Citrus Sinensis ID: 022453

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------
Protein Sequence
MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Secondary Structure (PSIPRED)
cEEEEccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEcccccEEccccHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHcccEEEEEEccccHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mlalvfppsftwftaryyapALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTIsvsvfglptpigAGIMLVSCVsgaqlsnyatfltdpplaplsIVMTSLSTATAVFVTPLLSLLLIgkrlpvdvkgMVSSILQIVVVPIAaglllnrffpricnairpflpplsVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRffqdplvsvppAISTVIMSLMGFFLVMLWAKKSE
Flexible Loop (DISEMBL)
mlalvfppsfTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Low Complexity Region (SEG)
MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGltillliitFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Disordered region (IsUnstruct)
**ALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWA****
Disordered Region (DISOPRED)
MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKK**
Disordered Region (DISEMBL)
MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Disordered Region (DISPRO)
MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKK**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	297	2.2.26 [Sep-21-2011]
Q8VYY4	409	Probable sodium/metabolit	yes	no	1.0	0.726	0.784	1e-134
Q650U0	401	Probable sodium/metabolit	yes	no	1.0	0.740	0.767	1e-130
B8BDK4	401	Probable sodium/metabolit	N/A	no	1.0	0.740	0.767	1e-130
F4JPW1	407	Probable sodium/metabolit	no	no	1.0	0.729	0.747	1e-129
Q6K739	423	Probable sodium/metabolit	no	no	0.942	0.661	0.444	7e-59
Q8RXE8	431	Probable sodium/metabolit	no	no	0.956	0.658	0.424	4e-55
Q1EBV7	409	Sodium/pyruvate cotranspo	no	no	0.932	0.677	0.363	3e-41
Q5VRB2	419	Probable sodium/metabolit	no	no	0.942	0.668	0.341	4e-38
Q93YR2	401	Probable sodium/metabolit	no	no	0.962	0.713	0.317	1e-36
Q7XVB3	406	Probable sodium/metabolit	no	no	0.946	0.692	0.333	1e-31

>sp|Q8VYY4|BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis thaliana GN=BASS6 PE=2 SV=1

 Score =  478 bits (1230), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/297 (78%), Positives = 267/297 (89%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           +LAL++PPSFTWFT+RY+ PALGFLMFAVG+NS+EKDF+EAFKRP AI  GYVGQ++VKP
Sbjct: 110 ILALIYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKP 169

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
           +LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLSTA
Sbjct: 170 VLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLSTA 229

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFLP 
Sbjct: 230 TAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPI 289

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSVL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D KA
Sbjct: 290 LSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKA 349

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           +QRTLSYETGMQSSLLALALA +FFQDPLV +PPAISTV+MSLMGF LV++W+K+  
Sbjct: 350 MQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIWSKEKS 406

May function as sodium-coupled metabolite transporter across the chloroplast envelope.
Arabidopsis thaliana (taxid: 3702)

>sp|Q650U0|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS5 PE=2 SV=1

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/297 (76%), Positives = 266/297 (89%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           +LALV+PPSFTWFT RYYAPALGFLMFAVGVNSS KDFIEA +RP AI AGYVGQF++KP
Sbjct: 104 ILALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKP 163

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
            LG++FGT++V++F LPT +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTA
Sbjct: 164 FLGFLFGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTA 223

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAVFVTP LS  LIGK+LPVDVKGM+SSI+QIVV PIAAGLLLNR+ PR+C+AI+PFLPP
Sbjct: 224 TAVFVTPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPP 283

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSV VTA CVG+PLAINI++V+SPFGL  +LL+  FH S+F+AGY + G  F E+ DVKA
Sbjct: 284 LSVFVTALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKA 343

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           LQRT+S+ETGMQSSLLALALANRFF DPLV VPPAIS V+MSLMGF LVM+W+K+++
Sbjct: 344 LQRTVSFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGFALVMVWSKRTK 400

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8BDK4|BASS5_ORYSI Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. indica GN=BASS5 PE=3 SV=1

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/297 (76%), Positives = 266/297 (89%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           +LALV+PPSFTWFT RYYAPALGFLMFAVGVNSS KDFIEA +RP AI AGYVGQF++KP
Sbjct: 104 ILALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKP 163

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
            LG++FGT++V++F LPT +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTA
Sbjct: 164 FLGFLFGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTA 223

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAVFVTP LS  LIGK+LPVDVKGM+SSI+QIVV PIAAGLLLNR+ PR+C+AI+PFLPP
Sbjct: 224 TAVFVTPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPP 283

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSV VTA CVG+PLAINI++V+SPFGL  +LL+  FH S+F+AGY + G  F E+ DVKA
Sbjct: 284 LSVFVTALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKA 343

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           LQRT+S+ETGMQSSLLALALANRFF DPLV VPPAIS V+MSLMGF LVM+W+K+++
Sbjct: 344 LQRTVSFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGFALVMVWSKRTK 400

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. indica (taxid: 39946)

>sp|F4JPW1|BASS5_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Arabidopsis thaliana GN=BASS5 PE=2 SV=1

 Score =  460 bits (1184), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/297 (74%), Positives = 261/297 (87%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           +LALV+PPSFTWF  RY+ P LGF+MFAVG+NS+E+DF+EA KRP AIFAGY+GQ+++KP
Sbjct: 111 ILALVYPPSFTWFKPRYFVPGLGFMMFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKP 170

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
           +LGYIFG I+VS+F LPT IGAGIMLVSCVSGAQLSNY TFLTDP LA LSIVMTS+STA
Sbjct: 171 LLGYIFGVIAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTA 230

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAV VTP+LSLLLIGK+LPVDV GM+SSILQ+V+ PIAAGLLLNR FPR+ NAI+PFLP 
Sbjct: 231 TAVLVTPMLSLLLIGKKLPVDVFGMISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPA 290

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           L+V+  +CC+GAPLA+NI+S++SPFG TIL L+ITFHL AFVAGY  TG  F++A DVKA
Sbjct: 291 LTVIDMSCCIGAPLALNIDSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKA 350

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           LQRT+SYETGMQSSLLALALA +FFQDPLV VPPAISTV+MSLMG  LV +W  + E
Sbjct: 351 LQRTISYETGMQSSLLALALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIWKNRKE 407

Plastidic transporter involved in the biosynthesis of aliphatic glucosinolates by translocating the biosynthetic intermediates of Met-derived glucosinolates across chloroplast membranes. Transports short chain (C2) alpha-keto acids, such as 4-methylsulfanyl-2-oxobutanoic acid, from the cytosol to the chloroplast where they are subjected to chain elongation cycles. Functions also in the transport of chain-elongated (C3 to C8) Met derivatives from the chloroplast to the cytosol. Does not seem to be involved in the transport of indole-derived glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K739|BASS3_ORYSJ Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS3 PE=2 SV=1

 Score =  227 bits (579), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 128/288 (44%), Positives = 185/288 (64%), Gaps = 8/288 (2%)

Query: 7   PPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF 66
           P +F+W +  YYAPALG +M ++G+  S  DF  AFKRP  +  GY+ Q++VKP++G + 
Sbjct: 123 PATFSWVSKEYYAPALGGIMLSIGIKLSIDDFALAFKRPVPLTIGYMAQYIVKPLMGVLI 182

Query: 67  GTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVT 126
                  FG+P+   AG +L  CVSGAQLS+YA+FL+   +A LSI++TS ST ++V VT
Sbjct: 183 A----RAFGMPSAFFAGFVLTCCVSGAQLSSYASFLSKGDVA-LSILLTSCSTISSVVVT 237

Query: 127 PLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT 186
           P+L+ LLIG  +PVD   M  SILQ+V+VP+  GLLLN +   + N I+P +P +++L T
Sbjct: 238 PVLTGLLIGSVVPVDGIAMAKSILQVVLVPVTLGLLLNTYAKAVVNVIQPVMPFVAMLCT 297

Query: 187 ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLS 246
           + C+G+PLAIN   ++S  G  +LL I+TFH++AF+ GY ++ L      +   + RT+S
Sbjct: 298 SLCIGSPLAINRSKILSSEGFLLLLPIVTFHIAAFIVGYWISKLPMLRQEE--PVCRTIS 355

Query: 247 YETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAK 294
             TGMQSS LA  LA +F      +VP A S VIM++ G  L   W  
Sbjct: 356 VCTGMQSSTLAGLLATQFLGSSQ-AVPAACSVVIMAIFGLTLASYWGN 402

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RXE8|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1

 Score =  215 bits (547), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 124/292 (42%), Positives = 183/292 (62%), Gaps = 8/292 (2%)

Query: 3   ALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL 62
           AL +PPSFTW +   YAPALG +M ++G+  S  DF  AFKRP  +  G+V Q+V+KP+L
Sbjct: 126 ALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPLSVGFVAQYVLKPLL 185

Query: 63  GYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATA 122
           G +      + FG+P    AG +L  CV+GAQLS+YA+ L+   +A +SI++TS +T  +
Sbjct: 186 GVLVA----NAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVA-MSILLTSSTTIAS 240

Query: 123 VFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS 182
           V  TPLLS LLIG  +PVD   M  SILQ+V+VPI  GL+LN +   +   ++P +P ++
Sbjct: 241 VIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKPVVTLLQPVMPFVA 300

Query: 183 VLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQ 242
           ++ T+ C+G+PL+IN   ++S  GL +++ I+TFH  AF  GY  + +      +   + 
Sbjct: 301 MVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFSKIPGLRQEE--EVS 358

Query: 243 RTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAK 294
           RT+S  TGMQSS LA  LA++F      +VP A S V+M++MG  L   W  
Sbjct: 359 RTISLCTGMQSSTLAGLLASQFLGSSQ-AVPAACSVVVMAIMGLCLASFWGN 409

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1EBV7|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana GN=BASS2 PE=2 SV=1

 Score =  169 bits (427), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/289 (36%), Positives = 164/289 (56%), Gaps = 12/289 (4%)

Query: 5   VFPPSF-TWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILG 63
           +F PS  TW     +   LGFLM ++G+  + +DF    + P  +  G++ Q+++KPILG
Sbjct: 117 IFKPSLVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYMIKPILG 176

Query: 64  YIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAV 123
           ++          L  P+  G++LVSC  G Q SN AT+++   +A LS++MT+ ST  A+
Sbjct: 177 FLIAM----TLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA-LSVLMTTCSTIGAI 231

Query: 124 FVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSV 183
            +TPLL+ LL G+ +PVD  G+  S  Q+V+VP   G+L N FFP+  + I    P + V
Sbjct: 232 IMTPLLTKLLAGQLVPVDAAGLALSTFQVVLVPTIIGVLANEFFPKFTSKIITVTPLIGV 291

Query: 184 LVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQR 243
           ++T     +P+   +  V+   G  ++L +   H +AF  GY ++  +F E+       R
Sbjct: 292 ILTTLLCASPIG-QVADVLKTQGAQLILPVALLHAAAFAIGYWISKFSFGESTS-----R 345

Query: 244 TLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLW 292
           T+S E GMQSS L   LA + F +PLV+VP A+S V M+L G  L + W
Sbjct: 346 TISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSGLAVFW 394

Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope. Is required for sodium-coupled pyruvate import into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VRB2|BASS2_ORYSJ Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS2 PE=2 SV=1

 Score =  158 bits (400), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 165/293 (56%), Gaps = 13/293 (4%)

Query: 5   VFPPSF-TWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILG 63
           ++ PS  TW     +   LGFLM ++G+  + +DF    + P  +  G++ Q+++KP+LG
Sbjct: 126 IYKPSMVTWLETDLFTVGLGFLMLSMGLTLTFEDFRRCMRNPWTVGVGFLAQYLIKPMLG 185

Query: 64  YIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAV 123
           +           L  P+  G++LVSC  G Q SN AT+++   +A LS++MT+ ST  A+
Sbjct: 186 FAIAM----TLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA-LSVLMTTCSTIGAI 240

Query: 124 FVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSV 183
            +TPLL+ LL G+ +PVD  G+  S  Q+V++P   G+L + +FP+    I    P + V
Sbjct: 241 VMTPLLTKLLAGQLVPVDAAGLAISTFQVVLLPTIVGVLAHEYFPKFTERIISITPLIGV 300

Query: 184 LVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGL-AFAEAHDVKALQ 242
           L+T     +P+   +  V+   G  +++ +   H++AF  GY ++ + +F E+       
Sbjct: 301 LLTTLLCASPIG-QVSEVLKAQGGQLIIPVALLHVAAFALGYWLSKVSSFGESTS----- 354

Query: 243 RTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKK 295
           RT+S E GMQSS L   LA + F +PLV+VP A+S V M+L G  L + W  +
Sbjct: 355 RTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNR 407

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93YR2|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1

 Score =  153 bits (387), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 161/296 (54%), Gaps = 10/296 (3%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           +L L+ P +F W T  +    L   M  +G+  +  D   A   P  +FAG++ Q+ V P
Sbjct: 110 LLGLMRPSTFNWVTPNWTIVGLTITMLGMGMTLTLDDLRGALSMPKELFAGFLLQYSVMP 169

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
           +  +    +      LP    AG++LV C  G   SN  T++    +A LS++MT+ ST 
Sbjct: 170 LSAFFVSKL----LNLPPHYAAGLILVGCCPGGTASNIVTYIARGNVA-LSVLMTAASTV 224

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           +AV +TPLL+  L  + + VD  G++ S LQ+V++P+ AG  LN++F ++   + P +PP
Sbjct: 225 SAVIMTPLLTAKLAKQYITVDALGLLMSTLQVVLLPVLAGAFLNQYFKKLVKFVSPVMPP 284

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           ++V   A   G  +  N  +++   G  ++L     H+S F+ GY+ + +   +     A
Sbjct: 285 IAVGTVAILCGYAIGQNASAILMS-GKQVVLASCLLHISGFLFGYLFSRILGIDV----A 339

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS 296
             RT+S E GMQ+S+L + LA + F +PL +VP A+S+V  S++G  L  +W + +
Sbjct: 340 SSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSILGSVLAGIWRRSA 395

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XVB3|BASS1_ORYSJ Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS1 PE=2 SV=2

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 159/291 (54%), Gaps = 10/291 (3%)

Query: 2   LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPI 61
           +AL  PP+F W +       + F M  +G+  +  D   A   P  + +G++ Q+ V P+
Sbjct: 116 VALWRPPAFLWVSPMAQIVGISFTMLGMGMTLTLDDLKTALLMPKELASGFLLQYSVMPL 175

Query: 62  LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT 121
            G++   +      LP+   AG++LVSC  G   SN  T+L    +A LS++MT+ ST  
Sbjct: 176 SGFLISKL----LNLPSYYAAGLILVSCCPGGTASNIVTYLARGNVA-LSVLMTAASTFA 230

Query: 122 AVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 181
           A F+TPLL+  L G+ + VD  G+  S  Q+V+ P+  G LLN++   +   + P +P +
Sbjct: 231 AAFLTPLLTSKLAGQYVAVDPMGLFVSTSQVVLAPVLLGALLNQYCNGLVQLVSPLMPFI 290

Query: 182 SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL 241
           +V   A   G  +A N  +++S  GL +++ +   H S F  GYV   L+     D+ + 
Sbjct: 291 AVATVAVLCGNAIAQNASAILSS-GLQVVMSVCWLHASGFFFGYV---LSRTIGIDISS- 345

Query: 242 QRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLW 292
            RT+S E GMQ+S+L + LA++ F +PL +VP A+S+V  S+ G  L  +W
Sbjct: 346 SRTISIEVGMQNSVLGVVLASKHFGNPLTAVPCAVSSVCHSVYGSLLAGIW 396

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
255537151	413	sodium-bile acid cotransporter, putative	1.0	0.719	0.878	1e-145
449460499	420	PREDICTED: probable sodium/metabolite co	1.0	0.707	0.858	1e-144
224074737	317	bile acid:Na+ symporter family protein [	0.996	0.933	0.871	1e-143
449494361	420	PREDICTED: probable sodium/metabolite co	1.0	0.707	0.855	1e-143
147773542	352	hypothetical protein VITISV_011475 [Viti	0.993	0.838	0.836	1e-139
359497736	356	PREDICTED: uncharacterized sodium-depend	0.932	0.778	0.859	1e-134
297799724	406	bile acid:sodium symporter family protei	1.0	0.731	0.791	1e-134
18416020	409	putative sodium-bile acid cotransporter	1.0	0.726	0.784	1e-132
2827561	460	predicted protein [Arabidopsis thaliana]	1.0	0.645	0.771	1e-129
115480215	401	Os09g0520600 [Oryza sativa Japonica Grou	1.0	0.740	0.767	1e-129

>gi|255537151|ref|XP_002509642.1| sodium-bile acid cotransporter, putative [Ricinus communis] gi|223549541|gb|EEF51029.1| sodium-bile acid cotransporter, putative [Ricinus communis]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 261/297 (87%), Positives = 281/297 (94%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           +LALV+PPSFTWFT RYYAPALGFLMFAVGVNSSEKDF+EAFKRP+AIFAGY+GQF+VKP
Sbjct: 116 LLALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFVEAFKRPSAIFAGYLGQFIVKP 175

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
           ILGYIFG ISVSVF LPTPIGAGIMLVSCVSGAQLSNYATFLTDPP+APLSIVMTSLSTA
Sbjct: 176 ILGYIFGIISVSVFNLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPMAPLSIVMTSLSTA 235

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAVFVTPLLSLLLIGKRLPVDV GMVSSILQIVV PIAAGLLLNRF P I NAIRPFLPP
Sbjct: 236 TAVFVTPLLSLLLIGKRLPVDVTGMVSSILQIVVAPIAAGLLLNRFLPWISNAIRPFLPP 295

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSVLVTACCVGAPLAIN++SV+SPFG TIL LII+FHL AFVAGYV+TGL F +A D+KA
Sbjct: 296 LSVLVTACCVGAPLAINVKSVISPFGATILSLIISFHLLAFVAGYVLTGLVFPKAPDLKA 355

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           LQRT+S+ETGMQSSLLALALANRFF+DPLV+VPPAISTV+MSLMGF LVM+WAKK E
Sbjct: 356 LQRTMSFETGMQSSLLALALANRFFRDPLVAVPPAISTVMMSLMGFTLVMVWAKKKE 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460499|ref|XP_004147983.1| PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic-like [Cucumis sativus]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/297 (85%), Positives = 280/297 (94%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           ++AL+FPPSF WFT+RYYAPALGFLMFAVGVNSSEKDF+EAFK+PAAIFAGYVGQF VKP
Sbjct: 117 LVALIFPPSFAWFTSRYYAPALGFLMFAVGVNSSEKDFLEAFKQPAAIFAGYVGQFFVKP 176

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
           +LGY+FGTI+V++FGLPT IGAGIMLVSCVSGAQLS+YATFLTDP LAPLS+VMTSLSTA
Sbjct: 177 LLGYLFGTIAVTLFGLPTAIGAGIMLVSCVSGAQLSSYATFLTDPSLAPLSVVMTSLSTA 236

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAV VTP LSLLLIGKRLPVDVKGM+SSI QIVV PIAAGLLLNRFFPRIC AIRPFLPP
Sbjct: 237 TAVVVTPFLSLLLIGKRLPVDVKGMISSITQIVVAPIAAGLLLNRFFPRICEAIRPFLPP 296

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSVLVTACCVGAPLAINI +V+SPFGL+ILLLI+ FHLSAF+AGY +TGLAF  + DVKA
Sbjct: 297 LSVLVTACCVGAPLAININAVISPFGLSILLLIVAFHLSAFIAGYSLTGLAFHGSPDVKA 356

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV+MSLMGF LVM+W+K+ E
Sbjct: 357 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVMMSLMGFSLVMIWSKRKE 413

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074737|ref|XP_002304447.1| bile acid:Na+ symporter family protein [Populus trichocarpa] gi|222841879|gb|EEE79426.1| bile acid:Na+ symporter family protein [Populus trichocarpa]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/296 (87%), Positives = 274/296 (92%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           +LALV PPSFTWFT RYYAPALGFLMFAVGVNSSEKDF+EAF RPAAI AGYVGQFVVKP
Sbjct: 22  LLALVHPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFLEAFNRPAAILAGYVGQFVVKP 81

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
            LGY+FG ISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPP+APLSIVMTS+STA
Sbjct: 82  SLGYLFGIISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPMAPLSIVMTSMSTA 141

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAVFVTPLLSLLLIGKRLPVDVKGMVSSI+QIVV PIAAGLLLNR FP+I   IRPFLPP
Sbjct: 142 TAVFVTPLLSLLLIGKRLPVDVKGMVSSIMQIVVAPIAAGLLLNRLFPQISGVIRPFLPP 201

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSVLVTACCVGAPLAIN++SVMSPFG+TI+ LII FHLSAFV GY  TG  F +A D+KA
Sbjct: 202 LSVLVTACCVGAPLAINVDSVMSPFGVTIVSLIIAFHLSAFVVGYYFTGFVFHKASDLKA 261

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS 296
           LQRTLSYETGMQSSLLALALANRFF+DPLV+VPPAISTVIMSLMGF LVM+WAKK 
Sbjct: 262 LQRTLSYETGMQSSLLALALANRFFKDPLVAVPPAISTVIMSLMGFSLVMIWAKKK 317

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494361|ref|XP_004159525.1| PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic-like [Cucumis sativus]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/297 (85%), Positives = 279/297 (93%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           ++AL+FPPSF WFT+RYYAPALGFLMFAVGVNSSEKDF+EAFK+PAAIFAGYVGQF VKP
Sbjct: 117 LVALIFPPSFAWFTSRYYAPALGFLMFAVGVNSSEKDFLEAFKQPAAIFAGYVGQFFVKP 176

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
           +LGY+FGTI+V++FGLPT IGAGIMLVSCVSGAQLS+YATFLTDP LAPLS+VMTSLSTA
Sbjct: 177 LLGYLFGTIAVTLFGLPTAIGAGIMLVSCVSGAQLSSYATFLTDPSLAPLSVVMTSLSTA 236

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAV VTP LSLLLIGKRLPVDVKGM+SSI QIVV PIAAGLLLNRFFPRIC AIRPFLPP
Sbjct: 237 TAVVVTPFLSLLLIGKRLPVDVKGMISSITQIVVAPIAAGLLLNRFFPRICEAIRPFLPP 296

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSVLVTACCVGAPLAINI +V+SPFGL+ILLLI+ FHLSAF+AGY +TGLAF  + DVK 
Sbjct: 297 LSVLVTACCVGAPLAININAVISPFGLSILLLIVAFHLSAFIAGYSLTGLAFHGSPDVKG 356

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV+MSLMGF LVM+W+K+ E
Sbjct: 357 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVMMSLMGFSLVMIWSKRKE 413

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773542|emb|CAN76453.1| hypothetical protein VITISV_011475 [Vitis vinifera]

 Score =  499 bits (1284), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 251/300 (83%), Positives = 276/300 (92%), Gaps = 5/300 (1%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           ++AL++PPSFTWFT RYYAPALGFLMFAVGVNSSEKDF+EAF RP AIFAGYVGQFVVKP
Sbjct: 29  LVALIYPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFLEAFNRPMAIFAGYVGQFVVKP 88

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
           +LGY+FGTI+V++FGLPT IGAGIML SCVSGAQLSNYATFLTDPP+APLSIVMTSLSTA
Sbjct: 89  LLGYLFGTIAVTIFGLPTAIGAGIMLTSCVSGAQLSNYATFLTDPPMAPLSIVMTSLSTA 148

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF-PRICNAIRPFLP 179
           TAVFVTP+LSLLLIGKRLPVDVKGMVSSILQIVV PIAAGLLLNR+F PRICNAIRPFLP
Sbjct: 149 TAVFVTPILSLLLIGKRLPVDVKGMVSSILQIVVAPIAAGLLLNRWFLPRICNAIRPFLP 208

Query: 180 PLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVK 239
           PLSVLVTACCVG+PLAIN+ESV+SPFG+T+ +LII FH +AFVAGY ++GL F EA DVK
Sbjct: 209 PLSVLVTACCVGSPLAINVESVLSPFGVTVSMLIIAFHFTAFVAGYGLSGLVFHEAPDVK 268

Query: 240 ALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVM----LWAKK 295
           A+QRTLS+ETGMQSSLLALALANRFFQD LV VPPAIS VIMSLMGF LVM    +W  K
Sbjct: 269 AIQRTLSFETGMQSSLLALALANRFFQDSLVGVPPAISVVIMSLMGFALVMVGSIIWPMK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497736|ref|XP_002274965.2| PREDICTED: uncharacterized sodium-dependent transporter yocS-like, partial [Vitis vinifera]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/277 (85%), Positives = 260/277 (93%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           ++AL++PPSFTWFT RYYAPALGFLMFAVGVNSSEKDF+EAF RP AIFAGYVGQFVVKP
Sbjct: 80  LVALIYPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFLEAFNRPMAIFAGYVGQFVVKP 139

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
           +LGY+FGTI+V++FGLPT IGAGIML SCVSGAQLSNYATFLTDPP+APLSIVMTSLSTA
Sbjct: 140 LLGYLFGTIAVTIFGLPTAIGAGIMLTSCVSGAQLSNYATFLTDPPMAPLSIVMTSLSTA 199

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAVFVTP+LSLLLIGKRLPVDVKGMVSSI QIVV PIAAGLLLNRF PRICNAIRPFLPP
Sbjct: 200 TAVFVTPILSLLLIGKRLPVDVKGMVSSISQIVVAPIAAGLLLNRFLPRICNAIRPFLPP 259

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSVLVTACCVG+PLAIN+ESV+SPFG+T+ +LII FH +AFVAGY ++GL F EA DVKA
Sbjct: 260 LSVLVTACCVGSPLAINVESVLSPFGVTVSMLIIAFHFTAFVAGYGLSGLVFHEAPDVKA 319

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAIS 277
           LQRTLS+ETGMQSSLLALALANRFFQD LV VPPAIS
Sbjct: 320 LQRTLSFETGMQSSLLALALANRFFQDSLVGVPPAIS 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799724|ref|XP_002867746.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297313582|gb|EFH44005.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/297 (79%), Positives = 267/297 (89%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           +LAL++PPSFTWFT+RY+ PALGFLMFAVG+NS+EKDF+EAFKRP AI  GYVGQ++VKP
Sbjct: 107 ILALLYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKP 166

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
           ILG+IFG  +VSVF LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLSTA
Sbjct: 167 ILGFIFGLAAVSVFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLSTA 226

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFLP 
Sbjct: 227 TAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPI 286

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSVL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D KA
Sbjct: 287 LSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKA 346

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           +QRTLSYETGMQSSLLALALA +FFQDPLV +PPA+STV+MSLMGF LVM+W+ + E
Sbjct: 347 MQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAVSTVVMSLMGFTLVMIWSNEKE 403

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416020|ref|NP_567671.1| putative sodium-bile acid cotransporter [Arabidopsis thaliana] gi|75161555|sp|Q8VYY4.1|BASS6_ARATH RecName: Full=Probable sodium/metabolite cotransporter BASS6, chloroplastic; AltName: Full=Bile acid transporter 4; AltName: Full=Bile acid-sodium symporter family protein 6; Flags: Precursor gi|17529350|gb|AAL38902.1| unknown protein [Arabidopsis thaliana] gi|21436155|gb|AAM51324.1| unknown protein [Arabidopsis thaliana] gi|21618116|gb|AAM67166.1| unknown [Arabidopsis thaliana] gi|332659265|gb|AEE84665.1| putative sodium-bile acid cotransporter [Arabidopsis thaliana]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/297 (78%), Positives = 267/297 (89%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           +LAL++PPSFTWFT+RY+ PALGFLMFAVG+NS+EKDF+EAFKRP AI  GYVGQ++VKP
Sbjct: 110 ILALIYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKP 169

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
           +LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLSTA
Sbjct: 170 VLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLSTA 229

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFLP 
Sbjct: 230 TAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPI 289

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSVL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D KA
Sbjct: 290 LSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKA 349

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           +QRTLSYETGMQSSLLALALA +FFQDPLV +PPAISTV+MSLMGF LV++W+K+  
Sbjct: 350 MQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIWSKEKS 406

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2827561|emb|CAA16569.1| predicted protein [Arabidopsis thaliana] gi|3292809|emb|CAA19799.1| putative protein [Arabidopsis thaliana] gi|7269131|emb|CAB79239.1| predicted protein [Arabidopsis thaliana]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/297 (77%), Positives = 264/297 (88%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           +LAL++PPSFTWFT+R++    GFLMFAVG+NS+EKDF+EAFKRP AI  GYVGQ++VKP
Sbjct: 161 ILALIYPPSFTWFTSRFFPLEQGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKP 220

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
           +LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLSTA
Sbjct: 221 VLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLSTA 280

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFLP 
Sbjct: 281 TAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPI 340

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSVL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D KA
Sbjct: 341 LSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKA 400

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           +QRTLSYETGMQSSLLALALA +FFQDPLV +PPAISTV+MSLMGF LV++W+K+  
Sbjct: 401 MQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIWSKEKS 457

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115480215|ref|NP_001063701.1| Os09g0520600 [Oryza sativa Japonica Group] gi|75114195|sp|Q650U0.1|BASS5_ORYSJ RecName: Full=Probable sodium/metabolite cotransporter BASS5, chloroplastic; AltName: Full=Bile acid-sodium symporter family protein 5; Flags: Precursor gi|403399724|sp|B8BDK4.1|BASS5_ORYSI RecName: Full=Probable sodium/metabolite cotransporter BASS5, chloroplastic; AltName: Full=Bile acid-sodium symporter family protein 5; Flags: Precursor gi|52076164|dbj|BAD46677.1| unknown protein [Oryza sativa Japonica Group] gi|113631934|dbj|BAF25615.1| Os09g0520600 [Oryza sativa Japonica Group] gi|215678840|dbj|BAG95277.1| unnamed protein product [Oryza sativa Japonica Group] gi|218202470|gb|EEC84897.1| hypothetical protein OsI_32074 [Oryza sativa Indica Group] gi|222641934|gb|EEE70066.1| hypothetical protein OsJ_30046 [Oryza sativa Japonica Group]

 Score =  466 bits (1198), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/297 (76%), Positives = 266/297 (89%)

Query: 1   MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
           +LALV+PPSFTWFT RYYAPALGFLMFAVGVNSS KDFIEA +RP AI AGYVGQF++KP
Sbjct: 104 ILALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKP 163

Query: 61  ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
            LG++FGT++V++F LPT +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTA
Sbjct: 164 FLGFLFGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTA 223

Query: 121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
           TAVFVTP LS  LIGK+LPVDVKGM+SSI+QIVV PIAAGLLLNR+ PR+C+AI+PFLPP
Sbjct: 224 TAVFVTPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPP 283

Query: 181 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 240
           LSV VTA CVG+PLAINI++V+SPFGL  +LL+  FH S+F+AGY + G  F E+ DVKA
Sbjct: 284 LSVFVTALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKA 343

Query: 241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           LQRT+S+ETGMQSSLLALALANRFF DPLV VPPAIS V+MSLMGF LVM+W+K+++
Sbjct: 344 LQRTVSFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGFALVMVWSKRTK 400

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	297
TAIR|locus:2132664	409	AT4G22840 "AT4G22840" [Arabido	0.993	0.721	0.772	1.7e-121
TAIR|locus:2118021	407	BAT5 "AT4G12030" [Arabidopsis	1.0	0.729	0.727	9.1e-116
TAIR|locus:2094483	431	AT3G25410 "AT3G25410" [Arabido	0.949	0.654	0.417	7e-54
TAIR|locus:2039533	409	BASS2 "AT2G26900" [Arabidopsis	0.932	0.677	0.363	3.8e-46
TAIR|locus:2202935	401	AT1G78560 "AT1G78560" [Arabido	0.962	0.713	0.324	1.1e-39
TIGR_CMR|BA_3574	322	BA_3574 "bile acid transporter	0.956	0.881	0.320	6.5e-35
UNIPROTKB|Q8E8Y1	308	SO_4519 "Sodium-dependent tran	0.915	0.883	0.310	6.2e-30
TIGR_CMR|SO_4519	308	SO_4519 "sodium-dependent tran	0.915	0.883	0.310	6.2e-30
TIGR_CMR|SPO_0797	300	SPO_0797 "bile acid transporte	0.878	0.87	0.256	1e-12
UNIPROTKB|F6PLG8	305	SLC10A2 "Uncharacterized prote	0.861	0.839	0.268	2.7e-12

TAIR|locus:2132664 AT4G22840 "AT4G22840" [Arabidopsis thaliana (taxid:3702)]

 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 228/295 (77%), Positives = 261/295 (88%)

Query:     1 MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
             +LAL++PPSFTWFT+RY+ PALGFLMFAVG+NS+EKDF+EAFKRP AI  GYVGQ++VKP
Sbjct:   110 ILALIYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKP 169

Query:    61 ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
             +LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLSTA
Sbjct:   170 VLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLSTA 229

Query:   121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
             TAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFLP 
Sbjct:   230 TAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPI 289

Query:   181 LSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKA 240
             LSVL TACCVGAPLA+NI SVMSPFG         FHLSAF+AGY +TG  F  A D KA
Sbjct:   290 LSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKA 349

Query:   241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKK 295
             +QRTLSYETGMQSSLLALALA +FFQDPLV +PPAISTV+MSLMGF LV++W+K+
Sbjct:   350 MQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIWSKE 404

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2118021 BAT5 "AT4G12030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
 Identities = 216/297 (72%), Positives = 254/297 (85%)

Query:     1 MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
             +LALV+PPSFTWF  RY+ P LGF+MFAVG+NS+E+DF+EA KRP AIFAGY+GQ+++KP
Sbjct:   111 ILALVYPPSFTWFKPRYFVPGLGFMMFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKP 170

Query:    61 ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
             +LGYIFG I+VS+F LPT IGAGIMLVSCVSGAQLSNY TFLTDP LA LSIVMTS+STA
Sbjct:   171 LLGYIFGVIAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTA 230

Query:   121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
             TAV VTP+LSLLLIGK+LPVDV GM+SSILQ+V+ PIAAGLLLNR FPR+ NAI+PFLP 
Sbjct:   231 TAVLVTPMLSLLLIGKKLPVDVFGMISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPA 290

Query:   181 LSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKA 240
             L+V+  +CC+GAPLA+NI+S++SPFG         FHL AFVAGY  TG  F++A DVKA
Sbjct:   291 LTVIDMSCCIGAPLALNIDSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKA 350

Query:   241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
             LQRT+SYETGMQSSLLALALA +FFQDPLV VPPAISTV+MSLMG  LV +W  + E
Sbjct:   351 LQRTISYETGMQSSLLALALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIWKNRKE 407

GO:0005215 "transporter activity" evidence=ISS;IMP

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

TAIR|locus:2094483 AT3G25410 "AT3G25410" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 121/290 (41%), Positives = 176/290 (60%)

Query:     3 ALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL 62
             AL +PPSFTW +   YAPALG +M ++G+  S  DF  AFKRP  +  G+V Q+V+KP+L
Sbjct:   126 ALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPLSVGFVAQYVLKPLL 185

Query:    63 GYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATA 122
             G +      + FG+P    AG +L  CV+GAQLS+YA+ L+   +A +SI++TS +T  +
Sbjct:   186 GVLVA----NAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVA-MSILLTSSTTIAS 240

Query:   123 VFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS 182
             V  TPLLS LLIG  +PVD   M  SILQ+V+VPI  GL+LN +   +   ++P +P ++
Sbjct:   241 VIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKPVVTLLQPVMPFVA 300

Query:   183 VLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQ 242
             ++ T+ C+G+PL+IN   ++S  G         FH  AF  GY  + +      +   + 
Sbjct:   301 MVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFSKIPGLRQEE--EVS 358

Query:   243 RTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLW 292
             RT+S  TGMQSS LA  LA++F      +VP A S V+M++MG  L   W
Sbjct:   359 RTISLCTGMQSSTLAGLLASQFLGSSQ-AVPAACSVVVMAIMGLCLASFW 407

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 105/289 (36%), Positives = 165/289 (57%)

Query:     5 VFPPSF-TWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILG 63
             +F PS  TW     +   LGFLM ++G+  + +DF    + P  +  G++ Q+++KPILG
Sbjct:   117 IFKPSLVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYMIKPILG 176

Query:    64 YIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAV 123
             ++   I++++  L  P+  G++LVSC  G Q SN AT+++   +A LS++MT+ ST  A+
Sbjct:   177 FL---IAMTL-KLSAPLATGLILVSCCPGGQASNVATYISKGNVA-LSVLMTTCSTIGAI 231

Query:   124 FVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSV 183
              +TPLL+ LL G+ +PVD  G+  S  Q+V+VP   G+L N FFP+  + I    P + V
Sbjct:   232 IMTPLLTKLLAGQLVPVDAAGLALSTFQVVLVPTIIGVLANEFFPKFTSKIITVTPLIGV 291

Query:   184 LVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQR 243
             ++T     +P+   +  V+   G          H +AF  GY ++  +F E+       R
Sbjct:   292 ILTTLLCASPIG-QVADVLKTQGAQLILPVALLHAAAFAIGYWISKFSFGES-----TSR 345

Query:   244 TLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLW 292
             T+S E GMQSS L   LA + F +PLV+VP A+S V M+L G  L + W
Sbjct:   346 TISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSGLAVFW 394

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006849 "plasma membrane pyruvate transport" evidence=IDA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2202935 AT1G78560 "AT1G78560" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 96/296 (32%), Positives = 161/296 (54%)

Query:     1 MLALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKP 60
             +L L+ P +F W T  +    L   M  +G+  +  D   A   P  +FAG++ Q+ V P
Sbjct:   110 LLGLMRPSTFNWVTPNWTIVGLTITMLGMGMTLTLDDLRGALSMPKELFAGFLLQYSVMP 169

Query:    61 ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 120
             +  +    +S  +  LP    AG++LV C  G   SN  T++    +A LS++MT+ ST 
Sbjct:   170 LSAFF---VS-KLLNLPPHYAAGLILVGCCPGGTASNIVTYIARGNVA-LSVLMTAASTV 224

Query:   121 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 180
             +AV +TPLL+  L  + + VD  G++ S LQ+V++P+ AG  LN++F ++   + P +PP
Sbjct:   225 SAVIMTPLLTAKLAKQYITVDALGLLMSTLQVVLLPVLAGAFLNQYFKKLVKFVSPVMPP 284

Query:   181 LSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKA 240
             ++V   A   G  +  N  +++   G          H+S F+ GY+ + +      DV A
Sbjct:   285 IAVGTVAILCGYAIGQNASAILMS-GKQVVLASCLLHISGFLFGYLFSRIL---GIDV-A 339

Query:   241 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS 296
               RT+S E GMQ+S+L + LA + F +PL +VP A+S+V  S++G  L  +W + +
Sbjct:   340 SSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAVSSVCHSILGSVLAGIWRRSA 395

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 95/296 (32%), Positives = 149/296 (50%)

Query:     2 LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPI 61
             +A   P  F    + Y    LG +MF +G+     DF     +P  +  G   QF++ P+
Sbjct:    25 IAYFIPAPFLGLNS-YITILLGVVMFGMGLTLKAVDFKIIATKPLPVIIGVCAQFIIMPL 83

Query:    62 LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT 121
             + Y+       V  LP  + AG++L+  V G   SN   +L    LA LSI MTSLST  
Sbjct:    84 VAYVLAY----VMNLPAELAAGLVLLGSVPGGTASNVMVYLAKGNLA-LSIAMTSLSTLL 138

Query:   122 AVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 181
             A   TPL+ LLL G+ +PV+   M  SI+Q++++PI  GL++ +FFP+        +P +
Sbjct:   139 APIATPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGLVVKKFFPKTVTKGMTVIPFI 198

Query:   182 SVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKAL 241
             SVL     V A ++ N+ S+ S  G          +   F+ GY+    AF    D +  
Sbjct:   199 SVLAIIIIVSAVVSANVSSITSS-GLLILIAVMLHNAFGFLLGYIT---AFILKLD-EGT 253

Query:   242 QRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
             +R +S E GMQ+S L +ALA   F  P  ++P  ++ V  ++ G  L  +W+K ++
Sbjct:   254 RRAISIEVGMQNSGLGVALATAHF-GPAAALPSVLAAVWHNIAGPILATIWSKNAK 308

GO:0006810 "transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

UNIPROTKB|Q8E8Y1 SO_4519 "Sodium-dependent transporter BASS family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 89/287 (31%), Positives = 148/287 (51%)

Query:    12 WFTA--RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI 69
             WF        P L  +M ++G+    +DF  AFK+  A+  G + QF + P+       I
Sbjct:    25 WFVVFKNSIVPLLVVIMLSMGLTLDLQDFANAFKQKRAVITGLILQFTLMPLSAL---AI 81

Query:    70 SVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLL 129
             S+ + GL   +  G++LV  V+G   SN   +L    +A LSI MT+LST   V +TPL+
Sbjct:    82 SL-LLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVA-LSITMTALSTLAGVVLTPLI 139

Query:   130 SLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF-PRICNAIRPFLPPLSVLVTAC 188
               LLIG+ + + +  M+ S+++IV++P+  G++LN FF P++   + P LP +S++    
Sbjct:   140 IQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQVAK-LSPALPLISIVAIVM 198

Query:   189 CVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYE 248
              +   +A+N     +  G          +      GY+   L    +H V    +T+S E
Sbjct:   199 AISIIVALNAGQ-FAQVGPVILLAVFLHNGLGLTLGYLCCRL-LGFSHTVC---KTISIE 253

Query:   249 TGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKK 295
              G+Q+S LA AL  +FF  P+ ++P AI ++  +L G  L   WA +
Sbjct:   254 VGLQNSGLATALCIKFFS-PISAIPSAIFSIWHNLSGAMLAGYWASR 299

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|SO_4519 SO_4519 "sodium-dependent transporter" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 89/287 (31%), Positives = 148/287 (51%)

Query:    12 WFTA--RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI 69
             WF        P L  +M ++G+    +DF  AFK+  A+  G + QF + P+       I
Sbjct:    25 WFVVFKNSIVPLLVVIMLSMGLTLDLQDFANAFKQKRAVITGLILQFTLMPLSAL---AI 81

Query:    70 SVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLL 129
             S+ + GL   +  G++LV  V+G   SN   +L    +A LSI MT+LST   V +TPL+
Sbjct:    82 SL-LLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVA-LSITMTALSTLAGVVLTPLI 139

Query:   130 SLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF-PRICNAIRPFLPPLSVLVTAC 188
               LLIG+ + + +  M+ S+++IV++P+  G++LN FF P++   + P LP +S++    
Sbjct:   140 IQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFKPQVAK-LSPALPLISIVAIVM 198

Query:   189 CVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYE 248
              +   +A+N     +  G          +      GY+   L    +H V    +T+S E
Sbjct:   199 AISIIVALNAGQ-FAQVGPVILLAVFLHNGLGLTLGYLCCRL-LGFSHTVC---KTISIE 253

Query:   249 TGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKK 295
              G+Q+S LA AL  +FF  P+ ++P AI ++  +L G  L   WA +
Sbjct:   254 VGLQNSGLATALCIKFFS-PISAIPSAIFSIWHNLSGAMLAGYWASR 299

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|SPO_0797 SPO_0797 "bile acid transporter family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 185 (70.2 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 73/285 (25%), Positives = 129/285 (45%)

Query:    22 LGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTP-I 80
             L  +MF++ ++ +  DF    + P  +  G   QFVV P+L   F  + ++    P P I
Sbjct:    23 LAVVMFSIAIDLTLDDFRRLSRGPKPVLVGLFSQFVVLPVL--TFALVWLTA---PHPSI 77

Query:    81 GAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLP- 139
               G++LV+   G  +SN+ T       A LS+ MT+ +T  A+ +TP  ++ L G   P 
Sbjct:    78 ALGLILVAACPGGNISNFITHRAGGNAA-LSVSMTAFATVGAIVMTPA-NIALWGSLYPP 135

Query:   140 ---------VDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCV 190
                      +D   +  ++  ++++P+  G+ LN   P +   +R  L  LS+ +    +
Sbjct:   136 TRAILQETHIDPVQIAITVGLMLILPLILGVTLNMRRPALTARLRRPLQLLSMGIFIAFI 195

Query:   191 GAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETG 250
                LA N    +S F           +  A   G+VV  L     +D    +R ++ ETG
Sbjct:   196 ILALAANWGYFLS-FAGAVAGLVILHNALALGGGWVVATLTRLSPYD----RRAVTIETG 250

Query:   251 MQSSLLALALANRFFQD-PLVSVPPAISTVIMSLMGFFLVMLWAK 294
             +Q+S L L L   FF     ++V  A   +  ++ G  L M+ ++
Sbjct:   251 IQNSGLGLVLIFAFFNGLGGMAVAAAFWGIWHAISGLGLAMIMSR 295

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0015721 "bile acid and bile salt transport" evidence=ISS

UNIPROTKB|F6PLG8 SLC10A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 76/283 (26%), Positives = 133/283 (46%)

Query:    25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGI 84
             +MF++G N   K F+   KRP  I  G++ QF + P+ G+I   +SV+ F +  P+ A +
Sbjct:     2 VMFSMGCNVEIKKFLGHIKRPWGICVGFLCQFGIMPLTGFI---LSVA-FDI-LPLQAVV 56

Query:    85 MLV-SCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVK 143
             +L+  C  G   SN   +  D  +  LSI MT+ ST  A+ + PL   L I  ++ VD  
Sbjct:    57 VLIMGCCPGGTASNILAYWVDGDM-DLSISMTTCSTLLALGMMPLC--LFIYTKMWVDSG 113

Query:   144 GMV------SSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL-SVLVTACCVGAPLAI 196
              +V       + L  +VVP++ G+L+N  +P+    I        ++L+    V   +  
Sbjct:   114 TIVIPFDNIGTSLVALVVPVSIGMLVNHKWPQKAKIILKVGSITGAILIVLIAVVGGILY 173

Query:   197 NIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLL 256
                 +++P           F L+ +  G+++  ++    H      RT++ ETGMQ++ L
Sbjct:   174 QSAWIIAP---KLWIIGTLFPLAGYSLGFLLARISGQSWHRC----RTVALETGMQNTQL 226

Query:   257 ALALAN-RFFQDPL--VSVPPAISTVI-MSLMGFFLVMLWAKK 295
                +    F Q+ L  V   P I ++  ++    FL +  A K
Sbjct:   227 CSTIVQLSFTQEELNVVFTFPLIYSIFQLAFAAIFLGIYVAYK 269

GO:0016021 "integral to membrane" evidence=IEA

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q650U0	BASS5_ORYSJ	No assigned EC number	0.7676	1.0	0.7406	yes	no
Q8VYY4	BASS6_ARATH	No assigned EC number	0.7845	1.0	0.7261	yes	no
B8BDK4	BASS5_ORYSI	No assigned EC number	0.7676	1.0	0.7406	N/A	no
O34524	YOCS_BACSU	No assigned EC number	0.3400	0.9461	0.8753	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	297
COG0385	319	COG0385, COG0385, Predicted Na+-dependent transpor	3e-43
TIGR00841	286	TIGR00841, bass, bile acid transporter	3e-40
pfam01758	188	pfam01758, SBF, Sodium Bile acid symporter family	2e-34

>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]

 Score =  150 bits (380), Expect = 3e-43
 Identities = 102/294 (34%), Positives = 154/294 (52%), Gaps = 11/294 (3%)

Query: 2   LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPI 61
           +A +FP +F W        AL  +MF +G+  S +DF+   K P  +  G   QFV+ P+
Sbjct: 25  IAPIFPETFGWL-GSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPL 83

Query: 62  LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT 121
           L  +       +F LP  +  G++L+ C  G   SN  T+L    +A LS+  TS+ST  
Sbjct: 84  LALLLA----KLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVA-LSVCSTSVSTLL 138

Query: 122 AVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 181
             F+TPLL  LL G  +PVDV GM  SIL  V++P   G LL    P+    ++  LPP+
Sbjct: 139 GPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPV 198

Query: 182 SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL 241
           SVL     V A  +  +E+ +   GL I + +I  +L   + GY    L   +    KA 
Sbjct: 199 SVLSILLIVYAAFSAAVENGIW-SGLLIFVAVILHNLLGLLLGYFGARLLGFD----KAD 253

Query: 242 QRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKK 295
           + T++ E GMQ+  L  ALA  FF +PL+++P AI +V  ++ G  L  L+A++
Sbjct: 254 EITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARR 307

Length = 319

>gnl|CDD|188087 TIGR00841, bass, bile acid transporter

 Score =  141 bits (357), Expect = 3e-40
 Identities = 81/282 (28%), Positives = 136/282 (48%), Gaps = 15/282 (5%)

Query: 17  YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGL 76
                L  +MF++G     +DF    ++P  +  G + Q+ + P+ G++       VF L
Sbjct: 9   ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLA----KVFKL 64

Query: 77  PTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK 136
           P  +  G+++V C  G   SN  T+L    +A LSI MT+ ST  A+ + PLL  +    
Sbjct: 65  PPELAVGVLIVGCCPGGTASNVFTYLLKGDMA-LSISMTTCSTLLALGMMPLLLYIYAKM 123

Query: 137 RLPVDVKGMVSSI---LQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAP 193
            +   +      I   L IV++P++ G+L+    P+I   I   +  +SV + +  +   
Sbjct: 124 WVDGTLVVPYLGIGLSLVIVLIPVSIGMLVKHKLPQIAKIIL-KVGLISVFLLSVIIAVV 182

Query: 194 LAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQS 253
             IN+E+ ++  G  +LL+ I   L+ F+ GY++  LA        A  RT+S E GMQ+
Sbjct: 183 GGINVEN-LATIGPLLLLVGILLPLAGFLLGYLLAKLAGLP----WARCRTISIEVGMQN 237

Query: 254 SLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKK 295
           S L   +A   F  P V+VP AI  +I +L      +L+   
Sbjct: 238 SQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLII 278

The Bile Acid:Na+ Symporter (BASS) Family (TC 2.A.28) Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 286

>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family

 Score =  123 bits (310), Expect = 2e-34
 Identities = 66/192 (34%), Positives = 101/192 (52%), Gaps = 10/192 (5%)

Query: 19  APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 78
              L  +MF++G+    +DF E F+RP A+  G + Q+V+ P+L +I       +  LP 
Sbjct: 1   PLGLFLMMFSMGLKVRYEDFKELFRRPKALLLGLLLQWVIMPLLMFILAWF---LLRLPP 57

Query: 79  PIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL 138
            +  G++LV C  G  +SN  T+L    +  LS+VM +LST TA  VTPLLS LL G  L
Sbjct: 58  ELAVGLILVGCAPGGAMSNVWTYLAKGDVE-LSVVMVALSTLTAPLVTPLLSFLLSGLLL 116

Query: 139 PVDVK----GMVSSILQIVVVPIAAGLLLNRFFPR--ICNAIRPFLPPLSVLVTACCVGA 192
            V        ++ S+L  V++P+ AG+L   F PR      I P LPP+S++     +  
Sbjct: 117 DVGTAVSPLSLIKSVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLIGLLLTIVV 176

Query: 193 PLAINIESVMSP 204
             ++  E + S 
Sbjct: 177 IFSLKGEVIASL 188

This family consists of Na+/bile acid co-transporters. These transmembrane proteins function in the liver in the uptake of bile acids from portal blood plasma a process mediated by the co-transport of Na+. Also in the family is ARC3 from S. cerevisiae, this is a putative transmembrane protein involved in resistance to arsenic compounds. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	297
COG0385	319	Predicted Na+-dependent transporter [General funct	100.0
TIGR00841	286	bass bile acid transporter. Functionally character	100.0
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	100.0
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	100.0
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	100.0
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	100.0
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	99.95
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	98.97
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	98.87
PRK09903	314	putative transporter YfdV; Provisional	98.86
COG0679	311	Predicted permeases [General function prediction o	98.68
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	98.67
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	98.4
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	98.22
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	98.2
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	97.94
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	97.93
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.51
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	97.43
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	96.6
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	96.49
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	96.4
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	96.27
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	96.24
PLN03159	832	cation/H(+) antiporter 15; Provisional	95.71
PRK05326	562	potassium/proton antiporter; Reviewed	95.46
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	95.29
PRK09903	314	putative transporter YfdV; Provisional	95.29
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	95.17
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	94.82
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.69
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	93.91
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.75
PRK10711	231	hypothetical protein; Provisional	93.1
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	93.03
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	92.92
PRK04288	232	antiholin-like protein LrgB; Provisional	92.89
COG0679	311	Predicted permeases [General function prediction o	92.3
TIGR00698	335	conserved hypothetical integral membrane protein.	91.96
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	91.57
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	91.56
PRK10669	558	putative cation:proton antiport protein; Provision	91.16
COG2855	334	Predicted membrane protein [Function unknown]	91.07
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	89.08
PRK04972	558	putative transporter; Provisional	88.49
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	87.28
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	87.25
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	87.19
TIGR01109	354	Na_pump_decarbB sodium ion-translocating decarboxy	85.43
PRK15086	372	ethanolamine utilization protein EutH; Provisional	84.51
PRK15475	433	oxaloacetate decarboxylase subunit beta; Provision	84.38
PRK15477	433	oxaloacetate decarboxylase subunit beta; Provision	84.36
PRK15476	433	oxaloacetate decarboxylase subunit beta; Provision	84.32
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	84.03
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	83.33
PRK03818	552	putative transporter; Validated	82.07
PRK04972	558	putative transporter; Provisional	81.34
TIGR01625	154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	81.12
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	80.96
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	80.7

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=100.00  E-value=9.6e-56  Score=401.78  Aligned_cols=284  Identities=36%  Similarity=0.599  Sum_probs=271.0

Q ss_pred             eeeecCCccccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHH
Q 022453            2 LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIG   81 (297)
Q Consensus         2 ~~~~~P~~~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~   81 (297)
                      ++..+|+.+.|+ +.++++.++++||.+|++++.+|+++..||||.++.++.+||++||+++++++    +.+++||+.+
T Consensus        25 ~~~~~~~~~~~~-~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~----~~~~l~~~l~   99 (319)
T COG0385          25 IAPIFPETFGWL-GSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLA----KLFPLPPELA   99 (319)
T ss_pred             HHHhccccchhh-hHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH----HHcCCCHHHH
Confidence            356788999999 58899999999999999999999999999999999999999999999999998    8899999999


Q ss_pred             HHHHHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHH
Q 022453           82 AGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGL  161 (297)
Q Consensus        82 ~gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~  161 (297)
                      .|+++++|||||+.||+||+++|||++ +|+++|.+||+++++++|+++.++.|+.+++|.++++.++++.+++|..+|+
T Consensus       100 ~Gl~ll~~~Pggv~S~~~t~lAkGnVa-lsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~  178 (319)
T COG0385         100 VGLLLLGCCPGGVASNAMTYLAKGNVA-LSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQ  178 (319)
T ss_pred             HhHHheeeCCCchhHHHHHHHhcCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccch
Q 022453          162 LLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL  241 (297)
Q Consensus       162 ~lr~~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~  241 (297)
                      .+|++.|++.++.+|.+++++..+++++++..++.+.+.+.+. +..+.....+++..++..||+.+|++|+|++|    
T Consensus       179 ~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~-~~~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~----  253 (319)
T COG0385         179 LLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS-GLLIFVAVILHNLLGLLLGYFGARLLGFDKAD----  253 (319)
T ss_pred             HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh----
Confidence            9999999999999999999999999999999999998887764 45677788999999999999999999999999    


Q ss_pred             hheeeeeecccchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 022453          242 QRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS  296 (297)
Q Consensus       242 ~~al~~~~g~rN~~la~~la~~~f~~p~~~lp~~~~~~~q~i~~~~~a~~~~~~~  296 (297)
                      ++|+++|.|+||.++|+++|..+|+||++++|.++|+++|++.+++++.+|+||.
T Consensus       254 ~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~  308 (319)
T COG0385         254 EITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRI  308 (319)
T ss_pred             eeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999776699999999999999999999999999973

>TIGR00841 bass bile acid transporter

Probab=100.00  E-value=1e-46  Score=345.08  Aligned_cols=273  Identities=30%  Similarity=0.473  Sum_probs=252.8

Q ss_pred             cccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhc
Q 022453           10 FTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSC   89 (297)
Q Consensus        10 ~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~   89 (297)
                      ++++ +++..+.++++||.+|++++.+|+++..||||.+..+++.|++++|+++|+++    +.++++|+.+.|+++++|
T Consensus         3 ~~~~-~~~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~----~~~~l~~~~~~glvL~~~   77 (286)
T TIGR00841         3 STNL-STILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLA----KVFKLPPELAVGVLIVGC   77 (286)
T ss_pred             hhhH-HHHHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHHheee
Confidence            4556 46667779999999999999999999999999999999999999999999998    788999999999999999


Q ss_pred             cCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCc----cccChHHHHHHHhHHHHHHHHHHHHHHH
Q 022453           90 VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKR----LPVDVKGMVSSILQIVVVPIAAGLLLNR  165 (297)
Q Consensus        90 ~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~----~~i~~~~i~~~l~~~vllPl~lG~~lr~  165 (297)
                      |||+++|++||+++|||.+ ++..++.+||+++++++|+++.++.++.    +++|..+++++ +..+++|+.+|+.+|+
T Consensus        78 ~P~~~~s~v~t~~~~gn~~-la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~  155 (286)
T TIGR00841        78 CPGGTASNVFTYLLKGDMA-LSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKH  155 (286)
T ss_pred             CCCchHHHHHHHHhCCCHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            9999999999999999999 9999999999999999999999987653    44999999999 9999999999999999


Q ss_pred             hcccchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhhee
Q 022453          166 FFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTL  245 (297)
Q Consensus       166 ~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al  245 (297)
                      +.|+++++.+| .+.++.+.+.+++...++.+.+.+.+. .+.+.+.+.+++.++|.+||+.+|.+|++++|    +||+
T Consensus       156 ~~p~~~~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~-~~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~----~~t~  229 (286)
T TIGR00841       156 KLPQIAKIILK-VGLISVFLLSVIIAVVGGINVENLATI-GPLLLLVGILLPLAGFLLGYLLAKLAGLPWAR----CRTI  229 (286)
T ss_pred             HhHHHHHHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhh----heee
Confidence            99999998888 899999999888888888888877664 56778889999999999999999999999888    9999


Q ss_pred             eeeecccchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHhhcc
Q 022453          246 SYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS  296 (297)
Q Consensus       246 ~~~~g~rN~~la~~la~~~f~~p~~~lp~~~~~~~q~i~~~~~a~~~~~~~  296 (297)
                      ++|+|+||+++|++++.++|+ |+.++|+++|.++|++.+..++.+|+|+.
T Consensus       230 ~~~~g~qN~~lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~  279 (286)
T TIGR00841       230 SIEVGMQNSQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIH  279 (286)
T ss_pred             eeeeecccHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999997 88999999999999999999999988763

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>TIGR00832 acr3 arsenical-resistance protein

Probab=100.00  E-value=1.3e-46  Score=349.92  Aligned_cols=271  Identities=16%  Similarity=0.223  Sum_probs=237.3

Q ss_pred             eeeecCCccccchhh----h---HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhc-
Q 022453            2 LALVFPPSFTWFTAR----Y---YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSV-   73 (297)
Q Consensus         2 ~~~~~P~~~~~~~~~----~---~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~-   73 (297)
                      +|+.+|+.++|+...    .   ..+.++++||++|++++.||+++.+||||.+..++.+||+++|+++|+++    +. 
T Consensus        22 ~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~----~l~   97 (328)
T TIGR00832        22 LGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLA----WLF   97 (328)
T ss_pred             HHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence            478899998888321    1   22467789999999999999999999999999999999999999999998    54 


Q ss_pred             cCCchhHHHHHHHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcC--------CccccChHHH
Q 022453           74 FGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG--------KRLPVDVKGM  145 (297)
Q Consensus        74 ~~l~~~~~~gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~--------~~~~i~~~~i  145 (297)
                      ++++|+++.|+++++|||||++||+||+++|||++ +|+++|.+|++++++++|++++++.|        +++++|..++
T Consensus        98 ~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnva-lsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~  176 (328)
T TIGR00832        98 LRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPE-YTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETI  176 (328)
T ss_pred             cCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHH
Confidence            59999999999999999999999999999999999 99999999999999999999998876        3578999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHhcccc-----hh-hhccccchHHHHHHHHHHHHHhHhchHHhhhhhH--HHHHHHHHHHH
Q 022453          146 VSSILQIVVVPIAAGLLLNRFFPRI-----CN-AIRPFLPPLSVLVTACCVGAPLAINIESVMSPFG--LTILLLIITFH  217 (297)
Q Consensus       146 ~~~l~~~vllPl~lG~~lr~~~~~~-----~~-~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~--~~~~~~~~~l~  217 (297)
                      +++++.++++|+++|+.+|++.||+     .+ |.+|..+..+.+++.+++...++.|++.+.+..+  ..+..+.++++
T Consensus       177 ~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~  256 (328)
T TIGR00832       177 AKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYF  256 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            9999999999999999999999854     33 6777888888888888888888999888876422  23344677899


Q ss_pred             HHHHHHHHHHHHhhccCcccccchhheeeeeecccchHHHHHHHHHhCCCCcchhhHHHHHH-HH
Q 022453          218 LSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV-IM  281 (297)
Q Consensus       218 ~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p~~~lp~~~~~~-~q  281 (297)
                      ..++.+||+++|.+|++++|    |||+++|+|+||.++|+.+|.++|++++.+.++++|.. +|
T Consensus       257 ~~~~~lg~~~~r~~~l~~~~----~~a~~~e~g~qN~~lai~lA~~~f~~~~~~a~~~~~~~l~e  317 (328)
T TIGR00832       257 YIMFFLTFALAKKLGLPYSI----TAPAAFTGASNNFELAIAVAISLFGLNSGAALATVVGPLIE  317 (328)
T ss_pred             HHHHHHHHHHHHHhCcChhh----hhhheehhhhhhHHHHHHHHHHhCCCCcccHHHHHhhhhhe
Confidence            99999999999999999999    99999999999999999999999987666666666654 44

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=100.00  E-value=8.1e-41  Score=309.28  Aligned_cols=284  Identities=23%  Similarity=0.369  Sum_probs=252.4

Q ss_pred             eeeecCCcccc---ch-hhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhcc--C
Q 022453            2 LALVFPPSFTW---FT-ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVF--G   75 (297)
Q Consensus         2 ~~~~~P~~~~~---~~-~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~--~   75 (297)
                      +|+++|+.+..   .+ |....+.++.++|..|++++.||+++..||+|.+..++..+|+++|++++++.    .++  .
T Consensus        13 la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~----~l~~~~   88 (313)
T PF13593_consen   13 LAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLS----RLFPAF   88 (313)
T ss_pred             HHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----HHhhcc
Confidence            57788987653   32 34567889999999999999999999999999999999999999999999997    555  3


Q ss_pred             CchhHHHHHHHHhccCchhhHH-HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHc-CCccccChHHHHHHHhHHH
Q 022453           76 LPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI-GKRLPVDVKGMVSSILQIV  153 (297)
Q Consensus        76 l~~~~~~gl~l~~~~P~~~~s~-~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~-~~~~~i~~~~i~~~l~~~v  153 (297)
                      .+++.+.|+++++|+|++..|+ +||+.+|||.+ +|+.++.++|+++++++|+++.++. +++.++|..+++.++...+
T Consensus        89 ~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a-~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~v  167 (313)
T PF13593_consen   89 LPPELALGLLILACLPTTVSSSVVLTRLAGGNVA-LALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLTV  167 (313)
T ss_pred             CCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHH-HHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHHH
Confidence            6899999999999999998887 59999999999 9999999999999999999999998 6789999999999999999


Q ss_pred             HHHHHHHHHHHHhcccchhhhccccchHHHHHHHHHHHHHhHhch-HHhhhhhH----HHHHHHHHHHHHHHHHHHHHHH
Q 022453          154 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI-ESVMSPFG----LTILLLIITFHLSAFVAGYVVT  228 (297)
Q Consensus       154 llPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~-~~i~~~~~----~~~~~~~~~l~~~~~~~g~~l~  228 (297)
                      ++|+++|+.+|++.+++.+|.++..+.++...++++++..++.+. +...+..+    ..+....+.++...+.++|..+
T Consensus       168 llP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  247 (313)
T PF13593_consen  168 LLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVLGWLAA  247 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887652 22222111    2334456778888999999999


Q ss_pred             HhhccCcccccchhheeeeeecccchHHHHHHHHHhCCC-C---cchhhHHHHHHHHHHHHHHHHHHHhh
Q 022453          229 GLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQD-P---LVSVPPAISTVIMSLMGFFLVMLWAK  294 (297)
Q Consensus       229 ~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~-p---~~~lp~~~~~~~q~i~~~~~a~~~~~  294 (297)
                      |.+|++++|    ++++.|++++||.+++++++...|++ |   ...+|.++||..|.++++.++.+|+|
T Consensus       248 r~~~~~~~d----~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r  313 (313)
T PF13593_consen  248 RLLGFSRPD----RIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR  313 (313)
T ss_pred             hhcCCChhh----EEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999    99999999999999999999999974 3   57899999999999999999999987

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-31  Score=241.43  Aligned_cols=284  Identities=15%  Similarity=0.222  Sum_probs=247.3

Q ss_pred             eeeecCCccccch-------hhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 022453            2 LALVFPPSFTWFT-------ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVF   74 (297)
Q Consensus         2 ~~~~~P~~~~~~~-------~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~   74 (297)
                      +|..+|+.++.+.       +..+++.+..||+.+.+++|.|++++..|++|.+..++..|+++.|++.|+++   +.++
T Consensus        30 lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm~~la---~~fl  106 (342)
T COG0798          30 LGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLMFALA---WFFL  106 (342)
T ss_pred             HHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence            5778888544432       24467899999999999999999999999999999999999999999999998   3556


Q ss_pred             CCchhHHHHHHHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC-ccccChHHHHHHHhHHH
Q 022453           75 GLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK-RLPVDVKGMVSSILQIV  153 (297)
Q Consensus        75 ~l~~~~~~gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~-~~~i~~~~i~~~l~~~v  153 (297)
                      ++.|++.+|+++++.+||..++.+|+++++||.+ ++..+++++.++++++.|.+..++.+. ++++|++++.++++..+
T Consensus       107 ~~~pey~~GlILlglApC~aMVivw~~La~Gd~~-~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl  185 (342)
T COG0798         107 PDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRE-LTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYL  185 (342)
T ss_pred             CCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHh-hhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999 999999999999999999999999875 48999999999999999


Q ss_pred             HHHHHHHHHHHHhcccc------hhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhH--HHHHHHHHHHHHHHHHHHH
Q 022453          154 VVPIAAGLLLNRFFPRI------CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFG--LTILLLIITFHLSAFVAGY  225 (297)
Q Consensus       154 llPl~lG~~lr~~~~~~------~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~--~~~~~~~~~l~~~~~~~g~  225 (297)
                      .+|+++|++.|+...|+      .+|..|..++++..++.+.+...++.+.|.+.+++.  ..+.....+.....+.++|
T Consensus       186 ~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~~~~i~~  265 (342)
T COG0798         186 GIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLLMFFISY  265 (342)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999875432      367888889999999999999999999999988742  1334455677788889999


Q ss_pred             HHHHhhccCcccccchhheeeeeecccchHHHHHHHHHhCC-CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 022453          226 VVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPAISTVIMSLMGFFLVMLWA  293 (297)
Q Consensus       226 ~l~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~-~p~~~lp~~~~~~~q~i~~~~~a~~~~  293 (297)
                      +.+|..|++.+|    ++++++.++.+|..+|+++|.+.|+ +..+++.+++..++|..+--.++..++
T Consensus       266 ~i~k~lgl~y~~----~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vigpLvEVpvml~lV~v~~  330 (342)
T COG0798         266 FIAKALGLPYED----AAALVFTGASNNFELAIAVAIALFGLTSGAALATVVGPLVEVPVMLGLVKVAL  330 (342)
T ss_pred             HHHHHhCCChhh----hhceeeeeccccHHHHHHHHHHhcCccccchhhhhccchhhHHHHHHHHHHHH
Confidence            999999999999    9999999999999999999999998 667788788888888776665555444

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=100.00  E-value=6.2e-33  Score=239.24  Aligned_cols=181  Identities=30%  Similarity=0.555  Sum_probs=156.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH
Q 022453           19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY   98 (297)
Q Consensus        19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~   98 (297)
                      ++.++++||++|++++.||+++..||||.+..++++|++++|+++|++++   .+++++|+++.|+++++|||||+.||+
T Consensus         1 ~i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~---~~~~~~~~~~~Gl~l~~~~P~~~~s~~   77 (187)
T PF01758_consen    1 PILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAW---LLLPLSPALALGLLLVAACPGGPASNV   77 (187)
T ss_dssp             --HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH----HHTT--HHHHHHHHHHHHS-B-THHHH
T ss_pred             ChhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHhcCCcHHHHHH
Confidence            35789999999999999999999999999999999999999999999973   778999999999999999999999999


Q ss_pred             HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---hHHHHHHHhHHHHHHHHHHHHHHHhcc--cchhh
Q 022453           99 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD---VKGMVSSILQIVVVPIAAGLLLNRFFP--RICNA  173 (297)
Q Consensus        99 ~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~---~~~i~~~l~~~vllPl~lG~~lr~~~~--~~~~~  173 (297)
                      ||+++|||.+ +|+++|.++++++++++|+++.++.+...+.|   ..++..+++..+++|+++|+++|++.|  +.+++
T Consensus        78 ~t~l~~Gd~~-ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~~~~~~  156 (187)
T PF01758_consen   78 FTYLAGGDVA-LSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPREKFARR  156 (187)
T ss_dssp             HHHHTT--HH-HHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-GGG-HH
T ss_pred             HHHHhCCCcc-cccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHHHHHHH
Confidence            9999999999 99999999999999999999999988776666   899999999999999999999999999  88899


Q ss_pred             hccccchHHHHHHHHHHHHHhHhchHHhhh
Q 022453          174 IRPFLPPLSVLVTACCVGAPLAINIESVMS  203 (297)
Q Consensus       174 ~~~~~~~~s~~~llliv~~~~~~~~~~i~~  203 (297)
                      ++|..+.++..++++++...++.|.+.+.+
T Consensus       157 ~~~~~~~~s~~~l~~~i~~~~~~~~~~i~~  186 (187)
T PF01758_consen  157 LKPFLKPLSFILLLLIIVLIFASNASVIAS  186 (187)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHTH-----
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhcccccC
Confidence            999999999999999998888988887654

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.8e-28  Score=227.91  Aligned_cols=260  Identities=43%  Similarity=0.688  Sum_probs=227.8

Q ss_pred             CccccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH
Q 022453            8 PSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLV   87 (297)
Q Consensus         8 ~~~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~   87 (297)
                      ..+.|+...+.++.+...|+++|++.|.+|+++.++||+.+..|++.|++++|+.+|.+.    ..+.++...+.|.+++
T Consensus       105 ~~~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~----~~~~lP~~~~ag~~Lv  180 (371)
T KOG2718|consen  105 LAFTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLS----KVLLLPAALAAGLLLV  180 (371)
T ss_pred             ccceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhh----hHhhCCccccceeEEE
Confidence            667888767778899999999999999999999999999999999999999999999987    7777777776788888


Q ss_pred             hccCchhhHH-HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHHHHHHh
Q 022453           88 SCVSGAQLSN-YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRF  166 (297)
Q Consensus        88 ~~~P~~~~s~-~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~~lr~~  166 (297)
                      .|++++..++ +++..-+||.. +++.+|.++|+.+++++|++-..+.+..++.|...+..+.+..+.+|+.+|.++|++
T Consensus       181 tc~~p~g~~~~~~~~~~~g~v~-lsilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~~~vv~~pl~lG~lL~~~  259 (371)
T KOG2718|consen  181 TCVSPGGGGNYLTSKRLPGDVT-LSILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASILQVVGLPLALGLLLNKW  259 (371)
T ss_pred             EeccCCcchhhheeecCCcchh-hHHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhhhHHhHHHHHHHHHhccc
Confidence            8877766665 55656699999 999999999999999999999999888888888888878889999999999999999


Q ss_pred             cccchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheee
Q 022453          167 FPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLS  246 (297)
Q Consensus       167 ~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~  246 (297)
                      +||..+.+++..+.++.+...+.+......|.+.+.. .++.++..+..+++.+|..||+.++..+ ++ +  +++||++
T Consensus       260 ~~k~t~~i~~~~~~vsv~~t~l~~~~p~~~n~~~~~~-~~~~i~~~~~~l~l~g~l~~Y~~~~~~~-~~-~--a~~~tis  334 (371)
T KOG2718|consen  260 FPKRTVAIEPGLPPVSVCLTILCLAFPPGENGYLFLF-FGYQILLLGAALPLAGFLAGYLLSFSPL-DD-V--ATARTIS  334 (371)
T ss_pred             CccceeeeecCCCchHHHhhhhhhcCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccc-ch-h--hhhcchH
Confidence            9999999999999999999999888777888887777 6888999999999999999999974321 22 2  3489999


Q ss_pred             eeecccchHHHHHHHHHhCCCCcchhhHHHH
Q 022453          247 YETGMQSSLLALALANRFFQDPLVSVPPAIS  277 (297)
Q Consensus       247 ~~~g~rN~~la~~la~~~f~~p~~~lp~~~~  277 (297)
                      +|+|+||..++...++..++||....|+..-
T Consensus       335 ie~g~q~s~~a~~l~t~~~~dpl~~~~~~~s  365 (371)
T KOG2718|consen  335 IETGMQNSLLALALATKHLQDPLVVVPPATS  365 (371)
T ss_pred             HHhccchhHHHHHHhhcccCCceeeeccchh
Confidence            9999999999999999999988776665543

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=98.97  E-value=4.5e-09  Score=97.91  Aligned_cols=110  Identities=16%  Similarity=0.221  Sum_probs=97.9

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhh
Q 022453           16 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL   95 (297)
Q Consensus        16 ~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~   95 (297)
                      ..-.....+.|+..|.+++.++.+   ++.|........++++.|++++++.    ..++++++.....++++++|++..
T Consensus       211 ~lg~~~~plaLl~lG~~l~~~~~~---~~~~~~~~~~~~klil~P~i~~~~~----~~~~l~~~~~~~~vl~aa~P~a~~  283 (321)
T TIGR00946       211 ILSGATTPMALFSLGLALSPRKIK---LGVRDAILALIVRFLVQPAVMAGIS----KLIGLRGLELSVAILQAALPGGAV  283 (321)
T ss_pred             HHHHHHHHHHHHHHHHhhChhhhc---cChHHHHHHHHHHHHHHHHHHHHHH----HHhCCChHHHHHHHHHHcCChhhH
Confidence            334567888999999998877654   3556678888899999999999997    889999999999999999999999


Q ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 022453           96 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  133 (297)
Q Consensus        96 s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll  133 (297)
                      +.++++..|+|.+ .+...+.+||+++.+++|++..++
T Consensus       284 ~~i~A~~y~~~~~-~aa~~v~~sT~ls~~tlp~~~~l~  320 (321)
T TIGR00946       284 AAVLATEYEVDVE-LASTAVTLSTVLSLISLPLFIILL  320 (321)
T ss_pred             HHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999 999999999999999999998864

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=98.87  E-value=2.4e-09  Score=91.99  Aligned_cols=168  Identities=14%  Similarity=0.240  Sum_probs=122.8

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH-H
Q 022453           21 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-A   99 (297)
Q Consensus        21 ~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~-~   99 (297)
                      ..+-+++..|++++.|++....+++|..++++...+.+.|-..|.+.+. ...-+.|+++..|+.+.+|+|++.+|++ .
T Consensus        59 ~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~~Ll~tPs~~~Lf~~~-~~~~~i~~wLl~GL~~~~CMPttvSS~ViL  137 (287)
T KOG4821|consen   59 CVAWIFLQSGLGLKTESLMAAMLNWRLHLFILILSLLITPSIVYLFCCA-VKAAKIDDWLLIGLILTACMPTTVSSNVIL  137 (287)
T ss_pred             EEEEEEeecCccccHHHHHHHHhCCchHHHHHHHHHHHhHHHHHHHHHH-HhCcchhHHHHhhheeeeecCCccccceee
Confidence            4556678999999999999999999999999999999999999988630 1222467899999999999999999997 7


Q ss_pred             HHHcCCCCcchHHH-HHHHHHHHHHHHHHHHHHHHcCC-c-----------cccChHHHHHHHhHHHHHHHHHHHHHHHh
Q 022453          100 TFLTDPPLAPLSIV-MTSLSTATAVFVTPLLSLLLIGK-R-----------LPVDVKGMVSSILQIVVVPIAAGLLLNRF  166 (297)
Q Consensus       100 t~~~~Gd~~~ls~~-lt~~st~l~~~~~Pl~~~ll~~~-~-----------~~i~~~~i~~~l~~~vllPl~lG~~lr~~  166 (297)
                      |..+|||.+ .... ....+.+.+....|-....++.+ .           +-.-+.-++.+....+++|...|...+..
T Consensus       138 T~~aGGNa~-A~~v~S~f~g~L~~~~i~~~l~q~LL~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~  216 (287)
T KOG4821|consen  138 TTNAGGNAS-ALCVCSVFIGNLLGAFITPALVQMLLNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNC  216 (287)
T ss_pred             eeccCccHH-HHHHHHHHHHHHhhhHHHHHHHHHHHccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccc
Confidence            999999997 4433 33355666666666666655421 1           11223445677778899999999999999


Q ss_pred             cccchh----hhccccchHHHHHHHHHH
Q 022453          167 FPRICN----AIRPFLPPLSVLVTACCV  190 (297)
Q Consensus       167 ~~~~~~----~~~~~~~~~s~~~llliv  190 (297)
                      +|+-+.    ..++.--++.....+.+.
T Consensus       217 ~~~~~~~~~~~~k~~~i~i~~~~~l~~~  244 (287)
T KOG4821|consen  217 FPKGTAYYLGFLKKYHIKIGSYMLLLIM  244 (287)
T ss_pred             cCCceeEEeeccccccchhhHHHHHHHH
Confidence            887543    233333334444444443

>PRK09903 putative transporter YfdV; Provisional

Probab=98.86  E-value=1.1e-08  Score=95.07  Aligned_cols=120  Identities=14%  Similarity=0.086  Sum_probs=98.6

Q ss_pred             ecCCccccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHH
Q 022453            5 VFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGI   84 (297)
Q Consensus         5 ~~P~~~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl   84 (297)
                      -.|+..+...+..-.....+.|+..|.++...+++   ++ +....+.+.++++.|++.+++.    ..++++++.....
T Consensus       191 ~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~---~~-~~~~~~~~~Kli~~P~i~~~~~----~~~~l~~~~~~v~  262 (314)
T PRK09903        191 KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE---FS-AEIAYNTFLKLILMPLALLLVG----MACHLNSEHLQMM  262 (314)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cc-HHHHHHHHHHHHHHHHHHHHHH----HHcCCCcHHHHHH
Confidence            34554333322333567888899999998777643   22 3456777889999999999886    7789999999999


Q ss_pred             HHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 022453           85 MLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  133 (297)
Q Consensus        85 ~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll  133 (297)
                      ++++++|++..+.++++..|+|.+ ++.....+||+++.+++|++++++
T Consensus       263 vl~aa~P~a~~~~i~A~~y~~~~~-~aa~~v~~sTlls~iTlpl~~~l~  310 (314)
T PRK09903        263 VLAGALPPAFSGIIIASRFNVYTR-TGTASLAVSVLGFVVTAPLWIYVS  310 (314)
T ss_pred             HHHHcccHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999 999999999999999999999865

>COG0679 Predicted permeases [General function prediction only]

Probab=98.68  E-value=1.9e-07  Score=86.84  Aligned_cols=126  Identities=17%  Similarity=0.229  Sum_probs=102.5

Q ss_pred             eeecCCccccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHH
Q 022453            3 ALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGA   82 (297)
Q Consensus         3 ~~~~P~~~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~   82 (297)
                      ++-.|+......+..-.....+.|+..|.+++.++.++  .+++........++++.|+.++...    +.++++++...
T Consensus       184 ~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~--~~~~~~~~~~~~kll~~Pl~~~~~~----~~~~l~~~~~~  257 (311)
T COG0679         184 GISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKG--SKPPIILIALSLKLLLAPLVALLVA----KLLGLSGLALQ  257 (311)
T ss_pred             CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhcc--ccchhHHHHHHHHHHHHHHHHHHHH----HHcCCChHHHH
Confidence            34455533333223345678899999999999944432  3345566667779999999999998    89999999999


Q ss_pred             HHHHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022453           83 GIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG  135 (297)
Q Consensus        83 gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~  135 (297)
                      .+++++++|++..+.++++..|+|.+ ++.....+||.++.+++|.+..++.+
T Consensus       258 v~vl~~a~P~A~~~~v~a~~~~~~~~-laa~~i~ist~ls~~t~p~~~~~l~~  309 (311)
T COG0679         258 VLVLLSAMPTAVNAYVLARQYGGDPR-LAASTILLSTLLSLLTLPLLILLLLR  309 (311)
T ss_pred             HHHHHhhCcHHhHHHHHHHHhCCChH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999 99999999999999999999887643

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=98.67  E-value=1.7e-08  Score=94.66  Aligned_cols=248  Identities=17%  Similarity=0.186  Sum_probs=175.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHH-HHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHHHH
Q 022453           22 LGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFV-VKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYAT  100 (297)
Q Consensus        22 l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v-~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t  100 (297)
                      +...|+..|++.+.++++++.++++.+......++- ++|...+...    ..+..++..+.......|+|++..+|.++
T Consensus        50 L~~~~~~~~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~----v~~~~~~~~~~t~l~~~~~~~gl~~~~ls  125 (371)
T KOG2718|consen   50 LNFVMFSLGCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLK----VLFLLDPLLAFTWLVTGCFPPGLLSNMLS  125 (371)
T ss_pred             HhHhhcccccceeccchhhhhcCcceeeeehhhccccchhHHHHHHH----HHhhcCCcccceEEEeCccccHHHHHHHH
Confidence            568999999999999999999999888888889999 9999999997    77888888899999999999999999999


Q ss_pred             HHcCCCCcchHHHHHHHHHHHHHHHHH-HHHHH----HcCCccccChHHHHHHHhHHHHHHHHHHHHHHHhcccchhhhc
Q 022453          101 FLTDPPLAPLSIVMTSLSTATAVFVTP-LLSLL----LIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIR  175 (297)
Q Consensus       101 ~~~~Gd~~~ls~~lt~~st~l~~~~~P-l~~~l----l~~~~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~~~~~~~  175 (297)
                      .-.++|.+ ....++.-.+.+.+..+| +++.=    +.+.....|...-..-++..-..|...|..+++.+++-...+.
T Consensus       126 ~g~~~~~~-~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~ls  204 (371)
T KOG2718|consen  126 FGIKLDMD-LFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLS  204 (371)
T ss_pred             HhcCccHH-HHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhH
Confidence            99999999 999999888888887777 22221    1222333333221223467788899999999998877666677


Q ss_pred             cccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHhhccCcccccchhheeeeeecccc
Q 022453          176 PFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA--FVAGYVVTGLAFAEAHDVKALQRTLSYETGMQS  253 (297)
Q Consensus       176 ~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~--~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN  253 (297)
                      +.+..++.++.+.+.-.......+.+.......+..  -.+...+  +.+|+++.+.+     .    +++..++.++||
T Consensus       205 ilmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~--s~~~vv~~pl~lG~lL~~~~-----~----k~t~~i~~~~~~  273 (371)
T KOG2718|consen  205 ILMTTISTVLAVILTPLLSILLGRALIPVDALGVIA--SILQVVGLPLALGLLLNKWF-----P----KRTVAIEPGLPP  273 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhh--hhhHHhHHHHHHHHHhcccC-----c----cceeeeecCCCc
Confidence            766666665555443222222222222211222222  3344444  77888777432     2    689999999999


Q ss_pred             hHHHHHHHHHhCCCCc----chhhHHHHHHHHHHHHHH
Q 022453          254 SLLALALANRFFQDPL----VSVPPAISTVIMSLMGFF  287 (297)
Q Consensus       254 ~~la~~la~~~f~~p~----~~lp~~~~~~~q~i~~~~  287 (297)
                      .++...+..-.|+ ++    .... ..|.++|...+..
T Consensus       274 vsv~~t~l~~~~p-~~~n~~~~~~-~~~~i~~~~~~l~  309 (371)
T KOG2718|consen  274 VSVCLTILCLAFP-PGENGYLFLF-FGYQILLLGAALP  309 (371)
T ss_pred             hHHHhhhhhhcCC-hhhhhHHHHH-HHHHHHHHHHHHH
Confidence            9999888877776 33    2222 4566666444333

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=98.40  E-value=6.9e-06  Score=75.41  Aligned_cols=209  Identities=16%  Similarity=0.223  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHH-HHHHHhccCchhhH
Q 022453           18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGA-GIMLVSCVSGAQLS   96 (297)
Q Consensus        18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~-gl~l~~~~P~~~~s   96 (297)
                      ..+.+++.+|++|.+++.|+..+.+||-..+   +..++++--++++.++    ++++.|.-.-+ .+.+++++-..+-+
T Consensus        47 ~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l---~~~K~~~~~~~g~~~~----~~~g~~g~~Gls~laiiaa~~~~Ng~  119 (312)
T PRK12460         47 AAPLLGAFLLCMGAQISLKAAPQALLKGGVL---TITKLGVAIVIGLLVG----KFFGAEGIFGLSGLAIVAAMSNSNGG  119 (312)
T ss_pred             hHHHHHHHHHHhcCeeeccccchhhhhhhhh---hhHHHHHHHHHHHHHH----HHcCcccccchHHHHHHHHHhcCcHH
Confidence            3578999999999999999999888875432   3457777777888887    78886542211 12223333322222


Q ss_pred             H--HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC--ccccChHHHHHHHhHHHHHHHHHHHHHHHhcccchh
Q 022453           97 N--YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICN  172 (297)
Q Consensus        97 ~--~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~--~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~~~~  172 (297)
                      -  ..+...|-+.+--+..      +.++---|+...+-.+.  -.++|+..+     .-.++|+++|+.++...+++.+
T Consensus       120 ly~al~~~yG~~~d~gA~~------~~sl~~GPf~tm~aLga~gLA~ip~~~l-----v~lilpILiGmilGNld~~~~~  188 (312)
T PRK12460        120 LYAALMGEFGDERDVGAIS------ILSLNDGPFFTMLALGAAGLANIPIMAL-----VAALLPLVLGMILGNLDPDMRK  188 (312)
T ss_pred             HHHHHHHHcCCHhhhhHHh------hhhhccCcHHHHHHHHHHHHhcCChHHH-----HHHHHHHHHHHHHhccchhhHH
Confidence            1  1233333333302222      22333334444333332  124554432     3489999999999998877777


Q ss_pred             hhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheeeeeeccc
Q 022453          173 AIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQ  252 (297)
Q Consensus       173 ~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~r  252 (297)
                      ..++-.+.   ...+.++..-...|.+++.+ .|+..++..++.....+..+|+++|++|.++      +.+....+..-
T Consensus       189 ~l~~Gi~f---~I~f~~f~LG~~lnl~~I~~-~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~------~~g~li~stAG  258 (312)
T PRK12460        189 FLTKGGPL---LIPFFAFALGAGINLSMLLQ-AGLAGILLGVLVTIVTGFFNIFADRLVGGTG------IAGAAASSTAG  258 (312)
T ss_pred             HHhccceE---eHHHHHHHhcCCeeHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHhCCCh------hHHHHHHHHhh
Confidence            77776554   11122222234456677766 3666666666677788899999999985444      33444443344


Q ss_pred             ch
Q 022453          253 SS  254 (297)
Q Consensus       253 N~  254 (297)
                      |.
T Consensus       259 nA  260 (312)
T PRK12460        259 NA  260 (312)
T ss_pred             HH
Confidence            54

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=98.22  E-value=0.00048  Score=63.18  Aligned_cols=262  Identities=16%  Similarity=0.280  Sum_probs=144.8

Q ss_pred             ecCCccccc---hhh---hHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCch
Q 022453            5 VFPPSFTWF---TAR---YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT   78 (297)
Q Consensus         5 ~~P~~~~~~---~~~---~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~   78 (297)
                      ++|+.++..   .+.   -..+.+++.+|++|.+++.|+..+.+||-..+   ++.++++--++++.+.    ++++.+.
T Consensus        28 f~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~l---l~~K~~~~~~lgl~~~----~~fg~~G  100 (314)
T PF03812_consen   28 FFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVL---LLVKFIIGALLGLLVG----KFFGPEG  100 (314)
T ss_pred             cCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHH---HHHHHHHHHHHHHHHH----HHcCccc
Confidence            678776532   111   13568999999999999999999999875433   3567888778888887    7787653


Q ss_pred             h---HHH---HHHHHhccCchhhHH--HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC--ccccChHHHHHH
Q 022453           79 P---IGA---GIMLVSCVSGAQLSN--YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RLPVDVKGMVSS  148 (297)
Q Consensus        79 ~---~~~---gl~l~~~~P~~~~s~--~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~--~~~i~~~~i~~~  148 (297)
                      -   ...   .+.+++++-..+-+-  ..+...|-+.+  .-..    .++++..-|+.-.+.+|.  ..++|+..+   
T Consensus       101 i~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D--~gA~----~i~sl~~GPf~tMl~LG~sG~a~ip~~~l---  171 (314)
T PF03812_consen  101 IQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEED--VGAF----SILSLNDGPFFTMLALGASGLANIPWMSL---  171 (314)
T ss_pred             cccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHH--hHHH----HHHHhhhhHHHHHHHHhhccccCCCHHHH---
Confidence            1   112   233444444443332  23333333333  2222    344455556665555553  356787654   


Q ss_pred             HhHHHHHHHHHHHHHHHhcccchhhhccccchHHHHHHHHH-HHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022453          149 ILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACC-VGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVV  227 (297)
Q Consensus       149 l~~~vllPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llli-v~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l  227 (297)
                        +-.++|+++|+.+-..-|++.|.++|-.+.+    +-+. ...--..|.+.+.+. |..-++..++...+.....|+.
T Consensus       172 --v~~llP~iiG~iLGNLD~~~r~fl~~~~~~l----IPF~~f~lGa~inl~~i~~a-Gl~GIlLgv~~~~vtg~~~~~~  244 (314)
T PF03812_consen  172 --VAALLPIIIGMILGNLDPDFRKFLAPGVPIL----IPFFGFALGAGINLSNIIKA-GLSGILLGVIVVVVTGIPLYLA  244 (314)
T ss_pred             --HHHHHHHHHHHHHhcCCHHHHHHHhcCCCee----eehhhhhhcCCCCHHHHHHh-CcchHHHHHHHHHHHhHHHHHH
Confidence              5788999999999988887776666544321    1111 011123455556553 3322222333333444455667


Q ss_pred             HHhhccCcccccchhheeeeeecccchHHHHHHHHHhCCCCc----c--hh-hHHHHHHHHHHHHHHHHHHHhhcc
Q 022453          228 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPL----V--SV-PPAISTVIMSLMGFFLVMLWAKKS  296 (297)
Q Consensus       228 ~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p~----~--~l-p~~~~~~~q~i~~~~~a~~~~~~~  296 (297)
                      -|..+ +++.    ....+..+..-|. ++.+-+.... ||+    +  +. =++...++-.+...++..+|.||-
T Consensus       245 dr~i~-~~~g----~aG~A~sstAGna-vatPaaiA~~-dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~kr~  313 (314)
T PF03812_consen  245 DRLIL-KGNG----VAGAAISSTAGNA-VATPAAIAAA-DPSFAPYAASATAQVAAAVIVTAILTPILTSWWAKRF  313 (314)
T ss_pred             HHHHc-CCCC----ceeehHHhhhhhh-hhhhHHHHHh-ChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77642 2222    3455555555554 3333322222 222    1  11 122344566777777888888873

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=98.20  E-value=4.2e-06  Score=79.61  Aligned_cols=106  Identities=16%  Similarity=0.143  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH
Q 022453           19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY   98 (297)
Q Consensus        19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~   98 (297)
                      .....+.||.+|.++..++.+... +.+......+.+++++|++++++.    ..++++++....+++.+++|++..+.+
T Consensus       280 ~~~~pl~l~~lG~~l~~~~~~~~~-~~~~~~~~~~~rlii~P~i~~~~~----~~~~l~~~~~~~~~~~~~~P~a~~~~~  354 (385)
T PF03547_consen  280 AAAVPLALFVLGASLARGPRKSAL-GWKPSIIAVLVRLIILPLIGIGIV----FLLGLDGDMARVLILQAAMPTAINSFV  354 (385)
T ss_pred             hhhHHHHHHHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHHHHHHHhccCCchHHHHH
Confidence            346888889999888766543322 233345568889999999999997    888999999999999999999999999


Q ss_pred             HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 022453           99 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLS  130 (297)
Q Consensus        99 ~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~  130 (297)
                      ++...|.|.+ .+......+++++++++|+|+
T Consensus       355 ~a~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~  385 (385)
T PF03547_consen  355 IASLYGLDEE-EASSIVFWSTLLSIPTLPLWI  385 (385)
T ss_pred             HHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHC
Confidence            9999999999 999999999999999999973

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=97.94  E-value=0.0092  Score=55.72  Aligned_cols=255  Identities=16%  Similarity=0.166  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH-
Q 022453           19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-   97 (297)
Q Consensus        19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~-   97 (297)
                      .....++=..+|.+++.+.+.+..+++.......+......-..+|.+.    +..+.|..-+    +.++.|||.+.- 
T Consensus        28 ~~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----r~~~~d~~TA----~~~~~PGg~s~m~   99 (318)
T PF05145_consen   28 NAGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLR----RISGLDRATA----FFASMPGGLSEMV   99 (318)
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCChhHH----HHHcCCccHHHHH
Confidence            4456666678999999999999888887777777777777777788886    6667665433    569999998764 


Q ss_pred             HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC----ccccCh----HHHHHHHhHHHHHHHHHHHHHHHh-cc
Q 022453           98 YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK----RLPVDV----KGMVSSILQIVVVPIAAGLLLNRF-FP  168 (297)
Q Consensus        98 ~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~----~~~i~~----~~i~~~l~~~vllPl~lG~~lr~~-~~  168 (297)
                      .+++-.|+|.. .-.....+=-++-+..+|+...+..+.    +.+.+.    .+ ..++......-...|.+.|+. .|
T Consensus       100 ~la~~~gad~~-~Va~~q~lRl~~Vv~~vP~i~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~~g~~l~~~l~iP  177 (318)
T PF05145_consen  100 ALAEEYGADTR-RVALVQSLRLLLVVLLVPFIASLLGGGNSAASEPGPHAVPLMS-WLWLALLALAALAGGLLARRLRIP  177 (318)
T ss_pred             HHHHHcCCChh-hhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccCCCCC-HHHHHHHHHHHHHHHHHHHHhCCC
Confidence            68999999999 999999998999999999999887653    111110    11 122344445555566666655 34


Q ss_pred             cc--------------hhhhccccch-HHHHHHHHHHHHHhHh--chHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHH
Q 022453          169 RI--------------CNAIRPFLPP-LSVLVTACCVGAPLAI--NIESVMSP--FGLTILLLIITFHLSAFVAGYVVTG  229 (297)
Q Consensus       169 ~~--------------~~~~~~~~~~-~s~~~llliv~~~~~~--~~~~i~~~--~~~~~~~~~~~l~~~~~~~g~~l~~  229 (297)
                      .-              ....+...+. +.....++ +...++.  +.+.+.+.  .....+.....+...+...+|.+++
T Consensus       178 a~~llGpml~~a~~~~~~~~~~~~P~~l~~~aqv~-iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~  256 (318)
T PF05145_consen  178 APWLLGPMLVSAILNLFGGPSFSLPPWLVNAAQVL-IGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSR  256 (318)
T ss_pred             cHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21              1111111211 11121111 2222222  22222221  1122334455666778889999999


Q ss_pred             hhccCcccccchhheeeeeecccchHHHHH--HHHHhCCCCcchhhHHHHHHH----HHHHHHHHHHHHhhcc
Q 022453          230 LAFAEAHDVKALQRTLSYETGMQSSLLALA--LANRFFQDPLVSVPPAISTVI----MSLMGFFLVMLWAKKS  296 (297)
Q Consensus       230 ~~~l~~~~~~~~~~al~~~~g~rN~~la~~--la~~~f~~p~~~lp~~~~~~~----q~i~~~~~a~~~~~~~  296 (297)
                      ..+.|..+     .-+++.=|    ++.-.  +|.. .+ .+..+ ++.+|+.    -.+....++.+++|||
T Consensus       257 ~~~~~~~t-----~~La~aPG----Gl~eM~l~A~~-l~-~d~~~-V~~~q~~Rl~~v~~~~p~~~r~~~r~~  317 (318)
T PF05145_consen  257 LTGIDFLT-----ALLATAPG----GLAEMALIALA-LG-ADVAF-VAAHQVVRLLFVLLLAPFIARWLRRRR  317 (318)
T ss_pred             HHCCCHHH-----HHHHhCCc----cHHHHHHHHHH-cC-CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88666544     22333322    23222  2222 32 23222 3445554    3445566677888876

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=97.93  E-value=0.0043  Score=58.07  Aligned_cols=106  Identities=16%  Similarity=0.188  Sum_probs=86.6

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH-HH
Q 022453           21 ALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YA   99 (297)
Q Consensus        21 ~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~-~~   99 (297)
                      .-.+.=..+|.+++.+++.+..+++-......+......-+.+|.+.|    .-+.|+.-+    ..+++|||.+.- .+
T Consensus        63 ~q~ilG~~ig~~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r----~~~~~~~Ta----~~gs~PGgas~m~~i  134 (352)
T COG3180          63 GQVILGIMIGASLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKR----FSILPGNTA----FLGSSPGGASAMVSI  134 (352)
T ss_pred             HHHHHHHHHhhhcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH----hcCCCcchh----hHhcCCchHHHHHHH
Confidence            344444578999999999999888888888888888888888999973    334554443    459999998874 68


Q ss_pred             HHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcC
Q 022453          100 TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIG  135 (297)
Q Consensus       100 t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~  135 (297)
                      ++-.|.|.. .-..++.+=-+.-..+.|+......+
T Consensus       135 A~d~gAd~~-~VAl~Q~lRvl~Vvl~vplv~~~~~~  169 (352)
T COG3180         135 AQDYGADLR-LVALMQYLRVLFVVLLAPLVSRLFVG  169 (352)
T ss_pred             HHHhCCChh-HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999 99999999999999999999999874

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=97.51  E-value=0.0014  Score=60.00  Aligned_cols=262  Identities=14%  Similarity=0.174  Sum_probs=140.8

Q ss_pred             ecCCccccc---hhh---hHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCch
Q 022453            5 VFPPSFTWF---TAR---YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT   78 (297)
Q Consensus         5 ~~P~~~~~~---~~~---~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~   78 (297)
                      ++|+.+..+   .+.   -..+.+++.+|++|.+++.|+-.+.+||-..+   +..++++--++++.++    ++++.+.
T Consensus        28 f~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l---~~~K~~i~~~~g~~~~----~~~g~~G  100 (314)
T TIGR00793        28 FAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTL---VVTKIAVAWVVAAIAS----RIIPEDG  100 (314)
T ss_pred             cCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhccee---eeHHHHHHHHHHHHHH----HHcCcCC
Confidence            678775442   111   13568999999999999999998888875422   2356777777788887    7787654


Q ss_pred             ---hHHHHH---HHHhccCchhhHH--HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC--ccccChHHHHHH
Q 022453           79 ---PIGAGI---MLVSCVSGAQLSN--YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RLPVDVKGMVSS  148 (297)
Q Consensus        79 ---~~~~gl---~l~~~~P~~~~s~--~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~--~~~i~~~~i~~~  148 (297)
                         ..-.|+   .+++++--.+-+-  ..+...|-+.+--+.      .+.++--=|+...+.+|.  ..++|+..+   
T Consensus       101 i~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D~gA~------~i~sl~~GPf~TMi~LG~sGlA~ip~~~l---  171 (314)
T TIGR00793       101 VEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAF------VLMSLESGPLMTMVILGTAGIASFEPHVF---  171 (314)
T ss_pred             ccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhhhhhh------hhhhhccCcHHHHHHHhhccCCCCCHHHH---
Confidence               122222   2333333222221  123343333330222      233444456655555554  356777654   


Q ss_pred             HhHHHHHHHHHHHHHHHhcccchhhhccccchHHHHHHHHHH-HHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 022453          149 ILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCV-GAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVV  227 (297)
Q Consensus       149 l~~~vllPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llliv-~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l  227 (297)
                        +-.++|+++|+.+-..-|++.|.+.|-.+.+    +-+.- ..-...|.+.+.+. |..-++..+..........|+.
T Consensus       172 --v~~ilPlliG~ilGNLD~~~r~fl~~~~~~l----IpFf~FaLGaginl~~i~~a-Gl~GIlLGl~v~~vtG~~~~~~  244 (314)
T TIGR00793       172 --VGAVLPFLVGFALGNLDPELRDFFSKAVQTL----IPFFAFALGNTIDLGVIIQT-GLLGILLGVSVIILTGIPLILA  244 (314)
T ss_pred             --HHHHHHHHHHHHHhcCCHHHHHHhccCCCee----eehhhhhhcCCCCHHHHHHh-CcchHHHHHHHHHHHhHHHHHH
Confidence              6788999999999988887777666644421    11110 11123455566553 3322222333344555566777


Q ss_pred             HHhhccCcccccchhheeeeeecccchHHHHHHHHHhCCCCc----c--hhh-HHHHHHHHHHHHHHHHHHHhhcc
Q 022453          228 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPL----V--SVP-PAISTVIMSLMGFFLVMLWAKKS  296 (297)
Q Consensus       228 ~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p~----~--~lp-~~~~~~~q~i~~~~~a~~~~~~~  296 (297)
                      -|..+ +++.    ....+..+..-|. .+.+-+...- ||.    +  +.. ++-..++-.+...++..||.||.
T Consensus       245 dr~~~-g~~g----~aG~A~sstAGnA-vatPaavA~a-dPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~kr~  313 (314)
T TIGR00793       245 DKFIG-GGDG----TAGIAASSSAGAA-VATPVLIAEM-VPAFKPVAPAATALVATSVIVTSLLVPIATVWWSKKV  313 (314)
T ss_pred             HHHhc-CCCC----chhhHHHHHHHHh-hhhHHHHHHh-ChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77663 2222    2344444444454 2222222222 222    1  111 22244566777788888888875

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=97.43  E-value=0.0089  Score=55.89  Aligned_cols=209  Identities=17%  Similarity=0.253  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCch---hHHHHHHHHhc-----
Q 022453           18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIMLVSC-----   89 (297)
Q Consensus        18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~---~~~~gl~l~~~-----   89 (297)
                      ..+++++-+|++|.+++.++....+||-..+.   ..++.+--++++...    .+++.+.   ....|...++.     
T Consensus        49 ~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l~---~~k~~~~~~~~~~~~----~~~g~~~i~~gl~~G~s~la~~a~l~  121 (326)
T PRK05274         49 AVPILAVFLFCMGASINLRATGTVLKKGGTLL---LTKFAVAALVGVIAG----KFIGEEGIRLGGFAGLSTLAIIAAMD  121 (326)
T ss_pred             hHHHHHHHHHHcCCEEeccccchhhhhchhHH---HHHHHHHHHHHHHhh----hcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            35688999999999999999988887754332   235555556666666    5555422   22222222211     


Q ss_pred             -cCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCC--ccccChHHHHHHHhHHHHHHHHHHHHHHHh
Q 022453           90 -VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRF  166 (297)
Q Consensus        90 -~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~--~~~i~~~~i~~~l~~~vllPl~lG~~lr~~  166 (297)
                       +=++......+...+.... -+.....+      -.-|.....+.+.  ..++|..++.     -.++|+++|+.++.+
T Consensus       122 ~~N~~ly~~~~~~~g~~~d~-ga~i~lsl------~~Gp~~tM~lL~aagla~~p~~~li-----~allplliG~~lgnl  189 (326)
T PRK05274        122 NTNGGLYAALMGQYGTKEDA-GAFVLMSL------EDGPFMTMLALGAAGLASFPPPALV-----GAVLPLLVGFILGNL  189 (326)
T ss_pred             CCCHHHHHHHHHHhCCCCCc-chHHHHHH------hhhHHHHHHHHHhhCcccCCCchhh-----HHHHHHHHHHHHHhH
Confidence             2223333334443332112 22222222      2234433333332  2345555543     223999999999998


Q ss_pred             cccchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheee
Q 022453          167 FPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLS  246 (297)
Q Consensus       167 ~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~  246 (297)
                      .+++.+...+-...+   .-..+...-...|.+.+.+ .++.-.+.....+......+|+..|+++.+++     ....+
T Consensus       190 ~~~l~~~~~~Gi~~l---Lp~~~~~lG~~l~lq~i~~-~G~~GilL~~~~~~~t~~~~~~~~Rl~~~~~g-----~~g~a  260 (326)
T PRK05274        190 DPELRQFLGKAVPVL---IPFFAFALGNGIDLGTIIT-AGLSGILLGVAVVAVTGIPLYLADRLIGGGNG-----VAGAA  260 (326)
T ss_pred             HHhhHHHhcCCcEEE---HHHHHHHHhcceeHhHHHh-cCCcchhhhhhHhhccchhhHhHhheeecCCC-----cchHH
Confidence            887777777665541   1111111223334455544 24444444555566677778999998853332     33455


Q ss_pred             eeecccch
Q 022453          247 YETGMQSS  254 (297)
Q Consensus       247 ~~~g~rN~  254 (297)
                      ..++..|.
T Consensus       261 ~~ttaG~a  268 (326)
T PRK05274        261 AGSTAGNA  268 (326)
T ss_pred             HHHHHHHH
Confidence            55566666

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=96.60  E-value=0.52  Score=42.63  Aligned_cols=146  Identities=17%  Similarity=0.251  Sum_probs=73.7

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHH--HHHHHhhhhhccCCc--hhHHHHHHHHhccC
Q 022453           16 RYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL--GYIFGTISVSVFGLP--TPIGAGIMLVSCVS   91 (297)
Q Consensus        16 ~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Pll--a~~l~~~~~~~~~l~--~~~~~gl~l~~~~P   91 (297)
                      ......+.++||..|+++|.+++++..|+...  .+.. . .+.|..  ++...    ..++.+  .....|..+...+|
T Consensus        45 ~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~--~~~~-~-~~~~~~~~~~~~~----~~~~~~~~~~~~lg~~ls~Ts~  116 (273)
T TIGR00932        45 HLAEFGVILLMFLIGLELDLERLWKLRKAAFG--VGVL-Q-VLVPGVLLGLLLG----HLLGLALGAAVVIGIILALSST  116 (273)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HHHH-H-HHHHHHHHHHHHH----HHHCCCHHHHHHHHHHHHHhHH
Confidence            33456788999999999999999987664332  2222 2 223422  23233    445543  33334444443332


Q ss_pred             chhhHHHHHHH--cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHHHHHHhccc
Q 022453           92 GAQLSNYATFL--TDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR  169 (297)
Q Consensus        92 ~~~~s~~~t~~--~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~~lr~~~~~  169 (297)
                      +... .+...+  .+.+...+.+....++.+++.+..-+......+.+  .+..+...........-...+...|+..+.
T Consensus       117 ~v~~-~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (273)
T TIGR00932       117 AVVV-QVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATSAS--TEHVALALLLLKVFLAFLLLVLLGRWLLRP  193 (273)
T ss_pred             HHHH-HHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222 223322  23333325566677888888888777665543322  122222222223333444455555555444


Q ss_pred             chh
Q 022453          170 ICN  172 (297)
Q Consensus       170 ~~~  172 (297)
                      ..+
T Consensus       194 ~~~  196 (273)
T TIGR00932       194 VLR  196 (273)
T ss_pred             HHH
Confidence            333

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=96.49  E-value=0.092  Score=43.80  Aligned_cols=106  Identities=16%  Similarity=0.177  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH
Q 022453           18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN   97 (297)
Q Consensus        18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~   97 (297)
                      ......++-...|++.+.+++++..|.....+...+......=..++.+.    +..+.|..-+    +.+++|||...-
T Consensus        49 ~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~----~~~~~~~~ta----~La~~PGGl~~m  120 (156)
T TIGR03082        49 LALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLA----RLTGVDPLTA----FLATSPGGASEM  120 (156)
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHH----HHHhCCchHHHH
Confidence            34566666778999999999999888777666555555555555666665    6677765444    579999998774


Q ss_pred             -HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 022453           98 -YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL  132 (297)
Q Consensus        98 -~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~l  132 (297)
                       ..+...|.|.. .-.....+=.+.-.+..|+...+
T Consensus       121 ~~~A~~~gad~~-~V~~~q~~Rl~~v~~~~P~i~~~  155 (156)
T TIGR03082       121 AALAAELGADVA-FVAAMQTLRLLFVVLLVPLLARL  155 (156)
T ss_pred             HHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence             57888899999 88888887777777888876653

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=96.40  E-value=0.094  Score=49.74  Aligned_cols=109  Identities=14%  Similarity=0.245  Sum_probs=67.7

Q ss_pred             hHHHHHHHHHHHHHHHhc--c-cchhhhccccchHHHHHHHHHHHHHhHhc--hHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 022453          150 LQIVVVPIAAGLLLNRFF--P-RICNAIRPFLPPLSVLVTACCVGAPLAIN--IESVMSPFGLTILLLIITFHLSAFVAG  224 (297)
Q Consensus       150 ~~~vllPl~lG~~lr~~~--~-~~~~~~~~~~~~~s~~~llliv~~~~~~~--~~~i~~~~~~~~~~~~~~l~~~~~~~g  224 (297)
                      ..-+++-+.+|.+++|+.  + +..+.+.+..   -.+.+=..++..++.+  .+.+.+  .+.......+...+++.++
T Consensus         6 i~~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv---~~~~lP~liF~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   80 (385)
T PF03547_consen    6 ILPIFLIILLGYLLGRFGILDPEASKGLSKLV---FNVFLPALIFSSIANTDTLEDLLS--LWFIPVFAFIIFILGLLLG   80 (385)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHhccchhhhhh--hHHHHHHHHHHHHHHHHHH
Confidence            355666778999998761  1 1222233322   2233333333334432  222222  2333444566677888899


Q ss_pred             HHHHHhhccCcccccchhheeeeeecccch-HHHHHHHHHhCCC
Q 022453          225 YVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQD  267 (297)
Q Consensus       225 ~~l~~~~~l~~~~~~~~~~al~~~~g~rN~-~la~~la~~~f~~  267 (297)
                      +...|.++.++++    +......++..|. .+++++....|++
T Consensus        81 ~~~~~~~~~~~~~----~~~~~~~~~~~N~~~lglpi~~~l~g~  120 (385)
T PF03547_consen   81 FLLSRLFRLPKEW----RGVFVLAASFGNTGFLGLPILQALFGE  120 (385)
T ss_pred             HHHHHhcCCCccc----ceEEEecccCCcchhhHHHHHHHHhcc
Confidence            9999988777776    7888888899999 4799999999975

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=96.27  E-value=0.069  Score=49.65  Aligned_cols=113  Identities=12%  Similarity=0.201  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHH-HHhc--c-cchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 022453          150 LQIVVVPIAAGLLL-NRFF--P-RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGY  225 (297)
Q Consensus       150 ~~~vllPl~lG~~l-r~~~--~-~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~  225 (297)
                      ..-+++-+.+|.++ ||..  + +..+.+++..-.+..-   ..++..+........+...+.............+.++|
T Consensus        10 ilpv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP---~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   86 (321)
T TIGR00946        10 VLPILVVILLGYILGKRFGILDEEHASGINRFVINFALP---LTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYALIW   86 (321)
T ss_pred             HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788899999 7753  2 2233344433322222   22222333221110111112222233344456678888


Q ss_pred             HHHH-hhccCcccccchhheeeeeecccchH-HHHHHHHHhCCCCc
Q 022453          226 VVTG-LAFAEAHDVKALQRTLSYETGMQSSL-LALALANRFFQDPL  269 (297)
Q Consensus       226 ~l~~-~~~l~~~~~~~~~~al~~~~g~rN~~-la~~la~~~f~~p~  269 (297)
                      ..+| .++.|+++    +.+..+.++..|++ ++++++...|++..
T Consensus        87 ~~~~~~~~~~~~~----~~~~~~~~~~~N~~~~GlPl~~~~~G~~~  128 (321)
T TIGR00946        87 LITKPLFKADYGK----LSGFLLVSALPNTAFIGYPLLLSLFGEEG  128 (321)
T ss_pred             HHHHHHHhcccch----hhHHHHHhhhccceeehHHHHHHHhcccc
Confidence            8888 66666666    78888888999975 79999999997443

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=96.24  E-value=1.2  Score=42.86  Aligned_cols=136  Identities=17%  Similarity=0.174  Sum_probs=68.9

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHH-HHhhhhh-ccCCc--hhHHHHHHHHhccCc
Q 022453           17 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI-FGTISVS-VFGLP--TPIGAGIMLVSCVSG   92 (297)
Q Consensus        17 ~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~-l~~~~~~-~~~l~--~~~~~gl~l~~~~P~   92 (297)
                      .-...+.++||..|+..|.+++++..|+.   ..+....-+..|..... ..    . .++.+  +....|..+. ....
T Consensus        61 laelGvi~LlF~~GLE~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~~----~~~~g~~~~~al~lg~~l~-~sS~  132 (397)
T COG0475          61 LAELGVVFLLFLIGLEFDLERLKKVGRSV---GLGVAQVGLTAPFLLGLLLL----LGILGLSLIAALFLGAALA-LSST  132 (397)
T ss_pred             HHHHhHHHHHHHHHHCcCHHHHHHhchhh---hhhHHHHHHHHHHHHHHHHH----HHHhccChHHHHHHHHHHH-HHHH
Confidence            44567889999999999999999876653   22222223444533332 22    2 24444  3444444432 2233


Q ss_pred             hhhHHHHHHHcC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccC-hHHHHHHHhHHHHHHHHHH
Q 022453           93 AQLSNYATFLTD--PPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD-VKGMVSSILQIVVVPIAAG  160 (297)
Q Consensus        93 ~~~s~~~t~~~~--Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~-~~~i~~~l~~~vllPl~lG  160 (297)
                      +..+.++.++-+  .+.............+.+.....+...+..+.+.+.+ ...+...+.....+=...|
T Consensus       133 ~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g  203 (397)
T COG0475         133 AIVLKILMELGLLKTREGQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLG  203 (397)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence            344445555332  2222244555556666666666665554433333333 2344434334444334444

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=95.71  E-value=3.4  Score=43.67  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=23.3

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHhcC
Q 022453           16 RYYAPALGFLMFAVGVNSSEKDFIEAFKR   44 (297)
Q Consensus        16 ~~~~~~l~~~mf~~gl~l~~~~~~~~~~~   44 (297)
                      ......+.+.||..|+.++.+++++..|+
T Consensus       106 ~la~lGlillmFliGLE~Dl~~lr~~~k~  134 (832)
T PLN03159        106 TMANLGLLYFLFLVGVEMDISVIRRTGKK  134 (832)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHhcchH
Confidence            34456788899999999999999876544

>PRK05326 potassium/proton antiporter; Reviewed

Probab=95.46  E-value=3.3  Score=41.70  Aligned_cols=30  Identities=20%  Similarity=0.215  Sum_probs=24.7

Q ss_pred             hhHHHHHHHHHHHhcCCCCHHHHHHHhcCh
Q 022453           16 RYYAPALGFLMFAVGVNSSEKDFIEAFKRP   45 (297)
Q Consensus        16 ~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p   45 (297)
                      ......+.+++|..|++++.+++++..+..
T Consensus        61 ~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~   90 (562)
T PRK05326         61 LVGNLALAVILFDGGLRTRWSSFRPALGPA   90 (562)
T ss_pred             HHHHHHHHHHHHcCccCCCHHHHHHHHHHH
Confidence            345678999999999999999999876543

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=95.29  E-value=0.2  Score=46.46  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHhcccchhhhccccchHHHHHH-HHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 022453          151 QIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT-ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT-  228 (297)
Q Consensus       151 ~~vllPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~l-lliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~-  228 (297)
                      -...+.+++|+.++.+..+..++.++-.+..++..+ .-++..-+..+.+++.+ .|+...+...+.....+..+|+++ 
T Consensus        27 ~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~-~G~~~~~~~~~~v~~~~~~~~~lg~  105 (305)
T PF03601_consen   27 GALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILA-LGWKGLLIIIIVVILTFLLTYWLGR  105 (305)
T ss_pred             cHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHH
Confidence            355678889999997444444455544433332111 22222333445566666 466555666677778889999999 


Q ss_pred             HhhccCcccccchhheeeeeecccchHHHHHHHHH
Q 022453          229 GLAFAEAHDVKALQRTLSYETGMQSSLLALALANR  263 (297)
Q Consensus       229 ~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~  263 (297)
                      |.+|+|++.    ..-++-.++..-.+-..+++..
T Consensus       106 r~~~l~~~~----~~Lia~GtsICG~SAi~A~a~~  136 (305)
T PF03601_consen  106 RLFGLDRKL----AILIAAGTSICGASAIAATAPV  136 (305)
T ss_pred             HHhCCCHHH----HHHHHhhcccchHHHHHHHccc
Confidence            999888765    5555555555555544455443

; GO: 0016021 integral to membrane

>PRK09903 putative transporter YfdV; Provisional

Probab=95.29  E-value=0.55  Score=43.53  Aligned_cols=112  Identities=12%  Similarity=0.138  Sum_probs=59.9

Q ss_pred             HHhHHHHHHHHHHHHHHHhc--c-cchhhhccccchHHHHHHHHHHHHHhHh-chHHhhhhhHHHHHHHHHHHHHHHHHH
Q 022453          148 SILQIVVVPIAAGLLLNRFF--P-RICNAIRPFLPPLSVLVTACCVGAPLAI-NIESVMSPFGLTILLLIITFHLSAFVA  223 (297)
Q Consensus       148 ~l~~~vllPl~lG~~lr~~~--~-~~~~~~~~~~~~~s~~~llliv~~~~~~-~~~~i~~~~~~~~~~~~~~l~~~~~~~  223 (297)
                      +...-+.+=+.+|.++||..  + +..+.+++..-.+..-++   +...+.. +.+...+  .+.......+.....+..
T Consensus         7 ~~ilpif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPal---if~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~   81 (314)
T PRK09903          7 GDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAA---LFVSITRANREMIFA--DTRLTLVSLVVIVGCFFF   81 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH---HHHHHHhCCHHHHHh--hhhHHHHHHHHHHHHHHH
Confidence            33455666677888888753  2 223334443332222222   2222222 2222222  122333444445566667


Q ss_pred             HHHHHHh-hccCcccccchhheeeeeecccch-HHHHHHHHHhCCCC
Q 022453          224 GYVVTGL-AFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQDP  268 (297)
Q Consensus       224 g~~l~~~-~~l~~~~~~~~~~al~~~~g~rN~-~la~~la~~~f~~p  268 (297)
                      +|..+|. .+.+++|    +....+.++..|+ -++.++....|++.
T Consensus        82 ~~~~~~~~~~~~~~~----~~~~~~~~~~~N~gf~G~Pl~~~~~G~~  124 (314)
T PRK09903         82 SWFGCYKFFKRTHAE----AAVCALIAGSPTIGFLGFAVLDPIYGDS  124 (314)
T ss_pred             HHHHHHHHhcCCcch----hhHhhhhhcCCCcccccHHHHHHHcCch
Confidence            7777753 3444444    5566777777887 58999999999754

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=95.17  E-value=0.39  Score=40.69  Aligned_cols=104  Identities=22%  Similarity=0.193  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHhccc----chhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 022453          155 VPIAAGLLLNRFFPR----ICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTG-  229 (297)
Q Consensus       155 lPl~lG~~lr~~~~~----~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~-  229 (297)
                      -|+..|+.+-++.++    ........++.+....++..+....+++.-+-.++.+++.....++.+..+..+++..+| 
T Consensus        28 G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~  107 (169)
T PF06826_consen   28 GVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRY  107 (169)
T ss_pred             HHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555332    222233333344444444444444444432222334777778888899999999999998 


Q ss_pred             hhccCcccccchhheeeeeecccchHHHHHHHHHh
Q 022453          230 LAFAEAHDVKALQRTLSYETGMQSSLLALALANRF  264 (297)
Q Consensus       230 ~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~  264 (297)
                      .+|+|..+      +...-+|.++.+-++.-|...
T Consensus       108 ~~~l~~~~------~~G~~aGa~T~tp~L~~A~~~  136 (169)
T PF06826_consen  108 LFKLNPGI------AAGILAGALTSTPALAAAQEA  136 (169)
T ss_pred             HcCCCHHH------HHHHHHccccCcHHHHHHHHh
Confidence            78766644      667777888887777777666

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=94.82  E-value=0.72  Score=43.08  Aligned_cols=107  Identities=8%  Similarity=0.136  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH-
Q 022453           19 APALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-   97 (297)
Q Consensus        19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~-   97 (297)
                      ...-.++=...|++.+.+++++..|.-..............=..++.+.    ++.+.|..    -.+++++|||...- 
T Consensus       207 ~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~----~~~~~~~~----t~~La~aPGGl~eM~  278 (318)
T PF05145_consen  207 NAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLS----RLTGIDFL----TALLATAPGGLAEMA  278 (318)
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHH----HHHHHhCCccHHHHH
Confidence            3344455568899999999998776655555555555555666677776    66676643    34679999998874 


Q ss_pred             HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHc
Q 022453           98 YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI  134 (297)
Q Consensus        98 ~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~  134 (297)
                      ..+.-.|.|.+ .-.....+=.+.-.++.|++..++.
T Consensus       279 l~A~~l~~d~~-~V~~~q~~Rl~~v~~~~p~~~r~~~  314 (318)
T PF05145_consen  279 LIALALGADVA-FVAAHQVVRLLFVLLLAPFIARWLR  314 (318)
T ss_pred             HHHHHcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888999999 8888888888888888888877764

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.69  E-value=5.8  Score=40.52  Aligned_cols=78  Identities=15%  Similarity=0.112  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCc--hhHHHHHHHHhccCchhh
Q 022453           18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP--TPIGAGIMLVSCVSGAQL   95 (297)
Q Consensus        18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~--~~~~~gl~l~~~~P~~~~   95 (297)
                      ....+.++||..|+.++++++++..|+  ....+. .|.++.-.+.++++    ..++.+  ....+|..+..+++ +..
T Consensus        60 aelGvv~LlF~iGLEl~~~~l~~~~~~--~~~~g~-~qv~~~~~~~~~~~----~~~g~~~~~al~ig~~la~SSt-aiv  131 (621)
T PRK03562         60 AEFGVVLMLFVIGLELDPQRLWKLRRS--IFGGGA-LQMVACGGLLGLFC----MLLGLRWQVALLIGLGLALSST-AIA  131 (621)
T ss_pred             HHHHHHHHHHHHHhCcCHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHH----HHhCCCHHHHHHHHHHHHHHHH-HHH
Confidence            346788999999999999999876443  222222 34444333444444    555554  34445555444433 333


Q ss_pred             HHHHHHHc
Q 022453           96 SNYATFLT  103 (297)
Q Consensus        96 s~~~t~~~  103 (297)
                      ..++...-
T Consensus       132 ~~~L~e~~  139 (621)
T PRK03562        132 MQAMNERN  139 (621)
T ss_pred             HHHHHHhc
Confidence            44555443

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=93.91  E-value=0.64  Score=40.96  Aligned_cols=90  Identities=14%  Similarity=0.078  Sum_probs=64.4

Q ss_pred             HHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHHHHHHcCCCCcchHHHHHH
Q 022453           37 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTS  116 (297)
Q Consensus        37 ~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~  116 (297)
                      +.++..||.+.+..+..+.-++--...+.++    +.+++|++....+.  .=+=+++.+.-.++..|||.+ ++...+.
T Consensus        69 ~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~----~~lgl~~~~~~Sl~--pkSVTtpiAi~is~~iGG~~s-Lta~~Vv  141 (215)
T PF04172_consen   69 QRRLLKKNWIPILVGVLVGSLVSIFSAVLLA----RLLGLSPEIILSLA--PKSVTTPIAIEISEQIGGIPS-LTAVFVV  141 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHH--HHHhhHHHHHHHHHHhCChHH-HHHHHHH
Confidence            4445556666777777776666666677777    78888888776554  111133333457889999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 022453          117 LSTATAVFVTPLLSLLL  133 (297)
Q Consensus       117 ~st~l~~~~~Pl~~~ll  133 (297)
                      ++-+++...-|.++.++
T Consensus       142 itGi~Ga~~g~~llk~~  158 (215)
T PF04172_consen  142 ITGILGAVLGPPLLKLL  158 (215)
T ss_pred             HHhhHHHHhHHHHHhHc
Confidence            99999999988888775

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.75  E-value=8.9  Score=39.01  Aligned_cols=82  Identities=15%  Similarity=0.063  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCch--hHHHHHHHHhccCchhh
Q 022453           18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT--PIGAGIMLVSCVSGAQL   95 (297)
Q Consensus        18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~--~~~~gl~l~~~~P~~~~   95 (297)
                      ....+.++||..|+.++++++++..|+  ....+. .|.++.-.+..+..    ..++.+.  ...+|..+ +.++++..
T Consensus        60 aelGvv~LLF~iGLel~~~~l~~~~~~--~~~~g~-~~v~~t~~~~~~~~----~~~g~~~~~a~~~g~~l-a~SSTaiv  131 (601)
T PRK03659         60 SELGVVFLMFIIGLELNPSKLWQLRRS--IFGVGA-AQVLLSAAVLAGLL----MLTDFSWQAAVVGGIGL-AMSSTAMA  131 (601)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHH----HHHccCHHHHHHHHHHH-HHHHHHHH
Confidence            346788999999999999999876442  222222 33333222333333    3445443  34444332 22333444


Q ss_pred             HHHHHHHcCCCC
Q 022453           96 SNYATFLTDPPL  107 (297)
Q Consensus        96 s~~~t~~~~Gd~  107 (297)
                      ..+....-.-|.
T Consensus       132 ~~iL~e~~~~~t  143 (601)
T PRK03659        132 LQLMREKGMNRS  143 (601)
T ss_pred             HHHHHHcccccC
Confidence            455555543334

>PRK10711 hypothetical protein; Provisional

Probab=93.10  E-value=1.1  Score=39.86  Aligned_cols=86  Identities=15%  Similarity=0.000  Sum_probs=64.7

Q ss_pred             HHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH---HHHHHcCCCCcchHHHH
Q 022453           38 FIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN---YATFLTDPPLAPLSIVM  114 (297)
Q Consensus        38 ~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~---~~t~~~~Gd~~~ls~~l  114 (297)
                      .+...||++.+..+...--++--..++.++    +.++.|++....+     .|=.++.+   -.++..||+.+ ++...
T Consensus        81 ~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~----~~lg~~~~~~~Sl-----~pkSVTtPIAm~is~~iGG~~s-Lta~~  150 (231)
T PRK10711         81 LHQIRARWKSIISICFIGSVVAMVTGTAVA----LWMGATPEIAASI-----LPKSVTTPIAMAVGGSIGGIPA-ISAVC  150 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHH-----hhhhhhHHHHHHHHHHhCCcHH-HHHHH
Confidence            344445566677777766666667777887    8889988877654     46554443   47899999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 022453          115 TSLSTATAVFVTPLLSLLL  133 (297)
Q Consensus       115 t~~st~l~~~~~Pl~~~ll  133 (297)
                      +.++-+++.+.-|.++.++
T Consensus       151 ViitGi~Ga~~g~~llk~~  169 (231)
T PRK10711        151 VIFVGILGAVFGHTLLNAM  169 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999988875

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=93.03  E-value=1.1  Score=39.77  Aligned_cols=88  Identities=16%  Similarity=0.129  Sum_probs=61.8

Q ss_pred             HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhH---HHHHHHcCCCCcchHH
Q 022453           36 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS---NYATFLTDPPLAPLSI  112 (297)
Q Consensus        36 ~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s---~~~t~~~~Gd~~~ls~  112 (297)
                      ++.+...||.+.+..+...--+.--..++.++    +.++.|++....+     .|=..+.   --.++..|||.+ ++.
T Consensus        78 ~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la----~~lg~~~~i~~Sl-----~pkSvTtpiAm~vs~~iGG~~s-Lta  147 (226)
T TIGR00659        78 KQLPQIKKYWKEIILNVAVGSVIAIISGTLLA----LLLGLGPEIIASL-----LPKSVTTPIAMHVSEMIGGIPA-VTA  147 (226)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHh-----hhHHhhHHHHHHHHHHhCChHH-HHH
Confidence            34444445555666666655555556667776    7888888776543     4544444   347888899999 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 022453          113 VMTSLSTATAVFVTPLLSLLL  133 (297)
Q Consensus       113 ~lt~~st~l~~~~~Pl~~~ll  133 (297)
                      ..+.++-+++...-|.++.++
T Consensus       148 ~~vvitGi~Ga~~g~~ll~~~  168 (226)
T TIGR00659       148 VFVILTGLLGTVFGPMVLRYF  168 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            999999999988888887765

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=92.92  E-value=8.7  Score=36.48  Aligned_cols=101  Identities=19%  Similarity=0.222  Sum_probs=65.4

Q ss_pred             HHHHHhcCCCCHHHHHHHhcChhHHHH-HHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHHHHHH
Q 022453           24 FLMFAVGVNSSEKDFIEAFKRPAAIFA-GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFL  102 (297)
Q Consensus        24 ~~mf~~gl~l~~~~~~~~~~~p~~~~~-~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t~~  102 (297)
                      +++++.|.-.|   +...+.|||..+. +...|+.+.-  ++..+    ..++.++..+..+-+.+.+=|.++-.+-+++
T Consensus       110 LIFlGIGAMtD---FgpllanP~~~ll~gaaAQ~GiF~--t~~~A----~~lGF~~~eAAsIgIIGgADGPTaIf~s~kL  180 (399)
T TIGR03136       110 ILFFGIGAMSD---ISFILARPWASITVALFAEMGTFA--TLVIG----YYCGLTPGEAAAVGTIGGADGPMVLFASLIL  180 (399)
T ss_pred             HHHHhccHHhc---chHHHhChHHHHHHHHHHHhhHHH--HHHHH----HHcCCCHHHhhHHhhcccCCccHHHHHHHhh
Confidence            34467777555   4556789999988 8999998753  33444    4567888888888888887766555555555


Q ss_pred             cCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453          103 TDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  135 (297)
Q Consensus       103 ~~Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~  135 (297)
                      +.. .- -+++..+-| .-+.++.-|-.+.++..
T Consensus       181 Ap~-Ll-g~IaVAAYsYMaLVPiiqPpimklLtt  212 (399)
T TIGR03136       181 AKD-LF-VPISIIAYLYLSLTYAGYPYLIKLLVP  212 (399)
T ss_pred             hhH-hH-HHHHHHHHHHHHHHhcccchHHHhhcC
Confidence            532 22 233333333 34567777888888764

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=92.89  E-value=1.2  Score=39.72  Aligned_cols=86  Identities=12%  Similarity=0.013  Sum_probs=62.1

Q ss_pred             HHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH---HHHHHcCCCCcchHHHH
Q 022453           38 FIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN---YATFLTDPPLAPLSIVM  114 (297)
Q Consensus        38 ~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~---~~t~~~~Gd~~~ls~~l  114 (297)
                      .+...|+++.+..+..+--.+--..++.++    +.+++|++....+     .|=.++.+   -.++..||+.+ ++...
T Consensus        86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la----~~lgl~~~~~~Sl-----~pKSVTtPIAm~is~~iGG~ps-LtA~~  155 (232)
T PRK04288         86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVA----KLIQLDNAVMASM-----LPQAATTAIALPVSAGIGGIKE-ITSFA  155 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHH-----hhHhhhHHHHHHHHHHhCCcHH-HHHHH
Confidence            334445566677777666666666677777    7888888766544     46544443   47888899999 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 022453          115 TSLSTATAVFVTPLLSLLL  133 (297)
Q Consensus       115 t~~st~l~~~~~Pl~~~ll  133 (297)
                      +.++-+++.+.-|.++.++
T Consensus       156 ViitGi~Gai~g~~llk~~  174 (232)
T PRK04288        156 VIFNAVIIYALGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999888888887765

>COG0679 Predicted permeases [General function prediction only]

Probab=92.30  E-value=3  Score=38.72  Aligned_cols=118  Identities=14%  Similarity=0.150  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHHHHHHhcccchh---hhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 022453          150 LQIVVVPIAAGLLLNRFFPRICN---AIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYV  226 (297)
Q Consensus       150 ~~~vllPl~lG~~lr~~~~~~~~---~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~  226 (297)
                      ..-+.+=+.+|.+++|+..-..|   .+.+..-.+..-   ..++..+..+...-.++  +......+......+..+++
T Consensus         9 vlpi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP---~LlF~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   83 (311)
T COG0679           9 VLPIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALP---ALLFNSIATADLSGLAD--LGLIVASLVATLLAFFLLAL   83 (311)
T ss_pred             HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhH---HHHHHHHHhCCcchhhh--HHHHHHHHHHHHHHHHHHHH
Confidence            34555556788888877432222   233322222221   22223333333221121  23334444445555666666


Q ss_pred             HHHhhc-cCcccccchhheeeeeecccchH-HHHHHHHHhCCCCcchhhHHH
Q 022453          227 VTGLAF-AEAHDVKALQRTLSYETGMQSSL-LALALANRFFQDPLVSVPPAI  276 (297)
Q Consensus       227 l~~~~~-l~~~~~~~~~~al~~~~g~rN~~-la~~la~~~f~~p~~~lp~~~  276 (297)
                      .+|..+ .++++    +.......+..|++ ++.+++...|++...+....+
T Consensus        84 ~~~~~~~~~~~~----~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~  131 (311)
T COG0679          84 IGRFLFKLDKRE----TVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIF  131 (311)
T ss_pred             HHHHHhccchhh----HHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHH
Confidence            666543 33333    55677778888885 679999999986665554433

>TIGR00698 conserved hypothetical integral membrane protein

Probab=91.96  E-value=2.2  Score=40.15  Aligned_cols=105  Identities=8%  Similarity=0.002  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHhc-ccchhhhccccchHHHHHH-HHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 022453          154 VVPIAAGLLLNRFF-PRICNAIRPFLPPLSVLVT-ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT-GL  230 (297)
Q Consensus       154 llPl~lG~~lr~~~-~~~~~~~~~~~~~~s~~~l-lliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~-~~  230 (297)
                      ++-+++|+.++... ++..++.++-.+..++..+ .-++..-+..+.+++.+ .|+..+..........+..+++++ |+
T Consensus        35 ~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~-~G~~~l~~~~~~v~~~~~~~~~~g~k~  113 (335)
T TIGR00698        35 FLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIAD-VGPNEIVADTLILTSTFFLTVFLGSSR  113 (335)
T ss_pred             HHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667899998743 3444444443332222221 12222233445566655 466665555666677888889998 78


Q ss_pred             hccCcccccchhheeeeeecccchHHHHHHHHH
Q 022453          231 AFAEAHDVKALQRTLSYETGMQSSLLALALANR  263 (297)
Q Consensus       231 ~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~  263 (297)
                      +|+|++.    +.-++-.++..=.+-..+.+..
T Consensus       114 l~l~~~~----~~Lia~GtsICGaSAi~A~a~~  142 (335)
T TIGR00698       114 LKLDKQM----SILLGAGSSICGAAAVAAIEPV  142 (335)
T ss_pred             hCCChhH----HHHHHcchhHHHHHHHHHhccc
Confidence            9888766    5555555555554444444433

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=91.57  E-value=2.3  Score=36.79  Aligned_cols=133  Identities=19%  Similarity=0.313  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHhcccchhhhccccchHHHHHHHHHHHHHhHhchHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 022453          154 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMS--PFGLTILLLIITFHLSAFVAGYVVTGLA  231 (297)
Q Consensus       154 llPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~--~~~~~~~~~~~~l~~~~~~~g~~l~~~~  231 (297)
                      +..+.+|+.+.++.+...+...+ ........+++.+..-++.|.+.+.+  ..+++.+...+.-...+...|+..++.+
T Consensus         2 l~~li~Gi~lG~~~~~~~~~~~~-~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll   80 (191)
T PF03956_consen    2 LIALILGILLGYFLRPPFSLIDK-ISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLL   80 (191)
T ss_pred             eeeHHHHHHHHHHhccccccccc-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567888888775543222222 22233344444455556666543322  1356666655555667778888888888


Q ss_pred             ccCcccccchhheeeeeecccchHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 022453          232 FAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAK  294 (297)
Q Consensus       232 ~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p~~~lp~~~~~~~q~i~~~~~a~~~~~  294 (297)
                      +.+.+|      +++...|.-=-++.-.+.+... +|+...-+.+..++-=+.+.+......|
T Consensus        81 ~~~~~~------~lav~sG~GwYSlsg~~i~~~~-~~~~G~iafl~n~~RE~~a~~~~P~~~r  136 (191)
T PF03956_consen   81 GLSLKE------SLAVASGFGWYSLSGVLITQLY-GPELGTIAFLSNLFREILAIILIPLLAR  136 (191)
T ss_pred             cCCHHH------HHHHHccCcHHHhHHHHHHhhh-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655      6666677766677777666655 4776554555555544455555555544

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=91.56  E-value=12  Score=35.10  Aligned_cols=100  Identities=20%  Similarity=0.320  Sum_probs=66.6

Q ss_pred             HHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHHHHHHcC
Q 022453           25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTD  104 (297)
Q Consensus        25 ~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t~~~~  104 (297)
                      ++++.|.-.   |+...+.|||..+.+...|+.+.-  ++..+    ..++.++..+..+-+.+.+=|.++-.+-++++ 
T Consensus        75 IF~GIGAmt---DFgpllanP~~~llGaaAQ~Gif~--t~~~A----~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA-  144 (360)
T PF03977_consen   75 IFMGIGAMT---DFGPLLANPKTLLLGAAAQFGIFA--TFLGA----ILLGFTPKEAASIGIIGGADGPTSIFVSSKLA-  144 (360)
T ss_pred             HHHHHhHHH---hhHHHHhCHHHHHHHHHHHHhHHH--HHHHH----HHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-
Confidence            345777655   555667899999999999998764  44444    55688888888888888877665555545554 


Q ss_pred             CCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453          105 PPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  135 (297)
Q Consensus       105 Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~  135 (297)
                      -|.- -.++..+-| .-+.++.-|-.+.++..
T Consensus       145 p~Ll-gpIaVaAYsYMaLvPiiqPpimklLtt  175 (360)
T PF03977_consen  145 PHLL-GPIAVAAYSYMALVPIIQPPIMKLLTT  175 (360)
T ss_pred             HHHH-HHHHHHHHHHHHHHhhhhhHHHHHhcC
Confidence            2333 333333333 34667788888888864

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=91.16  E-value=18  Score=36.32  Aligned_cols=53  Identities=28%  Similarity=0.461  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCc
Q 022453           18 YAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP   77 (297)
Q Consensus        18 ~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~   77 (297)
                      -...+.++||..|+.++.+++++..   +....+...+.+..-++++++.    ..++.+
T Consensus        61 a~lGli~llF~~Gle~d~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  113 (558)
T PRK10669         61 AELGVILLMFGVGLHFSLKDLMAVK---SIAIPGAIAQIAVATLLGMALS----AVLGWS  113 (558)
T ss_pred             HHHHHHHHHHHhHhcCCHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH----HHhCCC
Confidence            4567889999999999999997652   2333344445555445555554    555544

>COG2855 Predicted membrane protein [Function unknown]

Probab=91.07  E-value=2.4  Score=39.66  Aligned_cols=82  Identities=18%  Similarity=0.181  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhcccchhhhccccchHHHHHH-HHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 022453          154 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVT-ACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAF  232 (297)
Q Consensus       154 llPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~l-lliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~  232 (297)
                      .+-+++|+.++ .+++..++.++-...-++..+ .-++..-+..|.+++.+ .|...+..........+..+|+++|.+|
T Consensus        41 ~lAIllGi~l~-~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~-~G~~~v~~~~~~l~~t~~~~~~lg~~lg  118 (334)
T COG2855          41 TLAILLGILLG-ILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIAD-VGGSGVLIIAITLSSTFLFAYFLGKLLG  118 (334)
T ss_pred             HHHHHHHHHHh-ccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHH-cCccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34455788887 333333333333222222222 22223345567777766 4666666666677789999999999998


Q ss_pred             cCccc
Q 022453          233 AEAHD  237 (297)
Q Consensus       233 l~~~~  237 (297)
                      +|++.
T Consensus       119 ld~~~  123 (334)
T COG2855         119 LDKKL  123 (334)
T ss_pred             CCHHH
Confidence            88865

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=89.08  E-value=13  Score=35.25  Aligned_cols=105  Identities=12%  Similarity=0.118  Sum_probs=77.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHH-
Q 022453           20 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-   98 (297)
Q Consensus        20 ~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~-   98 (297)
                      ..-.++.-..|++.+...+++..|--.......+..+...-..++.+.    +..+.|...    ..++.+|||...-. 
T Consensus       241 va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~----~~~~i~~~t----a~La~sPGGl~~ma~  312 (352)
T COG3180         241 VAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLS----WLTGIDLNT----AYLATSPGGLDTMAA  312 (352)
T ss_pred             HHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHH----HhcCCCHHH----HHHHcCCCcHHHHHH
Confidence            445556668899999999988776655666666666677777778886    777776544    36799999988864 


Q ss_pred             HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 022453           99 ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  133 (297)
Q Consensus        99 ~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll  133 (297)
                      .+...+-|.+ +-.+++.+=-+.-....|....++
T Consensus       313 ~A~~l~ad~a-~V~a~q~lRll~il~i~p~l~r~l  346 (352)
T COG3180         313 IAAALGADPA-FVMALQVLRLLFILLLGPALARFL  346 (352)
T ss_pred             HHHHcCCChH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666999 888888887777777777766654

>PRK04972 putative transporter; Provisional

Probab=88.49  E-value=4.1  Score=41.08  Aligned_cols=58  Identities=10%  Similarity=0.079  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HhhccCcccccchhheeeeeecccchHHHHHHHHHhCCCC
Q 022453          205 FGLTILLLIITFHLSAFVAGYVVT-GLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDP  268 (297)
Q Consensus       205 ~~~~~~~~~~~l~~~~~~~g~~l~-~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p  268 (297)
                      .++.+.+..++.......++++++ +.+|++..      +.+..-+|.+...-++.-+...-+++
T Consensus       471 ~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~------~~~G~~aG~~t~~~~l~~~~~~~~~~  529 (558)
T PRK04972        471 VGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA------LLFGAIMGARTCAPAMEIISDTARSN  529 (558)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------HHHHHHhCCCCCcHHHHHHHhhcCCC
Confidence            367776677777777778888888 46666654      46666778887776666666555543

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=87.28  E-value=6.2  Score=39.85  Aligned_cols=68  Identities=24%  Similarity=0.277  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhcC-hhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccC
Q 022453           19 APALGFLMFAVGVNSSEKDFIEAFKR-PAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVS   91 (297)
Q Consensus        19 ~~~l~~~mf~~gl~l~~~~~~~~~~~-p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P   91 (297)
                      ...+.+-+|+.|++.-++=++...|+ .+..+.+++. .+..=+.++++.    +++++|+..+.|++-=+..-
T Consensus        61 ~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~-~~~~~~~~~~~~----~~~g~~~~~~~Gl~aGalT~  129 (562)
T TIGR03802        61 AVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVF-AVSGLITVYALA----KIFGLDKGTAAGLAAGGLTQ  129 (562)
T ss_pred             HHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHH----HHhCCCHHHHHHHHhchhhc
Confidence            45667777899999999888766554 3444444433 233335566666    88999999999988554443

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=87.25  E-value=21  Score=31.72  Aligned_cols=96  Identities=15%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             HhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccchhheeeeeecccchHHHHHHHHHhCCCCcc-h
Q 022453          193 PLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLV-S  271 (297)
Q Consensus       193 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~~p~~-~  271 (297)
                      -+++|.+.+.++ ++.+.....+=...++..+++++|+++++++-    .+++.=-  .-.+++|+-++...-+.|+. +
T Consensus        78 PLYkq~~~ik~~-w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~----~~Sl~Pk--SvTTpiAm~vs~~iGGip~lta  150 (230)
T COG1346          78 PLYKQRHLIKRH-WKPILAGVLVGSVVAIISGVLLAKLFGLSPEL----ILSLLPK--SVTTPIAMEVSESIGGIPALTA  150 (230)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH----HHHhccc--ccccHHHHHHHHhcCCchHHHH
Confidence            457788877765 33455555556678889999999999887754    3443321  22345677777776666664 4


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhc
Q 022453          272 VPPAISTVIMSLMGFFLVMLWAKK  295 (297)
Q Consensus       272 lp~~~~~~~q~i~~~~~a~~~~~~  295 (297)
                      +-+++-++.-.++|..+-...|-|
T Consensus       151 v~Vi~tGi~Gavlg~~llk~~~i~  174 (230)
T COG1346         151 VFVILTGILGAVLGPLLLKLLRIR  174 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccC
Confidence            455566777788887776666533

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=87.19  E-value=9.8  Score=33.74  Aligned_cols=88  Identities=24%  Similarity=0.198  Sum_probs=67.0

Q ss_pred             HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHH---HHHHHcCCCCcchHH
Q 022453           36 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN---YATFLTDPPLAPLSI  112 (297)
Q Consensus        36 ~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~---~~t~~~~Gd~~~ls~  112 (297)
                      |+.+...||++.+..+.+.--++-=..++.++    +.++.+++...     +..|=..+++   -.++..||-.+ ++.
T Consensus        81 kq~~~ik~~w~~I~~g~~vGs~~ai~s~~lla----k~~g~~~~~~~-----Sl~PkSvTTpiAm~vs~~iGGip~-lta  150 (230)
T COG1346          81 KQRHLIKRHWKPILAGVLVGSVVAIISGVLLA----KLFGLSPELIL-----SLLPKSVTTPIAMEVSESIGGIPA-LTA  150 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHH-----HhcccccccHHHHHHHHhcCCchH-HHH
Confidence            44555566677777777766555556677777    88999988654     5567666554   37899999999 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 022453          113 VMTSLSTATAVFVTPLLSLLL  133 (297)
Q Consensus       113 ~lt~~st~l~~~~~Pl~~~ll  133 (297)
                      ..+.++-++.-+.-|..+..+
T Consensus       151 v~Vi~tGi~Gavlg~~llk~~  171 (230)
T COG1346         151 VFVILTGILGAVLGPLLLKLL  171 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999888876

>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit

Probab=85.43  E-value=32  Score=32.28  Aligned_cols=100  Identities=18%  Similarity=0.258  Sum_probs=58.6

Q ss_pred             HHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCC------chhHHHHHHHHhccCchhhHHH
Q 022453           25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGL------PTPIGAGIMLVSCVSGAQLSNY   98 (297)
Q Consensus        25 ~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l------~~~~~~gl~l~~~~P~~~~s~~   98 (297)
                      ++++.|.-.   |+...+.|||..+.+...|+.+.--+..+      ..++.      +...+..+-+.+.+=|.++-.+
T Consensus        69 IFlGIGAmt---DFgpllanP~~~llGaaAQ~GiF~t~~~A------~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~  139 (354)
T TIGR01109        69 IFMGIGALT---DFGPLLANPRTLLLGAAAQFGIFATVFGA------LTLNFFGIISFSLPQAAAIGIIGGADGPTAIYL  139 (354)
T ss_pred             HHHhccHHh---hhHHHHhChHHHHHHHHHHhhHHHHHHHH------HHhCCCcccccChhhceeeeeeccCCCchhhhh
Confidence            345777655   45566789999999999999876433333      33444      4566666666676655544444


Q ss_pred             HHHHcCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453           99 ATFLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  135 (297)
Q Consensus        99 ~t~~~~Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~  135 (297)
                      -++++. |.- -+++..+-| .-+.++.-|-.+.++..
T Consensus       140 s~~lap-~Ll-g~IaVAAYsYMaLvPiiqPpimklLtt  175 (354)
T TIGR01109       140 SGKLAP-ELL-AAIAVAAYSYMALVPIIQPPIMKALTS  175 (354)
T ss_pred             Hhhhhh-HHH-HHHHHHHHHHHHHHhcccchHHHhhcC
Confidence            444432 222 233333322 34556677777777754

This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.

>PRK15086 ethanolamine utilization protein EutH; Provisional

Probab=84.51  E-value=38  Score=32.22  Aligned_cols=129  Identities=16%  Similarity=0.257  Sum_probs=72.8

Q ss_pred             HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhh---hhhccCCchhHHHHHHHHhccCchhhHHHHHH-----------
Q 022453           36 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI---SVSVFGLPTPIGAGIMLVSCVSGAQLSNYATF-----------  101 (297)
Q Consensus        36 ~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~---~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~t~-----------  101 (297)
                      +++.|.++.=..+..+...-..+.|.++..+...   -+..++.||....+.++-.=+=|-..+.-++.           
T Consensus        33 ~~FeeGi~aMG~lalsm~GI~~laP~ls~~l~~ii~Pi~~~lgaDpsmfa~siLA~DMGGY~LA~~la~~~~~~~fsG~i  112 (372)
T PRK15086         33 EQFEEGIMAMGPLALAMVGIMALAPVLAHVLGPVIIPIYEALGADPSMFATTLLAVDMGGYQLAKELAGDPEAWLFSGLI  112 (372)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHhcCcCHHHHHHHhcChhhHHHHHHH
Confidence            3455555554556777777777888888776521   01335678888777665443433333322221           


Q ss_pred             -------------------HcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHHH
Q 022453          102 -------------------LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLL  162 (297)
Q Consensus       102 -------------------~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~~  162 (297)
                                         +-+-|.+     --....+..++++|.-+.. .|--..+|+..++.++.-.+++-.+++..
T Consensus       113 lgsmlG~TIvFtIPVaLgii~k~D~~-----yla~Gil~GiitIPiG~~v-ggl~~g~~~~~il~NL~Piii~~illa~G  186 (372)
T PRK15086        113 LGSMMGATIVFTIPVALGIIEKEDRK-----YLALGVLAGIITIPIGCLI-GGLVAGFDFALILRNLIPVIIFAILLALG  186 (372)
T ss_pred             HHHhccceEEeeHHhhHhhcchhhHH-----HHHHHHHHHhHhhcHHHHH-HHHHHhCCHHHHHHHHhHHHHHHHHHHHH
Confidence                               1122222     1122334445555554321 12224688888899999999999999888


Q ss_pred             HHHhcccc
Q 022453          163 LNRFFPRI  170 (297)
Q Consensus       163 lr~~~~~~  170 (297)
                      ++++..+.
T Consensus       187 L~~~p~~m  194 (372)
T PRK15086        187 LKFIPEKM  194 (372)
T ss_pred             HHHHHHHH
Confidence            88665433

>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional

Probab=84.38  E-value=39  Score=32.28  Aligned_cols=102  Identities=19%  Similarity=0.243  Sum_probs=61.3

Q ss_pred             HHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhh-c---cCCchhHHHHHHHHhccCchhhHHHHH
Q 022453           25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVS-V---FGLPTPIGAGIMLVSCVSGAQLSNYAT  100 (297)
Q Consensus        25 ~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~-~---~~l~~~~~~gl~l~~~~P~~~~s~~~t  100 (297)
                      ++++.|.-.   |+...+.|||.++.|...|+.+.--...+..    . .   .+.+...+..+-+.+.+=|.++-.+-+
T Consensus       140 IF~GIGAMt---DFgpLlanP~~~llGaAAQ~GIF~t~~~A~~----l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss  212 (433)
T PRK15475        140 IFMGVGAMT---DFGPLLANPRTLLLGAAAQFGIFATVLGALT----LNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG  212 (433)
T ss_pred             HHHhccHHh---cchHHhhCHHHHHHHHHHHhhHHHHHHHHHH----HhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence            345777655   4556678999999999999987644433332    1 1   256666666666667776655444444


Q ss_pred             HHcCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453          101 FLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  135 (297)
Q Consensus       101 ~~~~Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~  135 (297)
                      +++. |.- -+++..+-| .-+.++.-|-.+.++..
T Consensus       213 kLAP-~Ll-g~IaVAAYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15475        213 KLAP-ELL-GAIAVAAYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             hhhh-HhH-HHHHHHHHHHHHHHhcccchHHHhccC
Confidence            4443 332 333333333 34566777888887753

>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional

Probab=84.36  E-value=39  Score=32.28  Aligned_cols=102  Identities=19%  Similarity=0.243  Sum_probs=61.1

Q ss_pred             HHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhh-c---cCCchhHHHHHHHHhccCchhhHHHHH
Q 022453           25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVS-V---FGLPTPIGAGIMLVSCVSGAQLSNYAT  100 (297)
Q Consensus        25 ~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~-~---~~l~~~~~~gl~l~~~~P~~~~s~~~t  100 (297)
                      ++++.|.-.   |+...+.|||.++.|...|+.+.--...+..    . .   .+.+...+..+-+.+.+=|.++-.+-+
T Consensus       140 IF~GIGAMt---DFgpLlanP~~~llGaAAQ~GIF~t~~~A~~----l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss  212 (433)
T PRK15477        140 IFMGVGAMT---DFGPLLANPRTLLLGAAAQFGIFATVLGALT----LNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG  212 (433)
T ss_pred             HHHhccHHh---cchHHhhCHHHHHHHHHHHhhHHHHHHHHHH----HhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence            345777655   4556678999999999999987644433332    1 1   256666666666667776655444444


Q ss_pred             HHcCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453          101 FLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  135 (297)
Q Consensus       101 ~~~~Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~  135 (297)
                      +++. |.- -+++..+-| .-+-++.-|-.+.++..
T Consensus       213 kLAP-~Ll-g~IaVAAYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15477        213 KLAP-ELL-GAIAVAAYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             hhhh-HhH-HHHHHHHHHHHHHHhcccchHHHhccC
Confidence            4442 332 333333333 34566777888887753

>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional

Probab=84.32  E-value=39  Score=32.27  Aligned_cols=102  Identities=19%  Similarity=0.243  Sum_probs=61.1

Q ss_pred             HHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhh-c---cCCchhHHHHHHHHhccCchhhHHHHH
Q 022453           25 LMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVS-V---FGLPTPIGAGIMLVSCVSGAQLSNYAT  100 (297)
Q Consensus        25 ~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~-~---~~l~~~~~~gl~l~~~~P~~~~s~~~t  100 (297)
                      ++++.|.-.   |+...+.|||.++.|...|+.+.--...+..    . .   .+.+...+..+-+.+.+=|.++-.+-+
T Consensus       140 IF~GIGAMt---DFgpLlanP~~~llGaAAQ~GIF~t~~~A~~----l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvss  212 (433)
T PRK15476        140 IFMGVGAMT---DFGPLLANPRTLLLGAAAQFGIFATVLGALT----LNYFGLISFTLPQAAAIGIIGGADGPTAIYLSG  212 (433)
T ss_pred             HHHhccHHh---cchHHhhCHHHHHHHHHHHhhHHHHHHHHHH----HhhcccCCCChhhchheeeeccCCCchHHHhHh
Confidence            345777655   4556678999999999999987644433332    1 1   256666666666667776655444444


Q ss_pred             HHcCCCCcchHHHHHHHH-HHHHHHHHHHHHHHHcC
Q 022453          101 FLTDPPLAPLSIVMTSLS-TATAVFVTPLLSLLLIG  135 (297)
Q Consensus       101 ~~~~Gd~~~ls~~lt~~s-t~l~~~~~Pl~~~ll~~  135 (297)
                      +++. |.- -+++..+-| .-+-++.-|-.+.++..
T Consensus       213 kLAP-~Ll-g~IaVAAYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15476        213 KLAP-ELL-GAIAVAAYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             hhhh-HhH-HHHHHHHHHHHHHHhcccchHHHhccC
Confidence            4442 332 333333333 34566777888887753

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=84.03  E-value=0.059  Score=50.98  Aligned_cols=141  Identities=19%  Similarity=0.309  Sum_probs=41.1

Q ss_pred             hhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHH--HHHHHhhhhh---cc--CCchhHHHHHHHH
Q 022453           15 ARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPIL--GYIFGTISVS---VF--GLPTPIGAGIMLV   87 (297)
Q Consensus        15 ~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Pll--a~~l~~~~~~---~~--~l~~~~~~gl~l~   87 (297)
                      +......+.++||..|+++|.+++++..|+.-..  +..  -...|..  ++...    .   ..  +.......|..+.
T Consensus        49 ~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~--~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~al~l~~~~~  120 (380)
T PF00999_consen   49 ELLAEIGLAFLLFEAGLELDIKELRRNWRRALAL--GLV--GFLLPFILVGFLLS----FFLFILGLSWAEALLLGAILS  120 (380)
T ss_dssp             -SSHHHHS--SSHHHHTTGGGG---------------------------------------------------TTHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccccccc--ccc--eeeehhhHHHHHHH----HhhccchhhhHHHhhhHHhhh
Confidence            3556788999999999999999999887764322  221  1222332  22322    1   12  3344555555555


Q ss_pred             hccCchhhHHH-HHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHHHHH
Q 022453           88 SCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLN  164 (297)
Q Consensus        88 ~~~P~~~~s~~-~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~~lr  164 (297)
                      .+.|+...... =.+..++|........+.++...+.+...+..... +++...+...........+..=...|...+
T Consensus       121 ~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (380)
T PF00999_consen  121 ATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSILISLA-QASGQSSLGQLLLSFLWIILIGIVIGLLFG  197 (380)
T ss_dssp             T--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT--------------------------------------
T ss_pred             cccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhhhhhhh-cccccccccchhcchhhhhhhheeeecccc
Confidence            55555544433 22333444442445666777888888777766665 333444444433333333333333344333

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=83.33  E-value=39  Score=31.41  Aligned_cols=106  Identities=18%  Similarity=0.204  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhhHHHH
Q 022453           20 PALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA   99 (297)
Q Consensus        20 ~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~s~~~   99 (297)
                      ..+-.-...+|.+++.+|+.+.-.+.  +........... .+++.+++   +.+++|++.+ -++=++.+=||.+...-
T Consensus        60 ~~Lr~gIVLlG~~l~~~~i~~~G~~~--~~~~~~~v~~~~-~~~~~lg~---r~~~l~~~~~-~Lia~GtsICG~SAi~A  132 (305)
T PF03601_consen   60 KLLRLGIVLLGFRLSFSDILALGWKG--LLIIIIVVILTF-LLTYWLGR---RLFGLDRKLA-ILIAAGTSICGASAIAA  132 (305)
T ss_pred             HHHHHHHHHHCccccHHHHHHhCccH--HHHHHHHHHHHH-HHHHHHHH---HHhCCCHHHH-HHHHhhcccchHHHHHH
Confidence            45666667889999999998865443  332222222222 33444442   7789887654 34444555566555432


Q ss_pred             ----HHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 022453          100 ----TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  133 (297)
Q Consensus       100 ----t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll  133 (297)
                          .+--+.|.+ .++..+.+-..++.+..|..-..+
T Consensus       133 ~a~~i~a~~~~~a-~ava~V~lfg~vam~~~P~l~~~l  169 (305)
T PF03601_consen  133 TAPVIKAKEEDVA-YAVATVFLFGTVAMFLYPLLGHAL  169 (305)
T ss_pred             HcccccCCCCcee-eeehHHHHHHHHHHHHHHHHHHHh
Confidence                233477888 999999999999999999998875

; GO: 0016021 integral to membrane

>PRK03818 putative transporter; Validated

Probab=82.07  E-value=12  Score=37.71  Aligned_cols=102  Identities=13%  Similarity=0.184  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHhcccchhhhcc----ccchHHHHHHHHHHHHHhHhch-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 022453          154 VVPIAAGLLLNRFFPRICNAIRP----FLPPLSVLVTACCVGAPLAINI-ESVMSPFGLTILLLIITFHLSAFVAGYVVT  228 (297)
Q Consensus       154 llPl~lG~~lr~~~~~~~~~~~~----~~~~~s~~~llliv~~~~~~~~-~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~  228 (297)
                      --++..|+++-++.+++.-++.+    .++-+...+++..+....+++. +.+.+ .++...+..++.+..+..+++...
T Consensus        34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~~  112 (552)
T PRK03818         34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRK-SGLRLNLFAVLIVILGGLVTAILH  112 (552)
T ss_pred             HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777755443322222    2333333333333333233332 22323 367776777888888888899998


Q ss_pred             HhhccCcccccchhheeeeeecccchHHHHHHHH
Q 022453          229 GLAFAEAHDVKALQRTLSYETGMQSSLLALALAN  262 (297)
Q Consensus       229 ~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~  262 (297)
                      +.+|++...      +...-+|....+-++.-|.
T Consensus       113 ~~~~~~~~~------~~G~~aGa~T~tp~l~aa~  140 (552)
T PRK03818        113 KLFGIPLPV------MLGIFSGAVTNTPALGAGQ  140 (552)
T ss_pred             HHhCCCHHH------HHHHhhccccccHHHHHHH
Confidence            888877654      5555566666655544444

>PRK04972 putative transporter; Provisional

Probab=81.34  E-value=17  Score=36.62  Aligned_cols=96  Identities=22%  Similarity=0.133  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhcccchhhhccccchHHHHHHHHHHHHHhHhch-HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022453          155 VPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI-ESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFA  233 (297)
Q Consensus       155 lPl~lG~~lr~~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~-~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l  233 (297)
                      -|+..|+++-++-++.    .+..+.+...+++..+....+++. +.+.+ .++......++.+..+..+++.+++.+|+
T Consensus        42 g~L~vgl~~g~~~~~~----~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (558)
T PRK04972         42 GVLVVSLLLGQQHFSI----NTDALNLGFMLFIFCVGVEAGPNFFSIFFR-DGKNYLMLALVMVGSALVIALGLGKLFGW  116 (558)
T ss_pred             HHHHHHHHHHhCCCCC----ChHHHHHHHHHHHHHHhhhhhHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5566666666654332    222222333333333332233332 22323 36777777788888999999999999988


Q ss_pred             CcccccchhheeeeeecccchHHHHHHH
Q 022453          234 EAHDVKALQRTLSYETGMQSSLLALALA  261 (297)
Q Consensus       234 ~~~~~~~~~~al~~~~g~rN~~la~~la  261 (297)
                      +...      +...-+|....+-++.-|
T Consensus       117 ~~~~------~~G~~aGa~T~tp~l~~a  138 (558)
T PRK04972        117 DIGL------TAGMLAGSMTSTPVLVGA  138 (558)
T ss_pred             CHHH------HHHHhhccccCcHHHHHH
Confidence            7754      555555555543333333

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain

Probab=81.12  E-value=9.9  Score=31.64  Aligned_cols=108  Identities=18%  Similarity=0.116  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHhccc------chhhhccccchHHHHHHHHHHHHHhHhch-HHhhhhhHHHHHHHHHHHHHH-HHHHH
Q 022453          153 VVVPIAAGLLLNRFFPR------ICNAIRPFLPPLSVLVTACCVGAPLAINI-ESVMSPFGLTILLLIITFHLS-AFVAG  224 (297)
Q Consensus       153 vllPl~lG~~lr~~~~~------~~~~~~~~~~~~s~~~llliv~~~~~~~~-~~i~~~~~~~~~~~~~~l~~~-~~~~g  224 (297)
                      .--|+..|+++-++.++      ..+.....++.+....++..+......+. +.+.++.++.......+.... .....
T Consensus        24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~  103 (154)
T TIGR01625        24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA  103 (154)
T ss_pred             cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            34566677777665432      11122223333444444443433333332 223232223233222333333 33333


Q ss_pred             HHHHHhhccCcccccchhheeeeeecccchHHHHHHHHHhCC
Q 022453          225 YVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ  266 (297)
Q Consensus       225 ~~l~~~~~l~~~~~~~~~~al~~~~g~rN~~la~~la~~~f~  266 (297)
                      +...+.+|++..      .+...-+|.+..+-++.-+...-+
T Consensus       104 ~~~~~~~~~~~~------~~~G~~aGa~T~tpaL~aa~~~~~  139 (154)
T TIGR01625       104 VALIKLLRINYA------LTAGMLAGATTNTPALDAANDTLR  139 (154)
T ss_pred             HHHHHHhCCCHH------HHHHHHhccccChHHHHHHHHHhc
Confidence            444466766654      466667788877777666665444

This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=80.96  E-value=79  Score=33.40  Aligned_cols=30  Identities=20%  Similarity=0.264  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHhcChhHH
Q 022453           19 APALGFLMFAVGVNSSEKDFIEAFKRPAAI   48 (297)
Q Consensus        19 ~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~   48 (297)
                      -..+.+..|..|++++.+.+++.++.+..+
T Consensus        76 eIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rL  105 (810)
T TIGR00844        76 RILLCLQVFAVSVELPRKYMLKHWVSVTML  105 (810)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHhHHHHHHH
Confidence            368899999999999999998877765543

This model is specific for the fungal members of this family.

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=80.70  E-value=55  Score=31.37  Aligned_cols=109  Identities=12%  Similarity=0.088  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHHHhcCCCCHHHHHHHhcChhH-HHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHhccCchhh
Q 022453           17 YYAPALGFLMFAVGVNSSEKDFIEAFKRPAA-IFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL   95 (297)
Q Consensus        17 ~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~-~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~~gl~l~~~~P~~~~   95 (297)
                      ...+.+...++.+-++.|.+++.+.-+|.-. ...+.+...+-.++ ++.+.+   ..++ ++..+..-.+++.-=| .+
T Consensus        56 v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~v-a~~l~~---~~l~-~~~wk~ag~l~gsyiG-Gs  129 (378)
T PF05684_consen   56 VWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVV-AFLLFG---GFLG-PEGWKIAGMLAGSYIG-GS  129 (378)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHh---hccc-chHHHHHHHHHhcccC-ch
Confidence            3456666777777778888888766543322 22333333333433 333321   2223 3344444444444444 44


Q ss_pred             HH--HHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 022453           96 SN--YATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLL  132 (297)
Q Consensus        96 s~--~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~l  132 (297)
                      .|  ......+-|.+ .=....+.+++.+-+.+.+++.+
T Consensus       130 ~N~~Av~~al~~~~~-~~~a~~aaDnv~~~~~~~~l~~l  167 (378)
T PF05684_consen  130 VNFVAVAEALGVSDS-LFAAALAADNVVMALWFAFLLAL  167 (378)
T ss_pred             hHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44  46777777777 77788888999988888877665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	297
3zuy_A	323	Crystal Structure Of A Bacterial Homologue Of The B		9e-23
3zux_A	332	Crystal Structure Of A Bacterial Homologue Of The B		2e-22

>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 323

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 21/253 (8%)
Query: 7   PPSFTWFTARYYAPAL-GFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 65
           P +F W  A  Y P L G +MF +G+     DF   FK P  +  G + QF + P   ++
Sbjct: 30  PDTFKW--AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWL 87
Query: 66  FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 125
              +      LP  I  G++LV C  G   SN  T+L    +A LS+ +TS+ST  +  +
Sbjct: 88  LSKL----LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVA-LSVAVTSVSTLISPLL 142
Query: 126 TPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS--- 182
           TP + L+L G+ L +   GM+ SI+++V++PI  GL++++        +   LP +S   
Sbjct: 143 TPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAA 202
Query: 183 -VLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKAL 241
            VL+    VGA     +ES +  F          + L  F A +  TGL +         
Sbjct: 203 IVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKW--TGLPYDA------- 253
Query: 242 QRTLSYETGMQSS 254
           Q+TL+ E GMQ+S
Sbjct: 254 QKTLTIEVGMQNS 266

>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 332

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 122/253 (48%), Gaps = 21/253 (8%)
Query: 7   PPSFTWFTARYYAPAL-GFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 65
           P +F W  A  Y P L G +MF +G+     DF   FK P  +  G + QF + P   + 
Sbjct: 35  PDTFKW--AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWC 92
Query: 66  FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 125
              +      LP  I  G++LV C  G   SN  T+L    +A LS+ +TS+ST T+  +
Sbjct: 93  LSKL----LNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVA-LSVAVTSVSTLTSPLL 147
Query: 126 TPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS--- 182
           TP + L+L G+ L +   GM+ SI+++V++PI  GL++++        +   LP +S   
Sbjct: 148 TPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAA 207
Query: 183 -VLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKAL 241
            VL+    VGA     +ES +  F          + L  F A +  TGL +         
Sbjct: 208 IVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKW--TGLPYDA------- 258
Query: 242 QRTLSYETGMQSS 254
           Q+ L+ E GMQ+S
Sbjct: 259 QKALTIEVGMQNS 271

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	297
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	2e-72
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332

 Score =  225 bits (575), Expect = 2e-72
 Identities = 89/297 (29%), Positives = 144/297 (48%), Gaps = 12/297 (4%)

Query: 2   LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPI 61
            A   P +F W    Y    LG +MF +G+     DF   FK P  +  G + QF + P 
Sbjct: 30  AAFFAPDTFKWAGP-YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPA 88

Query: 62  LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT 121
             +        +  LP  I  G++LV C  G   SN  T+L    +A LS+ +TS+ST T
Sbjct: 89  TAWCL----SKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVA-LSVAVTSVSTLT 143

Query: 122 AVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 181
           +  +TP + L+L G+ L +   GM+ SI+++V++PI  GL++++        +   LP +
Sbjct: 144 SPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLV 203

Query: 182 SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL 241
           SV      +GA +  +   +M   GL I  +++  +   ++ G+                
Sbjct: 204 SVAAIVLIIGAVVGASKGKIME-SGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDA---- 258

Query: 242 QRTLSYETGMQSSLLALALANRFF-QDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 297
           Q+ L+ E GMQ+S LA ALA   F   P+V+VP A+ +V  ++ G  L   WA K+ 
Sbjct: 259 QKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAG 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 48/341 (14%), Positives = 95/341 (27%), Gaps = 79/341 (23%)

Query: 8   PSFTWFTARYY----APALGFLMFAVGVNSSEKDFIEAFK-----RPAAIFAGYVGQFVV 58
            ++ +  +        P++   M+    +    D  + F      R             +
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND-NQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 59  KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLS 118
           +P          V + G+    G+G    + V+     +Y             + + + +
Sbjct: 148 RPAKN-------VLIDGVL---GSG---KTWVALDVCLSYK-VQCKMDFKIFWLNLKNCN 193

Query: 119 TATAVFVTPLLSLLL-IGKRLPVDVKGMVSSILQIVVVPIA-AGLLLNRFFPR------- 169
           +   V +  L  LL  I            +  L+I  +      LL ++ +         
Sbjct: 194 SPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 170 ICNA--IRPFLPPLSVLVT------ACCVGAPLAINIESVMSPFGLT------ILLLII- 214
           + NA     F     +L+T         + A    +I        LT      +LL  + 
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 215 --TFHLSAFVAG---YVVTGLAFAEAHDVKA-LQRTLSY-----ETGMQSSLLAL--ALA 261
                L   V       ++ +A     D  A              T ++SSL  L  A  
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 262 NRFFQD----PL-VSVPPAISTVIMSLMGFFLVMLWAKKSE 297
            + F      P    +P  +           L ++W    +
Sbjct: 372 RKMFDRLSVFPPSAHIPTIL-----------LSLIWFDVIK 401

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	297
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	100.0

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=100.00  E-value=1.5e-52  Score=389.84  Aligned_cols=285  Identities=31%  Similarity=0.554  Sum_probs=269.9

Q ss_pred             eeeecCCccccchhhhHHHHHHHHHHHhcCCCCHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHH
Q 022453            2 LALVFPPSFTWFTARYYAPALGFLMFAVGVNSSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIG   81 (297)
Q Consensus         2 ~~~~~P~~~~~~~~~~~~~~l~~~mf~~gl~l~~~~~~~~~~~p~~~~~~l~~~~v~~Plla~~l~~~~~~~~~l~~~~~   81 (297)
                      +|+++|+.++++ ++++++.++++||.+|++++.+|+++.+||||.+..++++|++++|+++++++    +.++++|+++
T Consensus        30 lg~~~P~~~~~~-~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~----~~~~l~~~~~  104 (332)
T 3zux_A           30 AAFFAPDTFKWA-GPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLS----KLLNLPAEIA  104 (332)
T ss_dssp             HHHHCGGGTGGG-GGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH----HHTTCCHHHH
T ss_pred             HHHHcchhhhhh-HHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH----HHhCCChHHH
Confidence            578899999998 58999999999999999999999999999999999999999999999999998    7889999999


Q ss_pred             HHHHHHhccCchhhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCccccChHHHHHHHhHHHHHHHHHHH
Q 022453           82 AGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGL  161 (297)
Q Consensus        82 ~gl~l~~~~P~~~~s~~~t~~~~Gd~~~ls~~lt~~st~l~~~~~Pl~~~ll~~~~~~i~~~~i~~~l~~~vllPl~lG~  161 (297)
                      .|+++++||||+++|++||+++|||.+ +++.++.+||+++++++|+++.++.|+++++|+.+++.++...+++|+++|+
T Consensus       105 ~Glil~~~~P~~~~s~v~t~~a~Gd~~-la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~~~~~~~l~~~vllP~~lG~  183 (332)
T 3zux_A          105 VGVILVGCCPGGTASNVMTYLARGNVA-LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGL  183 (332)
T ss_dssp             HHHHHHHHSCCCTHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHhcCCchhHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccchhhhccccchHHHHHHHHHHHHHhHhchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccch
Q 022453          162 LLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL  241 (297)
Q Consensus       162 ~lr~~~~~~~~~~~~~~~~~s~~~llliv~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~l~~~~~l~~~~~~~~  241 (297)
                      ++|++.|++.+|.+|..+.++...++++++..++.+.+.+.+. ++.+....++++.++|.+||+++|.+|++++|    
T Consensus       184 l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~lg~~~~r~~~~~~~~----  258 (332)
T 3zux_A          184 IVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES-GLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDA----  258 (332)
T ss_dssp             HHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH----
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH----
Confidence            9999999999999999999999999999998888888877664 55677778899999999999999999999988    


Q ss_pred             hheeeeeecccchHHHHHHHHHhCC-CCcchhhHHHHHHHHHHHHHHHHHHHhhccC
Q 022453          242 QRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPAISTVIMSLMGFFLVMLWAKKSE  297 (297)
Q Consensus       242 ~~al~~~~g~rN~~la~~la~~~f~-~p~~~lp~~~~~~~q~i~~~~~a~~~~~~~~  297 (297)
                      ++|+++|+|+||+++|+++|..+|+ +|++++|.++|+++|++.+++++.+|+||++
T Consensus       259 ~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~~  315 (332)
T 3zux_A          259 QKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKAG  315 (332)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            9999999999999999999999996 6899999999999999999999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00