Citrus Sinensis ID: 022435


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
MDISGEQHLDVKHDIFKKRLDSQGNVIESRQDGIGAPKIDKPLQRHGGRLEHNETYCGSCYGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGVRWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGKFS
cccccccccccccccEEEEEcccccEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHccHHHHcccccccccEEEEEEEEEEEEEEEEEEcccccccccEEEEEEEccccccccccEEEEEEEccccccccccccccEEEEEEcccccEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEccccccccccEEEEEEEcccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
cccccccEEcccccEEEEEEcccccEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHccHHHHHHHHcccccEEEEEEEEEEEcccEEEcccccccccccEEEEcccccccccccEEEEEEEccccccccccccccccEEEccccccEEEEEEEEEEEEEEEccccEEEEcEEEEEEEEEcccccccccccEEEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
mdisgeqhlDVKHDIFKKRLdsqgnviesrqdgigapkidkplqrhggrlehnetycgscygaessdedccNNCEEVREAYRKKgwalsnpdlidqcKREGFLQRIKEeegegcniygflevnkvagnfhfapgksfhqsgvhvhdILAFQrdsfnishkinklafgehfpgvvnpldgvrwtqetpsgmyQYFIKVVPTvytdvsghtiqsnqfsvtEHFRsseqgrlqtlpgvfffydlspikvtfTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGKFS
mdisgeqhldVKHDIfkkrldsqgnviesrqdgigapkidkplqrhggrleHNETYCGSCYGAESSDEDCCNNCEEVREAYRKkgwalsnpdlidqCKREGFLQRIKEEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGVRWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKkieigkfs
MDISGEQHLDVKHDIFKKRLDSQGNVIESRQDGIGAPKIDKPLQRHGGRLEHNETYCGSCYGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGVRWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGKFS
***************************************************HNETYCGSCYGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGVRWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFR***QGRLQTLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIE*****
MDISGEQHLDVKHDIFKKRLDSQGNVIES**************************YCGSCYGAESSDEDCCNNCEEVREAYRKKGWALSNPDLID*****************GCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGVRWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTE***********TLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGK**
MDISGEQHLDVKHDIFKKRLDSQGNVIESRQDGIGAPKIDKPLQRHGGRLEHNETYCGSCYGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGVRWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGKFS
*****EQHLDVKHDIFKKRLDSQGNVIES*************************TYCGSCYGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGVRWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEI****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
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MDISGEQHLDVKHDIFKKRLDSQGNVIESRQDGIGAPKIDKPLQRHGGRLEHNETYCGSCYGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGVRWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGKFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query297 2.2.26 [Sep-21-2011]
Q9CQE7383 Endoplasmic reticulum-Gol yes no 0.979 0.759 0.569 6e-96
Q5EAE0383 Endoplasmic reticulum-Gol yes no 0.966 0.749 0.558 9e-95
Q9Y282383 Endoplasmic reticulum-Gol yes no 0.979 0.759 0.555 2e-94
Q5R8G3383 Endoplasmic reticulum-Gol yes no 0.979 0.759 0.552 5e-94
Q6NVS2384 Endoplasmic reticulum-Gol yes no 0.983 0.760 0.548 6e-94
Q66KH2389 Endoplasmic reticulum-Gol N/A no 0.983 0.750 0.549 1e-93
Q803I2383 Endoplasmic reticulum-Gol yes no 0.956 0.741 0.529 7e-93
Q4R8X1382 Endoplasmic reticulum-Gol N/A no 0.976 0.759 0.555 9e-93
Q54DW2383 Probable endoplasmic reti yes no 0.969 0.751 0.538 2e-85
Q09895390 Uncharacterized protein C yes no 0.932 0.710 0.362 8e-43
>sp|Q9CQE7|ERGI3_MOUSE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus GN=Ergic3 PE=2 SV=1 Back     alignment and function desciption
 Score =  350 bits (898), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 169/297 (56%), Positives = 218/297 (73%), Gaps = 6/297 (2%)

Query: 1   MDISGEQHLDVKHDIFKKRLDSQGNVIESRQDGIGAPKIDKPLQRHGGRLEHNETYCGSC 60
           MD++GEQ LDV+H++FKKRLD  G  + S  +     K++  +      L+ N   C SC
Sbjct: 89  MDVAGEQQLDVEHNLFKKRLDKDGVPVSSEAERHELGKVEVTV-FDPNSLDPNR--CESC 145

Query: 61  YGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFL 120
           YGAES D  CCN+CE+VREAYR++GWA  NPD I+QC+REGF Q+++E++ EGC +YGFL
Sbjct: 146 YGAESEDIKCCNSCEDVREAYRRRGWAFKNPDTIEQCRREGFSQKMQEQKNEGCQVYGFL 205

Query: 121 EVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGV 180
           EVNKVAGNFHFAPGKSF QS VHVHD+ +F  D+ N++H I  L+FGE +PG+VNPLD  
Sbjct: 206 EVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHYIKHLSFGEDYPGIVNPLDHT 265

Query: 181 RWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRL--QTLPGVFFF 238
             T    S M+QYF+KVVPTVY  V G  +++NQFSVT H + +  G L  Q LPGVF  
Sbjct: 266 NVTAPQASMMFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVA-NGLLGDQGLPGVFVL 324

Query: 239 YDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGK 295
           Y+LSP+ V  TE+H SF HFLT VCAI+GG+FTV+G+ID+ IYH  RAI+KKI++GK
Sbjct: 325 YELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 381




Possible role in transport between endoplasmic reticulum and Golgi.
Mus musculus (taxid: 10090)
>sp|Q5EAE0|ERGI3_BOVIN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Bos taurus GN=ERGIC3 PE=2 SV=1 Back     alignment and function description
>sp|Q9Y282|ERGI3_HUMAN Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Homo sapiens GN=ERGIC3 PE=1 SV=1 Back     alignment and function description
>sp|Q5R8G3|ERGI3_PONAB Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1 Back     alignment and function description
>sp|Q6NVS2|ERGI3_XENTR Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1 Back     alignment and function description
>sp|Q66KH2|ERGI3_XENLA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1 Back     alignment and function description
>sp|Q803I2|ERGI3_DANRE Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1 Back     alignment and function description
>sp|Q4R8X1|ERGI3_MACFA Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1 Back     alignment and function description
>sp|Q54DW2|ERGI3_DICDI Probable endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Dictyostelium discoideum GN=ergic3 PE=3 SV=1 Back     alignment and function description
>sp|Q09895|YAI8_SCHPO Uncharacterized protein C24B11.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.08c PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
255545672386 Endoplasmic reticulum-Golgi intermediate 1.0 0.769 0.915 1e-164
224082148386 predicted protein [Populus trichocarpa] 1.0 0.769 0.898 1e-162
356552872386 PREDICTED: endoplasmic reticulum-Golgi i 1.0 0.769 0.892 1e-161
356548103386 PREDICTED: endoplasmic reticulum-Golgi i 1.0 0.769 0.882 1e-160
225459342386 PREDICTED: endoplasmic reticulum-Golgi i 1.0 0.769 0.878 1e-160
357489473386 Endoplasmic reticulum-Golgi intermediate 1.0 0.769 0.865 1e-158
449465886386 PREDICTED: endoplasmic reticulum-Golgi i 1.0 0.769 0.875 1e-157
224066933377 predicted protein [Populus trichocarpa] 0.969 0.763 0.885 1e-156
297846654386 hypothetical protein ARALYDRAFT_891247 [ 1.0 0.769 0.855 1e-156
238478737386 Endoplasmic reticulum vesicle transporte 1.0 0.769 0.848 1e-154
>gi|255545672|ref|XP_002513896.1| Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis] gi|223546982|gb|EEF48479.1| Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 272/297 (91%), Positives = 290/297 (97%)

Query: 1   MDISGEQHLDVKHDIFKKRLDSQGNVIESRQDGIGAPKIDKPLQRHGGRLEHNETYCGSC 60
           MDISGEQHLDVKHDI KKRLDS GNVIE+RQDGIGAPKI+ PLQRHGGRLEHNETYCGSC
Sbjct: 90  MDISGEQHLDVKHDIIKKRLDSHGNVIEARQDGIGAPKIENPLQRHGGRLEHNETYCGSC 149

Query: 61  YGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFL 120
           YGAE+SDEDCCN+CE+VREAYRKKGWALSNPDLIDQCKREGFLQRIK+EEGEGCNIYGFL
Sbjct: 150 YGAEASDEDCCNSCEDVREAYRKKGWALSNPDLIDQCKREGFLQRIKDEEGEGCNIYGFL 209

Query: 121 EVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGV 180
           EVNKVAGNFHFAPGKSF QS VHVHD+LAFQ+DSFNISHKIN+LAFG++FPGVVNPLDGV
Sbjct: 210 EVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNISHKINRLAFGDYFPGVVNPLDGV 269

Query: 181 RWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPGVFFFYD 240
            WTQETPSGMYQYFIKVVPTVYTDVSG+TIQSNQFSVTEHFRS+E GRLQ+LPGVFFFYD
Sbjct: 270 HWTQETPSGMYQYFIKVVPTVYTDVSGYTIQSNQFSVTEHFRSAEAGRLQSLPGVFFFYD 329

Query: 241 LSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGKFS 297
           LSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGI+D+FIYHGQ+AIKKK+EIGKFS
Sbjct: 330 LSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKAIKKKMEIGKFS 386




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082148|ref|XP_002306582.1| predicted protein [Populus trichocarpa] gi|222856031|gb|EEE93578.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356552872|ref|XP_003544786.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356548103|ref|XP_003542443.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|225459342|ref|XP_002285801.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Vitis vinifera] gi|302141938|emb|CBI19141.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357489473|ref|XP_003615024.1| Endoplasmic reticulum-Golgi intermediate compartment protein [Medicago truncatula] gi|355516359|gb|AES97982.1| Endoplasmic reticulum-Golgi intermediate compartment protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449465886|ref|XP_004150658.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis sativus] gi|449518819|ref|XP_004166433.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224066933|ref|XP_002302286.1| predicted protein [Populus trichocarpa] gi|222844012|gb|EEE81559.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297846654|ref|XP_002891208.1| hypothetical protein ARALYDRAFT_891247 [Arabidopsis lyrata subsp. lyrata] gi|297337050|gb|EFH67467.1| hypothetical protein ARALYDRAFT_891247 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|238478737|ref|NP_001154394.1| Endoplasmic reticulum vesicle transporter protein [Arabidopsis thaliana] gi|12324714|gb|AAG52317.1|AC021666_6 unknown protein; 24499-21911 [Arabidopsis thaliana] gi|27808598|gb|AAO24579.1| At1g36050 [Arabidopsis thaliana] gi|110736190|dbj|BAF00066.1| hypothetical protein [Arabidopsis thaliana] gi|332193720|gb|AEE31841.1| Endoplasmic reticulum vesicle transporter protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query297
TAIR|locus:2034330 489 AT1G36050 "AT1G36050" [Arabido 0.986 0.599 0.846 8.6e-143
TAIR|locus:2015056386 AT1G22200 "AT1G22200" [Arabido 1.0 0.769 0.771 2.3e-133
MGI|MGI:1913616383 Ergic3 "ERGIC and golgi 3" [Mu 0.979 0.759 0.569 1.5e-90
UNIPROTKB|Q5EAE0383 ERGIC3 "Endoplasmic reticulum- 0.979 0.759 0.558 3.6e-89
UNIPROTKB|Q9Y282383 ERGIC3 "Endoplasmic reticulum- 0.979 0.759 0.558 4.6e-89
ZFIN|ZDB-GENE-040426-795383 ergic3 "ERGIC and golgi 3" [Da 0.986 0.765 0.541 2.9e-87
DICTYBASE|DDB_G0292002383 ergic3 "endoplasmic reticulum- 0.969 0.751 0.538 1.3e-82
FB|FBgn0036489373 CG7011 [Drosophila melanogaste 0.939 0.747 0.458 2.7e-61
WB|WBGene00010725380 erv-46 [Caenorhabditis elegans 0.959 0.75 0.415 3.6e-57
ASPGD|ASPL0000037804437 AN2738 [Emericella nidulans (t 0.579 0.393 0.374 1.8e-44
TAIR|locus:2034330 AT1G36050 "AT1G36050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1396 (496.5 bits), Expect = 8.6e-143, P = 8.6e-143
 Identities = 248/293 (84%), Positives = 276/293 (94%)

Query:     1 MDISGEQHLDVKHDIFKKRLDSQGNVIESRQDGIGAPKIDKPLQRHGGRLEHNETYCGSC 60
             MDISGE HLDVKHDI K+RLDS GN IE+RQDGIGA KI+ PLQ+HGGRL HNETYCGSC
Sbjct:    90 MDISGELHLDVKHDIIKRRLDSNGNTIEARQDGIGATKIENPLQKHGGRLGHNETYCGSC 149

Query:    61 YGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFL 120
             YGAE+ + DCCN+CE+VREAYRKKGW ++NPDLIDQCKREGFLQR+K+EEGEGCNIYGFL
Sbjct:   150 YGAEAEEHDCCNSCEDVREAYRKKGWGVTNPDLIDQCKREGFLQRVKDEEGEGCNIYGFL 209

Query:   121 EVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGV 180
             EVNKVAGNFHFAPGKSFHQSGVHVHD+LAFQ+DSFNISHKIN+L +G++FPGVVNPLD V
Sbjct:   210 EVNKVAGNFHFAPGKSFHQSGVHVHDLLAFQKDSFNISHKINRLTYGDYFPGVVNPLDKV 269

Query:   181 RWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPGVFFFYD 240
              W+Q+TP+ MYQYFIKVVPTVYTD+ GHTIQSNQFSVTEH +SSE G+LQ+LPGVFFFYD
Sbjct:   270 EWSQDTPNAMYQYFIKVVPTVYTDIRGHTIQSNQFSVTEHVKSSEAGQLQSLPGVFFFYD 329

Query:   241 LSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEI 293
             LSPIKVTFTEEH+SFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQ+AIKKK+EI
Sbjct:   330 LSPIKVTFTEEHISFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQKAIKKKMEI 382




GO:0003674 "molecular_function" evidence=ND
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2015056 AT1G22200 "AT1G22200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1913616 Ergic3 "ERGIC and golgi 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5EAE0 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y282 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-795 ergic3 "ERGIC and golgi 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292002 ergic3 "endoplasmic reticulum-golgi intermediate compartment protein 3" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0036489 CG7011 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00010725 erv-46 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ASPGD|ASPL0000037804 AN2738 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54DW2ERGI3_DICDINo assigned EC number0.53820.96960.7519yesno
Q5EAE0ERGI3_BOVINNo assigned EC number0.55810.96630.7493yesno
Q803I2ERGI3_DANRENo assigned EC number0.52920.95620.7415yesno
Q6NVS2ERGI3_XENTRNo assigned EC number0.54880.98310.7604yesno
Q9Y282ERGI3_HUMANNo assigned EC number0.55550.97970.7597yesno
Q9CQE7ERGI3_MOUSENo assigned EC number0.56900.97970.7597yesno
Q5R8G3ERGI3_PONABNo assigned EC number0.55210.97970.7597yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query297
pfam07970222 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum 1e-112
pfam13850105 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi In 1e-06
>gnl|CDD|219673 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle transporter Back     alignment and domain information
 Score =  322 bits (828), Expect = e-112
 Identities = 121/223 (54%), Positives = 154/223 (69%), Gaps = 6/223 (2%)

Query: 60  CYGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKE--EEGEGCNIY 117
           CYGAE ++  CCN CE+VREAY+KKGWA  + + I+QCKRE +++++K      EGC + 
Sbjct: 1   CYGAEDNNGKCCNTCEDVREAYKKKGWAFPDLENIEQCKRE-YVEKLKAQKNSNEGCRVK 59

Query: 118 GFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFP-GVVNP 176
           G LEVN+VAGNFH APG+SF + G HVHD+  F  +  N SH IN L+FGE FP GV NP
Sbjct: 60  GTLEVNRVAGNFHIAPGRSFQEKGGHVHDLSLFTDEKLNFSHTINHLSFGEEFPGGVTNP 119

Query: 177 LDGVRW--TQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPG 234
           LDG       +    MY YF+KVVPT Y  ++G  +++NQ+SVT H R    G    +PG
Sbjct: 120 LDGTTKFVQTDKGYHMYSYFLKVVPTRYESLNGLIVETNQYSVTSHDRPVTGGSRGGVPG 179

Query: 235 VFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIID 277
           VFF YD SPIKV  TE+  SF HFLTN+CAI+GGVF V+G+ID
Sbjct: 180 VFFNYDFSPIKVINTEDRQSFSHFLTNLCAIIGGVFAVAGLID 222


This family is conserved from plants and fungi to humans. Erv46 works in close conjunction with Erv41 and together they form a complex which cycles between the endoplasmic reticulum and Golgi complex. Erv46-41 interacts strongly with the endoplasmic reticulum glucosidase II. Mammalian glucosidase II comprises a catalytic alpha-subunit and a 58 kDa beta subunit, which is required for ER localisation. All proteins identified biochemically as Erv41p-Erv46p interactors are localised to the early secretory pathway and are involved in protein maturation and processing in the ER and/or sorting into COPII vesicles for transport to the Golgi. Length = 222

>gnl|CDD|206021 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 297
KOG2667379 consensus COPII vesicle protein [Intracellular tra 100.0
PF07970222 COPIIcoated_ERV: Endoplasmic reticulum vesicle tra 100.0
>KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
Probab=100.00  E-value=2e-82  Score=602.24  Aligned_cols=285  Identities=54%  Similarity=0.945  Sum_probs=256.8

Q ss_pred             CCcccceeccccCcEEEEeecCCCceeccccc--CCCCCCCCCcccccCCCccCCCCccCCCcCcCC---CCCccccchH
Q 022435            1 MDISGEQHLDVKHDIFKKRLDSQGNVIESRQD--GIGAPKIDKPLQRHGGRLEHNETYCGSCYGAES---SDEDCCNNCE   75 (297)
Q Consensus         1 ~D~sG~~~~dv~~~i~K~Rld~~G~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~CgsCYga~~---~~~~CCntCe   75 (297)
                      ||++|+.++|++++|+|.|||.  ++|+....  +....+...+        ..++.+|++||||+.   ....|||+|+
T Consensus        89 ~D~sg~~~l~i~~~i~k~rl~~--~~i~~~~~~~~~~~~k~~~p--------~~~~~~c~~~~~~~~~~~~~~~~~~~~~  158 (379)
T KOG2667|consen   89 MDVSGEMVLDIDHLIYKLRLDP--EPIPLTIRRFDIFQHKQTIP--------TTDPILCGLCYGAEDFNDGDIDCCNLCE  158 (379)
T ss_pred             eccccccccchhhhhhhcccCc--cccccchhhhcccccccccC--------CCCccchhhhhhhhccccccchhhhcch
Confidence            7999999999999999999999  55552111  1111110011        112468999999998   5788999999


Q ss_pred             HHHHHHHhcCCcCCCCCchhhhhhhchhhhhcccCCCcceEEEEEEEeeeeeeEEEccCCccccccceeeeeccccCCCc
Q 022435           76 EVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSF  155 (297)
Q Consensus        76 dV~~ay~~~gw~~~~~~~ieQC~~e~~~~~~~~~~~eGC~i~G~~~VnkV~Gnfhia~g~~~~~~~~h~hd~~~~~~~~~  155 (297)
                      +|++||+.+||++++.+.++||.++++..+.+.+.+|||||+|++.||||||||||+||++++..+.|+||...+  +.+
T Consensus       159 ~v~~a~~~~g~~~~~~~~~~q~~~~~~~~~~~~~~geGCRi~G~l~VNKVaGnfHia~g~~~~~~~~h~hd~~~~--~~~  236 (379)
T KOG2667|consen  159 DVREAYRKAGWDFADEDLIDQCKNEGFTNKAAEQKGEGCRIYGQLEVNKVAGNFHIAPGKSSQHSNAHVHDLSLL--DNL  236 (379)
T ss_pred             HHHHHhhhccccccCccchhhhcccccccccCCCCCCceEEEEEEEEeeecceEEEccCCCccccccccchhhhc--ccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998766  689


Q ss_pred             cccEEEeEeeecCCCCCCcCCCCCceeeeeCCceeEEEEEEEEEeEEEeCCCceEEeeeeeeEEEeeeccCCCCC-CCCE
Q 022435          156 NISHKINKLAFGEHFPGVVNPLDGVRWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQ-TLPG  234 (297)
Q Consensus       156 N~sH~I~~lsFG~~~~~~~~PLdg~~~~~~~~~~~~~YflkvVPT~y~~~~~~~~~t~QYSvt~~~~~~~~~~~~-~~Pg  234 (297)
                      ||||+|||||||+.+|+..|||||+.+++.++..||+||+|||||.|.+..|.++.|||||||+|++....+... ++||
T Consensus       237 n~SH~InhLSFG~~~p~~~nPLdG~~~~~~~~~~~~~Yf~KvVPT~y~~~~~~~~~T~QysVt~~~~~~~~~~~~~~~PG  316 (379)
T KOG2667|consen  237 NFSHRINHLSFGEYIPGIVNPLDGTNFIANEHLTTFQYFLKVVPTVYKYKSGRVIDTNQYSVTEYEYVLHSHRAKSGIPG  316 (379)
T ss_pred             CceEEEeeeccCCCCcccccCCCCccccccCCccceeeEEEEcceEEEeecCceecceeeeeeeeEEeccccccccCCCe
Confidence            999999999999999999999999999999999999999999999999999999999999999999998644444 9999


Q ss_pred             EEEEEeccceEEEEEeeeccHHHHHHHHhHhhcchhhHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 022435          235 VFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGKFS  297 (297)
Q Consensus       235 v~F~Yd~SPi~V~~~e~r~s~~~flt~lcAIiGGvftv~gliD~~~~~~~~~i~~k~~~gK~~  297 (297)
                      |||.||||||+|+++|+|+||+||||+||||||||||||||||+++|++++++++|.++||++
T Consensus       317 ifF~YelSPl~V~v~E~r~sf~~Flt~lCAIiGGvftvagiid~~~~~~~~~i~~k~~~gk~~  379 (379)
T KOG2667|consen  317 IFFKYELSPLMVKVTEERQSFSHFLTRLCAIIGGVFTVAGILDSLLYHILELIKGKIALGKYT  379 (379)
T ss_pred             EEEEEecCceEEEEEeccccHHHHHHHHHHHhcceeehHHHHHHHHHHHHHHHhcchhhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999974



>PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00