHHHHHHHHHHHHhh-ChhhhhH--HHHHHHHHHHHHhc-Cc------------chHH-HHHH
Q 022417 70 IPCLIEGLDSKD-WT--NVCESLNNARRFALH-HSSLLEP--NLEKVMAVVVKAMK-NP------------RSAL-CKTS 129 (297)
Q Consensus 70 l~~~l~~L~s~d-W~--~~~eaL~~LRrLa~~-h~e~l~~--~L~~i~~~v~~~vk-nL------------RS~V-sk~A 129 (297)
++.++..|.+.. .+ .+..|...|-+|... +|+.+.+ ...+.++.++..+. ++ ++.+ ..+|
T Consensus 500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feA 579 (778)
T 3opb_A 500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEA 579 (778)
T ss_dssp HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHH
Confidence 455666665553 32 577888888888853 4666532 11267777777776 12 3334 6699
Q ss_pred HHHHHHHHHHcCC--CCCCcchhhHH--HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc--hhH-----------HH
Q 022417 130 IMAASDIFSAFGD--KLLDSTSDALD--NLVLQLLMKASQDKKFVCEEADRALNTMVESITP--LPL-----------LQ 192 (297)
Q Consensus 130 ~~tl~dLf~~l~~--~~md~~~~~ld--~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~--~kl-----------l~ 192 (297)
+++++.|+..=++ ...... -+. ..++.|..=..+++.-|+.+|..++-.|+.+-.. .+. ++
T Consensus 580 L~ALTNLAs~~~n~~E~~r~~--Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~ 657 (778)
T 3opb_A 580 LLALTNLASSETSDGEEVCKH--IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFN 657 (778)
T ss_dssp HHHHHHHHHCCSHHHHHHHHH--HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHH
T ss_pred HHHHHHHhcCCcccchHHHHH--HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHH
Confidence 9999999964211 000000 011 1333333334568899999999999999865332 122 66
Q ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHhhC--chhhhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHH
Q 022417 193 KLKTYVKHTNPRIRAKAAISISICVTKMG--LEGMKELGLVSLVQVAAGLLND--RLPEAREAARSMVNSMYN 261 (297)
Q Consensus 193 ~L~~~~~hKn~~VR~~aA~~L~~~v~~~g--~~~l~~~~~~~ll~~~a~~l~D--~~pE~R~~aRk~l~~L~~ 261 (297)
.|...+...+..+|+.++..|.++..... ...+.+ ....++.+...+.| .++++|..|=.++.-|.+
T Consensus 658 lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~--~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 658 ILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLT--KKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTT--CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH--ccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 77788889999999999998888854322 122333 23455555666666 799999988888877775
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=90.36 E-value=3.4 Score=41.95 Aligned_cols=157 Identities=12% Similarity=0.114 Sum_probs=98.5
Q ss_pred CCCCCccccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH-H
Q 022417 61 KAIPDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFS-A 139 (297)
Q Consensus 61 ~Pl~~pe~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~-~ 139 (297)
.+...|=+--..++..|=+..|+.|-+|-.-||.+.+.|..-.+.. ..... --|+..+.-+.- .
T Consensus 167 ~~~eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~------------~~~N~---DLAvRLLCVLALDR 231 (800)
T 3oc3_A 167 RPIENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ------------IRVDS---KLFSKIYEILVTDK 231 (800)
T ss_dssp -CCCSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC------------CCCCT---THHHHHHHHHHHBC
T ss_pred cCCCCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee------------ccccH---HHHHHHHHHHHhcc
Confidence 6677886666677789999999999999999999999986522211 11111 222222221111 1
Q ss_pred cCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-hHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 140 FGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-PLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 140 l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
||+ -.. |. .-.-|||.+..+|.++ .++++. +++..|..+..+..=.||-..-.-|-.+
T Consensus 232 FGD-YVS------Dq-----------VVAPVRETaAQtLGaL-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-- 290 (800)
T 3oc3_A 232 FND-FVD------DR-----------TVAPVRDAAAYLLSRI-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYL-- 290 (800)
T ss_dssp CBB-CSS------SS-----------CBCHHHHHHHHHHHHH-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHT--
T ss_pred ccc-ccc------Ce-----------eeeehHHHHHHHHHHH-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHH--
Confidence 222 100 01 2355899999999999 888754 5666666666677667775433222222
Q ss_pred hhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 022417 219 KMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNS 258 (297)
Q Consensus 219 ~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~ 258 (297)
.+-+.. ++.+++++..++.|.+-|||..|=.++.-
T Consensus 291 ---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVAAetLiP 325 (800)
T 3oc3_A 291 ---KEFVED--KDGLCRKLVSLLSSPDEDIKLLSAELLCH 325 (800)
T ss_dssp ---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHHHHHHTT
T ss_pred ---HHHHHH--HHHHHHHHHhhcCCcccHHHHHHHHHhhh
Confidence 111112 78999999999999999999998877653
|
| >1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=89.91 E-value=3.2 Score=34.36 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=67.7
Q ss_pred CchhHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHH-HHHhcc---CCCHHHHHHHHHHHHHHH
Q 022417 186 TPLPLLQKLKTYVK-HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQV-AAGLLN---DRLPEAREAARSMVNSMY 260 (297)
Q Consensus 186 s~~kll~~L~~~~~-hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~-~a~~l~---D~~pE~R~~aRk~l~~L~ 260 (297)
.+..++.+|..-++ ++|+.+...+-.+|..|++.-|..--....-..+++- +.+.+. +...+||+-...++....
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 35678888887776 5999999999999999999998654334444556655 556664 334599999999999999
Q ss_pred HHhccchh--hhHHHHHHHHHh
Q 022417 261 NAFTENEE--HKQEAWQSFCQS 280 (297)
Q Consensus 261 ~~~~~~~~--~~~~~~~~~~~~ 280 (297)
..|....+ .=.+.|+.+-.+
T Consensus 130 ~~f~~~p~l~~i~~~Y~~Lk~~ 151 (157)
T 1elk_A 130 DAFRSSPDLTGVVTIYEDLRRK 151 (157)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHHHHc
Confidence 98875442 123566655443
|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
Probab=89.70 E-value=2.8 Score=36.36 Aligned_cols=96 Identities=14% Similarity=0.171 Sum_probs=69.9
Q ss_pred CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhc
Q 022417 186 TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLN-DRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 186 s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~-D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
.+..++.+|..-++|+|+.+...+..+|..|++.-|..--.+.+-..+++.+.+++. ..++++|+-...++.....+|.
T Consensus 39 ~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 466788888888899999999999999999999988543233333334444444443 4578999999999999999987
Q ss_pred cchhh--hHHHHHHHHHhc
Q 022417 265 ENEEH--KQEAWQSFCQSN 281 (297)
Q Consensus 265 ~~~~~--~~~~~~~~~~~~ 281 (297)
...+- -.+.|..+-.+-
T Consensus 119 ~~~~~~~i~~~y~~Lk~~G 137 (220)
T 1dvp_A 119 SSDKYQAIKDTMTILKAKG 137 (220)
T ss_dssp TCSSCCHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHhhcC
Confidence 65432 246777776665
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.42 E-value=10 Score=39.29 Aligned_cols=161 Identities=11% Similarity=0.012 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHhhCh---hhh-hHHHH--HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcC---CCCCCcchhhHH
Q 022417 83 TNVCESLNNARRFALHHS---SLL-EPNLE--KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFG---DKLLDSTSDALD 153 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~---e~l-~~~L~--~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~---~~~md~~~~~ld 153 (297)
..+++||.-|.-||.+.. +-+ ...++ ..++.+...+.+--..|-|+|+.++.-|...-. .+.++.+...-.
T Consensus 574 l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~ 653 (778)
T 3opb_A 574 TDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSL 653 (778)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhh
Confidence 458999999999998652 222 23344 377888888888788999999999999996321 112222100001
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC--------chhHHHHHHhhcc--CCCHHHHHHHHHHHHHHHHhh---
Q 022417 154 NLVLQLLMKASQDKKFVCEEADRALNTMVESIT--------PLPLLQKLKTYVK--HTNPRIRAKAAISISICVTKM--- 220 (297)
Q Consensus 154 ~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s--------~~kll~~L~~~~~--hKn~~VR~~aA~~L~~~v~~~--- 220 (297)
.-+..|+.=...++.=++.+|..||..+..... ..+.+..|..-+. +.+..+|..++.++.++++..
T Consensus 654 ~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~ 733 (778)
T 3opb_A 654 RNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDN 733 (778)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCST
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccC
Confidence 113333333344666778888877765533222 1345666655444 489999999999999999732
Q ss_pred -Cchhhhhc-cHHHHHHHHHHhccC
Q 022417 221 -GLEGMKEL-GLVSLVQVAAGLLND 243 (297)
Q Consensus 221 -g~~~l~~~-~~~~ll~~~a~~l~D 243 (297)
+.+.+..+ +-.++.+++.+.+..
T Consensus 734 ~~~~~~~~~~~~~~l~~~l~~~lk~ 758 (778)
T 3opb_A 734 GTNEVYPLLQENQKLKDALNMSLKR 758 (778)
T ss_dssp TTTSCCHHHHSCHHHHHHHHHHHSS
T ss_pred CChHHHHHHhcChHHHHHHHHHHhC
Confidence 22222222 235666666665543
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=89.38 E-value=11 Score=33.58 Aligned_cols=122 Identities=15% Similarity=0.178 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhcC--chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 152 LDNLVLQLLMKASQ-DKKFVCEEADRALNTMVESIT--PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 152 ld~ll~~LL~Ka~~-sn~FI~e~A~~AL~~Mv~~~s--~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
..+-+..||..|.. ++.--.+.-..+-+.++...+ ...+++.+.+-..+.+..||+-.+.++...+.+ ...
T Consensus 13 ~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~------k~~ 86 (257)
T 3gs3_A 13 ARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV------KVE 86 (257)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH------CGG
T ss_pred HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH------HHH
Confidence 44555677777766 332222222223332333221 245666666766779999999999999888743 122
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----h---hhhHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN----E---EHKQEAWQSFCQ 279 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~----~---~~~~~~~~~~~~ 279 (297)
-..++++++..+++|.+|.+-..+=.+...+|...-+. . +.-.+.|+.+++
T Consensus 87 l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~ 144 (257)
T 3gs3_A 87 LLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSL 144 (257)
T ss_dssp GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 36889999999999999988776666666555443222 1 124578988765
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.30 E-value=8.1 Score=41.02 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=91.1
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhcc
Q 022417 120 NPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVK 199 (297)
Q Consensus 120 nLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~ 199 (297)
+.-.-|-+.|..++|.+. +|... .+..++..|+ ...+..||-.|.-||..+...-+-.+++..|....+
T Consensus 589 d~~d~VRraAViaLGlI~--~g~~e------~v~rlv~~L~---~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 589 DSNDDVRRAAVIALGFVL--LRDYT------TVPRIVQLLS---KSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp CSCHHHHHHHHHHHHHHT--SSSCS------SHHHHTTTGG---GCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhhc--cCCHH------HHHHHHHHHH---hcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 333456688999998663 45521 2445543332 246789999999999998766666789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHH
Q 022417 200 HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND--RLPEAREAARSMVNSMY 260 (297)
Q Consensus 200 hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D--~~pE~R~~aRk~l~~L~ 260 (297)
+.+..||..++.-|..+....... .. .-+..+++.+++.+.| .++.+|..+|-+.-.++
T Consensus 658 D~d~~Vrq~Ai~ALG~Ig~gtnna-~~-~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 658 DPVDFVRQAAMIALSMILIQQTEK-LN-PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp CSSHHHHHHHHHHHHHHSTTCCTT-TC-TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhcCCccc-cc-hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 999999999887776665543321 11 1256777778888877 56889999998877664
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=88.06 E-value=2.8 Score=45.00 Aligned_cols=140 Identities=9% Similarity=0.011 Sum_probs=101.0
Q ss_pred cCHHHHHHHHHHHHHHHhhChh-hhhHHHHHHHHHHHHHhcCcc-----hHHHHHHHHHHHHHHHHcCCCCCCcchhhHH
Q 022417 80 KDWTNVCESLNNARRFALHHSS-LLEPNLEKVMAVVVKAMKNPR-----SALCKTSIMAASDIFSAFGDKLLDSTSDALD 153 (297)
Q Consensus 80 ~dW~~~~eaL~~LRrLa~~h~e-~l~~~L~~i~~~v~~~vknLR-----S~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld 153 (297)
-+|+..-..+-.+|.++..-.+ .-...|.+|+..+.......| --|.-+.|.++|...+-+.. . .+.++
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~-h----~~~L~ 565 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRA-H----WKFLK 565 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHH-C----HHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHh-C----HHHHH
Confidence 3699999999999999864443 335678889988887776664 34444556688888887765 2 34789
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh----------HHHHHH----hhccCCCHHHHHHHHHHHHHHHHh
Q 022417 154 NLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP----------LLQKLK----TYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 154 ~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k----------ll~~L~----~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
.++..|+....++++-|.+.|..|+..+++.|...- .+.-|. ....+-.+.-.......+..++..
T Consensus 566 ~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~ 645 (1073)
T 3gjx_A 566 TVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGA 645 (1073)
T ss_dssp HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 999999988888999999999999999999997531 233332 333444555555666667777777
Q ss_pred hCchh
Q 022417 220 MGLEG 224 (297)
Q Consensus 220 ~g~~~ 224 (297)
.+.+.
T Consensus 646 ~p~~~ 650 (1073)
T 3gjx_A 646 QTDQT 650 (1073)
T ss_dssp CCCHH
T ss_pred CCCcc
Confidence 77543
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=86.81 E-value=6 Score=39.83 Aligned_cols=174 Identities=8% Similarity=0.010 Sum_probs=97.3
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMA-VVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~-~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
.+.-+++.|+|.|...|..|+..|..|+. .++...-.++ .++. .|...+.+.-..|..+|.-++..|+..-|.+..+
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 34457888999999999999999999986 5543333232 3444 4566688899999999999999888765541111
Q ss_pred cc-hhhHHHHHHHHHHHhcc---------------ccHH--------------HHHHHHHHHHHHHHhcCchhHHHHHHh
Q 022417 147 ST-SDALDNLVLQLLMKASQ---------------DKKF--------------VCEEADRALNTMVESITPLPLLQKLKT 196 (297)
Q Consensus 147 ~~-~~~ld~ll~~LL~Ka~~---------------sn~F--------------I~e~A~~AL~~Mv~~~s~~kll~~L~~ 196 (297)
.- ...+-..+..+|.+... ..+. +++..+.++..+... ..++.|..
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~----~~l~~l~~ 189 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK----QTILRLLF 189 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC----HHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc----ccHHHHHH
Confidence 00 00122222333333211 0111 233334444444332 33444433
Q ss_pred h---ccCCCHHHHHHHHHHHHHHHHhhCc--hhhhhccHHHHHHHHHHhccCCCHH
Q 022417 197 Y---VKHTNPRIRAKAAISISICVTKMGL--EGMKELGLVSLVQVAAGLLNDRLPE 247 (297)
Q Consensus 197 ~---~~hKn~~VR~~aA~~L~~~v~~~g~--~~l~~~~~~~ll~~~a~~l~D~~pE 247 (297)
. ...-+..++..++.||..+.+.-.. ..+...+...++..+.....+..+.
T Consensus 190 ~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~ 245 (684)
T 4gmo_A 190 RLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR 245 (684)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH
Confidence 2 2234578999999999998774321 1122223334445555555555554
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=86.33 E-value=11 Score=37.81 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=96.4
Q ss_pred HHHHHhcc-CCcCHHHHHHHHHHHHHHHhhC-h--hhhhHHH--HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC
Q 022417 70 IPCLIEGL-DSKDWTNVCESLNNARRFALHH-S--SLLEPNL--EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK 143 (297)
Q Consensus 70 l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h-~--e~l~~~L--~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~ 143 (297)
+..++..| .+.+...+..|.-.|+.|+... + ..+...+ ...++.|++.+.+.-..|-+.||.+++.|...-.++
T Consensus 310 v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~ 389 (584)
T 3l6x_A 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNK 389 (584)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHH
Confidence 55666677 3567888889999999998532 2 2222223 456888999999988999999999999998653331
Q ss_pred CCCcchhhHHHHHHHHHHHhccc--------cHHHHHHHHHHHHHHHHh-------cCchhHHHHHHhhccCC--CHHHH
Q 022417 144 LLDSTSDALDNLVLQLLMKASQD--------KKFVCEEADRALNTMVES-------ITPLPLLQKLKTYVKHT--NPRIR 206 (297)
Q Consensus 144 ~md~~~~~ld~ll~~LL~Ka~~s--------n~FI~e~A~~AL~~Mv~~-------~s~~kll~~L~~~~~hK--n~~VR 206 (297)
+.- -...++.|+.....+ ..-+...|-.+|..++.. +-....++.|...+.++ ++.++
T Consensus 390 --~~I---~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~ 464 (584)
T 3l6x_A 390 --ELI---GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEV 464 (584)
T ss_dssp --HHH---HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHH
T ss_pred --HHH---HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHH
Confidence 111 124455555444333 245666777777666543 22234677777766655 89999
Q ss_pred HHHHHHHHHHHH
Q 022417 207 AKAAISISICVT 218 (297)
Q Consensus 207 ~~aA~~L~~~v~ 218 (297)
+.++..|.++..
T Consensus 465 k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 465 RAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc
Confidence 999999998874
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=85.42 E-value=4.6 Score=38.35 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=64.6
Q ss_pred cccHHHHHHHHHHHHHHHHhcCchh-------HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc--hhhh-hccHHHHH
Q 022417 165 QDKKFVCEEADRALNTMVESITPLP-------LLQKLKTYVKHTNPRIRAKAAISISICVTKMGL--EGMK-ELGLVSLV 234 (297)
Q Consensus 165 ~sn~FI~e~A~~AL~~Mv~~~s~~k-------ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~--~~l~-~~~~~~ll 234 (297)
+.+..++..|..+|..++.+-.+.+ .++.|...+++.++.++..++..|.++...-.. ..+. .++++.++
T Consensus 13 s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv 92 (457)
T 1xm9_A 13 SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAV 92 (457)
T ss_dssp SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHH
Confidence 3456688888888988875544433 577888888999999999999999998863111 1122 24455555
Q ss_pred HHHHHhcc-CCCHHHHHHHHHHHHHHHH
Q 022417 235 QVAAGLLN-DRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 235 ~~~a~~l~-D~~pE~R~~aRk~l~~L~~ 261 (297)
+. +. .+++++++.+=.+++.|-.
T Consensus 93 ~l----L~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 93 SL----LRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp HH----HTTCCCHHHHHHHHHHHHHHHT
T ss_pred HH----HhhCCCHHHHHHHHHHHHHHhc
Confidence 54 45 6788999888777766543
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=84.94 E-value=34 Score=36.04 Aligned_cols=151 Identities=13% Similarity=0.062 Sum_probs=91.4
Q ss_pred HHHHHHHhhChhhhhHHHHHHHHHHH-HHhc---CcchHHHHHHHHHHHHHHHHcCCCCC-----CcchhhHHHHHHHHH
Q 022417 90 NNARRFALHHSSLLEPNLEKVMAVVV-KAMK---NPRSALCKTSIMAASDIFSAFGDKLL-----DSTSDALDNLVLQLL 160 (297)
Q Consensus 90 ~~LRrLa~~h~e~l~~~L~~i~~~v~-~~vk---nLRS~Vsk~A~~tl~dLf~~l~~~~m-----d~~~~~ld~ll~~LL 160 (297)
..++.++.-+|+.+...+-+.+..++ ..+. +..=...-.|+.+++-+.+.++...+ +.....+-+++..|+
T Consensus 420 ~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll 499 (980)
T 3ibv_A 420 IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT 499 (980)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH
Confidence 44566667777777664444444333 2232 12223344566666666665543111 111123444444443
Q ss_pred HHh--ccccHHHHHHHHHHHHHHHHhcC--c---hhHHHHHHh--hccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHH
Q 022417 161 MKA--SQDKKFVCEEADRALNTMVESIT--P---LPLLQKLKT--YVKHTNPRIRAKAAISISICVTKMGLEGMKELGLV 231 (297)
Q Consensus 161 ~Ka--~~sn~FI~e~A~~AL~~Mv~~~s--~---~kll~~L~~--~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~ 231 (297)
.-. ......|+-.+-.++....++.. + ..++..+.. |..|.|+.||..++..+.++++..+. .+.. -.+
T Consensus 500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~-~L~~-~~~ 577 (980)
T 3ibv_A 500 TSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK-QVVN-YTE 577 (980)
T ss_dssp HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT-TCSS-SHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH-Hhhh-HHH
Confidence 311 14678899888888888887764 3 256666667 88999999999999999999998763 3322 266
Q ss_pred HHHHHHHHhcc
Q 022417 232 SLVQVAAGLLN 242 (297)
Q Consensus 232 ~ll~~~a~~l~ 242 (297)
.+++.+..++.
T Consensus 578 ~il~~l~~lL~ 588 (980)
T 3ibv_A 578 SSLAMLGDLLN 588 (980)
T ss_dssp HHHHHTTGGGC
T ss_pred HHHHHHHHhhc
Confidence 77777777665
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.41 E-value=11 Score=33.17 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc--hhhhh-ccHHHHHHHHHH
Q 022417 170 VCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL--EGMKE-LGLVSLVQVAAG 239 (297)
Q Consensus 170 I~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~--~~l~~-~~~~~ll~~~a~ 239 (297)
+...|..+|..++..-.+. -.+|.|...+++.++.++..++..|.++...-.. ..+.+ ++++.+++.+..
T Consensus 26 ~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~ 105 (233)
T 3tt9_A 26 RISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ 105 (233)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHcc
Confidence 3444545676666443322 3578888888999999999999999999763211 22333 345666555442
Q ss_pred hccCCCHHHHHHHHHHHHHHHH
Q 022417 240 LLNDRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 240 ~l~D~~pE~R~~aRk~l~~L~~ 261 (297)
.+++++++.+-.++|.|-.
T Consensus 106 ---~~~~~~~e~a~~aL~nLS~ 124 (233)
T 3tt9_A 106 ---TRDLETKKQITGLLWNLSS 124 (233)
T ss_dssp ---CCCHHHHHHHHHHHHHHHT
T ss_pred ---CCCHHHHHHHHHHHHHHHc
Confidence 4689999999999999854
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=81.51 E-value=19 Score=38.32 Aligned_cols=167 Identities=11% Similarity=0.085 Sum_probs=103.1
Q ss_pred HHHHHHHHhcC--cchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHH
Q 022417 110 VMAVVVKAMKN--PRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKAS-----QDKKFVCEEADRALNTMV 182 (297)
Q Consensus 110 i~~~v~~~vkn--LRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~-----~sn~FI~e~A~~AL~~Mv 182 (297)
+...+...+.+ .-=..--+||.++|-+.........+ ..+..+++.|+.-.. +.+.-++..+-.++....
T Consensus 452 ~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~---~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~ 528 (1023)
T 4hat_C 452 MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEK---RFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYP 528 (1023)
T ss_dssp HHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHH---HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHH---HHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHH
Confidence 33444444443 22333445678888776543331112 235555555544222 234445666667777666
Q ss_pred HhcC--c---hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhh------hccHHHHHHHHHHhccCCCHHHHHH
Q 022417 183 ESIT--P---LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK------ELGLVSLVQVAAGLLNDRLPEAREA 251 (297)
Q Consensus 183 ~~~s--~---~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~------~~~~~~ll~~~a~~l~D~~pE~R~~ 251 (297)
..+. + ..++..|..+....++.|...+|..+..+++.-+..-.. ..-.+.+++.......+-.++.+..
T Consensus 529 ~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~ 608 (1023)
T 4hat_C 529 RFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHT 608 (1023)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 6643 2 246666677888889999999999999999986632211 1115777777788777888888887
Q ss_pred HHHHHHHHHHHhccchh----------hhHHHHHHHHH
Q 022417 252 ARSMVNSMYNAFTENEE----------HKQEAWQSFCQ 279 (297)
Q Consensus 252 aRk~l~~L~~~~~~~~~----------~~~~~~~~~~~ 279 (297)
.-.++..+-++.+...+ .-.+.|+++++
T Consensus 609 lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~ 646 (1023)
T 4hat_C 609 FYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVE 646 (1023)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 77777777776664432 23488999886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 297 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 5e-05 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 7e-05 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 5e-05
Identities = 31/196 (15%), Positives = 67/196 (34%), Gaps = 14/196 (7%)
Query: 64 PDPESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRS 123
+ ++E S E + +A +AL + NL + + V++ + +
Sbjct: 849 SGQLELKSVILEAFSSPS-----EEVKSAASYALGS--ISVGNLPEYLPFVLQEITSQPK 901
Query: 124 ALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVE 183
+ + +I S+ L + + L+L+ ++ L +
Sbjct: 902 RQ-YLLLHSLKEIISSASVVGLKPYVENIWALLLKHC---ECAEEGTRNVVAECLGKLT- 956
Query: 184 SITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND 243
I P LL +LK Y+ + R+ ++ ++ + + L L + + L D
Sbjct: 957 LIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP-QPIDPL-LKNCIGDFLKTLED 1014
Query: 244 RLPEAREAARSMVNSM 259
R A NS
Sbjct: 1015 PDLNVRRVALVTFNSA 1030
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 7e-05
Identities = 34/173 (19%), Positives = 55/173 (31%), Gaps = 17/173 (9%)
Query: 111 MAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFV 170
+AV++ ++N L SI S I A G + T L L L D+ V
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGV---ERTRSEL----LPFLTDTIYDEDEV 64
Query: 171 CEEADRALNTMVESI----TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMK 226
L T + LL L++ +R KA S+ + ++
Sbjct: 65 LLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLE 124
Query: 227 ELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQ 279
V + L +R +A + + Y + K E Q F
Sbjct: 125 AH----FVPLVKRLAGGDWFTSRTSACGLFSVCYPRV--SSAVKAELRQYFRN 171
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 297 | |||
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.05 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.58 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.54 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.28 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.08 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 97.97 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.88 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.85 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.77 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.73 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.6 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.55 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.47 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.35 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.34 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.34 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.3 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.3 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.15 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 96.99 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 96.82 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 96.46 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 96.05 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 95.74 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 95.51 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 95.49 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 94.99 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 93.42 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 93.34 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 93.04 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 91.87 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 91.84 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 91.31 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 88.72 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 86.53 | |
| d1elka_ | 153 | Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | 83.06 |
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=3.9e-09 Score=100.49 Aligned_cols=177 Identities=11% Similarity=0.135 Sum_probs=139.7
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhh-ChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALH-HSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~-h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
+..+...+.+.+|..+..++..+..++.+ .++.+.+ .+.+.+...+.+.-..|-..|+.+++.|+..+|. ..
T Consensus 404 l~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~-~~--- 476 (588)
T d1b3ua_ 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK-EW--- 476 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCH---HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-HH---
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHH---HHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCc-HH---
Confidence 33455666899999999999999999864 3444443 3445566778888888999999999999999998 21
Q ss_pred hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc----hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 149 SDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP----LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~----~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
....+++.++.-..+.+..+|..+-.++..+...++. ..+++.|...+++..|.||..++..|..+....+...
T Consensus 477 --~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~ 554 (588)
T d1b3ua_ 477 --AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554 (588)
T ss_dssp --HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH
T ss_pred --HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh
Confidence 2345566665555667888899999999999887764 4688889999999999999999999999888776433
Q ss_pred hhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 225 MKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 225 l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
+ ...+.+.+.++.+|.++|||++|.+++..|
T Consensus 555 ~----~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 555 L----QSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp H----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred H----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 2 356778888899999999999999998764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=2.6e-06 Score=80.49 Aligned_cols=182 Identities=12% Similarity=0.092 Sum_probs=136.7
Q ss_pred HHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchh
Q 022417 71 PCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSD 150 (297)
Q Consensus 71 ~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~ 150 (297)
..+...+.+++++.+..++..+..+...-.. ......+++.+...+++....+-..++.+++.+...+|...+.+
T Consensus 366 p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~--- 440 (588)
T d1b3ua_ 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGI--RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE--- 440 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCH---
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--hhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHH---
Confidence 3445566777877777777766666543211 12245667778888888888899999999999999999844432
Q ss_pred hHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHhcCch----hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhh
Q 022417 151 ALDNLVLQLLMKA-SQDKKFVCEEADRALNTMVESITPL----PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGM 225 (297)
Q Consensus 151 ~ld~ll~~LL~Ka-~~sn~FI~e~A~~AL~~Mv~~~s~~----kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l 225 (297)
.+..++.+. .+.+.-||+.|..+|..+++.+.+. .+++.|....++++..+|..++.++..+.+..+.+..
T Consensus 441 ----~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~ 516 (588)
T d1b3ua_ 441 ----KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516 (588)
T ss_dssp ----HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHH
Confidence 223333333 4678889999999999999998763 4778888888999999999999988888887664322
Q ss_pred hhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 226 KELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 226 ~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
.+.+++.+.+++.|..|.||..+-+++..+...+..
T Consensus 517 ----~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~ 552 (588)
T d1b3ua_ 517 ----TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp ----HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred ----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 467899999999999999999988888877665543
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=6.6e-06 Score=82.09 Aligned_cols=210 Identities=11% Similarity=0.162 Sum_probs=164.6
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS 149 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~ 149 (297)
+..++..+.+.++..+-.|+..+-.|+.+.+..+.+.+..++..+.+.+++--..|+.+|+.++|+|...+|. .+.|.
T Consensus 667 ~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~-~~~py- 744 (888)
T d1qbkb_ 667 LTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-EMQPY- 744 (888)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGG-GGGGG-
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH-Hhhhh-
Confidence 3345566678899999999999999999999999999999999999999998899999999999999999998 88886
Q ss_pred hhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccC-CCHHHHHHHHHHHHHHHHhh
Q 022417 150 DALDNLVLQLLMKASQ--DKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKH-TNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~~--sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~h-Kn~~VR~~aA~~L~~~v~~~ 220 (297)
++.++..|+....+ .++=|.+.+-.||..|...++. ..+++.+...+.+ ++..-+..+...+..++..
T Consensus 745 --~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~- 821 (888)
T d1qbkb_ 745 --IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV- 821 (888)
T ss_dssp --SHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHH-
T ss_pred --HHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH-
Confidence 66677666665544 4566889899999988776542 2455656655543 5667788888888888875
Q ss_pred CchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcCChhhHHHHHHh
Q 022417 221 GLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENEEHKQEAWQSFCQSNLQPIDAQSMVKI 293 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~ 293 (297)
+++.+.. .+..+..+++...+ ..+|++....+++..+.+.++ .+.|++|. +.|||...+.+-.+
T Consensus 822 ~p~~~~~-~l~~~~~~i~~~~~-~~~~~~~~~~~~l~~~~~~~~------~~~w~~~~-~~~~~~~~~~l~~~ 885 (888)
T d1qbkb_ 822 NPSGVIQ-DFIFFCDAVASWIN-PKDDLRDMFCKILHGFKNQVG------DENWRRFS-DQFPLPLKERLAAF 885 (888)
T ss_dssp CGGGTGG-GHHHHHHHHTTCSS-CCHHHHHHHHHHHHHHHHHHC------HHHHHHHH-HSSCHHHHHHHHHH
T ss_pred CcHHHHH-HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHcC------cHhHHHHH-HcCCHHHHHHHHHh
Confidence 4344443 36788888877554 469999999999999998886 36799987 57999988877543
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=1.8e-05 Score=70.37 Aligned_cols=195 Identities=17% Similarity=0.161 Sum_probs=136.6
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHH-HHHHhcCcchHHHHHHHHHHHHHHHHcCC--------
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAV-VVKAMKNPRSALCKTSIMAASDIFSAFGD-------- 142 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~-v~~~vknLRS~Vsk~A~~tl~dLf~~l~~-------- 142 (297)
.+...+.+.||+.+..++..+..++.++++.+.+.+..++.. +....++-.-.+.+.|+..+..++.....
T Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~ 299 (458)
T d1ibrb_ 220 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 299 (458)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 444556888999999999999999999999888776665543 34556666777888899888877654210
Q ss_pred -------CCCCcc--hhhHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhccCCCH
Q 022417 143 -------KLLDST--SDALDNLVLQLLMKAS-------QDKKFVCEEADRALNTMVESITP---LPLLQKLKTYVKHTNP 203 (297)
Q Consensus 143 -------~~md~~--~~~ld~ll~~LL~Ka~-------~sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~hKn~ 203 (297)
..+... ...++.+++.+..-.. ++..-++..+..++..++...+. ..+++.+..++++.++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~ 379 (458)
T d1ibrb_ 300 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW 379 (458)
T ss_dssp TCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCH
Confidence 001111 1123333333333221 12223788899999999888763 3466666788899999
Q ss_pred HHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccch
Q 022417 204 RIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTENE 267 (297)
Q Consensus 204 ~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~~ 267 (297)
.+|..+...|..+++..+...+..+ +..+++.+..+++|.+|.+|..|-.++..+-+.+++..
T Consensus 380 ~~r~aal~~l~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~ 442 (458)
T d1ibrb_ 380 RYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA 442 (458)
T ss_dssp HHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence 9999888877777665443333333 68899999999999999999999999988888776543
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.6e-05 Score=80.83 Aligned_cols=187 Identities=14% Similarity=0.144 Sum_probs=148.6
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhCh-hhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHS-SLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~-e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.+..+++.+.|.|+.-|+-|++.|........ ..-.....+++..+.+.+.|.-..|-..|+.|++.|...++.
T Consensus 4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~----- 78 (1207)
T d1u6gc_ 4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE----- 78 (1207)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-----
T ss_pred hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH-----
Confidence 46789999999999999999999987764221 111345788999999999999999999999999999876554
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------------hhHHHHHHh-hccCCCHHHHHHHHHHHH
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP------------LPLLQKLKT-YVKHTNPRIRAKAAISIS 214 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------------~kll~~L~~-~~~hKn~~VR~~aA~~L~ 214 (297)
+.+..++..|+....+++...++.+..+|..++..+.. .++++.|.. ..+.+++.+|..+...+.
T Consensus 79 --~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~ 156 (1207)
T d1u6gc_ 79 --YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 156 (1207)
T ss_dssp --HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 24678888888888888889999999999999987753 234445544 356789999999999999
Q ss_pred HHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 215 ICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 215 ~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
.++.++|.. +.. ..+.+++.+...++|..+.+|..|=.++..|-..++
T Consensus 157 ~l~~~~g~~-l~~-~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~ 204 (1207)
T d1u6gc_ 157 DMLSRQGGL-LVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 204 (1207)
T ss_dssp HHHHHTCSS-CTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHhhHh-hHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCC
Confidence 999998842 222 368899999999999999999999888887755443
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=0.00013 Score=72.50 Aligned_cols=149 Identities=17% Similarity=0.120 Sum_probs=120.1
Q ss_pred HHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchh
Q 022417 71 PCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSD 150 (297)
Q Consensus 71 ~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~ 150 (297)
..+.+.+.+.+|..|-.|+..+..++....+.+.+.+.++++.+...+++.--.|-..||.|+|.++..+.....+.
T Consensus 398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~--- 474 (888)
T d1qbkb_ 398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT--- 474 (888)
T ss_dssp HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH---
T ss_pred HHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh---
Confidence 34446778999999999999999998877888889999999999999999999999999999999998776623222
Q ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc
Q 022417 151 ALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGL 222 (297)
Q Consensus 151 ~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~ 222 (297)
.+..++..|+....+.+.-|++.|-.||..+++++.. ..+++.|....+......+..+...+..++...|.
T Consensus 475 ~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~ 552 (888)
T d1qbkb_ 475 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 552 (888)
T ss_dssp HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence 3677888888888899999999999999999988653 35666666666666667776666667777766553
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=8.8e-05 Score=75.18 Aligned_cols=189 Identities=16% Similarity=0.096 Sum_probs=133.3
Q ss_pred HHHhccCCcCHHHHHHHHHHHHHHHhhChh------hhhHHHHHHHHHHHHHhcCcch-HHHHHHHHHHHHHHHHcCCCC
Q 022417 72 CLIEGLDSKDWTNVCESLNNARRFALHHSS------LLEPNLEKVMAVVVKAMKNPRS-ALCKTSIMAASDIFSAFGDKL 144 (297)
Q Consensus 72 ~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e------~l~~~L~~i~~~v~~~vknLRS-~Vsk~A~~tl~dLf~~l~~~~ 144 (297)
.++..+.++++..+-.+...||.+...-+. +.....+.++..+...+.+... .|...|+..+++++..+|. .
T Consensus 87 ~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~-~ 165 (1207)
T d1u6gc_ 87 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG-L 165 (1207)
T ss_dssp HHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS-S
T ss_pred HHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH-h
Confidence 333444444555444444444444432221 1122344455555555555443 5677899999999999999 7
Q ss_pred CCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHhh
Q 022417 145 LDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP---LPLLQKLKTY-VKHTNPRIRAKAAISISICVTKM 220 (297)
Q Consensus 145 md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~-~~hKn~~VR~~aA~~L~~~v~~~ 220 (297)
+.+. .+.++..|+....+.+.-||..|-.||..++.+++. ..++..+... ..+.+..+|+.+..++..++...
T Consensus 166 l~~~---~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~ 242 (1207)
T d1u6gc_ 166 LVNF---HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 242 (1207)
T ss_dssp CTTT---HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred hHHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence 7765 678888888877888889999999999999998875 3577777654 45677778888888888888877
Q ss_pred CchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 221 GLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 221 g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
|. .+.. .++.+++.+.+++++.++++|+.+-.++..+-..++..
T Consensus 243 ~~-~~~~-~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 286 (1207)
T d1u6gc_ 243 GH-RIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE 286 (1207)
T ss_dssp SG-GGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred ch-hhHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhh
Confidence 73 3323 36889999999999999999999999999887777654
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.85 E-value=0.00049 Score=65.55 Aligned_cols=192 Identities=11% Similarity=0.073 Sum_probs=141.0
Q ss_pred HHHHHhcc-CCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcc
Q 022417 70 IPCLIEGL-DSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDST 148 (297)
Q Consensus 70 l~~~l~~L-~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~ 148 (297)
+..++..+ ...+|..+..++..+..++.+.++.+.+.++.+++.+...+.+.=..|...|+.++++++..++. .+.+.
T Consensus 599 ~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~-~~~~~ 677 (861)
T d2bpta1 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-DFRRY 677 (861)
T ss_dssp HHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-GGHHH
T ss_pred HHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHH-HhHhh
Confidence 33344444 45578778888999999999888888999999999999999999999999999999999999998 77654
Q ss_pred hhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCC-----------HHHHHHH
Q 022417 149 SDALDNLVLQLLMKASQ--DKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTN-----------PRIRAKA 209 (297)
Q Consensus 149 ~~~ld~ll~~LL~Ka~~--sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn-----------~~VR~~a 209 (297)
++.++..|+....+ .+..++..+-.|+..++.++.+ ..+++.+....+.+. ..+|..+
T Consensus 678 ---~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 754 (861)
T d2bpta1 678 ---SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAV 754 (861)
T ss_dssp ---HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHH
Confidence 77788777776654 4567889999999999887754 255565555444332 2466666
Q ss_pred HHHHHHHHHhhCch--hhhhccHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHHHHhccc
Q 022417 210 AISISICVTKMGLE--GMKELGLVSLVQVAAGLLNDR----LPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 210 A~~L~~~v~~~g~~--~l~~~~~~~ll~~~a~~l~D~----~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
...+..++..++.. .+..+ ++.+++.+...+.|. +.+++..+=.++..|...|++.
T Consensus 755 ~~~~~~i~~~~~~~~~~~~p~-~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 816 (861)
T d2bpta1 755 LDAYVGIVAGLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG 816 (861)
T ss_dssp HHHHHHHHHHTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcch
Confidence 66666666654322 23333 677788887777774 5677777777777778888764
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=0.00032 Score=60.02 Aligned_cols=177 Identities=11% Similarity=0.000 Sum_probs=120.6
Q ss_pred CcCHHHHHHHHHHHHHHHhhChhhh--hHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHH
Q 022417 79 SKDWTNVCESLNNARRFALHHSSLL--EPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLV 156 (297)
Q Consensus 79 s~dW~~~~eaL~~LRrLa~~h~e~l--~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll 156 (297)
+.|++.+..|+..|..|+. ..+.- .-.++.+...|...+++.-..|-..|+.+++.++..-.. .-.... -...+
T Consensus 28 ~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~-~~~~~~--~~~~i 103 (264)
T d1xqra1 28 AADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAA-IQEQVL--GLGAL 103 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHH-HHHHHH--HTTHH
T ss_pred CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH--HcCch
Confidence 5689999999999999984 33321 112344444555677888899999999999999953211 000000 01233
Q ss_pred HHHHHHhc-cccHHHHHHHHHHHHHHHHhcCchh-------HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhc
Q 022417 157 LQLLMKAS-QDKKFVCEEADRALNTMVESITPLP-------LLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKEL 228 (297)
Q Consensus 157 ~~LL~Ka~-~sn~FI~e~A~~AL~~Mv~~~s~~k-------ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~ 228 (297)
+.|+.-.. ++...++..+-.||..++.+..+.+ .++.|...+.+.++.++..++..|.+++..-.. ....+
T Consensus 104 ~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~ 182 (264)
T d1xqra1 104 RKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE-HKGTL 182 (264)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHH
T ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHH-HHHHH
Confidence 33333232 3556789999999999988776433 367788888999999999999999998875332 11122
Q ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 229 GLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 229 ~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
.-...++.+..++.+.++++|..+-.++..|-
T Consensus 183 ~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~ 214 (264)
T d1xqra1 183 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 214 (264)
T ss_dssp HHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 12345677788889999999999988887764
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.60 E-value=0.0035 Score=59.43 Aligned_cols=195 Identities=15% Similarity=0.184 Sum_probs=137.2
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHH-HHHhcCcchHHHHHHHHHHHHHHHHc--------
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVV-VKAMKNPRSALCKTSIMAASDIFSAF-------- 140 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v-~~~vknLRS~Vsk~A~~tl~dLf~~l-------- 140 (297)
++.+...+.+.||+.+..++..+..++..+++.+.+.+.+++..+ ....++.-..+...|+..+..++...
T Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~ 305 (861)
T d2bpta1 226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELA 305 (861)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456678899999999999999999999999999888877644 56667888888888888777665431
Q ss_pred --CCCCCCcc---hhhHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHHHHhcCch---hHHHHHHhhccCCCHHH
Q 022417 141 --GDKLLDST---SDALDNLVLQLLMKASQ-------DKKFVCEEADRALNTMVESITPL---PLLQKLKTYVKHTNPRI 205 (297)
Q Consensus 141 --~~~~md~~---~~~ld~ll~~LL~Ka~~-------sn~FI~e~A~~AL~~Mv~~~s~~---kll~~L~~~~~hKn~~V 205 (297)
........ ...+..++..++.-... +..-++..+..+|..+...+... .+++.+.....+.+...
T Consensus 306 ~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (861)
T d2bpta1 306 QFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN 385 (861)
T ss_dssp HCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHH
Confidence 21011111 12244455444443321 23357778888898888876532 33344446778899999
Q ss_pred HHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 022417 206 RAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTE 265 (297)
Q Consensus 206 R~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~ 265 (297)
|..+...+..+.+..+...+.. .++.+++.+..++.|.++.+|+.+-.++..+.+.++.
T Consensus 386 ~~~a~~~l~~i~~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T d2bpta1 386 REAAVMAFGSIMDGPDKVQRTY-YVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhcchhhHHH-HHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch
Confidence 9888877777776555433322 3688999999999999999999999998888777654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.55 E-value=0.00032 Score=62.45 Aligned_cols=192 Identities=15% Similarity=0.167 Sum_probs=130.2
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHH-HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCC---
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPN-LEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGD--- 142 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~-L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~--- 142 (297)
+..+..++..+.+.|++.+..++..+..|+.+.++..... -..+++.++..+++....+...|+.+++.++..-..
T Consensus 187 ~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~ 266 (434)
T d1q1sc_ 187 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 266 (434)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHH
Confidence 3346667778899999999999999999998666543321 134667777888888999999999999887632100
Q ss_pred CCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhccCCCHHHHHHHHHHHHH
Q 022417 143 KLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVKHTNPRIRAKAAISISI 215 (297)
Q Consensus 143 ~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~hKn~~VR~~aA~~L~~ 215 (297)
..++.. +-+.+..+ ..+.+.=+++.+..+|..++.+... ..+++.+.....+.++.+|..++..+.+
T Consensus 267 ~~~~~~---~~~~l~~l---l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~n 340 (434)
T d1q1sc_ 267 KVIDAG---ALAVFPSL---LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 340 (434)
T ss_dssp HHHHTT---GGGGHHHH---TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHhcc---ccchHHHh---hcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHH
Confidence 000000 11112222 2345556888888888877654322 2367777788889999999999999999
Q ss_pred HHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 022417 216 CVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 216 ~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~ 264 (297)
++..-+.+.+....-..+++.+..++.+.+++++..+-.++..+.+...
T Consensus 341 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~ 389 (434)
T d1q1sc_ 341 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 389 (434)
T ss_dssp HHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9877554443221112346667788899999999999888877766543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.0038 Score=59.54 Aligned_cols=189 Identities=15% Similarity=0.140 Sum_probs=130.7
Q ss_pred HHHHHhccC-CcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHcCCCCCC
Q 022417 70 IPCLIEGLD-SKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNP--RSALCKTSIMAASDIFSAFGDKLLD 146 (297)
Q Consensus 70 l~~~l~~L~-s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknL--RS~Vsk~A~~tl~dLf~~l~~~~md 146 (297)
+..++..|. ..+++.+..++..+..++...++.+.+.+.+++..+...+.+. ...|...++.++|++...+|. .+.
T Consensus 651 i~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~-~~~ 729 (876)
T d1qgra_ 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG-EFK 729 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG-GGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhH-hhH
Confidence 445555554 4569999999999999999888889999999999999999753 456778899999999999998 777
Q ss_pred cchhhHHHHHHHHHHHhc---c-cc----HH---HHHHHHHHHHHHHHhc----Cc------------hhHHHHHHh--h
Q 022417 147 STSDALDNLVLQLLMKAS---Q-DK----KF---VCEEADRALNTMVESI----TP------------LPLLQKLKT--Y 197 (297)
Q Consensus 147 ~~~~~ld~ll~~LL~Ka~---~-sn----~F---I~e~A~~AL~~Mv~~~----s~------------~kll~~L~~--~ 197 (297)
+. ++.++..|..-.. + +. .| +++..-.+...++... .. ..++..+.. .
T Consensus 730 ~y---l~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 806 (876)
T d1qgra_ 730 KY---LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG 806 (876)
T ss_dssp GG---HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHT
T ss_pred HH---HHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 65 6666655443222 1 11 22 2333434433443321 00 112222221 2
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhCchhhhhc-cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 198 VKHTNPRIRAKAAISISICVTKMGLEGMKEL-GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 198 ~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~-~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
....+..+++.++.++..++...|...+..+ ..+.+.+.+.......++++|..|+-+...+++.
T Consensus 807 ~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~~~~ 872 (876)
T d1qgra_ 807 DEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKELRKL 872 (876)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3467788999999999999999996543322 3467778888888999999999999888777664
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.0044 Score=54.26 Aligned_cols=156 Identities=12% Similarity=0.138 Sum_probs=106.6
Q ss_pred hccCCcCHHHHHHHHHHHHHHHhhChhhh---------------------hHHHHHHHHHHHHHhcC-------cchHHH
Q 022417 75 EGLDSKDWTNVCESLNNARRFALHHSSLL---------------------EPNLEKVMAVVVKAMKN-------PRSALC 126 (297)
Q Consensus 75 ~~L~s~dW~~~~eaL~~LRrLa~~h~e~l---------------------~~~L~~i~~~v~~~vkn-------LRS~Vs 126 (297)
..+.+.+-..+..++..+..++....+.. ...+..+++.+.....+ -...+.
T Consensus 265 ~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 344 (458)
T d1ibrb_ 265 EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPC 344 (458)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHH
Confidence 44466777888888888888875443221 23355666666655543 223477
Q ss_pred HHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc-------hhHHHHHHhhcc
Q 022417 127 KTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP-------LPLLQKLKTYVK 199 (297)
Q Consensus 127 k~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~-------~kll~~L~~~~~ 199 (297)
+.|..++..++..+|+.. ++.++..+..-..+++--+++.|-.+|..|+..+.+ ..+++.|..+.+
T Consensus 345 ~~a~~~l~~l~~~~~~~~-------~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~ 417 (458)
T d1ibrb_ 345 KAAGVCLMLLATCCEDDI-------VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK 417 (458)
T ss_dssp HHHHHHHHHHHHHTTTTH-------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhccHhh-------hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhC
Confidence 889999999999998732 333443333333467778999999999999876532 358899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHH
Q 022417 200 HTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVA 237 (297)
Q Consensus 200 hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~ 237 (297)
|.++.||..++.+|..+++.++.....+..+..+++.+
T Consensus 418 d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~l 455 (458)
T d1ibrb_ 418 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence 99999999999999999987764433222244444433
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0036 Score=59.72 Aligned_cols=196 Identities=18% Similarity=0.163 Sum_probs=132.6
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHH-HHHHHHHhcCcchHHHHHHHHHHHHHHHHcC-------
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKV-MAVVVKAMKNPRSALCKTSIMAASDIFSAFG------- 141 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i-~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~------- 141 (297)
++.+...+.+.||..+..++..+..++...++.+.+.+... ...+....++-.-.+.+.|+.....++....
T Consensus 219 ~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 298 (876)
T d1qgra_ 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEAS 298 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444566788999999999999999999999888766553 3455666777777788888877666654211
Q ss_pred -------CCCCCc-c--hhhHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHhcCc---hhHHHHHHhhccCC
Q 022417 142 -------DKLLDS-T--SDALDNLVLQLLMKAS-------QDKKFVCEEADRALNTMVESITP---LPLLQKLKTYVKHT 201 (297)
Q Consensus 142 -------~~~md~-~--~~~ld~ll~~LL~Ka~-------~sn~FI~e~A~~AL~~Mv~~~s~---~kll~~L~~~~~hK 201 (297)
...... . ...+..++..++.-.. ++..-++..|..+|..+...... ..+++.+..+..+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~ 378 (876)
T d1qgra_ 299 EAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP 378 (876)
T ss_dssp HHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc
Confidence 101111 0 1112233333222111 12334888999999999887764 24556666788899
Q ss_pred CHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 022417 202 NPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAFTEN 266 (297)
Q Consensus 202 n~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~~~~ 266 (297)
+...|..+...+..+.+..+...+..+ ...+++.+..++.|.+|.+|..+-.++..+.+.++..
T Consensus 379 ~~~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 442 (876)
T d1qgra_ 379 DWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA 442 (876)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchh
Confidence 999998877776666555443333333 6788999999999999999999999998888777653
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.005 Score=50.89 Aligned_cols=169 Identities=12% Similarity=0.032 Sum_probs=113.0
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcch
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTS 149 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~ 149 (297)
...++..|++.|...+..|+..|..+ .+ .+.++.+...+++.-..|-..|+.+++.+....+.
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~---~~-------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~------- 83 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLR---GG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC------- 83 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH---CC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhh---CC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-------
Confidence 45778899999999999999887765 22 34567778888999999999999998876322111
Q ss_pred hhHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHhcC--chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhh-
Q 022417 150 DALDNLVLQLLMKAS-QDKKFVCEEADRALNTMVESIT--PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGM- 225 (297)
Q Consensus 150 ~~ld~ll~~LL~Ka~-~sn~FI~e~A~~AL~~Mv~~~s--~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l- 225 (297)
-+..+..|+.... +.+..|+..+-.+|..|...-+ ...+++.+.....+.++.||..++..+...-.......+
T Consensus 84 --~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~~~~~~~l~ 161 (276)
T d1oyza_ 84 --EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLI 161 (276)
T ss_dssp --HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHH
T ss_pred --ccchHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcchHHHHHHHH
Confidence 2333334444333 5789999999999999987654 346788888889999999998877655432111000000
Q ss_pred --------------------hhccHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 226 --------------------KELGLVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 226 --------------------~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
...+.......+...+.|.++.+|..+-.++.
T Consensus 162 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 213 (276)
T d1oyza_ 162 NLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLS 213 (276)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccc
Confidence 00123455556666777888888777665544
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.30 E-value=0.0017 Score=57.63 Aligned_cols=187 Identities=15% Similarity=0.153 Sum_probs=122.4
Q ss_pred cHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 69 MIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 69 ~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
.++.++..+.+.++..+..++..++.++.+.++.....+ ..++..+...+++.+..|.+.|+.+++.++..-.. ....
T Consensus 231 ~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~ 309 (434)
T d1q1sc_ 231 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD-QIQQ 309 (434)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHH
T ss_pred cchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccch-hHHH
Confidence 355666778889999999999999999876554332221 34556777888999999999999999998753111 1100
Q ss_pred chhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchh--------HHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 148 TSDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESITPLP--------LLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 148 ~~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~k--------ll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
. ++ .++..++.-..+.+.-++..|-.+|..++.+.++.. +++.|...+..+++.++..+...+.++++
T Consensus 310 i---~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~ 386 (434)
T d1q1sc_ 310 V---VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 386 (434)
T ss_dssp H---HHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred H---hhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 0 00 122222222234556689999999998888876543 36667777889999999999888888876
Q ss_pred hh---Cchh-hhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 219 KM---GLEG-MKE-LGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 219 ~~---g~~~-l~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
.. +... +.. +.-.-+++.+-.+.+..++|+|..|-+++...
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 387 AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp HHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 32 2111 110 00001233444566888999998888776543
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.30 E-value=0.00067 Score=50.50 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=65.4
Q ss_pred HHHHhccccHHHHHHHHHHHHHHHHhcCchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHH
Q 022417 159 LLMKASQDKKFVCEEADRALNTMVESITPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAA 238 (297)
Q Consensus 159 LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a 238 (297)
|+.-..+.+..++..|-.+|.. +.....++.|...++|.++.||..++..|.. +|. +..++.+.
T Consensus 27 L~~~l~d~~~~vR~~a~~~L~~----~~~~~~~~~L~~~l~d~~~~VR~~a~~aL~~----i~~--------~~~~~~L~ 90 (111)
T d1te4a_ 27 LLESLSNEDWRIRGAAAWIIGN----FQDERAVEPLIKLLEDDSGFVRSGAARSLEQ----IGG--------ERVRAAME 90 (111)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGG----GCSHHHHHHHHHHHHHCCTHHHHHHHHHHHH----HCS--------HHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHh----cchhhhHHHHHhhhccchhHHHHHHHHHHHH----hCc--------cchHHHHH
Confidence 3333457889999999888864 3566789999999999999999998876643 343 55677788
Q ss_pred HhccCCCHHHHHHHHHHHH
Q 022417 239 GLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 239 ~~l~D~~pE~R~~aRk~l~ 257 (297)
.+++|.++++|..|-.++.
T Consensus 91 ~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 91 KLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHTTSCCTHHHHHHHHHGG
T ss_pred HHHcCCCHHHHHHHHHHHH
Confidence 8999999999999887753
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=0.0071 Score=51.20 Aligned_cols=146 Identities=10% Similarity=0.008 Sum_probs=99.2
Q ss_pred HHHHh-ccCCcCHHHHHHHHHHHHHHHhhChhhhhHH-HHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHHHcCCCCCCc
Q 022417 71 PCLIE-GLDSKDWTNVCESLNNARRFALHHSSLLEPN-LEKVMAVVVKAMK-NPRSALCKTSIMAASDIFSAFGDKLLDS 147 (297)
Q Consensus 71 ~~~l~-~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~-L~~i~~~v~~~vk-nLRS~Vsk~A~~tl~dLf~~l~~~~md~ 147 (297)
..++. .+++.|.+.+..|+..|..++.+++..-... -..+++.++..+. +.-..|-+.|+.+++.++..... ....
T Consensus 61 ~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~-~~~~ 139 (264)
T d1xqra1 61 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA-GLLQ 139 (264)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH-HHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchh-hHHH
Confidence 34454 5688999999999999999999887533221 1245555666554 44567888999999998854332 1111
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHh
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTK 219 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~ 219 (297)
. .-...+..|+.-..+.+.-++..+..+|..++..-+.. ..++.|..-+++.++.+|..++..|.+++..
T Consensus 140 ~--~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 140 F--LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp H--HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred H--HHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 0 01112344444444567778888999998888765432 2578888888999999999999999988764
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.99 E-value=0.0081 Score=54.78 Aligned_cols=180 Identities=11% Similarity=0.052 Sum_probs=117.4
Q ss_pred HHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhh
Q 022417 73 LIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNL-EKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDA 151 (297)
Q Consensus 73 ~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L-~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ 151 (297)
++..|.+.+-+.+..++..|..|+..+++.-...+ ..++..+...+.+-...+.++++.++..++..... ..+. ..
T Consensus 167 l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~-~~~~--~~ 243 (503)
T d1wa5b_ 167 FIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP-QPDW--SV 243 (503)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS-CCCH--HH
T ss_pred HHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCcc-chHH--HH
Confidence 33444556666666777777777765554222111 23456677888888899999999999999864333 2221 12
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-------chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchh
Q 022417 152 LDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-------PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEG 224 (297)
Q Consensus 152 ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~ 224 (297)
...+++.|+.-...++.-+...+-.+|..++.+.. ...+++.|...+.+.++.++..++..+.+++..-+ .
T Consensus 244 ~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~--~ 321 (503)
T d1wa5b_ 244 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND--L 321 (503)
T ss_dssp HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--H
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH--H
Confidence 44556666655556677788888889888765432 23466777788899999999999998888875322 2
Q ss_pred hhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 022417 225 MKELG-LVSLVQVAAGLLNDRLPEAREAARSMVN 257 (297)
Q Consensus 225 l~~~~-~~~ll~~~a~~l~D~~pE~R~~aRk~l~ 257 (297)
....- -..+++.+..++...++++|..+=.++.
T Consensus 322 ~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~ 355 (503)
T d1wa5b_ 322 QTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 355 (503)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 11110 1235677788888999998876644443
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.0092 Score=54.41 Aligned_cols=193 Identities=11% Similarity=0.087 Sum_probs=131.8
Q ss_pred cccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhHHHH-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 67 ESMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEPNLE-KVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 67 e~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~~L~-~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
...+..++..+.+.|++....++..+..|+.++++.....+. .++..+...+++--..+...|+.+++.+...-.. ..
T Consensus 245 ~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~-~~ 323 (503)
T d1wa5b_ 245 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDL-QT 323 (503)
T ss_dssp GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-HH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHH-HH
Confidence 345777888899999999999999999999877776543332 4667788889888889999999999988742111 10
Q ss_pred CcchhhHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-------chhHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALD-NLVLQLLMKASQDKKFVCEEADRALNTMVESIT-------PLPLLQKLKTYVKHTNPRIRAKAAISISICV 217 (297)
Q Consensus 146 d~~~~~ld-~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-------~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v 217 (297)
+ . -++ .++..|..-..+.+.=++..+-.+|..++.+.. ...+++.+.....+.+..|+..++..|.+++
T Consensus 324 ~-~--~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~ 400 (503)
T d1wa5b_ 324 Q-V--VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 400 (503)
T ss_dssp H-H--HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred H-h--hhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHH
Confidence 0 0 011 122333322334667788899999988765322 1345677777778889999999999999998
Q ss_pred HhhCc-hhhhhc-cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 218 TKMGL-EGMKEL-GLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 218 ~~~g~-~~l~~~-~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
..... .....+ .-..+++.+..++...++++...+=.++..+....
T Consensus 401 ~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~ 448 (503)
T d1wa5b_ 401 SGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 448 (503)
T ss_dssp HHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 75332 111111 11235566777888889999988877777766544
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.02 Score=46.99 Aligned_cols=126 Identities=13% Similarity=0.019 Sum_probs=89.2
Q ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcC-chh
Q 022417 111 MAVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESIT-PLP 189 (297)
Q Consensus 111 ~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s-~~k 189 (297)
...+.+.+++....|=..|+.+++.+ |. +..+..|+.-..+.+..++..|-.+|..+..... ...
T Consensus 21 ~~~L~~~L~d~~~~vR~~A~~~L~~~----~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~ 86 (276)
T d1oyza_ 21 DDELFRLLDDHNSLKRISSARVLQLR----GG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 86 (276)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHH----CC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhh----CC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc
Confidence 34677899999999999999998865 43 1233444444457889999999999988754433 345
Q ss_pred HHHHHH-hhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 022417 190 LLQKLK-TYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMV 256 (297)
Q Consensus 190 ll~~L~-~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l 256 (297)
.++.|. ..+++.++.||..++..|..+..... ...+.+++.+...++|.++++|..+-.++
T Consensus 87 ~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~~~~~~~l~~~~~d~~~~vr~~a~~~l 148 (276)
T d1oyza_ 87 VFNILNNMALNDKSACVRATAIESTAQRCKKNP------IYSPKIVEQSQITAFDKSTNVRRATAFAI 148 (276)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc------hhhHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 555564 36789999999999988877665321 11356777777888888888887665444
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.067 Score=48.63 Aligned_cols=185 Identities=14% Similarity=0.067 Sum_probs=117.3
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhh-HHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHHcCCCCC
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLE-PNLEKVMAVVVKAMKN-PRSALCKTSIMAASDIFSAFGDKLL 145 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~-~~L~~i~~~v~~~vkn-LRS~Vsk~A~~tl~dLf~~l~~~~m 145 (297)
.+++.++..|+++|=..+..|+..+..|+.+.+.... -.-..++..+.+.+.+ --..+.+.|+.++..|+..-.. .
T Consensus 17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~--~ 94 (529)
T d1jdha_ 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG--L 94 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH--H
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--H
Confidence 4467888899999999999999999999875432111 0114566666666653 3457888999999888531110 0
Q ss_pred CcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Q 022417 146 DSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVT 218 (297)
Q Consensus 146 d~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~ 218 (297)
....+ ...++.|+.-..+.+.-++..|-.+|..++.+-... ..++.|...+++.++.++..++.++.++..
T Consensus 95 ~~i~~--~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~ 172 (529)
T d1jdha_ 95 LAIFK--SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHH--CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhh
Confidence 00000 022444444445677889999999999888775543 357888888899999999999999988875
Q ss_pred hhCchh--hhh-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 219 KMGLEG--MKE-LGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 219 ~~g~~~--l~~-~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
.-...+ +.. ++...++..+. ....+..+..+-.++..+
T Consensus 173 ~~~~~~~~~~~~~~~~~L~~ll~---~~~~~~~~~~~~~~l~~l 213 (529)
T d1jdha_ 173 GNQESKLIILASGGPQALVNIMR---TYTYEKLLWTTSRVLKVL 213 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHH---HCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcccchHHHHHHH---hhhhHHHHHHHHHHHhhh
Confidence 422111 111 23444444432 233456666665555543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.33 Score=43.74 Aligned_cols=183 Identities=13% Similarity=0.117 Sum_probs=118.5
Q ss_pred HHHHHhccCCcCHHHHHHHHHHHHHHHhhChhhhhH-HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC-CCCc
Q 022417 70 IPCLIEGLDSKDWTNVCESLNNARRFALHHSSLLEP-NLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK-LLDS 147 (297)
Q Consensus 70 l~~~l~~L~s~dW~~~~eaL~~LRrLa~~h~e~l~~-~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~-~md~ 147 (297)
+..++..|++.|=..+..++..|..|+.+++..-.. .-...++.++..+++....+...|+.+++.+...-... ....
T Consensus 103 i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 182 (529)
T d1jdha_ 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 182 (529)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 566677788887788889999999999877642211 12446778888889988999999999999886321000 0000
Q ss_pred chhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCc------hhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC
Q 022417 148 TSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITP------LPLLQKLKTYVKHTNPRIRAKAAISISICVTKMG 221 (297)
Q Consensus 148 ~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g 221 (297)
....++.++ .+|.. .+..-+.+.+..++..+..+-.. ...++.|...+++.+..++..++..+.++-....
T Consensus 183 ~~~~~~~L~-~ll~~--~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~ 259 (529)
T d1jdha_ 183 ASGGPQALV-NIMRT--YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp HTTHHHHHH-HHHHH--CCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred hcccchHHH-HHHHh--hhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc
Confidence 011122222 22221 23344666677777665433221 1246777788899999999998888877643211
Q ss_pred chhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 022417 222 LEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSM 259 (297)
Q Consensus 222 ~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L 259 (297)
...+....++.+.+++.+.++++|..+-.+++.|
T Consensus 260 ----~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l 293 (529)
T d1jdha_ 260 ----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 293 (529)
T ss_dssp ----TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----chhhhhhcchhhhhhcccccHHHHHHHHHHHHhh
Confidence 1223456777888888999999999988887765
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.49 E-value=0.064 Score=39.02 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=62.6
Q ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhcCchhHH
Q 022417 112 AVVVKAMKNPRSALCKTSIMAASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQDKKFVCEEADRALNTMVESITPLPLL 191 (297)
Q Consensus 112 ~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~kll 191 (297)
..+++.+++....|-..|+.+++.+ +. + ..+..|+.-..+.+.+|+..|-.||..| ...+.+
T Consensus 25 ~~L~~~l~d~~~~vR~~a~~~L~~~----~~----~------~~~~~L~~~l~d~~~~VR~~a~~aL~~i----~~~~~~ 86 (111)
T d1te4a_ 25 EPLLESLSNEDWRIRGAAAWIIGNF----QD----E------RAVEPLIKLLEDDSGFVRSGAARSLEQI----GGERVR 86 (111)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGG----CS----H------HHHHHHHHHHHHCCTHHHHHHHHHHHHH----CSHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhc----ch----h------hhHHHHHhhhccchhHHHHHHHHHHHHh----CccchH
Confidence 3456678888889999999888753 22 1 1222233323467889999999999876 667899
Q ss_pred HHHHhhccCCCHHHHHHHHHHH
Q 022417 192 QKLKTYVKHTNPRIRAKAAISI 213 (297)
Q Consensus 192 ~~L~~~~~hKn~~VR~~aA~~L 213 (297)
+.|...+.+.++.||..+...|
T Consensus 87 ~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 87 AAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp HHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999887654
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.36 Score=40.73 Aligned_cols=103 Identities=10% Similarity=0.024 Sum_probs=73.5
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCch--hhhh
Q 022417 157 LQLLMKASQDKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLE--GMKE 227 (297)
Q Consensus 157 ~~LL~Ka~~sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~--~l~~ 227 (297)
+.|+.-..+++.=++..|..+|..++..-... ..++.|...++|.|+.+|..++..|.++...-... .+..
T Consensus 5 p~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~ 84 (457)
T d1xm9a1 5 PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRR 84 (457)
T ss_dssp HHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444445677889999999999987544432 34778888999999999999999999998532221 2222
Q ss_pred -ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 022417 228 -LGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNA 262 (297)
Q Consensus 228 -~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~ 262 (297)
+++..++..+ ..+.++++|..+-.++..|...
T Consensus 85 ~g~v~~li~~l---~~~~~~~~~~~a~~~l~~l~~~ 117 (457)
T d1xm9a1 85 QNGIREAVSLL---RRTGNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp TTCHHHHHHHH---TTCCCHHHHHHHHHHHHHHHTS
T ss_pred CCChHHHHHHH---hccCcHHHHHHHHHHHHHHHhh
Confidence 4566655543 4678999999999988887553
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.46 Score=36.98 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=71.9
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND------RLPEAREAARSMVNSMY 260 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D------~~pE~R~~aRk~l~~L~ 260 (297)
|..++.+|..-.+|+||.+...+..+|..|++.-|..-.....-..+++.+.+++.+ .+++||.-...++....
T Consensus 36 ~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa 115 (143)
T d1mhqa_ 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (143)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 445777787778999999999999999999999996554445567788888888875 47899999999999999
Q ss_pred HHhccchhhhHHHHHHHHHh
Q 022417 261 NAFTENEEHKQEAWQSFCQS 280 (297)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~ 280 (297)
..|.+.. .-.+.|..+-++
T Consensus 116 ~~f~~~~-~~~~~y~~Lk~~ 134 (143)
T d1mhqa_ 116 VWFPEDI-KIRDAYQMLKKQ 134 (143)
T ss_dssp HHCTTCH-HHHHHHHHHHHT
T ss_pred HHcCCCc-hHHHHHHHHHHC
Confidence 9987543 233666665443
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.04 E-value=0.34 Score=37.75 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=69.8
Q ss_pred CchhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhc
Q 022417 186 TPLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND-RLPEAREAARSMVNSMYNAFT 264 (297)
Q Consensus 186 s~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D-~~pE~R~~aRk~l~~L~~~~~ 264 (297)
.+..++.+|...++|+||.+...+..+|..|++.-|..--....-..+++.+.+++.. ....||+-...++......|.
T Consensus 39 ~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (145)
T d1dvpa1 39 TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (145)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3567888888889999999999999999999999886533333334455555555533 367899999999999999997
Q ss_pred cchh--hhHHHHHHHHHhc
Q 022417 265 ENEE--HKQEAWQSFCQSN 281 (297)
Q Consensus 265 ~~~~--~~~~~~~~~~~~~ 281 (297)
...+ .-.+.|+.+-.+-
T Consensus 119 ~~~~~~~i~~~y~~Lk~~G 137 (145)
T d1dvpa1 119 SSDKYQAIKDTMTILKAKG 137 (145)
T ss_dssp TCSSCCHHHHHHHHHHHTT
T ss_pred CCccchHHHHHHHHHHHCC
Confidence 6543 2346677665543
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.59 Score=36.66 Aligned_cols=94 Identities=12% Similarity=0.189 Sum_probs=69.5
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccCC------CHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLNDR------LPEAREAARSMVNSMY 260 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D~------~pE~R~~aRk~l~~L~ 260 (297)
+..++.+|..-.+|+||.+...+..+|..|++.-|..--....-..+++.+.+++.+. .++|+.-...++....
T Consensus 37 ~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa 116 (151)
T d1juqa_ 37 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 116 (151)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHH
Confidence 4567788877789999999999999999999998865433334466777777777653 6789998888888888
Q ss_pred HHhccchhhhHHHHHHHHHhc
Q 022417 261 NAFTENEEHKQEAWQSFCQSN 281 (297)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~ 281 (297)
..|++.. .-.+.|..+-++-
T Consensus 117 ~~f~~~~-~~~~~Y~~Lk~~G 136 (151)
T d1juqa_ 117 MALPEEA-KIKDAYHMLKRQG 136 (151)
T ss_dssp HHCTTCH-HHHHHHHHHHHTT
T ss_pred HHccccH-HHHHHHHHHHHcC
Confidence 8886332 2336677665554
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.84 E-value=2.4 Score=40.28 Aligned_cols=174 Identities=12% Similarity=0.138 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHhhChhhhhHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHcCCC----------CCCcchhhH
Q 022417 83 TNVCESLNNARRFALHHSSLLEPNLEKVMAVVVKAMKNPRSALCKTSIMAASDIFSAFGDK----------LLDSTSDAL 152 (297)
Q Consensus 83 ~~~~eaL~~LRrLa~~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk~A~~tl~dLf~~l~~~----------~md~~~~~l 152 (297)
..+..++..+-+.+ .....+.+..++..+...+.+.--.|.-.|+.|+..++...... .+.| .+
T Consensus 473 ~lr~~~~~~i~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p---~l 546 (959)
T d1wa5c_ 473 ILRVDAIKYIYTFR---NQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN---ST 546 (959)
T ss_dssp HHHHHHHHHHHHTG---GGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT---TH
T ss_pred HHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHh---hH
Confidence 34444444444433 33334667889999999999888888899999999998765431 2233 36
Q ss_pred HHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHhcCc------hhHHHHHH----hhcc-CCCHHHHHHHHHHHHHH
Q 022417 153 DNLVLQLLMKASQ-----DKKFVCEEADRALNTMVESITP------LPLLQKLK----TYVK-HTNPRIRAKAAISISIC 216 (297)
Q Consensus 153 d~ll~~LL~Ka~~-----sn~FI~e~A~~AL~~Mv~~~s~------~kll~~L~----~~~~-hKn~~VR~~aA~~L~~~ 216 (297)
+.++..|+....+ .+.+..+..-.++..++..... ..+++.|. ...+ ..++.....+..++..+
T Consensus 547 ~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l 626 (959)
T d1wa5c_ 547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAI 626 (959)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 6777666665433 2334445566777776666542 23444443 2333 35678888888888888
Q ss_pred HHhhCchhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 022417 217 VTKMGLEGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMYNAF 263 (297)
Q Consensus 217 v~~~g~~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~~~~ 263 (297)
+.-.|++....+ .+.+++.+...++....+...++-.++..+-...
T Consensus 627 ~~~~~~~~~~~l-~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 672 (959)
T d1wa5c_ 627 LNYTQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (959)
T ss_dssp HHTSCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHhcCchhHHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence 877665543333 5677777777776666777777777666654443
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.31 E-value=0.99 Score=35.03 Aligned_cols=92 Identities=13% Similarity=0.157 Sum_probs=67.9
Q ss_pred chhHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHHHHhccC------CCHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYVKHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVAAGLLND------RLPEAREAARSMVNSMY 260 (297)
Q Consensus 187 ~~kll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~a~~l~D------~~pE~R~~aRk~l~~L~ 260 (297)
+..++.+|..-++|+|+.+...+..+|..|++.-|..--...+-..+++.+.+++.+ -+++||.-...++....
T Consensus 43 ~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~ 122 (145)
T d1ujka_ 43 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 122 (145)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHH
Confidence 446777887778999999999999999999999886544444556677777777764 46789998988888888
Q ss_pred HHhccchhhhHHHHHHHHH
Q 022417 261 NAFTENEEHKQEAWQSFCQ 279 (297)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~ 279 (297)
..|++. ..-.+.|..+.+
T Consensus 123 ~~fp~~-~~~~~~Y~~L~~ 140 (145)
T d1ujka_ 123 VGLPEE-VKIAEAYQMLKK 140 (145)
T ss_dssp HHCTTC-HHHHHHHHHHHH
T ss_pred HHCCCc-hHHHHHHHHHHH
Confidence 888532 223356665544
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.72 E-value=9.8 Score=35.72 Aligned_cols=151 Identities=8% Similarity=0.078 Sum_probs=102.4
Q ss_pred ccHHHHHhccCCcCHHHHHHHHHHHHHHHh-----------hChhhhhHHHHHHHHHHHHHhcCcchHHHH-----HHHH
Q 022417 68 SMIPCLIEGLDSKDWTNVCESLNNARRFAL-----------HHSSLLEPNLEKVMAVVVKAMKNPRSALCK-----TSIM 131 (297)
Q Consensus 68 ~~l~~~l~~L~s~dW~~~~eaL~~LRrLa~-----------~h~e~l~~~L~~i~~~v~~~vknLRS~Vsk-----~A~~ 131 (297)
..+..++..|.+.+=..+..|...++++.. ++.+.+.+.++.++..+...+...-+...+ ..+.
T Consensus 496 ~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~ 575 (959)
T d1wa5c_ 496 ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMR 575 (959)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHH
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 456677778888888888899999999985 345677788888888887777654443333 3778
Q ss_pred HHHHHHHHcCCCCCCcchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHhcCch-------hHHHHHHhhccCCC
Q 022417 132 AASDIFSAFGDKLLDSTSDALDNLVLQLLMKASQ--DKKFVCEEADRALNTMVESITPL-------PLLQKLKTYVKHTN 202 (297)
Q Consensus 132 tl~dLf~~l~~~~md~~~~~ld~ll~~LL~Ka~~--sn~FI~e~A~~AL~~Mv~~~s~~-------kll~~L~~~~~hKn 202 (297)
+++.++..++. .+.+....+-..+..++.+..+ .+.......-.++..++..+++. .++|.+....++..
T Consensus 576 ~l~~ii~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~ 654 (959)
T d1wa5c_ 576 SIFRVLQTSED-SIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI 654 (959)
T ss_dssp HHHHHHHHHTT-TTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccc
Confidence 89999999998 7777644444555555555544 45666777788888888876643 34565555444444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 022417 203 PRIRAKAAISISICVTK 219 (297)
Q Consensus 203 ~~VR~~aA~~L~~~v~~ 219 (297)
......+..++..++..
T Consensus 655 ~~~~~~~~~l~~~~~~~ 671 (959)
T d1wa5c_ 655 QEFIPYVFQIIAFVVEQ 671 (959)
T ss_dssp TTTHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHh
Confidence 44555566666665554
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.53 E-value=0.56 Score=39.43 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=50.3
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc--hhhhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 022417 190 LLQKLKTYVKHTNPRIRAKAAISISICVTKMGL--EGMKELGLVSLVQVAAGLLNDRLPEAREAARSMVNSMY 260 (297)
Q Consensus 190 ll~~L~~~~~hKn~~VR~~aA~~L~~~v~~~g~--~~l~~~~~~~ll~~~a~~l~D~~pE~R~~aRk~l~~L~ 260 (297)
.||.|...+++.++.|+..+|.+|.+++..-.. ..+.+. -.++.+.+++.+.++++|..|=.++..|-
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~---g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 72 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL---GGICKLVDLLRSPNQNVQQAAAGALRNLV 72 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT---THHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC---CcHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 378888999999999999999999999853221 122221 22444556788999999999888887663
|
| >d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Tom1 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.06 E-value=5.9 Score=30.53 Aligned_cols=94 Identities=13% Similarity=0.155 Sum_probs=63.6
Q ss_pred chhHHHHHHhhc-cCCCHHHHHHHHHHHHHHHHhhCchhhhhccHHHHHHHH-HHhcc---CCCHHHHHHHHHHHHHHHH
Q 022417 187 PLPLLQKLKTYV-KHTNPRIRAKAAISISICVTKMGLEGMKELGLVSLVQVA-AGLLN---DRLPEAREAARSMVNSMYN 261 (297)
Q Consensus 187 ~~kll~~L~~~~-~hKn~~VR~~aA~~L~~~v~~~g~~~l~~~~~~~ll~~~-a~~l~---D~~pE~R~~aRk~l~~L~~ 261 (297)
+..++.+|..-+ +++|+.+...+..+|..|++.-|..--.+..-..++..+ .+.+. +...+||+-...++.....
T Consensus 47 ~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~Fl~~ll~~~~~~~~~~~~~Vk~kil~li~~W~~ 126 (153)
T d1elka_ 47 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 126 (153)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 456778887654 689999999999999999999986543333334444432 22222 2345799999999999999
Q ss_pred Hhccchh--hhHHHHHHHHHh
Q 022417 262 AFTENEE--HKQEAWQSFCQS 280 (297)
Q Consensus 262 ~~~~~~~--~~~~~~~~~~~~ 280 (297)
.|..+.+ .-.+.|..+-.+
T Consensus 127 ~f~~~p~~~~i~~~y~~Lk~~ 147 (153)
T d1elka_ 127 AFRSSPDLTGVVTIYEDLRRK 147 (153)
T ss_dssp HHTTCTTCHHHHHHHHHHHHH
T ss_pred HhcCCccchHHHHHHHHHHHC
Confidence 9965443 233666665443
|