Citrus Sinensis ID: 022468

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQGNARCSCVGKSVRLPKFKMLKRKYGDFTRKIKKLRFRIKIHGFRRFRQRWLTIPKFSSSMGYTKLD
Secondary Structure (PSIPRED)
cHHHHHHcccccEEEccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccEEEEEEcccEEEEEEEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEcccEEEEcccccccHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccEEEEEcccccccEEEEEEEHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccEEEEEccccEEEEEEEEEEcccccEEHHHHHHHHHHHHHHHHHHcccccEEccccccHHHHcccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccEEccccHHHHHccHccHHHHHHHHHHHHHHHHHHHHHHHEEEEccHHHHHHHHHcccccccccccEEcc
Coil and Loop (DISEMBL)
MEMVKAISLDVVEIVQPAKEGYQLTLRLNlskipcgkdsMKVISEISMVQATILSSQLKEMLWTVNsedtfqgmckpiklvyhpretfyvikqplkiaavfpmrfkeHSDVIIATAFLQELtdvgsskkwakvppccwapipppelrgepfedlstnggfvtfdiyprhiegKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVEtlqgpnlgedeqtekvqgnarcscvgksvrlpkfkMLKRKYGDFTRKIKKLRFRIKIHGFRRFRQRWltipkfsssmgytkld
Flexible Loop (DISEMBL)
MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVetlqgpnlgedeqtekvqgnarcscvgksvrlpkfkmlkrkygdftrkikklrfrikihgfrrfrqrwltipkfsssmgytkld
Low Complexity Region (SEG)
MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVppccwapipppELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQGNARCSCVGKSVRLPKFKMLKRKYGDFTrkikklrfrikiHGFRRFRQRWLTIPKFSSSMGYTKLD
Disordered region (IsUnstruct)
*****AISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLE*L*********************ARCSCVGKSVRLPKFKMLKRKYGDFTRKIKKLRFRIKIHGFRRFRQRWLTIPKF**********
Disordered Region (DISOPRED)
MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEML*****************LVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVG*******VPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETL************************************RKYGDFTRKIKKLRFRIKIHGFRRFRQRWLTIPKFSS********
Disordered Region (DISEMBL)
MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLG************RCSCVGKSVRLPKFKMLKRKYGDFTRKIKKLRFRIKIHGFRRFRQRWLTIPKFSS********
Disordered Region (DISPRO)
MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQGNARCSCVGKSVRLPKFKMLKRKYGDFTRKIKKLRFRIKIHGFRRFRQRWLTIPKFSSSMGY**L*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQGNARCSCVGKSVRLPKFKMLKRKYGDFTRKIKKLRFRIKIHGFRRFRQRWLTIPKFSSSMGYTKLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q8WTM6	301	Probable actin-related pr	yes	no	0.641	0.631	0.27	4e-19
Q9VIM5	301	Probable actin-related pr	yes	no	0.662	0.651	0.270	7e-19
Q3MHR7	300	Actin-related protein 2/3	yes	no	0.658	0.65	0.266	2e-18
Q5R5Z5	300	Actin-related protein 2/3	yes	no	0.658	0.65	0.266	2e-18
O15144	300	Actin-related protein 2/3	yes	no	0.658	0.65	0.266	2e-18
P85970	300	Actin-related protein 2/3	yes	no	0.658	0.65	0.266	2e-18
Q9CVB6	300	Actin-related protein 2/3	yes	no	0.658	0.65	0.266	4e-18
O96623	293	Actin-related protein 2/3	yes	no	0.456	0.460	0.354	3e-17
Q7PVX8	304	Probable actin-related pr	yes	no	0.665	0.648	0.254	1e-16
P53731	342	Actin-related protein 2/3	yes	no	0.75	0.649	0.242	4e-15

>sp|Q8WTM6|ARPC2_CAEEL Probable actin-related protein 2/3 complex subunit 2 OS=Caenorhabditis elegans GN=arx-4 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 99/200 (49%), Gaps = 10/200 (5%)

Query: 19  KEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPI 78
           ++G+ +TL  NL+ +P   D+  ++   S ++    +S  ++       ++  Q   K  
Sbjct: 89  EQGFNVTLEYNLADLPA--DTTDLVQAASALKRNCFASVFEKYF---EFQEAGQEGHKRA 143

Query: 79  KLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCW 138
            + Y   ET Y+  +  ++  +F   FK+  DVII   FLQE  +    +K ++  P   
Sbjct: 144 VINYRDDETMYIEAKADRVTVIFSTVFKDADDVIIGKVFLQEFRE---GRKASQTAPAVL 200

Query: 139 API--PPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCT 196
             +  PP EL+  P   +  N G++TF ++PRH   K  D T+  + +F  Y+ YH+KC+
Sbjct: 201 YSLGEPPLELKDLPEARVGDNVGYITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCS 260

Query: 197 KGFIQRRMRKRLESLVETLQ 216
           K ++  RMR +    ++ L 
Sbjct: 261 KVYLHTRMRAKTTDFLKVLN 280

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.
Caenorhabditis elegans (taxid: 6239)

>sp|Q9VIM5|ARPC2_DROME Probable actin-related protein 2/3 complex subunit 2 OS=Drosophila melanogaster GN=Arc-p34 PE=2 SV=2

 Score = 94.7 bits (234), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 101/203 (49%), Gaps = 7/203 (3%)

Query: 14  IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
           ++   +EGY +++ +NL +IP  +D  ++   I +++    +S  ++  +    E   +G
Sbjct: 83  LLTDTEEGYNVSVLINLEEIP--EDCEQIAKRIGLLKRNCFASVFEK--YFDYQEQGEEG 138

Query: 74  MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
             + + + Y   ET YV  +P ++  VF   F++  DVII   F+QEL +   +   A  
Sbjct: 139 QKRAV-INYRNDETLYVEAKPDRVTVVFSTIFRDEDDVIIGKVFMQELREGRRASHTA-- 195

Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
           P   ++   PP         +  N G+VTF ++PRH   +  D T+  +  F  Y+ YH+
Sbjct: 196 PQVLFSHREPPLELANTDARVGDNIGYVTFVLFPRHTNKETRDNTINLIHMFRDYLHYHI 255

Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
           KC+K +I  RMR +    ++ L 
Sbjct: 256 KCSKAYIHSRMRAKTSDFLKVLN 278

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Drosophila melanogaster (taxid: 7227)

>sp|Q3MHR7|ARPC2_BOVIN Actin-related protein 2/3 complex subunit 2 OS=Bos taurus GN=ARPC2 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 8/203 (3%)

Query: 14  IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
           +V P + GY ++L  +L  +P  KDS  ++ +  M++    +S  ++       E+  +G
Sbjct: 84  LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138

Query: 74  MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
             + + + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  +   +   A  
Sbjct: 139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTA-- 195

Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
           P   ++   PP    +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+
Sbjct: 196 PQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHI 255

Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
           KC+K +I  RMR +    ++ L 
Sbjct: 256 KCSKAYIHTRMRAKTSDFLKVLN 278

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Bos taurus (taxid: 9913)

>sp|Q5R5Z5|ARPC2_PONAB Actin-related protein 2/3 complex subunit 2 OS=Pongo abelii GN=ARPC2 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 8/203 (3%)

Query: 14  IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
           +V P + GY ++L  +L  +P  KDS  ++ +  M++    +S  ++       E+  +G
Sbjct: 84  LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138

Query: 74  MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
             + + + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  +   +   A  
Sbjct: 139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTA-- 195

Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
           P   ++   PP    +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+
Sbjct: 196 PQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHI 255

Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
           KC+K +I  RMR +    ++ L 
Sbjct: 256 KCSKAYIHTRMRAKTSDFLKVLN 278

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Pongo abelii (taxid: 9601)

>sp|O15144|ARPC2_HUMAN Actin-related protein 2/3 complex subunit 2 OS=Homo sapiens GN=ARPC2 PE=1 SV=1

 Score = 93.6 bits (231), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 8/203 (3%)

Query: 14  IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
           +V P + GY ++L  +L  +P  KDS  ++ +  M++    +S  ++       E+  +G
Sbjct: 84  LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138

Query: 74  MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
             + + + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  +   +   A  
Sbjct: 139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTA-- 195

Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
           P   ++   PP    +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+
Sbjct: 196 PQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHI 255

Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
           KC+K +I  RMR +    ++ L 
Sbjct: 256 KCSKAYIHTRMRAKTSDFLKVLN 278

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Homo sapiens (taxid: 9606)

>sp|P85970|ARPC2_RAT Actin-related protein 2/3 complex subunit 2 OS=Rattus norvegicus GN=Arpc2 PE=1 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 8/203 (3%)

Query: 14  IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
           +V P + GY ++L  +L  +P  KDS  ++ +  M++    +S  ++       E+  +G
Sbjct: 84  LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138

Query: 74  MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
             + + + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  +   +   A  
Sbjct: 139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTA-- 195

Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
           P   ++   PP    +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+
Sbjct: 196 PQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNATARDNTINLIHTFRDYLHYHI 255

Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
           KC+K +I  RMR +    ++ L 
Sbjct: 256 KCSKAYIHTRMRAKTSDFLKVLN 278

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Rattus norvegicus (taxid: 10116)

>sp|Q9CVB6|ARPC2_MOUSE Actin-related protein 2/3 complex subunit 2 OS=Mus musculus GN=Arpc2 PE=1 SV=3

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 8/203 (3%)

Query: 14  IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
           +V P + GY ++L  +L  +P  KDS  ++ +  M++    +S  ++       E+  +G
Sbjct: 84  LVNP-EPGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138

Query: 74  MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
             + + + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  +   +   A  
Sbjct: 139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTA-- 195

Query: 134 PPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
           P   ++   PP    +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+
Sbjct: 196 PQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNATARDNTINLIHTFRDYLHYHI 255

Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
           KC+K +I  RMR +    ++ L 
Sbjct: 256 KCSKAYIHTRMRAKTSDFLKVLN 278

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Mus musculus (taxid: 10090)

>sp|O96623|ARPC2_DICDI Actin-related protein 2/3 complex subunit 2 OS=Dictyostelium discoideum GN=arcB PE=1 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 6/141 (4%)

Query: 78  IKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCC 137
           I + Y   ETFY+  Q   +  +F + FK+  DVI++  FLQ   DV   K  + VP   
Sbjct: 135 IAINYRTDETFYLKPQGDNVIVIFDIAFKDADDVILSKIFLQSFVDV--RKTISNVPSIT 192

Query: 138 WAPIPPP-ELRG-EPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKC 195
           ++   PP EL+G +       N GFV+F ++P HI  K+  ++   +  F  Y+ YH+KC
Sbjct: 193 FSQKDPPLELKGVKGVRAGQANHGFVSFVLFPAHI--KKPQESADLIQTFRDYLHYHIKC 250

Query: 196 TKGFIQRRMRKRLESLVETLQ 216
            KG++   MR R+ESL++ L 
Sbjct: 251 AKGYMHTSMRNRVESLIQVLN 271

Functions as component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the pointed end of the daughter actin filament. The Arp2/3 complex is involved in organizing the actin system in cell motility and chemotaxis, in phagocytosis and macropinocytosis, at late steps of endosome processing, and in mitosis. In concert with a group of other proteins, the Arp2/3 complex plays a general role in the rapid activation and adaptation of the actin system to its multiple functions.

Dictyostelium discoideum (taxid: 44689)

>sp|Q7PVX8|ARPC2_ANOGA Probable actin-related protein 2/3 complex subunit 2 OS=Anopheles gambiae GN=Arc-p34 PE=3 SV=2

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 14  IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEML-WTVNSEDTFQ 72
           +V P ++GY +++ ++L  IP  ++  + + +I +++    +S  ++   +    E   +
Sbjct: 84  LVAP-EDGYNVSVLVDLENIP--ENWEETVRKIGLLKRNCFASVFEKYFDFQSQGEGEGE 140

Query: 73  GMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAK 132
           G  + + + Y   ET YV  +P ++  VF   F++  DV++   F+QEL +   +   A 
Sbjct: 141 GQKRAV-INYRNDETMYVEAKPDRVTVVFSTIFRDEDDVVLGKVFMQELREGRRASHTA- 198

Query: 133 VPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYH 192
            P   ++   PP         +  N G+VTF ++PRH   +  D T+  +  F  Y+ YH
Sbjct: 199 -PQVLFSHREPPLELANTGARVGENIGYVTFVLFPRHTAKETRDNTINLIHMFRDYLHYH 257

Query: 193 VKCTKGFIQRRMRKRLESLVETLQ 216
           +KC+K +I  RMR +    ++ L 
Sbjct: 258 IKCSKAYIHSRMRAKTTEFLKVLN 281

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Anopheles gambiae (taxid: 7165)

>sp|P53731|ARPC2_YEAST Actin-related protein 2/3 complex subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARC35 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 25/247 (10%)

Query: 8   SLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILS-------SQLKE 60
           SL  V I    + GY  TL++ L+++       + I ++S+++  ILS       S+  E
Sbjct: 87  SLGGVTIPSEVEPGYDYTLQITLAEL-----VQESILQLSVLKTIILSFPFELAISKFIE 141

Query: 61  M---------LWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDV 111
           +               E    G      + Y   E  ++     ++  +F   F++ +D 
Sbjct: 142 LSQQQPAPVEAEITGGEVAANGDNTLFTIKYRDEENIFIKPSNDRVTIIFETIFQDETDK 201

Query: 112 IIATAFLQELTDV-GSSKKWAKVPPCCWAPIPPPELRG--EPFEDLSTNGGFVTFDIYPR 168
           I    FLQE  D    +++    P   ++  PP EL+   +P +    +  F+TF ++PR
Sbjct: 202 IFGKVFLQEFVDARKRNRQIQSAPQVLYSHEPPLELKRLYQPPKVAEQSRRFITFVLFPR 261

Query: 169 HIEGKRLD-KTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTE 227
           H + K L   ++  L  F  Y  YH+KC+K ++  RMR R++S ++ L    + ED++ +
Sbjct: 262 HFQTKELQFHSICQLTLFRNYFHYHIKCSKAYMHSRMRFRVDSFIKVLNRAKVDEDDEND 321

Query: 228 KVQGNAR 234
           ++    R
Sbjct: 322 ELSAEGR 328

Functions as actin-binding component of the Arp2/3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
359477765	368	PREDICTED: probable actin-related protei	0.983	0.790	0.705	1e-116
296083715	362	unnamed protein product [Vitis vinifera]	0.972	0.795	0.709	1e-116
224099973	349	predicted protein [Populus trichocarpa]	0.925	0.785	0.705	1e-113
356533473	368	PREDICTED: probable actin-related protei	0.979	0.788	0.671	1e-110
147802915	349	hypothetical protein VITISV_000730 [Viti	0.918	0.779	0.652	1e-102
224107493	270	predicted protein [Populus trichocarpa]	0.726	0.796	0.8	4e-99
334184656	374	actin-related protein C2B [Arabidopsis t	0.986	0.780	0.562	2e-91
255574935	355	conserved hypothetical protein [Ricinus	0.820	0.684	0.699	3e-91
30685673	365	actin-related protein C2B [Arabidopsis t	0.956	0.775	0.543	3e-86
449432516	329	PREDICTED: probable actin-related protei	0.729	0.656	0.689	2e-85

>gi|359477765|ref|XP_002282041.2| PREDICTED: probable actin-related protein 2/3 complex subunit 2-like [Vitis vinifera]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/299 (70%), Positives = 246/299 (82%), Gaps = 8/299 (2%)

Query: 1   MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKE 60
           +EM+K I  DV+EIV+PA+EGYQLTLRL+L+KIP GKD  KVI++IS VQA ILSSQLKE
Sbjct: 75  IEMIKGICSDVLEIVEPAREGYQLTLRLDLAKIPQGKDGAKVIAQISSVQAVILSSQLKE 134

Query: 61  MLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQE 120
           ML  VNS+DT QGM KPIKLVYHPRE F+VI+QP KI AVFPMRF+E+SDVIIATAF QE
Sbjct: 135 MLQNVNSQDTSQGMYKPIKLVYHPREPFFVIRQPQKITAVFPMRFRENSDVIIATAFFQE 194

Query: 121 LTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVW 180
           L DVGSS+ WAK PPC W+PIPPPELRGE FEDLSTNGGFV+FDI+  H+EGK+LDKTVW
Sbjct: 195 LMDVGSSEAWAKAPPCTWSPIPPPELRGELFEDLSTNGGFVSFDIFSHHVEGKQLDKTVW 254

Query: 181 SLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQG---NARCSC 237
           SLLNFYAYVKYHVKCT+GFIQRRM+ RLESLVE LQ  ++ E+E  +KV+G   +A C C
Sbjct: 255 SLLNFYAYVKYHVKCTRGFIQRRMKNRLESLVEVLQNASMEEEEHIQKVEGKWSDAGCRC 314

Query: 238 VGKSVRLPKFKMLKRKYGDFTRKIKKLRFRIKIHGFRRFRQRWLTIPKFSSSMGYTKLD 296
           V K V L + K+L R+   FT+KI   R  IKIHGF RFRQ+WLT+PKF S + YTKLD
Sbjct: 315 VRKLVSLSRSKVLNRR-CHFTKKI---RSPIKIHGFSRFRQQWLTMPKF-SLIKYTKLD 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083715|emb|CBI23704.3| unnamed protein product [Vitis vinifera]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/296 (70%), Positives = 244/296 (82%), Gaps = 8/296 (2%)

Query: 1   MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKE 60
           +EM+K I  DV+EIV+PA+EGYQLTLRL+L+KIP GKD  KVI++IS VQA ILSSQLKE
Sbjct: 75  IEMIKGICSDVLEIVEPAREGYQLTLRLDLAKIPQGKDGAKVIAQISSVQAVILSSQLKE 134

Query: 61  MLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQE 120
           ML  VNS+DT QGM KPIKLVYHPRE F+VI+QP KI AVFPMRF+E+SDVIIATAF QE
Sbjct: 135 MLQNVNSQDTSQGMYKPIKLVYHPREPFFVIRQPQKITAVFPMRFRENSDVIIATAFFQE 194

Query: 121 LTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVW 180
           L DVGSS+ WAK PPC W+PIPPPELRGE FEDLSTNGGFV+FDI+  H+EGK+LDKTVW
Sbjct: 195 LMDVGSSEAWAKAPPCTWSPIPPPELRGELFEDLSTNGGFVSFDIFSHHVEGKQLDKTVW 254

Query: 181 SLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQGNARCSCVGK 240
           SLLNFYAYVKYHVKCT+GFIQRRM+ RLESLVE LQ  ++ E+E  +KV+G   C CV K
Sbjct: 255 SLLNFYAYVKYHVKCTRGFIQRRMKNRLESLVEVLQNASMEEEEHIQKVEG---CRCVRK 311

Query: 241 SVRLPKFKMLKRKYGDFTRKIKKLRFRIKIHGFRRFRQRWLTIPKFSSSMGYTKLD 296
            V L + K+L R+   FT+KI   R  IKIHGF RFRQ+WLT+PKF S + YTKLD
Sbjct: 312 LVSLSRSKVLNRR-CHFTKKI---RSPIKIHGFSRFRQQWLTMPKF-SLIKYTKLD 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099973|ref|XP_002311692.1| predicted protein [Populus trichocarpa] gi|222851512|gb|EEE89059.1| predicted protein [Populus trichocarpa]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/295 (70%), Positives = 231/295 (78%), Gaps = 21/295 (7%)

Query: 2   EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEM 61
           +MVK +  D VEIV+PAKEGYQLTL+LNL+KIP GKD  KVI++IS VQA IL SQLKEM
Sbjct: 76  QMVKQVCSDAVEIVEPAKEGYQLTLKLNLAKIPRGKDPYKVITQISSVQAVILCSQLKEM 135

Query: 62  LWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQEL 121
           L  VNS+DT QGM KPIKLVYHPRE FYVI+QP KI AVFPMRFKEHSDVIIATAF QEL
Sbjct: 136 LRNVNSQDTSQGMNKPIKLVYHPREPFYVIRQPQKITAVFPMRFKEHSDVIIATAFFQEL 195

Query: 122 TDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWS 181
            DVGSS+KWAK PPC W+PIPPPELRGEP EDLSTNGGFVTFDI  RH+EGK+LDKTVWS
Sbjct: 196 MDVGSSEKWAKAPPCTWSPIPPPELRGEPLEDLSTNGGFVTFDISSRHVEGKKLDKTVWS 255

Query: 182 LLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQGNARCSCVGKS 241
           LLNFYAYVK HVK T+GFIQRRM+KRLE+                     +A C  VGK 
Sbjct: 256 LLNFYAYVKKHVKGTRGFIQRRMQKRLET---------------------HAECRYVGKL 294

Query: 242 VRLPKFKMLKRKYGDFTRKIKKLRFRIKIHGFRRFRQRWLTIPKFSSSMGYTKLD 296
           V L K K  KR+  D TRKI ++ FRIKIHGFRRF +RWLTIPKFSS + YTKL+
Sbjct: 295 VGLSKPKNFKRRCRDLTRKIMQIHFRIKIHGFRRFHRRWLTIPKFSSPLRYTKLE 349

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533473|ref|XP_003535288.1| PREDICTED: probable actin-related protein 2/3 complex subunit 2-like [Glycine max]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/295 (67%), Positives = 234/295 (79%), Gaps = 5/295 (1%)

Query: 1   MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKE 60
           +EMVK +  +VV I +PAKEGYQLTL+LNL++IP  KD  KVI EIS V + ILSSQLKE
Sbjct: 74  IEMVKGLCPNVVGIAEPAKEGYQLTLKLNLNQIPQNKDYDKVIKEISTVHSVILSSQLKE 133

Query: 61  MLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQE 120
           +LW VN +D  QGM KPIKLVYHP++ F++I+QP +I AVFP+RF+E SDVIIATAF QE
Sbjct: 134 ILWNVNFDDALQGMYKPIKLVYHPKDHFFLIRQPQRIIAVFPIRFREKSDVIIATAFFQE 193

Query: 121 LTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVW 180
           L DVGSS KWAKVPPC W+ IPPPELRGE FEDLSTNGGF TFDI  RH+EG RLDKTVW
Sbjct: 194 LVDVGSSDKWAKVPPCNWSAIPPPELRGEAFEDLSTNGGFFTFDISSRHVEGNRLDKTVW 253

Query: 181 SLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQGNARCSCVGK 240
           +LLNF AYV+YHVK TKGFIQRRMRKRLESLVE L   NL E+EQT++ Q         K
Sbjct: 254 NLLNFNAYVRYHVKSTKGFIQRRMRKRLESLVEVLHQTNLEENEQTKQHQV---YRYTKK 310

Query: 241 SVRLPKFKMLKRKYGDFTRKIKKLRFRIKIHGFRRFRQRWLTIPKFSSSMGYTKL 295
            VR  K+ +LK+++G F RKIK++RFR+KIHGF RFRQ+W   PKFS+  GYTK+
Sbjct: 311 LVRSAKYAVLKQRWGTFGRKIKRIRFRLKIHGFTRFRQQWFRFPKFST--GYTKI 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802915|emb|CAN66172.1| hypothetical protein VITISV_000730 [Vitis vinifera]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 195/299 (65%), Positives = 228/299 (76%), Gaps = 27/299 (9%)

Query: 1   MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKE 60
           +EM+K I  DV+EIV+PA+EGYQLTLRL+L+KIP GKD  KVI++IS VQA ILSSQLKE
Sbjct: 75  IEMIKGICSDVLEIVEPAREGYQLTLRLDLAKIPQGKDGAKVIAQISSVQAVILSSQLKE 134

Query: 61  MLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQE 120
           ML  VNS+DT QGM KPIKLVYHPRE F+VI+QP KI AVFPMRF+E+SDVIIATAF QE
Sbjct: 135 MLQNVNSQDTSQGMYKPIKLVYHPREPFFVIRQPQKITAVFPMRFRENSDVIIATAFFQE 194

Query: 121 LTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVW 180
           L DVGSS+ WAK PPC W+PIPPPELRGE FEDLSTNGGFV+FDI+  H+EGK+LDKTVW
Sbjct: 195 LMDVGSSEAWAKAPPCTWSPIPPPELRGELFEDLSTNGGFVSFDIFSHHVEGKQLDKTVW 254

Query: 181 SLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQG---NARCSC 237
           SLLNFYAYVKYHVK                    LQ  ++ E+E  +KV+G   +A C C
Sbjct: 255 SLLNFYAYVKYHVK-------------------VLQNASMEEEEHIQKVEGKWSDAGCRC 295

Query: 238 VGKSVRLPKFKMLKRKYGDFTRKIKKLRFRIKIHGFRRFRQRWLTIPKFSSSMGYTKLD 296
           V K V L + K+L R+   FT+KI   R  IKIHGF RFRQ+WLT+PKF S + YTKLD
Sbjct: 296 VRKLVSLSRSKVLNRR-CHFTKKI---RSPIKIHGFSRFRQQWLTMPKF-SLIKYTKLD 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107493|ref|XP_002314500.1| predicted protein [Populus trichocarpa] gi|222863540|gb|EEF00671.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 172/215 (80%), Positives = 190/215 (88%)

Query: 1   MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKE 60
           M+MVK +  D VEIV+PAKEGYQLTL+LN +K+P GKDS KVI++IS VQA ILSSQLKE
Sbjct: 56  MQMVKQVCSDAVEIVEPAKEGYQLTLKLNFAKVPIGKDSEKVITQISSVQAVILSSQLKE 115

Query: 61  MLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQE 120
           ML  VNS+DT QGM KPIKLVYHPRE FYVI+QP KI AVFPMRF+EHSDVIIATAF QE
Sbjct: 116 MLRNVNSQDTSQGMNKPIKLVYHPREPFYVIRQPQKITAVFPMRFREHSDVIIATAFFQE 175

Query: 121 LTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVW 180
           L DVGSS+KWAK PPC W+PIPPPELRGEP EDLSTNGGFV+FDI  RH+EGK+LDKTVW
Sbjct: 176 LMDVGSSEKWAKAPPCTWSPIPPPELRGEPLEDLSTNGGFVSFDISSRHVEGKKLDKTVW 235

Query: 181 SLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETL 215
           SLLNFYAYVK HVKCT+GFIQRRM+KRLESLVE L
Sbjct: 236 SLLNFYAYVKNHVKCTRGFIQRRMQKRLESLVEVL 270

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184656|ref|NP_001189666.1| actin-related protein C2B [Arabidopsis thaliana] gi|330253734|gb|AEC08828.1| actin-related protein C2B [Arabidopsis thaliana]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/302 (56%), Positives = 225/302 (74%), Gaps = 10/302 (3%)

Query: 2   EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEM 61
           E++K I + V++IV P + G+QLTL LNL  IP GK+++K+I+ IS +QA ILSSQLKEM
Sbjct: 76  EVIKNIGVGVIDIVDPPRLGFQLTLGLNLDNIPRGKEAIKIITRISELQAIILSSQLKEM 135

Query: 62  LWTVNSEDTFQGMCK-PIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQE 120
           L ++N +D  + +   PI++VYHP E FYV KQP KI AVFPM FK++SDV+IAT+F QE
Sbjct: 136 LRSLNFQDDSRSINNMPIRIVYHPSEPFYVFKQPEKITAVFPMNFKDNSDVVIATSFFQE 195

Query: 121 LTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVW 180
           L +VGS K   K P C W+PIPP +LRGEP +DL+TN GFV+FDI  RHIEGKRLDKTVW
Sbjct: 196 LVEVGSQKDMGKAPQCSWSPIPPLQLRGEPVQDLTTNSGFVSFDITSRHIEGKRLDKTVW 255

Query: 181 SLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQGNARCSCVGK 240
           +LLNFYA  KYH+KC++G+IQRRMRKR+E+LV+ L   +L E+    +   N RC  V +
Sbjct: 256 NLLNFYACAKYHIKCSRGYIQRRMRKRMETLVKLLNNTSLEEEAAQNE---NGRCKYVKE 312

Query: 241 SVRLPKFK-MLKRKYGDFTRKIKKLRFRIKIHGFRRFR--QRWLTIPKFS---SSMGYTK 294
            V++PK K M+K++  + TR++K  +FRIKI+G  RFR  QRW+++PKFS   S   YTK
Sbjct: 313 FVKVPKGKLMMKQRCKEMTRRVKISKFRIKINGCARFRFNQRWISLPKFSSKPSDKSYTK 372

Query: 295 LD 296
           LD
Sbjct: 373 LD 374

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574935|ref|XP_002528374.1| conserved hypothetical protein [Ricinus communis] gi|223532242|gb|EEF34046.1| conserved hypothetical protein [Ricinus communis]

 Score =  341 bits (874), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 172/246 (69%), Positives = 193/246 (78%), Gaps = 3/246 (1%)

Query: 3   MVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEML 62
           M+K +  D VEIV+P +EGYQLTL+LN +KIP  KDS KVI  IS VQA ILSSQLKEML
Sbjct: 77  MIKEVCSDAVEIVEPPREGYQLTLKLNFAKIPSEKDSEKVIRRISSVQAVILSSQLKEML 136

Query: 63  WTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELT 122
             VNS+ T +G  KPIKLVYHPRE FYV +   KI AVFPMRFKE SDVIIATAF QEL 
Sbjct: 137 ENVNSQGTSEGTNKPIKLVYHPREPFYVTQ---KITAVFPMRFKEPSDVIIATAFFQELM 193

Query: 123 DVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSL 182
           DVGSS+KWAK PPC W+PIPPPELRGE  EDLSTNGGFV+FDI  RH+EGK+LDKTVWSL
Sbjct: 194 DVGSSEKWAKAPPCTWSPIPPPELRGETLEDLSTNGGFVSFDISSRHVEGKKLDKTVWSL 253

Query: 183 LNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQGNARCSCVGKSV 242
           LNFYAYVK HVKCT+GFIQRRM+KRLESLVE LQ  N  ++E   KV+G ++   V K  
Sbjct: 254 LNFYAYVKNHVKCTRGFIQRRMQKRLESLVEGLQKGNSEQNEDGTKVKGMSQLIDVCKDN 313

Query: 243 RLPKFK 248
              KFK
Sbjct: 314 LDNKFK 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685673|ref|NP_850208.1| actin-related protein C2B [Arabidopsis thaliana] gi|330253733|gb|AEC08827.1| actin-related protein C2B [Arabidopsis thaliana]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 164/302 (54%), Positives = 220/302 (72%), Gaps = 19/302 (6%)

Query: 2   EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEM 61
           E++K I + V++IV P + G+QLTL LNL  IP GK+++K+I+ IS +QA ILSSQLKEM
Sbjct: 76  EVIKNIGVGVIDIVDPPRLGFQLTLGLNLDNIPRGKEAIKIITRISELQAIILSSQLKEM 135

Query: 62  LWTVNSEDTFQGMCK-PIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQE 120
           L ++N +D  + +   PI++VYHP E FYV KQP KI AVFPM FK++SDV+IAT+F Q+
Sbjct: 136 LRSLNFQDDSRSINNMPIRIVYHPSEPFYVFKQPEKITAVFPMNFKDNSDVVIATSFFQD 195

Query: 121 LTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVW 180
           +          K P C W+PIPP +LRGEP +DL+TN GFV+FDI  RHIEGKRLDKTVW
Sbjct: 196 M---------GKAPQCSWSPIPPLQLRGEPVQDLTTNSGFVSFDITSRHIEGKRLDKTVW 246

Query: 181 SLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQGNARCSCVGK 240
           +LLNFYA  KYH+KC++G+IQRRMRKR+E+LV+ L   +L E+    +   N RC  V +
Sbjct: 247 NLLNFYACAKYHIKCSRGYIQRRMRKRMETLVKLLNNTSLEEEAAQNE---NGRCKYVKE 303

Query: 241 SVRLPKFK-MLKRKYGDFTRKIKKLRFRIKIHGFRRFR--QRWLTIPKFS---SSMGYTK 294
            V++PK K M+K++  + TR++K  +FRIKI+G  RFR  QRW+++PKFS   S   YTK
Sbjct: 304 FVKVPKGKLMMKQRCKEMTRRVKISKFRIKINGCARFRFNQRWISLPKFSSKPSDKSYTK 363

Query: 295 LD 296
           LD
Sbjct: 364 LD 365

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432516|ref|XP_004134045.1| PREDICTED: probable actin-related protein 2/3 complex subunit 2-like [Cucumis sativus] gi|449486664|ref|XP_004157361.1| PREDICTED: probable actin-related protein 2/3 complex subunit 2-like [Cucumis sativus]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/216 (68%), Positives = 181/216 (83%)

Query: 1   MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKE 60
           +EMVK I    +EI++PAKEGY+LTLR+N +KI  G++S K+I++I+ VQA I+SS+LKE
Sbjct: 75  VEMVKQICSHAIEIIEPAKEGYELTLRINSAKILHGEESEKIITDIAAVQAVIISSRLKE 134

Query: 61  MLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQE 120
           +L  VNS   FQG+ +PIKLVYHPRE F+V+KQP KI  ++P+RFKE +DVIIATAF +E
Sbjct: 135 VLRNVNSPTLFQGISRPIKLVYHPREPFFVVKQPQKILIIYPIRFKEDTDVIIATAFFRE 194

Query: 121 LTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVW 180
           L DVGSS+KW+K PPCCW+PIPPPELRGEP E+LSTNGGFVTFDI   H+EGKRLD TVW
Sbjct: 195 LMDVGSSEKWSKAPPCCWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDNTVW 254

Query: 181 SLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQ 216
           SLLNF AYVKYHVK T+GFIQRRMR+RLE LVE L 
Sbjct: 255 SLLNFNAYVKYHVKTTRGFIQRRMRRRLEGLVEILH 290

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:505006160	318	DIS2 "AT1G30825" [Arabidopsis	0.716	0.666	0.358	8.9e-38
FB|FBgn0032859	301	Arpc2 "Actin-related protein 2	0.699	0.687	0.269	4.6e-18
UNIPROTKB|Q3MHR7	300	ARPC2 "Actin-related protein 2	0.655	0.646	0.262	3.2e-17
UNIPROTKB|O15144	300	ARPC2 "Actin-related protein 2	0.655	0.646	0.262	3.2e-17
RGD|1305848	300	Arpc2 "actin related protein 2	0.655	0.646	0.262	4.1e-17
MGI|MGI:1923959	300	Arpc2 "actin related protein 2	0.655	0.646	0.262	5.3e-17
WB|WBGene00021170	301	arx-4 [Caenorhabditis elegans	0.645	0.634	0.258	5.3e-17
UNIPROTKB|F1P1K3	308	ARPC2 "Uncharacterized protein	0.655	0.629	0.257	1.1e-16
UNIPROTKB|F1SS01	211	ARPC2 "Uncharacterized protein	0.635	0.890	0.261	1.1e-16
UNIPROTKB|G4MTR0	319	MGG_04745 "ARP2/3 complex 34 k	0.739	0.686	0.254	3.9e-16

TAIR|locus:505006160 DIS2 "AT1G30825" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 77/215 (35%), Positives = 131/215 (60%)

Query:     1 MEMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKE 60
             +E +K       +I+ P ++G+ LTL+LN SK+   +   +++++++ ++  ++ + LK 
Sbjct:    76 IEAIKTTYGTGFQILDPPRDGFSLTLKLNFSKV---RPDEELLTKLASIREVVMGAPLKI 132

Query:    61 MLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQE 120
             +   + S      + + + +++ P ETF+++ Q  K+   FPMRFK+  D I+AT+FL+E
Sbjct:   133 IFKHLASRTVAPELDRLVAIMHRPNETFFLVPQADKVTVAFPMRFKDSVDTILATSFLKE 192

Query:   121 LTDVGSSKKWAKVXXXXXXXXXXXELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVW 180
               +   +                 EL G P E LS N GFVTF I+PRH+EGK+LD+TVW
Sbjct:   193 FVEARRAAALNTAPSCSWSPTAPQELEGAPKETLSANAGFVTFVIFPRHVEGKKLDRTVW 252

Query:   181 SLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETL 215
             +L  F+AYV YHVK ++GF+  RMR+R+ES+++ L
Sbjct:   253 NLSTFHAYVSYHVKFSEGFMHTRMRRRVESMIQAL 287

GO:0005198 "structural molecule activity" evidence=ISS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0007015 "actin filament organization" evidence=TAS

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0010090 "trichome morphogenesis" evidence=NAS

FB|FBgn0032859 Arpc2 "Actin-related protein 2/3 complex, subunit 2" [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 58/215 (26%), Positives = 102/215 (47%)

Query:    14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
             ++   +EGY +++ +NL +IP  +D  ++   I +++    +S  ++  +    E   +G
Sbjct:    83 LLTDTEEGYNVSVLINLEEIP--EDCEQIAKRIGLLKRNCFASVFEK--YFDYQEQGEEG 138

Query:    74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
               + + + Y   ET YV  +P ++  VF   F++  DVII   F+QEL + G        
Sbjct:   139 QKRAV-INYRNDETLYVEAKPDRVTVVFSTIFRDEDDVIIGKVFMQELRE-GRRASHTAP 196

Query:   134 XXXXXXXXXXXELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
                        EL       +  N G+VTF ++PRH   +  D T+  +  F  Y+ YH+
Sbjct:   197 QVLFSHREPPLELANTDAR-VGDNIGYVTFVLFPRHTNKETRDNTINLIHMFRDYLHYHI 255

Query:   194 KCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEK 228
             KC+K +I  RMR +    ++ L      E + TEK
Sbjct:   256 KCSKAYIHSRMRAKTSDFLKVLNRAR-PEPKNTEK 289

GO:0005885 "Arp2/3 protein complex" evidence=ISS;NAS

GO:0003779 "actin binding" evidence=ISS

GO:0008064 "regulation of actin polymerization or depolymerization" evidence=NAS

GO:0034314 "Arp2/3 complex-mediated actin nucleation" evidence=ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP

GO:0030031 "cell projection assembly" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|Q3MHR7 ARPC2 "Actin-related protein 2/3 complex subunit 2" [Bos taurus (taxid:9913)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 53/202 (26%), Positives = 95/202 (47%)

Query:    14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
             +V P + GY ++L  +L  +P  KDS  ++ +  M++    +S  ++       E+  +G
Sbjct:    84 LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138

Query:    74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
               + + + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  + G        
Sbjct:   139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKE-GRRASHTAP 196

Query:   134 XXXXXXXXXXXELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
                        EL+ +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+
Sbjct:   197 QVLFSHREPPLELK-DTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHI 255

Query:   194 KCTKGFIQRRMRKRLESLVETL 215
             KC+K +I  RMR +    ++ L
Sbjct:   256 KCSKAYIHTRMRAKTSDFLKVL 277

GO:0042995 "cell projection" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

UNIPROTKB|O15144 ARPC2 "Actin-related protein 2/3 complex subunit 2" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 53/202 (26%), Positives = 95/202 (47%)

Query:    14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
             +V P + GY ++L  +L  +P  KDS  ++ +  M++    +S  ++       E+  +G
Sbjct:    84 LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138

Query:    74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
               + + + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  + G        
Sbjct:   139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKE-GRRASHTAP 196

Query:   134 XXXXXXXXXXXELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
                        EL+ +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+
Sbjct:   197 QVLFSHREPPLELK-DTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHI 255

Query:   194 KCTKGFIQRRMRKRLESLVETL 215
             KC+K +I  RMR +    ++ L
Sbjct:   256 KCSKAYIHTRMRAKTSDFLKVL 277

GO:0003779 "actin binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0035650 "AP-1 adaptor complex binding" evidence=IEA

GO:0071933 "Arp2/3 complex binding" evidence=IEA

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0006928 "cellular component movement" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

RGD|1305848 Arpc2 "actin related protein 2/3 complex, subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 53/202 (26%), Positives = 95/202 (47%)

Query:    14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
             +V P + GY ++L  +L  +P  KDS  ++ +  M++    +S  ++       E+  +G
Sbjct:    84 LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138

Query:    74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
               + + + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  + G        
Sbjct:   139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKE-GRRASHTAP 196

Query:   134 XXXXXXXXXXXELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
                        EL+ +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+
Sbjct:   197 QVLFSHREPPLELK-DTDAAVGDNIGYITFVLFPRHTNATARDNTINLIHTFRDYLHYHI 255

Query:   194 KCTKGFIQRRMRKRLESLVETL 215
             KC+K +I  RMR +    ++ L
Sbjct:   256 KCSKAYIHTRMRAKTSDFLKVL 277

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0005925 "focal adhesion" evidence=IEA;ISO

GO:0019894 "kinesin binding" evidence=IDA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA;ISO

GO:0031252 "cell leading edge" evidence=IEA;ISO

GO:0035650 "AP-1 adaptor complex binding" evidence=IDA

GO:0042995 "cell projection" evidence=IEA

GO:0071933 "Arp2/3 complex binding" evidence=IDA

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IEA;ISO

MGI|MGI:1923959 Arpc2 "actin related protein 2/3 complex, subunit 2" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 53/202 (26%), Positives = 95/202 (47%)

Query:    14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
             +V P + GY ++L  +L  +P  KDS  ++ +  M++    +S  ++       E+  +G
Sbjct:    84 LVNP-EPGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138

Query:    74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
               + + + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  + G        
Sbjct:   139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKE-GRRASHTAP 196

Query:   134 XXXXXXXXXXXELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
                        EL+ +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+
Sbjct:   197 QVLFSHREPPLELK-DTDAAVGDNIGYITFVLFPRHTNATARDNTINLIHTFRDYLHYHI 255

Query:   194 KCTKGFIQRRMRKRLESLVETL 215
             KC+K +I  RMR +    ++ L
Sbjct:   256 KCSKAYIHTRMRAKTSDFLKVL 277

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005885 "Arp2/3 protein complex" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IDA

GO:0031252 "cell leading edge" evidence=IDA

GO:0042995 "cell projection" evidence=IEA

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IMP

WB|WBGene00021170 arx-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 51/197 (25%), Positives = 92/197 (46%)

Query:    19 KEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPI 78
             ++G+ +TL  NL+ +P   D+  ++   S ++    +S  ++       ++  Q   K  
Sbjct:    89 EQGFNVTLEYNLADLPA--DTTDLVQAASALKRNCFASVFEKYF---EFQEAGQEGHKRA 143

Query:    79 KLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVXXXXX 138
              + Y   ET Y+  +  ++  +F   FK+  DVII   FLQE  + G             
Sbjct:   144 VINYRDDETMYIEAKADRVTVIFSTVFKDADDVIIGKVFLQEFRE-GRKASQTAPAVLYS 202

Query:   139 XXXXXXELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKG 198
                   EL+  P   +  N G++TF ++PRH   K  D T+  + +F  Y+ YH+KC+K 
Sbjct:   203 LGEPPLELKDLPEARVGDNVGYITFVLFPRHTNKKTKDNTIDLIHSFRDYLHYHIKCSKV 262

Query:   199 FIQRRMRKRLESLVETL 215
             ++  RMR +    ++ L
Sbjct:   263 YLHTRMRAKTTDFLKVL 279

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0010631 "epithelial cell migration" evidence=IMP

UNIPROTKB|F1P1K3 ARPC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 52/202 (25%), Positives = 96/202 (47%)

Query:    14 IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
             +V P + GY ++L  +L  +P  KD+  ++ +  M++    +S  ++  +    E+  +G
Sbjct:    92 LVNP-ESGYNVSLLYDLENLPADKDA--IVHQAGMLKRNCFASVFEK--YFKFQEEGKEG 146

Query:    74 MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
               + + + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  + G        
Sbjct:   147 EKRAV-IHYRDDETMYVEAKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKE-GRRASHTAP 204

Query:   134 XXXXXXXXXXXELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
                        EL+ +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+
Sbjct:   205 QVLFSHREPPLELK-DTDAAIGDNIGYITFVLFPRHTNAAARDNTINLIHTFRDYLHYHI 263

Query:   194 KCTKGFIQRRMRKRLESLVETL 215
             KC+K +I  RMR +    ++ L
Sbjct:   264 KCSKAYIHTRMRAKTSDFLKVL 285

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IEA

UNIPROTKB|F1SS01 ARPC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 51/195 (26%), Positives = 91/195 (46%)

Query:    21 GYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKL 80
             GY ++L  +L  +P  KDS  ++ +  M++    +S  ++       E+  +G  + + +
Sbjct:     1 GYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEGENRAV-I 55

Query:    81 VYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVXXXXXXX 140
              Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  + G               
Sbjct:    56 HYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKE-GRRASHTAPQVLFSHR 114

Query:   141 XXXXELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFI 200
                 EL+ +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+KC+K +I
Sbjct:   115 EPPLELK-DTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYI 173

Query:   201 QRRMRKRLESLVETL 215
               RMR +    ++ L
Sbjct:   174 HTRMRAKTSDFLKVL 188

GO:1900026 "positive regulation of substrate adhesion-dependent cell spreading" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|G4MTR0 MGG_04745 "ARP2/3 complex 34 kDa subunit" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 202 (76.2 bits), Expect = 3.9e-16, P = 3.9e-16
 Identities = 62/244 (25%), Positives = 115/244 (47%)

Query:    13 EIVQPAKEGYQLTLRLNLSKIPCGKDSMK-VISEISMVQATILSS----------QLKEM 61
             + V P + GY  ++ ++L  +P   ++ + ++ +IS+++   +++          +LKE 
Sbjct:    77 QYVVPPEPGYDFSVMVDLENLPSEPEAREELVKKISLLKRNAMAAPFEHAYAEHYKLKEE 136

Query:    62 LWTVNSEDTFQGMCKPIKLV---YHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFL 118
                  SE+  QG+ +  +++   Y   E  YV     ++  +F   F+E +D +    F+
Sbjct:   137 ASKYTSEEAPQGIREGGEVMAIHYREEEAIYVKASFDRVTVIFSTIFREETDRVYGKVFI 196

Query:   119 QELTDVGSSKKWAKVXXXXXXXXXXXELRGEP-FEDLSTNG-GFVTFDIYPRHIEGKRLD 176
             QE  D    +                EL+G P  +D  T   G+VTF ++PRH+  +R+ 
Sbjct:   197 QEFVDA-RRRAIQNAPQVLFRNDPPLELQGVPGVKDTGTGEIGYVTFVLFPRHLTPQRMP 255

Query:   177 KTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQG--PNLGEDEQ------TEK 228
               +  +  F  Y  YH+K +K +I  RMR+R    ++ L+   P+  E E+      T K
Sbjct:   256 DVISHIQTFRDYFHYHIKASKAYIHTRMRRRTADFLQVLRRARPDSEEKERKTASGRTFK 315

Query:   229 VQGN 232
             VQGN
Sbjct:   316 VQGN 319

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam04045	240	pfam04045, P34-Arc, Arp2/3 complex, 34 kD subunit	4e-41

>gnl|CDD|217859 pfam04045, P34-Arc, Arp2/3 complex, 34 kD subunit p34-Arc

 Score =  142 bits (359), Expect = 4e-41
 Identities = 53/204 (25%), Positives = 102/204 (50%), Gaps = 9/204 (4%)

Query: 17  PAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCK 76
             + GY ++L ++L ++P   +  ++I +I++++   +++  ++               +
Sbjct: 32  KPEPGYDVSLLIDLEELP-ADEREELIEKIALLKRNCMAAPFEKAFEKQAELAEEAEGEE 90

Query: 77  PIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAK--VP 134
              + Y   ET Y+     ++  +F   FK+ +D II   FLQE  D    ++ ++   P
Sbjct: 91  VAVIHYRDDETIYIKPSFDRVTVIFSTVFKDETDKIIGKVFLQEFVDA---RRRSRQTAP 147

Query: 135 PCCWAPIPPP-ELRGEPFE-DLSTNGGFVTFDIYPRHI-EGKRLDKTVWSLLNFYAYVKY 191
              ++   PP EL+G P       N G+VTF ++PRH+   KR D T+  +  F  Y+ Y
Sbjct: 148 QVLFSHKEPPLELQGVPGAAKAGDNVGYVTFVLFPRHLVTPKRRDNTISLIQTFRNYLHY 207

Query: 192 HVKCTKGFIQRRMRKRLESLVETL 215
           H+KC+K ++  RMR R+   ++ L
Sbjct: 208 HIKCSKAYMHSRMRNRVAEFLKVL 231

Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. This family represents the p34-Arc subunit. Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PF04045	241	P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; In	100.0
KOG2826	301	consensus Actin-related protein Arp2/3 complex, su	100.0
PTZ00278	174	ARP2/3 complex subunit; Provisional	93.55
PF05856	170	ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); Inte	92.65

>PF04045 P34-Arc: Arp2/3 complex, 34 kD subunit p34-Arc; InterPro: IPR007188 Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells

Probab=100.00  E-value=1.1e-98  Score=689.76  Aligned_cols=219  Identities=32%  Similarity=0.602  Sum_probs=185.3

Q ss_pred             hhHHHhhhhcccccCCCCCCccEEEEEecCCCCCCCcc-hHHHHHHHhHHHHHhHHHHHHHHHhhcCccccCCCccceEE
Q 022468            2 EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDS-MKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKL   80 (296)
Q Consensus         2 E~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~-~~li~~is~LKrn~lAApFe~af~~~~~~~~~~~~~~~~~I   80 (296)
                      |+|+++||++++  ++||+|||+||.|||++||+++++ +++|+++|+||||||||||+++|+.++++++.+.+.++++|
T Consensus        19 e~l~~~Yg~~~~--~~pe~Gy~~tL~idl~~lp~~~~~~~~~i~~is~LKr~~~aapF~~~f~~~~~~~~~~~~~~~~~i   96 (241)
T PF04045_consen   19 EYLKREYGSYVQ--TPPESGYDVTLVIDLEKLPADEEDREELIKKISLLKRNCLAAPFEKAFDEQASLSEEPPGEKPAVI   96 (241)
T ss_dssp             HHHHHHCCCCE---ES--TTSSEEEEEETTS-----SSHHHHHHHHHTHHHHHCCHHHHHHHCHHHCT-----TTT-EEE
T ss_pred             HHHHHhcccccc--CCCCCCccEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCceEEE
Confidence            789999999985  689999999999999999987666 88999999999999999999999998888776667889999


Q ss_pred             eccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCC-CCCCCCCCCCCCC-CCCCc
Q 022468           81 VYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAP-IPPPELRGEPFED-LSTNG  158 (296)
Q Consensus        81 ~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~-ePPlELr~~~~~~-~~~n~  158 (296)
                      |||+||+|||+|++|||||||||+|+|+||+||||||||||+||||+++ ++||||+||+ +||+||+|+++++ .++|+
T Consensus        97 ~YR~~E~iyi~~~~DrVTVIFst~F~D~~D~vigkvFLQEFvdaRr~~~-~~APqvlfS~~~PPlEl~~~~~~~~~~~n~  175 (241)
T PF04045_consen   97 HYRDDETIYIKPSKDRVTVIFSTRFKDEDDRVIGKVFLQEFVDARRRSR-QTAPQVLFSHREPPLELRGVPGARNLGDNV  175 (241)
T ss_dssp             EECTTEEEEEEEESSEEEEEEEEE-SSCCHHHHHHHHHHHHHTGGGT---TTS-EEEEECSS--CGGTT-TT----STTE
T ss_pred             EeCCCceEEEEeCCCEEEEEEEEEEcCCCCeEeeHHHHHHHHHhccccC-CCCCceeccCCCCChhHcCCCCccccCCCe
Confidence            9999999999999999999999999999999999999999999999965 9999999997 9999999998887 89999


Q ss_pred             eEEEEEecCCCC-CCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhcCCCCCCc
Q 022468          159 GFVTFDIYPRHI-EGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGED  223 (296)
Q Consensus       159 GyVTFvLFpRH~-~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkvLNrAkpe~~  223 (296)
                      |||||||||||+ +++++++|||+|++|||||||||||||||||||||+||++|||||||||||.|
T Consensus       176 gyvTFvLfprH~~~~~~~~~ti~~l~~FR~YlhYHIKcsKaymHsRMR~Rv~~~lkvLnrAkpe~~  241 (241)
T PF04045_consen  176 GYVTFVLFPRHFVTPERRDNTIWHLQTFRNYLHYHIKCSKAYMHSRMRKRVESFLKVLNRAKPEEE  241 (241)
T ss_dssp             EEEEEEEEHHHGHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS----
T ss_pred             EEEEEEEeccccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcCcCCC
Confidence            999999999995 58899999999999999999999999999999999999999999999999954

The human complex consists of seven subunits, which include the actin related Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc []. This family represents the p34-Arc subunit.; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 2P9L_D 2P9I_D 2P9U_D 3DXM_D 2P9N_D 1TYQ_D 3DXK_D 1K8K_D 2P9S_D 1U2V_D ....

>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]

Probab=100.00  E-value=3.5e-96  Score=671.19  Aligned_cols=221  Identities=24%  Similarity=0.468  Sum_probs=210.0

Q ss_pred             hhHHHhhhhcccccCCCCCCccEEEEEecCCCCCCCcchHHHHHHHhHHHHHhHHHHHHHHHhhcCccccCCCccceEEe
Q 022468            2 EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKLV   81 (296)
Q Consensus         2 E~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~li~~is~LKrn~lAApFe~af~~~~~~~~~~~~~~~~~I~   81 (296)
                      ++||++||.++   ..||+|||+||+|||++||++++  ++++.+++|||||+||+|+++|+   .|+++.++++.++||
T Consensus        74 ~LLk~~yg~~~---~epE~Gyn~slli~L~~lpa~~~--~l~~~i~~lkrn~~as~F~k~f~---~Q~~~~e~~~r~~I~  145 (301)
T KOG2826|consen   74 DLLKRVYGSYL---SEPEPGYNVSLLIDLAELPADKE--SLAKTISLLKRNCFASVFEKYFQ---FQEAGVEGEKRAVIH  145 (301)
T ss_pred             HHHHHHhcccc---CCCCCCccEEEEEEHHhCchhHH--HHHHHHHHhhhhHHHHHHHHHHh---cchhhhhhhheeEEE
Confidence            78999999987   67999999999999999999975  49999999999999999997664   577777788999999


Q ss_pred             ccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCC-CCCCCCCCCCCCCCCCCceE
Q 022468           82 YHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAP-IPPPELRGEPFEDLSTNGGF  160 (296)
Q Consensus        82 YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~-ePPlELr~~~~~~~~~n~Gy  160 (296)
                      |||||+|||+|++|||||||||+|+|+||+||||||||||+||||.  +|+|||||||+ ||||||++++++++|+|+||
T Consensus       146 YRddEti~i~~k~DRVTvvFsTiF~de~D~I~GKVFlQEf~e~Rra--~qtAPqVLfShrePPLElkd~~~~~vgdn~gy  223 (301)
T KOG2826|consen  146 YRDDETIYIEPKNDRVTVVFSTIFRDEDDVIIGKVFLQEFVEGRRA--SQTAPQVLFSHREPPLELKDLYDARVGDNIGY  223 (301)
T ss_pred             eccCceEEEecCCCeEEEEEEEeeccCCceeehHHHHHHHHHHHhh--hccccHHHhhcCCCCchhhhcCCcccccccce
Confidence            9999999999999999999999999999999999999999999995  79999999995 99999999998999999999


Q ss_pred             EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhcCCCCCCcc-hhhhhcCC
Q 022468          161 VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDE-QTEKVQGN  232 (296)
Q Consensus       161 VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkvLNrAkpe~~~-~~k~~~~~  232 (296)
                      |||||||||++++.+++||++|++|||||||||||||||||||||+||++|||||||||||++. ++||..||
T Consensus       224 iTFVLFpRH~~k~~rd~tI~~i~~FRdylHyHIKcSKaYmHsRMR~k~~dFlKVLNRArpd~~~~erkT~tGr  296 (301)
T KOG2826|consen  224 ITFVLFPRHTNKETRDNTINLIHLFRDYLHYHIKCSKAYMHSRMRAKTSDFLKVLNRARPDVEDEERKTFTGR  296 (301)
T ss_pred             EEEEEecccCCchhccchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhHHHHHHHHhhcCCCccchhhccccCc
Confidence            9999999999999999999999999999999999999999999999999999999999999666 88999997

>PTZ00278 ARP2/3 complex subunit; Provisional

Probab=93.55  E-value=0.15  Score=46.01  Aligned_cols=121  Identities=19%  Similarity=0.245  Sum_probs=98.2

Q ss_pred             ccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 022468           75 CKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDL  154 (296)
Q Consensus        75 ~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~ePPlELr~~~~~~~  154 (296)
                      -.|+.|...++|..+|+++-+.|-|.|.+.-.|+-+.++++-|+. |.-.|-     .+=+||--         .|-   
T Consensus        52 l~pl~I~Rne~E~clIE~SiNSvRiSi~ikqaDeie~iL~~kf~~-Fl~~RA-----e~F~ILRr---------kPv---  113 (174)
T PTZ00278         52 LNPIYIVRSEKEKCLIEPSINSVRISFSFKKSDELDVIIARKFVS-FLAQRA-----EQFVILRR---------KPI---  113 (174)
T ss_pred             cCcEEEEEcCCceEEEEcccceEEEEEEehhhChHHHHHHHHHHH-HHHhhh-----hceeEEee---------cCc---
Confidence            467999999999999999999999999999999999999999986 444442     12222222         111   


Q ss_pred             CCCceE-EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhc
Q 022468          155 STNGGF-VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQ  216 (296)
Q Consensus       155 ~~n~Gy-VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkvLN  216 (296)
                         -|| |||.+.--|++.--..+-|+.|.+|=.=+---|.--|-.+.+|=|.=.++|++-++
T Consensus       114 ---~GYDISFLItn~H~e~m~k~kLidFIi~FmeeiDkeIsemKL~~NaRaR~~A~~fl~~f~  173 (174)
T PTZ00278        114 ---PGYDISFLITNFHTENMFKHKLIDFIIDFMEDIDKDISDMKLNVNTRARIAAPEFFKALA  173 (174)
T ss_pred             ---CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence               144 78999999998766789999999999988889999999999999999999998765

>PF05856 ARPC4: ARP2/3 complex 20 kDa subunit (ARPC4); InterPro: IPR008384 This family consists of several eukaryotic ARP2/3 complex 20 kDa subunit (P20-ARC) proteins

Probab=92.65  E-value=0.38  Score=43.33  Aligned_cols=118  Identities=14%  Similarity=0.173  Sum_probs=82.6

Q ss_pred             ccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 022468           75 CKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDL  154 (296)
Q Consensus        75 ~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~ePPlELr~~~~~~~  154 (296)
                      ..|+.|...+.|..+|+++-+.|-|.+.+...|+-+.++.+-|+. |.-.|-.     +=+||--  -|-+         
T Consensus        50 l~pl~I~Rne~E~clIE~SiNSvRvSi~ikq~Deie~iL~~kf~r-Fl~~RAe-----~F~ILRR--kPv~---------  112 (170)
T PF05856_consen   50 LNPLVISRNEKEKCLIEPSINSVRVSIKIKQADEIERILCHKFTR-FLMQRAE-----NFFILRR--KPVE---------  112 (170)
T ss_dssp             ---EEEESSSS-EEEEEEBSSEEEEEEE----SCHHHHHHHHHHH-HHHHCTT-----TSTTB-S--S--T---------
T ss_pred             cCceeeccCCCceEEEEcccceEEEEEEecccChHHHHHHHHHHH-HHHhhhh-----hheeeee--cCcC---------
Confidence            468999999999999999999999999999999999999999976 4444422     1122222  1111         


Q ss_pred             CCCceE-EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 022468          155 STNGGF-VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVE  213 (296)
Q Consensus       155 ~~n~Gy-VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lk  213 (296)
                          || |||.+.-.|++.--..+-|+.|.+|=.=+---|.--|-.+-+|=|.=.++|++
T Consensus       113 ----GYDISFLIt~~h~e~m~k~kLidFIi~FmeeiDkeIs~mKl~~naRaR~~A~~fl~  168 (170)
T PF05856_consen  113 ----GYDISFLITNFHTEQMGKHKLIDFIITFMEEIDKEISEMKLSLNARARIVAEEFLK  168 (170)
T ss_dssp             ----TSSEEEEEECCHHHHSTHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred             ----CCceeeeeechhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence                44 89999999998766789999999997777666777777777777766666653

The Arp2/3 protein complex has been implicated in the control of actin polymerisation in cells. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3 it has been suggested that the complex promotes actin assembly in lamellipodia and may participate in lamellipodial protrusion [].; GO: 0030041 actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_K 1K8K_F 1U2V_F 2P9S_F 2P9U_F 2P9N_F 3DXK_F 1TYQ_F 3RSE_F 2P9I_F ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
1k8k_D	300	Crystal Structure Of Arp23 COMPLEX Length = 300		9e-17
3dwl_D	317	Crystal Structure Of Fission Yeast Arp2/3 Complex L		7e-09

>pdb|1K8K|D Chain D, Crystal Structure Of Arp23 COMPLEX Length = 300

Iteration: 1
 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 8/203 (3%)
Query: 14  IVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQG 73
           +V P + GY ++L  +L  +P  KDS  ++ +  M++    +S  ++       E+  +G
Sbjct: 84  LVNP-ESGYNVSLLYDLENLPASKDS--IVHQAGMLKRNCFASVFEKYFQF--QEEGKEG 138
Query: 74  MCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV 133
             + + + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  + G        
Sbjct: 139 ENRAV-IHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKE-GRRASHTAP 196
Query: 134 XXXXXXXXXXXELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHV 193
                      EL+ +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+
Sbjct: 197 QVLFSHREPPLELK-DTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHI 255
Query: 194 KCTKGFIQRRMRKRLESLVETLQ 216
           KC+K +I  RMR +    ++ L 
Sbjct: 256 KCSKAYIHTRMRAKTSDFLKVLN 278

>pdb|3DWL|D Chain D, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 317

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 104/245 (42%), Gaps = 39/245 (15%)
Query: 2   EMVKAISLDVVE-----IVQPAKEGYQLTLRLNLSKIPCGKDSMKVIS-EISMVQATILS 55
           E+V   +LD+++      V   + GY  ++ ++L ++P   +  + ++  ISM++  +L+
Sbjct: 61  ELVNYGTLDLLKQIYGAYVHEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLA 120
Query: 56  SQLK-----------------EMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIA 98
           +                    E    ++ + T Q +   + + Y   ET  +  +  ++ 
Sbjct: 121 APFHRAFTKQAELADLARKDPENAPMLDKQATSQEL---MAIHYRDEETIVLWPEHDRVT 177
Query: 99  AVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVXXXXXXXXXXXELRGEPFEDLSTNG 158
            VF  +F+E +D I    FLQE  D   +++   +             R  P E     G
Sbjct: 178 VVFSTKFREETDRIFGKVFLQEFVD---ARRRPAIQTAPQVLFS---YRDPPLEIRDIQG 231
Query: 159 -------GFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESL 211
                  GFVTF ++ RH   +  +  +  +  F   + +H+K +K ++ +RMRKR+   
Sbjct: 232 IQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADF 291
Query: 212 VETLQ 216
            + L 
Sbjct: 292 QKVLN 296

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
3dwl_D	317	Actin-related protein 2/3 complex subunit 2; prope	3e-61
1k8k_D	300	P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-	3e-59

>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 317

 Score =  196 bits (498), Expect = 3e-61
 Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 16/235 (6%)

Query: 13  EIVQPAKEGYQLTLRLNLSKIPC-GKDSMKVISEISMVQATILSSQLKEML--------- 62
             V   + GY  ++ ++L ++P   ++  ++   ISM++  +L++               
Sbjct: 77  AYVHEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAAPFHRAFTKQAELADL 136

Query: 63  -----WTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAF 117
                      D      + + + Y   ET  +  +  ++  VF  +F+E +D I    F
Sbjct: 137 ARKDPENAPMLDKQATSQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVF 196

Query: 118 LQELTDVGSSKKWAKVPPCCWAPIPPP-ELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLD 176
           LQE  D          P   ++   PP E+R         + GFVTF ++ RH   +  +
Sbjct: 197 LQEFVDARRRPAIQTAPQVLFSYRDPPLEIRDIQGIQKGDDFGFVTFVLFERHFTPQNRE 256

Query: 177 KTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEKVQG 231
             +  +  F   + +H+K +K ++ +RMRKR+    + L       + + +   G
Sbjct: 257 DCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLNRAKPDVELERKTATG 311

>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D Length = 300

 Score =  190 bits (484), Expect = 3e-59
 Identities = 50/216 (23%), Positives = 96/216 (44%), Gaps = 7/216 (3%)

Query: 13  EIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQ 72
             +   + GY ++L  +L  +P  KD   ++ +  M++    +S  ++       ++  +
Sbjct: 82  SYLVNPESGYNVSLLYDLENLPASKD--SIVHQAGMLKRNCFASVFEKYF---QFQEEGK 136

Query: 73  GMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAK 132
                  + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  +   +   A 
Sbjct: 137 EGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRASHTA- 195

Query: 133 VPPCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYH 192
            P   ++   PP    +    +  N G++TF ++PRH      D T+  +  F  Y+ YH
Sbjct: 196 -PQVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYH 254

Query: 193 VKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQTEK 228
           +KC+K +I  RMR +    ++ L       +++  K
Sbjct: 255 IKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMK 290

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
3dwl_D	317	Actin-related protein 2/3 complex subunit 2; prope	100.0
1k8k_D	300	P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-	100.0
3dwl_F	168	Actin-related protein 2/3 complex subunit 4; prope	94.81
1k8k_F	168	P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-	93.67

>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.1e-101  Score=726.72  Aligned_cols=228  Identities=21%  Similarity=0.398  Sum_probs=193.0

Q ss_pred             hhHHHhhhhcccccCCCCCCccEEEEEecCCCCCCCcc-hHHHHHHHhHHHHHhHHHHHHHHHhhcCcc--------cc-
Q 022468            2 EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDS-MKVISEISMVQATILSSQLKEMLWTVNSED--------TF-   71 (296)
Q Consensus         2 E~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~-~~li~~is~LKrn~lAApFe~af~~~~~~~--------~~-   71 (296)
                      |+|+++||+|+   .+||+||||||.|||++||+++|+ +++|+++|+||||||||||+++|+.++..+        .+ 
T Consensus        69 e~Lk~~Yg~~~---~~pe~GY~~sL~idL~~lp~~~e~~~~li~~is~LKrn~~aapFe~~f~~~~~L~~~~~~~~~~~~  145 (317)
T 3dwl_D           69 DLLKQIYGAYV---HEPEMGYNFSILIDLQQLPATDEEKEQLAMSISMLKRNVLAAPFHRAFTKQAELADLARKDPENAP  145 (317)
T ss_dssp             HHHHHHSTTTE---ECCCTTSSEEECCCTTSCCC-CCSHHHHHHHHHTHHHHHTSHHHHHHHTHHHHCC----------C
T ss_pred             HHHHHHhcccc---CCCCCCceEEEEEEhhhCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhccccccccc
Confidence            78999999997   579999999999999999998877 889999999999999999999998543210        11 


Q ss_pred             -----CCCccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccC-CCCCCC
Q 022468           72 -----QGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWA-PIPPPE  145 (296)
Q Consensus        72 -----~~~~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS-~ePPlE  145 (296)
                           .++.++++||||+||+|||+|++|||||||||+|+|+||+||||||||||+||||++++++||||+|| ++||+|
T Consensus       146 ~~~~~~~~~~~~~I~YR~~E~iyI~p~~DrVTVIFst~FkDe~D~v~gkvFLQEFvdaRr~~~~~~APqvlfs~~ePPlE  225 (317)
T 3dwl_D          146 MLDKQATSQELMAIHYRDEETIVLWPEHDRVTVVFSTKFREETDRIFGKVFLQEFVDARRRPAIQTAPQVLFSYRDPPLE  225 (317)
T ss_dssp             CCCHHHHTTTCEEECCSSSCCEEEEECSSEEEEEEEECCSSSSHHHHHHHHHHHHHCCCC-----CCCEEEECSSSCCSC
T ss_pred             cccccccCCCeeEEecCCCceEEEEecCCeEEEEEEEEecCCCceeehHHHHHHHHHHhhccccCCCCcccccCCCCChH
Confidence                 12568999999999999999999999999999999999999999999999999999889999999999 799999


Q ss_pred             CCCCCCCCCCCCceEEEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhcCCCCCCcch
Q 022468          146 LRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGEDEQ  225 (296)
Q Consensus       146 Lr~~~~~~~~~n~GyVTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkvLNrAkpe~~~~  225 (296)
                      |+|+++++.++|+|||||||||||++++.+++|||+|++|||||||||||||||||||||+||++|||||||||||.++|
T Consensus       226 L~~~~~~~~~~n~gyVTFvLFpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~rv~~~l~vLnrAkpe~~~e  305 (317)
T 3dwl_D          226 IRDIQGIQKGDDFGFVTFVLFERHFTPQNREDCISHIQVFRNTLHFHIKASKAYMHQRMRKRVADFQKVLNRAKPDVELE  305 (317)
T ss_dssp             CCSCC-------CEEEEEEEEGGGGCTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCC--
T ss_pred             HhCCCccccCCCeeEEEEEechHhcCChhHHHHHHHHHHHHHHhhhhheecHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            99999988999999999999999999988899999999999999999999999999999999999999999999998889


Q ss_pred             hhhhcCC
Q 022468          226 TEKVQGN  232 (296)
Q Consensus       226 ~k~~~~~  232 (296)
                      +||++||
T Consensus       306 kKT~sGr  312 (317)
T 3dwl_D          306 RKTATGR  312 (317)
T ss_dssp             -------
T ss_pred             ccccCCc
Confidence            9999997

>1k8k_D P34, ARP2/3 complex 34 kDa subunit, P34-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 d.198.2.1 PDB: 1tyq_D* 1u2v_D* 2p9i_D* 2p9k_D* 2p9l_D 2p9n_D* 2p9p_D* 2p9s_D* 2p9u_D* 3dxk_D* 3dxm_D* 3rse_D

Probab=100.00  E-value=3.3e-99  Score=709.59  Aligned_cols=220  Identities=24%  Similarity=0.490  Sum_probs=196.8

Q ss_pred             hhHHHhhhhcccccCCCCCCccEEEEEecCCCCCCCcchHHHHHHHhHHHHHhHHHHHHHHHhhcCccccCCCccceEEe
Q 022468            2 EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATILSSQLKEMLWTVNSEDTFQGMCKPIKLV   81 (296)
Q Consensus         2 E~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~li~~is~LKrn~lAApFe~af~~~~~~~~~~~~~~~~~I~   81 (296)
                      |+|+++||+++   .+||+|||+||.|||++||+++  +++|+++|+||||||||||+++|+ ++++  +++++.+++||
T Consensus        74 e~Lk~~Yg~~v---~~pe~Gy~~tL~idl~~lp~~~--~~li~kia~LKrn~laapF~~~F~-~~~~--~~~~~~~~~I~  145 (300)
T 1k8k_D           74 ELLKRVYGSYL---VNPESGYNVSLLYDLENLPASK--DSIVHQAGMLKRNCFASVFEKYFQ-FQEE--GKEGENRAVIH  145 (300)
T ss_dssp             HHHHHHHGGGE---ESCCTTCSEEEEEETTSCCSCH--HHHHHHHHTHHHHHHHHHHHHHHH-HHHH--TCCSCCCEEEE
T ss_pred             HHHHHHccccc---cCCCCCccEEEEEEHHHCCcCH--HHHHHHHHHHHHHHHHHHHHHHHH-HHhc--ccCCCceEEee
Confidence            78999999997   3799999999999999999985  459999999999999999999999 4433  33445569999


Q ss_pred             ccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCC-CCCCCCCCCCCCCCCCCceE
Q 022468           82 YHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAP-IPPPELRGEPFEDLSTNGGF  160 (296)
Q Consensus        82 YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~-ePPlELr~~~~~~~~~n~Gy  160 (296)
                      ||++|+|||+|++|||||||||+|+|+||+||||||||||+||||+  +++||||+||+ +||+||+|++ ...++|+||
T Consensus       146 YR~~E~iyi~~~~DrVTViFst~F~D~~D~v~gkvFlQEfvdaRr~--~~~APqvlfs~~~PPlEL~~~~-~~~~~n~gy  222 (300)
T 1k8k_D          146 YRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTAPQVLFSHREPPLELKDTD-AAVGDNIGY  222 (300)
T ss_dssp             EETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTSCEEEEEESSCCGGGTTTT-CCCSTTEEE
T ss_pred             cCCCccEEEEeCCCeEEEEEEEeecCcchhhHHHHHHHHHHHHHhc--cCCCCceecCCCCCChHHcCCc-cccCCCeEE
Confidence            9999999999999999999999999999999999999999999998  89999999997 9999999998 566999999


Q ss_pred             EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHHhcCCCCCCc-chhhhhcCC
Q 022468          161 VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVETLQGPNLGED-EQTEKVQGN  232 (296)
Q Consensus       161 VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkvLNrAkpe~~-~~~k~~~~~  232 (296)
                      |||||||||++++++++|||+||+|||||||||||||||||||||+||++|||||||||||.+ +++||++||
T Consensus       223 VTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~flkvLnRAkpe~~~~ekkT~sGr  295 (300)
T 1k8k_D          223 ITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFLKVLNRARPDAEKKEMKTITGK  295 (300)
T ss_dssp             EEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC------------
T ss_pred             EEEEeccccCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeccCc
Confidence            999999999999999999999999999999999999999999999999999999999999954 689999997

>3dwl_F Actin-related protein 2/3 complex subunit 4; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=94.81  E-value=0.12  Score=44.97  Aligned_cols=119  Identities=18%  Similarity=0.209  Sum_probs=96.4

Q ss_pred             ccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 022468           75 CKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDL  154 (296)
Q Consensus        75 ~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~ePPlELr~~~~~~~  154 (296)
                      -.|+.|...+.|..+|+++-+.|-|.|.+.-.|+-+.++.+-|+. |.-.|-     .+=+||-.         .|-.  
T Consensus        48 l~p~~I~Rne~E~clIE~SiNSvRvSi~ikqaDeie~iL~~kf~r-Fl~~RA-----e~f~ILRr---------kPv~--  110 (168)
T 3dwl_F           48 LKPLVVSRNEQEQCLIESSVNSVRFSIRIKQVDEIERILVRKFMQ-FLMGRA-----ESFFILRR---------KPVQ--  110 (168)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSSHHHHHHHHHHH-HHGGGT-----TTSTTBCS---------SCCT--
T ss_pred             cCceEEeecCCceEEEEcccceEEEEEEehhhchHHHHHHHHHHH-HHHhcc-----cceEEeee---------CCcC--
Confidence            468999999999999999999999999999999999999999976 443432     22233332         1111  


Q ss_pred             CCCceE-EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHHH
Q 022468          155 STNGGF-VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVET  214 (296)
Q Consensus       155 ~~n~Gy-VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lkv  214 (296)
                          || |||.+.-.|++.--..+-|+.|.+|=.-+---|.--|-.+.+|=|.=.++|++-
T Consensus       111 ----GYDISFLItn~H~e~m~k~kLvdFIi~FmeevdkeIsemKl~lnaRaR~~A~~fl~~  167 (168)
T 3dwl_F          111 ----GYDISFLITNYHTEEMLKHKLVDFIIEFMEEVDAEISEMKLFLNGRARLVAETYLSC  167 (168)
T ss_dssp             ----TCSEEEEEETTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             ----CcceeeeehHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                33 899999999986666899999999999999999999999999999888888864

>1k8k_F P20, ARP2/3 complex 20 kDa subunit, P20-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: d.198.2.1 PDB: 1tyq_F* 1u2v_F* 2p9i_F* 2p9k_F* 2p9l_F 2p9n_F* 2p9p_F* 2p9s_F* 2p9u_F* 3dxk_F* 3dxm_F* 3rse_F

Probab=93.67  E-value=0.15  Score=44.50  Aligned_cols=118  Identities=15%  Similarity=0.206  Sum_probs=94.6

Q ss_pred             ccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 022468           75 CKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDL  154 (296)
Q Consensus        75 ~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~ePPlELr~~~~~~~  154 (296)
                      -.|+.|...+.|..+|+++-+.|-|.+.+-..|+-+.++.+-|+. |.-.|-     .+=+||-.  -|-+         
T Consensus        48 l~pl~i~Rne~E~clIE~SiNSvRvSi~ikq~DeiE~iL~~kf~r-Fl~~RA-----e~f~ILRr--kPv~---------  110 (168)
T 1k8k_F           48 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRA-----ENFFILRR--KPVE---------  110 (168)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTT-----TTSTTBCS--SCCT---------
T ss_pred             ccceEEEecCCceEEEEcccceEEEEEEEcccChHHHHHHHHHHH-HHHhcc-----cceEEeee--CCcC---------
Confidence            468999999999999999999999999999999999999999976 444442     22333333  1111         


Q ss_pred             CCCceE-EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 022468          155 STNGGF-VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVE  213 (296)
Q Consensus       155 ~~n~Gy-VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lk  213 (296)
                          || |||.+.--|++.--..+-|+.|.+|=.-+---|.--|-.+.+|=|.=.++|++
T Consensus       111 ----GYDISFLItn~h~e~m~k~kLidFIi~FmeeiDkeIsemKl~~NaRaR~~A~~fl~  166 (168)
T 1k8k_F          111 ----GYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK  166 (168)
T ss_dssp             ----TCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----CccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence                33 89999999998766789999999999888888888888888888887777775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1k8kd2	164	d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow	4e-53
d1k8kd1	120	d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (B	3e-04

>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 164

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  168 bits (428), Expect = 4e-53
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 75  CKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVP 134
                + Y   ET YV  +  ++  VF   FK+  DV+I   F+QE  +    +     P
Sbjct: 19  ENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEG--RRASHTAP 76

Query: 135 PCCWAPIPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVK 194
              ++   PP    +    +  N G++TF ++PRH      D T+  +  F  Y+ YH+K
Sbjct: 77  QVLFSHREPPLELKDTDAAVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIK 136

Query: 195 CTKGFIQRRMRKRLESLVETLQ 216
           C+K +I  RMR +    ++ L 
Sbjct: 137 CSKAYIHTRMRAKTSDFLKVLN 158

>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 120

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 13  EIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMV 49
             +   + GY ++L  +L  +P  KD   ++ +  M+
Sbjct: 82  SYLVNPESGYNVSLLYDLENLPASKD--SIVHQAGML 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1k8kd2	164	ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9	100.0
d1k8kd1	120	ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9	99.45
d1k8kf_	167	ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9	93.82

>d1k8kd2 d.198.2.1 (D:121-284) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-81  Score=543.43  Aligned_cols=162  Identities=26%  Similarity=0.489  Sum_probs=152.4

Q ss_pred             hHHHHHHHHHhhcCccccCCCccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCC
Q 022468           54 LSSQLKEMLWTVNSEDTFQGMCKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKV  133 (296)
Q Consensus        54 lAApFe~af~~~~~~~~~~~~~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~A  133 (296)
                      |||+|+++|+..   +.+++++++++|||||||+|||+|++|||||||||+|+|+||+||||||||||+||||+  +++|
T Consensus         1 Fa~~Fek~f~~q---~~~~~g~~~~~i~YR~~E~~yv~~~~drvTViFs~~F~d~~D~v~gkvFlQEf~daRr~--~~~A   75 (164)
T d1k8kd2           1 FASVFEKYFQFQ---EEGKEGENRAVIHYRDDETMYVESKKDRVTVVFSTVFKDDDDVVIGKVFMQEFKEGRRA--SHTA   75 (164)
T ss_dssp             HHHHHHHHHHHH---HHTCCSCCCEEEEEETTEEEEEEECSSCEEEEEEEECSSHHHHHHHHHHHHHHHTGGGT--CTTS
T ss_pred             CchHHHHHHHHH---HhcccccceeEEecCCCccEEEEeCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHhcc--cCCC
Confidence            689999988744   33445678999999999999999999999999999999999999999999999999975  8999


Q ss_pred             CCcccCC-CCCCCCCCCCCCCCCCCceEEEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHH
Q 022468          134 PPCCWAP-IPPPELRGEPFEDLSTNGGFVTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLV  212 (296)
Q Consensus       134 PqVlfS~-ePPlELr~~~~~~~~~n~GyVTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~l  212 (296)
                      |||+||+ +||+||+|+++ .+++|+|||||||||||++++++++|||+|++|||||||||||||||||+|||+||++||
T Consensus        76 Pqvl~s~~~PPlel~~~~~-~~~~n~gyvTFvLfpRH~~~~~~~~ti~~i~~FR~YlhYHIKcSKaymHsRMR~Rv~~fl  154 (164)
T d1k8kd2          76 PQVLFSHREPPLELKDTDA-AVGDNIGYITFVLFPRHTNASARDNTINLIHTFRDYLHYHIKCSKAYIHTRMRAKTSDFL  154 (164)
T ss_dssp             CEEEEEESSCCGGGTTTTC-CCSTTEEEEEEEECHHHHSTTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCCCchHhcCCCc-ccCCCcceEEEEecccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999995 99999999865 689999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCC
Q 022468          213 ETLQGPNLG  221 (296)
Q Consensus       213 kvLNrAkpe  221 (296)
                      |||||||||
T Consensus       155 kvLnrAkpe  163 (164)
T d1k8kd2         155 KVLNRARPD  163 (164)
T ss_dssp             HHHHTTSCC
T ss_pred             HHHHhcCCC
Confidence            999999998

>d1k8kd1 d.198.2.1 (D:1-120) ARPC2 (34 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC2 (34 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.45  E-value=1.7e-14  Score=118.20  Aligned_cols=47  Identities=21%  Similarity=0.487  Sum_probs=43.6

Q ss_pred             hhHHHhhhhcccccCCCCCCccEEEEEecCCCCCCCcchHHHHHHHhHHHHH
Q 022468            2 EMVKAISLDVVEIVQPAKEGYQLTLRLNLSKIPCGKDSMKVISEISMVQATI   53 (296)
Q Consensus         2 E~Lk~~Yg~~~~i~~~pE~GYdvTL~iDL~~lp~~~e~~~li~~is~LKrn~   53 (296)
                      |+|+++||+|+   .+||+|||+||.+||++||+++|  ++|+++|+|||||
T Consensus        74 e~L~~~Yg~~~---~~pE~GY~~sl~~dL~~lp~~~e--~li~~islLKRnc  120 (120)
T d1k8kd1          74 ELLKRVYGSYL---VNPESGYNVSLLYDLENLPASKD--SIVHQAGMLKRNC  120 (120)
T ss_dssp             HHHHHHHGGGE---ESCCTTCSEEEEEETTSCCSCHH--HHHHHHHTHHHHH
T ss_pred             HHHHHHhhccc---CCCCCCceEEEEEEHHhCCCCHH--HHHHHHHhhccCC
Confidence            78999999997   57999999999999999998864  5999999999999

>d1k8kf_ d.198.2.1 (F:) ARPC4 (20 kDa subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Secretion chaperone-like
superfamily: Arp2/3 complex subunits
family: Arp2/3 complex subunits
domain: ARPC4 (20 kDa subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.82  E-value=0.064  Score=44.72  Aligned_cols=118  Identities=14%  Similarity=0.202  Sum_probs=93.7

Q ss_pred             ccceEEeccCCceEEEeecCCeEEEEeeeeeccCchhHHHHHHHHHHHHhccCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 022468           75 CKPIKLVYHPRETFYVIKQPLKIAAVFPMRFKEHSDVIIATAFLQELTDVGSSKKWAKVPPCCWAPIPPPELRGEPFEDL  154 (296)
Q Consensus        75 ~~~~~I~YR~dE~iyI~~~~DRVTVIFst~FkD~~D~vigkvFLQEFvDaRr~~~i~~APqVlfS~ePPlELr~~~~~~~  154 (296)
                      ..|+.|...++|..+|+++-+.|-|.+.....|+-+.++.+-|+. |.-.|-.     +=++|--         .|-   
T Consensus        47 l~pl~i~R~e~E~clIE~SiNSvRiSi~ikq~Deie~iL~~kf~~-Fl~~rae-----~F~ILRr---------kPi---  108 (167)
T d1k8kf_          47 LQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMR-FMMMRAE-----NFFILRR---------KPV---  108 (167)
T ss_dssp             CCCEEEESSSSCEEEEEEBSSEEEEEEECCCCSHHHHHHHHHHHH-HHHHTTT-----TSTTBCS---------SCC---
T ss_pred             cccEEEEEcCCceEEEEcccceEEEEEEecccchHHHHHHHHHHH-HHHHhhh-----hceeeee---------cCc---
Confidence            468999999999999999999999999999999999999999976 5545422     2223322         111   


Q ss_pred             CCCceE-EEEEecCCCCCCcchhhhHHHHhhhccccceeeeccchhhHHHHHHhHHHHHH
Q 022468          155 STNGGF-VTFDIYPRHIEGKRLDKTVWSLLNFYAYVKYHVKCTKGFIQRRMRKRLESLVE  213 (296)
Q Consensus       155 ~~n~Gy-VTFvLFpRH~~~~~~~~TI~~L~~FR~YlHYHIKcSKaYmHsRMR~Rv~~~lk  213 (296)
                         -|| |||.+.--|++.-...+-|+.|.+|=.=+---|.--|-.+.+|=|.=.++||+
T Consensus       109 ---~GYDISFLItn~h~e~m~k~klvdFIi~FmeeiDkeIsemKL~~n~raR~~Ae~fl~  165 (167)
T d1k8kf_         109 ---EGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLK  165 (167)
T ss_dssp             ---TTCSEEEEEEHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---CCCceeeeehhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence               133 89999999998666689999999998888888888888888888887777775