Citrus Sinensis ID: 022435
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 297 | ||||||
| 255545672 | 386 | Endoplasmic reticulum-Golgi intermediate | 1.0 | 0.769 | 0.915 | 1e-164 | |
| 224082148 | 386 | predicted protein [Populus trichocarpa] | 1.0 | 0.769 | 0.898 | 1e-162 | |
| 356552872 | 386 | PREDICTED: endoplasmic reticulum-Golgi i | 1.0 | 0.769 | 0.892 | 1e-161 | |
| 356548103 | 386 | PREDICTED: endoplasmic reticulum-Golgi i | 1.0 | 0.769 | 0.882 | 1e-160 | |
| 225459342 | 386 | PREDICTED: endoplasmic reticulum-Golgi i | 1.0 | 0.769 | 0.878 | 1e-160 | |
| 357489473 | 386 | Endoplasmic reticulum-Golgi intermediate | 1.0 | 0.769 | 0.865 | 1e-158 | |
| 449465886 | 386 | PREDICTED: endoplasmic reticulum-Golgi i | 1.0 | 0.769 | 0.875 | 1e-157 | |
| 224066933 | 377 | predicted protein [Populus trichocarpa] | 0.969 | 0.763 | 0.885 | 1e-156 | |
| 297846654 | 386 | hypothetical protein ARALYDRAFT_891247 [ | 1.0 | 0.769 | 0.855 | 1e-156 | |
| 238478737 | 386 | Endoplasmic reticulum vesicle transporte | 1.0 | 0.769 | 0.848 | 1e-154 |
| >gi|255545672|ref|XP_002513896.1| Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis] gi|223546982|gb|EEF48479.1| Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 272/297 (91%), Positives = 290/297 (97%)
Query: 1 MDISGEQHLDVKHDIFKKRLDSQGNVIESRQDGIGAPKIDKPLQRHGGRLEHNETYCGSC 60
MDISGEQHLDVKHDI KKRLDS GNVIE+RQDGIGAPKI+ PLQRHGGRLEHNETYCGSC
Sbjct: 90 MDISGEQHLDVKHDIIKKRLDSHGNVIEARQDGIGAPKIENPLQRHGGRLEHNETYCGSC 149
Query: 61 YGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFL 120
YGAE+SDEDCCN+CE+VREAYRKKGWALSNPDLIDQCKREGFLQRIK+EEGEGCNIYGFL
Sbjct: 150 YGAEASDEDCCNSCEDVREAYRKKGWALSNPDLIDQCKREGFLQRIKDEEGEGCNIYGFL 209
Query: 121 EVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGV 180
EVNKVAGNFHFAPGKSF QS VHVHD+LAFQ+DSFNISHKIN+LAFG++FPGVVNPLDGV
Sbjct: 210 EVNKVAGNFHFAPGKSFQQSNVHVHDLLAFQKDSFNISHKINRLAFGDYFPGVVNPLDGV 269
Query: 181 RWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPGVFFFYD 240
WTQETPSGMYQYFIKVVPTVYTDVSG+TIQSNQFSVTEHFRS+E GRLQ+LPGVFFFYD
Sbjct: 270 HWTQETPSGMYQYFIKVVPTVYTDVSGYTIQSNQFSVTEHFRSAEAGRLQSLPGVFFFYD 329
Query: 241 LSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGKFS 297
LSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGI+D+FIYHGQ+AIKKK+EIGKFS
Sbjct: 330 LSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDSFIYHGQKAIKKKMEIGKFS 386
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082148|ref|XP_002306582.1| predicted protein [Populus trichocarpa] gi|222856031|gb|EEE93578.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356552872|ref|XP_003544786.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356548103|ref|XP_003542443.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|225459342|ref|XP_002285801.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Vitis vinifera] gi|302141938|emb|CBI19141.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|357489473|ref|XP_003615024.1| Endoplasmic reticulum-Golgi intermediate compartment protein [Medicago truncatula] gi|355516359|gb|AES97982.1| Endoplasmic reticulum-Golgi intermediate compartment protein [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|449465886|ref|XP_004150658.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis sativus] gi|449518819|ref|XP_004166433.1| PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|224066933|ref|XP_002302286.1| predicted protein [Populus trichocarpa] gi|222844012|gb|EEE81559.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|297846654|ref|XP_002891208.1| hypothetical protein ARALYDRAFT_891247 [Arabidopsis lyrata subsp. lyrata] gi|297337050|gb|EFH67467.1| hypothetical protein ARALYDRAFT_891247 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|238478737|ref|NP_001154394.1| Endoplasmic reticulum vesicle transporter protein [Arabidopsis thaliana] gi|12324714|gb|AAG52317.1|AC021666_6 unknown protein; 24499-21911 [Arabidopsis thaliana] gi|27808598|gb|AAO24579.1| At1g36050 [Arabidopsis thaliana] gi|110736190|dbj|BAF00066.1| hypothetical protein [Arabidopsis thaliana] gi|332193720|gb|AEE31841.1| Endoplasmic reticulum vesicle transporter protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 297 | ||||||
| TAIR|locus:2034330 | 489 | AT1G36050 "AT1G36050" [Arabido | 0.986 | 0.599 | 0.846 | 8.6e-143 | |
| TAIR|locus:2015056 | 386 | AT1G22200 "AT1G22200" [Arabido | 1.0 | 0.769 | 0.771 | 2.3e-133 | |
| MGI|MGI:1913616 | 383 | Ergic3 "ERGIC and golgi 3" [Mu | 0.979 | 0.759 | 0.569 | 1.5e-90 | |
| UNIPROTKB|Q5EAE0 | 383 | ERGIC3 "Endoplasmic reticulum- | 0.979 | 0.759 | 0.558 | 3.6e-89 | |
| UNIPROTKB|Q9Y282 | 383 | ERGIC3 "Endoplasmic reticulum- | 0.979 | 0.759 | 0.558 | 4.6e-89 | |
| ZFIN|ZDB-GENE-040426-795 | 383 | ergic3 "ERGIC and golgi 3" [Da | 0.986 | 0.765 | 0.541 | 2.9e-87 | |
| DICTYBASE|DDB_G0292002 | 383 | ergic3 "endoplasmic reticulum- | 0.969 | 0.751 | 0.538 | 1.3e-82 | |
| FB|FBgn0036489 | 373 | CG7011 [Drosophila melanogaste | 0.939 | 0.747 | 0.458 | 2.7e-61 | |
| WB|WBGene00010725 | 380 | erv-46 [Caenorhabditis elegans | 0.959 | 0.75 | 0.415 | 3.6e-57 | |
| ASPGD|ASPL0000037804 | 437 | AN2738 [Emericella nidulans (t | 0.579 | 0.393 | 0.374 | 1.8e-44 |
| TAIR|locus:2034330 AT1G36050 "AT1G36050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1396 (496.5 bits), Expect = 8.6e-143, P = 8.6e-143
Identities = 248/293 (84%), Positives = 276/293 (94%)
Query: 1 MDISGEQHLDVKHDIFKKRLDSQGNVIESRQDGIGAPKIDKPLQRHGGRLEHNETYCGSC 60
MDISGE HLDVKHDI K+RLDS GN IE+RQDGIGA KI+ PLQ+HGGRL HNETYCGSC
Sbjct: 90 MDISGELHLDVKHDIIKRRLDSNGNTIEARQDGIGATKIENPLQKHGGRLGHNETYCGSC 149
Query: 61 YGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFL 120
YGAE+ + DCCN+CE+VREAYRKKGW ++NPDLIDQCKREGFLQR+K+EEGEGCNIYGFL
Sbjct: 150 YGAEAEEHDCCNSCEDVREAYRKKGWGVTNPDLIDQCKREGFLQRVKDEEGEGCNIYGFL 209
Query: 121 EVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFPGVVNPLDGV 180
EVNKVAGNFHFAPGKSFHQSGVHVHD+LAFQ+DSFNISHKIN+L +G++FPGVVNPLD V
Sbjct: 210 EVNKVAGNFHFAPGKSFHQSGVHVHDLLAFQKDSFNISHKINRLTYGDYFPGVVNPLDKV 269
Query: 181 RWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPGVFFFYD 240
W+Q+TP+ MYQYFIKVVPTVYTD+ GHTIQSNQFSVTEH +SSE G+LQ+LPGVFFFYD
Sbjct: 270 EWSQDTPNAMYQYFIKVVPTVYTDIRGHTIQSNQFSVTEHVKSSEAGQLQSLPGVFFFYD 329
Query: 241 LSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEI 293
LSPIKVTFTEEH+SFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQ+AIKKK+EI
Sbjct: 330 LSPIKVTFTEEHISFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQKAIKKKMEI 382
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| TAIR|locus:2015056 AT1G22200 "AT1G22200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| MGI|MGI:1913616 Ergic3 "ERGIC and golgi 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q5EAE0 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y282 ERGIC3 "Endoplasmic reticulum-Golgi intermediate compartment protein 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040426-795 ergic3 "ERGIC and golgi 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0292002 ergic3 "endoplasmic reticulum-golgi intermediate compartment protein 3" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| FB|FBgn0036489 CG7011 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| WB|WBGene00010725 erv-46 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| ASPGD|ASPL0000037804 AN2738 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 297 | |||
| pfam07970 | 222 | pfam07970, COPIIcoated_ERV, Endoplasmic reticulum | 1e-112 | |
| pfam13850 | 105 | pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi In | 1e-06 |
| >gnl|CDD|219673 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle transporter | Back alignment and domain information |
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Score = 322 bits (828), Expect = e-112
Identities = 121/223 (54%), Positives = 154/223 (69%), Gaps = 6/223 (2%)
Query: 60 CYGAESSDEDCCNNCEEVREAYRKKGWALSNPDLIDQCKREGFLQRIKE--EEGEGCNIY 117
CYGAE ++ CCN CE+VREAY+KKGWA + + I+QCKRE +++++K EGC +
Sbjct: 1 CYGAEDNNGKCCNTCEDVREAYKKKGWAFPDLENIEQCKRE-YVEKLKAQKNSNEGCRVK 59
Query: 118 GFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSFNISHKINKLAFGEHFP-GVVNP 176
G LEVN+VAGNFH APG+SF + G HVHD+ F + N SH IN L+FGE FP GV NP
Sbjct: 60 GTLEVNRVAGNFHIAPGRSFQEKGGHVHDLSLFTDEKLNFSHTINHLSFGEEFPGGVTNP 119
Query: 177 LDGVRW--TQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQTLPG 234
LDG + MY YF+KVVPT Y ++G +++NQ+SVT H R G +PG
Sbjct: 120 LDGTTKFVQTDKGYHMYSYFLKVVPTRYESLNGLIVETNQYSVTSHDRPVTGGSRGGVPG 179
Query: 235 VFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIID 277
VFF YD SPIKV TE+ SF HFLTN+CAI+GGVF V+G+ID
Sbjct: 180 VFFNYDFSPIKVINTEDRQSFSHFLTNLCAIIGGVFAVAGLID 222
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This family is conserved from plants and fungi to humans. Erv46 works in close conjunction with Erv41 and together they form a complex which cycles between the endoplasmic reticulum and Golgi complex. Erv46-41 interacts strongly with the endoplasmic reticulum glucosidase II. Mammalian glucosidase II comprises a catalytic alpha-subunit and a 58 kDa beta subunit, which is required for ER localisation. All proteins identified biochemically as Erv41p-Erv46p interactors are localised to the early secretory pathway and are involved in protein maturation and processing in the ER and/or sorting into COPII vesicles for transport to the Golgi. Length = 222 |
| >gnl|CDD|206021 pfam13850, ERGIC_N, Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 297 | |||
| KOG2667 | 379 | consensus COPII vesicle protein [Intracellular tra | 100.0 | |
| PF07970 | 222 | COPIIcoated_ERV: Endoplasmic reticulum vesicle tra | 100.0 |
| >KOG2667 consensus COPII vesicle protein [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-82 Score=602.24 Aligned_cols=285 Identities=54% Similarity=0.945 Sum_probs=256.8
Q ss_pred CCcccceeccccCcEEEEeecCCCceeccccc--CCCCCCCCCcccccCCCccCCCCccCCCcCcCC---CCCccccchH
Q 022435 1 MDISGEQHLDVKHDIFKKRLDSQGNVIESRQD--GIGAPKIDKPLQRHGGRLEHNETYCGSCYGAES---SDEDCCNNCE 75 (297)
Q Consensus 1 ~D~sG~~~~dv~~~i~K~Rld~~G~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~CgsCYga~~---~~~~CCntCe 75 (297)
||++|+.++|++++|+|.|||. ++|+.... +....+...+ ..++.+|++||||+. ....|||+|+
T Consensus 89 ~D~sg~~~l~i~~~i~k~rl~~--~~i~~~~~~~~~~~~k~~~p--------~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 158 (379)
T KOG2667|consen 89 MDVSGEMVLDIDHLIYKLRLDP--EPIPLTIRRFDIFQHKQTIP--------TTDPILCGLCYGAEDFNDGDIDCCNLCE 158 (379)
T ss_pred eccccccccchhhhhhhcccCc--cccccchhhhcccccccccC--------CCCccchhhhhhhhccccccchhhhcch
Confidence 7999999999999999999999 55552111 1111110011 112468999999998 5788999999
Q ss_pred HHHHHHHhcCCcCCCCCchhhhhhhchhhhhcccCCCcceEEEEEEEeeeeeeEEEccCCccccccceeeeeccccCCCc
Q 022435 76 EVREAYRKKGWALSNPDLIDQCKREGFLQRIKEEEGEGCNIYGFLEVNKVAGNFHFAPGKSFHQSGVHVHDILAFQRDSF 155 (297)
Q Consensus 76 dV~~ay~~~gw~~~~~~~ieQC~~e~~~~~~~~~~~eGC~i~G~~~VnkV~Gnfhia~g~~~~~~~~h~hd~~~~~~~~~ 155 (297)
+|++||+.+||++++.+.++||.++++..+.+.+.+|||||+|++.||||||||||+||++++..+.|+||...+ +.+
T Consensus 159 ~v~~a~~~~g~~~~~~~~~~q~~~~~~~~~~~~~~geGCRi~G~l~VNKVaGnfHia~g~~~~~~~~h~hd~~~~--~~~ 236 (379)
T KOG2667|consen 159 DVREAYRKAGWDFADEDLIDQCKNEGFTNKAAEQKGEGCRIYGQLEVNKVAGNFHIAPGKSSQHSNAHVHDLSLL--DNL 236 (379)
T ss_pred HHHHHhhhccccccCccchhhhcccccccccCCCCCCceEEEEEEEEeeecceEEEccCCCccccccccchhhhc--ccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998766 689
Q ss_pred cccEEEeEeeecCCCCCCcCCCCCceeeeeCCceeEEEEEEEEEeEEEeCCCceEEeeeeeeEEEeeeccCCCCC-CCCE
Q 022435 156 NISHKINKLAFGEHFPGVVNPLDGVRWTQETPSGMYQYFIKVVPTVYTDVSGHTIQSNQFSVTEHFRSSEQGRLQ-TLPG 234 (297)
Q Consensus 156 N~sH~I~~lsFG~~~~~~~~PLdg~~~~~~~~~~~~~YflkvVPT~y~~~~~~~~~t~QYSvt~~~~~~~~~~~~-~~Pg 234 (297)
||||+|||||||+.+|+..|||||+.+++.++..||+||+|||||.|.+..|.++.|||||||+|++....+... ++||
T Consensus 237 n~SH~InhLSFG~~~p~~~nPLdG~~~~~~~~~~~~~Yf~KvVPT~y~~~~~~~~~T~QysVt~~~~~~~~~~~~~~~PG 316 (379)
T KOG2667|consen 237 NFSHRINHLSFGEYIPGIVNPLDGTNFIANEHLTTFQYFLKVVPTVYKYKSGRVIDTNQYSVTEYEYVLHSHRAKSGIPG 316 (379)
T ss_pred CceEEEeeeccCCCCcccccCCCCccccccCCccceeeEEEEcceEEEeecCceecceeeeeeeeEEeccccccccCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999998644444 9999
Q ss_pred EEEEEeccceEEEEEeeeccHHHHHHHHhHhhcchhhHHHHHHHHHHHHHHHhhhhhhcCCCC
Q 022435 235 VFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGIIDAFIYHGQRAIKKKIEIGKFS 297 (297)
Q Consensus 235 v~F~Yd~SPi~V~~~e~r~s~~~flt~lcAIiGGvftv~gliD~~~~~~~~~i~~k~~~gK~~ 297 (297)
|||.||||||+|+++|+|+||+||||+||||||||||||||||+++|++++++++|.++||++
T Consensus 317 ifF~YelSPl~V~v~E~r~sf~~Flt~lCAIiGGvftvagiid~~~~~~~~~i~~k~~~gk~~ 379 (379)
T KOG2667|consen 317 IFFKYELSPLMVKVTEERQSFSHFLTRLCAIIGGVFTVAGILDSLLYHILELIKGKIALGKYT 379 (379)
T ss_pred EEEEEecCceEEEEEeccccHHHHHHHHHHHhcceeehHHHHHHHHHHHHHHHhcchhhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999974
|
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| >PF07970 COPIIcoated_ERV: Endoplasmic reticulum vesicle transporter ; InterPro: IPR012936 This domain occurs in many hypothetical proteins, and also two partially characterised proteins | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00