Citrus Sinensis ID: 022423

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSSTGITYKSGSASFGTGGYRSSDRYGGSGDNFRESYKDRDPYGEEKTGNDTFGKSRRGAASENQGNTLKKGFARKDQDNMSSNASKSAMKSNDSDKYSSIPSQSSSIPSNKYDDDFDDFDPRGTSSNSKYSV
cccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHcccEcccccEcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccc
MDFMKVFDQTVREIKREVnlkvlkvpEIEQKvldatdnepwgphgTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFqisslssfeyvepsgkdmginvRKKAENIVALLNNKDKIQEVRNKASanrekyfglsstgityksgsasfgtggyrssdryggsgdnfresykdrdpygeektgndtfgksrrgaasenqgntlkkgfarkdqdnmssnasksamksndsdkyssipsqsssipsnkydddfddfdprgtssnskysv
mdfmkvfdqtvreikrevnlkvlkvpeiEQKVLDatdnepwgPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNkasanrekyfglsstgityksgsasfgtggyrssdryggsgdnfresykdrdpygeektgndtfgksrrgaasenqgntlkkgfarkdqdnmssNASKsamksndsdkyssipsqsssipsnkydDDFDDFdprgtssnskysv
MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSSTGITYKSGSASFGTggyrssdryggsgdNFRESYKDRDPYGEEKTGNDTFGKSRRGAASENQGNTLKKGFARKDQdnmssnasksamksndsdkYssipsqsssipsNKYdddfddfdPRGTSSNSKYSV
*****VFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNN*****************YFGL***GI*******************************************************************************************************************************
*********TVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVR*************************************************************************************************************************************************
MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSSTGITYKSGSASFGTGGYRSSDRYGGSGDNFRESYKDRDPYGEEKTGNDTFGKSRRGAASENQGNTLKKGFARKD*********************************NKYDDDFDDFDPR**********
MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFG*************************************************************************************************************************************
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MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSSTGITYKSGSASFGTGGYRSSDRYGGSGDNFRESYKDRDPYGEEKTGNDTFGKSRRGAASENQGNTLKKGFARKDQDNMSSNASKSAMKSNDSDKYSSIPSQSSSIPSNKYDDDFDDFDPRGTSSNSKYSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query297 2.2.26 [Sep-21-2011]
Q8VY07 560 Clathrin interactor EPSIN yes no 0.925 0.491 0.725 1e-102
Q67YI9 895 Clathrin interactor EPSIN no no 0.801 0.265 0.468 7e-63
Q93YP4 1024 Clathrin interactor EPSIN no no 0.723 0.209 0.502 5e-60
Q54EH1 686 Epsin OS=Dictyostelium di yes no 0.481 0.208 0.430 7e-34
A7Z035 643 Clathrin interactor 1 OS= yes no 0.569 0.262 0.403 4e-32
Q14677 625 Clathrin interactor 1 OS= yes no 0.569 0.270 0.403 4e-32
P78813 476 ENTH domain-containing pr yes no 0.649 0.405 0.360 1e-31
O95208 641 Epsin-2 OS=Homo sapiens G no no 0.622 0.288 0.375 3e-31
Q9Z1Z3 583 Epsin-2 OS=Rattus norvegi no no 0.622 0.317 0.375 1e-30
Q8CHU3 595 Epsin-2 OS=Mus musculus G no no 0.622 0.310 0.375 1e-30
>sp|Q8VY07|EPN1_ARATH Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana GN=EPSIN1 PE=1 SV=1 Back     alignment and function desciption
 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/295 (72%), Positives = 240/295 (81%), Gaps = 20/295 (6%)

Query: 1   MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSE 60
           MDFMKVFDQTVREIKREVNLKVLKVPE+EQKVLDATDNEPWGPHGTALAEIAQATKKFSE
Sbjct: 1   MDFMKVFDQTVREIKREVNLKVLKVPEMEQKVLDATDNEPWGPHGTALAEIAQATKKFSE 60

Query: 61  CQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYV 120
           CQMVM+VLWTRL+ETGKDWRYVYKALAVI+YLIS+GSERAVD+IIEHT+QISSL+SFEYV
Sbjct: 61  CQMVMSVLWTRLSETGKDWRYVYKALAVIDYLISNGSERAVDEIIEHTYQISSLTSFEYV 120

Query: 121 EPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSSTGITYKSGSASFG 180
           EP+GKD+GINVRKKAENIVALLNNK+KI E+R+KA ANR KY GLSSTGITYKSGS++  
Sbjct: 121 EPNGKDVGINVRKKAENIVALLNNKEKISEIRDKAVANRNKYVGLSSTGITYKSGSSASF 180

Query: 181 TGGYRSSDRYGGSGDNFRESYKDRDPYGEEKTGNDTFGKSRRGAASENQGNTLKKGFAR- 239
            G ++S    G S  NF +SYKDRD   E+K   ++F KSRRG  +E Q  T KK F+R 
Sbjct: 181 GGSFQS----GSS--NF-DSYKDRDSR-EDKNDYESFQKSRRGVKTEEQSYTSKKSFSRY 232

Query: 240 --KDQDNMSSNASKSAMKSNDSDKYSSIPSQSSSIPSNKYDDDFDDFDPRGTSSN 292
              D DN+S     S  KS DS K+ S     S+ PSN  DD  DDFDPRGTSSN
Sbjct: 233 GSTDHDNLS-----SGKKSPDSAKHRSY---VSAAPSNNDDDF-DDFDPRGTSSN 278
May have a role in transport via clathrin-coated vesicles from the trans-Golgi network to endosomes. Stimulates clathrin assembly (By similarity). Seems to not binds to phospholipids. Plays an important role in the vacuolar trafficking of soluble cargo proteins at the trans-Golgi network.
Arabidopsis thaliana (taxid: 3702)
>sp|Q67YI9|EPN2_ARATH Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana GN=EPSIN2 PE=1 SV=1 Back     alignment and function description
>sp|Q93YP4|EPN3_ARATH Clathrin interactor EPSIN 3 OS=Arabidopsis thaliana GN=EPSIN3 PE=2 SV=1 Back     alignment and function description
>sp|Q54EH1|EPN_DICDI Epsin OS=Dictyostelium discoideum GN=epnA PE=3 SV=1 Back     alignment and function description
>sp|A7Z035|EPN4_BOVIN Clathrin interactor 1 OS=Bos taurus GN=CLINT1 PE=2 SV=1 Back     alignment and function description
>sp|Q14677|EPN4_HUMAN Clathrin interactor 1 OS=Homo sapiens GN=CLINT1 PE=1 SV=1 Back     alignment and function description
>sp|P78813|YCTB_SCHPO ENTH domain-containing protein C794.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC794.11c PE=1 SV=2 Back     alignment and function description
>sp|O95208|EPN2_HUMAN Epsin-2 OS=Homo sapiens GN=EPN2 PE=1 SV=3 Back     alignment and function description
>sp|Q9Z1Z3|EPN2_RAT Epsin-2 OS=Rattus norvegicus GN=Epn2 PE=1 SV=1 Back     alignment and function description
>sp|Q8CHU3|EPN2_MOUSE Epsin-2 OS=Mus musculus GN=Epn2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
225429422 565 PREDICTED: clathrin interactor EPSIN 1-l 0.956 0.502 0.739 1e-116
296081602 608 unnamed protein product [Vitis vinifera] 0.956 0.467 0.739 1e-115
356552314 564 PREDICTED: clathrin interactor EPSIN 1-l 0.966 0.508 0.708 1e-109
356564095 564 PREDICTED: clathrin interactor EPSIN 1-l 0.966 0.508 0.711 1e-108
359476202 552 PREDICTED: clathrin interactor EPSIN 1-l 0.912 0.490 0.695 1e-103
449450326 621 PREDICTED: clathrin interactor EPSIN 1-l 0.952 0.455 0.740 1e-103
449527547375 PREDICTED: clathrin interactor EPSIN 1-l 0.952 0.754 0.740 1e-102
297807213 573 hypothetical protein ARALYDRAFT_325696 [ 0.936 0.485 0.711 1e-102
7573385 577 clathrin binding protein-like [Arabidops 0.936 0.481 0.721 1e-101
22326733 560 clathrin interactor EPSIN 1 [Arabidopsis 0.925 0.491 0.725 1e-100
>gi|225429422|ref|XP_002276103.1| PREDICTED: clathrin interactor EPSIN 1-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/299 (73%), Positives = 258/299 (86%), Gaps = 15/299 (5%)

Query: 1   MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSE 60
           MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHG+ALAEIAQATKKF+E
Sbjct: 1   MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGSALAEIAQATKKFTE 60

Query: 61  CQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYV 120
           CQMVMNVLWTRL+++G+DWR+VYK+LAVIEYL+++GSERAVDDIIEHTFQISSLS FEYV
Sbjct: 61  CQMVMNVLWTRLSDSGRDWRHVYKSLAVIEYLVANGSERAVDDIIEHTFQISSLSGFEYV 120

Query: 121 EPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSSTGITYKSGSASFG 180
           EP+GKD+GINVRKKAE IVALLNNK+KIQEVRNKA+ANR+K+FGLSS+G+TYKS SA +G
Sbjct: 121 EPNGKDVGINVRKKAETIVALLNNKEKIQEVRNKAAANRDKFFGLSSSGVTYKSSSAPYG 180

Query: 181 TGGYRSSDRYGG-----SGDNFRESYKDRDPYGEEKTGNDTFGKSRRGAASENQGNTLKK 235
           +  ++S+D++GG       D+FR+SYKDRD + EEK   DT  KSR+G  SEN+GNT KK
Sbjct: 181 SSSFQSADQHGGMSSKRENDSFRDSYKDRDRFDEEKVDEDTSAKSRQGVTSENEGNTFKK 240

Query: 236 GFAR---KDQDNMSSNASKSAMKSNDSDKYSSIPSQSSSIPSNKYDDDFDDFDPRGTSS 291
           G AR   KD+D +S+       K+N SDKY SIPS SSS+PS   +DDFDDFDPRGTSS
Sbjct: 241 GSARYSSKDKDTLST-------KANYSDKYGSIPSHSSSVPSINDEDDFDDFDPRGTSS 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296081602|emb|CBI20607.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356552314|ref|XP_003544513.1| PREDICTED: clathrin interactor EPSIN 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356564095|ref|XP_003550292.1| PREDICTED: clathrin interactor EPSIN 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|359476202|ref|XP_002276157.2| PREDICTED: clathrin interactor EPSIN 1-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449450326|ref|XP_004142914.1| PREDICTED: clathrin interactor EPSIN 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449527547|ref|XP_004170772.1| PREDICTED: clathrin interactor EPSIN 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297807213|ref|XP_002871490.1| hypothetical protein ARALYDRAFT_325696 [Arabidopsis lyrata subsp. lyrata] gi|297317327|gb|EFH47749.1| hypothetical protein ARALYDRAFT_325696 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7573385|emb|CAB87689.1| clathrin binding protein-like [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22326733|ref|NP_196732.2| clathrin interactor EPSIN 1 [Arabidopsis thaliana] gi|75161393|sp|Q8VY07.1|EPN1_ARATH RecName: Full=Clathrin interactor EPSIN 1; AltName: Full=EPSIN-related 1 gi|18377702|gb|AAL67001.1| putative clathrin binding protein [Arabidopsis thaliana] gi|20465545|gb|AAM20255.1| putative clathrin binding protein [Arabidopsis thaliana] gi|110735797|dbj|BAE99875.1| clathrin binding protein - like [Arabidopsis thaliana] gi|332004330|gb|AED91713.1| clathrin interactor EPSIN 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
TAIR|locus:2181920 560 AT5G11710 [Arabidopsis thalian 0.774 0.410 0.775 1.4e-93
TAIR|locus:2040981 895 AT2G43160 [Arabidopsis thalian 0.720 0.239 0.497 8.2e-55
TAIR|locus:2081167 1024 AT3G59290 [Arabidopsis thalian 0.531 0.154 0.613 6.8e-54
DICTYBASE|DDB_G0291512 686 epnA "epsin" [Dictyostelium di 0.700 0.303 0.372 9.8e-36
RGD|1303328 472 Clint1 "clathrin interactor 1" 0.538 0.338 0.416 1.9e-35
UNIPROTKB|Q14677 625 CLINT1 "Clathrin interactor 1" 0.538 0.256 0.416 3.1e-34
UNIPROTKB|A7Z035 643 CLINT1 "Clathrin interactor 1" 0.538 0.248 0.416 4e-34
MGI|MGI:2144243 631 Clint1 "clathrin interactor 1" 0.501 0.236 0.426 2.7e-33
UNIPROTKB|F1RQF6 641 CLINT1 "Uncharacterized protei 0.501 0.232 0.426 3.1e-33
UNIPROTKB|F1NPP8 651 CLINT1 "Uncharacterized protei 0.538 0.245 0.422 7.2e-33
TAIR|locus:2181920 AT5G11710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 914 (326.8 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
 Identities = 186/240 (77%), Positives = 205/240 (85%)

Query:     1 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSE 60
             MDFMKVFDQTVREIKREVNLKVLKVPE+EQKVLDATDNEPWGPHGTALAEIAQATKKFSE
Sbjct:     1 MDFMKVFDQTVREIKREVNLKVLKVPEMEQKVLDATDNEPWGPHGTALAEIAQATKKFSE 60

Query:    61 CQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYV 120
             CQMVM+VLWTRL+ETGKDWRYVYKALAVI+YLIS+GSERAVD+IIEHT+QISSL+SFEYV
Sbjct:    61 CQMVMSVLWTRLSETGKDWRYVYKALAVIDYLISNGSERAVDEIIEHTYQISSLTSFEYV 120

Query:   121 EPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSSTGITYKSGS-ASF 179
             EP+GKD+GINVRKKAENIVALLNNK+KI E+R+KA ANR KY GLSSTGITYKSGS ASF
Sbjct:   121 EPNGKDVGINVRKKAENIVALLNNKEKISEIRDKAVANRNKYVGLSSTGITYKSGSSASF 180

Query:   180 GTXXXXXXXXXXXXXXNFRESYKDRDPYGEEKTGNDTFGKSRRGAASENQGNTLKKGFAR 239
             G               NF +SYKDRD   E+K   ++F KSRRG  +E Q  T KK F+R
Sbjct:   181 G-------GSFQSGSSNF-DSYKDRDSR-EDKNDYESFQKSRRGVKTEEQSYTSKKSFSR 231
GO:0005737 "cytoplasm" evidence=ISM
GO:0009579 "thylakoid" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005884 "actin filament" evidence=IDA
GO:0006623 "protein targeting to vacuole" evidence=IMP
GO:0030276 "clathrin binding" evidence=IDA
GO:0005543 "phospholipid binding" evidence=TAS
GO:0002020 "protease binding" evidence=IPI
GO:0006886 "intracellular protein transport" evidence=RCA
TAIR|locus:2040981 AT2G43160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081167 AT3G59290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291512 epnA "epsin" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1303328 Clint1 "clathrin interactor 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q14677 CLINT1 "Clathrin interactor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A7Z035 CLINT1 "Clathrin interactor 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2144243 Clint1 "clathrin interactor 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RQF6 CLINT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1NPP8 CLINT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VY07EPN1_ARATHNo assigned EC number0.72540.92590.4910yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
cd03571123 cd03571, ENTH_epsin, ENTH domain, Epsin family; Th 2e-62
pfam01417124 pfam01417, ENTH, ENTH domain 5e-54
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 2e-39
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 4e-10
pfam07651278 pfam07651, ANTH, ANTH domain 0.002
>gnl|CDD|239627 cd03571, ENTH_epsin, ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information 
 Score =  192 bits (491), Expect = 2e-62
 Identities = 63/123 (51%), Positives = 93/123 (75%)

Query: 27  EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKAL 86
           E E KV +AT N+PWGP GT +AEIA+AT  + E Q +M++LW RL + GK+WR+VYKAL
Sbjct: 1   EAELKVREATSNDPWGPSGTLMAEIARATYNYVEFQEIMSMLWKRLNDKGKNWRHVYKAL 60

Query: 87  AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKD 146
            ++EYL+ +GSER VDD  E+ + I +L  F+Y++ +GKD GINVR+KA+ I+ LL + +
Sbjct: 61  TLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREKAKEILELLEDDE 120

Query: 147 KIQ 149
           +++
Sbjct: 121 RLR 123

A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are universal components of the machinery for clathrin-mediated membrane budding. Length = 123
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain Back     alignment and domain information
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 297
KOG2056336 consensus Equilibrative nucleoside transporter pro 100.0
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 100.0
KOG2057 499 consensus Predicted equilibrative nucleoside trans 100.0
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 100.0
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 100.0
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 99.94
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.9
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.8
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 98.75
KOG0251 491 consensus Clathrin assembly protein AP180 and rela 98.34
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 98.14
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 97.7
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 97.7
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 97.68
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 97.65
cd03561133 VHS VHS domain family; The VHS domain is present i 97.63
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 97.44
KOG1087 470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 96.76
KOG2199 462 consensus Signal transducing adaptor protein STAM/ 93.8
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-57  Score=433.64  Aligned_cols=169  Identities=47%  Similarity=0.826  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHHhhhccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 022423            8 DQTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALA   87 (297)
Q Consensus         8 ~q~vr~lkr~v~n~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~   87 (297)
                      .+.++.++|+|+|+|++|+++|++|++||+||||||++++|+|||++||++.+|.+||.||||||++.|++||||||||+
T Consensus         2 ~~~~~~l~Rqakn~v~~y~~~e~kVrdAT~nd~wGPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaLt   81 (336)
T KOG2056|consen    2 TMSFRDLKRQAKNFIKNYSEAELKVRDATSNDPWGPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKALT   81 (336)
T ss_pred             cccHHHHHHHHHHHHhcchHHHHHHHhccccccCCCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccccC
Q 022423           88 VIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSS  167 (297)
Q Consensus        88 LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER~kAkk~R~Ki~G~sS  167 (297)
                      ||||||+||||+||+|||+|+++|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||.+|+++|.||.|++.
T Consensus        82 lleyLl~~GSErv~~~~ren~~~I~tL~~Fq~iD~~G~dqG~nVRkkak~l~~LL~D~erLkeeR~~a~~~r~k~~~~~~  161 (336)
T KOG2056|consen   82 LLEYLLKNGSERVVDETRENIYTIETLKDFQYIDEDGKDQGLNVRKKAKELLSLLEDDERLKEERKKARKTRTKFAGFGP  161 (336)
T ss_pred             HHHHHHhcCcHHHHHHHHhhhHHHHHHhhceeeCCCCccchHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCcCCCC
Q 022423          168 TGITYKSGS  176 (297)
Q Consensus       168 ~~~~~~s~s  176 (297)
                      .+..+.+++
T Consensus       162 ~~~~~~~~~  170 (336)
T KOG2056|consen  162 GSISNKSNS  170 (336)
T ss_pred             Ccccccccc
Confidence            766553333

>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
1h0a_A158 Epsin Enth Bound To Ins(1,4,5)p3 Length = 158 2e-30
1xgw_A176 The Crystal Structure Of Human Enthoprotin N-Termin 5e-30
1eyh_A144 Crystal Structure Of The Epsin N-Terminal Homology 6e-30
1inz_A148 Solution Structure Of The Epsin N-Terminal Homology 1e-29
2qy7_A147 Crystal Structure Of Human Epsinr Enth Domain Lengt 2e-29
3onk_A150 Yeast Ent3_enth Domain Length = 150 1e-27
1edu_A149 Crystal Structure Of The Enth Domain Of Rat Epsin 1 1e-27
>pdb|1H0A|A Chain A, Epsin Enth Bound To Ins(1,4,5)p3 Length = 158 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 96/148 (64%)
Query: 14  IKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLA 73
           ++R++   V    E E KV +AT N+PWGP  + ++EIA  T        +M+++W RL 
Sbjct: 6   LRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLN 65
Query: 74  ETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRK 133
           + GK+WR+VYKA+ ++EYLI  GSER      E+ + + +L  F+YV+  GKD G+NVR+
Sbjct: 66  DHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVRE 125
Query: 134 KAENIVALLNNKDKIQEVRNKASANREK 161
           KA+ +VALL ++D+++E R  A   +EK
Sbjct: 126 KAKQLVALLRDEDRLREERAHALKTKEK 153
>pdb|1XGW|A Chain A, The Crystal Structure Of Human Enthoprotin N-Terminal Domain Length = 176 Back     alignment and structure
>pdb|1EYH|A Chain A, Crystal Structure Of The Epsin N-Terminal Homology (Enth) Domain At 1.56 Angstrom Resolution Length = 144 Back     alignment and structure
>pdb|1INZ|A Chain A, Solution Structure Of The Epsin N-Terminal Homology (Enth) Domain Of Human Epsin Length = 148 Back     alignment and structure
>pdb|2QY7|A Chain A, Crystal Structure Of Human Epsinr Enth Domain Length = 147 Back     alignment and structure
>pdb|3ONK|A Chain A, Yeast Ent3_enth Domain Length = 150 Back     alignment and structure
>pdb|1EDU|A Chain A, Crystal Structure Of The Enth Domain Of Rat Epsin 1 Length = 149 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 3e-56
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 3e-54
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 4e-54
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 8e-50
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 3e-18
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 3e-17
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 2e-16
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 1e-12
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure
 Score =  177 bits (450), Expect = 3e-56
 Identities = 58/144 (40%), Positives = 93/144 (64%)

Query: 9   QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVL 68
            +   ++R++   V    E E KV +AT N+PWGP  + ++EIA  T        +M+++
Sbjct: 5   MSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMI 64

Query: 69  WTRLAETGKDWRYVYKALAVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMG 128
           W RL + GK+WR+VYKA+ ++EYLI  GSER      E+ + + +L  F+YV+  GKD G
Sbjct: 65  WKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQG 124

Query: 129 INVRKKAENIVALLNNKDKIQEVR 152
           +NVR+KA+ +VALL ++D+++E R
Sbjct: 125 VNVREKAKQLVALLRDEDRLREER 148
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Length = 176 Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Length = 150 Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Length = 140 Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 100.0
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 100.0
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 100.0
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 99.62
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 99.62
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 99.22
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 97.92
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 97.87
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 97.86
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 97.82
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 97.77
3g2s_A149 C-terminal fragment of sortilin-related receptor; 97.65
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 97.65
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 97.64
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 97.58
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
Probab=100.00  E-value=3.2e-61  Score=424.01  Aligned_cols=159  Identities=42%  Similarity=0.788  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHhhhccCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHh-hcCCCchHHHHHHHH
Q 022423            9 QTVREIKREVNLKVLKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRL-AETGKDWRYVYKALA   87 (297)
Q Consensus         9 q~vr~lkr~v~n~v~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL-~d~gk~WR~IyKaL~   87 (297)
                      +.|+.++|+|+|+|++|||+|++|+||||||||||++++|+|||++||++++|++||++||+|| .+.+++||||||||+
T Consensus        16 ~~~r~~~r~~kn~v~~ys~~E~kVreATnnd~wGPs~~~m~eIa~~T~~~~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~   95 (176)
T 1xgw_A           16 WKVRELVDKATNVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLL   95 (176)
T ss_dssp             ------------CCCCCCHHHHHHHHHTCSCSSCCCHHHHHHHHHHTTCTTTHHHHHHHHHHHHHSSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence            4678899999999999999999999999999999999999999999999999999999999996 778999999999999


Q ss_pred             HHHHHHHcCCHhHHHHHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhcccccccC
Q 022423           88 VIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLSS  167 (297)
Q Consensus        88 LLEYLLkNGservV~e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER~kAkk~R~Ki~G~sS  167 (297)
                      ||||||+||||+||+|+|+|++.|++|++|+|+|++|+|+|++||+||++|++||+|+++|++||++|+++|+||.|+||
T Consensus        96 LLeYLl~nGse~vv~~~r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D~e~Lr~eR~ka~k~r~k~~G~~s  175 (176)
T 1xgw_A           96 LLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYVGVSS  175 (176)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTCHHHHHHHHHHC------------
T ss_pred             HHHHHHHhCCHHHHHHHHHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 297
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 1e-47
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 4e-24
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 1e-23
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  154 bits (390), Expect = 1e-47
 Identities = 59/140 (42%), Positives = 91/140 (65%)

Query: 27  EIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKAL 86
           E E KV +AT N+PWGP  + ++EIA  T        +M+++W RL + GK+WR+VYKA+
Sbjct: 5   EAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAM 64

Query: 87  AVIEYLISHGSERAVDDIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKD 146
            ++EYLI  GSER      E+ + + +L  F+YV+  GKD G+NVR+KA+ +VALL ++D
Sbjct: 65  TLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDED 124

Query: 147 KIQEVRNKASANREKYFGLS 166
           +++E R  A   +EK    +
Sbjct: 125 RLREERAHALKTKEKLAQTA 144
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query297
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.89
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.88
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 97.98
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 97.85
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 97.79
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 97.52
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 97.38
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: ENTH domain
domain: Epsin 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.5e-46  Score=314.73  Aligned_cols=144  Identities=41%  Similarity=0.750  Sum_probs=140.9

Q ss_pred             cCCCHHHHHHHHhhCCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHcCCHhHHH
Q 022423           23 LKVPEIEQKVLDATDNEPWGPHGTALAEIAQATKKFSECQMVMNVLWTRLAETGKDWRYVYKALAVIEYLISHGSERAVD  102 (297)
Q Consensus        23 ~n~se~E~kVrEATsnDpWGPt~s~M~EIA~~T~~~~~~~~Im~vLwKRL~d~gk~WR~IyKaL~LLEYLLkNGservV~  102 (297)
                      .||||+|++|++|||+|+|||++++|.+|+++||++..|..||.+||+||.+++++||+|||||+||+|||+||+++||.
T Consensus         1 ~n~s~~e~~v~~ATs~d~~~p~~k~~~~I~~~t~~~~~~~~i~~~L~kRl~~~~k~Wrvv~K~L~ll~~Ll~~G~~~~v~   80 (144)
T d1eyha_           1 HNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQ   80 (144)
T ss_dssp             CCCCHHHHHHHHHTCSSSSCCCHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCCCHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHcCCHHHHH
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhcccceEEeCCCCCchhhHHHHHHHHHHHhhcChHHHHHHHHHHHHhhccccccc
Q 022423          103 DIIEHTFQISSLSSFEYVEPSGKDMGINVRKKAENIVALLNNKDKIQEVRNKASANREKYFGLS  166 (297)
Q Consensus       103 e~r~~i~~I~~L~~Fqy~d~~GkD~G~nVR~KAk~I~~LL~D~e~L~eER~kAkk~R~Ki~G~s  166 (297)
                      +++.|++.|+.|..|+|+|++|.|+|.+||++|+.|++||.|+++|++||.+|+++|+||.+++
T Consensus        81 ~~~~~~~~i~~l~~f~~~d~~g~d~g~~VR~kA~~l~~Ll~d~~~L~~eR~~a~~~r~k~~~~~  144 (144)
T d1eyha_          81 QCKENMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQTA  144 (144)
T ss_dssp             HHHHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhHHHHHhhhcCcccCccccchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999999999998753
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure