Citrus Sinensis ID: 022450

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKVLQVY
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEEccEEEEEEcccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEcccEEEEEEcccccccHHHHEEEEccccccccccccEcccccEEEcccccccEccccccccccccccccccccccccccccccccccHHHHHcccHHcHHHHHHHHHHcHHcccHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHccccHHHcccccccccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msacsstfrlpnlpnispqnhnivmPTTVFLSLrhstatnpalcklqcvgnnfdstpktieipgkiteesadceprihssggdggagdspggggggggdsgggggdgegndgeekefgpilKFEEVMKEIELkgvglpddMMEAAKTVGIRKMFLLRYLDLqgsvwplgFLMRYCFMLRdrmladpsflfkvGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGmlapyarigqpsassglfGRIQnacgslpssvfeaerpgcrfsvKQRIATYFYKVLQVY
Flexible Loop (DISEMBL)
msacsstfrlpnlpnispqnhNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELkgvglpddmMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKVLQVY
Low Complexity Region (SEG)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHssggdggagdspggggggggdsgggggdgegndgEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKVLQVY
Disordered region (IsUnstruct)
********************HNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDS***************************************************************PILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKVLQV*
Disordered Region (DISOPRED)
******T*RLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTI***********************************************************ILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYA**************IQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKVLQVY
Disordered Region (DISEMBL)
********RLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKVLQVY
Disordered Region (DISPRO)
******TFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSS*GDGGA************************D*EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKVLQVY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKVLQVY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
15242979	433	protein reticulata-related 1 [Arabidopsi	0.619	0.424	0.805	2e-83
297812405	434	hypothetical protein ARALYDRAFT_326573 [	0.619	0.423	0.805	3e-83
255573012	419	conserved hypothetical protein [Ricinus	0.599	0.424	0.803	5e-83
225440504	443	PREDICTED: uncharacterized protein LOC10	0.606	0.406	0.794	5e-81
359479472	409	PREDICTED: uncharacterized protein LOC10	0.602	0.437	0.804	4e-80
356523205	443	PREDICTED: uncharacterized protein LOC10	0.606	0.406	0.772	2e-79
356566573	443	PREDICTED: uncharacterized protein LOC10	0.606	0.406	0.766	3e-79
224103009	278	predicted protein [Populus trichocarpa]	0.558	0.597	0.843	3e-78
449440303	439	PREDICTED: uncharacterized protein LOC10	0.606	0.410	0.755	9e-78
356565715	386	PREDICTED: uncharacterized protein LOC10	0.599	0.461	0.758	5e-77

>gi|15242979|ref|NP_197671.1| protein reticulata-related 1 [Arabidopsis thaliana] gi|13605899|gb|AAK32935.1|AF367348_1 AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|9758754|dbj|BAB09278.1| unnamed protein product [Arabidopsis thaliana] gi|19548025|gb|AAL87376.1| AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|332005693|gb|AED93076.1| protein reticulata-related 1 [Arabidopsis thaliana]

 Score =  315 bits (807), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/185 (80%), Positives = 167/185 (90%), Gaps = 1/185 (0%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPL
Sbjct: 137 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPL 196

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLV 228
           GFLMR C MLR+RMLADPSFLFKVGTE+ IDSCCAT AE QKRG+DFWSEFELY ADLLV
Sbjct: 197 GFLMRSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLV 256

Query: 229 GLVVDIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIA 287
           GLVVD+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPSSVFEAERPGC+FSV QRIA
Sbjct: 257 GLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIA 316

Query: 288 TYFYK 292
           T+FYK
Sbjct: 317 TFFYK 321

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812405|ref|XP_002874086.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata] gi|297319923|gb|EFH50345.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 149/185 (80%), Positives = 167/185 (90%), Gaps = 1/185 (0%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VG+RK+FLLRYLDLQGSVWPL
Sbjct: 138 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGLRKLFLLRYLDLQGSVWPL 197

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLV 228
           GFLMR C MLR+RMLADPSFLFKVGTEI IDSCCAT AE QKRG+DFWSEFELY ADLLV
Sbjct: 198 GFLMRSCAMLRNRMLADPSFLFKVGTEIAIDSCCATFAEVQKRGEDFWSEFELYAADLLV 257

Query: 229 GLVVDIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIA 287
           GLVVD+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPSSVFEAERPGC+FSV QRIA
Sbjct: 258 GLVVDVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIA 317

Query: 288 TYFYK 292
           T+FYK
Sbjct: 318 TFFYK 322

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573012|ref|XP_002527436.1| conserved hypothetical protein [Ricinus communis] gi|223533171|gb|EEF34928.1| conserved hypothetical protein [Ricinus communis]

 Score =  313 bits (803), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 143/178 (80%), Positives = 160/178 (89%)

Query: 115 KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY 174
           KEFGPI+++E+++KE E +GV LP DM+EAAKT GIR++F+LRYLDLQGSVWPLGFLM+Y
Sbjct: 102 KEFGPIMRYEQIIKEAETRGVQLPHDMIEAAKTTGIRQLFVLRYLDLQGSVWPLGFLMKY 161

Query: 175 CFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDI 234
           C MLR+RMLADPSFLFKVGTEIVIDSCCAT AE  KRGKDFWSEFELY ADLLVG+VVDI
Sbjct: 162 CTMLRNRMLADPSFLFKVGTEIVIDSCCATFAEVHKRGKDFWSEFELYAADLLVGIVVDI 221

Query: 235 ALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           ALV MLAPYARIG PS  SGL G +Q AC +LPSSVFEAERPGC+FSVKQRIATYFYK
Sbjct: 222 ALVAMLAPYARIGWPSVKSGLLGNLQQACAALPSSVFEAERPGCKFSVKQRIATYFYK 279

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440504|ref|XP_002272506.1| PREDICTED: uncharacterized protein LOC100264910 [Vitis vinifera]

 Score =  306 bits (785), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 143/180 (79%), Positives = 160/180 (88%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPIL FEEVM+E + +G  LP DM+ AAK+VGIRK+ LLRYLDLQGSVWPLGF M
Sbjct: 152 EEEEFGPILSFEEVMREAQARGASLPSDMLTAAKSVGIRKILLLRYLDLQGSVWPLGFAM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           + C MLR+RMLADPSFLFK+GTEIVIDSCCAT AE QKRGKDFW+EFELY ADLLVG+VV
Sbjct: 212 KSCSMLRNRMLADPSFLFKIGTEIVIDSCCATFAEVQKRGKDFWAEFELYTADLLVGVVV 271

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           +IALVGMLAPYARIGQPS S G  G +Q+A G+LPSSVFEAERPGCRFSVKQRIATYF+K
Sbjct: 272 NIALVGMLAPYARIGQPSISKGFLGHLQHAYGALPSSVFEAERPGCRFSVKQRIATYFFK 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479472|ref|XP_003632277.1| PREDICTED: uncharacterized protein LOC100854755 [Vitis vinifera]

 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 144/179 (80%), Positives = 157/179 (87%)

Query: 114 EKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMR 173
           E+EFG ILKFEEVM+E E +G  LP DM EAAKT GIR++ L RYLDLQGSVWPLGF M+
Sbjct: 119 EEEFGRILKFEEVMREAENRGASLPSDMWEAAKTTGIREVILFRYLDLQGSVWPLGFGMK 178

Query: 174 YCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVD 233
           +  MLR+RMLADPSFLFKVGTE+VIDSCCAT AE QKRGKDFW+EFELY ADLLVG+VVD
Sbjct: 179 HFSMLRNRMLADPSFLFKVGTEVVIDSCCATFAEVQKRGKDFWAEFELYAADLLVGVVVD 238

Query: 234 IALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           IALVGMLAPY R GQPS S GL GRIQ+AC +LPSSVFEAERPGCRFSVKQRIATYFYK
Sbjct: 239 IALVGMLAPYTRFGQPSISRGLVGRIQHACAALPSSVFEAERPGCRFSVKQRIATYFYK 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523205|ref|XP_003530232.1| PREDICTED: uncharacterized protein LOC100780872 [Glycine max]

 Score =  301 bits (772), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/180 (77%), Positives = 161/180 (89%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           + C MLR+RMLADP+FLFK+G+EIVID+CCAT AE QKRGKDFW+EFELYLADLLVGLVV
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEIVIDTCCATFAEIQKRGKDFWAEFELYLADLLVGLVV 271

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           ++ALVGMLAPYARIG+PS SSG  GR+Q A  +LPSSVFEAERPGCRFSV+QR+ TYFYK
Sbjct: 272 NVALVGMLAPYARIGKPSISSGFLGRMQKAYAALPSSVFEAERPGCRFSVQQRLGTYFYK 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566573|ref|XP_003551505.1| PREDICTED: uncharacterized protein LOC100783806 [Glycine max]

 Score =  301 bits (770), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 138/180 (76%), Positives = 161/180 (89%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           + C MLR+RMLADP+FLFK+G+EIVID+CCAT AE QKRGKDFW+EFELYLADLLVGLVV
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEIVIDTCCATFAEIQKRGKDFWAEFELYLADLLVGLVV 271

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           ++ALVGMLAPYAR+G+PS SSG  GR+Q A  +LPSSVFEAERPGCRFSV+QR+ TYFYK
Sbjct: 272 NVALVGMLAPYARLGKPSISSGFLGRMQKAYAALPSSVFEAERPGCRFSVQQRLGTYFYK 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103009|ref|XP_002312888.1| predicted protein [Populus trichocarpa] gi|222849296|gb|EEE86843.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (761), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 140/166 (84%), Positives = 151/166 (90%)

Query: 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADP 186
           MKEIE +GV LP DMMEAAK++GIRKMFLLRYLDLQGS WPLGFLM+YC MLR+RMLADP
Sbjct: 1   MKEIEARGVELPADMMEAAKSIGIRKMFLLRYLDLQGSAWPLGFLMKYCTMLRNRMLADP 60

Query: 187 SFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARI 246
           SFLFKVGTEIVIDSCCAT AE QKRGKDFWSEFELY ADLLVG+VVD ALVG+LAPYARI
Sbjct: 61  SFLFKVGTEIVIDSCCATFAEVQKRGKDFWSEFELYAADLLVGIVVDFALVGLLAPYARI 120

Query: 247 GQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           G+P+ S GLFG IQ AC +LPSSVFEAERPGC+FSVKQR ATYFYK
Sbjct: 121 GKPAVSGGLFGSIQQACAALPSSVFEAERPGCKFSVKQRTATYFYK 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440303|ref|XP_004137924.1| PREDICTED: uncharacterized protein LOC101202748 [Cucumis sativus] gi|449483677|ref|XP_004156657.1| PREDICTED: uncharacterized protein LOC101226426 [Cucumis sativus]

 Score =  296 bits (757), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 136/180 (75%), Positives = 158/180 (87%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPI+KFEEVMKE+E +GV LP DM+EAAK+ GIRK+ LLRYL++QG  WPLGFLM
Sbjct: 148 EEEEFGPIMKFEEVMKELESRGVTLPSDMLEAAKSEGIRKLLLLRYLEMQGLGWPLGFLM 207

Query: 173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
           R C M+R+R+LADPSF FKVG E+VIDSCCAT AE QKRGKDFW+EFELYLAD+LVG+ V
Sbjct: 208 RSCAMIRNRVLADPSFFFKVGVELVIDSCCATFAEVQKRGKDFWTEFELYLADILVGVAV 267

Query: 233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           + ALV +LAPYAR GQPS S G  GRIQ+AC +LPSSVFEAERPGCRFSV+QRIAT+FYK
Sbjct: 268 NFALVALLAPYARFGQPSVSKGFLGRIQHACEALPSSVFEAERPGCRFSVQQRIATFFYK 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565715|ref|XP_003551083.1| PREDICTED: uncharacterized protein LOC100799853 [Glycine max]

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 135/178 (75%), Positives = 160/178 (89%)

Query: 115 KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY 174
           +EFGP+LKFE VM+E + +GV LP DM EAA+  GIR+MFLLRY++LQGS WP+ FL+++
Sbjct: 97  EEFGPLLKFEAVMRESKARGVKLPPDMEEAARITGIREMFLLRYMELQGSSWPVSFLIQH 156

Query: 175 CFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDI 234
           C MLR+RMLADPSFLFKVGTEIVIDSCCATLAE QKRGK+FW+EFELY ADLLVG+VVDI
Sbjct: 157 CAMLRNRMLADPSFLFKVGTEIVIDSCCATLAEVQKRGKNFWAEFELYAADLLVGVVVDI 216

Query: 235 ALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           ALVG+LAPYARIG+PS S GL G+IQ+AC +LPSSVFEAERPGC+FSV QR++TYFYK
Sbjct: 217 ALVGLLAPYARIGKPSFSKGLLGQIQHACAALPSSVFEAERPGCKFSVMQRVSTYFYK 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:2158155	433	RER1 "AT5G22790" [Arabidopsis	0.612	0.420	0.819	6.2e-78
TAIR|locus:2065649	432	LCD1 "AT2G37860" [Arabidopsis	0.606	0.416	0.761	6.3e-69
TAIR|locus:505006615	386	AT5G12470 "AT5G12470" [Arabido	0.528	0.406	0.279	8e-11
TAIR|locus:2078446	745	AT3G56140 "AT3G56140" [Arabido	0.505	0.201	0.256	1.7e-06
TAIR|locus:2063136	735	AT2G40400 [Arabidopsis thalian	0.505	0.204	0.25	2.8e-06
TAIR|locus:2176826	521	AT5G24690 "AT5G24690" [Arabido	0.373	0.213	0.310	2.4e-05
TAIR|locus:2077838	337	AT3G08640 "AT3G08640" [Arabido	0.397	0.350	0.315	0.00013

TAIR|locus:2158155 RER1 "AT5G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
 Identities = 150/183 (81%), Positives = 167/183 (91%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPLGFLM
Sbjct:   141 EEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLM 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
             R C MLR+RMLADPSFLFKVGTE+ IDSCCAT AE QKRG+DFWSEFELY ADLLVGLVV
Sbjct:   201 RSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAADLLVGLVV 260

Query:   233 DIALVGMLAPYARIGQPS-ASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFY 291
             D+ALVG+LAPYARIG+PS AS+GLF  ++ AC SLPSSVFEAERPGC+FSV QRIAT+FY
Sbjct:   261 DVALVGLLAPYARIGKPSVASTGLFKDLKRACASLPSSVFEAERPGCKFSVNQRIATFFY 320

Query:   292 KVL 294
             K L
Sbjct:   321 KGL 323

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2065649 LCD1 "AT2G37860" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 137/180 (76%), Positives = 151/180 (83%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G  LP DM+EAAK  GIRK+ LLRYLDLQ S   LGF +
Sbjct:   141 EEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAI 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVV 232
             R   MLR+RMLADPSFLFK+G EIVIDSCCAT+AE QKRGKDFW+EFELY+ADLLVG VV
Sbjct:   201 RSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDFWAEFELYVADLLVGTVV 260

Query:   233 DIALVGMLAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
             +IALVGMLAPY R GQPSAS G  GR+  A  +LPSSVFEAERPGCRFS +QR+ATYFYK
Sbjct:   261 NIALVGMLAPYVRFGQPSASPGFLGRMVFAYNALPSSVFEAERPGCRFSAQQRLATYFYK 320

GO:0003674 "molecular_function" evidence=ND

GO:0048366 "leaf development" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:505006615 AT5G12470 "AT5G12470" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 8.0e-11, P = 8.0e-11
 Identities = 45/161 (27%), Positives = 85/161 (52%)

Query:   126 VMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLAD 185
             ++KE  ++   LP D+  A +   I    + R+L+LQ S   + +LM++    R+R+LAD
Sbjct:   108 LLKESGIELESLPKDLAAAIEAGRIPGSVITRFLELQKSA-VMRWLMQFGGF-RERLLAD 165

Query:   186 PSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYAR 245
               F+ K+  E  +     T AE+++R ++F++E E+  AD+ + ++ D  LV + AP   
Sbjct:   166 DLFMAKLAMECGVGIFTKTAAEYERRRENFFNELEVVFADVAMAIIADFMLVYLPAPTVS 225

Query:   246 IGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRI 286
             +  P A +   G I     + P + F+    G  +++ QR+
Sbjct:   226 LRPPLALTA--GGISKFFHNCPDNAFQVALSGTSYTLLQRL 264

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2078446 AT3G56140 "AT3G56140" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 40/156 (25%), Positives = 71/156 (45%)

Query:   137 LPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFM-LRDRMLADPSFLFKVGTE 195
             LP D+        +    L    DL+   +PL   +   F   R+R+LADP FL ++  E
Sbjct:   437 LPPDIQNGLDLGLVSPEVLQNLFDLEQ--YPLISELTQRFQGFRERLLADPKFLNRLAIE 494

Query:   196 IVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAP---YARIGQPSAS 252
               I      +A+++KR ++F+ E +  + D + G VVD   V + AP   +      +  
Sbjct:   495 EAISITTTLIAQYEKRKENFFEEIDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADETTG 554

Query:   253 SGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIAT 288
                   ++   GS+P + F+    G  +++  RIA+
Sbjct:   555 PDSIDALRGLLGSIPDNAFQKSLAGREWNLNLRIAS 590

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

TAIR|locus:2063136 AT2G40400 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 39/156 (25%), Positives = 72/156 (46%)

Query:   137 LPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFM-LRDRMLADPSFLFKVGTE 195
             LP D+ +      +    L  + DL+   +PL   +   F   R+R+LADP FL ++  E
Sbjct:   428 LPQDIQKGLDLGLVSPEILQNFFDLEQ--YPLISELTQRFQGFRERLLADPKFLNRLAIE 485

Query:   196 IVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAP---YARIGQPSAS 252
               I      +A+++KR ++F+ E +  + D +   VVD   V + AP   +      +  
Sbjct:   486 EAISITTTLVAQYEKRKENFFEELDYVITDSVRASVVDFFTVWLPAPTLSFISYADETIG 545

Query:   253 SGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIAT 288
                   ++   GS+P + F+    G  +++  RIA+
Sbjct:   546 PNSIDALRGLLGSIPDNAFQKSLGGQEWTLSLRIAS 581

GO:0009507 "chloroplast" evidence=ISM

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2176826 AT5G24690 "AT5G24690" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 36/116 (31%), Positives = 59/116 (50%)

Query:   181 RMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGML 240
             RMLADP+FL+K+  E      C+   E + R      E++L L ++L     + A V +L
Sbjct:   240 RMLADPAFLYKLLLEQAATVGCSVWWEVKNRKNRLKEEWDLALINVLTVSACNAAAVWLL 299

Query:   241 APYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYKVLQV 296
             AP    G    ++  F  +QN    LP+++FE   P   F +++R  + FYK  ++
Sbjct:   300 APCRSYG----NTFRFD-LQNTLQKLPNNLFEMSYPLREFDLQKRFHSLFYKAAEL 350

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2077838 AT3G08640 "AT3G08640" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
 Identities = 42/133 (31%), Positives = 63/133 (47%)

Query:   162 QGSVW-PLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFE 220
             + S W P+G  ++     R R+ ADP F FKV  E ++      L +   R     +E +
Sbjct:    94 ESSPWGPIGLFIQGW---RSRVAADPQFPFKVLMEEIVGLSACVLGDMASRPNFGLNELD 150

Query:   221 LYLADLLVGLVVDIALVGMLAPYAR-IGQPSASSGLFGRIQNACGSLPSSVFEAERPGCR 279
                + L+VG +++  L+ MLAP A  +G      G+F   +N C S  S +FE    G  
Sbjct:   151 FVFSTLVVGSILNFVLMYMLAPTAATLGSSQTLPGIF---RN-CPS--SHMFEQ---GS- 200

Query:   280 FSVKQRIATYFYK 292
             F+V  R  T  YK
Sbjct:   201 FTVMNRFGTLVYK 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      297       263   0.00091  114 3  11 22  0.41    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  195 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.79u 0.11s 19.90t   Elapsed:  00:00:01
  Total cpu time:  19.79u 0.11s 19.90t   Elapsed:  00:00:01
  Start:  Tue May 21 04:02:36 2013   End:  Tue May 21 04:02:37 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
pfam11891	179	pfam11891, DUF3411, Domain of unknown function (DU	1e-48
PRK05325	401	PRK05325, PRK05325, hypothetical protein; Provisio	1e-05
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	1e-05
PHA00370	297	PHA00370, III, attachment protein	4e-04
COG1512	271	COG1512, COG1512, Beta-propeller domains of methan	7e-04
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	0.002
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.003
COG2718	423	COG2718, COG2718, Uncharacterized conserved protei	0.003
PHA00370	297	PHA00370, III, attachment protein	0.004
PLN03184	673	PLN03184, PLN03184, chloroplast Hsp70; Provisional	0.004

>gnl|CDD|221294 pfam11891, DUF3411, Domain of unknown function (DUF3411)

 Score =  159 bits (405), Expect = 1e-48
 Identities = 61/113 (53%), Positives = 79/113 (69%), Gaps = 2/113 (1%)

Query: 180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGM 239
           +R+LADPSFLFK+  E VID C AT+AE +KRG++FW+EF+L  ADLLVG VV+ ALV +
Sbjct: 1   ERLLADPSFLFKLAMEEVIDICAATVAEVEKRGENFWAEFDLVAADLLVGSVVNFALVYL 60

Query: 240 LAPYARIGQPSASSGLFGRIQNACGSLPSSVFEAERPGCRFSVKQRIATYFYK 292
           LAP    G  +A     G ++   GSLPS+VFE   PG  +S++QR  T FYK
Sbjct: 61  LAPTRSFGSTAAEM--AGGLRKFLGSLPSNVFEKGLPGRSYSLQQRFGTVFYK 111

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. Length = 179

>gnl|CDD|235409 PRK05325, PRK05325, hypothetical protein; Provisional

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 12/79 (15%)

Query: 58  KTIEIPGKITEE------SADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGND 111
           + + IP +  +E             +    G+   GD  G   GGGG  G GGGDGEG D
Sbjct: 37  EVVSIPIRDIDEPKFRYGRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGDGEGED 96

Query: 112 GEE-----KEFGPILKFEE 125
             E     +E   +L FE+
Sbjct: 97  YFEFEISLEELLDLL-FED 114

Length = 401

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 2   SACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIE 61
           S   S     +L +  PQ  +         S + +T +  A      +  +  ++  +  
Sbjct: 5   STMVSAAASTSLSSSRPQLSSFSS-----RSPQSATRSPRA----SSIKCSASASASSSA 55

Query: 62  IPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGE 113
                +  +         S      G   GGGG GG   GGGGG G G    
Sbjct: 56  TSSSASLVAN--GAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWR 105

Length = 796

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 80  SGGDGGAGDSPGG-GGGGGGDSGGGGGDGEGNDGEEKEFG 118
           +GGD G G++ GG GGG  G SGGGG DG G++G      
Sbjct: 96  TGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKS 135

Length = 297

>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 16/33 (48%), Positives = 16/33 (48%)

Query: 75  PRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDG 107
                  G  G G S GG  GGGG SGGGG  G
Sbjct: 237 SSGSGGSGGSGGGSSGGGFSGGGGSSGGGGASG 269

Length = 271

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 19/34 (55%), Positives = 20/34 (58%)

Query: 79  SSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
            SGG GG GD  G GGGGGG  GG GG+     G
Sbjct: 113 GSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGG 146

Length = 182

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 17/32 (53%), Positives = 17/32 (53%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
           G  GG G   GGGGGGG   GG GG   G  G
Sbjct: 5   GFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRG 36

Length = 293

>gnl|CDD|225339 COG2718, COG2718, Uncharacterized conserved protein [Function unknown]

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 76  RIHSSGGDGGAGD---SPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIEL 132
            +     +   GD    P GGGGGG   G   GDGEG D    EF   +  EEV+ ++  
Sbjct: 74  HVGPGNDEFAVGDRIERPQGGGGGGSGKGQAAGDGEGED----EFVFQISREEVL-DLLF 128

Query: 133 KGVGLPD 139
           + + LP+
Sbjct: 129 EDLELPN 135

Length = 423

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 37.6 bits (87), Expect = 0.004
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 77  IHSSGGDGGAGDSPGGGGGGGGDSGGG---GGDGEGNDG 112
             S+  DG  G +  GG   GGD+GGG   GG G G+ G
Sbjct: 77  TGSADKDGDGGGTGEGGSDTGGDTGGGNTGGGSGGGDTG 115

Length = 297

>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 77  IHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGE 113
           +++  G GGAG +PGG  G    S  GG   +  D +
Sbjct: 634 LYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDAD 670

Length = 673

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
PF11891	180	DUF3411: Domain of unknown function (DUF3411); Int	100.0
PF04285	421	DUF444: Protein of unknown function (DUF444); Inte	93.49
PLN03138	796	Protein TOC75; Provisional	93.42
TIGR02877	371	spore_yhbH sporulation protein YhbH. This protein	93.03
PRK05325	401	hypothetical protein; Provisional	91.16
COG1512	271	Beta-propeller domains of methanol dehydrogenase t	88.99
COG4907	595	Predicted membrane protein [Function unknown]	88.25
COG1512	271	Beta-propeller domains of methanol dehydrogenase t	82.32

>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=3.4e-47  Score=336.04  Aligned_cols=116  Identities=47%  Similarity=0.812  Sum_probs=110.4

Q ss_pred             HHHhcCcchhHHHhHHhhhhhhhhhhhhHhhccccchhHHHHHHHHHHHHHHHHHHhhhhcccccccCCCCcCCchhhhH
Q 022450          180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFWSEFELYLADLLVGLVVDIALVGMLAPYARIGQPSASSGLFGRI  259 (297)
Q Consensus       180 ~RlLADP~FlfKl~iE~~I~i~~~~~aE~~kRge~F~~ElDfV~adlv~g~v~dfaLVwLLAPt~s~g~~~~sag~~~~l  259 (297)
                      +||||||+|||||++||+||++|+++|||++|||+||+|||||++|+|+++|+||+||||||||+++++++.+.. .+.+
T Consensus         1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~lv~llAPt~s~~~~~~~~~-~~~~   79 (180)
T PF11891_consen    1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFALVWLLAPTRSFGSPAASSP-GGGL   79 (180)
T ss_pred             CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHhccchHhhCccccccc-chHH
Confidence            699999999999999999999999999999999999999999999999999999999999999999998775321 2689


Q ss_pred             HHHhccCCCcccccCCCCCCCchhhhHHHhhhcceee
Q 022450          260 QNACGSLPSSVFEAERPGCRFSVKQRIATYFYKVLQV  296 (297)
Q Consensus       260 q~~l~~lP~n~Fq~~~pG~~fsl~QRiga~~~KG~~f  296 (297)
                      |+++++||+||||+++||++||++||++||+|||++|
T Consensus        80 ~~~~~~~P~n~Fq~~~~g~~fsl~qR~~~~~~kg~~l  116 (180)
T PF11891_consen   80 QKFLGSLPNNAFQKGYPGRSFSLAQRIGAFVYKGAKL  116 (180)
T ss_pred             HHHHHhChHHHhccCCCCCcccHHHHHHHHHHcchHh
Confidence            9999999999999999999999999999999999987

This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.

>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56

Probab=93.49  E-value=0.19  Score=50.64  Aligned_cols=72  Identities=35%  Similarity=0.528  Sum_probs=31.3

Q ss_pred             CCceeccCCCCcccCcCCC----CccccCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHH
Q 022450           56 TPKTIEIPGKITEESADCE----PRIHSSGGDGGAGDS---PGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMK  128 (297)
Q Consensus        56 ~~~t~~i~G~~~~~s~~~~----~~i~~~~g~g~~g~~---~~~~gg~~g~~ggG~~~g~~~d~~~~efg~~l~~~~Vl~  128 (297)
                      +.+++++.+.+++.-.+-.    ..+..+.|++.-|+.   +.+++++|+|+|+|.|+++|+|+=+    --++.||.+.
T Consensus        50 ~~V~IP~r~l~Ep~Fr~g~gg~~~~Vg~Gnge~~~GD~I~rp~~g~g~g~G~g~gag~geGeD~fe----~els~eE~~~  125 (421)
T PF04285_consen   50 EKVSIPIRGLEEPRFRHGQGGQREHVGPGNGEFKEGDVIGRPPGGGGGGDGGGQGAGDGEGEDDFE----FELSREEFLD  125 (421)
T ss_pred             ceEeecCCCCCCCceeCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCeEE----EEEEHHHHHH
Confidence            3566777666666443333    222222222222443   2233222222223344555555433    4455666555


Q ss_pred             HHH
Q 022450          129 EIE  131 (297)
Q Consensus       129 ea~  131 (297)
                      .-.
T Consensus       126 llf  128 (421)
T PF04285_consen  126 LLF  128 (421)
T ss_pred             HhH
Confidence            443

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].

>PLN03138 Protein TOC75; Provisional

Probab=93.42  E-value=0.2  Score=54.15  Aligned_cols=21  Identities=24%  Similarity=0.176  Sum_probs=16.1

Q ss_pred             CcccccccCCCCCCCCCCCCc
Q 022450            2 SACSSTFRLPNLPNISPQNHN   22 (297)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~   22 (297)
                      ++|.+.++-++++.-.||+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~   25 (796)
T PLN03138          5 STMVSAAASTSLSSSRPQLSS   25 (796)
T ss_pred             cccceeccCCCccCCCccccc
Confidence            578888888888887777654

>TIGR02877 spore_yhbH sporulation protein YhbH

Probab=93.03  E-value=0.27  Score=48.96  Aligned_cols=75  Identities=25%  Similarity=0.326  Sum_probs=34.8

Q ss_pred             CCceeccCCCCcccCcCC---CCccccCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCcccccccccCHHHHHHHHH
Q 022450           56 TPKTIEIPGKITEESADC---EPRIHSSGGDGGAGDS-PGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIE  131 (297)
Q Consensus        56 ~~~t~~i~G~~~~~s~~~---~~~i~~~~g~g~~g~~-~~~~gg~~g~~ggG~~~g~~~d~~~~efg~~l~~~~Vl~ea~  131 (297)
                      +.+.+||.+.+++.-.+-   +..++.+.|.---|+. +-..+|+||++|.|.|+|+|+|+=+    --++.||.++.-.
T Consensus        49 ~~V~IPir~l~Ep~F~~g~~~~~~Vg~Gng~~~~GD~i~rp~~~~ggg~g~gag~geGed~fe----~e~s~eE~~~~lf  124 (371)
T TIGR02877        49 KKIKVPIRGLKEYRFRYDWNKQKRVGQGDGNEKVGDVIGRERAGGEGGGGKGAGDQEGEDYYE----TEVTLEELFELLF  124 (371)
T ss_pred             ceEEccCCCCccceEEeCCCCCCeecCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcceEE----EEecHHHHHHHHH
Confidence            367777777777644332   3333322222122444 1111111222223344445555444    4567888877766


Q ss_pred             HcC
Q 022450          132 LKG  134 (297)
Q Consensus       132 rr~  134 (297)
                      .-.
T Consensus       125 EdL  127 (371)
T TIGR02877       125 EDL  127 (371)
T ss_pred             hhc
Confidence            543

This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.

>PRK05325 hypothetical protein; Provisional

Probab=91.16  E-value=0.6  Score=46.94  Aligned_cols=20  Identities=10%  Similarity=-0.165  Sum_probs=13.4

Q ss_pred             CCceeccCCCCcccCcCCCC
Q 022450           56 TPKTIEIPGKITEESADCEP   75 (297)
Q Consensus        56 ~~~t~~i~G~~~~~s~~~~~   75 (297)
                      +.+.++|++.+++.-.+...
T Consensus        37 ~~v~IPi~~i~Ep~F~~g~~   56 (401)
T PRK05325         37 EVVSIPIRDIDEPKFRYGRG   56 (401)
T ss_pred             ceEEecCCCCccceEEeCCC
Confidence            46777888877776555443

>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

Probab=88.99  E-value=0.4  Score=45.79  Aligned_cols=10  Identities=90%  Similarity=1.846  Sum_probs=3.8

Q ss_pred             CCCCCCCCCC
Q 022450           95 GGGGDSGGGG  104 (297)
Q Consensus        95 g~~g~~ggG~  104 (297)
                      ||||+.||||
T Consensus       257 gGGgS~GGGG  266 (271)
T COG1512         257 GGGGSSGGGG  266 (271)
T ss_pred             CCCCCCCCCC
Confidence            3333333333

>COG4907 Predicted membrane protein [Function unknown]

Probab=88.25  E-value=0.39  Score=49.68  Aligned_cols=11  Identities=0%  Similarity=-0.067  Sum_probs=5.8

Q ss_pred             eeeecccccCC
Q 022450           30 FLSLRHSTATN   40 (297)
Q Consensus        30 ~~~~~~~~~~~   40 (297)
                      |.-.||+-.+.
T Consensus       546 ~~i~h~nysr~  556 (595)
T COG4907         546 SPIFHNNYSRS  556 (595)
T ss_pred             eeEEecchhhh
Confidence            34456665544

>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

Probab=82.32  E-value=1.4  Score=42.21  Aligned_cols=15  Identities=53%  Similarity=1.006  Sum_probs=7.6

Q ss_pred             CCCCCCCCCCCCCCC
Q 022450           80 SGGDGGAGDSPGGGG   94 (297)
Q Consensus        80 ~~g~g~~g~~~~~~g   94 (297)
                      ++|.|++|+++|+++
T Consensus       237 ~~g~g~~g~~gg~~~  251 (271)
T COG1512         237 SSGSGGSGGSGGGSS  251 (271)
T ss_pred             cCCCCCCCCCCCCCC
Confidence            345555555555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00