Citrus Sinensis ID: 022481

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MSIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHccccHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEccccccEcEccEccEEccccccEEcHHHccEEEEEHHHcEEEEEEEcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
msieppafqeatrcdvckcsfntfrrrhhcrccgrtlchehssdqmtlpqfgihtnVRVCadcfnsssrtgkdnlqvssdgvnsvtdtfsrldidsdkdpkvesvvkrhpvssvleckcgmplciceapapaastetrppqmksssttagqsnpkpkktentarsrgstsnsnfssifnpgqvtngatdkprmeyevnGEGLRDAIKNGDAAAVKKLLSegvdanfcdkqgMSLLHLAALFNRTDIAFILMEsganmdcknaqgespldcapvtLQYKMRQKMeedknnvgsttsv
Flexible Loop (DISEMBL)
msieppafqeatrcdvcKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSsrtgkdnlqvssdgvnsvtdtfsrldidsdkdpkvesvvkrhpvssvlecKCGMPLCICEAPapaastetrppqmksssttagqsnpkpkktentarsrgstsnsnfssifnpgqvtngatdkpRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRqkmeedknnvgsttsv
Low Complexity Region (SEG)
MSIEPPAFQEATRCDVCKCSFNTFrrrhhcrccgrtlchEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTArsrgstsnsnfssifnPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV
Disordered region (IsUnstruct)
**********ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN********************************************PVSSVLECKCGMPLCIC*******************************************************************************IKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM***************************************
Disordered Region (DISOPRED)
**IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVT*******************VKRHPVSSVLECKCGMPLCICEAPAPAASTET***********AGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVT*GATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV******
Disordered Region (DISEMBL)
MSIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSD***********HPVSSVLECKCGMPLCICEAPAP****************************************SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQK**************
Disordered Region (DISPRO)
****PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS********************************************SSVLECKCGMPLCICEAPAPA**************************************************VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q9VB70	989	Lateral signaling target	yes	no	0.266	0.079	0.402	2e-11
B4IC49	975	Lateral signaling target	N/A	no	0.266	0.081	0.402	3e-11
B4PRU6	984	Lateral signaling target	N/A	no	0.236	0.071	0.424	3e-11
B3P851	981	Lateral signaling target	N/A	no	0.236	0.071	0.424	4e-11
P40343	622	Vacuolar protein sorting-	yes	no	0.202	0.096	0.433	8e-11
Q6FQJ1	603	Vacuolar protein sorting-	yes	no	0.206	0.101	0.409	1e-10
Q5ABD9	841	Vacuolar protein sorting-	N/A	no	0.260	0.091	0.376	1e-10
Q755J9	604	Vacuolar protein sorting-	yes	no	0.206	0.100	0.426	2e-10
Q0V8S0	777	Hepatocyte growth factor-	yes	no	0.202	0.077	0.433	2e-10
O14964	777	Hepatocyte growth factor-	yes	no	0.226	0.086	0.388	2e-10

>sp|Q9VB70|LST2_DROME Lateral signaling target protein 2 homolog OS=Drosophila melanogaster GN=CG6051 PE=1 SV=3

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 2   SIEPPAF---QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVR 58
           ++ PPA+    +A RC  C+  F  FRRRHHCR CG   C   S+    LP++G+   VR
Sbjct: 900 TLSPPAWIPDGKAPRCMACQTPFTAFRRRHHCRNCGGVFCGVCSNASAPLPKYGLTKAVR 959

Query: 59  VCADCFNSSSRTGKDNLQVSSDGVNSV 85
           VC DC+    R+G     +   GV SV
Sbjct: 960 VCRDCYVREVRSG-----MGVQGVQSV 981

Negative regulator of epidermal growth factor receptor (EGFR) signaling.
Drosophila melanogaster (taxid: 7227)

>sp|B4IC49|LST2_DROSE Lateral signaling target protein 2 homolog OS=Drosophila sechellia GN=GM10129 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 8/87 (9%)

Query: 2   SIEPPAF---QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVR 58
           ++ PPA+    +A RC  C+  F  FRRRHHCR CG   C   S+    LP++G+   VR
Sbjct: 886 TLSPPAWIPDGKAPRCMACQTPFTAFRRRHHCRNCGGVFCGVCSNASAPLPKYGLTKAVR 945

Query: 59  VCADCFNSSSRTGKDNLQVSSDGVNSV 85
           VC DC+    R+G     +   GV SV
Sbjct: 946 VCRDCYVREVRSG-----MGVQGVQSV 967

Negative regulator of epidermal growth factor receptor (EGFR) signaling.

Drosophila sechellia (taxid: 7238)

>sp|B4PRU6|LST2_DROYA Lateral signaling target protein 2 homolog OS=Drosophila yakuba GN=GE10583 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 2   SIEPPAF---QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVR 58
           ++ PPA+    +A RC  C+  F  FRRRHHCR CG   C   S+    LP++G+   VR
Sbjct: 895 TLSPPAWIPDGKAPRCMACQTPFTAFRRRHHCRNCGGVFCGVCSNASAPLPKYGLTKAVR 954

Query: 59  VCADCFNSSSRTG 71
           VC DC+    R+G
Sbjct: 955 VCRDCYVREVRSG 967

Negative regulator of epidermal growth factor receptor (EGFR) signaling.

Drosophila yakuba (taxid: 7245)

>sp|B3P851|LST2_DROER Lateral signaling target protein 2 homolog OS=Drosophila erecta GN=GG12136 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 2   SIEPPAF---QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVR 58
           ++ PPA+    +A RC  C+  F  FRRRHHCR CG   C   S+    LP++G+   VR
Sbjct: 892 TLSPPAWIPDGKAPRCMACQTPFTAFRRRHHCRNCGGVFCGVCSNASAPLPKYGLTKAVR 951

Query: 59  VCADCFNSSSRTG 71
           VC DC+    R+G
Sbjct: 952 VCRDCYVREVRSG 964

Negative regulator of epidermal growth factor receptor (EGFR) signaling.

Drosophila erecta (taxid: 7220)

>sp|P40343|VPS27_YEAST Vacuolar protein sorting-associated protein 27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS27 PE=1 SV=3

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 5   PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
           P  + ++  C +C   F+   R+HHCR CG   C EHSS+ + LP  GI+  VRVC  CF
Sbjct: 167 PADWIDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCF 226

Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane. Controls exit from the prevacuolar compartment (PVC) in both the forward direction to the vacuole and the return to the Golgi. Allows VPS10 to return to the (trans-Golgi network) TGN from the PVC. Might also function as an alternate adapter in the COPIb clathrin-like coat.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6FQJ1|VPS27_CANGA Vacuolar protein sorting-associated protein 27 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=VPS27 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 5   PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
           P  + ++  C +C   F+   RRHHCR CG   C +HSS  + LP  GI+ +VRVC +C+
Sbjct: 167 PADWIDSDACMICSKKFSLLNRRHHCRSCGGVFCQDHSSKSIPLPDLGIYDSVRVCDNCY 226

Query: 65  N 65
           +
Sbjct: 227 D 227

Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q5ABD9|VPS27_CANAL Vacuolar protein sorting-associated protein 27 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VPS27 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 40/77 (51%)

Query: 5   PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
           PP + +   C +C   F+   R+HHCR CG   C  HSS+ + L   GI   VRVC +CF
Sbjct: 207 PPDWVDNEECMICYSPFSMLNRKHHCRACGGVFCQTHSSNNIPLVNLGIMEPVRVCDNCF 266

Query: 65  NSSSRTGKDNLQVSSDG 81
               ++ K +   SS G
Sbjct: 267 AKYDKSKKHSRNTSSSG 283

Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q755J9|VPS27_ASHGO Vacuolar protein sorting-associated protein 27 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=VPS27 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%)

Query: 5   PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
           P  + ++  C +C  +F    R+HHCR CG   C+EHSS Q+ LP+ GI   VRVC +C+
Sbjct: 172 PADWVDSDACMICSNAFTFLNRKHHCRSCGGIFCNEHSSHQLPLPEMGITEPVRVCDNCY 231

Query: 65  N 65
           +
Sbjct: 232 D 232

Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q0V8S0|HGS_BOVIN Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 34/60 (56%)

Query: 6   PAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 65
           P + +A  C  C+  F    R+HHCR CG+  C + SS   T+P+FGI   VRVC  CF 
Sbjct: 158 PDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCFE 217

Involved in intracellular signal transduction mediated by cytokines and growth factors. When associated with STAM it suppresses DNA signaling upon stimulation by IL-2 and GM-CSF. Could be a direct effector of PI3-kinase in vesicular pathway via early endosomes and may regulate trafficking to early and late endosomes by recruiting clathrin. May concentrate ubiquitinated receptors within clathrin-coated regions. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with STAM (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes. May contribute to the efficient recruitment of SMADs to the activin receptor complex. Involved in receptor recycling via its association with the CART complex, a multiprotein complex required for efficient transferrin receptor recycling but not for EGFR degradation.

Bos taurus (taxid: 9913)

>sp|O14964|HGS_HUMAN Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 37/67 (55%)

Query: 6   PAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 65
           P + +A  C  C+  F    R+HHCR CG+  C + SS   T+P+FGI   VRVC  C+ 
Sbjct: 158 PDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYE 217

Query: 66  SSSRTGK 72
             +R  +
Sbjct: 218 QLNRKAE 224

Involved in intracellular signal transduction mediated by cytokines and growth factors. When associated with STAM, it suppresses DNA signaling upon stimulation by IL-2 and GM-CSF. Could be a direct effector of PI3-kinase in vesicular pathway via early endosomes and may regulate trafficking to early and late endosomes by recruiting clathrin. May concentrate ubiquitinated receptors within clathrin-coated regions. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with STAM (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes. May contribute to the efficient recruitment of SMADs to the activin receptor complex. Involved in receptor recycling via its association with the CART complex, a multiprotein complex required for efficient transferrin receptor recycling but not for EGFR degradation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
224141709	288	predicted protein [Populus trichocarpa]	0.935	0.961	0.726	1e-114
225463157	289	PREDICTED: FYVE and coiled-coil domain-c	0.956	0.979	0.678	1e-111
255550253	294	zinc finger protein, putative [Ricinus c	0.952	0.959	0.700	1e-106
357479263	292	Protein phosphatase 1 regulatory subunit	0.939	0.952	0.679	1e-104
388513021	292	unknown [Medicago truncatula]	0.939	0.952	0.679	1e-104
356565578	291	PREDICTED: uncharacterized protein LOC10	0.935	0.951	0.665	1e-103
388513187	289	unknown [Lotus japonicus]	0.959	0.982	0.657	1e-103
255647942	291	unknown [Glycine max]	0.935	0.951	0.661	1e-102
363808358	291	uncharacterized protein LOC100814367 [Gl	0.935	0.951	0.669	1e-102
388504016	289	unknown [Lotus japonicus]	0.959	0.982	0.654	1e-102

>gi|224141709|ref|XP_002324207.1| predicted protein [Populus trichocarpa] gi|222865641|gb|EEF02772.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/285 (72%), Positives = 237/285 (83%), Gaps = 8/285 (2%)

Query: 1   MSIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVC 60
           MS EPPAFQEA+RCDVCKCSFNTFRRRHHCRCCGRTLCHEHSS+QM LPQFGI +N RVC
Sbjct: 2   MSTEPPAFQEASRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSNQMALPQFGILSNARVC 61

Query: 61  ADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCG 120
           ADCFN+S+R+ K       DGV+S+TD  SRLDID++K PK E   +    + V+ECKCG
Sbjct: 62  ADCFNNSTRSEK------VDGVDSITDKVSRLDIDTEKHPKPEPTTQNQSAAGVIECKCG 115

Query: 121 MPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNP 180
           MPLCICEAPA  A T+  P Q+K SST   QSN KPKKT+   ++RGSTS+S  SS+FN 
Sbjct: 116 MPLCICEAPA--AKTDPVPKQVKLSSTFTSQSNSKPKKTDAVPKNRGSTSSSKPSSVFNH 173

Query: 181 GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL 240
           GQ+TNG  DKP+M+YEVNGEGLR+AIKNGD  AVKKLLSEGVDAN+ DKQGMSLLHLAAL
Sbjct: 174 GQITNGGVDKPQMDYEVNGEGLREAIKNGDTVAVKKLLSEGVDANYRDKQGMSLLHLAAL 233

Query: 241 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 285
           FNRTDIAFILM+SGA+M+ KNAQGE+PLDCAP TLQYKM+QKMEE
Sbjct: 234 FNRTDIAFILMDSGASMNYKNAQGETPLDCAPATLQYKMKQKMEE 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463157|ref|XP_002268154.1| PREDICTED: FYVE and coiled-coil domain-containing protein 1 isoform 1 [Vitis vinifera] gi|296084844|emb|CBI27726.3| unnamed protein product [Vitis vinifera]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/286 (67%), Positives = 231/286 (80%), Gaps = 3/286 (1%)

Query: 1   MSIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVC 60
           MS+EPP FQEA RCDVCKCSFNTFRRRHHCRCCGRTLCHEHSS+QM LPQFG+HT+VRVC
Sbjct: 1   MSVEPPPFQEAARCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSNQMALPQFGLHTSVRVC 60

Query: 61  ADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKV-ESVVKRHPVSSVLECKC 119
           +DCFN SSR GK +   S DG+NSV D+ + L+I+ D D K  E     +PVS + +CKC
Sbjct: 61  SDCFNDSSRLGKVDPVASLDGINSVVDSVATLNINPDVDLKTGEPTTVHNPVSGISDCKC 120

Query: 120 GMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFN 179
           GMPLCICE PA  A  ET P Q K+ + +    NPKPKKT+   ++RGSTSNS    + N
Sbjct: 121 GMPLCICEVPA--APVETVPLQRKTIAISTTHLNPKPKKTDCNLKNRGSTSNSKHGLVSN 178

Query: 180 PGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA 239
            GQV+N + DKP+M+Y+ NGEGLR+AIKN D AAVKKLLS+GVDAN+CDKQG+S+LHLAA
Sbjct: 179 LGQVSNSSLDKPQMDYDANGEGLREAIKNSDTAAVKKLLSQGVDANYCDKQGLSVLHLAA 238

Query: 240 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 285
           LFN+TDIAFILMESGA+++ KNAQGE+PLDCAP TLQYKMR+KMEE
Sbjct: 239 LFNQTDIAFILMESGASLEHKNAQGETPLDCAPATLQYKMRKKMEE 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550253|ref|XP_002516177.1| zinc finger protein, putative [Ricinus communis] gi|223544663|gb|EEF46179.1| zinc finger protein, putative [Ricinus communis]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/284 (70%), Positives = 234/284 (82%), Gaps = 2/284 (0%)

Query: 2   SIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCA 61
           +IEPP F E+ RCDVCKCSF+TFRRRHHCR CGRTLCHEHSS+QM LPQFGI +NVRVCA
Sbjct: 3   AIEPPPFHESDRCDVCKCSFSTFRRRHHCRRCGRTLCHEHSSNQMALPQFGILSNVRVCA 62

Query: 62  DCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGM 121
           DCFN S+R+G+     SSDG +SVTD FSRLDI ++     E+  +   V+  +ECKCGM
Sbjct: 63  DCFNDSTRSGQTKSHASSDGAHSVTDKFSRLDIGAETYSTTETATQSQSVTGAIECKCGM 122

Query: 122 PLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPG 181
           PLCICEAPAP A  E  P QMK+ S++  QSNPKPKKT+   R+R S+SN+  SS+FN G
Sbjct: 123 PLCICEAPAPIA--EAVPLQMKTPSSSMSQSNPKPKKTDANLRNRVSSSNNKPSSVFNHG 180

Query: 182 QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 241
           Q TNG++D P+M+YEVNGEGLR+AIKNGD AAVKKLLSEGVDAN+ DKQG+SLLHLAALF
Sbjct: 181 QTTNGSSDSPQMDYEVNGEGLREAIKNGDTAAVKKLLSEGVDANYRDKQGLSLLHLAALF 240

Query: 242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 285
           NRTDIAFILMESGA++  KNAQGE+PLDCAP TLQYKM++KMEE
Sbjct: 241 NRTDIAFILMESGASLAYKNAQGETPLDCAPATLQYKMKKKMEE 284

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479263|ref|XP_003609917.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula] gi|355510972|gb|AES92114.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/281 (67%), Positives = 228/281 (81%), Gaps = 3/281 (1%)

Query: 5   PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
           PP FQEA RC VC CSFNTFRRRHHCRCCGRTLC EHSSDQM LPQFGI++NVRVCADCF
Sbjct: 7   PPPFQEAARCVVCSCSFNTFRRRHHCRCCGRTLCSEHSSDQMALPQFGIYSNVRVCADCF 66

Query: 65  NSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLC 124
           N+S R+GK   Q S+DGVNS+TD  S LDID++ D K +     +  S V ECKCGMPLC
Sbjct: 67  NNS-RSGKGVRQTSTDGVNSITDAVSELDIDANVDSKRKPTADNNLASGVKECKCGMPLC 125

Query: 125 ICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVT 184
           ICEAP P++S    P + KS       SNPKPKKT+N ++SR S+S + FSS+FNPG VT
Sbjct: 126 ICEAPPPSSSAV--PQEKKSIPVVTAPSNPKPKKTDNASKSRSSSSTNKFSSMFNPGHVT 183

Query: 185 NGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT 244
            G +++P+++YEVNGEGLR+AIKNGD AAVKKLL+EGVDAN+ DKQG+SLLHLAA+FN+T
Sbjct: 184 TGTSNRPQIDYEVNGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQT 243

Query: 245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 285
           DI FILM+SGAN++ KNAQGE+PLDCAP TLQYKM+ KM+E
Sbjct: 244 DIVFILMDSGANLEYKNAQGETPLDCAPATLQYKMKMKMQE 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513021|gb|AFK44572.1| unknown [Medicago truncatula]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/281 (67%), Positives = 228/281 (81%), Gaps = 3/281 (1%)

Query: 5   PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
           PP FQEA RC VC CSFNTFRRRHHCRCCGRTLC EHSSDQM LPQFGI++NVRVCADCF
Sbjct: 7   PPPFQEAARCVVCSCSFNTFRRRHHCRCCGRTLCSEHSSDQMALPQFGIYSNVRVCADCF 66

Query: 65  NSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLC 124
           N+S R+GK   Q S+DGVNS+TD  S LDID++ D K +     +  S V ECKCGMPLC
Sbjct: 67  NNS-RSGKGVRQTSTDGVNSITDAVSELDIDANVDSKRKPTADNNLASGVKECKCGMPLC 125

Query: 125 ICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVT 184
           ICEAP P++S    P + KS       SNPKPKKT+N ++SR S+S + FSS+FNPG VT
Sbjct: 126 ICEAPPPSSSAV--PQEKKSIPVVTAPSNPKPKKTDNASKSRSSSSTNKFSSMFNPGHVT 183

Query: 185 NGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT 244
            G +++P+++YEVNGEGLR+AIKNGD AAVKKLL+EGVDAN+ DKQG+SLLHLAA+FN+T
Sbjct: 184 TGTSNRPQIDYEVNGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQT 243

Query: 245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 285
           DI FILM+SGAN++ KNAQGE+PLDCAP TLQYKM+ KM+E
Sbjct: 244 DIVFILMDSGANLEYKNAQGETPLDCAPATLQYKMKMKMQE 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565578|ref|XP_003551016.1| PREDICTED: uncharacterized protein LOC100804827 [Glycine max]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/281 (66%), Positives = 226/281 (80%), Gaps = 4/281 (1%)

Query: 5   PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
           PP+FQEA RC VC CSFNTFRRRHHCR CGRTLC+EHSS+QM LPQFG+++NVRVCADCF
Sbjct: 7   PPSFQEAARCVVCNCSFNTFRRRHHCRSCGRTLCNEHSSNQMALPQFGLYSNVRVCADCF 66

Query: 65  NSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLC 124
           N+  R+GKD  Q SSDGVNSVTDT S+LDI+++ D K     +   +S + ECKCGMPLC
Sbjct: 67  NNL-RSGKDEPQTSSDGVNSVTDTISKLDINANVDSKSILTAETKLLSGIKECKCGMPLC 125

Query: 125 ICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVT 184
           ICEAP P++      PQ K +   A  SNPKPKKT+   + R S S S FSS+FN G VT
Sbjct: 126 ICEAPTPSSDAF---PQQKPNPVIAAPSNPKPKKTDTVPKIRSSISTSKFSSMFNVGHVT 182

Query: 185 NGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT 244
           NG +D+P+++YEV GEGLR+AIKN D AAVKKLL+EGVDAN+ DKQG+SLLHLAA+FN+T
Sbjct: 183 NGTSDRPQIDYEVTGEGLREAIKNSDVAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQT 242

Query: 245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 285
           DI FILM+SGA+++ +NAQGE+PLDCAP TLQYKMR+KMEE
Sbjct: 243 DIVFILMDSGASLEYRNAQGETPLDCAPATLQYKMRKKMEE 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513187|gb|AFK44655.1| unknown [Lotus japonicus]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/292 (65%), Positives = 230/292 (78%), Gaps = 8/292 (2%)

Query: 1   MSIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVC 60
           MS EPP FQEA RC VC CSFNTFRRRHHCR CGRTLC+EHSSDQM LPQFG+++NVRVC
Sbjct: 1   MSTEPPPFQEAARCVVCSCSFNTFRRRHHCRSCGRTLCNEHSSDQMALPQFGLYSNVRVC 60

Query: 61  ADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCG 120
           ADCFN+S    ++    SSDGVN++TDT S+LDID + D K       +PVS + ECKCG
Sbjct: 61  ADCFNNSR--SQEVPHASSDGVNNITDTISKLDIDGNVDSKTLPSADNNPVSGIKECKCG 118

Query: 121 MPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNP 180
           MPLCICEAPAP  S++  P Q K S      SNPKP+KT+  +++R S+S + FSS FN 
Sbjct: 119 MPLCICEAPAP--SSDALPQQKKISPAMTASSNPKPRKTDTVSKNRSSSSTNKFSSPFNL 176

Query: 181 GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL 240
           G VTN A+ +P+ +YEV+GEGLR+AIKNGD AAVKKLL+EGVDAN+ DKQG+SLLHLAA+
Sbjct: 177 GHVTNVASARPQTDYEVSGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAV 236

Query: 241 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE----DKN 288
           FN+TDI FILM+SGA++  KNAQGE+PLDCAP TLQYKMR+KMEE    DKN
Sbjct: 237 FNQTDIVFILMDSGASLKYKNAQGETPLDCAPATLQYKMRKKMEEGGVMDKN 288

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647942|gb|ACU24428.1| unknown [Glycine max]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/281 (66%), Positives = 226/281 (80%), Gaps = 4/281 (1%)

Query: 5   PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
           PP+FQEA RC VC CSFNTFRRRHHCR CGRTLC+EHSS+QM LPQFG+++NVRVCADCF
Sbjct: 7   PPSFQEAARCVVCNCSFNTFRRRHHCRSCGRTLCNEHSSNQMALPQFGLYSNVRVCADCF 66

Query: 65  NSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLC 124
           N+  R+GKD  Q SSDGVNSVTDT S+LDI+++ D K     +   +S + ECKCGMPLC
Sbjct: 67  NNL-RSGKDEPQTSSDGVNSVTDTISKLDINANVDSKSILTAETKLLSGIKECKCGMPLC 125

Query: 125 ICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVT 184
           ICEAP P++      PQ K +   A  SNPKPKKT+   + R S S S FSS+FN G+VT
Sbjct: 126 ICEAPTPSSDAF---PQQKPNPVIAAPSNPKPKKTDTVPKIRSSISTSKFSSMFNVGRVT 182

Query: 185 NGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT 244
           NG +D+P+++YEV GEGLR+AIKN D AAVKKLL+EGVDAN+ DKQG+SLLHLAA+FN+T
Sbjct: 183 NGTSDRPQIDYEVTGEGLREAIKNSDVAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQT 242

Query: 245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 285
           DI FILM+SGA+++ +NAQGE+PLDCAP  LQYKMR+KMEE
Sbjct: 243 DIVFILMDSGASLEYRNAQGETPLDCAPAPLQYKMRKKMEE 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808358|ref|NP_001241998.1| uncharacterized protein LOC100814367 [Glycine max] gi|255636154|gb|ACU18419.1| unknown [Glycine max]

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/281 (66%), Positives = 225/281 (80%), Gaps = 4/281 (1%)

Query: 5   PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
           P  FQEA RC VC CSFNTFRRRHH R CGRTLC+EHSSDQM LPQFGI++NVRVCADCF
Sbjct: 7   PSPFQEAARCVVCNCSFNTFRRRHHYRSCGRTLCNEHSSDQMALPQFGIYSNVRVCADCF 66

Query: 65  NSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCGMPLC 124
           N+S R+GKD  Q SSDGVNSVTDT S+LDI+++ D K     +   V  + ECKCGMPLC
Sbjct: 67  NNS-RSGKDEPQTSSDGVNSVTDTISKLDINTNVDSKSIPTAENKLVLGIKECKCGMPLC 125

Query: 125 ICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNPGQVT 184
           ICEAP P++      PQ K +   A  SNPK KKT+   ++R S+S S FSS+FN G VT
Sbjct: 126 ICEAPTPSSDAL---PQQKPNPVIAAPSNPKSKKTDTVPKNRSSSSTSKFSSMFNVGHVT 182

Query: 185 NGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT 244
           NG +D+P+++YEV GEGLR+AIKNGD AAVKKLL+EGVDAN+ DKQG+SLLHLAA+FN+T
Sbjct: 183 NGTSDRPQIDYEVTGEGLREAIKNGDIAAVKKLLNEGVDANYRDKQGLSLLHLAAVFNQT 242

Query: 245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 285
           DI FILM+SGA+++ KNAQGE+P+DCAP TLQYKMR+KMEE
Sbjct: 243 DIVFILMDSGASLEYKNAQGETPIDCAPATLQYKMRKKMEE 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504016|gb|AFK40074.1| unknown [Lotus japonicus]

 Score =  375 bits (964), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/292 (65%), Positives = 228/292 (78%), Gaps = 8/292 (2%)

Query: 1   MSIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVC 60
           MS EPP FQEA RC VC CSFNTFRRRHHCR CGRTLC+EHSSDQM LPQFG+++NVRVC
Sbjct: 1   MSTEPPPFQEAARCVVCSCSFNTFRRRHHCRSCGRTLCNEHSSDQMALPQFGLYSNVRVC 60

Query: 61  ADCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSDKDPKVESVVKRHPVSSVLECKCG 120
           ADCFN+S    ++    SSDGVN++TDT S+LDID + D K       +PVS + ECKCG
Sbjct: 61  ADCFNNSR--SQEVPHASSDGVNNITDTISKLDIDGNVDSKTLPSADNNPVSGIKECKCG 118

Query: 121 MPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFNP 180
           MPLCICEAPAP  S++  P Q K S      SNPKP+KT+  +++R S+S + FSS FN 
Sbjct: 119 MPLCICEAPAP--SSDALPQQKKISPAMTASSNPKPRKTDTVSKNRSSSSTNKFSSPFNL 176

Query: 181 GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL 240
           G VTN A+ +P+ +YEV+GEG R+AIKNGD AAVKKLL+EGVDAN  DKQG+SLLHLAA+
Sbjct: 177 GHVTNVASARPQTDYEVSGEGPREAIKNGDIAAVKKLLNEGVDANHRDKQGLSLLHLAAV 236

Query: 241 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE----DKN 288
           FN+TDI FILM+SGA++  KNAQGE+PLDCAP TLQYKMR+KMEE    DKN
Sbjct: 237 FNQTDIVFILMDSGASLKYKNAQGEAPLDCAPATLQYKMRKKMEEGGVMDKN 288

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2057746	190	AT2G26210 [Arabidopsis thalian	0.540	0.842	0.526	1.7e-41
DICTYBASE|DDB_G0280923	93	DDB_G0280923 "ankyrin repeat-c	0.263	0.838	0.407	8.4e-10
UNIPROTKB|Q8EID4	105	SO_0908 "Ankyrin domain protei	0.25	0.704	0.368	7.3e-07
TIGR_CMR|SO_0908	105	SO_0908 "conserved domain prot	0.25	0.704	0.368	7.3e-07
MGI|MGI:1916549	290	Asb9 "ankyrin repeat and SOCS	0.266	0.272	0.369	4.9e-06
UNIPROTKB|Q83EV7	131	CBU_0201 "Ankyrin repeat prote	0.243	0.549	0.351	1.2e-05
TIGR_CMR|CBU_0201	131	CBU_0201 "ankyrin repeat famil	0.243	0.549	0.351	1.2e-05
UNIPROTKB|Q5ZIZ1	172	PPP1R12A "Protein phosphatase	0.273	0.470	0.304	2.5e-05
UNIPROTKB|E2QRR4	293	ASB9 "Uncharacterized protein"	0.263	0.266	0.349	4.3e-05
UNIPROTKB|O95271	1327	TNKS "Tankyrase-1" [Homo sapie	0.456	0.101	0.293	6.3e-05

TAIR|locus:2057746 AT2G26210 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 91/173 (52%), Positives = 116/173 (67%)

Query:   112 SSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTAXXXXXXXX 171
             S  +ECKCGMPLCIC AP P ++ +  PP     +T A    P+  K+E +A        
Sbjct:    29 SETMECKCGMPLCICVAP-PKSTDKPNPP-----ATIAPVVLPQ-LKSEASAKSKGSTSS 81

Query:   172 XXXXXXXXPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG 231
                          N   D P+ +YE +GEGLR+AIKNGD+A  KKLL EGVDAN+ D+QG
Sbjct:    82 SNARSAL------NAGLDTPQRDYEASGEGLREAIKNGDSAGAKKLLKEGVDANYRDRQG 135

Query:   232 MSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME 284
             MS+LHLA LFN+TDIA +LM+ GA+++ KNAQGE+PLDCAP TLQYKMR+KM+
Sbjct:   136 MSVLHLAVLFNQTDIALMLMDHGASLEYKNAQGETPLDCAPATLQYKMREKMK 188

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0280923 DDB_G0280923 "ankyrin repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 144 (55.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query:   198 NGEGLRDAIKNGDAAAVKKLLSEGVDA--NFCDKQGMSLLHLAALFNRTDIAFILMESGA 255
             NG  LRDA K+G+   VK L++EG  +  ++ D+ G + LH+AA+F   +I  IL+++GA
Sbjct:     4 NGAKLRDAAKSGNEELVKSLIAEGPSSILDYKDRSGFTPLHMAAMFGHQNICTILLQAGA 63

Query:   256 NMDCKNAQGESPLDCAP-VTL 275
             + D K    E+  D A  VTL
Sbjct:    64 SNDIKTVDDETACDVAKTVTL 84

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q8EID4 SO_0908 "Ankyrin domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 118 (46.6 bits), Expect = 7.3e-07, P = 7.3e-07
 Identities = 28/76 (36%), Positives = 46/76 (60%)

Query:   205 AIKNGDAAAVKKLLSEGVDANFCDKQGMS-LLHLAALFNRTDIAFILMESGANMDCKNAQ 263
             A+K  D  AVK++++ G D    D+ GM+ LLH   L    +I  +L+++GA+++  NAQ
Sbjct:     8 AVKAKDTLAVKRIIANGADLECVDENGMTALLHACEL-QSFEILKLLVDAGADVNHPNAQ 66

Query:   264 GESPLDCAPVTLQYKM 279
             G  PLD A    +++M
Sbjct:    67 GYQPLDIAYWQGEFRM 82

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_0908 SO_0908 "conserved domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 118 (46.6 bits), Expect = 7.3e-07, P = 7.3e-07
 Identities = 28/76 (36%), Positives = 46/76 (60%)

Query:   205 AIKNGDAAAVKKLLSEGVDANFCDKQGMS-LLHLAALFNRTDIAFILMESGANMDCKNAQ 263
             A+K  D  AVK++++ G D    D+ GM+ LLH   L    +I  +L+++GA+++  NAQ
Sbjct:     8 AVKAKDTLAVKRIIANGADLECVDENGMTALLHACEL-QSFEILKLLVDAGADVNHPNAQ 66

Query:   264 GESPLDCAPVTLQYKM 279
             G  PLD A    +++M
Sbjct:    67 GYQPLDIAYWQGEFRM 82

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1916549 Asb9 "ankyrin repeat and SOCS box-containing 9" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 31/84 (36%), Positives = 46/84 (54%)

Query:   193 MEYEVN--GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGM-SLLHLAALFNRTDIAFI 249
             ++Y ++  G  L  A KN   A  KKLL  GV  N    +G+ S LH+ A  +  ++  +
Sbjct:   156 IDYNISHLGTPLYVACKNQQVACAKKLLESGVSVN--QGKGLDSPLHVVARMSSVELVHL 213

Query:   250 LMESGANMDCKNAQGESPLDCAPV 273
             LM+ GAN   KNA G+ P+D  P+
Sbjct:   214 LMDFGANAQAKNADGKRPVDLVPL 237

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0045732 "positive regulation of protein catabolic process" evidence=ISO

UNIPROTKB|Q83EV7 CBU_0201 "Ankyrin repeat protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 107 (42.7 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 26/74 (35%), Positives = 42/74 (56%)

Query:   196 EVNGEGLRDAIKNGDAAAVKKLLSEGVDAN-FCDKQGMSLLHLAALFNRTDIAFILMESG 254
             ++N E L DA+       VK+LL  G D N F D+  +  LH AAL+N  D+  +L+ +G
Sbjct:    30 KINKE-LLDAVIGNHFHTVKRLLENGADPNYFEDEAQIRPLHFAALYNSPDVVPLLIMAG 88

Query:   255 ANMDCKNAQGESPL 268
             A+++      ++PL
Sbjct:    89 ADLNATTEYDDTPL 102

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_0201 CBU_0201 "ankyrin repeat family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 107 (42.7 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 26/74 (35%), Positives = 42/74 (56%)

Query:   196 EVNGEGLRDAIKNGDAAAVKKLLSEGVDAN-FCDKQGMSLLHLAALFNRTDIAFILMESG 254
             ++N E L DA+       VK+LL  G D N F D+  +  LH AAL+N  D+  +L+ +G
Sbjct:    30 KINKE-LLDAVIGNHFHTVKRLLENGADPNYFEDEAQIRPLHFAALYNSPDVVPLLIMAG 88

Query:   255 ANMDCKNAQGESPL 268
             A+++      ++PL
Sbjct:    89 ADLNATTEYDDTPL 102

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5ZIZ1 PPP1R12A "Protein phosphatase 1 regulatory subunit 12A" [Gallus gallus (taxid:9031)]

 Score = 115 (45.5 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 25/82 (30%), Positives = 46/82 (56%)

Query:   190 KPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFI 249
             K +++++ +G     A  +GD   V +LL  G D N+ +  G++ LH A + +  D+   
Sbjct:    33 KTKVKFD-DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKF 91

Query:   250 LMESGANMDCKNAQGESPLDCA 271
             L+E+GAN++  + +G  PL  A
Sbjct:    92 LVENGANINQPDNEGWIPLHAA 113

GO:0000776 "kinetochore" evidence=IEA

GO:0004857 "enzyme inhibitor activity" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019208 "phosphatase regulator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030155 "regulation of cell adhesion" evidence=IEA

GO:0035507 "regulation of myosin-light-chain-phosphatase activity" evidence=IEA

GO:0043292 "contractile fiber" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0046822 "regulation of nucleocytoplasmic transport" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

GO:0072357 "PTW/PP1 phosphatase complex" evidence=IEA

UNIPROTKB|E2QRR4 ASB9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 121 (47.7 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 29/83 (34%), Positives = 46/83 (55%)

Query:   193 MEYEVN--GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGM-SLLHLAALFNRTDIAFI 249
             ++Y ++  G  L  A +N   A  KKLL  G   N    +G+ S LH+ A  +  ++A +
Sbjct:   159 VDYNISHLGTPLYQACENQQVACAKKLLESGASVN--QGRGLDSPLHVVARASSRELALL 216

Query:   250 LMESGANMDCKNAQGESPLDCAP 272
             LM+ GA+   KNA+G+ PL+  P
Sbjct:   217 LMDFGADTQAKNAEGKRPLELVP 239

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|O95271 TNKS "Tankyrase-1" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 42/143 (29%), Positives = 62/143 (43%)

Query:   128 APAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTAXXXXXXXXXXXXXXXXPGQVTNGA 187
             AP PA S     P   SS T++  S+P      ++                 PG    G 
Sbjct:   117 APNPAGSGSNNSPSSSSSPTSSSSSSPS--SPGSSLAESPEAAGVSSTAPLGPGAAGPG- 173

Query:   188 TDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGM--SLLHLAALFNRTD 245
             T  P +   +    L +A +NGD + VK+L+ +  + N  D  G   S LH AA F R D
Sbjct:   174 TGVPAVSGALRE--LLEACRNGDVSRVKRLV-DAANVNAKDMAGRKSSPLHFAAGFGRKD 230

Query:   246 IAFILMESGANMDCKNAQGESPL 268
             +   L++ GAN+  ++  G  PL
Sbjct:   231 VVEHLLQMGANVHARDDGGLIPL 253

GO:0007067 "mitosis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IDA

GO:0000781 "chromosome, telomeric region" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=IDA

GO:0070213 "protein auto-ADP-ribosylation" evidence=IDA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IDA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IDA

GO:0007052 "mitotic spindle organization" evidence=TAS

GO:0051225 "spindle assembly" evidence=TAS

GO:0000242 "pericentriolar material" evidence=TAS

GO:0005643 "nuclear pore" evidence=TAS

GO:0031965 "nuclear membrane" evidence=TAS

GO:0008270 "zinc ion binding" evidence=IDA

GO:0070212 "protein poly-ADP-ribosylation" evidence=IDA

GO:0006471 "protein ADP-ribosylation" evidence=IDA

GO:0032210 "regulation of telomere maintenance via telomerase" evidence=IC

GO:0043392 "negative regulation of DNA binding" evidence=IDA

GO:0032212 "positive regulation of telomere maintenance via telomerase" evidence=IMP;IDA

GO:0000784 "nuclear chromosome, telomeric region" evidence=IDA

GO:0070198 "protein localization to chromosome, telomeric region" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
smart00064	68	smart00064, FYVE, Protein present in Fab1, YOTB, V	9e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-16
pfam01363	68	pfam01363, FYVE, FYVE zinc finger	5e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-16
cd00065	57	cd00065, FYVE, FYVE domain; Zinc-binding domain; t	3e-15
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-12
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	7e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.003

>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1

 Score = 72.9 bits (179), Expect = 9e-17
 Identities = 27/62 (43%), Positives = 36/62 (58%)

Query: 8  FQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 67
           +E + C  C   FN  +RRHHCR CGR  C + SS +  LP+ GI   VRVC DC+ + 
Sbjct: 7  DEEVSNCMGCGKEFNLTKRRHHCRNCGRIFCSKCSSKKAPLPKLGIERPVRVCDDCYENL 66

Query: 68 SR 69
          + 
Sbjct: 67 NG 68

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHD finger and the RING finger. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. The FYVE finger functions in the membrane recruitment of cytosolic proteins by binding to phosphatidylinositol 3-phosphate (PI3P), which is prominent on endosomes. The R+HHC+XCG motif is critical for PI3P binding. Length = 68

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.0 bits (182), Expect = 1e-16
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A  NG    VK LL  G D N  D  G + LHLAA     +I  +L+E GA+++ ++  G
Sbjct: 14  AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 74  NTPLHLA 80

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger

 Score = 70.9 bits (174), Expect = 5e-16
 Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 9  QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMT-LPQFGIHTNVRVCADCFN 65
           + T C  C   F+ FRRRHHCR CG+  C   SS ++  LP+ GI+  VRVC DC++
Sbjct: 7  SDVTNCMGCGKPFSFFRRRHHCRNCGKVFCSSCSSKKIALLPKLGINKPVRVCDDCYD 64

The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn++ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. We have included members which do not conserve these histidine residues but are clearly related. Length = 68

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 72.4 bits (178), Expect = 6e-16
 Identities = 28/70 (40%), Positives = 40/70 (57%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A KNG    VK LL +G D N  DK G + LHLAA     D+  +L++ GA+++ ++
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103

Query: 262 AQGESPLDCA 271
             G +PL  A
Sbjct: 104 KDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

 Score = 68.2 bits (167), Expect = 3e-15
 Identities = 25/55 (45%), Positives = 32/55 (58%)

Query: 10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
          +A+ C  C   F   RRRHHCR CGR  C + SS+++ LP  G    VRVC  C+
Sbjct: 1  DASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCY 55

Length = 57

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A KNG+   VK LL +G D N  D    + LHLAA     +I  +L+E GA+++ K+  G
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61

Query: 265 ESPLDCA 271
            + L  A
Sbjct: 62  NTALHLA 68

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 24/57 (42%), Positives = 34/57 (59%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           A +NG+   VK LL  G D N  DK G + LHLAA     +I  +L+E GA+++ K+
Sbjct: 35  AARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 217 LLSEGVDANFC-DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           LL  G       D  G + LHLAA +   ++   L++ G +++ +++ G + LD A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 225 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           N  D+ G + LHLAA     ++  +L+E+GA+++ K+  G +PL  A
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLA 47

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 30/86 (34%), Positives = 43/86 (50%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           AIK GD  ++K L   G D N  D  G   +H+A   N  DI  +L+E GA  + K+  G
Sbjct: 131 AIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNG 190

Query: 265 ESPLDCAPVTLQYKMRQKMEEDKNNV 290
           ESPL  A     Y   + + +  N++
Sbjct: 191 ESPLHNAAEYGDYACIKLLIDHGNHI 216

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 8/75 (10%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFI-----LMESGANMD- 258
           A   GD   VK LL+ G D N  D  G + LHLAAL        I     L+E+GA++D 
Sbjct: 80  AASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV 139

Query: 259 --CKNAQGESPLDCA 271
              ++  G +PL  A
Sbjct: 140 NNLRDEDGNTPLHWA 154

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 250
           L  A  +G    VK LL +GVD N  D+ G + LH+AA     ++  +L
Sbjct: 5   LHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 21/64 (32%), Positives = 34/64 (53%)

Query: 208 NGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESP 267
           +GDA   + LL+ G D N  D  G + LH+A       +  +L+E GA+    +  G++P
Sbjct: 92  SGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTP 151

Query: 268 LDCA 271
           L+ A
Sbjct: 152 LELA 155

Length = 664

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 19/47 (40%), Positives = 26/47 (55%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM 251
           A +NG+   VK LL  G D N  DK G + LHLAA     ++  +L+
Sbjct: 80  AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 231 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           G + LH AA+  R ++   L+E G +++  +  G + L  A
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIA 41

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)

Query: 202 LRDAIKNGDAAAVKKLLSEG--VDANFC-DKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           L      G+    K LL  G  +D N   D+ G + LH AAL    DI  +L+E+GA+ +
Sbjct: 115 LNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPN 174

Query: 259 CKNAQGESPLD 269
            +N+ G + LD
Sbjct: 175 SRNSYGVTALD 185

Length = 235

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDAN-FCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           L DA++ GD  AV++LL  G  A+    K GM+ LHLA +  + DI  +L+  GA+ D  
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 261 NAQGESPLDCAPVTLQYKM 279
           N    SPL  A +    K 
Sbjct: 132 NTDKFSPLHLAVMMGDIKG 150

Length = 413

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%)

Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L  A K  D  A+K+LL +G++ +  D QG + L +A   +  D+  +L+ +GA++D
Sbjct: 623 GDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD 682

Query: 259 CKNAQGESPLDCAPVTLQYKMRQKME 284
             N       D +P  L+ ++ QK E
Sbjct: 683 KANTDD----DFSPTELR-ELLQKRE 703

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.1 bits (87), Expect = 3e-04
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 230 QGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
            G + LHLAA     ++  +L+E+GA+++ ++
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 18/60 (30%), Positives = 34/60 (56%)

Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
           G+AA +++LL   +D +  D +G + LH+AA     D   +L++   N+  ++A G + L
Sbjct: 536 GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLA 238
           L  A K G    V+ LL  GVD N  D  G++ L LA
Sbjct: 20  LHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 25/67 (37%), Positives = 34/67 (50%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A +N D    + LLS G + N  DK   S LH A       I  IL+E+GA+ D ++
Sbjct: 172 LHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARD 231

Query: 262 AQGESPL 268
             G +PL
Sbjct: 232 KCGNTPL 238

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
           V  LLS GV  N  D  G + LH A   N  +    L++ GAN +  N  G++PL
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL 229

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.0 bits (90), Expect = 0.001
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           A  NGDA  V+ LL  G D N  +  G++ L  AA   R ++  +L++ G ++ 
Sbjct: 154 AALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLS 207

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 207 KNG-DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-TDIAFILMESGANMDCKNAQG 264
           KNG D   ++ L+  G D N  D+  ++ LH A+  +R  DI   L+E GAN++ ++   
Sbjct: 316 KNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCD 375

Query: 265 ESPLDCAPV 273
           ++P+  A V
Sbjct: 376 KTPIHYAAV 384

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 214 VKKLLSEGVDANFCDKQGMSLLH--LAALFNRTDIAFILMESGANMDCKNAQGESPLDC 270
           +K L+  G D N  DK G + LH  L+       +  +L+  GA+++  +  G +PL  
Sbjct: 100 IKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158

Length = 471

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.91
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.9
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.85
PHA02791	284	ankyrin-like protein; Provisional	99.85
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.85
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.84
PHA02859	209	ankyrin repeat protein; Provisional	99.83
KOG0508	615	consensus Ankyrin repeat protein [General function	99.83
PF01363	69	FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f	99.83
PHA02791	284	ankyrin-like protein; Provisional	99.83
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.82
PHA02878	477	ankyrin repeat protein; Provisional	99.82
PHA02875	413	ankyrin repeat protein; Provisional	99.81
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.81
PHA02875	413	ankyrin repeat protein; Provisional	99.8
PHA03095	471	ankyrin-like protein; Provisional	99.8
PHA02874	434	ankyrin repeat protein; Provisional	99.8
PHA02798	489	ankyrin-like protein; Provisional	99.79
PHA02878	477	ankyrin repeat protein; Provisional	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
PHA02859	209	ankyrin repeat protein; Provisional	99.79
PHA02946	446	ankyin-like protein; Provisional	99.79
smart00064	68	FYVE Protein present in Fab1, YOTB, Vac1, and EEA1	99.79
PHA02884	300	ankyrin repeat protein; Provisional	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.78
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.78
PHA02874	434	ankyrin repeat protein; Provisional	99.78
PHA03100	480	ankyrin repeat protein; Provisional	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
PHA02741	169	hypothetical protein; Provisional	99.77
PHA02795	437	ankyrin-like protein; Provisional	99.77
PHA03100	480	ankyrin repeat protein; Provisional	99.77
PHA02741	169	hypothetical protein; Provisional	99.77
PHA02743	166	Viral ankyrin protein; Provisional	99.76
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.76
PHA02884	300	ankyrin repeat protein; Provisional	99.75
PHA03095	471	ankyrin-like protein; Provisional	99.75
PHA02795	437	ankyrin-like protein; Provisional	99.75
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.74
PHA02989	494	ankyrin repeat protein; Provisional	99.74
PHA02876	682	ankyrin repeat protein; Provisional	99.74
PHA02989	494	ankyrin repeat protein; Provisional	99.74
KOG0508	615	consensus Ankyrin repeat protein [General function	99.73
PHA02730	672	ankyrin-like protein; Provisional	99.73
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.73
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.72
KOG0510	929	consensus Ankyrin repeat protein [General function	99.72
PHA02798	489	ankyrin-like protein; Provisional	99.72
PHA02917	661	ankyrin-like protein; Provisional	99.71
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.71
PHA02946	446	ankyin-like protein; Provisional	99.71
KOG0514	452	consensus Ankyrin repeat protein [General function	99.7
PHA02917	661	ankyrin-like protein; Provisional	99.69
KOG0514	452	consensus Ankyrin repeat protein [General function	99.69
PHA02876	682	ankyrin repeat protein; Provisional	99.68
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.68
PHA02736	154	Viral ankyrin protein; Provisional	99.67
KOG1729	288	consensus FYVE finger containing protein [General	99.66
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.65
KOG1818	634	consensus Membrane trafficking and cell signaling	99.65
PHA02792	631	ankyrin-like protein; Provisional	99.63
KOG0510	929	consensus Ankyrin repeat protein [General function	99.63
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.63
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.62
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.62
PHA02792	631	ankyrin-like protein; Provisional	99.61
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.61
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.61
PHA02730	672	ankyrin-like protein; Provisional	99.6
cd00065	57	FYVE FYVE domain; Zinc-binding domain; targets pro	99.59
KOG1819	990	consensus FYVE finger-containing proteins [General	99.59
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.59
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.59
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.57
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.56
PTZ00303	1374	phosphatidylinositol kinase; Provisional	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.52
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.52
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.51
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.49
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.49
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.48
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.48
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.46
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.41
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.35
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.33
KOG1842	505	consensus FYVE finger-containing protein [General	99.33
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.32
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.19
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.14
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.13
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.12
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.08
KOG1841	1287	consensus Smad anchor for receptor activation [Def	99.04
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.01
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.99
PF13606	30	Ank_3: Ankyrin repeat	98.99
PF13606	30	Ank_3: Ankyrin repeat	98.97
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.95
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.94
KOG0522	560	consensus Ankyrin repeat protein [General function	98.94
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.93
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.86
KOG0511	516	consensus Ankyrin repeat protein [General function	98.77
KOG2384	223	consensus Major histocompatibility complex protein	98.62
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.59
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.59
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.57
KOG1843	473	consensus Uncharacterized conserved protein [Funct	98.5
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.49
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.31
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.27
KOG2384	223	consensus Major histocompatibility complex protein	98.25
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.23
KOG0511	516	consensus Ankyrin repeat protein [General function	98.23
KOG0522	560	consensus Ankyrin repeat protein [General function	98.2
KOG4424	623	consensus Predicted Rho/Rac guanine nucleotide exc	98.05
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.04
KOG1811	1141	consensus Predicted Zn2+-binding protein, contains	97.98
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.83
KOG0230	1598	consensus Phosphatidylinositol-4-phosphate 5-kinas	97.67
KOG2505	591	consensus Ankyrin repeat protein [General function	97.58
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.39
PF02318	118	FYVE_2: FYVE-type zinc finger; InterPro: IPR003315	97.34
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.32
KOG0230	1598	consensus Phosphatidylinositol-4-phosphate 5-kinas	97.29
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.03
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.48
KOG2505	591	consensus Ankyrin repeat protein [General function	96.43
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	94.44
KOG1729	288	consensus FYVE finger containing protein [General	94.22
KOG0993	542	consensus Rab5 GTPase effector Rabaptin-5 [Intrace	94.2
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	93.66
KOG1841	1287	consensus Smad anchor for receptor activation [Def	93.5
KOG3576	267	consensus Ovo and related transcription factors [T	92.18
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.83
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.72
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	91.33
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.88
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	90.38
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	89.29
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	88.72
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	88.5
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	88.04
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	87.88
PHA02768	55	hypothetical protein; Provisional	86.78
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	86.39
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	86.28
PF14634	44	zf-RING_5: zinc-RING finger domain	84.31
COG5151	421	SSL1 RNA polymerase II transcription initiation/nu	81.0

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=8.2e-25  Score=173.04  Aligned_cols=123  Identities=26%  Similarity=0.315  Sum_probs=91.2

Q ss_pred             CCCCCCcCccccc-CCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCC
Q 022481          166 RGSTSNSNFSSIF-NPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNR  243 (296)
Q Consensus       166 ~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~~g~  243 (296)
                      .+.+...++.+|+ +.+..+|..|+.||+       |||.|+..|+.++|+.|+.+ |+|+|..+..|.|+||||+-.|+
T Consensus        46 ~S~g~~eiv~fLlsq~nv~~ddkDdaGWt-------Plhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r  118 (226)
T KOG4412|consen   46 CSFGHVEIVYFLLSQPNVKPDDKDDAGWT-------PLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGR  118 (226)
T ss_pred             eecCchhHHHHHHhcCCCCCCCccccCCc-------hhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCCh
Confidence            3445666677776 556666666665555       77777777777777777776 77777777777777777777777


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      .+|+++||++|+.++++|..|.||||.|+..|+++++++|+..||.+|.+|+
T Consensus       119 ~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk  170 (226)
T KOG4412|consen  119 LEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK  170 (226)
T ss_pred             hhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccc
Confidence            7777777777777777777777777777777777777777777777777764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=4.2e-24  Score=169.07  Aligned_cols=128  Identities=20%  Similarity=0.228  Sum_probs=118.9

Q ss_pred             cccCCCCCCCCcCcccccCC-CCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 022481          161 NTARSRGSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA  239 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~  239 (296)
                      +...+++.++..+++.|+.. |+++|..+..|.+       +||||+..|.++++++|+++|+.++.+|..|.||||.|+
T Consensus        75 Plhia~s~g~~evVk~Ll~r~~advna~tn~G~T-------~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAA  147 (226)
T KOG4412|consen   75 PLHIAASNGNDEVVKELLNRSGADVNATTNGGQT-------CLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAA  147 (226)
T ss_pred             hhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcc-------eehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHH
Confidence            34556667788889999988 9999998876666       999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          240 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       240 ~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      .-|.++++++|+..|+.+|.+|..|+||||.|...|+.+...+|+++||+++..|+
T Consensus       148 avGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edk  203 (226)
T KOG4412|consen  148 AVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDK  203 (226)
T ss_pred             hccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccc
Confidence            99999999999999999999999999999999889999999999999999998875

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.86  E-value=3e-21  Score=140.98  Aligned_cols=89  Identities=28%  Similarity=0.419  Sum_probs=83.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHH
Q 022481          202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQ  281 (296)
Q Consensus       202 Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~  281 (296)
                      ||+|++.|+++++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999998886    899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCC
Q 022481          282 KMEEDKNNVGSTT  294 (296)
Q Consensus       282 ~Ll~~gadi~~~n  294 (296)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.85  E-value=4.4e-21  Score=156.62  Aligned_cols=116  Identities=21%  Similarity=0.173  Sum_probs=104.6

Q ss_pred             CcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHH---HHHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHHH
Q 022481          173 NFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAA---AVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAF  248 (296)
Q Consensus       173 ~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~---~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g~~~iv~  248 (296)
                      ++++|+..|..++..+..+++       +||+|+..|+.+   ++++|++.|+++|.+| ..|.||||+|+..++.++++
T Consensus        39 ~~~~l~~~g~~~~~~d~~g~t-------~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~  111 (166)
T PHA02743         39 VAPFISGDGHLLHRYDHHGRQ-------CTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAE  111 (166)
T ss_pred             HHHHHhhcchhhhccCCCCCc-------HHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHH
Confidence            345677888888877777666       999999998765   4899999999999998 58999999999999999999


Q ss_pred             HHHH-CCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          249 ILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       249 ~LL~-~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +|++ .|++++.+|..|+||||+|+..++.+++++|+++|++++.++.
T Consensus       112 ~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743        112 WLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             HHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            9995 7999999999999999999999999999999999999998875

>PHA02791 ankyrin-like protein; Provisional

Probab=99.85  E-value=3.5e-21  Score=169.54  Aligned_cols=119  Identities=15%  Similarity=0.063  Sum_probs=77.9

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g~~~iv  247 (296)
                      +...++++|+..|++++..+..++      .||||+|+..|+.++|++||+++.+.  .| ..|.||||+|+.+|+.+++
T Consensus       105 g~~eivk~Ll~~gadin~~~~~g~------~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv  176 (284)
T PHA02791        105 GNMQTVKLFVKKNWRLMFYGKTGW------KTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMM  176 (284)
T ss_pred             CCHHHHHHHHHCCCCcCccCCCCC------cHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHH
Confidence            344444555555554444333322      13666666666666666666654332  12 2467788888888888888


Q ss_pred             HHHHHCCCCCCccCCCCCCH-hhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          248 FILMESGANMDCKNAQGESP-LDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       248 ~~LL~~ga~~~~~d~~g~Tp-L~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++||++||++|.+|..|.|| ||+|+..|+.++|++|+++||+++++|.
T Consensus       177 ~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        177 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             HHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            88888888888887777766 8888888888888888888888877763

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.85  E-value=1.7e-21  Score=180.23  Aligned_cols=125  Identities=19%  Similarity=0.206  Sum_probs=77.2

Q ss_pred             CCCCCCCCcCcccccCC-CCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHc
Q 022481          164 RSRGSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALF  241 (296)
Q Consensus       164 ~~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~  241 (296)
                      .+..-+..+.++.|++. |..++..|..+-+       +||||+.+++++++++||++|+++|..+ ..+.||||||+++
T Consensus        50 ~A~q~G~l~~v~~lve~~g~~v~~~D~~g~t-------lLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   50 KATQYGELETVKELVESEGESVNNPDREGVT-------LLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hHhhcchHHHHHHHHhhcCcCCCCCCcCCcc-------ceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            33444444555566655 6666655554444       6666666666666666666666666665 4456666666666


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |+..+|.+||++|||++++|.+|.||||+|+..|+.-+|-+||.+|+|+|.+|+
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~  176 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN  176 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC
Confidence            666666666666666666666666666666666666666666666666666654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.84  E-value=3.9e-21  Score=177.87  Aligned_cols=122  Identities=25%  Similarity=0.296  Sum_probs=112.8

Q ss_pred             CCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 022481          167 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  246 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i  246 (296)
                      -....+++++|++.|+++|.......      .||||||+++|++.+|++|+++|||++.+|.+|.|+||+|+++|++-+
T Consensus        87 iNNrl~v~r~li~~gadvn~~gG~l~------stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~  160 (600)
T KOG0509|consen   87 INNRLDVARYLISHGADVNAIGGVLG------STPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTAL  160 (600)
T ss_pred             HcCcHHHHHHHHHcCCCccccCCCCC------CCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHH
Confidence            34566789999999999999874322      259999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          247 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       247 v~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      |-+||.+|+|+|.+|.+|+||||+|+.+|....++.||..|++++.+|
T Consensus       161 vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d  208 (600)
T KOG0509|consen  161 VAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTD  208 (600)
T ss_pred             HHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccc
Confidence            999999999999999999999999999999888999999999998887

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.83  E-value=2.3e-20  Score=157.99  Aligned_cols=120  Identities=17%  Similarity=0.158  Sum_probs=106.9

Q ss_pred             CCCcCcccccCCCCCCCCCCC-CCccccccChHHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH--cC
Q 022481          169 TSNSNFSSIFNPGQVTNGATD-KPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL--FN  242 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~-~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~--~g  242 (296)
                      +...++++|++.|++++..+. .+.+       |||+|+..   ++.+++++|+++|+++|.+|..|.||||+|+.  .+
T Consensus        64 ~~~eiv~~Ll~~gadvn~~~~~~g~T-------pLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~  136 (209)
T PHA02859         64 VNVEILKFLIENGADVNFKTRDNNLS-------ALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNV  136 (209)
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCC-------HHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccC
Confidence            356789999999999998763 4555       99998764   57999999999999999999999999999976  46


Q ss_pred             CHHHHHHHHHCCCCCCccCCCCCCHhhH-hhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          243 RTDIAFILMESGANMDCKNAQGESPLDC-APVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       243 ~~~iv~~LL~~ga~~~~~d~~g~TpL~~-A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +.+++++|+++|++++.+|..|.||||. |+..++.+++++|+++|++++.+|.
T Consensus       137 ~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~  190 (209)
T PHA02859        137 RINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNK  190 (209)
T ss_pred             CHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Confidence            8999999999999999999999999995 5668899999999999999999875

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=2.1e-21  Score=173.61  Aligned_cols=124  Identities=21%  Similarity=0.286  Sum_probs=115.5

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      ...++..+...+++.|+..|+.+|.......+       ||..||.-|++++||+|+++|+|++..|..|.|.||+|+..
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt-------PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~yk  160 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDTTRTNST-------PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYK  160 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccccccCCc-------cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeecc
Confidence            44556677888999999999999987766555       99999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGS  292 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~  292 (296)
                      |+.+|+++||+.|||+|.++..|+|+||.++..|+.+++++|+.+|+.++.
T Consensus       161 Gh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~  211 (615)
T KOG0508|consen  161 GHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV  211 (615)
T ss_pred             CchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee
Confidence            999999999999999999999999999999999999999999999997764

>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.83  E-value=1.1e-21  Score=136.30  Aligned_cols=65  Identities=42%  Similarity=0.847  Sum_probs=49.5

Q ss_pred             CCCCCccccccccccccccccccccccccccceEcCCCCCCceecC--CCCCCCceeccccchhhhc
Q 022481            4 EPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLP--QFGIHTNVRVCADCFNSSS   68 (296)
Q Consensus         4 ~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~--~~~~~~~~rvC~~C~~~~~   68 (296)
                      .|+++.++..|+.|+++|++|+||||||.||++||..|+.++..++  ..+..+++|||+.||..++
T Consensus         2 ~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~   68 (69)
T PF01363_consen    2 HWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ   68 (69)
T ss_dssp             -SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred             CcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence            6999999999999999999999999999999999999999999888  5666789999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....

>PHA02791 ankyrin-like protein; Provisional

Probab=99.83  E-value=2.9e-20  Score=163.75  Aligned_cols=116  Identities=16%  Similarity=0.127  Sum_probs=81.9

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      ++..+...++++|+..|++++..+         +.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.
T Consensus        37 Aa~~g~~eiv~~Ll~~ga~~n~~d---------~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~  107 (284)
T PHA02791         37 AIADNNVRLVCTLLNAGALKNLLE---------NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNM  107 (284)
T ss_pred             HHHcCCHHHHHHHHHCcCCCcCCC---------CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            334455566677777776665432         13477777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHCCCCCCccCCCCC-CHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          245 DIAFILMESGANMDCKNAQGE-SPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~-TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      +++++|+++|++++.++..|+ ||||+|+..|+.+++++|+++|++
T Consensus       108 eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~  153 (284)
T PHA02791        108 QTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS  153 (284)
T ss_pred             HHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc
Confidence            777777777777777777664 677777777777777777777654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.82  E-value=2.9e-20  Score=151.56  Aligned_cols=106  Identities=23%  Similarity=0.181  Sum_probs=98.1

Q ss_pred             CCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC
Q 022481          182 QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN  261 (296)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d  261 (296)
                      ..+|..|..|       -|||+||+..|++++|++||+.|+|++...++..|+|++|...|.++||++||+++.|+|..|
T Consensus       151 n~VN~~De~G-------fTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyD  223 (296)
T KOG0502|consen  151 NKVNACDEFG-------FTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYD  223 (296)
T ss_pred             ccccCccccC-------chHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceec
Confidence            3445555544       459999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          262 AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       262 ~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      ++|-|||-+|++.|+.++++.||+.|||++..+
T Consensus       224 wNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~  256 (296)
T KOG0502|consen  224 WNGGTPLLYAVRGNHVKCVESLLNSGADVTQED  256 (296)
T ss_pred             cCCCceeeeeecCChHHHHHHHHhcCCCccccc
Confidence            999999999999999999999999999998765

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.82  E-value=4.2e-20  Score=175.16  Aligned_cols=116  Identities=26%  Similarity=0.300  Sum_probs=99.1

Q ss_pred             cCcccccCCCCCCCCCCCC-CccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 022481          172 SNFSSIFNPGQVTNGATDK-PRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL  250 (296)
Q Consensus       172 ~~~~~ll~~g~~~~~~~~~-~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~L  250 (296)
                      .++++|++.|++++..+.. +.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+..++.+++++|
T Consensus       148 ~iv~~Ll~~gadin~~~~~~g~t-------pLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~L  220 (477)
T PHA02878        148 EITKLLLSYGADINMKDRHKGNT-------ALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHIL  220 (477)
T ss_pred             HHHHHHHHcCCCCCccCCCCCCC-------HHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence            3678888888888887766 555       89999998999999999888888888888889999999888888999999


Q ss_pred             HHCCCCCCccCCCCCCHhhHhhhc-CcHHHHHHHHHcCCCCCCCC
Q 022481          251 MESGANMDCKNAQGESPLDCAPVT-LQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       251 L~~ga~~~~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~gadi~~~n  294 (296)
                      +++|++++.+|..|+||||+|+.. ++.+++++|+++|++++.++
T Consensus       221 l~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~  265 (477)
T PHA02878        221 LENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS  265 (477)
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence            988999988888899999988865 67888888888888888765

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.81  E-value=7.1e-20  Score=170.51  Aligned_cols=117  Identities=17%  Similarity=0.143  Sum_probs=56.7

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF  248 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~  248 (296)
                      +..+++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus       113 ~~~~iv~~Ll~~gad~~~~~~~g~t-------pLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~  185 (413)
T PHA02875        113 KKLDIMKLLIARGADPDIPNTDKFS-------PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICK  185 (413)
T ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            3344444444444444444433333       555555555555555555555555555555555555555555555555


Q ss_pred             HHHHCCCCCCccCCCCC-CHhhHhhhcCcHHHHHHHHHcCCCCCC
Q 022481          249 ILMESGANMDCKNAQGE-SPLDCAPVTLQYKMRQKMEEDKNNVGS  292 (296)
Q Consensus       249 ~LL~~ga~~~~~d~~g~-TpL~~A~~~g~~~iv~~Ll~~gadi~~  292 (296)
                      +|+++|++++..+..|. ||||+|+..|+.+++++|+++|+|+++
T Consensus       186 ~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        186 MLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             HHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch
Confidence            55555555554444432 444445555555555555555555443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.81  E-value=6.2e-20  Score=184.21  Aligned_cols=129  Identities=19%  Similarity=0.188  Sum_probs=114.2

Q ss_pred             ccccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 022481          160 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA  239 (296)
Q Consensus       160 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~  239 (296)
                      .+...++..++...++.|+..|+++|..+..+.+       |||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+
T Consensus       527 ~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~T-------pLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        527 SNLLTVASTGNAALLEELLKAKLDPDIGDSKGRT-------PLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHH
Confidence            3345556677888899999999999998887776       999999999999999999999999999999999988665


Q ss_pred             H-------------------------------cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCC
Q 022481          240 L-------------------------------FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKN  288 (296)
Q Consensus       240 ~-------------------------------~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  288 (296)
                      .                               .|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++|+++||
T Consensus       600 ~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        600 SAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             HhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            4                               455566777888999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 022481          289 NVGSTTS  295 (296)
Q Consensus       289 di~~~n~  295 (296)
                      |++..|+
T Consensus       680 dv~~~~~  686 (823)
T PLN03192        680 DVDKANT  686 (823)
T ss_pred             CCCCCCC
Confidence            9998874

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1.7e-19  Score=167.96  Aligned_cols=128  Identities=16%  Similarity=0.179  Sum_probs=114.5

Q ss_pred             cccCCCCCCCCcCcccccCCCCCCCCC-CCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 022481          161 NTARSRGSTSNSNFSSIFNPGQVTNGA-TDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA  239 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~-~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~  239 (296)
                      +...+...+....++.|+..|...+.. +..       |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus        71 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~  143 (413)
T PHA02875         71 ELHDAVEEGDVKAVEELLDLGKFADDVFYKD-------GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAV  143 (413)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccccccCC-------CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Confidence            345556667888899999998766543 333       445999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          240 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       240 ~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       144 ~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~  199 (413)
T PHA02875        144 MMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGK  199 (413)
T ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999987653

>PHA03095 ankyrin-like protein; Provisional

Probab=99.80  E-value=2.4e-19  Score=169.53  Aligned_cols=123  Identities=19%  Similarity=0.263  Sum_probs=104.3

Q ss_pred             CCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcC---CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481          166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG---DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  242 (296)
Q Consensus       166 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g---~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g  242 (296)
                      ......++++.|++.|++++..+..+.+       |||+|+..+   +.+++++|++.|+++|.+|..|+||||+|+..+
T Consensus        22 ~~~~~~~~v~~Ll~~ga~vn~~~~~g~t-------~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~   94 (471)
T PHA03095         22 ASNVTVEEVRRLLAAGADVNFRGEYGKT-------PLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNA   94 (471)
T ss_pred             CCCCCHHHHHHHHHcCCCcccCCCCCCC-------HHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            3445566788888999988887776666       999999888   889999999999999999999999999999998


Q ss_pred             -CHHHHHHHHHCCCCCCccCCCCCCHhhHhh--hcCcHHHHHHHHHcCCCCCCCCC
Q 022481          243 -RTDIAFILMESGANMDCKNAQGESPLDCAP--VTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       243 -~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~--~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                       +.+++++|+++|++++.+|..|+||||+|+  ..++.+++++|+++|++++.+|.
T Consensus        95 ~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~  150 (471)
T PHA03095         95 TTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL  150 (471)
T ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC
Confidence             588999999999999999999999999988  55678899999999999887664

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.80  E-value=3.7e-19  Score=166.78  Aligned_cols=118  Identities=29%  Similarity=0.359  Sum_probs=108.4

Q ss_pred             CcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 022481          171 NSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL  250 (296)
Q Consensus       171 ~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~L  250 (296)
                      ...++.|+..|++++..+..+.+       |||+|+..|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|
T Consensus       104 ~~~i~~ll~~g~d~n~~~~~g~T-------~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~L  176 (434)
T PHA02874        104 KDMIKTILDCGIDVNIKDAELKT-------FLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL  176 (434)
T ss_pred             HHHHHHHHHCcCCCCCCCCCCcc-------HHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHH
Confidence            35677888888888887766665       99999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          251 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       251 L~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +++|++++..|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus       177 l~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~  221 (434)
T PHA02874        177 LEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK  221 (434)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCC
Confidence            999999999999999999999999999999999999999887653

>PHA02798 ankyrin-like protein; Provisional

Probab=99.79  E-value=2.4e-19  Score=170.51  Aligned_cols=120  Identities=19%  Similarity=0.205  Sum_probs=109.8

Q ss_pred             CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHc-----CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481          168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN-----GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  242 (296)
Q Consensus       168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~-----g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g  242 (296)
                      .....++++|++.|+++|..+..+.+       |||+|+.+     +..+++++|+++|+|+|.+|..|+||||+|+..+
T Consensus        48 ~~~~~iv~~Ll~~Gadvn~~d~~g~T-------pL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~  120 (489)
T PHA02798         48 SPSTDIVKLFINLGANVNGLDNEYST-------PLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNG  120 (489)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCC-------hHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcC
Confidence            34667899999999999998877776       99998864     6789999999999999999999999999999875


Q ss_pred             ---CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc---HHHHHHHHHcCCCCCCCC
Q 022481          243 ---RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ---YKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       243 ---~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~---~~iv~~Ll~~gadi~~~n  294 (296)
                         +.+++++|+++||+++.+|..|.||||+|+..++   .+++++|+++|+|++..+
T Consensus       121 ~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~  178 (489)
T PHA02798        121 YINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN  178 (489)
T ss_pred             CcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCccccc
Confidence               7899999999999999999999999999999887   999999999999998765

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.7e-19  Score=169.71  Aligned_cols=126  Identities=20%  Similarity=0.238  Sum_probs=114.0

Q ss_pred             cccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q 022481          161 NTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL  240 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~  240 (296)
                      +..-++..+...++++|+..|++++..+..+.+       |||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus       171 pLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~t-------pLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~  243 (477)
T PHA02878        171 ALHYATENKDQRLTELLLSYGANVNIPDKTNNS-------PLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVG  243 (477)
T ss_pred             HHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            344455567788899999999999988877776       9999999999999999999999999999999999999997


Q ss_pred             c-CCHHHHHHHHHCCCCCCccCC-CCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          241 F-NRTDIAFILMESGANMDCKNA-QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       241 ~-g~~~iv~~LL~~ga~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      . ++.+++++|+++|+++|.++. .|.||||+|  .++.+++++|+++|||+|+.|.
T Consensus       244 ~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~  298 (477)
T PHA02878        244 YCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNS  298 (477)
T ss_pred             hcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCC
Confidence            5 789999999999999999986 799999999  5678999999999999998874

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=2.5e-19  Score=151.67  Aligned_cols=118  Identities=24%  Similarity=0.211  Sum_probs=105.5

Q ss_pred             CcCcccccC-CCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q 022481          171 NSNFSSIFN-PGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFI  249 (296)
Q Consensus       171 ~~~~~~ll~-~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~  249 (296)
                      .-.+++-|+ ...+.|.-|+.+-.       |||||++.|+..+|+.||.+|+.+|..+....||||+|+..||.++|+.
T Consensus        13 a~qvrlwld~tehdln~gddhgfs-------plhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen   13 AFQVRLWLDDTEHDLNVGDDHGFS-------PLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             eEEEEEEecCcccccccccccCcc-------hhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHH
Confidence            333444443 44566666666666       9999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          250 LMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       250 LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ||++.+|+|+.|..|+||||||+..|+..+.+-|+..||.+++.|+
T Consensus        86 ll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk  131 (448)
T KOG0195|consen   86 LLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNK  131 (448)
T ss_pred             HHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeeccc
Confidence            9999999999999999999999999999999999999999998775

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.2e-19  Score=151.97  Aligned_cols=124  Identities=15%  Similarity=0.187  Sum_probs=102.8

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcC--CHHHHHHHHHcCCCCcccC-CCCCcHHHHH
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG--DAAAVKKLLSEGVDANFCD-KQGMSLLHLA  238 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g--~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A  238 (296)
                      ...+...+....++.|+..   .+..+..+       .||||+|+..+  +.+++++||++|+++|.++ ..|+||||+|
T Consensus        25 L~~A~~~~~~~~vk~Li~~---~n~~~~~g-------~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         25 LFYYVEKDDIEGVKKWIKF---VNDCNDLY-------ETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             HHHHHHhCcHHHHHHHHHh---hhccCccC-------CCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            3444455666777777754   33444444       45999999854  8999999999999999997 5899999998


Q ss_pred             HHc---CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhh--cCcHHHHHHHHHcCCCCCCCCC
Q 022481          239 ALF---NRTDIAFILMESGANMDCKNAQGESPLDCAPV--TLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       239 ~~~---g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +..   ++.+++++|+++|+++|.+|..|.||||+|+.  .++.+++++|+++|++++.+|.
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~  156 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF  156 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence            764   47999999999999999999999999999876  4689999999999999998874

>PHA02946 ankyin-like protein; Provisional

Probab=99.79  E-value=5.2e-19  Score=165.82  Aligned_cols=118  Identities=21%  Similarity=0.218  Sum_probs=98.2

Q ss_pred             CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHHH
Q 022481          170 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN--RTDIA  247 (296)
Q Consensus       170 ~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g--~~~iv  247 (296)
                      ...+++.|++.|+++|..+..+.+       |||+|+..|+.++|++||++|+++|.+|..|.||||+|+..+  ..+++
T Consensus        51 ~~~iv~~Ll~~Gadvn~~d~~G~T-------pLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v  123 (446)
T PHA02946         51 DERFVEELLHRGYSPNETDDDGNY-------PLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERI  123 (446)
T ss_pred             CHHHHHHHHHCcCCCCccCCCCCC-------HHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHH
Confidence            345788999999999998877776       999999999999999999999999999999999999998765  47889


Q ss_pred             HHHHHCCCCCCc-cCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          248 FILMESGANMDC-KNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       248 ~~LL~~ga~~~~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++|+++|++++. .|..|.|||| |+..++.+++++|+++|++++.+|+
T Consensus       124 ~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~  171 (446)
T PHA02946        124 NLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDK  171 (446)
T ss_pred             HHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCC
Confidence            999999998885 5777888886 4455677777777777777776653

>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1

Probab=99.79  E-value=5.3e-20  Score=127.40  Aligned_cols=66  Identities=42%  Similarity=0.828  Sum_probs=62.6

Q ss_pred             CCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481            3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   68 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   68 (296)
                      ..|+++.++..|+.|+++|++++||||||.||.|||..|+.+++.++..+..+++|||+.||+.++
T Consensus         2 ~~W~~~~~~~~C~~C~~~F~~~~rk~hCr~CG~i~C~~C~~~~~~~~~~~~~~p~rvC~~C~~~~~   67 (68)
T smart00064        2 PHWIPDEEVSNCMGCGKEFNLTKRRHHCRNCGRIFCSKCSSKKAPLPKLGIERPVRVCDDCYENLS   67 (68)
T ss_pred             CCCcCCCCCCcCcccCccccCcccccccccCCCCcChHHcCCeeecCccCCCCCcEECHHHHHHhc
Confidence            579999999999999999999999999999999999999999999998887789999999999875

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=1.5e-18  Score=153.13  Aligned_cols=118  Identities=17%  Similarity=0.160  Sum_probs=76.4

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHcCC
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFNR  243 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~-d~~g~TpLh~A~~~g~  243 (296)
                      +...+..++++.|++.|++++..+...   ...|.||||+|+..|+.+++++|+++|+++|.. +..|.||||+|+..++
T Consensus        40 A~~~~~~eivk~LL~~GAdiN~~~~~s---d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~  116 (300)
T PHA02884         40 SIKFHYTDIIDAILKLGADPEAPFPLS---ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGC  116 (300)
T ss_pred             HHHcCCHHHHHHHHHCCCCccccCccc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCC
Confidence            334455566777777777776653200   012334777777777777777777777777764 3457777777777777


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHH
Q 022481          244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE  285 (296)
Q Consensus       244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  285 (296)
                      .+++++|+++|++++.+|..|.||||+|+..++.+++.++..
T Consensus       117 ~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~  158 (300)
T PHA02884        117 LKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD  158 (300)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC
Confidence            777777777777777777777777777777666666655543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=3.6e-19  Score=143.51  Aligned_cols=96  Identities=21%  Similarity=0.169  Sum_probs=88.7

Q ss_pred             cChHHHHHHHHcCCH---HHHHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHhhHh
Q 022481          197 VNGEGLRDAIKNGDA---AAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCA  271 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~---~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g~~~iv~~LL~~-ga~~~~~d~~g~TpL~~A  271 (296)
                      .|.|+||+|+..|+.   +++++|++.|+++|.+| ..|+||||+|+..++.+++++|+.+ |++++.+|..|+||||+|
T Consensus        54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A  133 (154)
T PHA02736         54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA  133 (154)
T ss_pred             CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHH
Confidence            355699999999987   46889999999999998 4899999999999999999999985 999999999999999999


Q ss_pred             hhcCcHHHHHHHHHcCCCCCC
Q 022481          272 PVTLQYKMRQKMEEDKNNVGS  292 (296)
Q Consensus       272 ~~~g~~~iv~~Ll~~gadi~~  292 (296)
                      +..|+.+++++|+++|++.++
T Consensus       134 ~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736        134 CERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             HHcCCHHHHHHHHHcCCCCCC
Confidence            999999999999999999864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.78  E-value=4.7e-19  Score=172.60  Aligned_cols=120  Identities=17%  Similarity=0.227  Sum_probs=106.9

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCC--HHHHHHHHHcCCCCcccCCCCCcHHHHH--------
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD--AAAVKKLLSEGVDANFCDKQGMSLLHLA--------  238 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~--~~~v~~Ll~~gadvn~~d~~g~TpLh~A--------  238 (296)
                      +...++++|++.|++++..+..+.+       |||+|+..|+  .++|++||++|+++|.+|..|+||||+|        
T Consensus       190 ~~~eIVklLLe~GADVN~kD~~G~T-------PLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~  262 (764)
T PHA02716        190 VDIDILEWLCNNGVNVNLQNNHLIT-------PLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNIN  262 (764)
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccC
Confidence            3457899999999999998877776       9999999995  4899999999999999999999999975        


Q ss_pred             -----------------------------HHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhh--cCcHHHHHHHHHcC
Q 022481          239 -----------------------------ALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV--TLQYKMRQKMEEDK  287 (296)
Q Consensus       239 -----------------------------~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~g  287 (296)
                                                   +..|+.+++++||++|++++.+|..|+||||+|+.  .++.+++++|+++|
T Consensus       263 ~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G  342 (764)
T PHA02716        263 PEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYG  342 (764)
T ss_pred             HHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcC
Confidence                                         34578899999999999999999999999999764  46789999999999


Q ss_pred             CCCCCCCC
Q 022481          288 NNVGSTTS  295 (296)
Q Consensus       288 adi~~~n~  295 (296)
                      ++++.+|+
T Consensus       343 ADIN~kD~  350 (764)
T PHA02716        343 NDLNEPDN  350 (764)
T ss_pred             CCCccCCC
Confidence            99998875

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.78  E-value=7.5e-19  Score=164.74  Aligned_cols=129  Identities=21%  Similarity=0.209  Sum_probs=115.9

Q ss_pred             ccccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCC-----------------
Q 022481          160 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGV-----------------  222 (296)
Q Consensus       160 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~ga-----------------  222 (296)
                      ++...+...+...++++|+..|++++..+..+.+       |||+|+..|+.+++++|+++|+                 
T Consensus        37 tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t-------~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~  109 (434)
T PHA02874         37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPH-------PLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKT  109 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHH
Confidence            4455566678889999999999999988776665       9999999999999999987764                 


Q ss_pred             ------CCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          223 ------DANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       223 ------dvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                            +++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|.
T Consensus       110 ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~  188 (434)
T PHA02874        110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN  188 (434)
T ss_pred             HHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence                  5677889999999999999999999999999999999999999999999999999999999999999988763

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.78  E-value=6.8e-19  Score=166.90  Aligned_cols=118  Identities=21%  Similarity=0.257  Sum_probs=80.5

Q ss_pred             CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC------CcHHHHHHHcCC
Q 022481          170 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG------MSLLHLAALFNR  243 (296)
Q Consensus       170 ~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g------~TpLh~A~~~g~  243 (296)
                      ...+++.|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..+..|      .||||+|+..++
T Consensus       155 ~~~iv~~Ll~~g~din~~d~~g~t-------pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~  227 (480)
T PHA03100        155 DLKILKLLIDKGVDINAKNRYGYT-------PLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE  227 (480)
T ss_pred             hHHHHHHHHHCCCCcccccCCCCC-------HHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc
Confidence            556677777777777776655444       6777777776666666666666666666666      666666666666


Q ss_pred             --HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          244 --TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       244 --~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                        .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|
T Consensus       228 ~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d  280 (480)
T PHA03100        228 ITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN  280 (480)
T ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence              666666666666666666666677777666666666776666666666654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=9.5e-19  Score=137.83  Aligned_cols=93  Identities=28%  Similarity=0.317  Sum_probs=65.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHH
Q 022481          201 GLRDAIKNGDAAAVKKLLSEGVD-ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM  279 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~gad-vn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~i  279 (296)
                      -+.||+..+.+..|+.||+..++ +|.+|.+|+||||.|+.+|+.+||+.||..||+++++...||||||-|+..++.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            35667777777777777665443 66777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCCCCCC
Q 022481          280 RQKMEEDKNNVGST  293 (296)
Q Consensus       280 v~~Ll~~gadi~~~  293 (296)
                      +.+||++|||||+.
T Consensus       146 a~~LLqhgaDVnA~  159 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQ  159 (228)
T ss_pred             HHHHHhccCccccc
Confidence            77777777777664

>PHA02741 hypothetical protein; Provisional

Probab=99.77  E-value=2.2e-18  Score=141.11  Aligned_cols=88  Identities=27%  Similarity=0.285  Sum_probs=45.0

Q ss_pred             HHHHHHHcCC----HHHHHHHHHcCCCCcccCC-CCCcHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCCHhhHhhhc
Q 022481          201 GLRDAIKNGD----AAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILME-SGANMDCKNAQGESPLDCAPVT  274 (296)
Q Consensus       201 ~Lh~A~~~g~----~~~v~~Ll~~gadvn~~d~-~g~TpLh~A~~~g~~~iv~~LL~-~ga~~~~~d~~g~TpL~~A~~~  274 (296)
                      |||+|+..|+    .+++++|++.|+++|.++. .|+||||+|+..++.+++++||+ .|++++..|.+|+||||+|...
T Consensus        63 ~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~  142 (169)
T PHA02741         63 CIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN  142 (169)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHC
Confidence            5555555554    3445555555555555443 45555555555555555555554 2555555555555555555555


Q ss_pred             CcHHHHHHHHHcCC
Q 022481          275 LQYKMRQKMEEDKN  288 (296)
Q Consensus       275 g~~~iv~~Ll~~ga  288 (296)
                      ++.+++++|++.++
T Consensus       143 ~~~~iv~~L~~~~~  156 (169)
T PHA02741        143 EDVAMMQILREIVA  156 (169)
T ss_pred             CCHHHHHHHHHHHH
Confidence            55555555555433

>PHA02795 ankyrin-like protein; Provisional

Probab=99.77  E-value=8.2e-19  Score=160.89  Aligned_cols=129  Identities=19%  Similarity=0.076  Sum_probs=107.2

Q ss_pred             CCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481          164 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  243 (296)
Q Consensus       164 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~  243 (296)
                      .++..+...++++|+..|+..+...... .....+.+++|.|+..++.+++++|+++|+++|.+|..|.||||+|+..|+
T Consensus       155 ~A~~~~~~eIVk~Lls~Ga~~~n~~~~~-l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~  233 (437)
T PHA02795        155 RGICKKESSVVEFILNCGIPDENDVKLD-LYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGY  233 (437)
T ss_pred             HHHHcCcHHHHHHHHhcCCcccccccch-hhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCC
Confidence            3444567788889999887432221100 000124468999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcC--------cHHHHHHHHHcCCCCCCC
Q 022481          244 TDIAFILMESGANMDCKNAQGESPLDCAPVTL--------QYKMRQKMEEDKNNVGST  293 (296)
Q Consensus       244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g--------~~~iv~~Ll~~gadi~~~  293 (296)
                      .+++++|+++||+++.+|..|+||||+|+..|        +.+++++|+++|++++..
T Consensus       234 ~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~  291 (437)
T PHA02795        234 IDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCI  291 (437)
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCch
Confidence            99999999999999999999999999999988        469999999999998764

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.77  E-value=8.3e-19  Score=166.32  Aligned_cols=123  Identities=21%  Similarity=0.270  Sum_probs=112.6

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHH--HcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI--KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  242 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g  242 (296)
                      +...+...+++.|++.|++++..+..+.+       |||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~t-------pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  152 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANVNAPDNNGIT-------PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN  152 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCCCCCCCCCCc-------hhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Confidence            44556677889999999999887776666       999999  999999999999999999999999999999999999


Q ss_pred             --CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          243 --RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       243 --~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                        +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       153 ~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~  206 (480)
T PHA03100        153 KIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGD  206 (480)
T ss_pred             CChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCC
Confidence              9999999999999999999999999999999999999999999999998765

>PHA02741 hypothetical protein; Provisional

Probab=99.77  E-value=1.1e-18  Score=142.85  Aligned_cols=104  Identities=15%  Similarity=0.203  Sum_probs=94.5

Q ss_pred             CCCCCCCccccccChHHHHHHHHcCCHHHHHHH---H---HcCCCCcccCCCCCcHHHHHHHcCC----HHHHHHHHHCC
Q 022481          185 NGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKL---L---SEGVDANFCDKQGMSLLHLAALFNR----TDIAFILMESG  254 (296)
Q Consensus       185 ~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~L---l---~~gadvn~~d~~g~TpLh~A~~~g~----~~iv~~LL~~g  254 (296)
                      +..+..+.+       +||+|+..|+.+++++|   +   ..|++++.+|..|+||||+|+..|+    .+++++|+++|
T Consensus        15 ~~~~~~g~t-------~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g   87 (169)
T PHA02741         15 AEKNSEGEN-------FFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG   87 (169)
T ss_pred             hccccCCCC-------HHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            445667777       99999999999999986   6   5689999999999999999999999    58999999999


Q ss_pred             CCCCccCC-CCCCHhhHhhhcCcHHHHHHHHH-cCCCCCCCCC
Q 022481          255 ANMDCKNA-QGESPLDCAPVTLQYKMRQKMEE-DKNNVGSTTS  295 (296)
Q Consensus       255 a~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~-~gadi~~~n~  295 (296)
                      +++|.++. .|+||||+|+..++.+++++|+. .|++++.+|.
T Consensus        88 adin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~  130 (169)
T PHA02741         88 ADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA  130 (169)
T ss_pred             CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence            99999985 89999999999999999999998 5999998764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.76  E-value=2.7e-18  Score=140.14  Aligned_cols=96  Identities=18%  Similarity=0.311  Sum_probs=87.1

Q ss_pred             HHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH---HHHHHHCCCCCCccC-CCCCCHhhHh
Q 022481          200 EGLRDAIKNGDA----AAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI---AFILMESGANMDCKN-AQGESPLDCA  271 (296)
Q Consensus       200 t~Lh~A~~~g~~----~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i---v~~LL~~ga~~~~~d-~~g~TpL~~A  271 (296)
                      ++||+|++.|++    +++++|++.|++++.+|..|+||||+|+..|+.++   +++|+++|+++|.+| ..|+||||+|
T Consensus        22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A  101 (166)
T PHA02743         22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIA  101 (166)
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHH
Confidence            389999999998    56667888999999999999999999999988654   899999999999998 5899999999


Q ss_pred             hhcCcHHHHHHHHH-cCCCCCCCCC
Q 022481          272 PVTLQYKMRQKMEE-DKNNVGSTTS  295 (296)
Q Consensus       272 ~~~g~~~iv~~Ll~-~gadi~~~n~  295 (296)
                      +..++.+++++|++ .|++++.+|+
T Consensus       102 ~~~g~~~iv~~Ll~~~gad~~~~d~  126 (166)
T PHA02743        102 ASTKNYELAEWLCRQLGVNLGAINY  126 (166)
T ss_pred             HHhCCHHHHHHHHhccCCCccCcCC
Confidence            99999999999995 8999998874

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.76  E-value=2.3e-18  Score=167.78  Aligned_cols=121  Identities=17%  Similarity=0.157  Sum_probs=106.7

Q ss_pred             CCCCcCcccccCCC-CCCCCC-CCCCccccccChHHHHHHHHc--CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481          168 STSNSNFSSIFNPG-QVTNGA-TDKPRMEYEVNGEGLRDAIKN--GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  243 (296)
Q Consensus       168 ~~~~~~~~~ll~~g-~~~~~~-~~~~~~~~~~~~t~Lh~A~~~--g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~  243 (296)
                      .....++++|++.| +++|.. +..+.+       |||+|+..  ++.+++++|+++|+++|.+|..|+||||+|+..|+
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~T-------pLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~  224 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYG-------ILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGN  224 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCc-------HHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            35667899999999 999887 666665       99998654  68899999999999999999999999999999995


Q ss_pred             --HHHHHHHHHCCCCCCccCCCCCCHhhHh-------------------------------------hhcCcHHHHHHHH
Q 022481          244 --TDIAFILMESGANMDCKNAQGESPLDCA-------------------------------------PVTLQYKMRQKME  284 (296)
Q Consensus       244 --~~iv~~LL~~ga~~~~~d~~g~TpL~~A-------------------------------------~~~g~~~iv~~Ll  284 (296)
                        .+++++||++||++|.+|..|+||||+|                                     +..|+.+++++|+
T Consensus       225 ~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLL  304 (764)
T PHA02716        225 VCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFL  304 (764)
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHH
Confidence              4899999999999999999999999975                                     3457789999999


Q ss_pred             HcCCCCCCCCC
Q 022481          285 EDKNNVGSTTS  295 (296)
Q Consensus       285 ~~gadi~~~n~  295 (296)
                      ++|++++.+|.
T Consensus       305 e~GAdIN~kD~  315 (764)
T PHA02716        305 QPGVKLHYKDS  315 (764)
T ss_pred             hCCCceeccCC
Confidence            99999998764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.75  E-value=2.3e-18  Score=152.02  Aligned_cols=96  Identities=18%  Similarity=0.113  Sum_probs=90.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccC----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHhhHhhhc
Q 022481          200 EGLRDAIKNGDAAAVKKLLSEGVDANFCD----KQGMSLLHLAALFNRTDIAFILMESGANMDCKN-AQGESPLDCAPVT  274 (296)
Q Consensus       200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d----~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d-~~g~TpL~~A~~~  274 (296)
                      ++||+|+..|+.+++++|+++|+++|.++    ..|.||||+|+..++.+++++|+++||++|.++ ..|.||||+|+..
T Consensus        35 ~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~  114 (300)
T PHA02884         35 NILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLH  114 (300)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHc
Confidence            48999999999999999999999999974    589999999999999999999999999999964 5799999999999


Q ss_pred             CcHHHHHHHHHcCCCCCCCCC
Q 022481          275 LQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       275 g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++.+++++|+++|++++.+|.
T Consensus       115 ~~~eivklLL~~GAdin~kd~  135 (300)
T PHA02884        115 GCLKCLEILLSYGADINIQTN  135 (300)
T ss_pred             CCHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999998864

>PHA03095 ankyrin-like protein; Provisional

Probab=99.75  E-value=2.5e-18  Score=162.66  Aligned_cols=116  Identities=17%  Similarity=0.217  Sum_probs=100.4

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCH--HHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDA--AAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  246 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~--~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i  246 (296)
                      +...+++.|+..|++++..+..+.+       |||+|+..|+.  .+++.|++.|+++|.+|..|+||||+|+..|+.++
T Consensus       200 ~~~~i~~~Ll~~g~~~~~~d~~g~t-------pLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~  272 (471)
T PHA03095        200 PRARIVRELIRAGCDPAATDMLGNT-------PLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRA  272 (471)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            3456677888888888888777666       99999988865  57888888999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481          247 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  291 (296)
Q Consensus       247 v~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~  291 (296)
                      +++||++||+++.+|.+|+||||+|+..|+.+++++|++++++++
T Consensus       273 v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        273 CRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999999999888774

>PHA02795 ankyrin-like protein; Provisional

Probab=99.75  E-value=5.2e-18  Score=155.65  Aligned_cols=119  Identities=13%  Similarity=0.015  Sum_probs=106.2

Q ss_pred             CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC------CCCCcHHHHHHHc
Q 022481          168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD------KQGMSLLHLAALF  241 (296)
Q Consensus       168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d------~~g~TpLh~A~~~  241 (296)
                      .+..+++++|+..|++++..+.  .       |+||+|+..++.+++++|+.+|++.+...      ..+.|++|.|+..
T Consensus       128 ~n~~eiV~~LI~~GADIn~~~~--~-------t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~  198 (437)
T PHA02795        128 YVEIDIVDFMVDHGAVIYKIEC--L-------NAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEP  198 (437)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCC--C-------CHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhc
Confidence            4677889999999999987432  3       49999999999999999999998543222      3488999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++.+++++|+++||++|.+|..|.||||+|+..|+.+++++|+++||+++++|+
T Consensus       199 ~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~  252 (437)
T PHA02795        199 TVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMS  252 (437)
T ss_pred             CHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            999999999999999999999999999999999999999999999999999875

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.74  E-value=4.8e-18  Score=133.89  Aligned_cols=120  Identities=18%  Similarity=0.220  Sum_probs=100.3

Q ss_pred             CCCcCcccccCC-CCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481          169 TSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       169 ~~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv  247 (296)
                      .....|+.||.. ...+|.+|..+.+       |||.|+++|+.++|+.|+..|++++.+...||||||-|+.-++.+++
T Consensus        74 nrl~eV~~lL~e~an~vNtrD~D~YT-------pLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va  146 (228)
T KOG0512|consen   74 NRLTEVQRLLSEKANHVNTRDEDEYT-------PLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVA  146 (228)
T ss_pred             ccHHHHHHHHHhcccccccccccccc-------HHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHH
Confidence            344456666654 4557777777666       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCccCCCCCCHhhHhhhcCc-HHHHHHHHH-cCCCCCCCCC
Q 022481          248 FILMESGANMDCKNAQGESPLDCAPVTLQ-YKMRQKMEE-DKNNVGSTTS  295 (296)
Q Consensus       248 ~~LL~~ga~~~~~d~~g~TpL~~A~~~g~-~~iv~~Ll~-~gadi~~~n~  295 (296)
                      .+||++|||||+.....+||||+|+...+ ...+++||. .+++...+++
T Consensus       147 ~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn  196 (228)
T KOG0512|consen  147 GRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN  196 (228)
T ss_pred             HHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcC
Confidence            99999999999999999999999998665 445666654 4666665554

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.74  E-value=7.4e-18  Score=160.50  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=105.8

Q ss_pred             CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHc---CCHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc--CC
Q 022481          170 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDA-NFCDKQGMSLLHLAALF--NR  243 (296)
Q Consensus       170 ~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~gadv-n~~d~~g~TpLh~A~~~--g~  243 (296)
                      ...++++|++.|+++|..+..|.+       |||.|+..   |+.+++++|+++|+|+ +.+|..|+||||+|+..  ++
T Consensus        87 ~~~iv~~Ll~~Gadin~~d~~g~t-------pL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~  159 (494)
T PHA02989         87 IKKIVKLLLKFGADINLKTFNGVS-------PIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVK  159 (494)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCc-------HHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCC
Confidence            346789999999999998877766       99988765   6899999999999999 89999999999998764  68


Q ss_pred             HHHHHHHHHCCCCCCc-cCCCCCCHhhHhhhc----CcHHHHHHHHHcCCCCCCCCC
Q 022481          244 TDIAFILMESGANMDC-KNAQGESPLDCAPVT----LQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       244 ~~iv~~LL~~ga~~~~-~d~~g~TpL~~A~~~----g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      .+++++||++|++++. .+..|.||||+|+..    ++.+++++|+++|++++..|.
T Consensus       160 ~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~  216 (494)
T PHA02989        160 KDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNN  216 (494)
T ss_pred             HHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCC
Confidence            9999999999999998 688999999998765    489999999999999998763

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.74  E-value=7.7e-18  Score=166.35  Aligned_cols=119  Identities=17%  Similarity=0.183  Sum_probs=104.4

Q ss_pred             CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC-HHHHH
Q 022481          170 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-TDIAF  248 (296)
Q Consensus       170 ~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~-~~iv~  248 (296)
                      ...++.+|+..|++++..+..+.+       |||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..+++
T Consensus       354 ~~~iv~lLl~~gadin~~d~~G~T-------pLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk  426 (682)
T PHA02876        354 NKDIVITLLELGANVNARDYCDKT-------PIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVK  426 (682)
T ss_pred             cHHHHHHHHHcCCCCccCCCCCCC-------HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHH
Confidence            345566777888888887766665       9999999999999999999999999999999999999987665 56789


Q ss_pred             HHHHCCCCCCccCCCCCCHhhHhhhcC-cHHHHHHHHHcCCCCCCCCC
Q 022481          249 ILMESGANMDCKNAQGESPLDCAPVTL-QYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       249 ~LL~~ga~~~~~d~~g~TpL~~A~~~g-~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +|+++|+++|.+|..|+||||+|+..| +.+++++|+++|+++|.+|.
T Consensus       427 ~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~  474 (682)
T PHA02876        427 TLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINI  474 (682)
T ss_pred             HHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999999999999876 68999999999999998874

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.74  E-value=8.5e-18  Score=160.11  Aligned_cols=120  Identities=14%  Similarity=0.160  Sum_probs=99.5

Q ss_pred             CCCcCcccccCCCCCC-CCCCCCCccccccChHHHHHHHHc--CCHHHHHHHHHcCCCCcc-cCCCCCcHHHHHHHcC--
Q 022481          169 TSNSNFSSIFNPGQVT-NGATDKPRMEYEVNGEGLRDAIKN--GDAAAVKKLLSEGVDANF-CDKQGMSLLHLAALFN--  242 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~-~~~~~~~~~~~~~~~t~Lh~A~~~--g~~~~v~~Ll~~gadvn~-~d~~g~TpLh~A~~~g--  242 (296)
                      +..+++++|++.|+++ +..+..|.+       |||+|+..  ++.++|++|+++|++++. .+..|.||||+|+..+  
T Consensus       122 ~~~eiv~~Ll~~Gadin~~~d~~g~t-------pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~  194 (494)
T PHA02989        122 NNCDMLRFLLSKGINVNDVKNSRGYN-------LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDID  194 (494)
T ss_pred             CcHHHHHHHHHCCCCcccccCCCCCC-------HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccc
Confidence            4567889999999999 677766665       99998764  688999999999999988 5788999999887654  


Q ss_pred             --CHHHHHHHHHCCCCCCc--------------------------------------cCCCCCCHhhHhhhcCcHHHHHH
Q 022481          243 --RTDIAFILMESGANMDC--------------------------------------KNAQGESPLDCAPVTLQYKMRQK  282 (296)
Q Consensus       243 --~~~iv~~LL~~ga~~~~--------------------------------------~d~~g~TpL~~A~~~g~~~iv~~  282 (296)
                        +.+++++|+++|++++.                                      +|..|+||||+|+..|+.+++++
T Consensus       195 ~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~  274 (494)
T PHA02989        195 VISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNY  274 (494)
T ss_pred             cccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHH
Confidence              88889998888877654                                      44568999999999999999999


Q ss_pred             HHHcCCCCCCCCC
Q 022481          283 MEEDKNNVGSTTS  295 (296)
Q Consensus       283 Ll~~gadi~~~n~  295 (296)
                      |+++|||++.+|.
T Consensus       275 LL~~Gadin~~d~  287 (494)
T PHA02989        275 LLKLGDDIYNVSK  287 (494)
T ss_pred             HHHcCCCccccCC
Confidence            9999999998874

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.73  E-value=3.8e-18  Score=152.84  Aligned_cols=135  Identities=18%  Similarity=0.128  Sum_probs=112.7

Q ss_pred             ccccCCCCCCCCcCcccccC-CCCCCCCCCCCC-ccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHH
Q 022481          160 ENTARSRGSTSNSNFSSIFN-PGQVTNGATDKP-RMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHL  237 (296)
Q Consensus       160 ~~~~~~~~~~~~~~~~~ll~-~g~~~~~~~~~~-~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~  237 (296)
                      .+..-++..|..+++++|+. .++++.....-. ....-.|-+||..|+..||+++|+.|+.+|++||.......|||--
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLra  123 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRA  123 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHH
Confidence            34455567778888898887 455543321110 0111245569999999999999999999999999998888999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          238 AALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       238 A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      |+.-|+++++++|+++|||++..|..|.|.||+|+..|+.+|+++|++.|||+|.++
T Consensus       124 ACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks  180 (615)
T KOG0508|consen  124 ACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKS  180 (615)
T ss_pred             HHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhc
Confidence            999999999999999999999999999999999999999999999999999999875

>PHA02730 ankyrin-like protein; Provisional

Probab=99.73  E-value=1e-17  Score=160.70  Aligned_cols=119  Identities=16%  Similarity=0.167  Sum_probs=102.4

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCC----HHHHHHHHHcCC--CCcccCCCCCcHHHH---HH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD----AAAVKKLLSEGV--DANFCDKQGMSLLHL---AA  239 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~----~~~v~~Ll~~ga--dvn~~d~~g~TpLh~---A~  239 (296)
                      ....++++|++.|+++|.. ..       |.||||+|+..++    .+++++||++|+  ++|.+|..|.||||.   |.
T Consensus       357 v~ieIvelLIs~GAdIN~k-~~-------G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~  428 (672)
T PHA02730        357 VSIPILRCMLDNGATMDKT-TD-------NNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSR  428 (672)
T ss_pred             CcHHHHHHHHHCCCCCCcC-CC-------CCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHH
Confidence            4567789999999999963 33       4459999998875    899999999997  699999999999994   33


Q ss_pred             HcC---------CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          240 LFN---------RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       240 ~~g---------~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ..+         ..+++++|+.+||++|.+|..|+||||+|+..++.+++++|+++||++|.+|+
T Consensus       429 ~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~  493 (672)
T PHA02730        429 FNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSR  493 (672)
T ss_pred             hccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence            232         23579999999999999999999999999999999999999999999999874

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.73  E-value=8.8e-18  Score=167.21  Aligned_cols=109  Identities=27%  Similarity=0.302  Sum_probs=69.2

Q ss_pred             cccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481          174 FSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES  253 (296)
Q Consensus       174 ~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~  253 (296)
                      ...++..|++++.++..+.+       |||.|+..|++.+|++||++|+|++.+|+.|+||||.|+..|+.+|+++|+++
T Consensus       523 ~~~l~~~ga~v~~~~~r~~T-------pLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~  595 (1143)
T KOG4177|consen  523 AKILLEHGANVDLRTGRGYT-------PLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH  595 (1143)
T ss_pred             HHHHhhcCCceehhcccccc-------hHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHc
Confidence            34444555555554444443       66666666666666666666666666666666666666666666666666666


Q ss_pred             CCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          254 GANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       254 ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      ||++|..|.+|.|||++|++.|+++++++|+..+++
T Consensus       596 GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  596 GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             CCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            666666666666666666666666666666666665

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.72  E-value=1.5e-17  Score=117.76  Aligned_cols=91  Identities=25%  Similarity=0.288  Sum_probs=85.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHH
Q 022481          201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR  280 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv  280 (296)
                      -+.|++++|.++.|+..+..|.++|.. ..|++|||+|+.+|+++++++|+..||+++.+|++|-|||..|+..|+.++|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            689999999999999999999998854 4899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCC
Q 022481          281 QKMEEDKNNVGS  292 (296)
Q Consensus       281 ~~Ll~~gadi~~  292 (296)
                      ++||++|||-.+
T Consensus        84 klLL~~GAdrt~   95 (117)
T KOG4214|consen   84 KLLLQNGADRTI   95 (117)
T ss_pred             HHHHHcCcccce
Confidence            999999998654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.72  E-value=6.1e-18  Score=160.06  Aligned_cols=128  Identities=20%  Similarity=0.213  Sum_probs=115.1

Q ss_pred             cccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHH-cC-CCCcccCCCCCcHHHHH
Q 022481          161 NTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLS-EG-VDANFCDKQGMSLLHLA  238 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~-~g-advn~~d~~g~TpLh~A  238 (296)
                      +..-++..|....+..|+..|++++..+.++.+       |||.||.+|++..|+.||+ .| ..+|..|..|+||||+|
T Consensus       276 pLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~s-------pLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla  348 (929)
T KOG0510|consen  276 PLHYAARQGGPESVDNLLGFGASINSKNKDEES-------PLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA  348 (929)
T ss_pred             hHHHHHHcCChhHHHHHHHcCCcccccCCCCCC-------chHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence            344455668888899999999999999987777       9999999999999999998 44 56788899999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCC---ccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          239 ALFNRTDIAFILMESGANMD---CKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       239 ~~~g~~~iv~~LL~~ga~~~---~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +..||..++++||+.||+.+   ..|.+|.||||+|+..|+..+|++|+.+||+|+.+|.
T Consensus       349 a~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~  408 (929)
T KOG0510|consen  349 AKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNK  408 (929)
T ss_pred             hhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccc
Confidence            99999999999999999988   4599999999999999999999999999999977654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.72  E-value=2.7e-17  Score=156.47  Aligned_cols=117  Identities=16%  Similarity=0.267  Sum_probs=106.8

Q ss_pred             CcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcC---CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC---H
Q 022481          171 NSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG---DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR---T  244 (296)
Q Consensus       171 ~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g---~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~---~  244 (296)
                      ..++++|++.|+++|..+..|.+       |||+|+..+   +.+++++|+++|++++.+|..|.||||+|+..++   .
T Consensus        89 ~~iv~~Ll~~GadiN~~d~~G~T-------pLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~  161 (489)
T PHA02798         89 LDIVKILIENGADINKKNSDGET-------PLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDI  161 (489)
T ss_pred             HHHHHHHHHCCCCCCCCCCCcCc-------HHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchH
Confidence            57789999999999999887776       999999975   7899999999999999999999999999999988   9


Q ss_pred             HHHHHHHHCCCCCCccC-CCCCCHhhHhhhc----CcHHHHHHHHHcCCCCCCCC
Q 022481          245 DIAFILMESGANMDCKN-AQGESPLDCAPVT----LQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d-~~g~TpL~~A~~~----g~~~iv~~Ll~~gadi~~~n  294 (296)
                      +++++|+++|++++..+ ..|.||||.+...    ++.+++++|+++|++++..+
T Consensus       162 ~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~  216 (489)
T PHA02798        162 EIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKEN  216 (489)
T ss_pred             HHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCC
Confidence            99999999999999985 5799999988754    58999999999999998765

>PHA02917 ankyrin-like protein; Provisional

Probab=99.71  E-value=3.1e-17  Score=160.01  Aligned_cols=115  Identities=14%  Similarity=0.121  Sum_probs=94.2

Q ss_pred             CcccccCCCCCCCCCCCCCccccccChHHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC-------
Q 022481          173 NFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN-------  242 (296)
Q Consensus       173 ~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g-------  242 (296)
                      .++.|+..|...+..+..+.+       |||+|+..   |+.++|++||+.|++++..|..|+||||+|+..|       
T Consensus        14 ~~~~l~~~~~~~~~~d~~g~t-------~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~   86 (661)
T PHA02917         14 ELKQMLRDRDPNDTRNQFKNN-------ALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKD   86 (661)
T ss_pred             HHHHHHhccCcccccCCCCCc-------HHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHH
Confidence            356677777777766766665       89987555   7789999999889998888888889988777543       


Q ss_pred             ----------------------------CHHHHHHHHHCCCCCCccCCCCCCHhhHh--hhcCcHHHHHHHHHcCCCCCC
Q 022481          243 ----------------------------RTDIAFILMESGANMDCKNAQGESPLDCA--PVTLQYKMRQKMEEDKNNVGS  292 (296)
Q Consensus       243 ----------------------------~~~iv~~LL~~ga~~~~~d~~g~TpL~~A--~~~g~~~iv~~Ll~~gadi~~  292 (296)
                                                  +.+++++||++|+|+|.+|.+|+||||+|  +..|+.+++++|+++||+++.
T Consensus        87 ~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~  166 (661)
T PHA02917         87 IAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY  166 (661)
T ss_pred             HHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc
Confidence                                        45778899999999999999999999964  357899999999999999986


Q ss_pred             CC
Q 022481          293 TT  294 (296)
Q Consensus       293 ~n  294 (296)
                      .|
T Consensus       167 ~d  168 (661)
T PHA02917        167 ED  168 (661)
T ss_pred             cc
Confidence            54

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.71  E-value=1.2e-17  Score=166.13  Aligned_cols=129  Identities=19%  Similarity=0.251  Sum_probs=118.9

Q ss_pred             CccccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 022481          159 TENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLA  238 (296)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A  238 (296)
                      .+....++..+....+..|++.++..+.....+.+       +||.|...+...+++.++++|++++.++..|+||||.|
T Consensus       475 ~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~-------~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A  547 (1143)
T KOG4177|consen  475 FTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLT-------PLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVA  547 (1143)
T ss_pred             CcchhhhhccCCchHHHHhhhcCCccCccchhccc-------hhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHH
Confidence            44455667778888889999999777777766666       99999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          239 ALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       239 ~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      +.+|+.++|++||++|||++.+++.|+||||.|+..|+.+++++|+++||++|+.|
T Consensus       548 ~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d  603 (1143)
T KOG4177|consen  548 VHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAAD  603 (1143)
T ss_pred             HhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999876

>PHA02946 ankyin-like protein; Provisional

Probab=99.71  E-value=2.2e-17  Score=154.84  Aligned_cols=93  Identities=18%  Similarity=0.257  Sum_probs=61.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcC--c
Q 022481          201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN--RTDIAFILMESGANMDCKNAQGESPLDCAPVTL--Q  276 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g--~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g--~  276 (296)
                      ||| |+..|+.+++++|++.|++++.+|..|+||||+|+..+  +.+++++|+++|++++.+|.+|+||||+|+..+  +
T Consensus       144 pL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~  222 (446)
T PHA02946        144 PLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN  222 (446)
T ss_pred             HHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCc
Confidence            554 33445555566666666666666666777777766543  356777777777777777777777777777664  6


Q ss_pred             HHHHHHHHHcCCCCCCCCC
Q 022481          277 YKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       277 ~~iv~~Ll~~gadi~~~n~  295 (296)
                      .+++++|++ |+++|.+|+
T Consensus       223 ~~iv~lLl~-gadin~~d~  240 (446)
T PHA02946        223 VDIINLLLP-STDVNKQNK  240 (446)
T ss_pred             HHHHHHHHc-CCCCCCCCC
Confidence            677777774 777777664

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.70  E-value=3.7e-17  Score=142.40  Aligned_cols=121  Identities=18%  Similarity=0.206  Sum_probs=93.2

Q ss_pred             CCCCCCcCcccccCCC-CCCCCCCCCCccccc-------------------------------cChHHHHHHHHcCCHHH
Q 022481          166 RGSTSNSNFSSIFNPG-QVTNGATDKPRMEYE-------------------------------VNGEGLRDAIKNGDAAA  213 (296)
Q Consensus       166 ~~~~~~~~~~~ll~~g-~~~~~~~~~~~~~~~-------------------------------~~~t~Lh~A~~~g~~~~  213 (296)
                      .+.++..+|+.||+.| .+++.++..|.++.-                               .|+|+||+|+.+|+.++
T Consensus       276 VSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~  355 (452)
T KOG0514|consen  276 VSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDM  355 (452)
T ss_pred             ecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHH
Confidence            3445777888999887 678888877665331                               46778888888888888


Q ss_pred             HHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481          214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  286 (296)
Q Consensus       214 v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~-ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  286 (296)
                      |+.||..|+|||.+|.+|-|+||.|+.+||.+|+++||.. ++|+...|.+|.|+|.+|...|+.+|.-+|..+
T Consensus       356 vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  356 VKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             HHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            8888888888888888888888888888888888888776 778888888888888888888888877666543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.69  E-value=4.6e-17  Score=158.81  Aligned_cols=119  Identities=10%  Similarity=0.147  Sum_probs=102.7

Q ss_pred             CCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHH--HcCCHHHHHHHHHcCCCCcccCC---CC---------
Q 022481          166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAI--KNGDAAAVKKLLSEGVDANFCDK---QG---------  231 (296)
Q Consensus       166 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~--~~g~~~~v~~Ll~~gadvn~~d~---~g---------  231 (296)
                      +..+...++++|++.|+++|..+..+.+       |||+|+  ..|+.+++++||++|+++|..|.   .|         
T Consensus       111 ~~~~~~e~vk~Ll~~Gadin~~d~~g~T-------~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        111 SKNVDVDLIKVLVEHGFDLSVKCENHRS-------VIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             hhcCCHHHHHHHHHcCCCCCccCCCCcc-------HHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence            3445678899999999999999888777       999654  57899999999999999987653   34         


Q ss_pred             --CcHHHHHHH-----------cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcH--HHHHHHHHcCCCCCC
Q 022481          232 --MSLLHLAAL-----------FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY--KMRQKMEEDKNNVGS  292 (296)
Q Consensus       232 --~TpLh~A~~-----------~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~--~iv~~Ll~~gadi~~  292 (296)
                        .||||+|+.           +++.+++++|+++|||+|.+|.+|.||||+|+..|+.  ++|++|++ |++++.
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~  258 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTA  258 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccc
Confidence              599999986           5689999999999999999999999999999999985  79999985 887753

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.69  E-value=2.5e-17  Score=143.43  Aligned_cols=104  Identities=22%  Similarity=0.324  Sum_probs=88.4

Q ss_pred             CCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcC-CCCcccCC---------------------------------
Q 022481          184 TNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCDK---------------------------------  229 (296)
Q Consensus       184 ~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g-advn~~d~---------------------------------  229 (296)
                      +|..|.+|++       +|||++.++++++|+.||+.| +++|.+|+                                 
T Consensus       261 VNlaDsNGNT-------ALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVN  333 (452)
T KOG0514|consen  261 VNLADSNGNT-------ALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVN  333 (452)
T ss_pred             hhhhcCCCCe-------eeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcc
Confidence            4566655555       999999999999999999987 56666554                                 


Q ss_pred             -----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc-CCCCCCCC
Q 022481          230 -----QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED-KNNVGSTT  294 (296)
Q Consensus       230 -----~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gadi~~~n  294 (296)
                           .|.|+||+|+.+|+.++|+.||.-|||+|.+|.+|.|+|+.|+.+|+.||+++||.. +.|+..+|
T Consensus       334 aKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD  404 (452)
T KOG0514|consen  334 AKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTD  404 (452)
T ss_pred             hhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeec
Confidence                 356678888889999999999999999999999999999999999999999999975 77776655

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.68  E-value=1.5e-16  Score=157.16  Aligned_cols=114  Identities=23%  Similarity=0.332  Sum_probs=67.2

Q ss_pred             CcccccCCCCCCCCCCCCCccccccChHHHHHHHHcC-CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc-CCHHHHHHH
Q 022481          173 NFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNG-DAAAVKKLLSEGVDANFCDKQGMSLLHLAALF-NRTDIAFIL  250 (296)
Q Consensus       173 ~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g-~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~-g~~~iv~~L  250 (296)
                      ++++|+..|++++..+..+.+       |||+|+..| +.+++++|+..|++++..|..|+||||+|+.. ++.+++++|
T Consensus       289 iv~lLl~~gadin~~d~~g~T-------pLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lL  361 (682)
T PHA02876        289 LVPKLLERGADVNAKNIKGET-------PLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITL  361 (682)
T ss_pred             HHHHHHHCCCCCCCcCCCCCC-------HHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHH
Confidence            566677777777766655554       666666655 35555555555555555555555555555543 345555555


Q ss_pred             HHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCC
Q 022481          251 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST  293 (296)
Q Consensus       251 L~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~  293 (296)
                      +++|++++.+|..|.||||+|+..|+.+++++|+++|++++..
T Consensus       362 l~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~  404 (682)
T PHA02876        362 LELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL  404 (682)
T ss_pred             HHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcccc
Confidence            5555555555555555555555555555555555555555543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.68  E-value=8.8e-18  Score=137.15  Aligned_cols=124  Identities=21%  Similarity=0.142  Sum_probs=111.8

Q ss_pred             CCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481          164 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  243 (296)
Q Consensus       164 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~  243 (296)
                      =++..+....+++||+.|++++.......+       +|+.|...|..++|++||.++.|+|..|.+|-|||.||++.++
T Consensus       166 WAaa~G~i~vV~fLL~~GAdp~~lgk~res-------ALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnh  238 (296)
T KOG0502|consen  166 WAAAKGHIPVVQFLLNSGADPDALGKYRES-------ALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNH  238 (296)
T ss_pred             HHHhcCchHHHHHHHHcCCChhhhhhhhhh-------hHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCCh
Confidence            344557778899999999999988776665       9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      .++++.||..||+++..+..|++++.+|+..|+. +|+..+++-+.++.+|+
T Consensus       239 vkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~  289 (296)
T KOG0502|consen  239 VKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDS  289 (296)
T ss_pred             HHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999988 88888887776655553

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.67  E-value=9.8e-17  Score=129.28  Aligned_cols=96  Identities=22%  Similarity=0.268  Sum_probs=79.4

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCC--C-----CcccCCCCCcHHHHHHHcCCHH---HHHHHHHCCCCCCccCC-CCCC
Q 022481          198 NGEGLRDAIKNGDAAAVKKLLSEGV--D-----ANFCDKQGMSLLHLAALFNRTD---IAFILMESGANMDCKNA-QGES  266 (296)
Q Consensus       198 ~~t~Lh~A~~~g~~~~v~~Ll~~ga--d-----vn~~d~~g~TpLh~A~~~g~~~---iv~~LL~~ga~~~~~d~-~g~T  266 (296)
                      |.||||+|+..|+.  +.+++..+.  +     ++..|..|+||||+|+..|+.+   ++++|+++|++++.+|. .|+|
T Consensus        17 g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T   94 (154)
T PHA02736         17 GENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNT   94 (154)
T ss_pred             CCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCc
Confidence            45599999999984  333332222  2     3456889999999999999874   68899999999999984 8999


Q ss_pred             HhhHhhhcCcHHHHHHHHH-cCCCCCCCCC
Q 022481          267 PLDCAPVTLQYKMRQKMEE-DKNNVGSTTS  295 (296)
Q Consensus       267 pL~~A~~~g~~~iv~~Ll~-~gadi~~~n~  295 (296)
                      |||+|+..|+.+++++|+. .|++++.+|.
T Consensus        95 ~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~  124 (154)
T PHA02736         95 PLHIAVYTQNYELATWLCNQPGVNMEILNY  124 (154)
T ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCccccC
Confidence            9999999999999999998 5999998764

>KOG1729 consensus FYVE finger containing protein [General function prediction only]

Probab=99.66  E-value=1.2e-17  Score=144.76  Aligned_cols=67  Identities=37%  Similarity=0.776  Sum_probs=62.4

Q ss_pred             CCCCCCCccccccccccc-cccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481            2 SIEPPAFQEATRCDVCKC-SFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   69 (296)
Q Consensus         2 ~~~w~~~~~~~~C~~C~~-~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   69 (296)
                      .-.|.||.++..|+.|++ .|+++.||||||+||.|||..|+.+++.+|... .+++|||+.||..+..
T Consensus       159 ~~~W~PD~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~-~k~~rvC~~CF~el~~  226 (288)
T KOG1729|consen  159 AAVWLPDSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLS-TKPIRVCDICFEELEK  226 (288)
T ss_pred             CCcccCcccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccC-CCCceecHHHHHHHhc
Confidence            357999999999999999 999999999999999999999999998887776 6899999999999976

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.65  E-value=8.5e-16  Score=154.48  Aligned_cols=97  Identities=24%  Similarity=0.335  Sum_probs=86.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhc----
Q 022481          199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVT----  274 (296)
Q Consensus       199 ~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~----  274 (296)
                      .++||.||..|+.++++.|++.|+|+|..|..|.||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..    
T Consensus       526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~  605 (823)
T PLN03192        526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK  605 (823)
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            3589999999999999999999999999999999999999999999999999999999999999999999866554    


Q ss_pred             ---------------------------CcHHHHHHHHHcCCCCCCCCC
Q 022481          275 ---------------------------LQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       275 ---------------------------g~~~iv~~Ll~~gadi~~~n~  295 (296)
                                                 |+.+++++|+++|+|+|.+|+
T Consensus       606 iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~  653 (823)
T PLN03192        606 IFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDH  653 (823)
T ss_pred             HHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCC
Confidence                                       455566667788888887764

>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=4.7e-17  Score=152.42  Aligned_cols=70  Identities=36%  Similarity=0.861  Sum_probs=65.2

Q ss_pred             CCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccCCC
Q 022481            4 EPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKD   73 (296)
Q Consensus         4 ~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~~   73 (296)
                      .-+.|.+...|+.|..+|++|+|+||||+||+|||..|+++.+.+|.+|++++||||+.||+.+.+....
T Consensus       158 ~~pdW~D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~l~~~s~~  227 (634)
T KOG1818|consen  158 TAPDWIDSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYELLTRASVG  227 (634)
T ss_pred             CCcccccccccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhHHHhhhcccc
Confidence            4567888899999999999999999999999999999999999999999999999999999999877555

>PHA02792 ankyrin-like protein; Provisional

Probab=99.63  E-value=7.8e-16  Score=146.39  Aligned_cols=117  Identities=13%  Similarity=0.058  Sum_probs=100.7

Q ss_pred             CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CcHHHHHHHcCCH---
Q 022481          170 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG--MSLLHLAALFNRT---  244 (296)
Q Consensus       170 ~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g--~TpLh~A~~~g~~---  244 (296)
                      ...++++|++.|++.+.  ...       ...++.|+..|+.++|++|+++|++++.+|..|  .||||+|......   
T Consensus       320 ~ieiIK~LId~Ga~~~r--~~~-------~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~  390 (631)
T PHA02792        320 YINVIKCMIDEGATLYR--FKH-------INKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVL  390 (631)
T ss_pred             cHHHHHHHHHCCCcccc--CCc-------chHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHH
Confidence            44557889999998752  112       227999999999999999999999999999775  6999998777654   


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +++++|+++||++|.+|..|+||||+|+..++.+++++|+++|++++.+|.
T Consensus       391 ~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~  441 (631)
T PHA02792        391 SILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTK  441 (631)
T ss_pred             HHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            468899999999999999999999999999999999999999999998875

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.63  E-value=3.3e-16  Score=148.45  Aligned_cols=135  Identities=19%  Similarity=0.155  Sum_probs=113.4

Q ss_pred             CCCccccCCCCCCCCcCcccccCCCCCCCCCCC--------CCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC
Q 022481          157 KKTENTARSRGSTSNSNFSSIFNPGQVTNGATD--------KPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD  228 (296)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~--------~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d  228 (296)
                      ....+...+...+....++.+|+.|........        .-......|.||||+|++.|+.+.++.|+..|++++.++
T Consensus       224 ~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn  303 (929)
T KOG0510|consen  224 EKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKN  303 (929)
T ss_pred             CCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccC
Confidence            455666667777888888888888765533220        012223356779999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH-CC-CCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481          229 KQGMSLLHLAALFNRTDIAFILME-SG-ANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  291 (296)
Q Consensus       229 ~~g~TpLh~A~~~g~~~iv~~LL~-~g-a~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~  291 (296)
                      .++.||||.|+.+|+...++-||+ .| ..+|..|..|.||||+|+..|+.+++++||+.||+..
T Consensus       304 ~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  304 KDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             CCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            999999999999999999999999 54 5678899999999999999999999999999999876

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.63  E-value=1.6e-15  Score=148.68  Aligned_cols=94  Identities=26%  Similarity=0.350  Sum_probs=89.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHH
Q 022481          201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR  280 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv  280 (296)
                      .|+.|+..|+.+.+++|++.|+++|.+|..|+||||+|+..|+.+++++||++|++++.+|..|+||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc-------CCCCCCCC
Q 022481          281 QKMEED-------KNNVGSTT  294 (296)
Q Consensus       281 ~~Ll~~-------gadi~~~n  294 (296)
                      ++|+++       |++++..+
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~  185 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDS  185 (664)
T ss_pred             HHHHhCCCcccccCCCCCccc
Confidence            999999       77776554

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=3.8e-15  Score=135.17  Aligned_cols=93  Identities=27%  Similarity=0.378  Sum_probs=87.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHH
Q 022481          201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR  280 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv  280 (296)
                      .|..|+..|.+++|+.++..--|+...+..|.|+||-|+..||++||+|||+.|+|+|+.|.+||||||.|+..++..|+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            46779999999999999988889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCC
Q 022481          281 QKMEEDKNNVGST  293 (296)
Q Consensus       281 ~~Ll~~gadi~~~  293 (296)
                      +.|++.||-|.+.
T Consensus       633 kqLVe~GaavfAs  645 (752)
T KOG0515|consen  633 KQLVESGAAVFAS  645 (752)
T ss_pred             HHHHhccceEEee
Confidence            9999999977553

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.62  E-value=4e-16  Score=103.55  Aligned_cols=55  Identities=36%  Similarity=0.634  Sum_probs=33.5

Q ss_pred             HHHcC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHh
Q 022481          217 LLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA  271 (296)
Q Consensus       217 Ll~~g-advn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A  271 (296)
                      ||++| +++|.+|..|.||||+|+.+|+.+++++||++|++++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            67888 99999999999999999999999999999999999999999999999987

>PHA02792 ankyrin-like protein; Provisional

Probab=99.61  E-value=1.1e-15  Score=145.46  Aligned_cols=122  Identities=16%  Similarity=0.139  Sum_probs=104.9

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCH---HHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDA---AAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~---~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      ++..+...++++|+..|++++..+..+.     +.||||+|+.....   +++++|+++|+++|.+|..|+||||+|+..
T Consensus       346 Aa~~gn~eIVelLIs~GADIN~kD~~g~-----~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~  420 (631)
T PHA02792        346 KFDNRDPKVVEYILKNGNVVVEDDDNII-----NIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIES  420 (631)
T ss_pred             HHHcCCHHHHHHHHHcCCchhhhcCCCC-----ChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHc
Confidence            3456677889999999999998876543     23599998877654   468889999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhh----------cCcHHHHHHHHHcCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPV----------TLQYKMRQKMEEDKNNVG  291 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~----------~g~~~iv~~Ll~~gadi~  291 (296)
                      ++.+++++|+++|++++.+|..|.||||+|..          ....+++++||++|.+++
T Consensus       421 ~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        421 HSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            99999999999999999999999999999975          223677999999998765

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.61  E-value=1.2e-15  Score=111.23  Aligned_cols=83  Identities=31%  Similarity=0.390  Sum_probs=71.3

Q ss_pred             CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481          168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv  247 (296)
                      .+....++.|+..+.+.+.    +.+       +||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus         7 ~~~~~~~~~ll~~~~~~~~----~~~-------~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    7 NGNLEILKFLLEKGADINL----GNT-------ALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             TTTHHHHHHHHHTTSTTTS----SSB-------HHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             cCCHHHHHHHHHCcCCCCC----CCC-------HHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            3455667788887776665    333       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCccC
Q 022481          248 FILMESGANMDCKN  261 (296)
Q Consensus       248 ~~LL~~ga~~~~~d  261 (296)
                      ++|+++|++++.+|
T Consensus        76 ~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHTTT-TTSS-
T ss_pred             HHHHHcCCCCCCcC
Confidence            99999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.61  E-value=6.4e-16  Score=140.77  Aligned_cols=122  Identities=20%  Similarity=0.229  Sum_probs=101.8

Q ss_pred             CCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcc--------------------
Q 022481          167 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANF--------------------  226 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~--------------------  226 (296)
                      ......++.+|++.|+++|..+..+|+       |||.|+..|++.++++||.+|+++..                    
T Consensus        82 id~~~e~v~~l~e~ga~Vn~~d~e~wt-------Plhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~  154 (527)
T KOG0505|consen   82 IDDNLEMVKFLVENGANVNAQDNEGWT-------PLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDV  154 (527)
T ss_pred             hcccHHHHHHHHHhcCCccccccccCC-------cchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHH
Confidence            334556688888888888888877777       88888888888888888888764222                    


Q ss_pred             ---------------------------------------cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCH
Q 022481          227 ---------------------------------------CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESP  267 (296)
Q Consensus       227 ---------------------------------------~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~Tp  267 (296)
                                                             .+..|-|.||.|+.+|.+++.++||++|.+++.+|.+||||
T Consensus       155 l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtP  234 (527)
T KOG0505|consen  155 LETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTP  234 (527)
T ss_pred             HHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCc
Confidence                                                   12347788999999999999999999999999999999999


Q ss_pred             hhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          268 LDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       268 L~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ||.|+..|..+++++|+++|+++++.+.
T Consensus       235 lHAAA~Wg~~~~~elL~~~ga~~d~~t~  262 (527)
T KOG0505|consen  235 LHAAAHWGQEDACELLVEHGADMDAKTK  262 (527)
T ss_pred             ccHHHHhhhHhHHHHHHHhhcccchhhh
Confidence            9999999999999999999999987654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.60  E-value=5.3e-15  Score=142.10  Aligned_cols=96  Identities=16%  Similarity=0.209  Sum_probs=85.9

Q ss_pred             ChHHHHHHHHcC---CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHHCCC--CCCccCCCCCCHhhH
Q 022481          198 NGEGLRDAIKNG---DAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN--RTDIAFILMESGA--NMDCKNAQGESPLDC  270 (296)
Q Consensus       198 ~~t~Lh~A~~~g---~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g--~~~iv~~LL~~ga--~~~~~d~~g~TpL~~  270 (296)
                      |.||||+|+..|   +.++|++||++||+++.+|..|+||||+|+..+  +.+++++||++|+  +++..+..+.+||+.
T Consensus        41 G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~~  120 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLYS  120 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHHH
Confidence            445999999997   599999999999999999999999999999976  7999999999965  558888889999999


Q ss_pred             hhh--cCcHHHHHHHHH-cCCCCCCC
Q 022481          271 APV--TLQYKMRQKMEE-DKNNVGST  293 (296)
Q Consensus       271 A~~--~g~~~iv~~Ll~-~gadi~~~  293 (296)
                      ++.  .++.++|++|++ .++|++..
T Consensus       121 y~~s~n~~~~~vk~Li~~~~~~~~~~  146 (672)
T PHA02730        121 YMSSDNIDLRLLKYLIVDKRIRPSKN  146 (672)
T ss_pred             HHHhcCCcHHHHHHHHHhcCCChhhh
Confidence            888  899999999996 67887765

>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

Probab=99.59  E-value=3.5e-16  Score=104.32  Aligned_cols=55  Identities=45%  Similarity=0.978  Sum_probs=50.9

Q ss_pred             ccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchh
Q 022481           11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN   65 (296)
Q Consensus        11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~   65 (296)
                      +..|+.|+++|+++.||||||.||++||..|+.++..++.....+++|||+.||.
T Consensus         2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~   56 (57)
T cd00065           2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE   56 (57)
T ss_pred             cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence            5689999999999999999999999999999999999887556799999999986

>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]

Probab=99.59  E-value=2.3e-16  Score=142.22  Aligned_cols=63  Identities=38%  Similarity=0.866  Sum_probs=60.3

Q ss_pred             CCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccc-----cchhh
Q 022481            4 EPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCA-----DCFNS   66 (296)
Q Consensus         4 ~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~-----~C~~~   66 (296)
                      .|.||.++..||.|+.+|++|+||||||+||.|||..|+....++|.+|..+.+|||.     .||..
T Consensus       894 awipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~ka~rvcrpqsnldc~~r  961 (990)
T KOG1819|consen  894 AWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLDKAPRVCRPQSNLDCLTR  961 (990)
T ss_pred             ccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccccCceecCCcccccceee
Confidence            5999999999999999999999999999999999999999999999999999999999     78754

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.59  E-value=2.6e-14  Score=109.33  Aligned_cols=99  Identities=28%  Similarity=0.391  Sum_probs=91.5

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      .|.|+||+|+..++.+++++|++.|.+.+..+..|.||||+|+..++.+++++|+++|++++..+..|.||+|+|+..++
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~   85 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGN   85 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCc
Confidence            35569999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCC
Q 022481          277 YKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       277 ~~iv~~Ll~~gadi~~~n~  295 (296)
                      .+++++|+++|.+++..|.
T Consensus        86 ~~~~~~L~~~~~~~~~~~~  104 (126)
T cd00204          86 LDVVKLLLKHGADVNARDK  104 (126)
T ss_pred             HHHHHHHHHcCCCCcccCC
Confidence            9999999999988776653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.59  E-value=1.1e-15  Score=129.58  Aligned_cols=119  Identities=24%  Similarity=0.293  Sum_probs=104.0

Q ss_pred             CCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q 022481          166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  245 (296)
Q Consensus       166 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~  245 (296)
                      +..+...+++.|+..|+.+|..+-...+       |||.|+.+|+.++|+.||++.+|+|+.+..|+||||||+.-|.-.
T Consensus        42 akegh~aivemll~rgarvn~tnmgddt-------plhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydq  114 (448)
T KOG0195|consen   42 AKEGHVAIVEMLLSRGARVNSTNMGDDT-------PLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQ  114 (448)
T ss_pred             hhcccHHHHHHHHhcccccccccCCCCc-------chhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHH
Confidence            3445667789999999999998766555       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481          246 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  291 (296)
Q Consensus       246 iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~  291 (296)
                      |++-|+..||-++..|++|.|||..|.-.-...+.++..++|-++|
T Consensus       115 iaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  115 IAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             HHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999865544455555566777766

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.57  E-value=3.5e-15  Score=136.05  Aligned_cols=126  Identities=21%  Similarity=0.225  Sum_probs=110.6

Q ss_pred             cCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481          163 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  242 (296)
Q Consensus       163 ~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g  242 (296)
                      ..+...+....++.|+..|+.++..+..+.+       +||.++...+.++|++|+++|++||..|..||||||.|+-.|
T Consensus        45 l~A~~~~d~~ev~~ll~~ga~~~~~n~DglT-------alhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg  117 (527)
T KOG0505|consen   45 LEACSRGDLEEVRKLLNRGASPNLCNVDGLT-------ALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCG  117 (527)
T ss_pred             HhccccccHHHHHHHhccCCCccccCCccch-------hHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccc
Confidence            4445567777899999999888777777666       999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCccC-----------------------------------------------------------CC
Q 022481          243 RTDIAFILMESGANMDCKN-----------------------------------------------------------AQ  263 (296)
Q Consensus       243 ~~~iv~~LL~~ga~~~~~d-----------------------------------------------------------~~  263 (296)
                      +..++++||.+||++...|                                                           ..
T Consensus       118 ~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~r  197 (527)
T KOG0505|consen  118 YLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHAR  197 (527)
T ss_pred             cHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccc
Confidence            9999999999887644332                                                           34


Q ss_pred             CCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          264 GESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       264 g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |-|.||+|+..|+.++.++|+++|.+++++|.
T Consensus       198 G~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~  229 (527)
T KOG0505|consen  198 GATALHVAAANGYTEVAALLLQAGYSVNIKDY  229 (527)
T ss_pred             cchHHHHHHhhhHHHHHHHHHHhccCcccccc
Confidence            77999999999999999999999999998873

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.56  E-value=7.6e-15  Score=96.72  Aligned_cols=54  Identities=26%  Similarity=0.411  Sum_probs=26.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHH
Q 022481          231 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME  284 (296)
Q Consensus       231 g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  284 (296)
                      |+|+||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            445555555555555555555555555555555555555555555555555553

...

>PTZ00303 phosphatidylinositol kinase; Provisional

Probab=99.54  E-value=2.7e-15  Score=141.05  Aligned_cols=67  Identities=25%  Similarity=0.526  Sum_probs=53.2

Q ss_pred             CCCCCCCcc-cccccccccccccc-----ccccccccccceEcCCCCCCceecC-----CCC---CCCceeccccchhhh
Q 022481            2 SIEPPAFQE-ATRCDVCKCSFNTF-----RRRHHCRCCGRTLCHEHSSDQMTLP-----QFG---IHTNVRVCADCFNSS   67 (296)
Q Consensus         2 ~~~w~~~~~-~~~C~~C~~~f~~~-----~r~hhCr~Cg~~~C~~c~~~~~~~~-----~~~---~~~~~rvC~~C~~~~   67 (296)
                      ...|++|++ ++.|+.|+++|+++     .||||||+||++||..||+++..++     ..+   ...+.|||+.||+.+
T Consensus       450 APvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~  529 (1374)
T PTZ00303        450 NPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEY  529 (1374)
T ss_pred             CCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHH
Confidence            357999998 48899999999865     5999999999999999999876432     222   123678999999665


Q ss_pred             c
Q 022481           68 S   68 (296)
Q Consensus        68 ~   68 (296)
                      .
T Consensus       530 E  530 (1374)
T PTZ00303        530 E  530 (1374)
T ss_pred             H
Confidence            4

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=1.9e-14  Score=94.79  Aligned_cols=54  Identities=35%  Similarity=0.407  Sum_probs=45.9

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 022481          198 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM  251 (296)
Q Consensus       198 ~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL  251 (296)
                      |.|+||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+.+|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456999999999999999999999999999999999999999999999999997

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.53  E-value=3.3e-14  Score=119.92  Aligned_cols=112  Identities=26%  Similarity=0.328  Sum_probs=94.3

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCC-----HHHHHHHHHcCC---CCcccCCCCCcHHHHHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD-----AAAVKKLLSEGV---DANFCDKQGMSLLHLAAL  240 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~-----~~~v~~Ll~~ga---dvn~~d~~g~TpLh~A~~  240 (296)
                      +....+..++..|.+++..+..+.+       +||+|+..++     .+++++||+.|+   +.+.+|..|+||||+|+.
T Consensus        84 ~~~~~~~~l~~~~~~~~~~~~~g~t-------~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~  156 (235)
T COG0666          84 GDDKIVKLLLASGADVNAKDADGDT-------PLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL  156 (235)
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCc-------HHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHH
Confidence            3444456888888888888877776       8999999988     899999999888   555568889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcC
Q 022481          241 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  287 (296)
Q Consensus       241 ~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  287 (296)
                      .|+.+++++|++.|++++..+..|.|+|++|+..++.+++..|++.+
T Consensus       157 ~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         157 NGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999988888999999999999999988888864

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=8.7e-14  Score=117.38  Aligned_cols=96  Identities=31%  Similarity=0.415  Sum_probs=90.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CCCccCCCCCCHhhH
Q 022481          199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-----TDIAFILMESGA---NMDCKNAQGESPLDC  270 (296)
Q Consensus       199 ~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~-----~~iv~~LL~~ga---~~~~~d~~g~TpL~~  270 (296)
                      .+++|+++..+..+++++|+..|++++.+|..|.||||+|+..++     .+++++||++|+   +.+.+|..|+||||+
T Consensus        74 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~  153 (235)
T COG0666          74 RLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHW  153 (235)
T ss_pred             cCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHH
Confidence            349999999999999999999999999999999999999999999     999999999999   666779999999999


Q ss_pred             hhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          271 APVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       271 A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      |+..|+.+++++|++.|++++..|
T Consensus       154 A~~~~~~~~~~~ll~~~~~~~~~~  177 (235)
T COG0666         154 AALNGDADIVELLLEAGADPNSRN  177 (235)
T ss_pred             HHHcCchHHHHHHHhcCCCCcccc
Confidence            999999999999999999998764

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.52  E-value=1.6e-14  Score=102.50  Aligned_cols=92  Identities=21%  Similarity=0.238  Sum_probs=78.0

Q ss_pred             cCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 022481          172 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM  251 (296)
Q Consensus       172 ~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL  251 (296)
                      +.++..+..|.++|...        .|.+|||||+..|.++++++|+..|++++.+|++|.|||.-|+..||.++|++||
T Consensus        16 DeVk~~v~~g~nVn~~~--------ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL   87 (117)
T KOG4214|consen   16 DEVKQSVNEGLNVNEIY--------GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLL   87 (117)
T ss_pred             HHHHHHHHccccHHHHh--------CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHH
Confidence            34555555665555433        3445999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCCCccCCCCCCHhhHh
Q 022481          252 ESGANMDCKNAQGESPLDCA  271 (296)
Q Consensus       252 ~~ga~~~~~d~~g~TpL~~A  271 (296)
                      ++||+-..+.-+|.+.+..+
T Consensus        88 ~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   88 QNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HcCcccceeCCCchhHHhhc
Confidence            99999999988898776644

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.52  E-value=1.2e-14  Score=137.12  Aligned_cols=120  Identities=21%  Similarity=0.142  Sum_probs=105.8

Q ss_pred             ccccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 022481          160 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA  239 (296)
Q Consensus       160 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~  239 (296)
                      +.+..+.-.+...++++|++..+..+..+..+..       |||+|++.|+.++++.||.++..+|..+..|.||||+|+
T Consensus        51 Talhha~Lng~~~is~llle~ea~ldl~d~kg~~-------plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaa  123 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLDYEALLDLCDTKGIL-------PLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAA  123 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhcchhhhhhhhccCcc-------eEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhh
Confidence            3344445567788889999998888888866665       999999999999999999999889999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481          240 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  286 (296)
Q Consensus       240 ~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  286 (296)
                      +.||.+++.+||.+|+|.-.+|+.+.|+|.+|++.|..++|++|++.
T Consensus       124 qhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  124 QHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             hhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999987

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.51  E-value=3.2e-14  Score=141.99  Aligned_cols=129  Identities=23%  Similarity=0.219  Sum_probs=100.1

Q ss_pred             ccccCCCCCCCCcCcccccCC--CCCCCCCCCCCccccccChHHHH-HHHHcCCHHHHHHHHHcCCC-------------
Q 022481          160 ENTARSRGSTSNSNFSSIFNP--GQVTNGATDKPRMEYEVNGEGLR-DAIKNGDAAAVKKLLSEGVD-------------  223 (296)
Q Consensus       160 ~~~~~~~~~~~~~~~~~ll~~--g~~~~~~~~~~~~~~~~~~t~Lh-~A~~~g~~~~v~~Ll~~gad-------------  223 (296)
                      .....++..++...++.+++.  +.++|..|..+.+       ||| .|+.+++.+++++|+++|+.             
T Consensus        19 ~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t-------~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        19 KAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRS-------ALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHcCCHHHHHHHhccccccCCCCcCccchh-------HHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHh
Confidence            334455666777778888877  6777766665555       888 77777777888887777630             


Q ss_pred             -------------------------Ccc----cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC-------------
Q 022481          224 -------------------------ANF----CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN-------------  261 (296)
Q Consensus       224 -------------------------vn~----~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d-------------  261 (296)
                                               ++.    .+..|.||||+|+.+|+.+++++||++||+++.++             
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~  171 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS  171 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence                                     000    11358999999999999999999999999999753             


Q ss_pred             -CCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          262 -AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       262 -~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                       ..|.||||+|+..|+.+++++|+++|+|++.+|+
T Consensus       172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~  206 (743)
T TIGR00870       172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADS  206 (743)
T ss_pred             ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhh
Confidence             3589999999999999999999999999998775

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.49  E-value=5.2e-14  Score=132.82  Aligned_cols=99  Identities=22%  Similarity=0.238  Sum_probs=94.7

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      .|-|+||.|+.+|+..++++|+++.+-++..|..|.+|||+|++.|+.+++++||.++..+|+.+..|.||||.|+.+|+
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh  127 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGH  127 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcc
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCC
Q 022481          277 YKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       277 ~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++++.+|+.+|+|.-++|+
T Consensus       128 ~dvv~~Ll~~~adp~i~nn  146 (854)
T KOG0507|consen  128 LEVVFYLLKKNADPFIRNN  146 (854)
T ss_pred             hHHHHHHHhcCCCccccCc
Confidence            9999999999999988875

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.49  E-value=1.9e-13  Score=104.51  Aligned_cols=110  Identities=28%  Similarity=0.384  Sum_probs=99.9

Q ss_pred             CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481          168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv  247 (296)
                      .+....+..|+..+...+..+..+.+       +||+|+..++.+++++|++.|++++..+..|.||+|+|+..++.+++
T Consensus        17 ~~~~~~i~~li~~~~~~~~~~~~g~~-------~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~   89 (126)
T cd00204          17 NGHLEVVKLLLENGADVNAKDNDGRT-------PLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVV   89 (126)
T ss_pred             cCcHHHHHHHHHcCCCCCccCCCCCc-------HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHH
Confidence            34456788888888887666666665       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHH
Q 022481          248 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME  284 (296)
Q Consensus       248 ~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  284 (296)
                      ++|+++|.+++..|..|.|||++|...++.+++++|+
T Consensus        90 ~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          90 KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999999999999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.48  E-value=1.2e-13  Score=117.26  Aligned_cols=111  Identities=20%  Similarity=0.187  Sum_probs=82.1

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHcCCHHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~-d~~g~TpLh~A~~~g~~~iv  247 (296)
                      ++......||..-..+|..|+.|.+       +|..|++.|+.++|++||+.|+|||.. +..++||||+|+..|+.++.
T Consensus        23 ndt~~a~~LLs~vr~vn~~D~sGMs-------~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvc   95 (396)
T KOG1710|consen   23 NDTEAALALLSTVRQVNQRDPSGMS-------VLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVC   95 (396)
T ss_pred             CcHHHHHHHHHHhhhhhccCCCccc-------HHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHH
Confidence            3334444555555556666666665       888888888888888888888888753 45578888888888888888


Q ss_pred             HHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481          248 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  286 (296)
Q Consensus       248 ~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  286 (296)
                      ++||+.|+.+...|.-|+|+-++|+.-|+.++|.++-.+
T Consensus        96 rllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   96 RLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            888888888888888888888888888888888765443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.48  E-value=8.7e-14  Score=132.60  Aligned_cols=102  Identities=26%  Similarity=0.271  Sum_probs=92.6

Q ss_pred             ccccChHHHHHHHHcCCHHHHHHHHHcCCCCccc---------C--------------CCCCcHHHHHHHcCCHHHHHHH
Q 022481          194 EYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC---------D--------------KQGMSLLHLAALFNRTDIAFIL  250 (296)
Q Consensus       194 ~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~---------d--------------~~g~TpLh~A~~~g~~~iv~~L  250 (296)
                      ++-.|+|+||.|+.+.+.++|++||+.||||+++         |              ..|..||-+||-.++.+++++|
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL  259 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL  259 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence            3346889999999999999999999999999985         1              2478999999999999999999


Q ss_pred             HHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC--CCCCCC
Q 022481          251 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN--VGSTTS  295 (296)
Q Consensus       251 L~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad--i~~~n~  295 (296)
                      +++|||++++|.+|+|.||..+..-..+|-.++|++|++  ..++|+
T Consensus       260 l~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~  306 (782)
T KOG3676|consen  260 LAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNN  306 (782)
T ss_pred             HhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcccccccc
Confidence            999999999999999999999999999999999999999  666654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.46  E-value=8.5e-14  Score=118.14  Aligned_cols=97  Identities=27%  Similarity=0.258  Sum_probs=90.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcc-CCCCCCHhhHhhhcCcHH
Q 022481          200 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK-NAQGESPLDCAPVTLQYK  278 (296)
Q Consensus       200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~-d~~g~TpL~~A~~~g~~~  278 (296)
                      .+|..++..|+.+....||..--++|.+|..|+|+|..|+..|+.+++++||++|||+|.. +..++||||+|+..|+.+
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d   93 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD   93 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence            3899999999999999999876679999999999999999999999999999999999975 556999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCC
Q 022481          279 MRQKMEEDKNNVGSTTSV  296 (296)
Q Consensus       279 iv~~Ll~~gadi~~~n~l  296 (296)
                      +.++||+.||.+...|++
T Consensus        94 vcrllldaGa~~~~vNsv  111 (396)
T KOG1710|consen   94 VCRLLLDAGARMYLVNSV  111 (396)
T ss_pred             HHHHHHhccCccccccch
Confidence            999999999999888864

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.45  E-value=1.4e-13  Score=137.31  Aligned_cols=95  Identities=20%  Similarity=0.140  Sum_probs=83.6

Q ss_pred             ccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC--------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC
Q 022481          196 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD--------------KQGMSLLHLAALFNRTDIAFILMESGANMDCKN  261 (296)
Q Consensus       196 ~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d--------------~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d  261 (296)
                      ..|.||||+|+..|+.++|++||++|++++.++              ..|.||||+|+..|+.+++++|+++|+|++.+|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            357789999999999999999999999999753              358999999999999999999999999999999


Q ss_pred             CCCCCHhhHhhhcC---------cHHHHHHHHHcCCCC
Q 022481          262 AQGESPLDCAPVTL---------QYKMRQKMEEDKNNV  290 (296)
Q Consensus       262 ~~g~TpL~~A~~~g---------~~~iv~~Ll~~gadi  290 (296)
                      ..|+||||+|+..+         ...+.+++++.+++.
T Consensus       206 ~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999886         234667777766654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=1e-12  Score=119.61  Aligned_cols=94  Identities=24%  Similarity=0.207  Sum_probs=83.0

Q ss_pred             ccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHhhH
Q 022481          192 RMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN-AQGESPLDC  270 (296)
Q Consensus       192 ~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d-~~g~TpL~~  270 (296)
                      ...++.|.|+||-|+..||.+||+|||+.|++||..|.+||||||+|+..+++.+++.|++.||-|.+.. .++.||..-
T Consensus       577 SqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eK  656 (752)
T KOG0515|consen  577 SQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEK  656 (752)
T ss_pred             CCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhh
Confidence            3445677789999999999999999999999999999999999999999999999999999999988765 458888876


Q ss_pred             hh--hcCcHHHHHHHHH
Q 022481          271 AP--VTLQYKMRQKMEE  285 (296)
Q Consensus       271 A~--~~g~~~iv~~Ll~  285 (296)
                      +-  ..|+..+.++|-.
T Consensus       657 Cee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  657 CEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             cchhhhhHHHHHHHHHH
Confidence            63  4788899998864

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.35  E-value=1e-12  Score=87.10  Aligned_cols=55  Identities=31%  Similarity=0.408  Sum_probs=32.5

Q ss_pred             ccCCC-CCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 022481          177 IFNPG-QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLA  238 (296)
Q Consensus       177 ll~~g-~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A  238 (296)
                      ||+.| .+++..+..+.+       |||+|+..|+.++|++||+.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T-------~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNT-------PLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS---------HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCc-------HHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45666 777777777766       99999999999999999999999999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.33  E-value=1.7e-12  Score=127.53  Aligned_cols=104  Identities=24%  Similarity=0.243  Sum_probs=93.2

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      ...++..+....++.|+..|+++|..+..+.+       |||+|+..|+.+++++||++|+++|.+|..|.||||+|+..
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~T-------pLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADPNCRDYDGRT-------PLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-------HHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            33455667788899999999999988877666       99999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHC-------CCCCCccCCCCCCHhhHhh
Q 022481          242 NRTDIAFILMES-------GANMDCKNAQGESPLDCAP  272 (296)
Q Consensus       242 g~~~iv~~LL~~-------ga~~~~~d~~g~TpL~~A~  272 (296)
                      |+.+++++|+++       |++++..+..|.+|+..+.
T Consensus       159 g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        159 GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999999999       9999999988888776554

>KOG1842 consensus FYVE finger-containing protein [General function prediction only]

Probab=99.33  E-value=8.5e-14  Score=124.02  Aligned_cols=67  Identities=31%  Similarity=0.634  Sum_probs=54.9

Q ss_pred             CCCCCCccccccccccccccccccccccccccceEcCCCCCCceecC-----------------C-----C-CCCCceec
Q 022481            3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLP-----------------Q-----F-GIHTNVRV   59 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~-----------------~-----~-~~~~~~rv   59 (296)
                      |+|..|.++..|..|..+|++.+||||||.||+|+|.+|+.+- +++                 .     . ....++|+
T Consensus       172 VpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~i-Sle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iRl  250 (505)
T KOG1842|consen  172 VPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFI-SLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIRL  250 (505)
T ss_pred             ccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhc-ChHHHHHHhhccCCCCCcCcccCcccccCChhHhHH
Confidence            7899999999999999999999999999999999999998652 210                 0     0 01346899


Q ss_pred             cccchhhhccc
Q 022481           60 CADCFNSSSRT   70 (296)
Q Consensus        60 C~~C~~~~~~~   70 (296)
                      |..|...+..+
T Consensus       251 C~hCl~~L~~R  261 (505)
T KOG1842|consen  251 CMHCLDNLFRR  261 (505)
T ss_pred             HHHHHHHHHHH
Confidence            99999887653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.32  E-value=2e-12  Score=123.50  Aligned_cols=118  Identities=24%  Similarity=0.264  Sum_probs=103.8

Q ss_pred             CCCcCcccccCCCCCCCCCCCC-------C-----cccc----ccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 022481          169 TSNSNFSSIFNPGQVTNGATDK-------P-----RMEY----EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGM  232 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~-------~-----~~~~----~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~  232 (296)
                      .+...+++|+..|++++.+-.-       .     .+.|    --|..||-+||-.+..+++++|+++|||++.+|..|+
T Consensus       195 ~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GN  274 (782)
T KOG3676|consen  195 RDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGN  274 (782)
T ss_pred             ccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCC
Confidence            4667789999999998764321       1     1111    1356799999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481          233 SLLHLAALFNRTDIAFILMESGAN--MDCKNAQGESPLDCAPVTLQYKMRQKMEED  286 (296)
Q Consensus       233 TpLh~A~~~g~~~iv~~LL~~ga~--~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  286 (296)
                      |.||..+..-..++..++|++|++  ...+|+.|.|||.+|+..|+.+|.+.+++.
T Consensus       275 TVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  275 TVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999  999999999999999999999999999997

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.19  E-value=1e-11  Score=121.38  Aligned_cols=128  Identities=21%  Similarity=0.224  Sum_probs=113.9

Q ss_pred             ccccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCcHHHHH
Q 022481          160 ENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLA  238 (296)
Q Consensus       160 ~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~-d~~g~TpLh~A  238 (296)
                      .++..+-..+..+++.+|+..|+++..++..+-.       +|.+|+-.||..+|+.||++-++++.+ |+.+.|+|.+|
T Consensus       759 t~LT~acaggh~e~vellv~rganiehrdkkgf~-------plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  759 TNLTSACAGGHREEVELLVVRGANIEHRDKKGFV-------PLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLA  831 (2131)
T ss_pred             ccccccccCccHHHHHHHHHhcccccccccccch-------hhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEe
Confidence            3344444556677789999999999999988887       999999999999999999999999875 67799999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          239 ALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       239 ~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      +-.|++++|++||.+|++-..++-..+|||.+|...|+.+||++||.+|+.||.+.
T Consensus       832 csggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrt  887 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT  887 (2131)
T ss_pred             cCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccccc
Confidence            99999999999999999999999999999999999999999999999999998764

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.14  E-value=6.1e-11  Score=106.89  Aligned_cols=90  Identities=26%  Similarity=0.316  Sum_probs=85.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHhhHhhhcCcH
Q 022481          199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTLQY  277 (296)
Q Consensus       199 ~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~-ga~~~~~d~~g~TpL~~A~~~g~~  277 (296)
                      .-.+++|++.|++..++.+.-.|.|++.+|.+.+|+||.|+..|+.+++++||+. +.+++.+|.+|+|||+-|...++.
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~  586 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK  586 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence            3479999999999999999999999999999999999999999999999999988 999999999999999999999999


Q ss_pred             HHHHHHHHcCC
Q 022481          278 KMRQKMEEDKN  288 (296)
Q Consensus       278 ~iv~~Ll~~ga  288 (296)
                      +++++|.+.-.
T Consensus       587 ~v~k~L~~~~~  597 (622)
T KOG0506|consen  587 EVVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHHhc
Confidence            99999988643

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.13  E-value=2.2e-10  Score=103.74  Aligned_cols=86  Identities=27%  Similarity=0.378  Sum_probs=81.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHH
Q 022481          201 GLRDAIKNGDAAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM  279 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~-~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~i  279 (296)
                      -||..++.|+++..-.||..|+++|..+. .|.||||.|+..|+..-+++|+-+|||+++.|.+|.||+.+|-..|+.++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            69999999999999999999999999885 59999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc
Q 022481          280 RQKMEED  286 (296)
Q Consensus       280 v~~Ll~~  286 (296)
                      .+-|++.
T Consensus       216 aeRl~e~  222 (669)
T KOG0818|consen  216 AERLVEI  222 (669)
T ss_pred             HHHHHHH
Confidence            8887764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.12  E-value=2.7e-11  Score=118.49  Aligned_cols=124  Identities=21%  Similarity=0.244  Sum_probs=91.9

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHcCC
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNR  243 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g~  243 (296)
                      .++.+...++..||..|..+|.+....     .|..||+.|..+|+.+.++.||+.|.|||..- .+.+|+|-+|...|+
T Consensus       864 a~Sggy~~iI~~llS~GseInSrtgSk-----lgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr  938 (2131)
T KOG4369|consen  864 ARSGGYTKIIHALLSSGSEINSRTGSK-----LGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGR  938 (2131)
T ss_pred             hcCcchHHHHHHHhhcccccccccccc-----cCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCc
Confidence            344445555666666666665543222     12337888888888888888887777777653 346678888888888


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCC
Q 022481          244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST  293 (296)
Q Consensus       244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~  293 (296)
                      .+++.+||.+.+++..+...|.|||+-++..|+.++-++||.+|||+|+.
T Consensus       939 ~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nas  988 (2131)
T KOG4369|consen  939 PEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNAS  988 (2131)
T ss_pred             chHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccC
Confidence            88888888888888888889999999999999999999999999998863

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.08  E-value=1.4e-10  Score=106.54  Aligned_cols=104  Identities=21%  Similarity=0.263  Sum_probs=90.8

Q ss_pred             cccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481          176 SIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVD--ANFCDKQGMSLLHLAALFNRTDIAFILMES  253 (296)
Q Consensus       176 ~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gad--vn~~d~~g~TpLh~A~~~g~~~iv~~LL~~  253 (296)
                      .+...|+..-.++....+       .||+|+..|+-++|++||++|..  ++..|..|.|+||-|+..++..+.++|++.
T Consensus       884 E~h~~gg~ll~~~~~~~s-------llh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvda  956 (1004)
T KOG0782|consen  884 ETHLNGGSLLIQGPDHCS-------LLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDA  956 (1004)
T ss_pred             HHHhcCCceEeeCcchhh-------HHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhc
Confidence            334456666666655554       89999999999999999999853  677889999999999999999999999999


Q ss_pred             CCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481          254 GANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  286 (296)
Q Consensus       254 ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  286 (296)
                      ||.+-..|..|.||-..|-..|..++..+|..+
T Consensus       957 gasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  957 GASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             chhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999999999999999998764

>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]

Probab=99.04  E-value=1e-10  Score=114.68  Aligned_cols=61  Identities=30%  Similarity=0.531  Sum_probs=49.6

Q ss_pred             CCCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccc
Q 022481            2 SIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADC   63 (296)
Q Consensus         2 ~~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C   63 (296)
                      .-.|.||.++..||.|..+|++++||||||.||+|+|..|+..+..+-... ...-|||..|
T Consensus       548 qP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~-e~~~rv~nV~  608 (1287)
T KOG1841|consen  548 QPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLS-ESEGRVSNVD  608 (1287)
T ss_pred             CCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcC-cccccccccc
Confidence            457999999999999999999999999999999999999999987764331 2333444433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.01  E-value=8.7e-11  Score=102.17  Aligned_cols=91  Identities=26%  Similarity=0.688  Sum_probs=74.3

Q ss_pred             CCCCCCccccccccccccccc-c----------ccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481            3 IEPPAFQEATRCDVCKCSFNT-F----------RRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG   71 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~~-~----------~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~   71 (296)
                      ++-+.|.+...|..|.++|.. |          .|.||||.||..||..|++++...|..|....+|+|+.||..+....
T Consensus       274 ~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~  353 (404)
T KOG1409|consen  274 VETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEE  353 (404)
T ss_pred             ecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCC
Confidence            445677788899999999862 1          38999999999999999999999999999999999999999998887


Q ss_pred             CCCCCCCCCCcCCCccccccccCCCC
Q 022481           72 KDNLQVSSDGVNSVTDTFSRLDIDSD   97 (296)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (296)
                      +...+.+.+....    +..+++++.
T Consensus       354 ~t~LA~phei~tg----Itamhlqet  375 (404)
T KOG1409|consen  354 RTPLAIPHEIKTG----ITAMHLQET  375 (404)
T ss_pred             CCccccccccccc----eeEEEhhhh
Confidence            7666666555444    566677654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.99  E-value=1.9e-10  Score=109.85  Aligned_cols=83  Identities=27%  Similarity=0.392  Sum_probs=76.6

Q ss_pred             CCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCccCC
Q 022481          184 TNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCKNA  262 (296)
Q Consensus       184 ~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~-g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~  262 (296)
                      .|..|..|++       +||+|+..+..+++++||++|+|++.+|.. |+||||-|+.+|+++++-+||.+|+.+.++|.
T Consensus        45 anikD~~GR~-------alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk  117 (1267)
T KOG0783|consen   45 ANIKDRYGRT-------ALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK  117 (1267)
T ss_pred             hhHHHhhccc-------eeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc
Confidence            4566666666       999999999999999999999999999965 99999999999999999999999999999999


Q ss_pred             CCCCHhhHhhh
Q 022481          263 QGESPLDCAPV  273 (296)
Q Consensus       263 ~g~TpL~~A~~  273 (296)
                      +|..||++.++
T Consensus       118 eglsplq~~~r  128 (1267)
T KOG0783|consen  118 EGLSPLQFLSR  128 (1267)
T ss_pred             cCCCHHHHHhh
Confidence            99999998776

>PF13606 Ank_3: Ankyrin repeat

Probab=98.99  E-value=6.7e-10  Score=63.43  Aligned_cols=28  Identities=39%  Similarity=0.540  Sum_probs=14.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q 022481          231 GMSLLHLAALFNRTDIAFILMESGANMD  258 (296)
Q Consensus       231 g~TpLh~A~~~g~~~iv~~LL~~ga~~~  258 (296)
                      |+||||+|+..|+.+++++||++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4455555555555555555555555444

>PF13606 Ank_3: Ankyrin repeat

Probab=98.97  E-value=6.4e-10  Score=63.50  Aligned_cols=30  Identities=20%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             CCCCHhhHhhhcCcHHHHHHHHHcCCCCCC
Q 022481          263 QGESPLDCAPVTLQYKMRQKMEEDKNNVGS  292 (296)
Q Consensus       263 ~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~  292 (296)
                      +|+||||+|+..|+.+++++|+++|+|+|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999985

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.95  E-value=2.3e-09  Score=98.87  Aligned_cols=89  Identities=22%  Similarity=0.199  Sum_probs=79.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC--cc--cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481          201 GLRDAIKNGDAAAVKKLLSEGVDA--NF--CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~gadv--n~--~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      -|..|+...++..+-+||.+|...  |.  -+.+|.|+||+|+..|+..+.++|+-+|+|+-++|.+|+|+|.||-..|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            577888888999999999998543  32  35678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 022481          277 YKMRQKMEEDKNN  289 (296)
Q Consensus       277 ~~iv~~Ll~~gad  289 (296)
                      .+++.+||++|.-
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999874

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.94  E-value=1.3e-09  Score=63.80  Aligned_cols=31  Identities=32%  Similarity=0.561  Sum_probs=15.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCccC
Q 022481          231 GMSLLHLAALFNRTDIAFILMESGANMDCKN  261 (296)
Q Consensus       231 g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d  261 (296)
                      |+||||+|+..|+.+++++||++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            4455555555555555555555555554443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.94  E-value=2e-09  Score=98.70  Aligned_cols=86  Identities=27%  Similarity=0.302  Sum_probs=76.9

Q ss_pred             HHHHHHHcCCHHHHHHHH--HcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHH
Q 022481          201 GLRDAIKNGDAAAVKKLL--SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYK  278 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll--~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~  278 (296)
                      +||+++...+.+-+..++  +.+..++..|..|.||||+|+..|+...++.||.+||++..+|++|++|||.|+..|+..
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            699999998877665544  346778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc
Q 022481          279 MRQKMEED  286 (296)
Q Consensus       279 iv~~Ll~~  286 (296)
                      ++..+|.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            88887765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.93  E-value=1.2e-09  Score=64.05  Aligned_cols=33  Identities=12%  Similarity=0.246  Sum_probs=31.5

Q ss_pred             CCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          263 QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       263 ~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +|+||||+|+..|+.+++++|+++|++++++|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999999985

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.86  E-value=7.5e-10  Score=105.88  Aligned_cols=72  Identities=18%  Similarity=0.201  Sum_probs=68.0

Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-CCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          224 ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ-GESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       224 vn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~-g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      .|..|..|+|+||+|+..+..+++++||++|++++.+|.. |+||||.|...|+++++-+||.+|+.+.++|+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dk  117 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDK  117 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecc
Confidence            7889999999999999999999999999999999999976 99999999999999999999999998877664

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.77  E-value=3.2e-08  Score=87.39  Aligned_cols=82  Identities=28%  Similarity=0.358  Sum_probs=71.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHH
Q 022481          201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR  280 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv  280 (296)
                      -|.+|++.|+.+.|+.|++.|.+||..|.+..+||.+|...||.++|++||++||-...-..+|...+.-|.   +..|-
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaL---nd~IR  115 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGAL---NDRIR  115 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhh---hHHHH
Confidence            689999999999999999999999999999999999999999999999999999988877778887765444   34444


Q ss_pred             HHHHH
Q 022481          281 QKMEE  285 (296)
Q Consensus       281 ~~Ll~  285 (296)
                      ++||.
T Consensus       116 ~mlls  120 (516)
T KOG0511|consen  116 RMLLS  120 (516)
T ss_pred             HHHHH
Confidence            45544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.62  E-value=9e-08  Score=77.15  Aligned_cols=53  Identities=25%  Similarity=0.246  Sum_probs=32.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481          201 GLRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMES  253 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~g-advn~~d~~g~TpLh~A~~~g~~~iv~~LL~~  253 (296)
                      +||.|+..|..+++.+|+.+| +++.+.|..|.+++.+|-..|+.+++..|-++
T Consensus        15 almcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen   15 ALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             HHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            666666666666666666665 55666666666666666666666666665555

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.59  E-value=7.4e-08  Score=89.18  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=68.3

Q ss_pred             cccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481          174 FSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES  253 (296)
Q Consensus       174 ~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~  253 (296)
                      +-+||..|.....-...+   ...|.|+||+|+..|++.+.++|+.+|+|+..+|..|+|+|.||-+.|..+++..||++
T Consensus       640 ~~lLLAhg~~~e~~~t~~---~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~  716 (749)
T KOG0705|consen  640 AILLLAHGSREEVNETCG---EGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQY  716 (749)
T ss_pred             HHHHHhccCchhhhcccc---CCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHc
Confidence            456677776554333222   23567899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 022481          254 GANMD  258 (296)
Q Consensus       254 ga~~~  258 (296)
                      |...+
T Consensus       717 gcp~e  721 (749)
T KOG0705|consen  717 GCPDE  721 (749)
T ss_pred             CCCcc
Confidence            97544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.59  E-value=3.9e-08  Score=97.11  Aligned_cols=89  Identities=30%  Similarity=0.399  Sum_probs=82.2

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      .|.++||.|+..|...++++||+.|+++|..|..|.||||.+...|++..+..|+++||+.++.+.+|.++|++|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            45779999999999999999999999999999999999999999999999999999999999999999999999987777


Q ss_pred             HHHHHHHHH
Q 022481          277 YKMRQKMEE  285 (296)
Q Consensus       277 ~~iv~~Ll~  285 (296)
                      .+++-+|.-
T Consensus       735 ~d~~~l~~l  743 (785)
T KOG0521|consen  735 ADIVLLLRL  743 (785)
T ss_pred             ccHHHHHhh
Confidence            777666543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.57  E-value=2.3e-07  Score=85.83  Aligned_cols=95  Identities=20%  Similarity=0.238  Sum_probs=85.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCCHhhHhhhcCcHH
Q 022481          201 GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN--MDCKNAQGESPLDCAPVTLQYK  278 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~--~~~~d~~g~TpL~~A~~~g~~~  278 (296)
                      -|..|+..+++--++.+..+|.++-.++.+-.|.||+|+..|+-+||+|||++|..  +++.|..|.|+||-|+..++..
T Consensus       869 eil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  869 EILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            47788888888777777778999999999999999999999999999999999854  6778899999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCC
Q 022481          279 MRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       279 iv~~Ll~~gadi~~~n~  295 (296)
                      +.++|++.||.+..+|+
T Consensus       949 vc~~lvdagasl~ktd~  965 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTDS  965 (1004)
T ss_pred             HHHHHHhcchhheeccc
Confidence            99999999998877664

>KOG1843 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=2.8e-08  Score=88.39  Aligned_cols=66  Identities=15%  Similarity=0.046  Sum_probs=57.3

Q ss_pred             CCCCCCCcccccccccccccc-ccccccccccccceEcCCCCCCceecC-CCCCCCceeccccchhhh
Q 022481            2 SIEPPAFQEATRCDVCKCSFN-TFRRRHHCRCCGRTLCHEHSSDQMTLP-QFGIHTNVRVCADCFNSS   67 (296)
Q Consensus         2 ~~~w~~~~~~~~C~~C~~~f~-~~~r~hhCr~Cg~~~C~~c~~~~~~~~-~~~~~~~~rvC~~C~~~~   67 (296)
                      +-.|.++..+..|+.|...|+ .+.||||||.|+.+||..|+..+..+| .+....+.|||+.|+..+
T Consensus       151 ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl  218 (473)
T KOG1843|consen  151 APVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAADPLQRVLDSCAFNL  218 (473)
T ss_pred             CccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCcccCCHHHHHhhHhhcc
Confidence            457999999999999999999 567999999999999999998775554 344567899999999988

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.49  E-value=2.2e-07  Score=84.68  Aligned_cols=82  Identities=21%  Similarity=0.165  Sum_probs=69.5

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      ...++.....-.||..|++.|......      |.||||.|++.|...-+++|+-+|+|++..|..|+||+.||-..||-
T Consensus       140 svRt~nlet~LRll~lGA~~N~~hpek------g~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  140 SVRTGNLETCLRLLSLGAQANFFHPEK------GNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HhhcccHHHHHHHHHcccccCCCCccc------CCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            334444455556889999999887643      44799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 022481          245 DIAFILME  252 (296)
Q Consensus       245 ~iv~~LL~  252 (296)
                      ++.+.|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            98887776

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.31  E-value=1.9e-07  Score=84.74  Aligned_cols=86  Identities=22%  Similarity=0.198  Sum_probs=74.6

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHH
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAAL  240 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~  240 (296)
                      ..-++-.++...++.+.-.|.+.+..|...++       +||.||..|+++++++||+. +.+++.+|.+|+|||.-|..
T Consensus       510 ~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RT-------aLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  510 VMYAAKNGDLSALRRFALQGMDLETKDYDDRT-------ALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             hhhhhhcCCHHHHHHHHHhcccccccccccch-------hheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            34455566777777788888888888877776       99999999999999999975 89999999999999999999


Q ss_pred             cCCHHHHHHHHHCC
Q 022481          241 FNRTDIAFILMESG  254 (296)
Q Consensus       241 ~g~~~iv~~LL~~g  254 (296)
                      ++|.+++++|-++-
T Consensus       583 F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQ  596 (622)
T ss_pred             cCcHHHHHHHHHHh
Confidence            99999999998763

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.27  E-value=6.2e-07  Score=88.59  Aligned_cols=96  Identities=20%  Similarity=0.185  Sum_probs=80.5

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCCHHHHHHH-HHCCCCCCccCCCCCCHhhHhhhc
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFIL-MESGANMDCKNAQGESPLDCAPVT  274 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~iv~~L-L~~ga~~~~~d~~g~TpL~~A~~~  274 (296)
                      .+++.||.++..+..-+++.+++. |......|.+|.-.+|+++ .++++.+-+| +-.|..++.+|..|+||||||+..
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~  651 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR  651 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhhc
Confidence            568899999999999999999986 7777777888888999954 4555555444 456999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCCC
Q 022481          275 LQYKMRQKMEEDKNNVGST  293 (296)
Q Consensus       275 g~~~iv~~Ll~~gadi~~~  293 (296)
                      |+..++..|++.|++..+.
T Consensus       652 G~e~l~a~l~~lga~~~~~  670 (975)
T KOG0520|consen  652 GREKLVASLIELGADPGAV  670 (975)
T ss_pred             CHHHHHHHHHHhccccccc
Confidence            9999999999999877643

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.25  E-value=4.2e-06  Score=67.69  Aligned_cols=68  Identities=16%  Similarity=0.098  Sum_probs=64.3

Q ss_pred             CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCC
Q 022481          221 GVDANFCDKQGMSLLHLAALFNRTDIAFILMESG-ANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKN  288 (296)
Q Consensus       221 gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~g-a~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  288 (296)
                      +.+||.+|.+|||+||.|+..|..+.+.+|+.+| +.+...|..|.+++.+|-..|..+.++.|.+.--
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            4689999999999999999999999999999999 9999999999999999999999999999988643

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.23  E-value=1.9e-06  Score=83.60  Aligned_cols=96  Identities=17%  Similarity=0.099  Sum_probs=67.0

Q ss_pred             CCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-----
Q 022481          183 VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM-----  257 (296)
Q Consensus       183 ~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~-----  257 (296)
                      ++|..|..|+.       +|+.|+.+.+.+++++|++++..+       .-+|.+|+..|..++|++|+.+-...     
T Consensus        54 ninc~d~lGr~-------al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~  119 (822)
T KOG3609|consen   54 NINCRDPLGRL-------ALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLER  119 (822)
T ss_pred             chhccChHhhh-------ceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhcc
Confidence            34455555554       777777777777777777765544       24667777777777777777653221     


Q ss_pred             -----CccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCC
Q 022481          258 -----DCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGS  292 (296)
Q Consensus       258 -----~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~  292 (296)
                           ...-.-+-|||.+|+..+++||+++||.+|+.+-.
T Consensus       120 ~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen  120 SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence                 11223467999999999999999999999998754

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.23  E-value=1.9e-06  Score=76.44  Aligned_cols=58  Identities=21%  Similarity=0.163  Sum_probs=55.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          232 MSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       232 ~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      .--|..|++.|..+.|++|++.|.++|.+|.....||.+|...|+.++|++||++||-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            4458889999999999999999999999999999999999999999999999999984

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.20  E-value=3e-06  Score=78.17  Aligned_cols=68  Identities=25%  Similarity=0.285  Sum_probs=59.4

Q ss_pred             CCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481          179 NPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES  253 (296)
Q Consensus       179 ~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~  253 (296)
                      +.+..++..|..+.+       |||.|+..|+.+.++.|+..|+++..+|..||++||.|+..|+.+++..+|.+
T Consensus        43 ~~~~~id~~D~~g~T-------pLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   43 KVSLVIDRRDPPGRT-------PLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             hhhceeccccCCCCc-------cHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            345566677766655       99999999999999999999999999999999999999999999988777654

>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]

Probab=98.05  E-value=1.1e-06  Score=81.78  Aligned_cols=62  Identities=32%  Similarity=0.560  Sum_probs=52.7

Q ss_pred             Ccccccccccccccc-ccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481            8 FQEATRCDVCKCSFN-TFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   70 (296)
Q Consensus         8 ~~~~~~C~~C~~~f~-~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   70 (296)
                      +.+...|+.|+.+|+ ...|||||+.||.++|+.|+..+..+.. ...+..|||..||......
T Consensus       412 ~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~-~~s~ssrv~~~~~~~~~~a  474 (623)
T KOG4424|consen  412 DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSY-DNSRSSRVCMDRYLTPSGA  474 (623)
T ss_pred             ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcc-cccchhhhhhhhccCCCCC
Confidence            677889999999999 4679999999999999999998876643 4468899999999876544

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.04  E-value=4.1e-06  Score=83.04  Aligned_cols=76  Identities=20%  Similarity=0.276  Sum_probs=67.8

Q ss_pred             HcCCCCccc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          219 SEGVDANFC--DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       219 ~~gadvn~~--d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      ..++++|..  -..|.|+||.|+..+...++++||++|+++|..|..|+||||.+...|+...+.+|+++||+.++.|
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~  719 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD  719 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC
Confidence            345555543  2457999999999999999999999999999999999999999999999999999999999998765

>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]

Probab=97.98  E-value=8.2e-07  Score=83.11  Aligned_cols=67  Identities=24%  Similarity=0.487  Sum_probs=56.1

Q ss_pred             CCCCCCc----cccccccc-cccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481            3 IEPPAFQ----EATRCDVC-KCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   69 (296)
Q Consensus         3 ~~w~~~~----~~~~C~~C-~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   69 (296)
                      ..|+|+.    .-..|+.| ...|..|+||||||.||...|..|...+....+.|...+.++|+.|+.....
T Consensus       314 ~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gse~~Adg~Dq~psvsia  385 (1141)
T KOG1811|consen  314 HNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGSENPADGCDQCPSVSIA  385 (1141)
T ss_pred             hhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccccCcccccccccchhhH
Confidence            3588877    44678865 5579999999999999999999999998888888888899999999966443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.83  E-value=8.4e-06  Score=80.80  Aligned_cols=85  Identities=20%  Similarity=0.200  Sum_probs=68.5

Q ss_pred             HHHHHHHcCCHHHHHHH-HHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCc------cCCCCCCHhhHhhh
Q 022481          201 GLRDAIKNGDAAAVKKL-LSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDC------KNAQGESPLDCAPV  273 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~L-l~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~------~d~~g~TpL~~A~~  273 (296)
                      .+|.++ .++++.+-+| +..|..++.+|..||||||||+.+|+..++..|++.|++..+      .+-.|.|+-.+|..
T Consensus       611 V~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s  689 (975)
T KOG0520|consen  611 VIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA  689 (975)
T ss_pred             hhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc
Confidence            788844 4555555444 457999999999999999999999999999999988876543      34468999999999


Q ss_pred             cCcHHHHHHHHHc
Q 022481          274 TLQYKMRQKMEED  286 (296)
Q Consensus       274 ~g~~~iv~~Ll~~  286 (296)
                      .|+..+..+|-+.
T Consensus       690 ~g~~gia~~lse~  702 (975)
T KOG0520|consen  690 NGHKGIAGYLSEK  702 (975)
T ss_pred             ccccchHHHHhhh
Confidence            9998888777653

>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]

Probab=97.67  E-value=5.8e-05  Score=77.43  Aligned_cols=52  Identities=35%  Similarity=0.851  Sum_probs=42.2

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG   71 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~   71 (296)
                      .....|..|+   +.++||||||.||++||++|....        .+.+|||..|+.......
T Consensus         3 ~s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~~~--------~~~i~~~~~~~~~~~~~~   54 (1598)
T KOG0230|consen    3 QSSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQDSP--------ETSIRVCNECRGQWEQGN   54 (1598)
T ss_pred             ccccchhccc---cccccCCCCcccCceeccccCCCC--------ccceeehhhhhhhccccC
Confidence            4556788888   888999999999999999998321        238999999999876553

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.58  E-value=0.00016  Score=66.64  Aligned_cols=71  Identities=18%  Similarity=0.284  Sum_probs=57.8

Q ss_pred             HHHHHHHHHcCCCCccc------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHH
Q 022481          211 AAAVKKLLSEGVDANFC------DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME  284 (296)
Q Consensus       211 ~~~v~~Ll~~gadvn~~------d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  284 (296)
                      ...|++|.+++++.|..      +...-|+||+|+..|...+|.+||+.|+|+..+|..|.||..++.   +.++-..++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence            45678888888777542      445679999999999999999999999999999999999999987   444444333

>smart00248 ANK ankyrin repeats

Probab=97.39  E-value=0.00035  Score=37.79  Aligned_cols=26  Identities=35%  Similarity=0.547  Sum_probs=12.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCC
Q 022481          231 GMSLLHLAALFNRTDIAFILMESGAN  256 (296)
Q Consensus       231 g~TpLh~A~~~g~~~iv~~LL~~ga~  256 (296)
                      |.|+||+|+..++.+++++|+++|.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            34444444444444444444444443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A

Probab=97.34  E-value=9.7e-05  Score=56.52  Aligned_cols=51  Identities=18%  Similarity=0.479  Sum_probs=41.0

Q ss_pred             ccccccccccccccc-ccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhh
Q 022481           10 EATRCDVCKCSFNTF-RRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   67 (296)
Q Consensus        10 ~~~~C~~C~~~f~~~-~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   67 (296)
                      ....|..|+++|+++ ++.+.|..|+.-||..|...       ....+..+|..|+...
T Consensus        53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-------~~~~~~WlC~vC~k~r  104 (118)
T PF02318_consen   53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-------SKKEPIWLCKVCQKQR  104 (118)
T ss_dssp             CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-------TSSSCCEEEHHHHHHH
T ss_pred             CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-------CCCCCCEEChhhHHHH
Confidence            456899999999966 68999999999999999865       2246789999999764

The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.

>smart00248 ANK ankyrin repeats

Probab=97.32  E-value=0.00037  Score=37.68  Aligned_cols=29  Identities=14%  Similarity=0.291  Sum_probs=26.7

Q ss_pred             CCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481          263 QGESPLDCAPVTLQYKMRQKMEEDKNNVG  291 (296)
Q Consensus       263 ~g~TpL~~A~~~g~~~iv~~Ll~~gadi~  291 (296)
                      .|.||||+|+..++.+++++|+++|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999999875

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]

Probab=97.29  E-value=0.00015  Score=74.57  Aligned_cols=34  Identities=38%  Similarity=0.938  Sum_probs=32.7

Q ss_pred             CCCccccccccccccccccccccccccccceEcCCC
Q 022481            6 PAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEH   41 (296)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c   41 (296)
                      +++...+.|..|.++|..|||+|||  ||+|||..|
T Consensus        92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~  125 (1598)
T KOG0230|consen   92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC  125 (1598)
T ss_pred             CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence            6788899999999999999999999  999999999

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.03  E-value=0.00081  Score=65.86  Aligned_cols=81  Identities=21%  Similarity=0.159  Sum_probs=72.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHc--C--CCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481          201 GLRDAIKNGDAAAVKKLLSE--G--VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~--g--advn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      ....|+..|+...|+..++.  .  .++|.+|.-|.++|++|+.+.+.+++++|++++..+       ..+|.+|+..|.
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~  100 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGS  100 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHH
Confidence            67899999999999999975  2  678899999999999999999999999999997665       348999999999


Q ss_pred             HHHHHHHHHcCC
Q 022481          277 YKMRQKMEEDKN  288 (296)
Q Consensus       277 ~~iv~~Ll~~ga  288 (296)
                      .++|++|+.+-.
T Consensus       101 v~~VE~ll~~~~  112 (822)
T KOG3609|consen  101 VPLVELLLVHFV  112 (822)
T ss_pred             HHHHHHHHhccc
Confidence            999999999744

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.48  E-value=0.011  Score=49.47  Aligned_cols=90  Identities=14%  Similarity=0.070  Sum_probs=64.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccC----CCCCcHHHHH--HHcCCHHHHHHHHHCC-CCCCcc---CCCCCCHhh
Q 022481          200 EGLRDAIKNGDAAAVKKLLSEGVDANFCD----KQGMSLLHLA--ALFNRTDIAFILMESG-ANMDCK---NAQGESPLD  269 (296)
Q Consensus       200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d----~~g~TpLh~A--~~~g~~~iv~~LL~~g-a~~~~~---d~~g~TpL~  269 (296)
                      ++|.+++.++..+++.+||.+- +...+|    ..+.-=+-|+  ....+..++++.|.+| +++|.+   -+.|.|-|+
T Consensus       181 ~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD  259 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD  259 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHH
Confidence            3777888888888888888641 222222    1122233333  2345677889999997 677753   567999999


Q ss_pred             HhhhcCcHHHHHHHHHcCCCC
Q 022481          270 CAPVTLQYKMRQKMEEDKNNV  290 (296)
Q Consensus       270 ~A~~~g~~~iv~~Ll~~gadi  290 (296)
                      -|...++.+|+.+||++||-.
T Consensus       260 NA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  260 NAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hHHhcCcHHHHHHHHHcCccc
Confidence            999999999999999999954

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.43  E-value=0.003  Score=58.44  Aligned_cols=67  Identities=21%  Similarity=0.139  Sum_probs=50.9

Q ss_pred             cCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 022481          172 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA  239 (296)
Q Consensus       172 ~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~  239 (296)
                      ..+..|...+...|..-..... +....|+||+|+..|.-++|.+||+.|+|+...|..|.||..++.
T Consensus       405 ~~ie~lken~lsgnf~~~pe~~-~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  405 DSIEALKENLLSGNFDVTPEAN-DYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hHHHHHHhcCCccccccccccc-ccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3455566666665543322222 223457999999999999999999999999999999999999987

>TIGR00622 ssl1 transcription factor ssl1

Probab=94.44  E-value=0.03  Score=41.89  Aligned_cols=41  Identities=17%  Similarity=0.386  Sum_probs=30.7

Q ss_pred             CCCCCcccccccccccccccc----------ccccccccccceEcCCCCCC
Q 022481            4 EPPAFQEATRCDVCKCSFNTF----------RRRHHCRCCGRTLCHEHSSD   44 (296)
Q Consensus         4 ~w~~~~~~~~C~~C~~~f~~~----------~r~hhCr~Cg~~~C~~c~~~   44 (296)
                      .|........|..|+++|.-.          ..|+.|..|+++||.+|=.+
T Consensus        48 ~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f   98 (112)
T TIGR00622        48 PLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVF   98 (112)
T ss_pred             cccccCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchh
Confidence            444333445799999999742          35788999999999999543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1729 consensus FYVE finger containing protein [General function prediction only]

Probab=94.22  E-value=0.0064  Score=53.48  Aligned_cols=64  Identities=27%  Similarity=0.413  Sum_probs=49.0

Q ss_pred             CCCCCCccccccccccccccccccccccccccceEcCCCCC-Cceec---CCC--CCCCceeccccchhh
Q 022481            3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSS-DQMTL---PQF--GIHTNVRVCADCFNS   66 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~-~~~~~---~~~--~~~~~~rvC~~C~~~   66 (296)
                      +.|.-+.++..|..|...|.++.|+|||+.||++||..|.. .....   +.+  -.....+.|..|+..
T Consensus        12 ~~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~   81 (288)
T KOG1729|consen   12 VDWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN   81 (288)
T ss_pred             HHHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence            46888999999999999999999999999999999999987 11111   111  124456777777765

>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.20  E-value=0.0013  Score=59.12  Aligned_cols=67  Identities=16%  Similarity=0.335  Sum_probs=57.5

Q ss_pred             CCCCCCcccccccccccccccccccccccc--ccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481            3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRC--CGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG   71 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~--Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~   71 (296)
                      +.|.-+.++..|..|-.+|..++-+-||-+  |++|||-+|+..  .+|......+.+||+-|+..+.+..
T Consensus       460 le~ql~~~ve~c~~~~aS~~slk~e~erl~qq~eqi~~~~~~Ka--tvp~l~~e~~akv~rlq~eL~~seq  528 (542)
T KOG0993|consen  460 LEWQLDDDVEQCSNCDASFASLKVEPERLHQQCEQIFCMNCLKA--TVPSLPNERPAKVCRLQHELLNSEQ  528 (542)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhHHHh--hcccccccchHHHHHHHHHHhhhcc
Confidence            568888899999999999999998888887  999999999864  5567766789999999999886553

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=93.66  E-value=0.011  Score=37.66  Aligned_cols=30  Identities=23%  Similarity=0.528  Sum_probs=19.7

Q ss_pred             cccccccccccc------ccccccccccceEcCCCC
Q 022481           13 RCDVCKCSFNTF------RRRHHCRCCGRTLCHEHS   42 (296)
Q Consensus        13 ~C~~C~~~f~~~------~r~hhCr~Cg~~~C~~c~   42 (296)
                      .|..|+++|...      ..++.|..|+++||.+|=
T Consensus         1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD   36 (51)
T PF07975_consen    1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCD   36 (51)
T ss_dssp             EETTTTEE-TTS-------EEE--TTTT--B-HHHH
T ss_pred             CCccCCCCCCCcccccccCCeEECCCCCCccccCcC
Confidence            488999999875      368999999999999884

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>KOG1841 consensus Smad anchor for receptor activation [Defense mechanisms]

Probab=93.50  E-value=0.17  Score=51.48  Aligned_cols=55  Identities=20%  Similarity=0.140  Sum_probs=45.6

Q ss_pred             CCCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481            2 SIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   69 (296)
Q Consensus         2 ~~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   69 (296)
                      +-.|.+|.-+..|+.|.+.|.++.+|||||  |.++          +... ..+..|+|..|...+..
T Consensus       648 ksVw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls----------~~~~-s~~~~~~~n~t~s~~rn  702 (1287)
T KOG1841|consen  648 KSVWFADGIAPNGELAETRFTFTGERHHSR--GKLS----------LLYS-SRKEARPCNITHSVLRN  702 (1287)
T ss_pred             cceeccCCcCCCceecccceeeeccccccc--cccc----------cccc-ccccCCCCcccCccchh
Confidence            457999999999999999999999999999  8887          1122 24678999999988765

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=92.18  E-value=0.027  Score=46.35  Aligned_cols=32  Identities=31%  Similarity=0.716  Sum_probs=25.1

Q ss_pred             CCcccccccccccccccc---c---------cccccccccceEc
Q 022481            7 AFQEATRCDVCKCSFNTF---R---------RRHHCRCCGRTLC   38 (296)
Q Consensus         7 ~~~~~~~C~~C~~~f~~~---~---------r~hhCr~Cg~~~C   38 (296)
                      ++.+.-.|.+|+|.|++-   +         |||-|+.||+-|=
T Consensus       113 sd~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfn  156 (267)
T KOG3576|consen  113 SDQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFN  156 (267)
T ss_pred             CCCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCccc
Confidence            456677899999999843   2         6888999998873

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.83  E-value=0.38  Score=33.45  Aligned_cols=47  Identities=23%  Similarity=0.248  Sum_probs=39.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481          200 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES  253 (296)
Q Consensus       200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~  253 (296)
                      .-|..|+..|+.++++.+++.+ .++      ...|..|+..-+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3689999999999999999765 222      3579999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.72  E-value=0.25  Score=34.35  Aligned_cols=48  Identities=17%  Similarity=0.143  Sum_probs=40.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481          232 MSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  286 (296)
Q Consensus       232 ~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  286 (296)
                      ..-|..|+..|+.++++.+++.+ .++      ...|..|+...+.+++++|+++
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            35688999999999999999765 222      3579999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=91.33  E-value=0.085  Score=42.13  Aligned_cols=26  Identities=35%  Similarity=0.892  Sum_probs=19.9

Q ss_pred             ccccccccccc------------ccccccccccccceE
Q 022481           12 TRCDVCKCSFN------------TFRRRHHCRCCGRTL   37 (296)
Q Consensus        12 ~~C~~C~~~f~------------~~~r~hhCr~Cg~~~   37 (296)
                      ..|..|+.+++            ..+|+++|+.||..|
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f   38 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF   38 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence            36899998772            355779999998877

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.88  E-value=0.5  Score=39.91  Aligned_cols=55  Identities=18%  Similarity=0.311  Sum_probs=43.9

Q ss_pred             HHHHHHc--CCHHHHHHHHHcC-CCCccc---CCCCCcHHHHHHHcCCHHHHHHHHHCCCC
Q 022481          202 LRDAIKN--GDAAAVKKLLSEG-VDANFC---DKQGMSLLHLAALFNRTDIAFILMESGAN  256 (296)
Q Consensus       202 Lh~A~~~--g~~~~v~~Ll~~g-advn~~---d~~g~TpLh~A~~~g~~~iv~~LL~~ga~  256 (296)
                      +-|+...  .+..+++..|.+| +++|.+   -..|.|-|.-|..+++.+++.+||++||-
T Consensus       219 ieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  219 IEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            4444433  4677888888887 677753   46799999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.38  E-value=0.042  Score=47.62  Aligned_cols=53  Identities=21%  Similarity=0.585  Sum_probs=44.1

Q ss_pred             CCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhh
Q 022481            6 PAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   67 (296)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   67 (296)
                      .+-..+.+|..|+..|.-+.+||-|--|-+-||..|+..         ....|.|..|...-
T Consensus        39 s~~~~~p~ckacg~~f~~~~~k~~c~dckk~fc~tcs~v---------~~~lr~c~~c~r~~   91 (350)
T KOG4275|consen   39 SSSSQAPHCKACGEEFEDAQSKSDCEDCKKEFCATCSRV---------SISLRTCTSCRRVN   91 (350)
T ss_pred             CcccccchhhhhchhHhhhhhhhhhhhhhHHHHHHHHHh---------cccchhhhHHHHHH
Confidence            445567799999999999999999999999999999932         24578899998653

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=89.29  E-value=0.21  Score=37.38  Aligned_cols=31  Identities=19%  Similarity=0.588  Sum_probs=23.5

Q ss_pred             CCccccccccccccccccccc-cccccccceE
Q 022481            7 AFQEATRCDVCKCSFNTFRRR-HHCRCCGRTL   37 (296)
Q Consensus         7 ~~~~~~~C~~C~~~f~~~~r~-hhCr~Cg~~~   37 (296)
                      .|-.-..|..|+++|-=|+|. .+|.+||.+|
T Consensus         5 elGtKR~Cp~CG~kFYDLnk~PivCP~CG~~~   36 (108)
T PF09538_consen    5 ELGTKRTCPSCGAKFYDLNKDPIVCPKCGTEF   36 (108)
T ss_pred             ccCCcccCCCCcchhccCCCCCccCCCCCCcc
Confidence            455567899999999977664 4488888776

The function of members of this family is unknown.

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=88.72  E-value=0.24  Score=29.74  Aligned_cols=26  Identities=35%  Similarity=0.944  Sum_probs=19.6

Q ss_pred             cccccccccccccccccccccceEcCCC
Q 022481           14 CDVCKCSFNTFRRRHHCRCCGRTLCHEH   41 (296)
Q Consensus        14 C~~C~~~f~~~~r~hhCr~Cg~~~C~~c   41 (296)
                      |..|++.-.++  -..|+.||.+||...
T Consensus         1 C~~C~~~~~l~--~f~C~~C~~~FC~~H   26 (39)
T smart00154        1 CHFCRKKVGLT--GFKCRHCGNLFCGEH   26 (39)
T ss_pred             CcccCCccccc--CeECCccCCcccccc
Confidence            56787754444  678999999998765

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=88.50  E-value=0.23  Score=29.23  Aligned_cols=25  Identities=24%  Similarity=0.761  Sum_probs=18.8

Q ss_pred             cccccccccccc-------ccccccccccceE
Q 022481           13 RCDVCKCSFNTF-------RRRHHCRCCGRTL   37 (296)
Q Consensus        13 ~C~~C~~~f~~~-------~r~hhCr~Cg~~~   37 (296)
                      .|..|+++|.+-       .++-.|..||.+|
T Consensus         4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVF   35 (36)
T ss_pred             ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEe
Confidence            588888888743       2678888888876

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=88.04  E-value=0.31  Score=33.19  Aligned_cols=57  Identities=19%  Similarity=0.474  Sum_probs=33.2

Q ss_pred             ccccccccccccccccccccccce-----EcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481           13 RCDVCKCSFNTFRRRHHCRCCGRT-----LCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG   71 (296)
Q Consensus        13 ~C~~C~~~f~~~~r~hhCr~Cg~~-----~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~   71 (296)
                      .|..|+........+.||..|+.-     +|.+|-..-..|..=|  ----.|..|+..+++.+
T Consensus         3 ~CP~C~~~L~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACG--AvdYFC~~c~gLiSKkr   64 (70)
T PF07191_consen    3 TCPKCQQELEWQGGHYHCEACQKDYKKEAFCPDCGQPLEVLKACG--AVDYFCNHCHGLISKKR   64 (70)
T ss_dssp             B-SSS-SBEEEETTEEEETTT--EEEEEEE-TTT-SB-EEEEETT--EEEEE-TTTT-EE-TTT
T ss_pred             cCCCCCCccEEeCCEEECccccccceecccCCCcccHHHHHHHhc--ccceeeccCCceeecce
Confidence            688999998887889999999865     6888876544443333  23467888888776553

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=87.88  E-value=0.29  Score=37.33  Aligned_cols=31  Identities=13%  Similarity=0.226  Sum_probs=22.8

Q ss_pred             CCccccccccccccccccc-cccccccccceE
Q 022481            7 AFQEATRCDVCKCSFNTFR-RRHHCRCCGRTL   37 (296)
Q Consensus         7 ~~~~~~~C~~C~~~f~~~~-r~hhCr~Cg~~~   37 (296)
                      .|-....|+.|+++|--++ +-.+|.+||..|
T Consensus         5 elGtKr~Cp~cg~kFYDLnk~p~vcP~cg~~~   36 (129)
T TIGR02300         5 DLGTKRICPNTGSKFYDLNRRPAVSPYTGEQF   36 (129)
T ss_pred             hhCccccCCCcCccccccCCCCccCCCcCCcc
Confidence            4455678999999998554 556777777765

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PHA02768 hypothetical protein; Provisional

Probab=86.78  E-value=0.25  Score=32.01  Aligned_cols=26  Identities=23%  Similarity=0.549  Sum_probs=17.9

Q ss_pred             cccccccccccccc------ccc----ccccccceE
Q 022481           12 TRCDVCKCSFNTFR------RRH----HCRCCGRTL   37 (296)
Q Consensus        12 ~~C~~C~~~f~~~~------r~h----hCr~Cg~~~   37 (296)
                      -.|..|++.|+...      |+|    .|-.||++|
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~k~~kc~~C~k~f   41 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRIS   41 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcCCcccCCccccee
Confidence            37999999998431      334    477777766

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=86.39  E-value=0.37  Score=28.51  Aligned_cols=25  Identities=28%  Similarity=0.769  Sum_probs=19.0

Q ss_pred             cccccccccccc-------ccccccccccceE
Q 022481           13 RCDVCKCSFNTF-------RRRHHCRCCGRTL   37 (296)
Q Consensus        13 ~C~~C~~~f~~~-------~r~hhCr~Cg~~~   37 (296)
                      .|..|+..|.+-       .++..|..||.+|
T Consensus         4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f   35 (37)
T PF13719_consen    4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVF   35 (37)
T ss_pred             ECCCCCceEEcCHHHcccCCcEEECCCCCcEe
Confidence            688888888743       3678888888876

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=86.28  E-value=1.5  Score=35.82  Aligned_cols=79  Identities=18%  Similarity=0.027  Sum_probs=51.7

Q ss_pred             HHHHHHHcCCHHHH----HHHHHcCCCCcccCC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhc
Q 022481          201 GLRDAIKNGDAAAV----KKLLSEGVDANFCDK--QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVT  274 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v----~~Ll~~gadvn~~d~--~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~  274 (296)
                      -+-.|....++++.    ++++++...-+..|.  --..-|.+|+..|-...+.-.|++|.+++.      ++|-.|+..
T Consensus       107 iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~y  180 (192)
T PF03158_consen  107 IFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKY  180 (192)
T ss_pred             hhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHh
Confidence            46677777777643    223344322211111  112456778888888888888888887774      788888888


Q ss_pred             CcHHHHHHHHH
Q 022481          275 LQYKMRQKMEE  285 (296)
Q Consensus       275 g~~~iv~~Ll~  285 (296)
                      ++..|+.+++.
T Consensus       181 nhRkIL~yfi~  191 (192)
T PF03158_consen  181 NHRKILDYFIR  191 (192)
T ss_pred             hHHHHHHHhhc
Confidence            88888888764

These proteins may be involved in promoting survival of infected macrophages [].

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=84.31  E-value=0.17  Score=31.12  Aligned_cols=33  Identities=21%  Similarity=0.611  Sum_probs=24.0

Q ss_pred             ccccccccccccccccccccccceEcCCCCCCce
Q 022481           13 RCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQM   46 (296)
Q Consensus        13 ~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~   46 (296)
                      +|.+|.+.| .-.++-.=-.||.+||..|.....
T Consensus         1 ~C~~C~~~~-~~~~~~~l~~CgH~~C~~C~~~~~   33 (44)
T PF14634_consen    1 HCNICFEKY-SEERRPRLTSCGHIFCEKCLKKLK   33 (44)
T ss_pred             CCcCcCccc-cCCCCeEEcccCCHHHHHHHHhhc
Confidence            478888888 223445556899999999987644

>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]

Probab=81.00  E-value=0.75  Score=40.43  Aligned_cols=41  Identities=27%  Similarity=0.532  Sum_probs=33.0

Q ss_pred             CCCCCCcccccccccccccc----------ccccccccccccceEcCCCCC
Q 022481            3 IEPPAFQEATRCDVCKCSFN----------TFRRRHHCRCCGRTLCHEHSS   43 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~----------~~~r~hhCr~Cg~~~C~~c~~   43 (296)
                      ++|-..-....|..|+-+|-          +...|+.|..|-.-||.+|-.
T Consensus       354 ~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdv  404 (421)
T COG5151         354 KPEGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDV  404 (421)
T ss_pred             ccCCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHH
Confidence            45666667789999999875          235799999999999999953

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-07
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-07
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		9e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		9e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-06
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		5e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		8e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		8e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-05
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-05
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		5e-05
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		6e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-05
1uoh_A	226	Human Gankyrin Length = 226		7e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		7e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-04
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		3e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		6e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		8e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		8e-04

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L +A KNG A  VKKLLS+G D N   K G + LHLAA     +I  +L+  GA+++ ++
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 262 AQGESPLDCAPVTLQYKM 279
             G +P   A     +++
Sbjct: 73  KDGNTPEHLAKKNGHHEI 90

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA+++ K+  G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 69  RTPLHLA 75

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA+++ K+
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 262 AQGESPLDCA 271
             G +PL  A
Sbjct: 66  KNGRTPLHLA 75

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A+KN      +KLLS+G + N  D  G + L  + +F  +++++ L+E GAN++ +N +G
Sbjct: 75  AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134
Query: 265 ESPLDCA 271
           E+PL  A
Sbjct: 135 ETPLIVA 141

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 41/72 (56%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A  NG    V+ LL  G D N  D  GM+ L LAALF   +I  +L+++GA+++  +
Sbjct: 51  LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110
Query: 262 AQGESPLDCAPV 273
            +G +PL  A +
Sbjct: 111 MEGHTPLHLAAM 122

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA+    +I  +L++ GA++D
Sbjct: 15  GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKM 283
             +  G +PL  A +T   ++ + +
Sbjct: 75  AADVYGFTPLHLAAMTGHLEIVEVL 99

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A +NG+   VK LL  G D N  D  G + LHLAA     ++  +L+  GA+ +
Sbjct: 5   GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 64
Query: 259 CKNAQGESPLDCA 271
            K++ G++PL  A
Sbjct: 65  AKDSDGKTPLHLA 77

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  DK G++ LHLAA+ +  +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPL 268
             +A GE+PL
Sbjct: 75  AIDAIGETPL 84

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A +NG+   VK L+  G D N  D  G + LH AA     +I  +L+  GA+++
Sbjct: 5   GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64
Query: 259 CKNAQGESPLDCA 271
            K++ G +PL  A
Sbjct: 65  AKDSDGRTPLHYA 77

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 53/95 (55%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA+    +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST 293
             +  G++PL  A +    ++ + + ++  +V +T
Sbjct: 75  AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A +NG    VK L+S+G D N  D  G + LH AA     ++  +L+  GA+++  +
Sbjct: 74  LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133
Query: 262 AQGESPLDCA 271
           + G +PLD A
Sbjct: 134 SDGRTPLDLA 143

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D QG + LHLAA     +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCA 271
            ++  G +PL  A
Sbjct: 75  ARDTDGWTPLHLA 87

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA F   +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAP 272
            K++ G +PL  A 
Sbjct: 75  AKDSLGVTPLHLAA 88

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A +NG+   VK LL  G D N  D  G + LH AA     +I  +L+  GA+ +
Sbjct: 5   GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 259 CKNAQGESPLDCA 271
            K++ G +PL  A
Sbjct: 65  AKDSDGRTPLHYA 77

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA F   +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAP 272
             ++ G +PL  A 
Sbjct: 75  ADDSLGVTPLHLAA 88

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA +   +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKM 283
             +  G +PL  A +    ++ + +
Sbjct: 75  AIDIXGSTPLHLAALIGHLEIVEVL 99

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA +   +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKM 283
             +  G +PL  A +    ++ + +
Sbjct: 75  AIDIMGSTPLHLAALIGHLEIVEVL 99

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  DK G + LHLAA     +I  +L+++GA+++
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 259 CKNAQGESPLDCA 271
            K+  G +PL  A
Sbjct: 63  AKDKDGYTPLHLA 75

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  DK G + LHLAA     +I  +L+++GA+++
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 259 CKNAQGESPLDCA 271
            K+  G +PL  A
Sbjct: 63  AKDKDGYTPLHLA 75

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  DK G + LHLAA     +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 74
Query: 259 CKNAQGESPLDCA 271
            K+  G +PL  A
Sbjct: 75  AKDKDGYTPLHLA 87

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L   + NG    ++ LL    D N  DK G + LHLAA     +I  +L++ GA+++  +
Sbjct: 51  LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD 110
Query: 262 AQGESPLDCAP 272
            QG +PL  A 
Sbjct: 111 YQGYTPLHLAA 121

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A  NG    V+ LL  G D N  D  G++ LHLAA     +I  +L++ GA+++  +
Sbjct: 43  LHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD 102
Query: 262 AQGESPLDCAPVTLQYKMRQKM 283
             G +PL  A ++ Q ++ + +
Sbjct: 103 RAGWTPLHLAALSGQLEIVEVL 124

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 45/75 (60%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D++G + LHLAA ++  +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPV 273
             +  G +PL  A +
Sbjct: 75  AHDNDGSTPLHLAAL 89

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA     +I  +L++ GA+++
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKMEE 285
            ++  G +PL  A      ++ + + E
Sbjct: 75  ARDIWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA +   +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAP 272
             +  G +PL  A 
Sbjct: 75  AYDTLGSTPLHLAA 88

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D+ G++ LHLAA     +I  +L++ GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74
Query: 259 CKNAQGESPLDCAPV 273
            ++  G +PL  A +
Sbjct: 75  AEDNFGITPLHLAAI 89

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 196 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 255
           ++N   L  A + G  + V +L+  G D +  D +G S +HLAA F  T I   L+  G 
Sbjct: 74  DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 256 NMDCKNAQGESPLDCA 271
           ++D  +  G +PL  A
Sbjct: 134 DVDMMDQNGMTPLMWA 149

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA     +I  +L++ GA+++
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKMEE 285
             ++ G +PL  A      ++ + + E
Sbjct: 75  ASDSWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 36/63 (57%)
Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
           GD   V +LL  G D N+ +  G++ LH A + +  D+   L+E+GAN++  + +G  PL
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPL 110
Query: 269 DCA 271
             A
Sbjct: 111 HAA 113

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G  L +A + G    V+ L++ G D N  D  G + LHLAA     +I  +L++ GA++D
Sbjct: 15  GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD 74
Query: 259 CKNAQGESPLDCAP 272
             +  G +PL  A 
Sbjct: 75  ASDVFGYTPLHLAA 88

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G++ LHLAA     +I  +L++ GA+++
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKMEE 285
             +  G +PL  A      ++ + + E
Sbjct: 75  ASDIWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A K G    V+ LL  G D N  D  G + LHLAA     +I  +L++ GA+++ K+
Sbjct: 51  LHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD 110
Query: 262 AQGESPLDCAP 272
            +G +PL  A 
Sbjct: 111 YEGFTPLHLAA 121

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 42/71 (59%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  DK G + LHLAA     +I  +L+++GA+++
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
Query: 259 CKNAQGESPLD 269
            ++  G++  D
Sbjct: 63  AQDKFGKTAFD 73

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    VK LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+
Sbjct: 78  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 137
Query: 262 ---------AQGESPLDCAPVTLQYKMRQKMEEDKNN 289
                    A  +  L    + L YK    +++ + N
Sbjct: 138 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN 174

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    VK LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+
Sbjct: 77  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 262 ---------AQGESPLDCAPVTLQYKMRQKMEEDKNN 289
                    A  +  L    + L YK    +++ + N
Sbjct: 137 HYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN 173

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA     +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAPVTLQYKMRQKM 283
             +  G +PL  A  T   ++ + +
Sbjct: 75  ASDLTGITPLHLAAATGHLEIVEVL 99

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAP 272
           V+ LL  G D N  D  G + LHLAA     +I  +L++ GA+++ K+A G +PL  A 
Sbjct: 51  VEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAA 109

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L + G D N  D  G + LHLAA+    +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAP 272
                G +PL  A 
Sbjct: 75  ATGNTGRTPLHLAA 88

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    VK LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 262 ---------AQGESPLDCAPVTLQYKMRQKMEEDKNN 289
                    A  +  L    + L YK    +++ + N
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 183 VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN 242
           + NGA    + EY +    L  A  +G    V+ LL  G D N  D  G + LHLAA   
Sbjct: 34  MANGADVNAKDEYGLTP--LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 243 RTDIAFILMESGANMDCKNAQGESPLDCA 271
             +IA +L++ GA+++ ++  G++  D +
Sbjct: 92  HLEIAEVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    VK LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+
Sbjct: 77  LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 262 ---------AQGESPLDCAPVTLQYKMRQKMEEDKNN 289
                    A  +  L    + L YK    +++ + N
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN 173

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A + G A  V  LLS+  + N  +K G++ LHL A      +A +L++ G  +D   
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308
Query: 262 AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV 296
             G +PL  A      K+ + + + + +V + T +
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL 343

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G  L  A +N   A VKKLL  G D N    Q  S LH  A     ++A +LM+ GA+  
Sbjct: 135 GTPLYLACENQQRACVKKLLESGADVNQGKGQD-SPLHAVARTASEELACLLMDFGADTQ 193
Query: 259 CKNAQGESPLDCAP 272
            KNA+G+ P++  P
Sbjct: 194 AKNAEGKRPVELVP 207

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 41/71 (57%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D    DK G + LHLAA     ++  +L+E+GA+++
Sbjct: 7   GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN 66
Query: 259 CKNAQGESPLD 269
            ++  G++  D
Sbjct: 67  AQDKFGKTAFD 77

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A  +G    V+KLL    D N  ++ G   LH A  + +  +A  L+ +GA +   N
Sbjct: 76  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135
Query: 262 AQGESPLDCAPVTLQYKMRQKMEEDKNNV 290
             GE P+D A   L+  +R++ E+   N+
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           G+ L +A + G    V+ L++ G D N  D  G + LHLAA     +I  +L+++GA+++
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN 74
Query: 259 CKNAQGESPLDCAP 272
             +  G +PL  A 
Sbjct: 75  ALDFSGSTPLHLAA 88

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 33/64 (51%)
Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV 273
           VK LLS+G D N  D +    LH AA     DIA IL+ +  ++   N  G+SPL  A  
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186
Query: 274 TLQY 277
             +Y
Sbjct: 187 ENRY 190

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A  +G    V+KLL    D N  ++ G   LH A  + +  +A  L+ +GA +   N
Sbjct: 71  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 130
Query: 262 AQGESPLDCAPVTLQYKMRQKMEEDKNNV 290
             GE P+D A   L+  +R++ E+   N+
Sbjct: 131 KYGEMPVDKAKAPLRELLRERAEKMGQNL 159

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	2e-25
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	2e-20
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	1e-18
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	2e-18
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	3e-18
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	3e-17
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	9e-17
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	5e-16
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	3e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-08
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-10
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-09
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-06
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-10
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-11
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-10
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	2e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-08
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-09
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-05
2rfa_A	232	Transient receptor potential cation channel subfa	4e-10
2rfa_A	232	Transient receptor potential cation channel subfa	1e-09
2rfa_A	232	Transient receptor potential cation channel subfa	4e-08
2rfa_A	232	Transient receptor potential cation channel subfa	2e-07
2rfa_A	232	Transient receptor potential cation channel subfa	1e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-09
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	7e-09
2etb_A	256	Transient receptor potential cation channel subfam	1e-08
2etb_A	256	Transient receptor potential cation channel subfam	4e-08
2etb_A	256	Transient receptor potential cation channel subfam	4e-06
2etb_A	256	Transient receptor potential cation channel subfam	6e-06
2etb_A	256	Transient receptor potential cation channel subfam	8e-05
2pnn_A	273	Transient receptor potential cation channel subfa	5e-08
2pnn_A	273	Transient receptor potential cation channel subfa	3e-06
2pnn_A	273	Transient receptor potential cation channel subfa	7e-05
2pnn_A	273	Transient receptor potential cation channel subfa	3e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-04
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	4e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	5e-04

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73

 Score = 95.5 bits (238), Expect = 2e-25
 Identities = 27/64 (42%), Positives = 36/64 (56%)

Query: 2  SIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCA 61
          S  P  + ++  C +C   F+   R+HHCR CG   C EHSS+ + LP  GI+  VRVC 
Sbjct: 2  SKTPADWIDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCD 61

Query: 62 DCFN 65
           CF 
Sbjct: 62 SCFE 65

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84

 Score = 82.5 bits (204), Expect = 2e-20
 Identities = 24/63 (38%), Positives = 33/63 (52%)

Query: 9  QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 68
          ++A  C+ C C F T  RRHHCR CG  LC + S  +  +P  GI    RVC  C+ +  
Sbjct: 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78

Query: 69 RTG 71
           + 
Sbjct: 79 SSN 81

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226

 Score = 81.7 bits (201), Expect = 1e-18
 Identities = 25/61 (40%), Positives = 34/61 (55%)

Query: 9   QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 68
            +A  C  C+  F    R+HHCR CG+  C + SS   T+P+FGI   VRVC  C+   +
Sbjct: 162 VDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221

Query: 69  R 69
           R
Sbjct: 222 R 222

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88

 Score = 77.5 bits (191), Expect = 2e-18
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 69
            +RC  C   F  F++ + C+ CGR  C+   S    +P+ G  T  +VC  C    +R
Sbjct: 8  MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGN-TQQKVCKQCHTILTR 66

Query: 70 TGKDN 74
             DN
Sbjct: 67 GSSDN 71

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220

 Score = 80.6 bits (198), Expect = 3e-18
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 5   PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
            P + +   C  C+  F    R+HHCR CG+  C + ++ Q  LP++GI   VRVC  CF
Sbjct: 155 APNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCF 214

Query: 65  NSSSR 69
            +  R
Sbjct: 215 AALQR 219

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90

 Score = 74.1 bits (182), Expect = 3e-17
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 9  QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS 68
           EA  C  C+  F   +RRHHCR CG+  C    + +  L         RVC  C+ + S
Sbjct: 18 SEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYLE--KEARVCVVCYETIS 75

Query: 69 RTGKDNLQVSSDGVN 83
          +       +S  G N
Sbjct: 76 KAQAFERMMSPTGSN 90

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84

 Score = 73.0 bits (179), Expect = 9e-17
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIH------TNVRVCADC 63
              C  C  +F+  ++R  C  CG + C    S ++     G          V VCA C
Sbjct: 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASC 72

Query: 64 FNSSSRTGKDN 74
            + S++G  +
Sbjct: 73 NQTLSKSGPSS 83

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82

 Score = 70.5 bits (173), Expect = 5e-16
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 9  QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 65
           EAT C  C+  F+  RR+HHCR CG   C+  SS+++ LP +     VRVC  C  
Sbjct: 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYP--KPVRVCDSCHT 71

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125

 Score = 70.0 bits (171), Expect = 3e-15
 Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 10  EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 65
           E   C  C   F+   RRHHCR CG   C E S+     P       VRVC  CFN
Sbjct: 68  EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSK--KPVRVCDACFN 121

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 183 VTNGATDKPRMEYEVNGE-GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 241
           +    + +      +N    L DA   G+   V++ + E  D +  +++G++ LH A   
Sbjct: 5   LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG 64

Query: 242 NRTDIAFILMESGANMDCKNAQGESPLDCA 271
               I   L+ +GAN++  ++ G +PL CA
Sbjct: 65  ANYSIVDFLITAGANVNSPDSHGWTPLHCA 94

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L +AI   + + V  L++ G + N  D  G + LH AA  N T I   L++ GA +    
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT 117

Query: 262 AQ-GESPLDCA 271
              G +  +  
Sbjct: 118 LSDGATAFEKC 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 1/68 (1%)

Query: 204 DAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 263
           D  + G A     L          +   +  L   +     D           +  ++  
Sbjct: 129 DPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS-AEFGDELSFREGESVTVLRRDGP 187

Query: 264 GESPLDCA 271
            E+    A
Sbjct: 188 EETDWWWA 195

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 65.9 bits (162), Expect = 7e-14
 Identities = 22/67 (32%), Positives = 35/67 (52%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A+KNGD   VK  +++G D N   + G   LH AA   + +I   L+  GA+++  +   
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 74  ITPLLSA 80

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 61.6 bits (151), Expect = 2e-12
 Identities = 16/67 (23%), Positives = 26/67 (38%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A   G    ++ LL +G D N  DK  ++ L  A          +L+  GA+   K   G
Sbjct: 47  AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106

Query: 265 ESPLDCA 271
            +  +  
Sbjct: 107 LTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI 246
           L  A+  G  + VK LLS+G D       G++            +
Sbjct: 77  LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 38.1 bits (90), Expect = 6e-04
 Identities = 7/37 (18%), Positives = 11/37 (29%)

Query: 235 LHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
              A      D     +  G +++     G  PL  A
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYA 47

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.1 bits (170), Expect = 9e-14
 Identities = 20/67 (29%), Positives = 32/67 (47%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A   G    +K L+    D N  D  G + LH AA + + +   IL+E+  +M+  N  G
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG 265

Query: 265 ESPLDCA 271
           ++  D A
Sbjct: 266 QTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 23/67 (34%), Positives = 38/67 (56%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A  +GD   V +LL  G D N+ +  G++ LH A + +  D+   L+E+GAN++  + +G
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 265 ESPLDCA 271
             PL  A
Sbjct: 107 WIPLHAA 113

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.8 bits (159), Expect = 3e-12
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A  + +   VK L+  G + N  D +G   LH AA     DIA  L+  GA++   N++G
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

Query: 265 ESPLDCA 271
           ++PLD A
Sbjct: 140 DTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 63.3 bits (155), Expect = 9e-12
 Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 194 EYEVNGEG------LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA 247
           + EVN +G       ++  +     A + L S  ++     K G + LH+AA    T++ 
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215

Query: 248 FILMESGANMDCKNAQGESPLDCA 271
            +L+++  +++ K+  G +PL  A
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAA 239

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
               G    ++  + +          G   L  A     T+    L+E GA+++  N  G
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKFDDGAVFLA-ACSSGDTEEVLRLLERGADINYANVDG 73

Query: 265 ESPLDCA 271
            + L  A
Sbjct: 74  LTALHQA 80

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQ 263
           A   G     + L+S+G      + +G + L +A      ++    +   G +++    +
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172

Query: 264 GESPL 268
            E  +
Sbjct: 173 EERIM 177

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 9/57 (15%), Positives = 17/57 (29%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           A   G   A + L+    D    +K G +   +A       +  +  +       K 
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 5/44 (11%), Positives = 7/44 (15%)

Query: 228 DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           D +      L             +        K   G   L   
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAAC 48

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 23/70 (32%), Positives = 34/70 (48%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A  +G    V+KLL    D N  ++ G   LH A  + +  +A  L+ +GA +   N
Sbjct: 76  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135

Query: 262 AQGESPLDCA 271
             GE P+D A
Sbjct: 136 KYGEMPVDKA 145

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 62.8 bits (154), Expect = 3e-12
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 205 AIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 263
             + G+A AV+  L     D N  D  G S LH A    R+ +  +L+  GA ++  N  
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71

Query: 264 GESPLDCA 271
            ++PL  A
Sbjct: 72  DDTPLHLA 79

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A + G +A V+ L+  G   N  ++   + LHLAA     DI   L++  A+++  N  G
Sbjct: 46  ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105

Query: 265 ESPLDCA 271
             PL  A
Sbjct: 106 NVPLHYA 112

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.0 bits (126), Expect = 2e-08
 Identities = 11/57 (19%), Positives = 21/57 (36%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           A   G     + L++ G   + C+K G   +  A    R  +     + G N++   
Sbjct: 112 ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 228 DKQGMSLLHLAALFNRTDIAFILMESGAN-MDCKNAQGESPLDCA 271
             + M  +             + +++  N ++  +  G SPL  A
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA 46

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 25/67 (37%), Positives = 35/67 (52%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A   G+   VK LL    D N   K G S LH AA    TDI  +L+++GA+ +  ++ G
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG 377

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 378 TTPLAIA 384

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 23/70 (32%), Positives = 35/70 (50%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A + G A  V  LLS+  + N  +K G++ LHL A      +A +L++ G  +D   
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308

Query: 262 AQGESPLDCA 271
             G +PL  A
Sbjct: 309 RMGYTPLHVA 318

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 19/67 (28%), Positives = 32/67 (47%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A + G    V  LL +        K+G + LH+AA + +  +A +L+E  A+ +     G
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 180 LTPLHVA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.3 bits (168), Expect = 4e-13
 Identities = 20/67 (29%), Positives = 36/67 (53%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A+ + +   VK LL  G   +     G + LH+AA  N+ ++A  L++ G + + ++ QG
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 246 VTPLHLA 252

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.5 bits (166), Expect = 7e-13
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    VK LL  G   N  + +  + LH+AA    T++A  L+++ A ++ K 
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77

Query: 262 AQGESPLDCA 271
              ++PL CA
Sbjct: 78  KDDQTPLHCA 87

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.1 bits (165), Expect = 9e-13
 Identities = 20/67 (29%), Positives = 28/67 (41%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A K G     + LL      N   K G++ LH+A   N  DI  +L+  G +       G
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 213 YTPLHIA 219

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 21/67 (31%), Positives = 30/67 (44%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A K       + LL  G  AN    QG++ LHLAA     ++  +L+   AN +  N  G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278

Query: 265 ESPLDCA 271
            +PL   
Sbjct: 279 LTPLHLV 285

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 65.6 bits (161), Expect = 3e-12
 Identities = 21/70 (30%), Positives = 30/70 (42%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A + G     K LL      N   K   + LH AA    T++  +L+E+ AN +   
Sbjct: 51  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110

Query: 262 AQGESPLDCA 271
             G +PL  A
Sbjct: 111 TAGHTPLHIA 120

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 65.2 bits (160), Expect = 3e-12
 Identities = 21/70 (30%), Positives = 30/70 (42%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A + G    VK LL    + N     G + LH+AA     +    L+E  A+  C  
Sbjct: 84  LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143

Query: 262 AQGESPLDCA 271
            +G +PL  A
Sbjct: 144 KKGFTPLHVA 153

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 65.2 bits (160), Expect = 3e-12
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
             + G       L+  GV  +   + G + LH+A+ +    +   L++  A+++ K   G
Sbjct: 285 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 344

Query: 265 ESPLDCA 271
            SPL  A
Sbjct: 345 YSPLHQA 351

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.5 bits (140), Expect = 1e-09
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 3/73 (4%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM---ESGANMD 258
           L  A + G    V  LL  G   N     G + L +A       +  +L    +  + + 
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 407

Query: 259 CKNAQGESPLDCA 271
             +    S  +  
Sbjct: 408 VSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.7 bits (138), Expect = 2e-09
 Identities = 15/53 (28%), Positives = 27/53 (50%)

Query: 219 SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           S G+      + G++ LH+A+      I   L++ GA+ +  N + E+PL  A
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA 54

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 67.5 bits (166), Expect = 2e-13
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A + G  + V +L+  G D +  D +G S +HLAA F  T I   L+  G ++D  +
Sbjct: 80  LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139

Query: 262 AQGESPLDCA 271
             G +PL  A
Sbjct: 140 QNGMTPLMWA 149

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 62.8 bits (154), Expect = 7e-12
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK- 260
           +  A + G     ++L+  G D    DK+ ++LLH AA+ NR D+    +  GA +D   
Sbjct: 13  IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72

Query: 261 NAQGESPLDCA 271
                +PL  A
Sbjct: 73  GDLNSTPLHWA 83

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 60.5 bits (148), Expect = 5e-11
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 263
           A +       + LL+  V  N  DK    + LH A L   T +  +L+E+GAN+D +N +
Sbjct: 150 AYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK 209

Query: 264 GESPLDCA 271
           GES LD A
Sbjct: 210 GESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           L  A  N     VK  +S+G   +        + LH A       +   LM+ GA+    
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105

Query: 261 NAQGESPLDCA 271
           + +G S +  A
Sbjct: 106 DGEGCSCIHLA 116

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 13/57 (22%), Positives = 22/57 (38%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           A+  G+   +  LL  G + +  + +G S L LA       +   L E+       N
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF-NRTDIAFILMESGANMDCK-NA 262
           A + G  + V  L+++G D +  D+ GM+ L  AA   +  D   +L+    +++     
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175

Query: 263 QGESPLDCA 271
              + L  A
Sbjct: 176 HKNTALHWA 184

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 7/47 (14%), Positives = 17/47 (36%)

Query: 225 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
              D      +  A  +   +    L+E+G ++   + +  + L  A
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWA 49

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.9 bits (167), Expect = 4e-13
 Identities = 22/70 (31%), Positives = 32/70 (45%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L +A   G     + LL  G   N  D    + LH AA  NR ++  +L+  GA+    N
Sbjct: 95  LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154

Query: 262 AQGESPLDCA 271
             G+S +D A
Sbjct: 155 CHGKSAVDMA 164

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.4 bits (158), Expect = 5e-12
 Identities = 15/67 (22%), Positives = 25/67 (37%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A +      ++ L   G   N  D  G + LH AAL        +L+  G++    + QG
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313

Query: 265 ESPLDCA 271
            +     
Sbjct: 314 FTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 63.7 bits (156), Expect = 8e-12
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
            + LL +G + N  +K  M+ LH+AA     D+  +L + GA M+  ++ G++ L  A
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 193 MEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL---FNRTDIAFI 249
           + YE  G  L  A +  D A VKK L+  +      +   + LH A       R  +A +
Sbjct: 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232

Query: 250 LMESGANMDCKNAQGESPLDCA 271
           L+  GAN++ KN    +PL  A
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVA 254

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.9 bits (154), Expect = 2e-11
 Identities = 20/67 (29%), Positives = 33/67 (49%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A    +   +  L    V+ +  D +  + LHLAA +NR  I  +L++ GA++  K+  G
Sbjct: 32  ARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG 91

Query: 265 ESPLDCA 271
             PL  A
Sbjct: 92  LVPLHNA 98

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 18/67 (26%), Positives = 31/67 (46%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A        V+ LL  G D +  DK G+  LH A  +   ++  +L++ GA ++  +   
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 125 FTPLHEA 131

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 217 LLSEGVDANFCDKQGM-SLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           L      A    +     LL  A   N   +  +L     N    + +  +PL  A
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA 65

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.6 bits (117), Expect = 8e-07
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 7/70 (10%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G     + LLS G D +    QG +   +       +    ++     M   +
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD 338

Query: 262 AQGESPLDCA 271
                 L  A
Sbjct: 339 VDY--RLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.6 bits (117), Expect = 8e-07
 Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 21/91 (23%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME--------- 252
           L +A           LLS G D    +  G S + +A      +      +         
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR 187

Query: 253 ------------SGANMDCKNAQGESPLDCA 271
                              +    E+ L CA
Sbjct: 188 EADLAKVKKTLALEIINFKQPQSHETALHCA 218

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 67.1 bits (165), Expect = 4e-13
 Identities = 19/70 (27%), Positives = 33/70 (47%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           + +A  +G   +++ L+S+G   N      +S LH A L        IL++ GA ++   
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122

Query: 262 AQGESPLDCA 271
           A   +PL  A
Sbjct: 123 ADWHTPLFNA 132

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A +N   A VKKLL  G D N   K   S LH        ++A +LM+ GA+   KNA+G
Sbjct: 197 ACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255

Query: 265 ESPLDCA 271
           + P++  
Sbjct: 256 KRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L +A  +G    V  LL  G      +    S +H AA     +    L+  G N+D K 
Sbjct: 129 LFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187

Query: 262 AQGESPLDCA 271
           +   +PL  A
Sbjct: 188 SHLGTPLYLA 197

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L +A   G  + VK LL  G   N       + L  A +    D   +L++ GA++  ++
Sbjct: 96  LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155

Query: 262 AQGESPLDCA 271
               SP+  A
Sbjct: 156 -DLASPIHEA 164

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.3 bits (142), Expect = 4e-10
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A + G    V  L++ G + +       + L+LA    +      L+ESGA+++ +    
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQ 222

Query: 265 ESPLDCA 271
           +SPL   
Sbjct: 223 DSPLHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 208 NGDAAAVK-KLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 266
            G       +LLS  +  +       S +H AA+         L+  G  ++   A   S
Sbjct: 37  AGPRDFPGIRLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS 94

Query: 267 PLDCA 271
           PL  A
Sbjct: 95  PLHEA 99

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 9/67 (13%), Positives = 17/67 (25%), Gaps = 2/67 (2%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
              +        L+  G      D +   +        R      L+ +    D  +   
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS--D 59

Query: 265 ESPLDCA 271
            SP+  A
Sbjct: 60  WSPMHEA 66

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
            ++         L+  G D    + +G   + L    +     F L   GA++ 
Sbjct: 229 VVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLF-LEREGASLP 281

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 64.3 bits (158), Expect = 7e-13
 Identities = 14/70 (20%), Positives = 28/70 (40%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           +      G+   +   + +    N  D++G + L  AA   +  +   L+++GA+     
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66

Query: 262 AQGESPLDCA 271
              ES L  A
Sbjct: 67  KGRESALSLA 76

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 22/67 (32%), Positives = 32/67 (47%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A  +G  A V+ LL  G D     K   S L LA     TDI  +L++ G +++  +  G
Sbjct: 43  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 103 GTPLLYA 109

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 24/70 (34%), Positives = 31/70 (44%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    VK LL  GVD N  D  G + L  A   N      +L+ESGA+   + 
Sbjct: 73  LSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET 132

Query: 262 AQGESPLDCA 271
             G + +D A
Sbjct: 133 DSGYNSMDLA 142

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 50.5 bits (122), Expect = 6e-08
 Identities = 11/60 (18%), Positives = 18/60 (30%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A+       VK LL  G D       G + + LA       +  ++      +    
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.4 bits (101), Expect = 4e-05
 Identities = 7/41 (17%), Positives = 14/41 (34%)

Query: 231 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
               +H  A           +E    ++  + +G +PL  A
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA 43

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 64.8 bits (159), Expect = 8e-13
 Identities = 16/67 (23%), Positives = 32/67 (47%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A +       + L       +  D +G + L++A   N  +IA  L++ GA+++ +N+  
Sbjct: 13  ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS 72

Query: 265 ESPLDCA 271
           +SP   A
Sbjct: 73  DSPYLYA 79

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCK 260
           L  A+ N D    K L+  G D N  +    S    A    RT+I   +++    +++  
Sbjct: 43  LNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKH 102

Query: 261 NAQGESPLDCA 271
           N  G + L  A
Sbjct: 103 NRYGGNALIPA 113

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.0 bits (131), Expect = 5e-09
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 185 NGATDKPRMEYEVNGEG---LRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAAL 240
           +   D      + N  G   L  A + G    VK LL +G  D +F +  G + L  A  
Sbjct: 94  HATPDL----NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149

Query: 241 FNR-----TDIAFILMESGANMDCKNAQGESPLDCA 271
                    DI  +LME+GA+   K+  G + +D A
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 10/44 (22%), Positives = 21/44 (47%)

Query: 228 DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
             +  +LL  A   +   +  IL ++   +D  + +G +PL+ A
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA 46

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 207 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 252
                  VK L+  G D +  D  G + +  A     T+I+ IL +
Sbjct: 154 NQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 63.2 bits (155), Expect = 9e-13
 Identities = 22/70 (31%), Positives = 30/70 (42%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L +A  +G    V+ LL      N    Q  S LH AA     DI  +L+  GA+ +  N
Sbjct: 47  LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106

Query: 262 AQGESPLDCA 271
             G  P+D  
Sbjct: 107 IFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.8 bits (154), Expect = 1e-12
 Identities = 21/67 (31%), Positives = 31/67 (46%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A   GD  +V+ LL  G D N  D  G + LH A       +  +L++  A ++    Q 
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76

Query: 265 ESPLDCA 271
           +SPL  A
Sbjct: 77  DSPLHDA 83

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 221 GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           G+D    + +G +LLH+A++         L+++G++ + K+  G +PL  A
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEA 50

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 47.4 bits (114), Expect = 4e-07
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 256
           L DA KNG    VK LLS G   N  +  G+  +      +   +  +  ++ ++
Sbjct: 80  LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 61.6 bits (151), Expect = 1e-12
 Identities = 27/67 (40%), Positives = 39/67 (58%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA+++ K+  G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 69  RTPLHLA 75

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 43.5 bits (104), Expect = 4e-06
 Identities = 23/54 (42%), Positives = 30/54 (55%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 255
           L  A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA
Sbjct: 39  LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.4 bits (96), Expect = 5e-05
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 231 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           G + LHLAA     ++  +L+E+GA+++ K+  G +PL  A
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.1 bits (160), Expect = 1e-12
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A  +G     + LL+   D +  +  G S LH+AA  NR D   + +   +++  KN
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN 207

Query: 262 AQGESPLDCA 271
            +GE+PL CA
Sbjct: 208 KEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 63.6 bits (156), Expect = 4e-12
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 185 NGATDKPRMEYEVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 241
           NG  D        +  G   +  A +      VK LLS+G D N  D +    LH AA  
Sbjct: 99  NGQMDV----NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS 154

Query: 242 NRTDIAFILMESGANMDCKNAQGESPLDCA 271
              DIA IL+ +  ++   N  G+SPL  A
Sbjct: 155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIA 184

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 62.8 bits (154), Expect = 7e-12
 Identities = 18/67 (26%), Positives = 32/67 (47%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A + G       L+  G + + C +   + L  AA  N  +    L+++GA +D K+A+G
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77

Query: 265 ESPLDCA 271
            + L  A
Sbjct: 78  STCLHLA 84

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCK 260
           L +A +N    AVK L+  G   +  D +G + LHLAA     ++   L+ +G  +++C+
Sbjct: 48  LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107

Query: 261 NAQGESPLDCA 271
           +  G +P+  A
Sbjct: 108 DDGGWTPMIWA 118

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.9 bits (123), Expect = 9e-08
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 222 VDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           ++     +   S LH AA     DI  +L+++GAN+D  +    +PL  A
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEA 51

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 46.3 bits (111), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 256
           A +      V   LS   D    +K+G + L  A+L ++   A  + ++  +
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.7 bits (159), Expect = 1e-12
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 185 NGATDKPRMEYEVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 241
           N ATD          +G   L  A +      ++ L++   D N  D  G S LH AA  
Sbjct: 80  NRATDL----DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 135

Query: 242 NRTDIAFILMESGANMDCKNAQGESPLDCA 271
           N  D A +L+++GAN D +N + E+PL  A
Sbjct: 136 NNVDAAVVLLKNGANKDMQNNREETPLFLA 165

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.7 bits (159), Expect = 2e-12
 Identities = 17/67 (25%), Positives = 28/67 (41%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A    +  A   LL  G + +  + +  + L LAA     + A +L++  AN D  +   
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 191

Query: 265 ESPLDCA 271
             P D A
Sbjct: 192 RLPRDIA 198

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCKNAQ 263
           A +   + A K+LL    DAN  D  G + LH A   +   +  IL+ + A ++D +   
Sbjct: 32  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 91

Query: 264 GESPLDCA 271
           G +PL  A
Sbjct: 92  GTTPLILA 99

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 214 VKKLLSEGVD-ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           +   + +G    N  D+ G + LHLAA ++R+D A  L+E+ A+ + ++  G +PL  A
Sbjct: 7   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 12/55 (21%), Positives = 17/55 (30%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 256
           L  A + G     K LL    + +  D        +A      DI  +L E    
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.0 bits (152), Expect = 1e-12
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A KNG A  VKKLLS+G D N   K G + LHLAA     +I  +L+  GA+++ ++  G
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75

Query: 265 ESPLDCA 271
            +P   A
Sbjct: 76  NTPEHLA 82

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 55.1 bits (134), Expect = 5e-10
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A KNG A  VK LL++G D N   K G +  HLA      +I  +L   GA+++ ++   
Sbjct: 49  AAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108

Query: 265 ESPL 268
               
Sbjct: 109 SHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 45.8 bits (110), Expect = 1e-06
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 224 ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
             +  K G + LH AA     +    L+  GA+++ ++  G +PL  A
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLA 49

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           L  A   G    V+ L ++  ++ N  +K G + LH AA     DI  +L+  GA  D +
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169

Query: 261 NAQGESPLDCA 271
           N + +   D A
Sbjct: 170 NIEKKLAFDMA 180

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA-FILMESGANMDCK 260
           L +A K G+ + +++ L   V  N  DK G + L+ A      DI   +  +    ++ +
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ 136

Query: 261 NAQGESPLDCA 271
           N  G++ L  A
Sbjct: 137 NKLGDTALHAA 147

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 12/70 (17%), Positives = 24/70 (34%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G A  V+ LL++G   +  + +      +A       +      + A     N
Sbjct: 144 LHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN 203

Query: 262 AQGESPLDCA 271
           A+     + +
Sbjct: 204 AEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 6/71 (8%)

Query: 207 KNGDAA---AVKK---LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
              D        K    L          +   + LH AA           +++   ++  
Sbjct: 43  DMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL 102

Query: 261 NAQGESPLDCA 271
           +  G + L  A
Sbjct: 103 DKAGSTALYWA 113

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 5/67 (7%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A+   +     +L  E  D  +      +         RT +          +  +    
Sbjct: 19  ALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL-----IPSNYVAEQAESI 73

Query: 265 ESPLDCA 271
           ++PL  A
Sbjct: 74  DNPLHEA 80

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 4/44 (9%), Positives = 9/44 (20%)

Query: 228 DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
            K G   +  A           L     ++       ++     
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKG 52

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 20/70 (28%), Positives = 39/70 (55%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L D+   G+   V++++ E  D +  + +G++ LH A     T+I   L++ G N++  +
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100

Query: 262 AQGESPLDCA 271
           + G +PL CA
Sbjct: 101 SDGWTPLHCA 110

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.0 bits (154), Expect = 8e-12
 Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L    +        + ++ G+   F +   ++LL  ++L    D+   ++    +    N
Sbjct: 9   LPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN 67

Query: 262 AQGESPLDCA 271
            +G + L  A
Sbjct: 68  DEGITALHNA 77

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L +A+  G    VK L+  GV+ N  D  G + LH AA  N   +   L+ESGA +    
Sbjct: 74  LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT 133

Query: 262 A---QGESPLDCA 271
               Q  +     
Sbjct: 134 YSDMQTAADKCEE 146

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 12/73 (16%), Positives = 17/73 (23%), Gaps = 3/73 (4%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVD---ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           L  A    +    K L+  G       + D Q  +          T  +  L      M 
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166

Query: 259 CKNAQGESPLDCA 271
             N      L   
Sbjct: 167 IMNKGVIYALWDY 179

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.4 bits (158), Expect = 3e-12
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 185 NGATDKPRMEYEVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF 241
           N ATD          +G   L  A +      ++ L++   D N  D  G S LH AA  
Sbjct: 112 NRATDL----DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV 167

Query: 242 NRTDIAFILMESGANMDCKNAQGESPLDCA 271
           N  D A +L+++GAN D +N + E+PL  A
Sbjct: 168 NNVDAAVVLLKNGANKDMQNNREETPLFLA 197

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 63.3 bits (155), Expect = 6e-12
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A    +  A   LL  G + +  + +  + L LAA     + A +L++  AN D  +
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD 220

Query: 262 AQGESPLDCA 271
                P D A
Sbjct: 221 HMDRLPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 59.8 bits (146), Expect = 1e-10
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCK 260
           L  A +   + A K+LL    DAN  D  G + LH A   +   +  IL+ + A ++D +
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 261 NAQGESPLDCA 271
              G +PL  A
Sbjct: 121 MHDGTTPLILA 131

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 58.2 bits (142), Expect = 3e-10
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 200 EGLRDAIKNGDAAAVKKLLSEGVD-ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           E      +    A +   + +G    N  D+ G + LHLAA ++R+D A  L+E+ A+ +
Sbjct: 25  ETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN 84

Query: 259 CKNAQGESPLDCA 271
            ++  G +PL  A
Sbjct: 85  IQDNMGRTPLHAA 97

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 10/57 (17%), Positives = 17/57 (29%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           A + G     K LL    + +  D        +A      DI  +L     +    +
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 16/67 (23%), Positives = 25/67 (37%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A++   A+ ++ LL  G D       G + L  A L     +A +L   GA         
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK 258

Query: 265 ESPLDCA 271
            SP   +
Sbjct: 259 LSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNA-Q 263
           +  N +     +     +     +  G + LH+A +    ++  +L ++GA+++      
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC 191

Query: 264 GESPLDCA 271
           G +PL  A
Sbjct: 192 GRTPLHLA 199

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 60.6 bits (148), Expect = 7e-11
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDK-QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 263
           A+ + DA  V+ L   G D N  +   G + LHLA       +  +L+++GA+   +   
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224

Query: 264 GESPLDCA 271
           G +PL  A
Sbjct: 225 GRTPLGSA 232

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.9 bits (141), Expect = 6e-10
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 205 AIKNGDAAAVKKLLSEGVDA---NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           A+ +     +  LL         +  +  G + LHLAA+         L  +GA +    
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 262 AQGESPLDCA 271
             G + L  A
Sbjct: 76  RGGHTALHLA 85

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A   G+A+ V+KL + G      ++ G + LHLA        A +L++   +     +  
Sbjct: 52  AAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

Query: 265 ESPL 268
               
Sbjct: 112 YLTQ 115

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 225 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ---GESPLDCA 271
            +  + G + LHLA +         L+   A  +  + Q   G++ L  A
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 8/81 (9%), Positives = 16/81 (19%), Gaps = 14/81 (17%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMS--------------LLHLAALFNRTDIAFIL 250
           A +         LL                                 +      +     
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 251 MESGANMDCKNAQGESPLDCA 271
            +    ++ +N  G +PL  A
Sbjct: 145 EDWRLQLEAENYDGHTPLHVA 165

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 5/43 (11%), Positives = 13/43 (30%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA 247
           A+   +    + L + G          +S    +   + +D  
Sbjct: 232 ALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.4 bits (153), Expect = 4e-12
 Identities = 21/67 (31%), Positives = 33/67 (49%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A   G+   V+ LL  G D +   K+  S L LA+    TDI  +L+E   +++  +  G
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 103 GTPLLYA 109

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.4 bits (153), Expect = 4e-12
 Identities = 21/70 (30%), Positives = 28/70 (40%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    V  LL   VD N  D  G + L  A   N       L+  GA++  + 
Sbjct: 73  LSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA 132

Query: 262 AQGESPLDCA 271
             G +P+D A
Sbjct: 133 DSGYTPMDLA 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.0 bits (152), Expect = 5e-12
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDA-NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           +      G+   +K+ L +G +  N  D++G + L  A+ F   +    L+E GA+    
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65

Query: 261 NAQGESPLDCA 271
             + ES L  A
Sbjct: 66  AKERESALSLA 76

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 54.7 bits (133), Expect = 2e-09
 Identities = 11/63 (17%), Positives = 21/63 (33%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A++      V+ LL+ G D       G + + LA       +  ++      +   N   
Sbjct: 109 AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVP 168

Query: 265 ESP 267
             P
Sbjct: 169 ADP 171

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
              A         +++L++   A   D+   + LH A     T+I   L++ G  ++ K+
Sbjct: 11  CNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70

Query: 262 AQGESPLDCA 271
             G SPL  A
Sbjct: 71  DAGWSPLHIA 80

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 24/67 (35%), Positives = 32/67 (47%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A   G    V+ LL  GV  N  D  G S LH+AA     +I   L+  GA+++  N  G
Sbjct: 47  ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 107 CTPLHYA 113

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 21/70 (30%), Positives = 33/70 (47%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           +  A   G+   V  LL      N  D +G + LHLA    R + A  L+  GA++  +N
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202

Query: 262 AQGESPLDCA 271
            + ++PL  A
Sbjct: 203 KEEKTPLQVA 212

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 26/70 (37%), Positives = 36/70 (51%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    VK LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

Query: 262 AQGESPLDCA 271
               + +  A
Sbjct: 137 HYDATAMHRA 146

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 16/70 (22%), Positives = 28/70 (40%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A           LL  G + +  D    + +H AA      +  IL+   A+ + ++
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169

Query: 262 AQGESPLDCA 271
            +G +PL  A
Sbjct: 170 TEGNTPLHLA 179

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 4/41 (9%), Positives = 14/41 (34%)

Query: 231 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
            + + +LA      ++   ++   +     +    + L  A
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWA 47

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 63.6 bits (156), Expect = 4e-12
 Identities = 21/67 (31%), Positives = 32/67 (47%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A++N   + V+ LL  G + N     G S LH A+      +   L+ SGA+   KN   
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216

Query: 265 ESPLDCA 271
           ++PL  A
Sbjct: 217 DTPLMVA 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 59.8 bits (146), Expect = 8e-11
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 185 NGATDKPRMEYEVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAAL 240
           + A     +E   N +G   L  A+       V+ LL  G D +  D K G S L  A  
Sbjct: 101 SAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159

Query: 241 FNRTDIAFILMESGANMDCKNAQGESPLDCA 271
            N   +  +L++ GAN++ +   G S L  A
Sbjct: 160 NNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.5 bits (140), Expect = 6e-10
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA----NMDCK 260
           A+     + V+ L++ G      D+ G +  HLA           L++S A    +++ +
Sbjct: 53  AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112

Query: 261 NAQGESPLDCA 271
           N  G + L  A
Sbjct: 113 NYDGLTALHVA 123

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 56.7 bits (138), Expect = 9e-10
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 205 AIKNGDAAAVKKLLSE----GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           A+  G+  AV +L++     G + +  +    + LHLA +     +  +L+ +GA+    
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 261 NAQGESPLDCA 271
           +  G++    A
Sbjct: 76  DRHGQTAAHLA 86

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 256
           A   G    V+ L+  G D++  +    + L +A      DI        A+
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 45.5 bits (109), Expect = 7e-06
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 224 ANFCDKQGMSLLHLAALFNRTDIAFILME----SGANMDCKNAQGESPLDCA 271
           A   D+ G + LH+A +         L+      G  +D  N   ++PL  A
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 53

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 61.7 bits (151), Expect = 5e-12
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           + DA + G    +K L+  G D N  D  G   +HLA     T +   L  + +++  ++
Sbjct: 72  VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRD 130

Query: 262 AQGESPLDCA 271
           A+G +PL+ A
Sbjct: 131 ARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.0 bits (144), Expect = 5e-11
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 202 LRDAIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           L  A   GD   V++LL  E V  +  ++ G + L +   F  T IA  L++ GA+ + +
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQ 64

Query: 261 NAQGESPLDCA 271
           +  G SP+  A
Sbjct: 65  DTSGTSPVHDA 75

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 58.6 bits (143), Expect = 6e-11
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 208 NGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESP 267
            G  A   +LL +G   N  D  G S +H AA     D   +L+E GA+++  +  G  P
Sbjct: 45  FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP 104

Query: 268 LDCA 271
           +  A
Sbjct: 105 IHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.8 bits (149), Expect = 5e-12
 Identities = 28/70 (40%), Positives = 40/70 (57%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA+++ K+
Sbjct: 39  LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 98

Query: 262 AQGESPLDCA 271
             G +PL  A
Sbjct: 99  KNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 59.7 bits (146), Expect = 2e-11
 Identities = 27/67 (40%), Positives = 39/67 (58%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA+++ K+  G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 69  RTPLHLA 75

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.4 bits (109), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 255
           A +NG    VK LL  G D N  DK G + LHLAA     ++  +L+E+GA
Sbjct: 75  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 42.3 bits (101), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 231 GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           G + LHLAA     ++  +L+E+GA+++ K+  G +PL  A
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 62.1 bits (152), Expect = 5e-12
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 196 EVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 252
           +V  E       A +  D  A+ +LL E  D +  D+ G + L   A         +L E
Sbjct: 39  DVVSEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 97

Query: 253 SGANMDCKNAQ-GESPLDCA 271
           +GA++D ++ + G + L  A
Sbjct: 98  AGADLDHRDMRGGLTALHMA 117

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           L      G    V+ L   G D +  D + G++ LH+AA + R ++   L+E GA+++ +
Sbjct: 80  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 139

Query: 261 NAQGESPLDCA 271
           + +G + L+ A
Sbjct: 140 DERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 7/79 (8%)

Query: 196 EVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 252
              GEG        K+G + +         D      +  +    AA          L+E
Sbjct: 9   RTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE 65

Query: 253 SGANMDCKNAQGESPLDCA 271
              ++D  +  G + L   
Sbjct: 66  -DRDVDAVDENGRTALLFV 83

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNA 262
           A        V+ L+  G D    D++G++ L LA    +T      M+ G  +  +  
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 174

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 61.2 bits (150), Expect = 6e-12
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G A  V+ LL  G D N  D   M+ LH A   N  ++  +L++ GA++  ++
Sbjct: 71  LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS 130

Query: 262 AQGESPLDCA 271
              ++  D +
Sbjct: 131 KFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A + G  +  + LL  GV  +   K   + LH+AA     +I  +L++ GA+++ K+   
Sbjct: 41  AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK 100

Query: 265 ESPLDCA 271
            + L  A
Sbjct: 101 MTALHWA 107

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 56.2 bits (137), Expect = 5e-10
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L +A + G    V+ L++ G      D  G S LHLAA +       +L+ +G + D + 
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 262 AQGESPLDCA 271
               +PL  A
Sbjct: 65  KVDRTPLHMA 74

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 41.6 bits (99), Expect = 5e-05
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 250
           L  A ++     V+ L+  G D +   K   +   ++      D+A IL
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 61.6 bits (151), Expect = 7e-12
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 197 VNGEG---LRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFILME 252
            N E    L +A K GD   VKKL +   V+    + +  + LH AA +NR  +   L++
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 253 SGANMDCKNAQGESPLDCA 271
            GA++  K+  G  PL  A
Sbjct: 64  HGADVHAKDKGGLVPLHNA 82

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 61.3 bits (150), Expect = 9e-12
 Identities = 21/70 (30%), Positives = 32/70 (45%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L +A   G     + L+  G   N  D    + LH AA   + +I  +L++ GA+   KN
Sbjct: 79  LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138

Query: 262 AQGESPLDCA 271
             G +PLD  
Sbjct: 139 RDGNTPLDLV 148

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 57.8 bits (141), Expect = 1e-10
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 196 EVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 252
           ++ G     L  A      + V+ LL  G D +  DK G+  LH A  +   ++A +L++
Sbjct: 37  DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96

Query: 253 SGANMDCKNAQGESPLDCA 271
            GA ++  +    +PL  A
Sbjct: 97  HGAVVNVADLWKFTPLHEA 115

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 255
           A   G     K LL  G D    ++ G + L L      TDI  +L    A
Sbjct: 115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 63.0 bits (154), Expect = 7e-12
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 196 EVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 252
           +V  E       A +  D  A+ +LL E  D +  D+ G + L   A         +L E
Sbjct: 40  DVVSEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98

Query: 253 SGANMDCKNAQ-GESPLDCA 271
           +GA++D ++ + G + L  A
Sbjct: 99  AGADLDHRDMRGGLTALHMA 118

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           L      G    V+ L   G D +  D + G++ LH+AA + R ++   L+E GA+++ +
Sbjct: 81  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 140

Query: 261 NAQGESPLDCA 271
           + +G + L+ A
Sbjct: 141 DERGLTALELA 151

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           A        V+ L+  G D    D++G++ L LA    +T      M+ G  +  + 
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 174

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 198 NGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESG 254
            GEG        K+G + +         D      +  +    AA          L+E  
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALSQLLE-D 67

Query: 255 ANMDCKNAQGESPLDCA 271
            ++D  +  G + L   
Sbjct: 68  RDVDAVDENGRTALLFV 84

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%)

Query: 213 AVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
                 +E  +      +G  + +L    +  D  ++     A    K+   E  L+ A
Sbjct: 181 GQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYA 237

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 8/87 (9%), Positives = 22/87 (25%), Gaps = 2/87 (2%)

Query: 185 NGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT 244
           NG T     +  V  + +  A        ++ L  +  +       G             
Sbjct: 279 NGTT--VLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAP 336

Query: 245 DIAFILMESGANMDCKNAQGESPLDCA 271
            +  + +   A +  ++         +
Sbjct: 337 AVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 202 LRDAIKNGDAAAVKKLL-----SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 256
           L  A++  +  A+  ++        +  ++ +KQG S LH A L N  D+A   +E G +
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236

Query: 257 MDCKNAQGESPLDCA 271
           ++ ++ +   PL  +
Sbjct: 237 VNMEDNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 13/80 (16%)

Query: 205 AIKNGDAAAVKKLLSE-------------GVDANFCDKQGMSLLHLAALFNRTDIAFILM 251
           +++       K+LL +             G          +  +  AA  ++ ++  +L 
Sbjct: 251 SVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310

Query: 252 ESGANMDCKNAQGESPLDCA 271
           E    +      G       
Sbjct: 311 EKLDEVVRSLNTGAGGAVKR 330

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 5e-10
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A + G    V++L+  GV     ++ G + LHLA  F   D A  L   G      +  G
Sbjct: 27  AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH--G 84

Query: 265 ESPLDCA 271
           + P+  A
Sbjct: 85  QKPIHLA 91

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 205 AIKNGDA--AAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-----GANM 257
            +  G      +K L+  G      DK   + L  A  F   +   ++M++        +
Sbjct: 145 CVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL 204

Query: 258 DCKNAQGESPLDCA 271
           D  N QG S L  A
Sbjct: 205 DYANKQGNSHLHWA 218

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 220 EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
             ++    D + M  +H+AA   +TD    L+E+G +   +N  G + L  A
Sbjct: 9   PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 9/62 (14%), Positives = 20/62 (32%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           AI         + +  G+D N  D +    L+L+       +   L++       +    
Sbjct: 218 AILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPY 277

Query: 265 ES 266
            +
Sbjct: 278 HN 279

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.9 bits (128), Expect = 3e-08
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 23/93 (24%)

Query: 202 LRDAIKNGDAAAVKKLLSEG---------------------VDANFCDKQGMSLLHLAAL 240
           +  A+       V  L+                        + ++    +G + LH    
Sbjct: 88  IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVG 147

Query: 241 F--NRTDIAFILMESGANMDCKNAQGESPLDCA 271
                 ++  IL++ GA+   K+   E+PL  A
Sbjct: 148 LGPEYLEMIKILVQLGASPTAKDKADETPLMRA 180

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.9 bits (128), Expect = 4e-08
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A K G     K L S G   +     G   +HLA + N+TD+   L+E         
Sbjct: 57  LHLACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKE----- 109

Query: 262 AQGESPLDCAPVTLQYKMRQKMEEDKNNVGST 293
            +G+ P        + ++ +     K+  G T
Sbjct: 110 -RGQMPESLLNECDEREVNEIGSHVKHCKGQT 140

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 60.8 bits (149), Expect = 1e-11
 Identities = 24/70 (34%), Positives = 41/70 (58%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           LR A   G    V+ LL  G D N  D +G + LHLAA+F   +I  +L+++GA+++ ++
Sbjct: 84  LRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143

Query: 262 AQGESPLDCA 271
             G++  D +
Sbjct: 144 KFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 58.9 bits (144), Expect = 6e-11
 Identities = 23/70 (32%), Positives = 39/70 (55%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L +A + G    V+ L++ G D N  D  G + LHLAA     +I  +L+++GA+++  +
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77

Query: 262 AQGESPLDCA 271
             G +PL  A
Sbjct: 78  HAGMTPLRLA 87

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 27/70 (38%), Positives = 40/70 (57%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A  NG    V+ LL  G D N  D  GM+ L LAALF   +I  +L+++GA+++  +
Sbjct: 51  LHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110

Query: 262 AQGESPLDCA 271
            +G +PL  A
Sbjct: 111 MEGHTPLHLA 120

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.4 bits (96), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 252
           L  A   G    V+ LL  G D N  DK G +   ++      D+A IL +
Sbjct: 117 LHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 26/181 (14%), Positives = 58/181 (32%), Gaps = 15/181 (8%)

Query: 127 EAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARSRGST--SNSNFSSIFN-PGQV 183
             P    + +       SS     ++ P P   +N  + +         F  I   P  +
Sbjct: 24  AGPIITFTHDL-TSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSL 82

Query: 184 TNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFN 242
            N ++++       N +    +  +          +  ++ N   D+ G + LH      
Sbjct: 83  NNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA 142

Query: 243 RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE----------DKNNVGS 292
             ++   L++ G+N    +  GES L  A  ++        E            ++++  
Sbjct: 143 NLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNR 202

Query: 293 T 293
           T
Sbjct: 203 T 203

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 15/67 (22%), Positives = 24/67 (35%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
             K+     +          N  D  G + L++AA      I   L++ GA+    N  G
Sbjct: 257 ERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG 316

Query: 265 ESPLDCA 271
             P+D  
Sbjct: 317 LRPVDFG 323

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 3/79 (3%)

Query: 196 EVNGEG---LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 252
            +  +    L +A + G    V+ L++ G D    DK G + LHLAA     ++  +L+E
Sbjct: 19  HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE 78

Query: 253 SGANMDCKNAQGESPLDCA 271
           +GA++  ++  G++  D +
Sbjct: 79  AGADVXAQDKFGKTAFDIS 97

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
              +        L+  G             L  AA   + D   ILM +GA++  K+  G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 58  STPLHLA 64

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434

 Score = 63.1 bits (153), Expect = 2e-11
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 8   FQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 67
                 C  C C F+   RRHHC  CG+ +C   S ++  L         +VC  CF   
Sbjct: 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLK-DRMAKVCDGCFGEL 430

Query: 68  SRTG 71
            + G
Sbjct: 431 KKRG 434

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           AI + +   V  LL+ G   N  +      LH AA    T I  IL+ SG +    + +G
Sbjct: 38  AIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95

Query: 265 ESPLDCA 271
            + L  A
Sbjct: 96  NTALYYA 102

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A    D   VK LL  G+D +  D +G + L+ A          + ++    +      G
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128

Query: 265 -ESPLDCA 271
            ++    A
Sbjct: 129 WKTSFYHA 136

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A+   D + V   LSE     F     +S +H+       D+  +L++   + +  N+  
Sbjct: 136 AVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL 194

Query: 265 ESPL 268
             P 
Sbjct: 195 FIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
            I    +  +K  LS   D    D  G S  + A   N   +   L+ +GA  +      
Sbjct: 6   RINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--N 62

Query: 265 ESPLDCA 271
           E PL  A
Sbjct: 63  EFPLHQA 69

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQG-MSLLHLAALFNRTDIAFILMESGANMDCKNAQ 263
           A+ +G+   VK  + +     F  K G  +  + A + N   I    +    +     A 
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS-TFDLAI 160

Query: 264 GESPLDCA 271
             S +   
Sbjct: 161 LLSCIHIT 168

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.1 bits (118), Expect = 5e-07
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMS-LLHLAALFNRTDIAFILMESGANMDCKN 261
            IKNG    +  LL      N  +       + LA      ++   L +   N+   N
Sbjct: 168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN 225

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 7/67 (10%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           ++ AI N D   ++ L    ++         S      L +  +IA +++E        +
Sbjct: 199 IKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDS 251

Query: 262 AQGESPL 268
              +  +
Sbjct: 252 YTKDLDI 258

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 59.4 bits (145), Expect = 3e-11
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 208 NGDAAAVKKLLSEGVDANFCDKQGMSL-LHLAALFNRTDIAFILMESGANMDCKNAQGES 266
            G A   + LL  G + N  D   ++  +H AA     D   +L  +GA +D ++A G  
Sbjct: 54  MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRL 113

Query: 267 PLDCA 271
           P+D A
Sbjct: 114 PVDLA 118

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 55.9 bits (136), Expect = 6e-10
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    V+ LL  G + N  +  G   + +        +A +L+  GA  +C +
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD 74

Query: 262 AQGE-SPLDCA 271
                 P+  A
Sbjct: 75  PATLTRPVHDA 85

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 55.6 bits (135), Expect = 8e-10
 Identities = 13/68 (19%), Positives = 21/68 (30%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           + DA + G    +  L   G   +  D  G   + LA      D+A  L  +       N
Sbjct: 82  VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN 141

Query: 262 AQGESPLD 269
                  +
Sbjct: 142 HARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 50.6 bits (122), Expect = 4e-08
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 218 LSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           +     ++   +     L  AA   R +    L+E+GAN +  N+ G  P+   
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM 52

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.1 bits (147), Expect = 3e-11
 Identities = 18/70 (25%), Positives = 35/70 (50%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  +I  G +     LL  G + N  + +G + L +A+ + R++I   L+E GA++  ++
Sbjct: 105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARD 164

Query: 262 AQGESPLDCA 271
             G +    A
Sbjct: 165 LTGLTAEASA 174

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.1 bits (147), Expect = 3e-11
 Identities = 24/67 (35%), Positives = 42/67 (62%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A+KN      +KLLS+G + N  D  G + L  + +F  +++++ L+E GAN++ +N +G
Sbjct: 75  AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134

Query: 265 ESPLDCA 271
           E+PL  A
Sbjct: 135 ETPLIVA 141

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 20/67 (29%), Positives = 32/67 (47%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A   G   A+ KL+         D +G + L  A   NR  IA  L+  G+N++ K+  G
Sbjct: 42  ACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101

Query: 265 ESPLDCA 271
           ++PL  +
Sbjct: 102 KTPLMWS 108

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 55.5 bits (135), Expect = 2e-09
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 207 KNGDAA---AVKKLLSEGVDA--NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           KNG+       +K +++ +D   N+ D    + L +A +    +    L+E+   ++ K+
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD 65

Query: 262 AQGESPLDCA 271
            +G + L  A
Sbjct: 66  IEGSTALIWA 75

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 250
           L  A K G +  VKKLL  G D +  D  G++    A +F R ++  I 
Sbjct: 138 LIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 59.0 bits (144), Expect = 3e-11
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 208 NGDAAAVKKLLSEGVDANFCDKQGMSL-LHLAALFNRTDIAFILMESGANMDCKNAQGES 266
            G A   + LL  G + N  D   ++  +H AA     D   +L  +GA +D  +A G  
Sbjct: 54  MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRL 113

Query: 267 PLDCA 271
           P+D A
Sbjct: 114 PVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 54.8 bits (133), Expect = 9e-10
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    V++LL  G D N  ++ G   + +        +A +L+  GA  +C +
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCAD 74

Query: 262 AQGE-SPLDCA 271
                 P+  A
Sbjct: 75  PATLTRPVHDA 85

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.4 bits (127), Expect = 6e-09
 Identities = 10/51 (19%), Positives = 19/51 (37%)

Query: 221 GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
               +       + L  AA   + +    L+E+GA+ +  N  G  P+   
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM 52

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 49.7 bits (120), Expect = 7e-08
 Identities = 14/55 (25%), Positives = 21/55 (38%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 256
           + DA + G    +  L   G   + CD  G   + LA      DIA  L  +  +
Sbjct: 82  VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCK 260
           L  A++N D   V++LL  G + NF +++ G + LH A   +R DI  +L+  GA+   +
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 261 NAQGESPLDCA 271
              G +P   A
Sbjct: 69  KKNGATPFLLA 79

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.9 bits (149), Expect = 5e-11
 Identities = 15/67 (22%), Positives = 28/67 (41%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A++      V+ LL  G D     K G +   LAA+     +  + +  GA+++  +  G
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 265 ESPLDCA 271
            +    A
Sbjct: 106 FTAFMEA 112

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 57.9 bits (141), Expect = 6e-10
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
              A   G    +K  LS+G D N CD  G +    AA++ +      L + GAN++ + 
Sbjct: 76  FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135

Query: 262 ----------AQGESPLDCA 271
                       G + L  A
Sbjct: 136 KTKEDQERLRKGGATALMDA 155

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 202 LRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTD----IAFILMESGAN 256
           L DA + G    +K LL E G D N CD  G + L  A L +       I  +L++ GA+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 257 MDCKNAQGESPLDCA 271
           ++ +  +G++PL  A
Sbjct: 212 VNVRGERGKTPLILA 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDK----------QGMSLLHLAALFNRTDIA-FIL 250
             +A   G   A+K L   G + N   K           G + L  AA     ++   +L
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168

Query: 251 MESGANMDCKNAQGESPLDCA 271
            E GA+++  +  G + L  A
Sbjct: 169 DEMGADVNACDNMGRNALIHA 189

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 207 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGE 265
            +   A    LL  G D N   ++G + L LA       +   L+E     ++  ++ G+
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 266 SPLDCA 271
           + L  A
Sbjct: 255 TALLLA 260

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.8 bits (133), Expect = 7e-09
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 205 AIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           A++      V++LL  E ++ N  D  G + L LA       IA +L + GA+ DC +
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.5 bits (101), Expect = 8e-05
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 228 DKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ-GESPLDCA 271
             +   LL  A      D+   L+E GAN++ +  + G +PL  A
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA 46

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 58.9 bits (144), Expect = 4e-11
 Identities = 23/70 (32%), Positives = 38/70 (54%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A  +G    V+ LL  G D N  D  G + LHLAA     +IA +L++ GA+++ ++
Sbjct: 51  LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110

Query: 262 AQGESPLDCA 271
             G++  D +
Sbjct: 111 KFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.8 bits (141), Expect = 7e-11
 Identities = 21/67 (31%), Positives = 39/67 (58%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A + G    V+ L++ G D N  D+ G++ L+LA      +I  +L+++GA+++  +A G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80

Query: 265 ESPLDCA 271
            +PL  A
Sbjct: 81  FTPLHLA 87

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 41.2 bits (98), Expect = 5e-05
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 235 LHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           L  AA   + D   ILM +GA+++ K+  G +PL  A
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA 54

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME 252
           L  A   G     + LL  G D N  DK G +   ++      D+A IL +
Sbjct: 84  LHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 7/70 (10%)

Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA-------FILMESGANMDCKN 261
           G     K  L +G D     K    ++         D          I  +SG  +  K+
Sbjct: 92  GTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151

Query: 262 AQGESPLDCA 271
             G + L+  
Sbjct: 152 KWGLTALEFV 161

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.9 bits (143), Expect = 8e-11
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF------ILMESGA 255
           LR+            L+++G D     K+G +L          DI        I +E GA
Sbjct: 46  LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105

Query: 256 NMDCKNAQGESPLDCA 271
           ++       +  +   
Sbjct: 106 DITALYKPYKIVVFKN 121

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN-----RTDIAFILMESGAN 256
           +  A   G      +L  +G +    +    S +    L N     R  I+  L+  GA+
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67

Query: 257 MDCKNAQGESPLDCA 271
           +  +  +G +     
Sbjct: 68  IKSRTKEGTTLFFPL 82

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 53.5 bits (129), Expect = 7e-09
 Identities = 8/67 (11%), Positives = 18/67 (26%), Gaps = 7/67 (10%)

Query: 202 LRDAIKNGDAAAVKK-------LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESG 254
           +   I N      +            G+     DK G++ L       +     ++ +  
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

Query: 255 ANMDCKN 261
              + K 
Sbjct: 178 KKYNLKE 184

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 205 AIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 263
           A +  +   VK L+ E G + +  D+ G + + LAA   R ++   L++ GA+++  +A 
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT 345

Query: 264 GESPLDCA 271
             +    A
Sbjct: 346 DHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL---MESGANMDCKN 261
           A+       V  L+  G D    +K   S LH AA      +   +    +   +++  +
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 262 AQGESPLDCA 271
             G + L   
Sbjct: 233 RNGMTALMIV 242

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
            K+ ++ G D N  D    + L LA L  R  +   LM++GA+    N    S L  A
Sbjct: 149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA 206

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 12/79 (15%)

Query: 205 AIKNG---DAAAVKKLLSEGVDANFC--------DKQGMSLLHLAALFNRTDIA-FILME 252
              N      A+ K L+ +G   ++           +G + LH AA  +   I  +++ E
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 253 SGANMDCKNAQGESPLDCA 271
            G+N D ++  G++P+  A
Sbjct: 302 KGSNKDKQDEDGKTPIMLA 320

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 3/88 (3%)

Query: 185 NGATDKPRMEYEVNGE-GLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR 243
           +G   + R E +            NG+        +        + +    LH  A    
Sbjct: 47  DGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGS 105

Query: 244 TDIAFILMESGANMDCKNAQGESPLDCA 271
             I   +     N+        + L   
Sbjct: 106 YAITEPITRESVNIIDPR-HNRTVLHWI 132

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 11/54 (20%), Positives = 17/54 (31%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           A + G    V  L+ +G      D    +   LA   N  +I  I        +
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 208 NGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL--------MESGANMDC 259
            G  A  + +  E V+     +   ++LH  A  +  + +  L        + +GA+++ 
Sbjct: 103 AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161

Query: 260 KNAQGESPLDCA 271
            +    +PL  A
Sbjct: 162 MDCDENTPLMLA 173

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 202 LRDAIKNGDAAAVKKLLS---EGVDANFCDKQGMSLLHLAALFNRTD---IAFILMESGA 255
           L  A  N D   +  +L+      D    D+ GM+ L + A     D    A +L+E GA
Sbjct: 203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA 262

Query: 256 NMDC--------KNAQGESPLDCA 271
            +D         +  +G + L  A
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYA 286

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 8/89 (8%), Positives = 16/89 (17%), Gaps = 2/89 (2%)

Query: 185 NGATDKPRMEYEVNGEGLRDAIKNGDAA--AVKKLLSEGVDANFCDKQGMSLLHLAALFN 242
           N +   P ME E        +I +   +              N      +          
Sbjct: 13  NASVWMPPMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNG 72

Query: 243 RTDIAFILMESGANMDCKNAQGESPLDCA 271
              +      +         +    L   
Sbjct: 73  NDFLGDFNHTNLQIPTEPEPESPIKLHTE 101

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   GD   +  LL   V+ N  +  G + L +       +IA  L+  GAN D K+
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKD 67

Query: 262 AQGESPLDCA 271
             G + +  A
Sbjct: 68  RTGFAVIHDA 77

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 57.8 bits (141), Expect = 2e-10
 Identities = 18/65 (27%), Positives = 34/65 (52%)

Query: 207 KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES 266
           K G+    ++LL  G + +  D+ G +++H AA     D    L+E  A+++ ++ +G  
Sbjct: 46  KLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL 105

Query: 267 PLDCA 271
           PL  A
Sbjct: 106 PLHLA 110

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 56.6 bits (138), Expect = 4e-10
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA-NMDCK 260
           + DA + G    ++ LL    D N  D +G   LHLAA      +   L++  A N+  +
Sbjct: 74  IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHR 133

Query: 261 NAQGESPLDCA 271
           N +G++  D A
Sbjct: 134 NHKGDTACDLA 144

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 255
           L  A K G    V+ L+     +    + +G +   LA L+ R ++  ++  +GA
Sbjct: 107 LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 58.6 bits (143), Expect = 2e-10
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 205 AIKNGDAAAVKKLLS--EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNA 262
           A   G+   VK L       D N    QG++ LHLA      +++  L+E+GA++  K+ 
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

Query: 263 QGESPLDCA 271
             + PL  A
Sbjct: 139 FNQIPLHRA 147

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 202 LRDAIKNGDAAAVKKLLSEGV-DANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDC 259
           L  A   G    ++ L   G    N+ DKQG + L  A      D A +L+E  GA  D 
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203

Query: 260 KNAQGESPLDCA 271
            + +G    D A
Sbjct: 204 VDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.5 bits (135), Expect = 2e-09
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 205 AIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM---DCK 260
           A    +   V++LL S+       D+ G   LH +  F   +I   L+    N+   D  
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68

Query: 261 NAQGESPLDCA 271
           +  G +P   A
Sbjct: 69  DDSGWTPFHIA 79

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.1 bits (134), Expect = 3e-09
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN-MDCKNAQ 263
           A+        + L+  G      DK     LH AA      +  +L   G + ++ ++ Q
Sbjct: 114 AVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173

Query: 264 GESPLDCA 271
           G +PL  A
Sbjct: 174 GWTPLFHA 181

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 54.4 bits (132), Expect = 6e-09
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 205 AIKNGDAAAVKKLLSEGVDAN---FCDKQGMSLLHLAALFNRTDIAFILME--SGANMDC 259
           ++          LLS+  + N   + D  G +  H+A      ++   L +     +++ 
Sbjct: 43  SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102

Query: 260 KNAQGESPLDCA 271
              QG + L  A
Sbjct: 103 ITNQGVTCLHLA 114

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 58.3 bits (142), Expect = 2e-10
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCKNAQ 263
           A  +G    V+ L+S G D N  +   G + LHLA      D+  +L++ GA+++    Q
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 264 GESPLDCA 271
           G SP    
Sbjct: 184 GYSPYQLT 191

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 205 AIKNGDAAA----VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           AI + + A     ++++  +    NF +    + LHLA + N+ +IA  L+ +G + + +
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74

Query: 261 NAQGESPLDCA 271
           + +G +PL  A
Sbjct: 75  DFRGNTPLHLA 85

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.6 bits (140), Expect = 5e-10
 Identities = 15/67 (22%), Positives = 19/67 (28%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQG 264
           A+   +   V  LL  G D N    QG S   L      T I   L +          + 
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217

Query: 265 ESPLDCA 271
           E      
Sbjct: 218 EDEESYD 224

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)

Query: 205 AIKNGDAAAVKKLLSEGVDA------NFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           A + G  A+V  L                +  G + LHLA++     I  +L+  GA+++
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144

Query: 259 CK-NAQGESPLDCA 271
            +    G + L  A
Sbjct: 145 AQEPCNGRTALHLA 158

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN------MD 258
           A+        + LL  G D    D +G + LHLA          +L +S         + 
Sbjct: 52  AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111

Query: 259 CKNAQGESPLDCA 271
             N  G + L  A
Sbjct: 112 ATNYNGHTCLHLA 124

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 228 DKQGMSLLHLAALFNRTDIAF----ILMESGANMDCKNAQGESPLDCA 271
            + G S LHLA +     +       +    A ++ +N   ++PL  A
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLA 52

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 58.0 bits (141), Expect = 4e-10
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)

Query: 205 AIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN-----MD 258
           A K  D  A+ KLL  EG + +     G + LH+AAL++  + A +LME+        M 
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69

Query: 259 CKNAQGESPLDCA 271
            +  +G++ L  A
Sbjct: 70  SELYEGQTALHIA 82

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 13/83 (15%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDK-------------QGMSLLHLAALFNRTDIAF 248
           L  A+ N +   V+ LL+ G   +                  G   L  AA     +I  
Sbjct: 79  LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR 138

Query: 249 ILMESGANMDCKNAQGESPLDCA 271
           +L+E GA++  +++ G + L   
Sbjct: 139 LLIEHGADIRAQDSLGNTVLHIL 161

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 10/80 (12%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF----ILMESGANM 257
           L  A   G    V+ L+  G D    D  G ++LH+  L      A     +L+      
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184

Query: 258 DCK------NAQGESPLDCA 271
             K      N QG +P   A
Sbjct: 185 HLKSLELVPNNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 18/85 (21%)

Query: 205 AIKNGDAAAVKKLLSEGVD-----ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDC 259
           A    +  A   L+    +           +G + LH+A +    ++   L+  GA++  
Sbjct: 44  AALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA 103

Query: 260 KN-------------AQGESPLDCA 271
           +                GE PL  A
Sbjct: 104 RATGSVFHYRPHNLIYYGEHPLSFA 128

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 57.1 bits (137), Expect = 2e-09
 Identities = 33/166 (19%), Positives = 54/166 (32%), Gaps = 5/166 (3%)

Query: 106 VKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKKTENTARS 165
           + + P         G P      P        RP      S     S             
Sbjct: 148 LTKLPEIRGRRGGRGRPR---GQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLF 204

Query: 166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDAN 225
           R S    +  ++ +     +GA        + N   L  A       A + LL  G + N
Sbjct: 205 RASGHPPSLPTMADALA--HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262

Query: 226 FCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
             D  G   LH A +   T +A + ++ GA++  ++++G  PL  A
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 217 LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           ++  G   +     G + LH AAL+N+ D   +L++  A +   N  GE+ LD A
Sbjct: 212 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.6 bits (131), Expect = 7e-09
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 3/73 (4%)

Query: 202 LRDAIKNGDAAAVK---KLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           L  A+++ D  ++     L+    + +    +G + LH   L +  +   +L+   A+++
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232

Query: 259 CKNAQGESPLDCA 271
             N  GE+PLD A
Sbjct: 233 IANESGETPLDIA 245

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120

 Score = 52.1 bits (124), Expect = 7e-09
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 13/116 (11%)

Query: 2   SIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCA 61
           S  P        C  C   F    R+  C  C +  C   SS     P        R+C 
Sbjct: 10  SSFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGP--------RLCL 61

Query: 62  DCFNSSSRTGKDNLQVSSDGVNSVTDTFSRLDIDSD----KDPKVESVVKRHPVSS 113
            C    +   +   ++    V  + D  S  DI ++    K+  V  V+ + PV S
Sbjct: 62  LCQRFRATAFQRE-ELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQPVIS 116

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 10/63 (15%), Positives = 23/63 (36%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L   + +G      +L          + QG++ L LAA   + +I   +++   +    +
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAH 251

Query: 262 AQG 264
              
Sbjct: 252 HHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 16/83 (19%)

Query: 205 AIKNGDAAAVKKLLSEGVDAN-------------FCDKQGMSLLHLAALFNRTDIAFILM 251
           AI+      VK L+  G D +              C   G   L LAA   + D+   L+
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 252 ESG---ANMDCKNAQGESPLDCA 271
           E+    A+++  ++ G + L   
Sbjct: 157 ENPHQPASLEATDSLGNTVLHAL 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 207 KNGDAAAVKKLLSEGVDANFC-----------DKQGMSLLHLAALFNRTDIAFILMESGA 255
           ++G  A +  LL    D+                QG S LH+A          +L+E+GA
Sbjct: 55  QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114

Query: 256 NMDCKNAQGESPLDCAPVT 274
           ++  +              
Sbjct: 115 DVHLRACGRFFQKHQGTCF 133

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.5 bits (108), Expect = 6e-06
 Identities = 19/108 (17%), Positives = 27/108 (25%), Gaps = 20/108 (18%)

Query: 184 TNGATDKPRMEYEVNGEG-LRDAIKNGDAAAVKKLLSEGV---DANFCDKQGMSLLHLAA 239
                 K +      GE  L  A        V  LL            D  G ++LH   
Sbjct: 121 CGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALV 180

Query: 240 LFNRT----------------DIAFILMESGANMDCKNAQGESPLDCA 271
           +                     +   L  +    +  N QG +PL  A
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 16/96 (16%), Positives = 24/96 (25%), Gaps = 22/96 (22%)

Query: 198 NGEGLRDAIKNGDAAAVKKLLSE--------GVDANFCDKQGMSLLHLAALF---NRTDI 246
           + + L   +  G    +  LL             A      G + L  A L         
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 247 AFILMESG-----------ANMDCKNAQGESPLDCA 271
              L++             A    +  QG S L  A
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIA 97

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 17/84 (20%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSL--------------LHLAALFNRTDIAFIL 250
           AI+  +   V  L+  G D                         L LAA  N+  I   L
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 251 MESG---ANMDCKNAQGESPLDCA 271
           +++    A++  +++ G + L   
Sbjct: 168 LQNSWQPADISARDSVGNTVLHAL 191

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 7/70 (10%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
              ++ N       KL          +++G++ L LAA   +  +   +++   +     
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH----- 258

Query: 262 AQGESPLDCA 271
                    A
Sbjct: 259 --EPECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 206 IKNGDAAAVKKLLSEG---------VDANFCDK--QGMSLLHLAALFNRTDIAFILMESG 254
           + NG    +  LL            V+A++ D   +G + LH+A       +  +L+E+G
Sbjct: 65  LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG 124

Query: 255 ANMDCKN 261
           A++    
Sbjct: 125 ADVQAAA 131

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 19/89 (21%)

Query: 202 LRDAIKNGDAAAVKKLLSEG---VDANFCDKQGMSLLHLAALFNRTDIAFI--------- 249
           L  A      A VK LL       D +  D  G ++LH         +            
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

Query: 250 -------LMESGANMDCKNAQGESPLDCA 271
                  L  +    +  N +G +PL  A
Sbjct: 212 ILILGAKLHPTLKLEEITNRKGLTPLALA 240

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 52.2 bits (125), Expect = 8e-08
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPL 268
                V  ++  G   +     G + LH AAL+N+ D   +L++  A +   N  GE+ L
Sbjct: 185 ASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 244

Query: 269 DCA 271
           D A
Sbjct: 245 DIA 247

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 21/111 (18%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDAN------FCDKQGMSLLHLAALF-NRTDIAFI--LME 252
           L  AI N D  +V +  + G D                +LHLA    N+  +  +  +++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 253 SGANMDCKNAQGESPL---------DCAPVTLQYKMRQKMEEDKNNVGSTT 294
           +G ++D K A G + L         DC  + L+ +         N  G T 
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT---VNEAGETA 243

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 17/84 (20%)

Query: 205 AIKNGDAAAVKKLLSEGVDAN--------------FCDKQGMSLLHLAALFNRTDIAFIL 250
           AI+      V+ L+ +G D +                   G   L LAA  N+  I   L
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 251 MESG---ANMDCKNAQGESPLDCA 271
            E+G   A++  ++++G + L   
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHAL 183

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 206 IKNGDAAAVKKLLS---------EGVDANFCDK--QGMSLLHLAALFNRTDIAFILMESG 254
           +  G    +  LL          E +++ F D   +G + LH+A          +L+E G
Sbjct: 57  LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116

Query: 255 ANMDCKN 261
           A++  + 
Sbjct: 117 ADVHAQA 123

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 8/60 (13%), Positives = 15/60 (25%), Gaps = 7/60 (11%)

Query: 204 DAIKNGDAAAVKKLLSEGVDAN-------FCDKQGMSLLHLAALFNRTDIAFILMESGAN 256
                        LL +              +  G+S L +AA   +  I   ++     
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 19/86 (22%)

Query: 205 AIKNGDAAAVKKLLSEG---VDANFCDKQGMSLLHLAALFN---------RTDIAFILME 252
           A        V  L   G    D    D +G ++LH                T +  +L+ 
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI 206

Query: 253 SGANMDCK-------NAQGESPLDCA 271
             A +          N  G SPL  A
Sbjct: 207 KCAKLFPDTNLEALLNNDGLSPLMMA 232

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 2   SIEPPAFQEATRCDVCKCSFN-TFRRRHHCRCCGRTLC 38
             +  +F+E T C  C+     TF + + C  C     
Sbjct: 348 DFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAH 385

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.2 bits (117), Expect = 7e-07
 Identities = 11/72 (15%), Positives = 17/72 (23%), Gaps = 5/72 (6%)

Query: 205 AIKNGDA---AAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           A   G +     +  LL+          +      LAA      +   L E         
Sbjct: 99  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 158

Query: 262 --AQGESPLDCA 271
             A+       A
Sbjct: 159 IQAENYHAFRLA 170

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.1 bits (109), Expect = 6e-06
 Identities = 13/74 (17%), Positives = 18/74 (24%), Gaps = 4/74 (5%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQ--GMSLLHLAALFNRTDIAFILMESGANMDC 259
            R A +NG    + +L            Q        LAA      +   L E       
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191

Query: 260 KN--AQGESPLDCA 271
               A+       A
Sbjct: 192 AMIQAENYYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 9/89 (10%)

Query: 185 NGATDKPRMEYEVNGE-GLRDAIKNGDAA---AVKKLLS-----EGVDANFCDKQGMSLL 235
           +G  D       + G   LR+ I+  D      ++ LLS                   LL
Sbjct: 264 DGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELL 323

Query: 236 HLAALFNRTDIAFILMESGANMDCKNAQG 264
            LA          +L+   + +    A  
Sbjct: 324 RLALRLGNQGACALLLSIPSVLALTKANN 352

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587

 Score = 40.4 bits (94), Expect = 5e-04
 Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 4/46 (8%)

Query: 1   MSIEPPAFQEATRCDVCKCSFNTF----RRRHHCRCCGRTLCHEHS 42
              +  +F+E T C  C+           R H CR      C    
Sbjct: 519 HDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRV 564

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.9
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.9
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.9
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.89
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.89
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.89
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	99.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.89
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.88
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.88
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.88
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.88
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.88
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.87
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.87
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.87
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.87
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.87
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.87
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	99.87
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.87
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.86
2rfa_A	232	Transient receptor potential cation channel subfa	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.86
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.86
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.86
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.85
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.85
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.85
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.85
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.85
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.85
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.85
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.85
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	99.85
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.85
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.85
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.85
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.85
2etb_A	256	Transient receptor potential cation channel subfam	99.85
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.84
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
2rfa_A	232	Transient receptor potential cation channel subfa	99.84
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.84
2pnn_A	273	Transient receptor potential cation channel subfa	99.84
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.84
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.84
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.84
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.84
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.84
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.84
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.83
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.83
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.83
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.83
2etb_A	256	Transient receptor potential cation channel subfam	99.83
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.83
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	99.83
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.83
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.83
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.83
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.83
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.83
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	99.83
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.82
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.82
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.81
2pnn_A	273	Transient receptor potential cation channel subfa	99.81
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.81
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.81
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.8
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.79
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.79
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.78
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.78
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.77
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	99.76
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	99.75
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.69
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.67
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.66
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.64
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	99.6
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.58
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.57
1zbd_B	134	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.92
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	96.64
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	96.28
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	96.21
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	95.88
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	95.52
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	95.51
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	95.33
2csz_A	76	Synaptotagmin-like protein 4; exophilin 2, granuph	95.24
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	92.72
1z60_A	59	TFIIH basal transcription factor complex P44 subun	92.68
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	91.92
2a20_A	62	Regulating synaptic membrane exocytosis protein 2;	91.27
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	90.88
2ect_A	78	Ring finger protein 126; metal binding protein, st	87.54
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	86.43
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	85.8
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	85.57
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	85.43
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	85.42
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	84.68
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	84.51
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	84.09
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	83.83
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	83.8
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	83.76
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	81.54
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	81.24
2ct7_A	86	Ring finger protein 31; IBR, structural genomics,	80.91
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	80.5
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	80.47

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=1.5e-26  Score=188.41  Aligned_cols=95  Identities=27%  Similarity=0.391  Sum_probs=69.1

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcH
Q 022481          198 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY  277 (296)
Q Consensus       198 ~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~  277 (296)
                      |.||||+|+..|+.++|++||++|+++|.+|..|+||||+|+..|+.+++++||++|++++.+|.+|+||||+|+..|+.
T Consensus        70 g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~  149 (169)
T 4gpm_A           70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE  149 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence            34477777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCCCCC
Q 022481          278 KMRQKMEEDKNNVGS  292 (296)
Q Consensus       278 ~iv~~Ll~~gadi~~  292 (296)
                      +++++|+++||+++.
T Consensus       150 ~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          150 EVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHHHTC------
T ss_pred             HHHHHHHHCCCCcCC
Confidence            777777777777764

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=1e-26  Score=189.35  Aligned_cols=125  Identities=24%  Similarity=0.374  Sum_probs=118.6

Q ss_pred             CCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481          164 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  243 (296)
Q Consensus       164 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~  243 (296)
                      .++..+..++++.|++.|+++|..+..+.+       |||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus        10 ~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t-------~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A           10 EAAENGNKDRVKDLIENGADVNASDSDGRT-------PLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCC
Confidence            345567788899999999999999888777       9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      .+++++||++|+++|.+|.+|+||||+|+..|+.++|++|+++|++++.+|+
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~  134 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS  134 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            9999999999999999999999999999999999999999999999998875

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.92  E-value=7.8e-25  Score=159.92  Aligned_cols=92  Identities=32%  Similarity=0.425  Sum_probs=89.3

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcH
Q 022481          198 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY  277 (296)
Q Consensus       198 ~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~  277 (296)
                      |.||||+|+..|+.+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 022481          278 KMRQKMEEDKNN  289 (296)
Q Consensus       278 ~iv~~Ll~~gad  289 (296)
                      +++++|+++||+
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            999999999986

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=5.1e-25  Score=178.50  Aligned_cols=130  Identities=23%  Similarity=0.361  Sum_probs=120.6

Q ss_pred             CccccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 022481          159 TENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLA  238 (296)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A  238 (296)
                      ......++..+...++++|++.|.+++..+..+.+       +||+|+..|+.+++++|+++|++++..|..|+||||+|
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   87 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWT-------PLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLA   87 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            34455666678888999999999999988877766       99999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          239 ALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       239 ~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  144 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK  144 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            999999999999999999999999999999999999999999999999999998864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=2.5e-23  Score=159.66  Aligned_cols=99  Identities=22%  Similarity=0.228  Sum_probs=95.0

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      .+.|+||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~   85 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   85 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCC
Q 022481          277 YKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       277 ~~iv~~Ll~~gadi~~~n~  295 (296)
                      .+++++|+++|++++.+|.
T Consensus        86 ~~~v~~Ll~~ga~~~~~~~  104 (123)
T 3aaa_C           86 VSCVKLLLSKGADKTVKGP  104 (123)
T ss_dssp             HHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHcCCCCCCcCC
Confidence            9999999999999998874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.90  E-value=1.6e-24  Score=173.38  Aligned_cols=126  Identities=19%  Similarity=0.251  Sum_probs=109.2

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc-HHHHHHH
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMS-LLHLAAL  240 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~T-pLh~A~~  240 (296)
                      ...+...+...++++|++.|.+++..+..+.+       |||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+.
T Consensus        16 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B           16 LATAAARGRVEEVRALLEAGANPNAPNSYGRR-------PIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCC-------TTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHH
Confidence            33444556778899999999999998877776       999985 99999999999999999999999999 9999999


Q ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          241 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       241 ~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~  142 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH  142 (156)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------
T ss_pred             CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCc
Confidence            9999999999999999999999999999999999999999999999999998764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=1.5e-23  Score=163.82  Aligned_cols=120  Identities=21%  Similarity=0.304  Sum_probs=104.7

Q ss_pred             cccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q 022481          161 NTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAAL  240 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~  240 (296)
                      ....++..+...+++.|++.|.+++..+..+.+       +||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        17 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           17 KLLEAARAGQDDEVRILMANGADVNAKDEYGLT-------PLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            344455567778888999999988888776666       9999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcC
Q 022481          241 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  287 (296)
Q Consensus       241 ~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  287 (296)
                      .|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus        90 ~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           90 IGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             cCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999876

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.5e-23  Score=182.99  Aligned_cols=127  Identities=17%  Similarity=0.164  Sum_probs=117.2

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      +.-++..+...++++|+..|++++..+..+.+       |||+|+..++.+++++|++.|+++|.+|..|+||||+|+..
T Consensus        90 Lh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t-------~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           90 LHVAALHGRADLIPLLLKHGANAGARNADQAV-------PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             HHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHcCcHHHHHHHHhcCCCcCccCCCCCC-------ccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC
Confidence            34445567788899999999999888877766       99999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |+.+++++||++|+++|.+|..|+||||+|+..|+.++|++||++|||++++|+
T Consensus       163 g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~  216 (269)
T 4b93_B          163 GHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK  216 (269)
T ss_dssp             TCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             CCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            999999999999999999999999999999999999999999999999999875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.90  E-value=2.2e-24  Score=168.61  Aligned_cols=120  Identities=20%  Similarity=0.223  Sum_probs=105.1

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCcHHHHHHH
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAAL  240 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~-g~TpLh~A~~  240 (296)
                      ...+...+...++++|++.|++++..+..+.+       |||+|+. |+.+++++|+++|++++.+|.. |+||||+|+.
T Consensus        16 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~   87 (136)
T 1d9s_A           16 LATAAARGQVETVRQLLEAGADPNALNRFGRR-------PIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAR   87 (136)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCT-------TTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCC-------HHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHH
Confidence            33444556777888899999888888776665       9999999 9999999999999999999998 8999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          241 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       241 ~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      .|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|||
T Consensus        88 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999886

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=4.4e-23  Score=161.15  Aligned_cols=98  Identities=22%  Similarity=0.231  Sum_probs=93.3

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcH
Q 022481          198 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY  277 (296)
Q Consensus       198 ~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~  277 (296)
                      |.|+||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        10 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   89 (137)
T 3c5r_A           10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHV   89 (137)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCH
Confidence            44599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCC
Q 022481          278 KMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       278 ~iv~~Ll~~gadi~~~n~  295 (296)
                      +++++|+++|++++.+|.
T Consensus        90 ~~v~~Ll~~ga~~~~~~~  107 (137)
T 3c5r_A           90 DIVKLLLSYGASRNAVNI  107 (137)
T ss_dssp             HHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHcCCCCCCCCC
Confidence            999999999999998874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.90  E-value=1.3e-23  Score=179.91  Aligned_cols=126  Identities=20%  Similarity=0.231  Sum_probs=90.7

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      ...+...+....++.|++.|++++.. .       .+.|+||+|+..|+.++|++||+.|+++|.+|..|+||||+|+..
T Consensus         9 L~~a~~~~~~~~~~~ll~~g~~~~~~-~-------~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            9 LPPGKRTNLRKTGSERIAHGMRVKFN-P-------LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CchhhhhhhHHHHHHHhccCCCcccC-c-------hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            34445556677888999999888743 2       345699999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |+.+++++||++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  134 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY  134 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecC
Confidence            999999999999999999999999999999999999999999999999988763

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.90  E-value=1.6e-23  Score=166.75  Aligned_cols=120  Identities=18%  Similarity=0.199  Sum_probs=108.3

Q ss_pred             CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481          168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv  247 (296)
                      .+....++.|++.|.+.+ .+..       |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++
T Consensus        12 ~g~~~~v~~Ll~~g~~~~-~~~~-------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   83 (153)
T 1awc_B           12 AGQDDEVRILMANGAPFT-TDWL-------GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIV   83 (153)
T ss_dssp             HTCHHHHHHHHHHTCCCC-CCTT-------CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC-cCCC-------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHH
Confidence            345667788888887665 2333       44599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          248 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       248 ~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        84 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  131 (153)
T 1awc_B           84 EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK  131 (153)
T ss_dssp             HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            999999999999999999999999999999999999999999998874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.89  E-value=1.4e-23  Score=170.18  Aligned_cols=122  Identities=20%  Similarity=0.195  Sum_probs=94.4

Q ss_pred             CCCCCcCcccccCCCCC-CCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q 022481          167 GSTSNSNFSSIFNPGQV-TNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  245 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~~-~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~  245 (296)
                      ..+....++.|+..+.. .+..+..+.+       |||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus        11 ~~g~~~~v~~ll~~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (172)
T 3v30_A           11 AQGELDQLKEHLRKGDNLVNKPDERGFT-------PLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD   83 (172)
T ss_dssp             HTTCHHHHHHHHTTCSGGGGCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHcCcccccCCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHH
Confidence            34555667777777665 5666655555       888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          246 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       246 iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  133 (172)
T 3v30_A           84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD  133 (172)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            88888888888888888888888888888888888888888888877653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.89  E-value=5.1e-23  Score=165.65  Aligned_cols=121  Identities=17%  Similarity=0.216  Sum_probs=103.9

Q ss_pred             CCCCcCcccccCC-CCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 022481          168 STSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  246 (296)
Q Consensus       168 ~~~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i  246 (296)
                      .+....++.|+.. +...+..+..+.       ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus        18 ~g~~~~v~~ll~~~~~~~~~~~~~g~-------t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   90 (165)
T 3twr_A           18 AGDVETVKKLCTVQSVNCRDIEGRQS-------TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV   90 (165)
T ss_dssp             HTCHHHHHHHCCTTTTTCCCTTTTCC-------CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hCCHHHHHHHHHcCCCCccccccCCC-------CHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHH
Confidence            3455667777764 344444444444       49999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          247 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       247 v~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        91 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  139 (165)
T 3twr_A           91 AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR  139 (165)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            9999999999999999999999999999999999999999999988774

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=3.3e-23  Score=169.27  Aligned_cols=119  Identities=22%  Similarity=0.228  Sum_probs=70.6

Q ss_pred             CCCcCcccccCC-CCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481          169 TSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       169 ~~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv  247 (296)
                      +....++.|+.. +.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        16 g~~~~v~~ll~~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   88 (179)
T 3f6q_A           16 GNAVAVRLWLDNTENDLNQGDDHGFS-------PLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIV   88 (179)
T ss_dssp             TCHHHHHHHHHCTTSCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHhcCcccccccCCCCCC-------HHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            334445555544 3344444444443       66666666666666666666666666666666666666666666666


Q ss_pred             HHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          248 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       248 ~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        89 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  135 (179)
T 3f6q_A           89 QKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN  135 (179)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCC
T ss_pred             HHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhc
Confidence            66666666666666666666666666666666666666666665554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.89  E-value=2.6e-23  Score=167.68  Aligned_cols=124  Identities=23%  Similarity=0.200  Sum_probs=112.9

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      ++..+....++.|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus        10 A~~~g~~~~v~~ll~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A           10 LAAQGEMLYLATRIEQENVINHTDEEGFT-------PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             HHHTTCHHHHHHHHHHSSCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHCCCHHHHHHHHHcCCCcCCCCCCCCC-------HHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            34456677788899999888888877766       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  133 (167)
T 3v31_A           83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD  133 (167)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            999999999999999999999999999999999999999999999988764

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=4e-24  Score=152.75  Aligned_cols=70  Identities=26%  Similarity=0.585  Sum_probs=64.4

Q ss_pred             CCCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCC------CceeccccchhhhcccC
Q 022481            2 SIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIH------TNVRVCADCFNSSSRTG   71 (296)
Q Consensus         2 ~~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~------~~~rvC~~C~~~~~~~~   71 (296)
                      ...|+||.++..|+.|+++|++|+||||||.||+|||..|+.+++++|.++..      +++|||+.||..|+...
T Consensus         5 ~~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~~   80 (84)
T 1x4u_A            5 SSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSG   80 (84)
T ss_dssp             CCCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSCC
T ss_pred             CCccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhccC
Confidence            46899999999999999999999999999999999999999999999988753      67999999999997653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.89  E-value=6.4e-23  Score=174.84  Aligned_cols=123  Identities=17%  Similarity=0.181  Sum_probs=87.6

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      ++..+...+++.|++.|++++..+..+.+       |||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus        28 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t-------pLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~  100 (229)
T 2vge_A           28 AALTGELEVVQQAVKEMNDPSQPNEEGIT-------ALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDT  100 (229)
T ss_dssp             HHHHTCHHHHHHHHHHSSCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            33445666677777777777766655555       77777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHCCCCCCccC-CCCCCHhhHh--hhcCcHHHHHHHHHcCCCCCCCC
Q 022481          245 DIAFILMESGANMDCKN-AQGESPLDCA--PVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d-~~g~TpL~~A--~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      +++++||++|++++..+ ..|+||||+|  +..|+.+++++|+++|++++.+|
T Consensus       101 ~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~  153 (229)
T 2vge_A          101 VICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN  153 (229)
T ss_dssp             HHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSG
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCccccc
Confidence            77777777777777765 4777777777  67777777777777777776654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.89  E-value=3.4e-23  Score=170.95  Aligned_cols=124  Identities=22%  Similarity=0.270  Sum_probs=115.1

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      +...+....++.|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        42 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  114 (192)
T 2rfm_A           42 ACMLGMENAIDKLVENFDKLEDKDIEGST-------ALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYS  114 (192)
T ss_dssp             HHHHTCGGGHHHHHHHHCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHcCCHHHHHHHHHhccccccccccCcc-------HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Confidence            33446778899999999998888777666       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       115 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  165 (192)
T 2rfm_A          115 EMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL  165 (192)
T ss_dssp             HHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            999999999999999999999999999999999999999999999998764

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=8.5e-23  Score=159.50  Aligned_cols=99  Identities=24%  Similarity=0.388  Sum_probs=95.7

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      .+.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~   92 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH   92 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            46779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCC
Q 022481          277 YKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       277 ~~iv~~Ll~~gadi~~~n~  295 (296)
                      .+++++|+++|++++.+|.
T Consensus        93 ~~~v~~Ll~~g~~~~~~~~  111 (136)
T 2jab_A           93 LEIAEVLLKHGADVNAQDK  111 (136)
T ss_dssp             HHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHcCCCCcCcCC
Confidence            9999999999999998864

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=4.3e-23  Score=161.20  Aligned_cols=106  Identities=17%  Similarity=0.243  Sum_probs=99.1

Q ss_pred             CCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC
Q 022481          182 QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN  261 (296)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d  261 (296)
                      .+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+. ++.+++++|+++|++++.+|
T Consensus         3 ~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~   74 (136)
T 1d9s_A            3 PGIHMLGGSSDA-------GLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD   74 (136)
T ss_dssp             CCCSCCCCCCSC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCB
T ss_pred             CCccCCCCCCcc-------HHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcC
Confidence            455666665555       9999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             CC-CCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          262 AQ-GESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       262 ~~-g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      .. |+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        75 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~  109 (136)
T 1d9s_A           75 PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA  109 (136)
T ss_dssp             TTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence            99 99999999999999999999999999998874

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=5.5e-23  Score=164.72  Aligned_cols=114  Identities=19%  Similarity=0.195  Sum_probs=101.6

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF  248 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~  248 (296)
                      +...++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus        48 ~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~  120 (162)
T 1ihb_A           48 GNPEIARRLLLRGANPDLKDRTGFA-------VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE  120 (162)
T ss_dssp             SCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            7778888999999988888776666       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCC-CCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          249 ILMESGAN-MDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       249 ~LL~~ga~-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      +|+++|++ ++..|..|+||||+|+..|+.+++++|+++|||
T Consensus       121 ~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          121 FLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999988 589999999999999999999999999999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=5.3e-23  Score=157.31  Aligned_cols=114  Identities=28%  Similarity=0.371  Sum_probs=106.5

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF  248 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~  248 (296)
                      +...+++.|++.|.+++..+..+.+       +||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++
T Consensus        13 ~~~~~v~~Ll~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~   85 (126)
T 1n0r_A           13 GHLEVVKLLLEAGADVNAKDKNGRT-------PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK   85 (126)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHHcCCCCCCcCCCCCc-------HHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHH
Confidence            4556788899999988888776666       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          249 ILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       249 ~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      +|+++|++++.+|..|.||||+|+..|+.+++++|+++|||
T Consensus        86 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           86 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999986

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=1.3e-23  Score=159.28  Aligned_cols=99  Identities=30%  Similarity=0.432  Sum_probs=94.4

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      .|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~   87 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH   87 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCC
Confidence            44569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCC
Q 022481          277 YKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       277 ~~iv~~Ll~~gadi~~~n~  295 (296)
                      .+++++|+++|+++|.++.
T Consensus        88 ~~~~~~Ll~~ga~~n~~~~  106 (115)
T 2l6b_A           88 HEIVKLLDAKGADVNARSW  106 (115)
T ss_dssp             HHHHHHHHTTSSSHHHHSC
T ss_pred             HHHHHHHHHcCCCCCcCCc
Confidence            9999999999999987653

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=99.89  E-value=4.6e-24  Score=152.31  Aligned_cols=69  Identities=35%  Similarity=0.697  Sum_probs=65.3

Q ss_pred             CCCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481            2 SIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   70 (296)
Q Consensus         2 ~~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   70 (296)
                      ...|+||.++..|+.|+++|++|+||||||.||+|||+.|+.+++++|..+..+++|||+.||..++..
T Consensus        12 ~~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~   80 (84)
T 1z2q_A           12 KGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSS   80 (84)
T ss_dssp             CSCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTS
T ss_pred             CCccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhc
Confidence            458999999999999999999999999999999999999999999999998789999999999998765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.88  E-value=6.2e-23  Score=164.41  Aligned_cols=121  Identities=19%  Similarity=0.285  Sum_probs=112.2

Q ss_pred             CCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 022481          167 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  246 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i  246 (296)
                      ..+....++.|++.|.+++..+..+.+       |||+|+. |+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus        14 ~~g~~~~v~~Ll~~~~~~~~~~~~g~t-------~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   85 (162)
T 1ihb_A           14 ARGDLEQLTSLLQNNVNVNAQNGFGRT-------ALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   85 (162)
T ss_dssp             HHTCHHHHHHHTTSCCCTTCCCTTSCC-------HHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HcCCHHHHHHHHhCCCCccccCccCcc-------HHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            345667789999999999888877776       9999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC-CCCCCC
Q 022481          247 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN-VGSTTS  295 (296)
Q Consensus       247 v~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-i~~~n~  295 (296)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|.
T Consensus        86 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  135 (162)
T 1ihb_A           86 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH  135 (162)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCC
Confidence            9999999999999999999999999999999999999999998 577664

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.88  E-value=2.5e-23  Score=177.33  Aligned_cols=117  Identities=21%  Similarity=0.234  Sum_probs=101.7

Q ss_pred             cccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 022481          174 FSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES  253 (296)
Q Consensus       174 ~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~  253 (296)
                      ++.|+..|+.++..+..+..    +.|+||+|+..|+.++|++|++.|+++|.+|..|+||||+|+..|+.+++++||++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~----~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~   76 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLN----PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA   76 (229)
T ss_dssp             ---------CCCCCCCTTSC----HHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CeehhccCCCCccccccccc----hhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            35788889988877755443    56799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          254 GANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       254 ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      |++++.+|..|+||||+|+..|+.+++++|+++|++++.++
T Consensus        77 ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~  117 (229)
T 2vge_A           77 GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT  117 (229)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            99999999999999999999999999999999999999875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.88  E-value=1e-22  Score=166.24  Aligned_cols=126  Identities=23%  Similarity=0.258  Sum_probs=116.5

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      ...+...+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        43 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~  115 (179)
T 3f6q_A           43 LHWACREGRSAVVEMLIMRGARINVMNRGDDT-------PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW  115 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            33444556778899999999999998877766       99999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      |+.+++++|+++|++++.+|..|.|||++|+..++.+++++|+++|++++..+
T Consensus       116 ~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~  168 (179)
T 3f6q_A          116 GQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP  168 (179)
T ss_dssp             TCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBC
T ss_pred             CCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCC
Confidence            99999999999999999999999999999999999999999999999998654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.88  E-value=2.3e-22  Score=174.87  Aligned_cols=98  Identities=21%  Similarity=0.247  Sum_probs=93.3

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481          198 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       198 ~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~-g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      |.||||+|+..|+.++|++|+++|++++..+.. |+||||+|+..|+.+++++||++|++++.+|..|+||||+|+..|+
T Consensus       158 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~  237 (282)
T 1oy3_D          158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN  237 (282)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCC
Confidence            445999999999999999999999999999855 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCC
Q 022481          277 YKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       277 ~~iv~~Ll~~gadi~~~n~  295 (296)
                      .+++++|+++||+++.+|.
T Consensus       238 ~~~v~~Ll~~ga~~~~~~~  256 (282)
T 1oy3_D          238 PILARLLRAHGAPEPEDGG  256 (282)
T ss_dssp             HHHHHHHHHTTCCCCCCC-
T ss_pred             cHHHHHHHHcCCCcCcCCC
Confidence            9999999999999998874

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.88  E-value=5.8e-23  Score=166.46  Aligned_cols=126  Identities=20%  Similarity=0.149  Sum_probs=115.7

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      ...+...+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus        40 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  112 (172)
T 3v30_A           40 LIWASAFGEIETVRFLLEWGADPHILAKERES-------ALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG  112 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCC-------HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCchhhcccCCC-------HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            33344556778899999999999998877766       99999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++...|
T Consensus       113 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~  165 (172)
T 3v30_A          113 NHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN  165 (172)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred             CCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999877665

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.87  E-value=3.7e-22  Score=174.24  Aligned_cols=117  Identities=19%  Similarity=0.207  Sum_probs=105.4

Q ss_pred             cCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 022481          172 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM  251 (296)
Q Consensus       172 ~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL  251 (296)
                      .++..|+..|+++|..+..|.+       |||+|+..|+.++|++|++.|++++..+..|.||||+|+..++.+++++|+
T Consensus        67 ~~v~~Ll~~Gadvn~~d~~G~T-------pLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  139 (269)
T 4b93_B           67 KRLAKVPASGLGVNVTSQDGSS-------PLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL  139 (269)
T ss_dssp             --------CCCCTTCCCTTSCC-------HHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHH
Confidence            4678899999999999887776       999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          252 ESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       252 ~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++|+++|.+|..|+||||+|+..|+.++|++|+++|+|+|.+|.
T Consensus       140 ~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~  183 (269)
T 4b93_B          140 DSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNN  183 (269)
T ss_dssp             HTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCT
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCcccc
Confidence            99999999999999999999999999999999999999998764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.87  E-value=3.3e-22  Score=160.88  Aligned_cols=119  Identities=21%  Similarity=0.248  Sum_probs=108.5

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      ...+...+...++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus        46 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  118 (165)
T 3twr_A           46 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLV-------PLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK  118 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHcChHHHHHHHHhcCCCCCccCCCCCC-------HHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc
Confidence            33444556778899999999999998887776       99999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKN  288 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  288 (296)
                      |+.+++++|+++|++++.+|..|+||||+|.. ++.+++++|+++||
T Consensus       119 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          119 GKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            99999999999999999999999999999877 89999999999987

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.87  E-value=5.7e-22  Score=167.77  Aligned_cols=124  Identities=15%  Similarity=0.159  Sum_probs=113.6

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      +...+...++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  152 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHVNAVNQNGCT-------PLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL  152 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHcCHHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            33445667889999999999888777666       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       153 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  203 (231)
T 3aji_A          153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENK  203 (231)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             HHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999998874

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.87  E-value=1e-22  Score=174.26  Aligned_cols=126  Identities=21%  Similarity=0.155  Sum_probs=115.3

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      ...++..+...+++.|++.|++++..+..+.+       |||+|+..|+.+++++||++|+++|.+|..|+||||+|+..
T Consensus        41 L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t-------~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~  113 (239)
T 1ycs_B           41 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGIT-------ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC  113 (239)
T ss_dssp             HHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCC-------HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            33344556778899999999999998877776       99999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCC-CHhhHh--hhcCcHHHHHHHHHcCCCCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGE-SPLDCA--PVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~-TpL~~A--~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      |+.+++++||++|++++..|..|. ||||+|  +..|+.+++++|+++|++++..+
T Consensus       114 ~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~  169 (239)
T 1ycs_B          114 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN  169 (239)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTG
T ss_pred             CCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccc
Confidence            999999999999999999998877 999999  78899999999999999988764

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.87  E-value=8.1e-22  Score=167.77  Aligned_cols=125  Identities=17%  Similarity=0.142  Sum_probs=77.0

Q ss_pred             cCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCC------CcccCCCCCcHHH
Q 022481          163 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVD------ANFCDKQGMSLLH  236 (296)
Q Consensus       163 ~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gad------vn~~d~~g~TpLh  236 (296)
                      ..+...+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|++.|++      ++..|..|+||||
T Consensus        50 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~  122 (236)
T 1ikn_D           50 HLAVITNQPEIAEALLGAGCDPELRDFRGNT-------PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH  122 (236)
T ss_dssp             HHHHHTTCHHHHHCCCSCCCCSCCCCTTCCC-------HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHH
Confidence            3344456677788888888888887766655       66666666666666666655543      3444555666666


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCccCC-CCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          237 LAALFNRTDIAFILMESGANMDCKNA-QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       237 ~A~~~g~~~iv~~LL~~ga~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      +|+..|+.+++++||++|++++.++. .|+||||+|+..|+.+++++|+++|++++.+|
T Consensus       123 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  181 (236)
T 1ikn_D          123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT  181 (236)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Confidence            66666666666666666666665555 56666666666666666666666666555554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.87  E-value=6.1e-22  Score=167.13  Aligned_cols=124  Identities=16%  Similarity=0.087  Sum_probs=113.9

Q ss_pred             CCCCCCCcCcccccCCC--CCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481          165 SRGSTSNSNFSSIFNPG--QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  242 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g--~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g  242 (296)
                      +...+...+++.|++.|  .+.+..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus        79 A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  151 (228)
T 2dzn_A           79 ACSVGNLEVVKSLYDRPLKPDLNKITNQGVT-------CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG  151 (228)
T ss_dssp             HHHHCCHHHHHHHHSSSSCCCTTCCCTTCCC-------HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHhCCCCcccccCCcCCCC-------HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            33445677889999998  777777766665       999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCC-CCCCccCCCCCCHhhHhhhcCcHHHHHHHH-HcCCCCCCCCC
Q 022481          243 RTDIAFILMESG-ANMDCKNAQGESPLDCAPVTLQYKMRQKME-EDKNNVGSTTS  295 (296)
Q Consensus       243 ~~~iv~~LL~~g-a~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll-~~gadi~~~n~  295 (296)
                      +.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+ ++|++++.+|.
T Consensus       152 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~  206 (228)
T 2dzn_A          152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN  206 (228)
T ss_dssp             CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT
T ss_pred             CHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCC
Confidence            999999999999 999999999999999999999999999999 89999998874

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=99.87  E-value=3.6e-23  Score=147.00  Aligned_cols=67  Identities=36%  Similarity=0.719  Sum_probs=58.3

Q ss_pred             CCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481            3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG   71 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~   71 (296)
                      ..|++|.++..|+.|+++|++|+||||||.||+|||+.|+.+++++|.+  .+++|||+.||..|....
T Consensus        11 ~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~--~~~~RVC~~C~~~l~~~~   77 (82)
T 2yw8_A           11 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSY--PKPVRVCDSCHTLLLQRC   77 (82)
T ss_dssp             ----CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTTC--SSCEEECHHHHHHTTC--
T ss_pred             CccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCCC--CCcCEECHHHHHHHHHhc
Confidence            5799999999999999999999999999999999999999999999875  589999999999987653

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.87  E-value=3.4e-22  Score=172.26  Aligned_cols=122  Identities=24%  Similarity=0.271  Sum_probs=105.1

Q ss_pred             CCCCCcCcccccCCCC-CCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q 022481          167 GSTSNSNFSSIFNPGQ-VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  245 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~-~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~  245 (296)
                      ..+...++++|+..+. +++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus        99 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~  171 (253)
T 1yyh_A           99 SADAQGVFQILIRNRATDLDARMHDGTT-------PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD  171 (253)
T ss_dssp             HHTCHHHHHHHHHSTTSCTTCCCTTCCC-------HHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCc-------HHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            3455566777777765 66666655555       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          246 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       246 iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       172 ~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~  221 (253)
T 1yyh_A          172 AAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH  221 (253)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence            99999999999999999999999999999999999999999999988774

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.87  E-value=5.9e-22  Score=160.34  Aligned_cols=118  Identities=22%  Similarity=0.285  Sum_probs=109.1

Q ss_pred             cCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481          163 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  242 (296)
Q Consensus       163 ~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g  242 (296)
                      ..+...+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus        52 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  124 (169)
T 2y1l_E           52 HLAAFNGHLEIVEVLLKNGADVNAVDHAGMT-------PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG  124 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            3344456778899999999999988877766       999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcC
Q 022481          243 RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  287 (296)
Q Consensus       243 ~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  287 (296)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       125 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          125 HLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.6e-21  Score=149.04  Aligned_cols=98  Identities=31%  Similarity=0.428  Sum_probs=94.7

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcH
Q 022481          198 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQY  277 (296)
Q Consensus       198 ~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~  277 (296)
                      |.|+||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCC
Q 022481          278 KMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       278 ~iv~~Ll~~gadi~~~n~  295 (296)
                      +++++|+++|++++.+|.
T Consensus        82 ~~~~~Ll~~g~~~~~~~~   99 (126)
T 1n0r_A           82 EVVKLLLEAGADVNAKDK   99 (126)
T ss_dssp             HHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHcCCCCcccCC
Confidence            999999999999998764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.86  E-value=1e-21  Score=166.40  Aligned_cols=120  Identities=16%  Similarity=0.195  Sum_probs=76.9

Q ss_pred             CCCCcCcccccCC-CCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCC-----cccCCCCCcHHHHHHHc
Q 022481          168 STSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDA-----NFCDKQGMSLLHLAALF  241 (296)
Q Consensus       168 ~~~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadv-----n~~d~~g~TpLh~A~~~  241 (296)
                      .+....++.|+.. |.+++..+..+.+       |||+|+..|+.+++++|+++|+++     +..|..|+||||+|+..
T Consensus        13 ~g~~~~v~~Ll~~~g~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~   85 (232)
T 2rfa_A           13 ENDVQALSKLLKFEGCEVHQRGAMGET-------ALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN   85 (232)
T ss_dssp             TTCHHHHHHHHTTTCSCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHT
T ss_pred             cCCHHHHHHHHHhcCCCcccCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHc
Confidence            3444556666665 6666666655554       666666666666666666666655     44555666666666666


Q ss_pred             CCHHHHHHHHHCCCCCCccCC-------------CCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNA-------------QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~-------------~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      |+.+++++|+++|++++..+.             .|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        86 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d  151 (232)
T 2rfa_A           86 QNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQD  151 (232)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            666666666666666666544             56666666666666666666666666666655

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=1.1e-21  Score=160.91  Aligned_cols=99  Identities=19%  Similarity=0.253  Sum_probs=94.8

Q ss_pred             ccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHhhHhhhc
Q 022481          196 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN-AQGESPLDCAPVT  274 (296)
Q Consensus       196 ~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d-~~g~TpL~~A~~~  274 (296)
                      ..|.||||+|+..|+.+++++||+ |+++|.+|..|+||||+|+..|+.+++++|+++|++++.+| ..|+||||+|+..
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            357789999999999999999999 99999999999999999999999999999999999999998 8899999999999


Q ss_pred             CcHHHHHHHHHcCCCCCCCCC
Q 022481          275 LQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       275 g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |+.+++++|+++|++++.+|.
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~  141 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDE  141 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCT
T ss_pred             CcHHHHHHHHHcCCCCcCCCC
Confidence            999999999999999998874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.86  E-value=1e-21  Score=156.41  Aligned_cols=113  Identities=20%  Similarity=0.237  Sum_probs=88.9

Q ss_pred             CCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q 022481          166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  245 (296)
Q Consensus       166 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~  245 (296)
                      +..+...+++.|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus        43 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  115 (156)
T 1bd8_A           43 MMFGSTAIALELLKQGASPNVQDTSGTS-------PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA  115 (156)
T ss_dssp             SCTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHH
Confidence            4556667777788888877777766655       888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481          246 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  286 (296)
Q Consensus       246 iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  286 (296)
                      ++++|+++ ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       116 ~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          116 VVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            88888877 88888888888888888888888888888764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.86  E-value=9e-22  Score=156.72  Aligned_cols=118  Identities=18%  Similarity=0.216  Sum_probs=106.8

Q ss_pred             CCCcCcccccCC-CCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481          169 TSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       169 ~~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv  247 (296)
                      +....++.|++. +.+++..+..+.+       |||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus        13 g~~~~v~~ll~~~~~~~~~~~~~g~t-------~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   84 (156)
T 1bd8_A           13 GDVQEVRRLLHRELVHPDALNRFGKT-------ALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTL   84 (156)
T ss_dssp             TCHHHHHHHHHTTCCCTTCCCTTSCC-------HHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHhhCcCccccCCCCCc-------HHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            455567777766 3477777766665       9999 999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          248 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       248 ~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++.+|.
T Consensus        85 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~  131 (156)
T 1bd8_A           85 KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDA  131 (156)
T ss_dssp             HHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCT
T ss_pred             HHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCC
Confidence            999999999999999999999999999999999999999 99988764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.86  E-value=1.4e-21  Score=164.46  Aligned_cols=120  Identities=24%  Similarity=0.275  Sum_probs=79.5

Q ss_pred             CCCCcCcccccCCCC-CCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 022481          168 STSNSNFSSIFNPGQ-VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  246 (296)
Q Consensus       168 ~~~~~~~~~ll~~g~-~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i  246 (296)
                      .+...++++|++.+. ..+..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.++
T Consensus        68 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  140 (223)
T 2f8y_A           68 ADAQGVFQILIRNRATDLDARMHDGTT-------PLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA  140 (223)
T ss_dssp             TTCHHHHHHHHHBTTSCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCCc-------HHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHH
Confidence            344555566665554 44444444443       6777777777777777777777777767667777777777777777


Q ss_pred             HHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          247 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       247 v~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      +++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       141 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  188 (223)
T 2f8y_A          141 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD  188 (223)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            777777777777777777777777777777777777777777766654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=1.3e-21  Score=165.23  Aligned_cols=99  Identities=20%  Similarity=0.199  Sum_probs=88.5

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCCHhhHhhhcC
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTL  275 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~-ga~~~~~d~~g~TpL~~A~~~g  275 (296)
                      .|.|+||+|+..|+.++|++||+.|++++.+|..|+||||+|+..|+.+++++||++ |++++.+|..|+||||+|+..|
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence            346799999999999999999999999999999999999999999999999999988 9999999999999999999999


Q ss_pred             cHHHHHHHHHcCCCCCCCCC
Q 022481          276 QYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       276 ~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +.+++++|+++|++++.+|.
T Consensus       152 ~~~~v~~Ll~~ga~~~~~~~  171 (222)
T 3ehr_A          152 YADIVQLLLAKGARTDLRNI  171 (222)
T ss_dssp             CHHHHHHHHHHTCCSCCCCT
T ss_pred             CHHHHHHHHHcCCCCccccC
Confidence            99999999999999888764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.86  E-value=1.5e-21  Score=171.56  Aligned_cols=127  Identities=17%  Similarity=0.190  Sum_probs=110.4

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCC------------
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDK------------  229 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~------------  229 (296)
                      ...+...+...++++|++.|++++..+..+.+       |||+|+..|+.++|++|+++|++++..|.            
T Consensus        77 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-------pL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  149 (299)
T 1s70_B           77 LHQACIDDNVDMVKFLVENGANINQPDNEGWI-------PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE  149 (299)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc-------HHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc
Confidence            33444556778889999999999888877666       99999999999999999999998887653            


Q ss_pred             ------------------------------------------------CCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC
Q 022481          230 ------------------------------------------------QGMSLLHLAALFNRTDIAFILMESGANMDCKN  261 (296)
Q Consensus       230 ------------------------------------------------~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d  261 (296)
                                                                      .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       150 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d  229 (299)
T 1s70_B          150 AMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD  229 (299)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC
T ss_pred             chHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcC
Confidence                                                            46788888999999999999999999999999


Q ss_pred             CCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          262 AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       262 ~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ..|+||||+|+..|+.+++++|+++|++++++|.
T Consensus       230 ~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~  263 (299)
T 1s70_B          230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (299)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCC
Confidence            9999999999999999999999999999998875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.86  E-value=6.2e-22  Score=158.20  Aligned_cols=98  Identities=16%  Similarity=0.234  Sum_probs=93.6

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCC-HhhHhhhcC
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGES-PLDCAPVTL  275 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~T-pL~~A~~~g  275 (296)
                      .+.|+||+|+..|+.++|++|+++|++++..|..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+..|
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~   89 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   89 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCC
Confidence            4556999999999999999999999999999999999999985 99999999999999999999999999 999999999


Q ss_pred             cHHHHHHHHHcCCCCCCCCC
Q 022481          276 QYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       276 ~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +.+++++|+++|++++.+|.
T Consensus        90 ~~~~v~~Ll~~ga~~~~~d~  109 (156)
T 1bi7_B           90 FLDTLVVLHRAGARLDVRDA  109 (156)
T ss_dssp             CHHHHHHHHHHTCCSSCCCT
T ss_pred             CHHHHHHHHHcCCCCcccCC
Confidence            99999999999999998874

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=3e-22  Score=169.10  Aligned_cols=121  Identities=21%  Similarity=0.199  Sum_probs=102.0

Q ss_pred             CCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCCHH
Q 022481          167 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTD  245 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~  245 (296)
                      ..+...+++.|++.|.+++..+..+.+       |||+|+..|+.++|++||+. |+++|.+|..|+||||+|+..|+.+
T Consensus        82 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~  154 (222)
T 3ehr_A           82 KRGNLSWLRECLDNRVGVNGLDKAGST-------ALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYAD  154 (222)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHH
T ss_pred             ccCcHHHHHHHHhCCCCccccCCCCCC-------HHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHH
Confidence            345667789999999999988877766       99999999999999999998 9999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          246 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       246 iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      ++++||++|++++.+|..|+||||+|+..++.++++.|+++|++.+..|
T Consensus       155 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          155 IVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             HHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence            9999999999999999999999999999999999999999999987765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.85  E-value=2.7e-21  Score=164.20  Aligned_cols=125  Identities=24%  Similarity=0.233  Sum_probs=114.6

Q ss_pred             CCCCCCCCcCcccccCCC-CCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481          164 RSRGSTSNSNFSSIFNPG-QVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  242 (296)
Q Consensus       164 ~~~~~~~~~~~~~ll~~g-~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g  242 (296)
                      .+...+...++++|+..| ...+..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus        83 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           83 LAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT-------PMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG  155 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcccCCCCCCC-------HHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCC
Confidence            334456778889999988 777777766666       999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          243 RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       243 ~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|+
T Consensus       156 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~  208 (237)
T 3b7b_A          156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK  208 (237)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCC
Confidence            99999999999999999999999999999999999999999999999998874

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.85  E-value=9.2e-22  Score=162.45  Aligned_cols=98  Identities=14%  Similarity=0.107  Sum_probs=66.5

Q ss_pred             ChHHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC------HHHHHHHHHCCCCCCccCCCCC-C
Q 022481          198 NGEGLRDAIKNGDA----AAVKKLLSEGVDANFCDKQGMSLLHLAALFNR------TDIAFILMESGANMDCKNAQGE-S  266 (296)
Q Consensus       198 ~~t~Lh~A~~~g~~----~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~------~~iv~~LL~~ga~~~~~d~~g~-T  266 (296)
                      |.||||+|+..|+.    +++++||++|+++|.+|..|+||||+|+..++      .+++++||++||++|.+|..|+ |
T Consensus        38 g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tt  117 (186)
T 3t8k_A           38 KSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIV  117 (186)
T ss_dssp             TTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBC
T ss_pred             CCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCch
Confidence            44577777777654    36777777777777777777777777776665      4567777777777777777777 7


Q ss_pred             HhhHhhhc-----CcHHHHHHHHH-cCCCCCCCCC
Q 022481          267 PLDCAPVT-----LQYKMRQKMEE-DKNNVGSTTS  295 (296)
Q Consensus       267 pL~~A~~~-----g~~~iv~~Ll~-~gadi~~~n~  295 (296)
                      |||+|+..     ++.+++++|++ +|+|++++|+
T Consensus       118 pLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~  152 (186)
T 3t8k_A          118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK  152 (186)
T ss_dssp             TTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT
T ss_pred             HHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC
Confidence            77777663     23456777777 6777776664

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.85  E-value=2e-21  Score=154.55  Aligned_cols=113  Identities=21%  Similarity=0.245  Sum_probs=105.3

Q ss_pred             CCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481          164 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  243 (296)
Q Consensus       164 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~  243 (296)
                      .+...+...++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus        40 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  112 (153)
T 1awc_B           40 LAAQYGHFSTTEVLLRAGVSRDARTKVDRT-------PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH  112 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            334446678899999999999988877766       9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHH
Q 022481          244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKM  283 (296)
Q Consensus       244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~L  283 (296)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus       113 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999999999999999999999987

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.85  E-value=2.5e-21  Score=163.81  Aligned_cols=124  Identities=26%  Similarity=0.286  Sum_probs=114.3

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      +...+...++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.
T Consensus        47 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  119 (231)
T 3aji_A           47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWS-------PLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH  119 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHcCcHHHHHHHHHhCCCCCCcCCCCCC-------HHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            34456677889999999999888877766       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       120 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  170 (231)
T 3aji_A          120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT  170 (231)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCC
Confidence            999999999999999999999999999999999999999999999998764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1.4e-21  Score=171.46  Aligned_cols=122  Identities=16%  Similarity=0.180  Sum_probs=104.6

Q ss_pred             CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      .++...+..++..|.+.+..... ......|.||||+|+..   |+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus       140 ~~d~~~~~~ll~~g~~~~~~~~l-~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~  218 (278)
T 1dcq_A          140 TRDIFGLLQAYADGVDLTEKIPL-ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA  218 (278)
T ss_dssp             TTCHHHHHHHHHTTCCTTSBCCC-SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             hcccHHHHHHHHhhcchhhhccc-cccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence            44555567778888875543200 01122456699999999   899999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCC
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV  290 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi  290 (296)
                      +++++||++||+++.+|.+|+||||+|+..|+.+++++|+++|++.
T Consensus       219 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999999864

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.85  E-value=1.5e-21  Score=168.23  Aligned_cols=127  Identities=15%  Similarity=0.132  Sum_probs=111.6

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCcHHHHHHH
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGV-DANFCDKQGMSLLHLAAL  240 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~ga-dvn~~d~~g~TpLh~A~~  240 (296)
                      ...++..+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|. +++..|..|.||||+|+.
T Consensus        61 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           61 LHLAARYSRSDAAKRLLEASADANIQDNMGRT-------PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            33444556777888999999988888777666       9999999999999999999886 889999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          241 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       241 ~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  188 (253)
T 1yyh_A          134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN  188 (253)
T ss_dssp             HTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            9999999999999999999999999999999999999999999999999988764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.85  E-value=2.2e-21  Score=164.94  Aligned_cols=124  Identities=19%  Similarity=0.201  Sum_probs=110.7

Q ss_pred             CCCCCCCcCcccccCCCC----CCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHH
Q 022481          165 SRGSTSNSNFSSIFNPGQ----VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAA  239 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~----~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~  239 (296)
                      +...+...+++.|+..+.    +.+..+..+.+       |||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus        86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~  158 (241)
T 1k1a_A           86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT-------ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  158 (241)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccccccCcCCCc-------HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH
Confidence            334556677888888776    56666655555       9999999999999999999999999998 88999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          240 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       240 ~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  214 (241)
T 1k1a_A          159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC  214 (241)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999999998874

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.85  E-value=9.6e-22  Score=158.46  Aligned_cols=123  Identities=22%  Similarity=0.148  Sum_probs=112.7

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      ...+...+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus        40 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  112 (167)
T 3v31_A           40 LMWAAAHGQIAVVEFLLQNGADPQLLGKGRES-------ALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG  112 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCc-------HHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHc
Confidence            33344456778899999999999988877766       99999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  291 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~  291 (296)
                      |+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++++++.
T Consensus       113 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          113 NHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.85  E-value=2.9e-21  Score=159.96  Aligned_cols=124  Identities=17%  Similarity=0.106  Sum_probs=106.5

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCcHHHHHHHcCC
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNR  243 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll-~~gadvn~~d~~g~TpLh~A~~~g~  243 (296)
                      +...+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+ ..+++++..|..|.||||+|+..|+
T Consensus        46 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  118 (201)
T 3hra_A           46 AVHNNDIEIAKALIDRGADINLQNSISDS-------PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH  118 (201)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCC
Confidence            33445677788899999988888776666       999999999999999999 5677899899999999999999999


Q ss_pred             HHHHHHHHHCC-CCCCccCCCCCCHhhHhhhcCc-----HHHHHHHHHcCCCCCCCCC
Q 022481          244 TDIAFILMESG-ANMDCKNAQGESPLDCAPVTLQ-----YKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       244 ~~iv~~LL~~g-a~~~~~d~~g~TpL~~A~~~g~-----~~iv~~Ll~~gadi~~~n~  295 (296)
                      .+++++|+++| ++++.+|..|+||||+|+..++     .+++++|+++|++++.+|.
T Consensus       119 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~  176 (201)
T 3hra_A          119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN  176 (201)
T ss_dssp             HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCC
Confidence            99999999998 8999999999999999998887     8999999999999988764

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}

Probab=99.85  E-value=1.7e-22  Score=145.85  Aligned_cols=72  Identities=28%  Similarity=0.581  Sum_probs=63.1

Q ss_pred             CCCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccCCCCC
Q 022481            2 SIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDNL   75 (296)
Q Consensus         2 ~~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~~~~   75 (296)
                      ...|++|.++..|+.|+++|++++||||||.||+|||..|+.+++++|..  .+++|||+.||..|+.......
T Consensus        11 ~p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~--~~~~RVC~~C~~~l~~~~~~~~   82 (90)
T 3t7l_A           11 QPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL--EKEARVCVVCYETISKAQAFER   82 (90)
T ss_dssp             CCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTT--TEEEEECHHHHHHHHHHC----
T ss_pred             CCcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCC--CCCCeECHHHHHHHHHHhhhcc
Confidence            35799999999999999999999999999999999999999999999875  4899999999999987755443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=2.4e-21  Score=166.46  Aligned_cols=99  Identities=19%  Similarity=0.253  Sum_probs=94.8

Q ss_pred             ccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCCHhhHhhhc
Q 022481          196 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN-AQGESPLDCAPVT  274 (296)
Q Consensus       196 ~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d-~~g~TpL~~A~~~  274 (296)
                      ..|.||||+|+..|+.++|++||+ |+++|.+|..|+||||+|+..|+.+++++||++|++++.+| ..|+||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            357789999999999999999999 99999999999999999999999999999999999999998 7899999999999


Q ss_pred             CcHHHHHHHHHcCCCCCCCCC
Q 022481          275 LQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       275 g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |+.+++++|+++|++++.+|.
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~  142 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDE  142 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999998875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.85  E-value=3.5e-21  Score=167.06  Aligned_cols=125  Identities=18%  Similarity=0.195  Sum_probs=115.7

Q ss_pred             CCCCCCCcCcccccCC-CCCCCCCCCCCccccccChHHHHHHHHcCC----HHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 022481          165 SRGSTSNSNFSSIFNP-GQVTNGATDKPRMEYEVNGEGLRDAIKNGD----AAAVKKLLSEGVDANFCDKQGMSLLHLAA  239 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~-g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~----~~~v~~Ll~~gadvn~~d~~g~TpLh~A~  239 (296)
                      +...+...+++.|++. |.+++..+..+.+       +||+|+..++    .+++++|+++|++++.+|..|.||||+|+
T Consensus       155 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t-------~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~  227 (285)
T 1wdy_A          155 AAEKGHVEVLKILLDEMGADVNACDNMGRN-------ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV  227 (285)
T ss_dssp             HHHHTCHHHHHHHHHTSCCCTTCCCTTSCC-------HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhcCCCCCccCCCCCC-------HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            3344567788889876 9999988877776       9999999999    99999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHH-CCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCCC
Q 022481          240 LFNRTDIAFILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV  296 (296)
Q Consensus       240 ~~g~~~iv~~LL~-~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~l  296 (296)
                      ..|+.+++++|++ +|++++.+|..|+||||+|+..|+.+++++|+++||+++.+|.+
T Consensus       228 ~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~~  285 (285)
T 1wdy_A          228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV  285 (285)
T ss_dssp             HTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSCC
T ss_pred             HcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccccC
Confidence            9999999999999 79999999999999999999999999999999999999999864

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.85  E-value=2.6e-21  Score=179.31  Aligned_cols=124  Identities=15%  Similarity=0.202  Sum_probs=113.6

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      ++..+...++++|+..|++.+..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.
T Consensus       252 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  324 (437)
T 1n11_A          252 AAQEGHAEMVALLLSKQANGNLGNKSGLT-------PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI  324 (437)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred             HHHCCCHHHHHHHHhcCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcH
Confidence            33456667788888888888887776666       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +++++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|+
T Consensus       325 ~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~  375 (437)
T 1n11_A          325 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS  375 (437)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCC
Confidence            999999999999999999999999999999999999999999999998874

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=99.85  E-value=1.1e-22  Score=141.13  Aligned_cols=64  Identities=39%  Similarity=0.867  Sum_probs=58.4

Q ss_pred             CCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481            3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   69 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   69 (296)
                      ..|+++   ..|+.|+++|++|+||||||.||+|||+.|+.+++++|.+|..+++|||+.||..++.
T Consensus         6 p~W~~~---~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~   69 (73)
T 1vfy_A            6 ADWIDS---DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEF   69 (73)
T ss_dssp             -CCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             CcCccC---CcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHHH
Confidence            467775   5899999999999999999999999999999999999999888899999999998764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.85  E-value=1.8e-21  Score=169.11  Aligned_cols=125  Identities=14%  Similarity=0.146  Sum_probs=108.9

Q ss_pred             CCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCC--------------------
Q 022481          164 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVD--------------------  223 (296)
Q Consensus       164 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gad--------------------  223 (296)
                      -++..+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++                    
T Consensus        51 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-------pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (282)
T 1oy3_D           51 LAAILGEASTVEKLYAAGAGVLVAERGGHT-------ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (282)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCTTSCC-------HHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcch
Confidence            334456677888999999998888777666       99999999999999999987754                    


Q ss_pred             ---------------------------CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCC-CCCHhhHhhhcC
Q 022481          224 ---------------------------ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ-GESPLDCAPVTL  275 (296)
Q Consensus       224 ---------------------------vn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~-g~TpL~~A~~~g  275 (296)
                                                 ++..|..|+||||+|+..|+.+++++||++|++++..+.. |+||||+|+..|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  203 (282)
T 1oy3_D          124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ  203 (282)
T ss_dssp             --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             hcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC
Confidence                                       6778889999999999999999999999999999999865 999999999999


Q ss_pred             cHHHHHHHHHcCCCCCCCCC
Q 022481          276 QYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       276 ~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +.+++++|+++|++++.+|.
T Consensus       204 ~~~~v~~Ll~~gad~~~~d~  223 (282)
T 1oy3_D          204 AASVLELLLKAGADPTARMY  223 (282)
T ss_dssp             CHHHHHHHHHTTCCTTCCCT
T ss_pred             CHHHHHHHHHcCCCCccccc
Confidence            99999999999999998874

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.85  E-value=1.6e-21  Score=160.81  Aligned_cols=118  Identities=18%  Similarity=0.174  Sum_probs=109.5

Q ss_pred             cCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 022481          163 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFN  242 (296)
Q Consensus       163 ~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g  242 (296)
                      ..+...+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus        73 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  145 (192)
T 2rfm_A           73 IWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT-------PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG  145 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc-------HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            3344456678899999999999988877766       999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcC
Q 022481          243 RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  287 (296)
Q Consensus       243 ~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  287 (296)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       146 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          146 RSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.85  E-value=4.7e-22  Score=171.56  Aligned_cols=125  Identities=20%  Similarity=0.172  Sum_probs=106.5

Q ss_pred             CCCCCcCcccccCCCCCCCCC----CCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC--------------
Q 022481          167 GSTSNSNFSSIFNPGQVTNGA----TDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD--------------  228 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~~~~~~----~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d--------------  228 (296)
                      ..+...++++|++.|++.+..    +.........|.||||+|+..|+.++|++||++|++++..|              
T Consensus        58 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  137 (260)
T 3jxi_A           58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYF  137 (260)
T ss_dssp             BTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSC
T ss_pred             hcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccc
Confidence            457788899999988654321    11111122256679999999999999999999999999998              


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH---CCCCCCccCCCCCCHhhHhhhcCc---------HHHHHHHHHcCCCCC
Q 022481          229 KQGMSLLHLAALFNRTDIAFILME---SGANMDCKNAQGESPLDCAPVTLQ---------YKMRQKMEEDKNNVG  291 (296)
Q Consensus       229 ~~g~TpLh~A~~~g~~~iv~~LL~---~ga~~~~~d~~g~TpL~~A~~~g~---------~~iv~~Ll~~gadi~  291 (296)
                      ..|+||||+|+..|+.+++++||+   +|++++.+|..|+||||+|+..++         .+++++|+++|++++
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence            689999999999999999999999   999999999999999999998777         799999999999983

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.85  E-value=2e-22  Score=166.40  Aligned_cols=117  Identities=14%  Similarity=0.079  Sum_probs=106.8

Q ss_pred             cCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCC------HHHHHHHHHcCCCCcccCCCCC-cHHHHHHHcC--
Q 022481          172 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGD------AAAVKKLLSEGVDANFCDKQGM-SLLHLAALFN--  242 (296)
Q Consensus       172 ~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~------~~~v~~Ll~~gadvn~~d~~g~-TpLh~A~~~g--  242 (296)
                      .++++|++.|+++|..+..+++       |||+|+..|+      .+++++||++|+++|.+|..|+ ||||+|+..+  
T Consensus        56 ~iv~~Ll~~Gadvn~~d~~g~T-------pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~  128 (186)
T 3t8k_A           56 KISMFLINKGADIKSRTKEGTT-------LFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVD  128 (186)
T ss_dssp             HHHHHHHHTTCCSSCCCTTCCC-------THHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCc-------HHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCC
Confidence            3689999999999999987777       9999999987      6889999999999999999999 9999999844  


Q ss_pred             ---CHHHHHHHHH-CCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          243 ---RTDIAFILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       243 ---~~~iv~~LL~-~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                         +.+++++||+ +|++++.+|..|+||||+|+..|+.++|++|++...+++++++
T Consensus       129 ~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~  185 (186)
T 3t8k_A          129 ENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN  185 (186)
T ss_dssp             HHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC-
T ss_pred             hhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcccC
Confidence               4679999999 9999999999999999999999999999999998887777764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.85  E-value=1.2e-20  Score=158.76  Aligned_cols=128  Identities=15%  Similarity=0.130  Sum_probs=104.6

Q ss_pred             cccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCcHHHHHH
Q 022481          161 NTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGV-DANFCDKQGMSLLHLAA  239 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~ga-dvn~~d~~g~TpLh~A~  239 (296)
                      ....++..+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|++++. +++..+..|.||||+|+
T Consensus        28 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           28 ALHLAARYSRSDAAKRLLEASADANIQDNMGRT-------PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred             hHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence            344445556777788888888888777766665       8888888888888888888876 78888888888888888


Q ss_pred             HcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          240 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       240 ~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ..++.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  156 (223)
T 2f8y_A          101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN  156 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            88888888888888888888888888888888888888888888888888887764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.85  E-value=6.8e-22  Score=154.33  Aligned_cols=118  Identities=21%  Similarity=0.173  Sum_probs=104.5

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      ++..+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        17 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   89 (137)
T 3c5r_A           17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWT-------PLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHV   89 (137)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCH
Confidence            33446677889999999999988877766       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      +++++|+++|++++.+|..|.||||+|+..+..+++++|.+.+..
T Consensus        90 ~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           90 DIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            999999999999999999999999999999999999988877654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.85  E-value=1e-21  Score=169.19  Aligned_cols=127  Identities=17%  Similarity=0.180  Sum_probs=109.8

Q ss_pred             CCCcCcccccCCCCCCCCCCCC----CccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCC-------------C
Q 022481          169 TSNSNFSSIFNPGQVTNGATDK----PRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQ-------------G  231 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~----~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~-------------g  231 (296)
                      +...++++|++.|++.+..+..    .......|.||||+|+..|+.+++++|+++|++++.+|..             |
T Consensus        57 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g  136 (256)
T 2etb_A           57 GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFG  136 (256)
T ss_dssp             TBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSC
T ss_pred             chHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCC
Confidence            6778899999998887644310    0011124566999999999999999999999999999886             9


Q ss_pred             CcHHHHHHHcCCHHHHHHHHH---CCCCCCccCCCCCCHhhHhhh--cCcHH-------HHHHHHHcCCCC-------CC
Q 022481          232 MSLLHLAALFNRTDIAFILME---SGANMDCKNAQGESPLDCAPV--TLQYK-------MRQKMEEDKNNV-------GS  292 (296)
Q Consensus       232 ~TpLh~A~~~g~~~iv~~LL~---~ga~~~~~d~~g~TpL~~A~~--~g~~~-------iv~~Ll~~gadi-------~~  292 (296)
                      +||||+|+..|+.+++++||+   +|++++.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.
T Consensus       137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  216 (256)
T 2etb_A          137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI  216 (256)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccc
Confidence            999999999999999999999   999999999999999999998  78888       999999999999       66


Q ss_pred             CCC
Q 022481          293 TTS  295 (296)
Q Consensus       293 ~n~  295 (296)
                      +|.
T Consensus       217 ~d~  219 (256)
T 2etb_A          217 SNH  219 (256)
T ss_dssp             CCT
T ss_pred             cCC
Confidence            664

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=1.5e-21  Score=177.63  Aligned_cols=118  Identities=22%  Similarity=0.320  Sum_probs=108.2

Q ss_pred             CCCC-CCCcCcccccCCCCCCCCCC--CCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          165 SRGS-TSNSNFSSIFNPGQVTNGAT--DKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       165 ~~~~-~~~~~~~~ll~~g~~~~~~~--~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      ++.. +...+++.|+..|++++..+  ..+.+       |||+|+..|+.++|++||++|+++|.+|..|+||||+|+..
T Consensus       206 Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~T-------pLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          206 ASGHPPSLPTMADALAHGADVNWVNGGQDNAT-------PLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHccCCHHHHHHHHHcCCCCCccccccCCCC-------HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            4445 77788999999999999877  44444       99999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      |+.+++++||++|++++.+|.+|.||||+|+..|+.+++++|++++..
T Consensus       279 g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999987643

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.84  E-value=4.9e-21  Score=162.26  Aligned_cols=123  Identities=15%  Similarity=0.142  Sum_probs=108.3

Q ss_pred             ccCCCCCCCCcCcccccCCCCCC-----CCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCC-------
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVT-----NGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDK-------  229 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~-----~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~-------  229 (296)
                      ..-+...+...++++|++.|++.     +..+..       |.||||+|+..|+.+++++|+++|++++..+.       
T Consensus        41 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~-------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~  113 (232)
T 2rfa_A           41 LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYE-------GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR  113 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTT-------TCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCchhccccccccCCC-------CcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeec
Confidence            33444556778899999999876     333334       44599999999999999999999999998876       


Q ss_pred             ------CCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHH----HHHHHcCCCCC
Q 022481          230 ------QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMR----QKMEEDKNNVG  291 (296)
Q Consensus       230 ------~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv----~~Ll~~gadi~  291 (296)
                            .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++    ++|+++|++++
T Consensus       114 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             TTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence                  799999999999999999999999999999999999999999999999988    99999999884

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.84  E-value=4.4e-21  Score=168.58  Aligned_cols=127  Identities=22%  Similarity=0.220  Sum_probs=111.5

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALF  241 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~  241 (296)
                      ...+...+....++.|+..|++++..+..+.+       |||+|+..|+.++|++|+++|++++..|..|+||||+|+..
T Consensus        44 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           44 FLAACSSGDTEEVLRLLERGADINYANVDGLT-------ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCB-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            33444557788899999999999888877666       99999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCC-----------------------------------------------------------
Q 022481          242 NRTDIAFILMESGANMDCKNA-----------------------------------------------------------  262 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~-----------------------------------------------------------  262 (296)
                      |+.+++++|+++|++++..|.                                                           
T Consensus       117 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  196 (299)
T 1s70_B          117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhc
Confidence            999999999999999887664                                                           


Q ss_pred             -CCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          263 -QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       263 -~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                       .|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       197 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~  230 (299)
T 1s70_B          197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY  230 (299)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC
Confidence             466778888888999999999999999998864

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.84  E-value=9.3e-21  Score=142.65  Aligned_cols=87  Identities=25%  Similarity=0.395  Sum_probs=84.2

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      .|+|+||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++||++|++++.+|..|+||||+|+..|+
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  102 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN  102 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence            45669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 022481          277 YKMRQKM  283 (296)
Q Consensus       277 ~~iv~~L  283 (296)
                      .+++++|
T Consensus       103 ~~~~~~L  109 (110)
T 2zgd_A          103 EDLAEIL  109 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.84  E-value=1.3e-21  Score=170.26  Aligned_cols=132  Identities=17%  Similarity=0.112  Sum_probs=111.6

Q ss_pred             cccCCCCCCCCcCcccccCCCCCCCCCCCCCc-------cccccChHHHHHHHHcCCHHHHHHHHH---cCCCCcccCCC
Q 022481          161 NTARSRGSTSNSNFSSIFNPGQVTNGATDKPR-------MEYEVNGEGLRDAIKNGDAAAVKKLLS---EGVDANFCDKQ  230 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~-------~~~~~~~t~Lh~A~~~g~~~~v~~Ll~---~gadvn~~d~~  230 (296)
                      .+..+...+...++++|++.|++++..+..+.       ..+..|.||||+|+..|+.++|++||+   +|++++.+|..
T Consensus       104 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~  183 (273)
T 2pnn_A          104 ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV  183 (273)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCC
Confidence            34444556778889999999999998876211       111245669999999999999999999   99999999999


Q ss_pred             CCcHHHHHHHcCC---------HHHHHHHHHCCCCCC-------ccCCCCCCHhhHhhhcCcHHHHHHHHHcCC-CCCC
Q 022481          231 GMSLLHLAALFNR---------TDIAFILMESGANMD-------CKNAQGESPLDCAPVTLQYKMRQKMEEDKN-NVGS  292 (296)
Q Consensus       231 g~TpLh~A~~~g~---------~~iv~~LL~~ga~~~-------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-di~~  292 (296)
                      |+||||+|+..|+         .+++++||++|++++       .+|..|+||||+|+..|+.+++++|+++|| |+..
T Consensus       184 g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          184 GNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPEC  262 (273)
T ss_dssp             SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC----
T ss_pred             CCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchh
Confidence            9999999999988         899999999999997       489999999999999999999999999999 6654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.84  E-value=1.2e-20  Score=168.77  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=109.4

Q ss_pred             CCCCcCcccccC-CCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 022481          168 STSNSNFSSIFN-PGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  246 (296)
Q Consensus       168 ~~~~~~~~~ll~-~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i  246 (296)
                      .+....++.|+. .+.+++..+..+.+       |||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++
T Consensus        34 ~g~~~~v~~ll~~~~~~~~~~d~~g~t-------~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~i  106 (351)
T 3utm_A           34 SGNEEKLMALLTPLNVNCHASDGRKST-------PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEV  106 (351)
T ss_dssp             HTCHHHHHHHCCTTTTTCCCSSTTCCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHHhcCCCcccCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHH
Confidence            345555555554 57888887777666       9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          247 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       247 v~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus       107 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  155 (351)
T 3utm_A          107 TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC  155 (351)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence            9999999999999999999999999999999999999999999988763

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.84  E-value=5.5e-21  Score=158.25  Aligned_cols=124  Identities=17%  Similarity=0.192  Sum_probs=111.4

Q ss_pred             CCCCCCCcCcccccCCCC-CCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481          165 SRGSTSNSNFSSIFNPGQ-VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  243 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~-~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~  243 (296)
                      ++..+....++.|+..+. +++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus        12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   84 (201)
T 3hra_A           12 AANQRDTKKVKEILQDTTYQVDEVDTEGNT-------PLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGR   84 (201)
T ss_dssp             HHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHhccHHHHHHHHHcCCCCCCCCCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            344556667777777765 88887776666       9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcC-CCCCCCCC
Q 022481          244 TDIAFILM-ESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK-NNVGSTTS  295 (296)
Q Consensus       244 ~~iv~~LL-~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-adi~~~n~  295 (296)
                      .+++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++.+|.
T Consensus        85 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  138 (201)
T 3hra_A           85 TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND  138 (201)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCT
T ss_pred             HHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC
Confidence            99999999 568899999999999999999999999999999999 99998774

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.84  E-value=2.4e-21  Score=148.48  Aligned_cols=108  Identities=19%  Similarity=0.198  Sum_probs=96.8

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      +...+....++.|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        14 A~~~~~~~~v~~ll~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~   86 (123)
T 3aaa_C           14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRK-------PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   86 (123)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSCCTTSSC-------HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHcCCHHHHHHHHHcCCCcCccCCCCCc-------HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCH
Confidence            34456677889999999999888877766       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHH
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM  279 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~i  279 (296)
                      +++++|+++|++++.+|.+|+||||+|...+..++
T Consensus        87 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           87 SCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            99999999999999999999999999965444433

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=2.2e-21  Score=172.03  Aligned_cols=129  Identities=20%  Similarity=0.177  Sum_probs=109.3

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLA  238 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A  238 (296)
                      ...+...+....+..|+..|.+++...... .....|.||||+|+..   |+.+++++||++|+++|.+|..|+||||+|
T Consensus       155 L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A  233 (301)
T 2b0o_E          155 LWTAICNRDLLSVLEAFANGQDFGQPLPGP-DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYA  233 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSCEECS-SSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHH
T ss_pred             HhhhhhccCHHHHHHHHhcCCcccccCCCc-ccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence            334444566667888889998887731100 0112345599999997   899999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481          239 ALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  291 (296)
Q Consensus       239 ~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~  291 (296)
                      +..|+.+++++||++|++++.+|..|+||||+|+..|+.+++++|+++|++..
T Consensus       234 ~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~g  286 (301)
T 2b0o_E          234 ALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF  286 (301)
T ss_dssp             HHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999999998753

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.84  E-value=1.3e-20  Score=160.29  Aligned_cols=127  Identities=16%  Similarity=0.120  Sum_probs=110.5

Q ss_pred             ccCCCCCCCCcCcccccCCCC----CCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHH
Q 022481          162 TARSRGSTSNSNFSSIFNPGQ----VTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHL  237 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~----~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~  237 (296)
                      ...++..+...+++.|+..+.    .++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        12 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   84 (236)
T 1ikn_D           12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQT-------PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL   84 (236)
T ss_dssp             THHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCC-------HHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHH
T ss_pred             hHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            334445567788888888775    56766666655       9999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCC------CCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          238 AALFNRTDIAFILMESGAN------MDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       238 A~~~g~~~iv~~LL~~ga~------~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |+..|+.+++++|+++|++      ++..|..|+||||+|+..|+.+++++|+++|++++.++.
T Consensus        85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  148 (236)
T 1ikn_D           85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP  148 (236)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT
T ss_pred             HHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999986      577888999999999999999999999999999998764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.84  E-value=6.5e-21  Score=170.46  Aligned_cols=134  Identities=16%  Similarity=0.163  Sum_probs=118.0

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccc-----------------------------------------------
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRME-----------------------------------------------  194 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~-----------------------------------------------  194 (296)
                      ...+...+...++++|++.|++++..+..+.+.                                               
T Consensus       128 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  207 (351)
T 3utm_A          128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQ  207 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccC
Confidence            333445567788899999999888776555432                                               


Q ss_pred             cccChHHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHh
Q 022481          195 YEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA  271 (296)
Q Consensus       195 ~~~~~t~Lh~A~~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A  271 (296)
                      ...+.|+||+|+..   +..+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|
T Consensus       208 ~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A  287 (351)
T 3utm_A          208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA  287 (351)
T ss_dssp             TTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            23467899999999   568999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          272 PVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       272 ~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +..|+.+++++|+++|++++++|.
T Consensus       288 ~~~~~~~~v~~Ll~~gad~~~~~~  311 (351)
T 3utm_A          288 ALAGHLQTCRLLLSYGSDPSIISL  311 (351)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHcCcHHHHHHHHHcCCCCCCcCC
Confidence            999999999999999999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.84  E-value=3.3e-21  Score=168.62  Aligned_cols=124  Identities=18%  Similarity=0.195  Sum_probs=82.6

Q ss_pred             cCCCCCCCCcCcccccCCCC-CCCCCCCCCcccc-------------------------------ccChHHHHHHHHcCC
Q 022481          163 ARSRGSTSNSNFSSIFNPGQ-VTNGATDKPRMEY-------------------------------EVNGEGLRDAIKNGD  210 (296)
Q Consensus       163 ~~~~~~~~~~~~~~ll~~g~-~~~~~~~~~~~~~-------------------------------~~~~t~Lh~A~~~g~  210 (296)
                      ..+...+...++++|++.|+ +++..+..+.+..                               ..|.||||+|+..|+
T Consensus       116 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~  195 (276)
T 4hbd_A          116 HYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGR  195 (276)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            33444566677777887776 7776666554411                               124557777777777


Q ss_pred             HHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481          211 AAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  286 (296)
Q Consensus       211 ~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~-~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  286 (296)
                      .++|++||++|+++|.+|..|+||||+|+..|+.+++++||+ +|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       196 ~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          196 VDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            777777777777777777777777777777777777777776 5777777777777777777777777777777665

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.84  E-value=5.2e-21  Score=171.38  Aligned_cols=110  Identities=19%  Similarity=0.219  Sum_probs=97.1

Q ss_pred             cCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 022481          172 SNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFIL  250 (296)
Q Consensus       172 ~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~iv~~L  250 (296)
                      .++++|++.|+++|..+..+.+       |||+|+..|+.+++++|++. |+++|.+|..|+||||+|+..|+.++|++|
T Consensus       220 ~i~~lLl~~gad~n~~d~~g~t-------~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~L  292 (337)
T 4g8k_A          220 AITHLLLDHGADVNVRGERGKT-------PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL  292 (337)
T ss_dssp             HHHHHHHHTTCCTTCCCGGGCC-------HHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3567888999999888766665       99999999999999999975 899999999999999999999999999999


Q ss_pred             HHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCC
Q 022481          251 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST  293 (296)
Q Consensus       251 L~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~  293 (296)
                      |++||++|.+     +|||+|+..|+.++|++||++||++|..
T Consensus       293 l~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          293 CKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             HTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             HHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            9999999864     5999999999999999999999999864

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.84  E-value=1.1e-20  Score=169.36  Aligned_cols=117  Identities=14%  Similarity=0.060  Sum_probs=94.0

Q ss_pred             cCcccccCCCCCCCC-CCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC-------
Q 022481          172 SNFSSIFNPGQVTNG-ATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-------  243 (296)
Q Consensus       172 ~~~~~ll~~g~~~~~-~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~-------  243 (296)
                      .+++.|+..|+++|. .+..+.+       |||+|+..|+.++|++||++|+++|.+|..|+||||+|+..|+       
T Consensus       111 ~~~~~l~~~g~dvn~~~d~~g~T-------pLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~  183 (327)
T 1sw6_A          111 EVNDAFPNTQLNLNIPVDEHGNT-------PLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTF  183 (327)
T ss_dssp             HHHHHCTTSCCCSCSCCSTTCCC-------HHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCH
T ss_pred             HHHHHHHhcCCCcccccCCCCCc-------HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHH
Confidence            446677788888888 6766666       8888888888888888888888888888888888888777554       


Q ss_pred             ----------------------------------HHHHHHHHHCCC----------------------------------
Q 022481          244 ----------------------------------TDIAFILMESGA----------------------------------  255 (296)
Q Consensus       244 ----------------------------------~~iv~~LL~~ga----------------------------------  255 (296)
                                                        .+++++|++.++                                  
T Consensus       184 ~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~  263 (327)
T 1sw6_A          184 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSIL  263 (327)
T ss_dssp             HHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHH
T ss_pred             HHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhH
Confidence                                              445555555432                                  


Q ss_pred             -----------CCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          256 -----------NMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       256 -----------~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                                 ++|.+|..|+||||+|+..|+.++|++|+++|||++++|.
T Consensus       264 ~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~  314 (327)
T 1sw6_A          264 ENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK  314 (327)
T ss_dssp             HHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence                       5788888999999999999999999999999999998875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.83  E-value=1.5e-21  Score=168.47  Aligned_cols=130  Identities=16%  Similarity=0.083  Sum_probs=111.6

Q ss_pred             cccCCCCCCCCcCcccccCCCCCCCCCCCC-------CccccccChHHHHHHHHcCCHHHHHHHHH---cCCCCcccCCC
Q 022481          161 NTARSRGSTSNSNFSSIFNPGQVTNGATDK-------PRMEYEVNGEGLRDAIKNGDAAAVKKLLS---EGVDANFCDKQ  230 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~-------~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~---~gadvn~~d~~  230 (296)
                      ....++..+...++++|++.|++++..+..       .......|.||||+|+..|+.++|++||+   +|+++|.+|..
T Consensus        96 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~  175 (260)
T 3jxi_A           96 ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR  175 (260)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCC
Confidence            344445567788899999999999988731       00111235569999999999999999999   99999999999


Q ss_pred             CCcHHHHHHHcCC---------HHHHHHHHHCCCCC-------CccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCC
Q 022481          231 GMSLLHLAALFNR---------TDIAFILMESGANM-------DCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV  290 (296)
Q Consensus       231 g~TpLh~A~~~g~---------~~iv~~LL~~ga~~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi  290 (296)
                      |+||||+|+..++         .+++++|+++|+++       +.+|..|+||||+|+..|+.+++++||++|++.
T Consensus       176 g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             SCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence            9999999999887         79999999999999       779999999999999999999999999998754

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.83  E-value=1.2e-21  Score=177.41  Aligned_cols=120  Identities=17%  Similarity=0.217  Sum_probs=111.3

Q ss_pred             CCCCC--CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCC-----CcccCCCCCcHHHH
Q 022481          165 SRGST--SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVD-----ANFCDKQGMSLLHL  237 (296)
Q Consensus       165 ~~~~~--~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gad-----vn~~d~~g~TpLh~  237 (296)
                      ++..+  ...++++|++.|++++..+..+.+       |||+|+..|+.++|++||++|++     +|..|..|+||||+
T Consensus       145 A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t-------~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~  217 (364)
T 3ljn_A          145 CVGLGPEYLEMIKILVQLGASPTAKDKADET-------PLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHW  217 (364)
T ss_dssp             HHHSCGGGHHHHHHHHHHTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHH
T ss_pred             HHHcCCchHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHH
Confidence            33445  678899999999999998877776       99999999999999999999998     99999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481          238 AALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  291 (296)
Q Consensus       238 A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~  291 (296)
                      |+..|+.+++++||++|++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       218 A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          218 AILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL  271 (364)
T ss_dssp             HHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchh
Confidence            999999999999999999999999999999999999999999999999998753

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.83  E-value=1.9e-20  Score=158.98  Aligned_cols=125  Identities=17%  Similarity=0.255  Sum_probs=110.2

Q ss_pred             CCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcC
Q 022481          164 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFN  242 (296)
Q Consensus       164 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g-advn~~d~~g~TpLh~A~~~g  242 (296)
                      .+...+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|++.| ++++..|..|.||||+|+..+
T Consensus        50 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  122 (237)
T 3b7b_A           50 EAAENNHLEAVKYLIKAGALVDPKDAEGST-------CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK  122 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCCCCCCTTSCC-------HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHhCCCCCCCCCCCCCc-------HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC
Confidence            334456677888999999888887776666       999999999999999999988 889999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          243 RTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       243 ~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       123 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  175 (237)
T 3b7b_A          123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI  175 (237)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCT
T ss_pred             CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC
Confidence            99999999999999999999999999999999999999999999999988764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.83  E-value=1.3e-20  Score=159.01  Aligned_cols=126  Identities=21%  Similarity=0.178  Sum_probs=110.6

Q ss_pred             cCCCCCCCCcCcccccCCCCCCC--C-CCCCCccccccChHHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCcHHHH
Q 022481          163 ARSRGSTSNSNFSSIFNPGQVTN--G-ATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEG--VDANFCDKQGMSLLHL  237 (296)
Q Consensus       163 ~~~~~~~~~~~~~~ll~~g~~~~--~-~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g--advn~~d~~g~TpLh~  237 (296)
                      ..+...+...+++.|++.|+..+  . .+..+.       ||||+|+..|+.+++++|+++|  ++++..|..|.||||+
T Consensus        41 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~-------t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~  113 (228)
T 2dzn_A           41 HWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW-------TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL  113 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSC-------CHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhccccccccccCCCCCC-------CHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHH
Confidence            33444567788899999984443  3 444444       4999999999999999999998  9999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcC-CCCCCCCC
Q 022481          238 AALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK-NNVGSTTS  295 (296)
Q Consensus       238 A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-adi~~~n~  295 (296)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++| ++++.+|.
T Consensus       114 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~  172 (228)
T 2dzn_A          114 AVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK  172 (228)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCT
T ss_pred             HHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCC
Confidence            99999999999999999999999999999999999999999999999999 99988764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.83  E-value=1.8e-21  Score=167.66  Aligned_cols=130  Identities=16%  Similarity=0.088  Sum_probs=112.5

Q ss_pred             cccCCCCCCCCcCcccccCCCCCCCCCCCCCcccc------ccChHHHHHHHHcCCHHHHHHHHH---cCCCCcccCCCC
Q 022481          161 NTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEY------EVNGEGLRDAIKNGDAAAVKKLLS---EGVDANFCDKQG  231 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~------~~~~t~Lh~A~~~g~~~~v~~Ll~---~gadvn~~d~~g  231 (296)
                      ....+...+...++++|++.|++++..+.......      ..|.||||+|+..|+.+++++|++   +|+++|.+|..|
T Consensus        93 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g  172 (256)
T 2etb_A           93 ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLG  172 (256)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCC
Confidence            34444556778889999999999998876521100      115569999999999999999999   999999999999


Q ss_pred             CcHHHHHHH--cCCHH-------HHHHHHHCCCCC-------CccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCC
Q 022481          232 MSLLHLAAL--FNRTD-------IAFILMESGANM-------DCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNV  290 (296)
Q Consensus       232 ~TpLh~A~~--~g~~~-------iv~~LL~~ga~~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi  290 (296)
                      +||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+++|++.
T Consensus       173 ~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          173 NTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             CCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence            999999999  88888       999999999999       999999999999999999999999999998753

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.83  E-value=1.3e-20  Score=165.44  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=104.4

Q ss_pred             CCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q 022481          166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  245 (296)
Q Consensus       166 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~  245 (296)
                      ...+...++++|++.|++++..+        .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus       133 ~~~~~~~~v~~Ll~~g~~~~~~~--------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~  204 (285)
T 3d9h_A          133 CVSGSWDCVNLLLQHGASVQPES--------DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA  204 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCSC--------TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHH
T ss_pred             HHcCHHHHHHHHHHCCCCCCCCC--------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            33456667788888877776433        2445999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          246 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       246 iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++++|+++|++++. |..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       205 ~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~  253 (285)
T 3d9h_A          205 CVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA  253 (285)
T ss_dssp             HHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            99999999999995 88899999999999999999999999999998875

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=99.83  E-value=1.1e-21  Score=150.20  Aligned_cols=64  Identities=36%  Similarity=0.687  Sum_probs=60.2

Q ss_pred             CCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481            3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   68 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   68 (296)
                      ..|+||.++..|+.|+++|++|+||||||.||+|||+.|+.+++++|..  .+++|||+.||..|+
T Consensus        61 ~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~--~~p~RVC~~C~~~l~  124 (125)
T 1joc_A           61 RKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSS--KKPVRVCDACFNDLQ  124 (125)
T ss_dssp             CCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTC--SSCEEECHHHHHHTT
T ss_pred             CccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCCC--CCCCEeCHHHHHHhc
Confidence            5799999999999999999999999999999999999999999988864  589999999999875

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.83  E-value=9.9e-21  Score=165.55  Aligned_cols=99  Identities=17%  Similarity=0.201  Sum_probs=93.9

Q ss_pred             cChHHHHHHH-----HcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHh
Q 022481          197 VNGEGLRDAI-----KNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA  271 (296)
Q Consensus       197 ~~~t~Lh~A~-----~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A  271 (296)
                      .|.||||+|+     ..++.+++++|++.|.+++..|..|+||||+|+..|+.+++++||++|+++|.+|..|+||||+|
T Consensus       144 ~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A  223 (276)
T 4hbd_A          144 AGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCA  223 (276)
T ss_dssp             TSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence            0568999999     66899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcHHHHHHHHH-cCCCCCCCCC
Q 022481          272 PVTLQYKMRQKMEE-DKNNVGSTTS  295 (296)
Q Consensus       272 ~~~g~~~iv~~Ll~-~gadi~~~n~  295 (296)
                      +..|+.+++++|++ +|++++.+|.
T Consensus       224 ~~~g~~~iv~~Ll~~~gad~~~~d~  248 (276)
T 4hbd_A          224 CEHGHKEIAGLLLAVPSCDISLTDR  248 (276)
T ss_dssp             HHHTCHHHHHHHHTSTTCCTTCCCT
T ss_pred             HHCCCHHHHHHHHhcCCCCCcCcCC
Confidence            99999999999999 8999998875

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.83  E-value=3.5e-21  Score=174.34  Aligned_cols=134  Identities=16%  Similarity=0.139  Sum_probs=111.8

Q ss_pred             ccCCCCCCCCcCcccccCC----CCCCCCCCC----------CCccccccChHHHHHHHHcC--CHHHHHHHHHcCCCCc
Q 022481          162 TARSRGSTSNSNFSSIFNP----GQVTNGATD----------KPRMEYEVNGEGLRDAIKNG--DAAAVKKLLSEGVDAN  225 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~----g~~~~~~~~----------~~~~~~~~~~t~Lh~A~~~g--~~~~v~~Ll~~gadvn  225 (296)
                      ...+...+...++++|++.    |..++....          ........|.||||+|+..|  +.++|++|+++|++++
T Consensus        88 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~  167 (364)
T 3ljn_A           88 IHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT  167 (364)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence            3334445666777888877    555544000          00012224556999999999  9999999999999999


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-----CCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          226 FCDKQGMSLLHLAALFNRTDIAFILMESGAN-----MDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       226 ~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~-----~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      .+|..|+||||+|+..|+.+++++||++|++     ++..|..|+||||+|+..|+.++|++|+++|+|++.+|.
T Consensus       168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~  242 (364)
T 3ljn_A          168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN  242 (364)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999999999999     999999999999999999999999999999999998874

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.83  E-value=2.5e-20  Score=158.42  Aligned_cols=126  Identities=20%  Similarity=0.220  Sum_probs=111.8

Q ss_pred             cCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCCcHHHHH
Q 022481          163 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGV----DANFCDKQGMSLLHLA  238 (296)
Q Consensus       163 ~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~ga----dvn~~d~~g~TpLh~A  238 (296)
                      ..+...+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|++.++    +++..|..|+||||+|
T Consensus        51 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A  123 (241)
T 1k1a_A           51 HLAVITTLPSVVRLLVTAGASPMALDRHGQT-------AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA  123 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHH
Confidence            3344456777889999999998888776666       9999999999999999999887    8888999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCccC-CCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          239 ALFNRTDIAFILMESGANMDCKN-AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       239 ~~~g~~~iv~~LL~~ga~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       124 ~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  181 (241)
T 1k1a_A          124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY  181 (241)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCT
T ss_pred             HHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            99999999999999999999998 7899999999999999999999999999988764

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.83  E-value=3e-20  Score=161.15  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=110.8

Q ss_pred             CCCCCcCcccccCCCCCCCCC-CCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q 022481          167 GSTSNSNFSSIFNPGQVTNGA-TDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  245 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~~~~~~-~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~  245 (296)
                      ..+....++.|++.|.+++.. +..+.       ||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+
T Consensus        14 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~-------t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   86 (285)
T 1wdy_A           14 QNEDVDLVQQLLEGGANVNFQEEEGGW-------TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK   86 (285)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTTCC-------CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HcCCHHHHHHHHHcCCCcccccCCCCC-------cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHH
Confidence            345667789999999988876 44444       4999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCC
Q 022481          246 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST  293 (296)
Q Consensus       246 iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~  293 (296)
                      ++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..
T Consensus        87 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  134 (285)
T 1wdy_A           87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR  134 (285)
T ss_dssp             HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccc
Confidence            999999999999999999999999999999999999999999999876

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.83  E-value=1.8e-20  Score=164.49  Aligned_cols=123  Identities=18%  Similarity=0.154  Sum_probs=80.1

Q ss_pred             CCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481          164 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  243 (296)
Q Consensus       164 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~  243 (296)
                      .++..+...+++.|+..|.+++..+..+.+       |||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+
T Consensus        65 ~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~  137 (285)
T 3d9h_A           65 EAAIHGHQLSLRNLISQGWAVNIITADHVS-------PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS  137 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCEECTTCCC-------HHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCC-------HHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCH
Confidence            334445566677777777776666655554       7777777777777777777777777777777777777776666


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      .+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       138 ~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d  187 (285)
T 3d9h_A          138 WDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKI  187 (285)
T ss_dssp             HHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCB
T ss_pred             HHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            666666666666665433 36666666666666666666666666665554

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1

Probab=99.83  E-value=3.7e-21  Score=137.91  Aligned_cols=64  Identities=28%  Similarity=0.648  Sum_probs=59.1

Q ss_pred             CccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccCC
Q 022481            8 FQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGK   72 (296)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~   72 (296)
                      .+++..|+.|+++|++|+||||||.||+|||..|+.+++++|.++ .+++|||+.||..+.....
T Consensus         6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g-~~~~RVC~~C~~~l~~~~~   69 (88)
T 1wfk_A            6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG-NTQQKVCKQCHTILTRGSS   69 (88)
T ss_dssp             CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT-SEEEEECHHHHHHHHHCCC
T ss_pred             CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccC-CCcCEECHHHHHHHHhccc
Confidence            567889999999999999999999999999999999999999987 5899999999999987644

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.82  E-value=3e-20  Score=152.38  Aligned_cols=116  Identities=21%  Similarity=0.312  Sum_probs=102.5

Q ss_pred             cCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHc
Q 022481          163 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALF  241 (296)
Q Consensus       163 ~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~  241 (296)
                      ..+...+....++.|+. |.+++..+..+.+       |||+|+..|+.+++++|+++|+++|.+| ..|+||||+|+..
T Consensus        49 ~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t-------~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           49 WTAARKADEQALSQLLE-DRDVDAVDENGRT-------ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHTTCHHHHHHHTT-TSCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHh-cCCCCCcCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            33444566778899999 9999988877776       9999999999999999999999999998 8899999999999


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhc----------------CcHHHHHHHHHc
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVT----------------LQYKMRQKMEED  286 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~----------------g~~~iv~~Ll~~  286 (296)
                      |+.+++++|+++|++++.+|..|+||||+|+..                |+.+++++|.++
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            999999999999999999999999999998764                567777777664

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=1.4e-20  Score=161.73  Aligned_cols=120  Identities=20%  Similarity=0.281  Sum_probs=107.6

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHH
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAAL  240 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~  240 (296)
                      ...++..+...+++.|+. |++++..+..+.+       |||+|+..|+.++|++||++|+++|.+| ..|+||||+|+.
T Consensus        49 L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t-------~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           49 WWTAARKADEQALSQLLE-DRDVDAVDENGRT-------ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCB-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCC-------HHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            344455677788999999 9999988877766       9999999999999999999999999998 889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhh----------------hcCcHHHHHHHHHcCCC
Q 022481          241 FNRTDIAFILMESGANMDCKNAQGESPLDCAP----------------VTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       241 ~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~----------------~~g~~~iv~~Ll~~gad  289 (296)
                      .|+.+++++||++|++++.+|..|+||||+|+                ..|+.+++++|++++.+
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            99999999999999999999999999999987                56889999999986543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.82  E-value=1e-20  Score=166.19  Aligned_cols=119  Identities=15%  Similarity=0.107  Sum_probs=88.0

Q ss_pred             CCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481          164 RSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  243 (296)
Q Consensus       164 ~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~  243 (296)
                      .++..+...++++|++.|++++..+  +       .||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus        37 ~A~~~g~~~~v~~Ll~~g~~~~~~~--g-------~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~  107 (285)
T 3kea_A           37 YAIADNNVRLVCTLLNAGALKNLLE--N-------EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGN  107 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTGGGSCCT--T-------CCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCC--C-------CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence            3344456666777777777776653  2       347777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHCCCCCCccCCCC-CCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481          244 TDIAFILMESGANMDCKNAQG-ESPLDCAPVTLQYKMRQKMEEDKNNVG  291 (296)
Q Consensus       244 ~~iv~~LL~~ga~~~~~d~~g-~TpL~~A~~~g~~~iv~~Ll~~gadi~  291 (296)
                      .+++++|+++|++++..|..| .||||+|+..|+.+++++|+++|+++.
T Consensus       108 ~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~  156 (285)
T 3kea_A          108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF  156 (285)
T ss_dssp             HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Confidence            777777777777777777777 677777777777777777777777663

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.81  E-value=8.7e-21  Score=166.63  Aligned_cols=125  Identities=14%  Similarity=0.064  Sum_probs=75.7

Q ss_pred             cccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC-CcHHHHHH
Q 022481          161 NTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG-MSLLHLAA  239 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g-~TpLh~A~  239 (296)
                      +...++..+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..| .||||+|+
T Consensus        65 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t-------~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~  137 (285)
T 3kea_A           65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNT-------ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV  137 (285)
T ss_dssp             HHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCc-------HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Confidence            344455566777888888888888877766665       7777777777777777777777777777666 46666665


Q ss_pred             HcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCC
Q 022481          240 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGST  293 (296)
Q Consensus       240 ~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~  293 (296)
                      ..|+.+++++|+++|+++... ..|+||||+|+..|+.+++++|+++|++++.+
T Consensus       138 ~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~  190 (285)
T 3kea_A          138 MLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTN  190 (285)
T ss_dssp             HTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTT
T ss_pred             HcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcc
Confidence            555555555555554443211 13444444444444444444444444444433

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.81  E-value=1.7e-20  Score=163.19  Aligned_cols=133  Identities=19%  Similarity=0.240  Sum_probs=107.7

Q ss_pred             ccccCCCCCCCCcCcccccC----CCCCCCCCCCCCccccccChHHHHHHHHc---CCHHHHHHHHHcCCCC-------c
Q 022481          160 ENTARSRGSTSNSNFSSIFN----PGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDA-------N  225 (296)
Q Consensus       160 ~~~~~~~~~~~~~~~~~ll~----~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~gadv-------n  225 (296)
                      +....++..+....++.|++    .+..++...   ......|.||||+|+..   |+.++|++||++|+++       |
T Consensus        15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~   91 (273)
T 2pnn_A           15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE---FKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN   91 (273)
T ss_dssp             HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG---GSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc---cccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhh
Confidence            34445556678888888886    444443210   01112345599999987   9999999999998652       3


Q ss_pred             c----cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCC--------------CCCCHhhHhhhcCcHHHHHHHHH--
Q 022481          226 F----CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNA--------------QGESPLDCAPVTLQYKMRQKMEE--  285 (296)
Q Consensus       226 ~----~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~--------------~g~TpL~~A~~~g~~~iv~~Ll~--  285 (296)
                      .    .|..|+||||+|+..|+.+++++||++|++++..+.              .|+||||+|+..|+.+++++|++  
T Consensus        92 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  171 (273)
T 2pnn_A           92 ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS  171 (273)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            2    567899999999999999999999999999999997              79999999999999999999999  


Q ss_pred             -cCCCCCCCCC
Q 022481          286 -DKNNVGSTTS  295 (296)
Q Consensus       286 -~gadi~~~n~  295 (296)
                       +|++++.+|.
T Consensus       172 ~~gad~~~~d~  182 (273)
T 2pnn_A          172 WQPADISARDS  182 (273)
T ss_dssp             SCCCCTTCCCT
T ss_pred             cCCCCceeeCC
Confidence             9999998875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.81  E-value=4e-20  Score=165.62  Aligned_cols=124  Identities=18%  Similarity=0.187  Sum_probs=110.3

Q ss_pred             CCCCCCCCcCcccccC-CCCCCCCCCCCCccccccChHHHHHHHHcCC----HHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 022481          164 RSRGSTSNSNFSSIFN-PGQVTNGATDKPRMEYEVNGEGLRDAIKNGD----AAAVKKLLSEGVDANFCDKQGMSLLHLA  238 (296)
Q Consensus       164 ~~~~~~~~~~~~~ll~-~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~----~~~v~~Ll~~gadvn~~d~~g~TpLh~A  238 (296)
                      .++..+...++++||. .|++++..+..+.+       +||+++..+.    ..++++|+++|+++|.+|..|+||||+|
T Consensus       174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t-------~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a  246 (337)
T 4g8k_A          174 DAAEKGHVEVLKILLDEMGADVNACDNMGRN-------ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA  246 (337)
T ss_dssp             HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCC-------HHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred             HHHHCCCHHHHHHHHhccCCCcCccCCCCCc-------HHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            3344566778888885 69999998887777       8988876543    3588999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHC-CCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          239 ALFNRTDIAFILMES-GANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       239 ~~~g~~~iv~~LL~~-ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      +..|+.+++++|++. |+++|.+|.+|+||||+|+..|+.++|++||++|||+|.+|
T Consensus       247 ~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~  303 (337)
T 4g8k_A          247 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  303 (337)
T ss_dssp             HHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred             HHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            999999999999986 89999999999999999999999999999999999999876

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.81  E-value=4.6e-20  Score=170.83  Aligned_cols=124  Identities=23%  Similarity=0.291  Sum_probs=112.2

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      +...+...+++.|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.
T Consensus       219 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~  291 (437)
T 1n11_A          219 AAKQNQVEVARSLLQYGGSANAESVQGVT-------PLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHV  291 (437)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCC-------HHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCC-------HHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            33445667788888888888877766665       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +++++|+++|++++..|..|+||||+|+..|+.++|++|+++|+++|.+|.
T Consensus       292 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~  342 (437)
T 1n11_A          292 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK  342 (437)
T ss_dssp             HHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999998874

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.80  E-value=6e-20  Score=167.30  Aligned_cols=98  Identities=19%  Similarity=0.250  Sum_probs=79.4

Q ss_pred             ChHHHHHHHHcC---CHHHHHHHHHcCCCCcc--------cCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCC
Q 022481          198 NGEGLRDAIKNG---DAAAVKKLLSEGVDANF--------CDKQGMSLLHLAALFNRTDIAFILMESG-ANMDCKNAQGE  265 (296)
Q Consensus       198 ~~t~Lh~A~~~g---~~~~v~~Ll~~gadvn~--------~d~~g~TpLh~A~~~g~~~iv~~LL~~g-a~~~~~d~~g~  265 (296)
                      |.||||+|+..+   +.+++++|+++|++++.        .|..|+||||+|+..|+.+++++||++| ++++.+|..|+
T Consensus       235 g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~  314 (373)
T 2fo1_E          235 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK  314 (373)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCC
T ss_pred             CCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCC
Confidence            344888888877   77888888888888775        5667888888888888888888888775 88888888888


Q ss_pred             CHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          266 SPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       266 TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ||||+|+..|+.++|++|+++|++++.+|.
T Consensus       315 TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~  344 (373)
T 2fo1_E          315 TPIMLAAQEGRIEVVMYLIQQGASVEAVDA  344 (373)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccCCCC
Confidence            888888888888888888888888887764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.80  E-value=1.9e-19  Score=152.27  Aligned_cols=126  Identities=15%  Similarity=0.087  Sum_probs=103.4

Q ss_pred             cCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHc
Q 022481          163 ARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD-KQGMSLLHLAALF  241 (296)
Q Consensus       163 ~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d-~~g~TpLh~A~~~  241 (296)
                      ..+...+....++.|++.|.+++..+..+.+       +||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..
T Consensus        14 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-------~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   86 (240)
T 3eu9_A           14 VKATQYGIYERCRELVEAGYDVRQPDKENVT-------LLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ   86 (240)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHcCCCcCCCCCCCCC-------HHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence            3344556677788888888888877766665       8888888888888888888888887555 4488888888888


Q ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          242 NRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       242 g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus        87 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  140 (240)
T 3eu9_A           87 GHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ  140 (240)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCC
Confidence            888888888888888888888888888888888888888888888888887653

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=1.9e-19  Score=163.78  Aligned_cols=98  Identities=20%  Similarity=0.262  Sum_probs=94.4

Q ss_pred             ChHHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhc
Q 022481          198 NGEGLRDAIKN-GDAAAVKKLLSEGVDANFCD--KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVT  274 (296)
Q Consensus       198 ~~t~Lh~A~~~-g~~~~v~~Ll~~gadvn~~d--~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~  274 (296)
                      +.|+||+|+.. |+++++++||++|+++|..+  ..|.||||+|+..|+.+++++||++|+++|..|..|+||||+|+..
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            45699999999 99999999999999999998  8999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHcCCCCCCCCC
Q 022481          275 LQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       275 g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |+.+++++||++|++++++|.
T Consensus       279 g~~~~v~~LL~~Gad~~~~d~  299 (368)
T 3jue_A          279 GHTGLACLFLKRGADLGARDS  299 (368)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT
T ss_pred             CcHHHHHHHHHCcCCCCCcCC
Confidence            999999999999999998875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.79  E-value=1.6e-19  Score=152.88  Aligned_cols=121  Identities=17%  Similarity=0.178  Sum_probs=93.1

Q ss_pred             CCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC-HH
Q 022481          167 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR-TD  245 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~-~~  245 (296)
                      ..+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++..|..|.||||+|+..++ .+
T Consensus        85 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t-------~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           85 RQGHLSMVVQLMKYGADPSLIDGEGCS-------CIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence            345566777888888887777666655       8888888888888888888888888888788888888775555 67


Q ss_pred             HHHHHHHCCCCCCccCC-CCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          246 IAFILMESGANMDCKNA-QGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       246 iv~~LL~~ga~~~~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      ++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  207 (240)
T 3eu9_A          158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQN  207 (240)
T ss_dssp             THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBC
T ss_pred             HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            77777777888777776 77788888888888888888888888877665

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.79  E-value=2.6e-19  Score=163.04  Aligned_cols=125  Identities=17%  Similarity=0.138  Sum_probs=114.3

Q ss_pred             cccCCCCCCCCcCccccc--------CCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 022481          161 NTARSRGSTSNSNFSSIF--------NPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGM  232 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll--------~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~  232 (296)
                      .+.-++..+...+++.|+        ..|+++|..+..+.+       |||+|+..|+.++|++|+++|++++..|..|.
T Consensus       128 ~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~T-------pL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~  200 (373)
T 2fo1_E          128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT-------PLMLAVLARRRRLVAYLMKAGADPTIYNKSER  200 (373)
T ss_dssp             HHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC-------HHHHHHHcChHHHHHHHHHCCCCCcccCCCCC
Confidence            344455567777888776        789999998887776       99999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHCC---CCCCccCCCCCCHhhHhhhcC---cHHHHHHHHHcCCCCCC
Q 022481          233 SLLHLAALFNRTDIAFILMESG---ANMDCKNAQGESPLDCAPVTL---QYKMRQKMEEDKNNVGS  292 (296)
Q Consensus       233 TpLh~A~~~g~~~iv~~LL~~g---a~~~~~d~~g~TpL~~A~~~g---~~~iv~~Ll~~gadi~~  292 (296)
                      ||||+|+..|+.+++++|+++|   ++++..|..|.||||+|+..+   +.+++++|+++|++++.
T Consensus       201 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~  266 (373)
T 2fo1_E          201 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY  266 (373)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred             CHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence            9999999999999999999998   899999999999999999988   89999999999999986

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.78  E-value=7.7e-19  Score=166.00  Aligned_cols=96  Identities=23%  Similarity=0.275  Sum_probs=92.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCccc------CCCCCcHHHHHHH---cCCHHHHHHHHHCCCCCCccCCCCCCHhhH
Q 022481          200 EGLRDAIKNGDAAAVKKLLSEGVDANFC------DKQGMSLLHLAAL---FNRTDIAFILMESGANMDCKNAQGESPLDC  270 (296)
Q Consensus       200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~------d~~g~TpLh~A~~---~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~  270 (296)
                      +.||.|+..|+.+.|+.||+.|+++|..      |..|+||||+|+.   .|+.+++++||++|+++|.+|.+|+||||+
T Consensus       134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~  213 (497)
T 3lvq_E          134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  213 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence            4899999999999999999999999988      8899999999966   899999999999999999999999999999


Q ss_pred             hhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          271 APVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       271 A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |+..|+.++|++||++|||++++|+
T Consensus       214 A~~~g~~~~v~~Ll~~ga~~~~~d~  238 (497)
T 3lvq_E          214 AALYNQPDCLKLLLKGRALVGTVNE  238 (497)
T ss_dssp             HTTTTCHHHHHHHHHTCCCCSCCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            9999999999999999999999875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.78  E-value=9e-19  Score=155.20  Aligned_cols=96  Identities=23%  Similarity=0.297  Sum_probs=92.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcc------cCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHhhH
Q 022481          200 EGLRDAIKNGDAAAVKKLLSEGVDANF------CDKQGMSLLHLAALF---NRTDIAFILMESGANMDCKNAQGESPLDC  270 (296)
Q Consensus       200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~------~d~~g~TpLh~A~~~---g~~~iv~~LL~~ga~~~~~d~~g~TpL~~  270 (296)
                      ++||+|+..|+++.|+.|++.|++++.      .|..|+||||+|+..   ++.+++++||++|+++|.+|..|+||||+
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~  232 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY  232 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence            489999999999999999999999998      689999999999997   89999999999999999999999999999


Q ss_pred             hhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          271 APVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       271 A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |+..|+.+++++||++||+++++|.
T Consensus       233 A~~~g~~~~v~~Ll~~gad~~~~d~  257 (301)
T 2b0o_E          233 AALYNQPDCLKLLLKGRALVGTVNE  257 (301)
T ss_dssp             HHHTTCHHHHHHHHHTTCCCSCCCT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            9999999999999999999999875

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=99.77  E-value=5.5e-20  Score=155.72  Aligned_cols=69  Identities=38%  Similarity=0.928  Sum_probs=61.6

Q ss_pred             CCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481            3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG   71 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~   71 (296)
                      ..|+.|.+...|+.|+++|++|+||||||.||+|||..|+.++.++|.++..+++|||+.||..+++..
T Consensus       156 ~~~p~W~~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~~  224 (226)
T 3zyq_A          156 ERAPDWVDAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKA  224 (226)
T ss_dssp             CCCCCCCCCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC--
T ss_pred             ccccccccCCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhhc
Confidence            346667777899999999999999999999999999999999999999888899999999999997653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.77  E-value=2e-18  Score=151.25  Aligned_cols=97  Identities=20%  Similarity=0.239  Sum_probs=91.3

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCc------ccCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHhh
Q 022481          199 GEGLRDAIKNGDAAAVKKLLSEGVDAN------FCDKQGMSLLHLAALF---NRTDIAFILMESGANMDCKNAQGESPLD  269 (296)
Q Consensus       199 ~t~Lh~A~~~g~~~~v~~Ll~~gadvn------~~d~~g~TpLh~A~~~---g~~~iv~~LL~~ga~~~~~d~~g~TpL~  269 (296)
                      .++|+.|+..|+++.++.|++.|++++      ..|..|+||||+|+..   |+.+++++||++|+++|.+|..|+||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            358999999999999999999999954      4588999999999999   8999999999999999999999999999


Q ss_pred             HhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          270 CAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       270 ~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +|+..|+.+++++|+++|||++.+|.
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~  236 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANE  236 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccC
Confidence            99999999999999999999999875

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=99.76  E-value=1.3e-19  Score=153.22  Aligned_cols=64  Identities=36%  Similarity=0.860  Sum_probs=58.5

Q ss_pred             CCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481            3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   69 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   69 (296)
                      ..|.+   ...|+.|+++|++|+||||||.||+|||+.|+.++.++|.++..+++|||+.||..+++
T Consensus       156 ~~W~~---~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~l~~  219 (220)
T 1dvp_A          156 PNWAD---GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR  219 (220)
T ss_dssp             CCCCC---CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             ccCCC---CCccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHHHhc
Confidence            45655   47999999999999999999999999999999999999998888999999999998864

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1

Probab=99.75  E-value=1e-19  Score=136.97  Aligned_cols=61  Identities=23%  Similarity=0.457  Sum_probs=44.7

Q ss_pred             CCCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481            2 SIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   70 (296)
Q Consensus         2 ~~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   70 (296)
                      +.-|+||.++..|+.|+++|++++||||||.||+|||+.|+.++++        ++|||+.||..+...
T Consensus        10 ~~~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~--------~vRVC~~C~~~~~~~   70 (120)
T 1y02_A           10 SSFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN--------GPRLCLLCQRFRATA   70 (120)
T ss_dssp             ----------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------------CCEEHHHHHHHHTT
T ss_pred             ccCCcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC--------CceECHHHHHHHhcc
Confidence            4569999999999999999999999999999999999999998764        499999999987644

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.69  E-value=5.5e-18  Score=151.62  Aligned_cols=127  Identities=13%  Similarity=0.062  Sum_probs=101.2

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCcccccc---------------ChHHH-----------------------HHHHHcCC
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEV---------------NGEGL-----------------------RDAIKNGD  210 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~---------------~~t~L-----------------------h~A~~~g~  210 (296)
                      ...+++++|++.|++++..+..+.+....               +.+++                       |+|+..+.
T Consensus        30 ~~~dlv~~ll~~ga~i~~~~~~g~~~~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~  109 (327)
T 1sw6_A           30 FTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLL  109 (327)
T ss_dssp             CCTTCCCSTTTSSCCCEECBCCCCCCCHHHHHHHHHHHHHHHC-------------------------------CHHHHH
T ss_pred             hcCchHHHHhhCCcccccCCCCCCcccCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhH
Confidence            44567888999999888877766654331               11222                       44555556


Q ss_pred             HHHHHHHHHcCCCCcc-cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc---HHHHHHHHHc
Q 022481          211 AAAVKKLLSEGVDANF-CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ---YKMRQKMEED  286 (296)
Q Consensus       211 ~~~v~~Ll~~gadvn~-~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~---~~iv~~Ll~~  286 (296)
                      .+++++|++.|+++|. +|..|+||||+|+..|+.++|++||++|++++.+|..|+||||+|+..|+   .++++.|+++
T Consensus       110 ~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~  189 (327)
T 1sw6_A          110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY  189 (327)
T ss_dssp             HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHh
Confidence            6788888899999999 89999999999999999999999999999999999999999999999998   6888888887


Q ss_pred             C-CCCCCCCC
Q 022481          287 K-NNVGSTTS  295 (296)
Q Consensus       287 g-adi~~~n~  295 (296)
                      + ++++.+|.
T Consensus       190 ~~~~~~~~d~  199 (327)
T 1sw6_A          190 LYPCLILEDS  199 (327)
T ss_dssp             HGGGGGEECT
T ss_pred             hhccccCCCC
Confidence            6 66766553

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.67  E-value=2.2e-17  Score=124.52  Aligned_cols=95  Identities=25%  Similarity=0.305  Sum_probs=85.7

Q ss_pred             CCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 022481          167 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  246 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i  246 (296)
                      ..+...+++.|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.++
T Consensus        18 ~~~~~~~~~~Ll~~g~~~~~~d~~g~t-------~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~   90 (115)
T 2l6b_A           18 KNGHAEEVKKLLSKGADVNARSKDGNT-------PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEI   90 (115)
T ss_dssp             HHTCHHHHHHHTTTTCCSSCCCSSSCC-------TTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCC-------HHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHH
Confidence            345667789999999999988877766       9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCccCCCCCCHh
Q 022481          247 AFILMESGANMDCKNAQGESPL  268 (296)
Q Consensus       247 v~~LL~~ga~~~~~d~~g~TpL  268 (296)
                      +++|+++|+++|..+..|.||-
T Consensus        91 ~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           91 VKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.66  E-value=1.3e-16  Score=115.84  Aligned_cols=82  Identities=32%  Similarity=0.392  Sum_probs=76.1

Q ss_pred             CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481          168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv  247 (296)
                      .+...++++|++.|++++..+..+.+       |||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        12 ~~~~~~v~~Ll~~g~~~n~~d~~g~t-------~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~   84 (93)
T 1n0q_A           12 NGHLEVVKLLLEAGADVNAKDKNGRT-------PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV   84 (93)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCC-------HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Confidence            34566788999999999998887776       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCC
Q 022481          248 FILMESGAN  256 (296)
Q Consensus       248 ~~LL~~ga~  256 (296)
                      ++|+++||+
T Consensus        85 ~~Ll~~ga~   93 (93)
T 1n0q_A           85 KLLLEAGAY   93 (93)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHcCCC
Confidence            999999985

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.64  E-value=6.5e-18  Score=154.08  Aligned_cols=123  Identities=11%  Similarity=-0.042  Sum_probs=97.6

Q ss_pred             cccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCcHHHH
Q 022481          161 NTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDA---NFCDKQGMSLLHL  237 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadv---n~~d~~g~TpLh~  237 (296)
                      ....++..+...++++|++.|+.....+.    ....+.||||+|+..|+.++|++|+++|+++   +..+.+ +||||+
T Consensus        95 ~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~----~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           95 ICFVAAITGCSSALDTLCLLLTSDEIVKV----IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             HHHHHHHHCCHHHHHHHTTC--CCSSCC------CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCcHHHHHH----hccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            34445566788889999999873322211    1124567999999999999999999999763   333333 899999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCc--cCCCCCCHhhHhh-hcCcHHHHHHHHHcCC
Q 022481          238 AALFNRTDIAFILMESGANMDC--KNAQGESPLDCAP-VTLQYKMRQKMEEDKN  288 (296)
Q Consensus       238 A~~~g~~~iv~~LL~~ga~~~~--~d~~g~TpL~~A~-~~g~~~iv~~Ll~~ga  288 (296)
                      |+..|+.+++++|+++|++++.  .|..|.||||+|+ ..|+.++|++|+++|+
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence            9999999999999999999988  8889999999999 9999999999998765

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=99.60  E-value=6.5e-17  Score=150.29  Aligned_cols=67  Identities=27%  Similarity=0.665  Sum_probs=0.0

Q ss_pred             CCCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481            3 IEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   70 (296)
Q Consensus         3 ~~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   70 (296)
                      ..|.||.++..|+.|+++|++++||||||.||++||..|+.+++++|..+ .+++|||+.||..+.++
T Consensus       367 p~w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~-~~~~rvC~~C~~~l~~~  433 (434)
T 3mpx_A          367 PTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLK-DRMAKVCDGCFGELKKR  433 (434)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             CcCCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCC-CCcCEecHHHHHHHHhC
Confidence            46999999999999999999999999999999999999999999987544 68999999999998654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.58  E-value=2.6e-16  Score=143.42  Aligned_cols=93  Identities=12%  Similarity=-0.027  Sum_probs=77.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CccCCCCCCHhhHhh
Q 022481          199 GEGLRDAIKNGDAAAVKKLLSEGVDA---NFCDKQGMSLLHLAALFNRTDIAFILMESGANM---DCKNAQGESPLDCAP  272 (296)
Q Consensus       199 ~t~Lh~A~~~g~~~~v~~Ll~~gadv---n~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~---~~~d~~g~TpL~~A~  272 (296)
                      .||||+|+..|+.++|++|+++|+..   +..+..|.||||+|+.+|+.++|++|+++|+++   +..+.+ +||||+|+
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence            47999999999999999999998832   234556889999999999999999999999862   333333 99999999


Q ss_pred             hcCcHHHHHHHHHcCCCCCC
Q 022481          273 VTLQYKMRQKMEEDKNNVGS  292 (296)
Q Consensus       273 ~~g~~~iv~~Ll~~gadi~~  292 (296)
                      ..|+.++|++|+++|++++.
T Consensus       172 ~~G~~eiv~~Ll~~ga~~~~  191 (376)
T 2aja_A          172 ENGHLHVLNRLCELAPTEAT  191 (376)
T ss_dssp             HTTCHHHHHHHHHSCGGGHH
T ss_pred             HCCCHHHHHHHHHcCCccch
Confidence            99999999999999998653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.57  E-value=4.2e-15  Score=111.43  Aligned_cols=72  Identities=22%  Similarity=0.228  Sum_probs=65.1

Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          224 ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       224 vn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +...|.+|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   88 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK   88 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence            344678999999999999999999999999999999999999999999999999999999999999998874

>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1

Probab=96.92  E-value=0.00036  Score=53.34  Aligned_cols=54  Identities=17%  Similarity=0.425  Sum_probs=43.7

Q ss_pred             cccccccccccccc-cccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhh
Q 022481           10 EATRCDVCKCSFNT-FRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   67 (296)
Q Consensus        10 ~~~~C~~C~~~f~~-~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   67 (296)
                      ....|..|+++|++ +.+.+.|..|..-||.+|....    ..+......+|..|+...
T Consensus        54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~----~~~~~~~~W~C~vC~k~r  108 (134)
T 1zbd_B           54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET----SNNRPHPVWLCKICLEQR  108 (134)
T ss_dssp             SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC----CCSSSSCCEEEHHHHHHH
T ss_pred             CCccccccCCCcccccCCCCCCCCCCcccccccCCcc----CCCCCccceechhhHHHH
Confidence            46789999999984 5799999999999999997542    122356789999999763

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}

Probab=96.64  E-value=0.00065  Score=53.09  Aligned_cols=50  Identities=22%  Similarity=0.569  Sum_probs=42.1

Q ss_pred             ccccccccccccccc-ccccccccccceEcCCCCCCceecCCCCCCCceeccccchhh
Q 022481           10 EATRCDVCKCSFNTF-RRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNS   66 (296)
Q Consensus        10 ~~~~C~~C~~~f~~~-~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~   66 (296)
                      ....|..|+++|+++ ++.+-|..|..-||..|...   ++    .....+|..|+..
T Consensus        67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~~----~~~~W~C~vC~k~  117 (153)
T 2zet_C           67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---HP----EEQGWLCDPCHLA  117 (153)
T ss_dssp             GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---CS----SSSSCEEHHHHHH
T ss_pred             CCccchhhcCccccccCCCCcCCCCCchhhcccccc---cC----CCCcEeeHHHHHH
Confidence            468999999999964 89999999999999999842   22    3578999999975

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=96.28  E-value=0.0035  Score=43.29  Aligned_cols=31  Identities=26%  Similarity=0.686  Sum_probs=25.8

Q ss_pred             ccccccccccccccccccccccccccceEcCCC
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEH   41 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c   41 (296)
                      .....|..|+++.+++ -..+|| ||.+||..+
T Consensus        23 ~~~~rC~~C~kkvgl~-~~f~Cr-Cg~~FC~~H   53 (85)
T 1wff_A           23 KIMKHCFLCGKKTGLA-TSFECR-CGNNFCASH   53 (85)
T ss_dssp             CCCCBCSSSCCBCSSS-SCEECT-TCCEECTTT
T ss_pred             ccCccchhhCCeeccc-CCeEcC-CCCEecccC
Confidence            3568999999998886 359998 999998765

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=96.21  E-value=0.0038  Score=40.65  Aligned_cols=33  Identities=36%  Similarity=0.819  Sum_probs=27.2

Q ss_pred             CCCccccccccccccccccccccccccccceEcCCC
Q 022481            6 PAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEH   41 (296)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c   41 (296)
                      ++......|..|.++.+++  ...|| ||.+||..+
T Consensus        10 ~~k~~~~rC~~C~kkvgl~--~f~Cr-Cg~~FC~~H   42 (64)
T 1wfh_A           10 SPPQRPNRCTVCRKRVGLT--GFMCR-CGTTFCGSH   42 (64)
T ss_dssp             CCCSSCCCCTTTCCCCCTT--CEECS-SSCEECTTT
T ss_pred             CCCCcCCcChhhCCccCcc--CEEee-cCCEecccc
Confidence            4455678999999998887  78995 999998765

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=95.88  E-value=0.0018  Score=61.95  Aligned_cols=41  Identities=24%  Similarity=0.510  Sum_probs=36.5

Q ss_pred             CCCCCccccccccccccc-cccccccccccccceEcCCCCCC
Q 022481            4 EPPAFQEATRCDVCKCSF-NTFRRRHHCRCCGRTLCHEHSSD   44 (296)
Q Consensus         4 ~w~~~~~~~~C~~C~~~f-~~~~r~hhCr~Cg~~~C~~c~~~   44 (296)
                      .|.++.....|+.|++.| +++++.|||+.||.++|..|...
T Consensus       522 ~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~  563 (587)
T 3ky9_A          522 QMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR  563 (587)
T ss_dssp             EEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred             eEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence            466778889999999987 79999999999999999999754

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=95.52  E-value=0.0086  Score=40.11  Aligned_cols=29  Identities=31%  Similarity=0.816  Sum_probs=24.6

Q ss_pred             cccccccccccccccccccccccccceEcCCC
Q 022481           10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEH   41 (296)
Q Consensus        10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c   41 (296)
                      ....|..|+++.+++  ...|| ||.+||..+
T Consensus        24 ~~nRC~~CrKkvgL~--gf~Cr-Cg~~FCs~H   52 (74)
T 1wfl_A           24 KKNRCFMCRKKVGLT--GFDCR-CGNLFCGLH   52 (74)
T ss_dssp             CTTBCSSSCCBCGGG--CEECT-TSCEECSSS
T ss_pred             cCCcChhhCCccccc--CeecC-CCCEechhc
Confidence            456899999998887  48999 999998765

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=95.51  E-value=0.012  Score=39.41  Aligned_cols=30  Identities=37%  Similarity=0.792  Sum_probs=25.6

Q ss_pred             ccccccccccccccccccccccccccceEcCCC
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEH   41 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c   41 (296)
                      .....|..|.++.+++  ...| .||.+||..+
T Consensus        23 ~~~~RC~~C~kkvgL~--~f~C-rCg~~FCs~H   52 (74)
T 1wfp_A           23 STATRCLSCNKKVGVT--GFKC-RCGSTFCGTH   52 (74)
T ss_dssp             CCCCBCSSSCCBCTTT--CEEC-TTSCEECTTT
T ss_pred             ccCccchhhcCccccc--ceEe-ccCCEecccc
Confidence            3578999999999887  7999 5999998765

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=95.33  E-value=0.011  Score=38.52  Aligned_cols=31  Identities=29%  Similarity=0.759  Sum_probs=25.8

Q ss_pred             CccccccccccccccccccccccccccceEcCCC
Q 022481            8 FQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEH   41 (296)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c   41 (296)
                      ......|..|+++.+++  ...| .||.+||..+
T Consensus        12 ~~~~~rC~~C~kkvgl~--~f~C-rCg~~FC~~H   42 (64)
T 1wg2_A           12 VRPNNRCFSCNKKVGVM--GFKC-KCGSTFCGSH   42 (64)
T ss_dssp             SCCSCSCTTTCCCCTTS--CEEC-TTSCEECSSS
T ss_pred             CCcCCcChhhCCccccc--CeEe-ecCCEecccC
Confidence            34567999999998877  7899 6999998765

>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.24  E-value=0.0049  Score=41.66  Aligned_cols=50  Identities=20%  Similarity=0.541  Sum_probs=40.7

Q ss_pred             cccccccccccccc-cccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhh
Q 022481           10 EATRCDVCKCSFNT-FRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   67 (296)
Q Consensus        10 ~~~~C~~C~~~f~~-~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   67 (296)
                      ....|..|+++|++ ++|---|+.|-+-||.+|-...        ......|..|++..
T Consensus        24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~--------~~~~W~C~VC~k~~   74 (76)
T 2csz_A           24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE--------SNGTWRCKVCSGPS   74 (76)
T ss_dssp             CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC--------STTCEEEHHHHSSC
T ss_pred             CccchhhhCccccccccCCCcCcccChhhcccccccC--------CCCCEEEeeCchhh
Confidence            35689999999995 6799999999999999996431        12678999998764

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.72  E-value=0.027  Score=37.04  Aligned_cols=32  Identities=25%  Similarity=0.683  Sum_probs=25.4

Q ss_pred             cccccccccccccccccc-ccccccccceEcCCC
Q 022481            9 QEATRCDVCKCSFNTFRR-RHHCRCCGRTLCHEH   41 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r-~hhCr~Cg~~~C~~c   41 (296)
                      .....|..|+++.++... -..| .||.+||..+
T Consensus        13 ~~~~rC~~C~kk~gL~~~egf~C-rCg~~FC~~H   45 (67)
T 1x4w_A           13 KSRRRCFQCQTKLELVQQELGSC-RCGYVFCMLH   45 (67)
T ss_dssp             SCTTBCSSSCCBCCHHHHHHHCC-SSSCCCCTTT
T ss_pred             ccCCcchhhCCeecccccCceEe-cCCCEehhcc
Confidence            356899999999886532 3789 7999998765

>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2

Probab=92.68  E-value=0.0039  Score=40.18  Aligned_cols=29  Identities=17%  Similarity=0.496  Sum_probs=24.0

Q ss_pred             ccccccccccccccccccccccceEcCCCC
Q 022481           13 RCDVCKCSFNTFRRRHHCRCCGRTLCHEHS   42 (296)
Q Consensus        13 ~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~   42 (296)
                      .|..|+++|... .++.|..|+.+||.+|=
T Consensus        17 ~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD   45 (59)
T 1z60_A           17 FCYGCQGELKDQ-HVYVCAVCQNVFCVDCD   45 (59)
T ss_dssp             EETTTTEECTTS-EEECCTTTTCCBCHHHH
T ss_pred             cccccCcccCCC-ccEECCccCcCcccchh
Confidence            599999999632 24889999999999984

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.92  E-value=0.024  Score=34.25  Aligned_cols=32  Identities=25%  Similarity=0.598  Sum_probs=26.1

Q ss_pred             CCCCccccccccccccccccc--cccccccccceE
Q 022481            5 PPAFQEATRCDVCKCSFNTFR--RRHHCRCCGRTL   37 (296)
Q Consensus         5 w~~~~~~~~C~~C~~~f~~~~--r~hhCr~Cg~~~   37 (296)
                      |+.- .+..|..|++.|+++.  |+|.|..||.++
T Consensus         7 ~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v   40 (49)
T 2e72_A            7 GQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV   40 (49)
T ss_dssp             SCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred             cccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence            4433 6789999999999764  899999999876

>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C

Probab=91.27  E-value=0.13  Score=32.55  Aligned_cols=54  Identities=22%  Similarity=0.551  Sum_probs=40.6

Q ss_pred             Cccccccccccc-cccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhh
Q 022481            8 FQEATRCDVCKC-SFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNS   66 (296)
Q Consensus         8 ~~~~~~C~~C~~-~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~   66 (296)
                      ..+...|.+|.| +|--- --|.|.+|-.-||++|.-+ +.+..   ++-..||.-|.+.
T Consensus         6 ~~d~~~C~iC~KTKFADG-~Gh~C~yCk~r~CaRCGg~-v~lr~---~k~~WvC~lC~k~   60 (62)
T 2a20_A            6 KGDAPTCGICHKTKFADG-CGHNCSYCQTKFCARCGGR-VSLRS---NKVMWVCNLCRKQ   60 (62)
T ss_dssp             SSCCCCCSSSSCSCCCSS-CCEEBTTTCCEECTTSEEE-EESST---TCEEEEEHHHHHH
T ss_pred             cCCcchhhhhccceeccC-CCccccccCCeeecccCCE-eeecC---CeEEEEehhhhhc
Confidence            346789999998 56532 2589999999999999854 44433   5778999999764

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=90.88  E-value=0.13  Score=35.19  Aligned_cols=58  Identities=21%  Similarity=0.472  Sum_probs=43.2

Q ss_pred             cccccccccccccccccccccccce-----EcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481           12 TRCDVCKCSFNTFRRRHHCRCCGRT-----LCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG   71 (296)
Q Consensus        12 ~~C~~C~~~f~~~~r~hhCr~Cg~~-----~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~   71 (296)
                      ..|..|+.....-.+.+||..|+.-     ||.+|-..-..+..=|  .....|..|.+.+++.+
T Consensus         3 ~~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkACG--A~~yFC~~C~~LiSkkr   65 (81)
T 2jrp_A            3 ITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVLKACG--AVDYFCQNGHGLISKKR   65 (81)
T ss_dssp             CCCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCEEEETT--EEEECCTTTTCCCCTTS
T ss_pred             CCCCCCCCccccCCCceECccccccCCCcccCcchhhHHHHHHhcC--CcCeeeccCCCEeecce
Confidence            4688999988877788889999865     7889977655554444  23678888888876653

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=87.54  E-value=0.35  Score=32.48  Aligned_cols=53  Identities=15%  Similarity=0.243  Sum_probs=36.0

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   70 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   70 (296)
                      .+...|.+|...|..-.. ..--.||++||..|...++.        ..+.|-.|...+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~-~~~~~C~H~fc~~Ci~~~~~--------~~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           13 GSGLECPVCKEDYALGES-VRQLPCNHLFHDSCIVPWLE--------QHDSCPVCRKSLTGQ   65 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSC-EEECTTSCEEETTTTHHHHT--------TTCSCTTTCCCCCCS
T ss_pred             CCCCCCeeCCccccCCCC-EEEeCCCCeecHHHHHHHHH--------cCCcCcCcCCccCCc
Confidence            445789999998863221 11125999999999876542        125799998777654

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=86.43  E-value=0.34  Score=29.96  Aligned_cols=51  Identities=22%  Similarity=0.368  Sum_probs=35.1

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhh
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   67 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   67 (296)
                      .+...|.+|...|..-.+......||.+||..|...++..        ...|..|...+
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~   53 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE--------GYRCPLCSGPS   53 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH--------TCCCTTSCCSS
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc--------CCcCCCCCCcC
Confidence            3457899999988654445566679999999998665432        15566665443

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=85.80  E-value=0.26  Score=31.62  Aligned_cols=28  Identities=21%  Similarity=0.607  Sum_probs=21.2

Q ss_pred             cccccccccccccc------------ccccccccccceEc
Q 022481           11 ATRCDVCKCSFNTF------------RRRHHCRCCGRTLC   38 (296)
Q Consensus        11 ~~~C~~C~~~f~~~------------~r~hhCr~Cg~~~C   38 (296)
                      .-.|..|++.|...            .|.+.|..||+.|-
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~   43 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR   43 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred             CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence            45799999999732            26678888888884

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=85.57  E-value=0.45  Score=29.38  Aligned_cols=50  Identities=16%  Similarity=0.345  Sum_probs=33.0

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhh
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNS   66 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~   66 (296)
                      ++...|.+|...|..-..-..-..||.+||..|...+.        +....|..|...
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~--------~~~~~CP~Cr~~   52 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL--------GSHSTCPLCRLT   52 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT--------TTCCSCSSSCCC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH--------HcCCcCcCCCCE
Confidence            35568999999887543333334699999999975542        123457777543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.43  E-value=0.15  Score=33.82  Aligned_cols=52  Identities=17%  Similarity=0.348  Sum_probs=36.1

Q ss_pred             CccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481            8 FQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   70 (296)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   70 (296)
                      ..+...|.+|...|.-   ...-..||++||..|...++..        .+.|-.|...+...
T Consensus        12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           12 LTPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY--------SNRCPKCNIVVHQT   63 (72)
T ss_dssp             CCGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH--------CSSCTTTCCCCCSS
T ss_pred             cCCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc--------CCcCCCcCcccCcc
Confidence            3456789999887753   2333479999999998765422        35788888776544

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=85.42  E-value=0.68  Score=28.97  Aligned_cols=46  Identities=20%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             CccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481            8 FQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   68 (296)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   68 (296)
                      ..+...|.+|...|..-    .--.||++||..|...           ....|..|...+.
T Consensus         3 e~~~~~C~IC~~~~~~p----~~l~CgH~fC~~Ci~~-----------~~~~CP~Cr~~~~   48 (56)
T 1bor_A            3 EFQFLRCQQCQAEAKCP----KLLPCLHTLCSGCLEA-----------SGMQCPICQAPWP   48 (56)
T ss_dssp             SCCCSSCSSSCSSCBCC----SCSTTSCCSBTTTCSS-----------SSSSCSSCCSSSS
T ss_pred             cccCCCceEeCCccCCe----EEcCCCCcccHHHHcc-----------CCCCCCcCCcEee
Confidence            34566799999888632    2235999999999765           2345777766554

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.68  E-value=0.12  Score=34.22  Aligned_cols=52  Identities=19%  Similarity=0.340  Sum_probs=34.9

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   69 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   69 (296)
                      .+...|.+|...|.--.   . -.||++||..|...+...     ......|..|...+..
T Consensus        18 ~~~~~C~IC~~~~~~~~---~-~~CgH~fC~~Ci~~~~~~-----~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDILQKPV---T-IDCGHNFCLKCITQIGET-----SCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSBCSSEE---E-CTTCCEEEHHHHHHHCSS-----SCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcccCCeE---E-cCCCChhhHHHHHHHHHc-----CCCCCCCCCCCCcCCc
Confidence            34568999998876321   1 279999999998665431     1235678888776643

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.51  E-value=0.13  Score=34.34  Aligned_cols=53  Identities=15%  Similarity=0.233  Sum_probs=35.5

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   70 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   70 (296)
                      .+...|.+|...|..-..-.. -.||++||..|...++..        .+.|-.|...+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~-~~C~H~f~~~Ci~~~~~~--------~~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGI-CPCKHAFHRKCLIKWLEV--------RKVCPLCNMPVLQL   65 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEE-ETTTEEEEHHHHHHHHHH--------CSBCTTTCCBCSSC
T ss_pred             CCCCCCcCCCcccCCCCcEEE-cCCCCEecHHHHHHHHHc--------CCcCCCcCcccccc
Confidence            345789999998864332221 159999999998765422        24788887766543

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=84.09  E-value=0.26  Score=33.13  Aligned_cols=56  Identities=21%  Similarity=0.275  Sum_probs=36.8

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   69 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   69 (296)
                      .+...|.+|...|.--..    -.||++||..|...+....... ......|..|...+..
T Consensus        10 ~~~~~C~IC~~~~~~p~~----l~CgH~fC~~Ci~~~~~~~~~~-~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLTEPLS----LDCGHSLCRACITVSNKEAVTS-MGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECSSCCC----CSSSCCCCHHHHSCCCCCCSSS-CCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccCCeeE----CCCCCHHHHHHHHHHHHhcccC-CCCCCcCCCCCCcCCH
Confidence            345689999998863221    2699999999987764432111 1335678888776653

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=83.83  E-value=0.44  Score=33.50  Aligned_cols=58  Identities=21%  Similarity=0.442  Sum_probs=41.0

Q ss_pred             cccccccccccccccccccccccce-----EcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481           12 TRCDVCKCSFNTFRRRHHCRCCGRT-----LCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG   71 (296)
Q Consensus        12 ~~C~~C~~~f~~~~r~hhCr~Cg~~-----~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~   71 (296)
                      ..|..|+.....-.+.+||..|+.-     +|.+|-..-..|..=|  ----.|..|.+.+++.+
T Consensus        33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACG--AvdYFC~~chgLiSKkR   95 (101)
T 2jne_A           33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACG--AVDYFCQHGHGLISKKR   95 (101)
T ss_dssp             CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETT--EEEEEETTTTEEECTTT
T ss_pred             ccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhc--CcchhhccCCceeecce
Confidence            5899999998877788889999875     6888876544443322  13456788888776553

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=83.80  E-value=0.39  Score=33.18  Aligned_cols=28  Identities=32%  Similarity=0.656  Sum_probs=18.2

Q ss_pred             cccccccccccccccc------------cccccccccceE
Q 022481           10 EATRCDVCKCSFNTFR------------RRHHCRCCGRTL   37 (296)
Q Consensus        10 ~~~~C~~C~~~f~~~~------------r~hhCr~Cg~~~   37 (296)
                      +.-.|..|++.|....            |.+.|..||+.|
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F   66 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATF   66 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEE
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEe
Confidence            3457888888887321            445677777666

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.76  E-value=0.21  Score=32.78  Aligned_cols=50  Identities=14%  Similarity=0.322  Sum_probs=36.4

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG   71 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~   71 (296)
                      .+...|.+|...|..     .--.||++||..|...+..        ....|..|...+....
T Consensus        13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~--------~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD--------RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC--------CCSSCHHHHHCTTCCC
T ss_pred             CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH--------CcCcCCCcCCcccCCC
Confidence            456789999988765     3356999999999765422        3567999988776543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=81.54  E-value=0.44  Score=31.71  Aligned_cols=50  Identities=20%  Similarity=0.565  Sum_probs=33.1

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhh
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS   67 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~   67 (296)
                      .+...|.+|...|.-   -..-..||++||..|...+...      ...+.|-.|...+
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~------~~~~~CP~Cr~~~   62 (74)
T 2yur_A           13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLE------SDEHTCPTCHQND   62 (74)
T ss_dssp             CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHH------SSSSCCSSSCCSS
T ss_pred             CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHh------cCCCcCCCCCCcC
Confidence            345689999877753   2333449999999998665432      1235788887643

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=81.24  E-value=0.11  Score=37.25  Aligned_cols=48  Identities=19%  Similarity=0.441  Sum_probs=34.5

Q ss_pred             ccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481           11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   68 (296)
Q Consensus        11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   68 (296)
                      .-.|.+|...|.   .-..|-.||++||..|...++...       ...|..|...+.
T Consensus        22 ~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~Cr~~~~   69 (100)
T 3lrq_A           22 VFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQ-------RAQCPHCRAPLQ   69 (100)
T ss_dssp             HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHT-------CSBCTTTCCBCC
T ss_pred             CCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHC-------cCCCCCCCCcCC
Confidence            457999988775   345567899999999987654321       157888877664

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4

Probab=80.91  E-value=0.93  Score=31.33  Aligned_cols=34  Identities=21%  Similarity=0.459  Sum_probs=25.2

Q ss_pred             cccccccccccccc--cccccccccccceEcCCCCC
Q 022481           10 EATRCDVCKCSFNT--FRRRHHCRCCGRTLCHEHSS   43 (296)
Q Consensus        10 ~~~~C~~C~~~f~~--~~r~hhCr~Cg~~~C~~c~~   43 (296)
                      ....|..|+..|..  ..++..|..||..||..|-.
T Consensus        24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~   59 (86)
T 2ct7_A           24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR   59 (86)
T ss_dssp             CEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred             CEeECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence            34458878876642  24568899999999999975

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=80.50  E-value=0.53  Score=31.27  Aligned_cols=26  Identities=27%  Similarity=0.655  Sum_probs=17.7

Q ss_pred             cccccccccccccc-cccccccccc-eE
Q 022481           12 TRCDVCKCSFNTFR-RRHHCRCCGR-TL   37 (296)
Q Consensus        12 ~~C~~C~~~f~~~~-r~hhCr~Cg~-~~   37 (296)
                      -.|..|+..|.+.. -..+|+.||. |+
T Consensus        29 Y~C~~CG~~~e~~~~d~irCp~CG~RIL   56 (70)
T 1twf_L           29 YICAECSSKLSLSRTDAVRCKDCGHRIL   56 (70)
T ss_dssp             EECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred             EECCCCCCcceeCCCCCccCCCCCceEe
Confidence            36888888887653 3467777776 44

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.47  E-value=0.13  Score=34.05  Aligned_cols=50  Identities=14%  Similarity=0.216  Sum_probs=33.4

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhccc
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRT   70 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~   70 (296)
                      .+...|.+|...|..-   . --.||++||..|...++.        ..+.|-.|...+...
T Consensus        13 ~~~~~C~IC~~~~~~~---~-~~~CgH~fC~~Ci~~~~~--------~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---V-SLPCKHVFCYLCVKGASW--------LGKRCALCRQEIPED   62 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---E-EETTTEEEEHHHHHHCTT--------CSSBCSSSCCBCCHH
T ss_pred             CCCCCCccCCcccCCC---E-EccCCCHHHHHHHHHHHH--------CCCcCcCcCchhCHh
Confidence            4456899998877532   1 126999999999754321        126788887776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1dvpa2	72	g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me	3e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.001
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.004
d1vfya_	67	g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch	5e-15
d1wfka_	88	g.50.1.1 (A:) Zinc finger FYVE domain containing p	5e-13
d1joca1	64	g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens)	9e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.004
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-04
d1y02a2	51	g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.002
d1zbdb_	124	g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat	3e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 72.4 bits (177), Expect = 3e-17
 Identities = 24/69 (34%), Positives = 36/69 (52%)

Query: 1  MSIEPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVC 60
           +   P + +   C  C+  F    R+HHCR CG+  C + ++ Q  LP++GI   VRVC
Sbjct: 3  TADTAPNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVC 62

Query: 61 ADCFNSSSR 69
            CF +  R
Sbjct: 63 DGCFAALQR 71

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 2e-15
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    VK LL  G   N  + +  + LH+AA    T++A  L+++ A ++ K 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 262 AQGESPLDCA 271
              ++PL CA
Sbjct: 64  KDDQTPLHCA 73

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 1e-10
 Identities = 22/82 (26%), Positives = 34/82 (41%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A K G     + LL      N   K G++ LH+A   N  DI  +L+  G +     
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 195

Query: 262 AQGESPLDCAPVTLQYKMRQKM 283
             G +PL  A    Q ++ + +
Sbjct: 196 WNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 8e-09
 Identities = 23/94 (24%), Positives = 36/94 (38%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A + G     K LL      N   K   + LH AA    T++  +L+E+ AN +   
Sbjct: 37  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 96

Query: 262 AQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS 295
             G +PL  A      +    + E + +    T 
Sbjct: 97  TAGHTPLHIAAREGHVETVLALLEKEASQACMTK 130

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 1e-08
 Identities = 26/70 (37%), Positives = 36/70 (51%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G+   VK LL    D N   K G S LH AA    TDI  +L+++GA+ +  +
Sbjct: 301 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 360

Query: 262 AQGESPLDCA 271
           + G +PL  A
Sbjct: 361 SDGTTPLAIA 370

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 2e-07
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL---MESGANMD 258
           L  A + G    V  LL  G   N     G + L +A       +  +L    +  + + 
Sbjct: 334 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 393

Query: 259 CKNAQGES 266
             +    S
Sbjct: 394 VSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 3e-06
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 6/98 (6%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A+ + +   VK LL  G   +     G + LH+AA  N+ ++A  L++ G + + ++
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 228

Query: 262 AQGESPLDCA------PVTLQYKMRQKMEEDKNNVGST 293
            QG +PL  A       +      +Q      N  G T
Sbjct: 229 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 232 MSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           ++ LH+A+      I   L++ GA+ +  N + E+PL  A
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA 40

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 5e-05
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A + G A  V  LLS+  + N  +K G++ LHL A      +A +L++ G  +D   
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 294

Query: 262 AQGESPL------DCAPVTLQYKMRQKMEEDKNNVGST 293
             G +PL          +       Q     K  +G +
Sbjct: 295 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYS 332

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 17/70 (24%), Positives = 31/70 (44%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L    + G       L+  GV  +   + G + LH+A+ +    +   L++  A+++ K 
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 327

Query: 262 AQGESPLDCA 271
             G SPL  A
Sbjct: 328 KLGYSPLHQA 337

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 22/80 (27%), Positives = 32/80 (40%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A K       + LL  G  AN    QG++ LHLAA     ++  +L+   AN +  N
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 261

Query: 262 AQGESPLDCAPVTLQYKMRQ 281
             G +PL          +  
Sbjct: 262 KSGLTPLHLVAQEGHVPVAD 281

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.6 bits (162), Expect = 5e-15
 Identities = 26/66 (39%), Positives = 35/66 (53%)

Query: 8  FQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSS 67
          + ++  C +C   F+   R+HHCR CG   C EHSS+ + LP  GI+  VRVC  CF   
Sbjct: 2  WIDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDY 61

Query: 68 SRTGKD 73
               D
Sbjct: 62 EFIVTD 67

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (149), Expect = 5e-13
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR 69
            +RC  C   F  F++ + C+ CGR  C+   S    +P+ G  T  +VC  C    +R
Sbjct: 8  MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGN-TQQKVCKQCHTILTR 66

Query: 70 TGKDN 74
             DN
Sbjct: 67 GSSDN 71

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 9e-12
 Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 65
          E   C  C   F+   RRHHCR CG   C E S+     P       VRVC  CFN
Sbjct: 7  EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTP--SSKKPVRVCDACFN 60

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.2 bits (139), Expect = 2e-10
 Identities = 21/70 (30%), Positives = 33/70 (47%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A   G    +K L+    D N  D  G + LH AA + + +   IL+E+  +M+  N
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262

Query: 262 AQGESPLDCA 271
             G++  D A
Sbjct: 263 KVGQTAFDVA 272

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 31/129 (24%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 155 KPKKTENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAV 214
           K K+ E   R  GS ++     +            K +++++ +G     A  +GD   V
Sbjct: 7   KQKRNEQLKRWIGSETDLEPPVV---------KRKKTKVKFD-DGAVFLAACSSGDTEEV 56

Query: 215 KKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVT 274
            +LL  G D N+ +  G++ LH A + +  D+   L+E+GAN++  + +G  PL  A   
Sbjct: 57  LRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116

Query: 275 LQYKMRQKM 283
               + + +
Sbjct: 117 GYLDIAEYL 125

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 9/38 (23%), Positives = 14/38 (36%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA 239
           L  A   G   A + L+    D    +K G +   +A 
Sbjct: 236 LHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 6e-10
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 202 LRDAIKNGDAAAVKKLLS-EGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           L  A++      V++LL  E ++ N  D  G + L LA       IA +L + GA+ DC 
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

Query: 261 N 261
           +
Sbjct: 283 D 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 5e-08
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 215 KKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCA 271
             LL  G D N   ++G + L LA       +   L+E     ++  ++ G++ L  A
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-07
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQ-GMSLLHLAALFNRTDIAFILMESGANMDCK 260
           L  A++N D   V++LL  G + NF +++ G + LH A   +R DI  +L+  GA+   +
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 261 NAQGESPLDCAPVTLQYKMRQKMEE 285
              G +P   A +    K+ +    
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLS 93

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 202 LRDAIKNGDAAAVKKLLSE-GVDANFCDKQG----MSLLHLAALFNRTDIAFILMESGAN 256
           L DA + G    +K LL E G D N CD  G    +  L  +   +   I  +L++ GA+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 257 MDCKNAQGESPLDCAP 272
           ++ +  +G++PL  A 
Sbjct: 212 VNVRGERGKTPLILAV 227

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 230 QGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ-GESPLDCA 271
           +   LL  A      D+   L+E GAN++ +  + G +PL  A
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA 46

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.2 bits (134), Expect = 1e-09
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 202 LRDAIKNGDAAAVKKLLSE---GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
             D       + ++ L  +       N  D  G + L++AA      I   L++ GA+  
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286

Query: 259 CKNAQGESPLDCA 271
             N  G  P+D  
Sbjct: 287 IANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (113), Expect = 5e-07
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 4/151 (2%)

Query: 139 PPQMKSSSTTAGQSNPKPKKTENTARSRGSTSNSNFSSIFN---PGQVTNGATDKPRMEY 195
                SS     ++ P P   +N  + +                P  + N ++++     
Sbjct: 11  TSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGG 70

Query: 196 EVNGEGLRDAIKNGDAAAVKKLLSEGVDANF-CDKQGMSLLHLAALFNRTDIAFILMESG 254
             N +    +  +          +  ++ N   D+ G + LH        ++   L++ G
Sbjct: 71  SSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG 130

Query: 255 ANMDCKNAQGESPLDCAPVTLQYKMRQKMEE 285
           +N    +  GES L  A  ++        E 
Sbjct: 131 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 161

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (90), Expect = 3e-04
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 205 AIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAA 239
           A + G+ + V  LL  G D    +K G+  +   A
Sbjct: 266 AARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (120), Expect = 2e-09
 Identities = 13/52 (25%), Positives = 16/52 (30%), Gaps = 8/52 (15%)

Query: 14 CDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN 65
          C  C   F    R+  C  C +  C   SS     P        R+C  C  
Sbjct: 3  CKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGP--------RLCLLCQR 46

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 3e-08
 Identities = 23/83 (27%), Positives = 37/83 (44%)

Query: 189 DKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF 248
           D   ++ +     L  A++N   + V+ LL  G + N     G S LH A+      +  
Sbjct: 135 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 194

Query: 249 ILMESGANMDCKNAQGESPLDCA 271
            L+ SGA+   KN   ++PL  A
Sbjct: 195 TLVRSGADSSLKNCHNDTPLMVA 217

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 11/45 (24%), Positives = 18/45 (40%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI 246
           L  A   G    V+ L+  G D++  +    + L +A      DI
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 231 GMSLLHLAALFNRTDIAFILM----ESGANMDCKNAQGESPLDCAPVTLQYKMRQKM 283
           G + LH+A +         L+    + G  +D  N   ++PL  A +T    + + +
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 59

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 202 LRDAIKNGDAAAVKKLLSE----GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANM 257
           L  A+  G+  AV +L++     G + +  +    + LHLA +     +  +L+ +GA+ 
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 258 DCKNAQGESPLDCAPVTLQYKMRQKM 283
              +  G++    A         + +
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRAL 92

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 6e-08
 Identities = 12/51 (23%), Positives = 26/51 (50%)

Query: 221 GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
           G + +  D+ G + + LAA   R ++   L++ GA+++  +A   +    A
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 7e-08
 Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 3/155 (1%)

Query: 99  DPKVESVVKRHPVSSVLECKCGMPLCICEAPAPAASTETRPPQMKSSSTTAGQSNPKPKK 158
           D  +   +           +                   +    K       + +     
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 178

Query: 159 TENTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEG---LRDAIKNGDAAAVK 215
            +++ + +G T+    + + N   V     +K   + + + +G   +  A + G    V 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 216 KLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 250
            L+ +G      D    +   LA   N  +I  I 
Sbjct: 239 YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.0 bits (110), Expect = 8e-07
 Identities = 13/83 (15%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 209 GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILM--------ESGANMDCK 260
           G  A  + +  E V+     +   ++LH  A  +  + +  L+         +GA+++  
Sbjct: 12  GSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM 70

Query: 261 NAQGESPLDCAPVTLQYKMRQKM 283
           +    +PL  A +  + ++   +
Sbjct: 71  DCDENTPLMLAVLARRRRLVAYL 93

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.3 bits (119), Expect = 1e-07
 Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 5/69 (7%)

Query: 205 AIKNGDAAAVK---KLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           A   G ++A+     LL+          +      LAA      +   L E         
Sbjct: 97  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 156

Query: 262 --AQGESPL 268
             A+     
Sbjct: 157 IQAENYHAF 165

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 198 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFI---LMESG 254
           N E +R  +    A   +       DA+    +   +  +AA+   +        L+ S 
Sbjct: 57  NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD 116

Query: 255 ANMDCKNAQGESPLDCA 271
             +    A+       A
Sbjct: 117 EIVKVIQAENYQAFRLA 133

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.1 bits (90), Expect = 4e-04
 Identities = 11/65 (16%), Positives = 16/65 (24%), Gaps = 2/65 (3%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDK--QGMSLLHLAALFNRTDIAFILMESGANMDC 259
            R A +NG    + +L              +      LAA      +   L E       
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 260 KNAQG 264
              Q 
Sbjct: 190 AMIQA 194

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFC------DKQGMSLLHLAALF---NRTDIAFILME 252
           L +A+K  D   + +  ++GVD           +   + LHLA          I   L++
Sbjct: 10  LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 69

Query: 253 SGANMDCKN 261
           +  N+D + 
Sbjct: 70  NSGNLDKQT 78

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 4/36 (11%), Positives = 12/36 (33%)

Query: 221 GVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 256
                  ++ G + L +A          +L ++ + 
Sbjct: 104 KASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 206 IKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGA 255
           ++   A+ ++ LL  G D       G + L  A L     +A +L   GA
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 9e-07
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 225 NFCDKQGMSLLHLAALFNRTDIAFILMESGAN---MDCKNAQGESPLDCA 271
            +  + G + LHLA +         L+   A    +D +N  G++ L  A
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLA 52

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDA---NFCDKQGMSLLHLAALFNRTDIAFILMESGANMD 258
           L  A+ +     +  LL         +  +  G + LHLAA+         L  +GA + 
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72

Query: 259 CKNAQGESPLDCAP 272
                G + L  A 
Sbjct: 73  VAERGGHTALHLAC 86

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 225 NFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCA 271
                 G + LHLA       +  +L+++GA+   +   G +PL  A
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA 232

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 5/56 (8%)

Query: 10 EATRCDVCKCSFNT-FRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCF 64
             RC +C             C  C + +C +   +            V +C  C 
Sbjct: 47 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE----TSNNRPHPVWLCKICL 98

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 217 LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDC 270
           LL +G   N  ++ G + LH AA  NR +IA +L+E GAN D K+    + +  
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHR 142

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           +  A   G+   +  LL      N  D +G + LHLA    R + A +L+  GA++  +N
Sbjct: 140 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 199

Query: 262 AQGESPLDCA 271
            + ++PL  A
Sbjct: 200 KEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 1/83 (1%)

Query: 202 LRDAIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           + +   +G    +K+ + ++   A   D+   + LH A     T+I   L++ G  ++ K
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 261 NAQGESPLDCAPVTLQYKMRQKM 283
           +  G SPL  A    + ++ + +
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKAL 89

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 9/49 (18%), Positives = 18/49 (36%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 250
           L  A         K L+S+G      +K+  + L +A       +  ++
Sbjct: 173 LHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMV 221

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 8e-06
 Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 202 LRDAIKNGDAAAVKKLL-SEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCK 260
           L  A    +   V++LL S+       D+ G   LH +  F   +I   L+    N++  
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 261 NAQGESPLDCAPVTLQYKMRQKM 283
           +   +S      +       + +
Sbjct: 64  DYPDDSGWTPFHIACSVGNLEVV 86

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 225 NFCDKQGMSLLHLAALFNRTDIAFILMES-GANMDCKNAQGESPLDCA 271
           N+ DKQG + L  A      D A +L+E  GA  D  + +G    D A
Sbjct: 166 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 213

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 7e-05
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 214 VKKLLSEGVDANF-CDKQGMSLLHLAALFNRTDIAFILMESGANMDC 259
           +  LL++G + N   DK G + LHLAA F R D A  L+++GA+ + 
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANS 51

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 17/70 (24%), Positives = 29/70 (41%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN 261
           L  A    +  AV  LL    + +  D +  + L LAA     + +  L+++ AN +  +
Sbjct: 127 LHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITD 186

Query: 262 AQGESPLDCA 271
                P D A
Sbjct: 187 HMDRLPRDVA 196

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 202 LRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL 250
           L  A + G   A K LL    +    D        +A+     DI  +L
Sbjct: 160 LFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 231 GMSLLHLAALFNRTDIAF----ILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKM 283
           G S LHLA +     +       +    A ++ +N   ++PL  A +T Q ++ + +
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 58

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 13/43 (30%), Positives = 14/43 (32%)

Query: 214 VKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGAN 256
           V  LL  G D N    QG S   L      T I   L +    
Sbjct: 161 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 10/34 (29%), Positives = 13/34 (38%)

Query: 199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGM 232
           G  L  A   GD   +  LL   V+ N  +  G 
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.86
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	99.84
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	99.84
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.83
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	99.82
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.82
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.81
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.81
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.79
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.79
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.78
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.78
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.78
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.78
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.77
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.77
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.76
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.75
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.75
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.75
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.73
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.73
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.73
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.73
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.73
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.72
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	99.61
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.57
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.55
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	99.08
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	96.33
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	96.27
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	95.69
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	95.4
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	93.21
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	88.68
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	86.44
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	85.57
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	84.74
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	82.08

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.8e-25  Score=169.40  Aligned_cols=97  Identities=23%  Similarity=0.233  Sum_probs=94.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHH
Q 022481          199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYK  278 (296)
Q Consensus       199 ~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~  278 (296)
                      .|||+||++.|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCC
Q 022481          279 MRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       279 iv~~Ll~~gadi~~~n~  295 (296)
                      ++++|+++|+|++.+|+
T Consensus        83 ~v~~Ll~~Gad~~~~d~   99 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGP   99 (118)
T ss_dssp             HHHHHHTTCCCSSSSSS
T ss_pred             hhhhhhcccccceeeCC
Confidence            99999999999998875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.7e-24  Score=166.74  Aligned_cols=95  Identities=24%  Similarity=0.347  Sum_probs=72.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHH
Q 022481          200 EGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKM  279 (296)
Q Consensus       200 t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~i  279 (296)
                      +.||+|+..|++++|++|+++|+|+|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            36777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCCCCCCC
Q 022481          280 RQKMEEDKNNVGSTT  294 (296)
Q Consensus       280 v~~Ll~~gadi~~~n  294 (296)
                      +++|+++|++++..+
T Consensus        83 v~~Ll~~ga~v~~~~   97 (130)
T d1ycsb1          83 CKFLVESGAAVFAMT   97 (130)
T ss_dssp             HHHHHHTTCCTTCCC
T ss_pred             HHHHHHcCCCccccc
Confidence            777777777777554

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-24  Score=142.64  Aligned_cols=63  Identities=37%  Similarity=0.702  Sum_probs=59.4

Q ss_pred             CCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481            4 EPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   68 (296)
Q Consensus         4 ~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   68 (296)
                      .|+||+++..|+.|+++|++|+||||||.||+|||+.|+.+++.+|..+  +++|||+.||+.|+
T Consensus         1 rW~~d~~~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~~~~~~~~~~--~~~RVC~~C~~~l~   63 (64)
T d1joca1           1 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSK--KPVRVCDACFNDLQ   63 (64)
T ss_dssp             CCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTCS--SCEEECHHHHHHTT
T ss_pred             CCCCcccCCcCcCcCCcccCCccccchhhhCCeecccccCCceecCCCC--CccEehHHHHHHhc
Confidence            5999999999999999999999999999999999999999999888764  79999999999885

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.2e-22  Score=160.68  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=97.8

Q ss_pred             cccccCCCCCCCCCCCCCccccccChHHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 022481          174 FSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKN---GDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFIL  250 (296)
Q Consensus       174 ~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~---g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~L  250 (296)
                      +..++..|.+.+...... .....|.||||+|+..   |..++|++|+++|+++|.+|..|+||||+|+..|+.+++++|
T Consensus        22 l~~~~~~g~d~~~~~~~~-~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~L  100 (154)
T d1dcqa1          22 LLQAYADGVDLTEKIPLA-NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL  100 (154)
T ss_dssp             HHHHHHTTCCTTSBCCCS-SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCCcCCCCCcc-cCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccc
Confidence            344555666555432222 1233567799999975   688999999999999999999999999999999999999999


Q ss_pred             HHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          251 MESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       251 L~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      +++|++++.+|.+|+||||+|+..|+.+++++|++.++.
T Consensus       101 l~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         101 LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999998764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.5e-22  Score=166.52  Aligned_cols=120  Identities=15%  Similarity=0.168  Sum_probs=113.7

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF  248 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~  248 (296)
                      +..+++++|++.|.+++..+..+.+       |||+|+..|+.+++++|+++|++++.+|.+|.||||+|+..++.++++
T Consensus        81 ~~~~i~~~Ll~~~~d~~~~d~~g~t-------pL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~  153 (223)
T d1uoha_          81 GRDEIVKALLGKGAQVNAVNQNGCT-------PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH  153 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cccchhHHHhccCceeEeeCCCCCc-------hhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhh
Confidence            4567788999999999888877766       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          249 ILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       249 ~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +|+++|++++.+|.+|+||||+|+..|+.++|++||++|||++++|+
T Consensus       154 ~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~  200 (223)
T d1uoha_         154 ILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK  200 (223)
T ss_dssp             HHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             hhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.1e-23  Score=157.17  Aligned_cols=114  Identities=20%  Similarity=0.265  Sum_probs=98.5

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC-cHHHHHHHcCC
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGM-SLLHLAALFNR  243 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~-TpLh~A~~~g~  243 (296)
                      ++..+..++++.|++.|+++|..+..+.+       +||+|+ .|+.+++++|+++|+++|.+|..|. ||||+|+..|+
T Consensus        10 Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t-------~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_          10 AAARGRVEEVRALLEAGANPNAPNSYGRR-------PIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             HHHHTCHHHHHHHHTTTCCTTCCCSSSCC-------TTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             HHHCCCHHHHHHHHHcCCccccccccccc-------cccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            34456777889999999999888877766       888664 6899999999999999999888765 69999999999


Q ss_pred             HHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481          244 TDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  286 (296)
Q Consensus       244 ~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  286 (296)
                      .+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999999999999999999999999998753

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.3e-22  Score=155.92  Aligned_cols=115  Identities=22%  Similarity=0.153  Sum_probs=103.6

Q ss_pred             CCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 022481          167 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  246 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i  246 (296)
                      ..+..++++.|++.|+++|..+..+.+       |||+|+..|+.+++++|++.|+++|.+|.+|+||||+|+.+|+.++
T Consensus        10 ~~G~~~~v~~Ll~~g~d~n~~d~~g~t-------~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1          10 LEGEFDLVQRIIYEVDDPSLPNDEGIT-------ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHTCHHHHHHHTSTTSSCCCCCTTSCC-------HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHcCCCcccccccccc-------ccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            345677899999999999999887776       9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCccCC-CCCCHhhHh--hhcCcHHHHHHHHHcCC
Q 022481          247 AFILMESGANMDCKNA-QGESPLDCA--PVTLQYKMRQKMEEDKN  288 (296)
Q Consensus       247 v~~LL~~ga~~~~~d~-~g~TpL~~A--~~~g~~~iv~~Ll~~ga  288 (296)
                      +++|+++|++++..+. .|+|+++++  ...|+.+++++|+..+.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            9999999999998875 588887765  56789999999997643

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.3e-22  Score=153.46  Aligned_cols=96  Identities=17%  Similarity=0.236  Sum_probs=90.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCC-CHhhHhhhcCcH
Q 022481          199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGE-SPLDCAPVTLQY  277 (296)
Q Consensus       199 ~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~-TpL~~A~~~g~~  277 (296)
                      .++||+|+..|++++|++||++|+++|.+|..|.||||+|+ .|+.+++++|+++|++++.+|..+. ||||+|+..|+.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~   82 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   82 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            45999999999999999999999999999999999999775 7999999999999999999998876 699999999999


Q ss_pred             HHHHHHHHcCCCCCCCCC
Q 022481          278 KMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       278 ~iv~~Ll~~gadi~~~n~  295 (296)
                      +++++|+++|++++.+|+
T Consensus        83 ~~v~~Ll~~ga~~~~~d~  100 (125)
T d1bi7b_          83 DTLVVLHRAGARLDVRDA  100 (125)
T ss_dssp             HHHHHHHHHTCCSSCCCT
T ss_pred             cccccccccccccccccC
Confidence            999999999999999875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=2.8e-23  Score=157.10  Aligned_cols=101  Identities=21%  Similarity=0.224  Sum_probs=94.2

Q ss_pred             CCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q 022481          166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  245 (296)
Q Consensus       166 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~  245 (296)
                      ...++..+++.|++.|++++..+..+.+       |||+|+..|+.+++++|+++|+++|.+|..|+||||+|+.+|+.+
T Consensus        10 ~~~g~~~~v~~Ll~~g~d~n~~~~~g~t-------~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_          10 LKNGDLDEVKDYVAKGEDVNRTLEGGRK-------PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHTTCHHHHHHHHTTTCCCCCCSSSSCC-------TTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             HHCCCHHHHHHHHHhhhccccccccccc-------cccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            3456677899999999999998877776       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCccCCCCCCHhhHhhh
Q 022481          246 IAFILMESGANMDCKNAQGESPLDCAPV  273 (296)
Q Consensus       246 iv~~LL~~ga~~~~~d~~g~TpL~~A~~  273 (296)
                      ++++||++|+|++.+|.+|+||||+|..
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCSS
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHhH
Confidence            9999999999999999999999999954

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=1.6e-22  Score=137.74  Aligned_cols=62  Identities=37%  Similarity=0.957  Sum_probs=57.2

Q ss_pred             CccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481            8 FQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   69 (296)
Q Consensus         8 ~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   69 (296)
                      |.+...|+.|+++|++|+||||||.||++||..|+.+++.||.++..+++|||+.||+.|++
T Consensus        10 W~~~~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~~~~lp~~~~~~p~RVC~~C~~~l~~   71 (72)
T d1dvpa2          10 WADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR   71 (72)
T ss_dssp             CCCCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             CCcCCccccCCCcccCccccccccccCCeeChhhhCCceECcccCCCCCCEeCHHHHHHHHC
Confidence            34456799999999999999999999999999999999999999888999999999999875

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.7e-22  Score=135.84  Aligned_cols=63  Identities=40%  Similarity=0.885  Sum_probs=57.8

Q ss_pred             CCCCCccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcc
Q 022481            4 EPPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSR   69 (296)
Q Consensus         4 ~w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~   69 (296)
                      +|+++   ..|+.|+++|++|+||||||.||++||..|+++++++|.++..+++|||+.||+.++.
T Consensus         1 ~W~~~---~~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~~l~~~~~~~p~RVC~~C~~~~~~   63 (67)
T d1vfya_           1 DWIDS---DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEF   63 (67)
T ss_dssp             CCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             CCCcC---cccccCCCcccCcccccccccCCCEecccccCCcEECcccCCCCCcEeCHHHHHHHHH
Confidence            48765   4799999999999999999999999999999999999999888999999999998754

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.9e-20  Score=158.70  Aligned_cols=107  Identities=20%  Similarity=0.170  Sum_probs=95.9

Q ss_pred             cccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHcCCHHHHHHHHHCC
Q 022481          176 SIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC-DKQGMSLLHLAALFNRTDIAFILMESG  254 (296)
Q Consensus       176 ~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~-d~~g~TpLh~A~~~g~~~iv~~LL~~g  254 (296)
                      .+...+...+..+..+.+       |||+|+..++.+++++|++.+++.+.. +..|.||||+|+..|+.+++++|+++|
T Consensus       143 ~~~~~~~~in~~d~~g~T-------pLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~g  215 (255)
T d1oy3d_         143 RDEDWRLQLEAENYDGHT-------PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG  215 (255)
T ss_dssp             -CCCGGGGTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhhhcCcccccccccCcc-------cccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCC
Confidence            344455666666665555       999999999999999999999998865 578999999999999999999999999


Q ss_pred             CCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          255 ANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       255 a~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      ++++.+|.+|+||||+|+..++.+++++|+++||+
T Consensus       216 adin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999997

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=3.2e-21  Score=136.16  Aligned_cols=65  Identities=31%  Similarity=0.696  Sum_probs=58.3

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhcccCCCC
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTGKDN   74 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~~~~   74 (296)
                      .....|+.|+++|++|+||||||.||+|||..|+.+++.||..+ .+++|||+.||..|++.....
T Consensus         7 ~~~s~C~~C~~~Fs~~~rrhhCr~CG~vfC~~Cs~~~~~lp~~~-~~~~RVC~~C~~~l~~~~~~~   71 (88)
T d1wfka_           7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAG-NTQQKVCKQCHTILTRGSSDN   71 (88)
T ss_dssp             CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTT-SEEEEECHHHHHHHHHCCCCC
T ss_pred             cccCcCcccCchhccccccccccccChhhChHHhCCccccCCCC-CCCCeECHHHHHHHHhccccc
Confidence            35678999999999999999999999999999999999999887 589999999999998764443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.6e-20  Score=146.12  Aligned_cols=114  Identities=20%  Similarity=0.232  Sum_probs=99.7

Q ss_pred             CCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          165 SRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       165 ~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      .+..+....+..|+..+.+++..+..+..       +|++++..++.++++.++++|+++|.+|..|+||||+|+..|+.
T Consensus        42 ~A~~~~~~~v~~Ll~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~  114 (156)
T d1bd8a_          42 VMMFGSTAIALELLKQGASPNVQDTSGTS-------PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT  114 (156)
T ss_dssp             HSCTTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH
T ss_pred             ccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccCCCCeeeccccccccc
Confidence            34446667788888888888887766665       99999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHc
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEED  286 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  286 (296)
                      +++++|+ .|++++.+|.+|+||||+|+..|+.+++++|++|
T Consensus       115 ~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         115 AVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             ccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999877 6899999999999999999999999999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.6e-20  Score=158.37  Aligned_cols=121  Identities=18%  Similarity=0.175  Sum_probs=104.2

Q ss_pred             CCCcCcccccC-CCCCCCCCCCCCccccccChHHHHHHHH----cCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 022481          169 TSNSNFSSIFN-PGQVTNGATDKPRMEYEVNGEGLRDAIK----NGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNR  243 (296)
Q Consensus       169 ~~~~~~~~ll~-~g~~~~~~~~~~~~~~~~~~t~Lh~A~~----~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~  243 (296)
                      +....++.|+. .|++++..+..+..       +++.+..    .+..+++++|+++|++++.+|..|.||||+|+..|+
T Consensus       159 ~~~~~~~~Ll~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~  231 (285)
T d1wdya_         159 GHVEVLKILLDEMGADVNACDNMGRN-------ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             TCHHHHHHHHHTSCCCTTCCCTTSCC-------HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHhccCCCcccccCCCCc-------ccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCc
Confidence            44566777774 57888888776665       4444433    334578999999999999999999999999999999


Q ss_pred             HHHHHHHHHC-CCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCCC
Q 022481          244 TDIAFILMES-GANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTSV  296 (296)
Q Consensus       244 ~~iv~~LL~~-ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~l  296 (296)
                      .+++++||++ |+++|.+|.+|.||||+|+..|+.++|++||++|||+|++|.|
T Consensus       232 ~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~~  285 (285)
T d1wdya_         232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV  285 (285)
T ss_dssp             HHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSCC
T ss_pred             HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccCc
Confidence            9999999985 9999999999999999999999999999999999999999975

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=4.8e-20  Score=159.17  Aligned_cols=127  Identities=20%  Similarity=0.204  Sum_probs=110.8

Q ss_pred             ccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCccc--------------
Q 022481          162 TARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFC--------------  227 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~--------------  227 (296)
                      ...++..|+...++.||+.|+++|..+..+.+       |||+|+..|+.++|++|+++|++.+..              
T Consensus        44 l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T-------~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          44 FLAACSSGDTEEVLRLLERGADINYANVDGLT-------ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCB-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCc-------HHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            45556668888999999999999988887777       999999999999999999887653332              


Q ss_pred             -------------------------------------------------------------------------------C
Q 022481          228 -------------------------------------------------------------------------------D  228 (296)
Q Consensus       228 -------------------------------------------------------------------------------d  228 (296)
                                                                                                     +
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence                                                                                           2


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          229 KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       229 ~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ..|.||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.++|++|+++|||++++|+
T Consensus       197 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~  263 (291)
T d1s70b_         197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK  263 (291)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            3456788888888889999999999999999999999999999999999999999999999999875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.4e-20  Score=152.46  Aligned_cols=112  Identities=21%  Similarity=0.245  Sum_probs=103.9

Q ss_pred             CCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q 022481          166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTD  245 (296)
Q Consensus       166 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~  245 (296)
                      ...+...++++|++.|.+++..+..+.+       +||+|+..++.+++++|++.|.++|.+|.+|+||||+|+..|+.+
T Consensus       111 ~~~~~~e~~~~Ll~~g~d~~~~~~~~~t-------~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~  183 (223)
T d1uoha_         111 ASKNRHEIAVMLLEGGANPDAKDHYEAT-------AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE  183 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCc-------cchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHH
Confidence            3445677899999999999988877776       999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHH
Q 022481          246 IAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEE  285 (296)
Q Consensus       246 iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  285 (296)
                      ++++||++||+++.+|.+|+||||+|. .|+.+++++||+
T Consensus       184 ~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         184 EAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            999999999999999999999999985 699999999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.8e-19  Score=146.42  Aligned_cols=56  Identities=16%  Similarity=0.192  Sum_probs=42.7

Q ss_pred             HcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          240 LFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       240 ~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ..+...++++++++|.+++.+|..|.||||+|+..|+.+++++|+++|+|++++|.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~  208 (228)
T d1k1aa_         153 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC  208 (228)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            33333333444445566666677889999999999999999999999999998874

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=3.9e-19  Score=155.22  Aligned_cols=109  Identities=13%  Similarity=0.085  Sum_probs=88.1

Q ss_pred             CCCCCCCC-CCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH-------HHHHH--
Q 022481          180 PGQVTNGA-TDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT-------DIAFI--  249 (296)
Q Consensus       180 ~g~~~~~~-~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~-------~iv~~--  249 (296)
                      .+.++|.. |..++       ||||+|+..|+.++|++||++|++++.+|..|+||||+|+..++.       +++++  
T Consensus        95 ~~~dvn~~~D~~G~-------T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~  167 (301)
T d1sw6a_          95 TQLNLNIPVDEHGN-------TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  167 (301)
T ss_dssp             SCCCSCSCCSTTCC-------CHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             cCCCcCcCcCCCCC-------CHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh
Confidence            44555543 44444       599999999999999999999999999999999999999976541       23222  


Q ss_pred             ----------------------------------------HHHCCC----------------------------------
Q 022481          250 ----------------------------------------LMESGA----------------------------------  255 (296)
Q Consensus       250 ----------------------------------------LL~~ga----------------------------------  255 (296)
                                                              |++.+.                                  
T Consensus       168 ~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (301)
T d1sw6a_         168 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWI  247 (301)
T ss_dssp             GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHH
T ss_pred             hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHH
Confidence                                                    222211                                  


Q ss_pred             ---CCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          256 ---NMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       256 ---~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                         .+|.+|.+|+||||+|++.|+.++|++|+++|||++++|+
T Consensus       248 ~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~  290 (301)
T d1sw6a_         248 IANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK  290 (301)
T ss_dssp             HHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             HhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence               1688899999999999999999999999999999999986

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=3.6e-19  Score=146.18  Aligned_cols=107  Identities=19%  Similarity=0.173  Sum_probs=98.2

Q ss_pred             CCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q 022481          170 SNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFI  249 (296)
Q Consensus       170 ~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~  249 (296)
                      .......|+..+.+.+..+..+.+       +|++++..+...+++.|++.+.+++..|..|.||||+|+..|+.+++++
T Consensus       102 ~~~~~~~L~~~~~~~~~~~~~~~t-------~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~  174 (209)
T d1ot8a_         102 IEGMVEDLITADADINAADNSGKT-------ALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA  174 (209)
T ss_dssp             CTTHHHHHHHTTCCTTCBCTTSCB-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             chhhhhhhhhhcccccccCCCCCC-------cchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHH
Confidence            334456777888888877766665       9999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHH
Q 022481          250 LMESGANMDCKNAQGESPLDCAPVTLQYKMRQKM  283 (296)
Q Consensus       250 LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~L  283 (296)
                      ||++|+|++.+|..|+||||+|+..|+.++|++|
T Consensus       175 Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         175 LLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999999986

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=6.8e-19  Score=138.84  Aligned_cols=95  Identities=20%  Similarity=0.253  Sum_probs=88.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccc------CCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCccCCCCCCHhhHh
Q 022481          201 GLRDAIKNGDAAAVKKLLSEGVDANFC------DKQGMSLLHLAALF---NRTDIAFILMESGANMDCKNAQGESPLDCA  271 (296)
Q Consensus       201 ~Lh~A~~~g~~~~v~~Ll~~gadvn~~------d~~g~TpLh~A~~~---g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A  271 (296)
                      .|+.|++.+++..+..++..|+|++..      +..|+||||+|+..   ++.+++++||++|+++|.+|.+|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            567899999999999999999988765      67899999999974   678999999999999999999999999999


Q ss_pred             hhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          272 PVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       272 ~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +..|+.+++++|+++|++++++|.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~  112 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANE  112 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccccccccccccCccccccCC
Confidence            999999999999999999999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.78  E-value=6.9e-19  Score=150.28  Aligned_cols=129  Identities=18%  Similarity=0.176  Sum_probs=108.4

Q ss_pred             ccccCCCCCCCCcCcccc--------cCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Q 022481          160 ENTARSRGSTSNSNFSSI--------FNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQG  231 (296)
Q Consensus       160 ~~~~~~~~~~~~~~~~~l--------l~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g  231 (296)
                      ++..-++..+...+++.|        +..|+++|..+..|.+       |||+|+..|+.++|++||++|++++.+|.+|
T Consensus        35 T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~T-------pLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g  107 (277)
T d2fo1e1          35 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT-------PLMLAVLARRRRLVAYLMKAGADPTIYNKSE  107 (277)
T ss_dssp             CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTC
T ss_pred             cHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCe-------eeccccccccccccccccccccccccccccc
Confidence            344455566777888776        5679999999888777       9999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHH--------------------------------------------------------------
Q 022481          232 MSLLHLAALFNRTDIAFI--------------------------------------------------------------  249 (296)
Q Consensus       232 ~TpLh~A~~~g~~~iv~~--------------------------------------------------------------  249 (296)
                      .||||+|...++.+++.+                                                              
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            999888887776543322                                                              


Q ss_pred             -------------------HHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          250 -------------------LMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       250 -------------------LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                                         |...+.+++.+|..|+||||+|+..|+.++|++|+++|+|++++|+
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~  252 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA  252 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCS
T ss_pred             CCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCC
Confidence                               3345778888999999999999999999999999999999999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.4e-19  Score=162.92  Aligned_cols=119  Identities=24%  Similarity=0.245  Sum_probs=100.6

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF  248 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~  248 (296)
                      +...++++|++.|++++..+..+.+       +||.++..++.++++++++.|+++|.+|.+|.||||+|+.+|+.++|+
T Consensus       275 ~~~~i~~~Ll~~g~~~~~~~~~~~t-------~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~  347 (408)
T d1n11a_         275 GHVPVADVLIKHGVMVDATTRMGYT-------PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT  347 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCSSCCC-------HHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHHCCCccccccccccc-------cchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            4456677888888888877766655       999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHH---HcCCCCCCCC
Q 022481          249 ILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKME---EDKNNVGSTT  294 (296)
Q Consensus       249 ~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll---~~gadi~~~n  294 (296)
                      +||++||++|.+|.+|+||||+|+..|+.++|++|.   ++++++...|
T Consensus       348 ~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~  396 (408)
T d1n11a_         348 LLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD  396 (408)
T ss_dssp             HHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC---
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhccccccccc
Confidence            999999999999999999999999999999887654   3566555443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.2e-19  Score=149.58  Aligned_cols=111  Identities=21%  Similarity=0.200  Sum_probs=100.4

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEG-VDANFCDKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~g-advn~~d~~g~TpLh~A~~~g~~~iv  247 (296)
                      ....++..|+..|...+..+..+.+       +||+|+..|+.+++++|++.| .++|.+|.+|+||||+|+..|+.+++
T Consensus       116 ~~~~~~~~l~~~~~~~~~~~~~g~t-------~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v  188 (229)
T d1ixva_         116 KWFEVSQFLIENGASVRIKDKFNQI-------PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA  188 (229)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCC-------HHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             chhhhhhhhhhhcccccccCCCCCC-------ccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHH
Confidence            4456677888899888887777666       999999999999999999986 78999999999999999999999999


Q ss_pred             HHHHH-CCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          248 FILME-SGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       248 ~~LL~-~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      ++||+ +|++++.+|..|+||||+|+   +.+++++|+++|+|
T Consensus       189 ~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         189 VLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             HHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            99997 59999999999999999998   46899999999997

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.9e-19  Score=151.23  Aligned_cols=95  Identities=17%  Similarity=0.146  Sum_probs=88.1

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhh
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSEGVD---ANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPV  273 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gad---vn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~  273 (296)
                      .|.||||+|+..|+.+++++||++|++   ++.+|..|.||||+|+..|+.+++++||++|++++..|.+|+||||+|+.
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~   87 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR   87 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhc
Confidence            455699999999999999999999988   66788999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHcCCCCC
Q 022481          274 TLQYKMRQKMEEDKNNVG  291 (296)
Q Consensus       274 ~g~~~iv~~Ll~~gadi~  291 (296)
                      .++.+++++|++.+...+
T Consensus        88 ~~~~~~~~~Ll~~~~~~~  105 (255)
T d1oy3d_          88 VRAHTCACVLLQPRPSHP  105 (255)
T ss_dssp             TTCHHHHHHHSSSCCSSC
T ss_pred             cCchHHHHHHHhhccchh
Confidence            999999999998876543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=4.9e-20  Score=151.43  Aligned_cols=117  Identities=29%  Similarity=0.340  Sum_probs=101.0

Q ss_pred             cCcccccCCCCCCCC-CCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcc------------------------
Q 022481          172 SNFSSIFNPGQVTNG-ATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANF------------------------  226 (296)
Q Consensus       172 ~~~~~ll~~g~~~~~-~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~------------------------  226 (296)
                      ++++.|++.|+++|. .|..|.+       |||+||..|+.+++++||+.|+++|.                        
T Consensus         3 ~~v~~Ll~~g~din~~~d~~G~t-------~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDKTGET-------SLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQIL   75 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCC-------HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCcCcCcCCCCCC-------HHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccc
Confidence            456778888888876 3555555       99999999999999999988775544                        


Q ss_pred             -------------------------------------------cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCC
Q 022481          227 -------------------------------------------CDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQ  263 (296)
Q Consensus       227 -------------------------------------------~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~  263 (296)
                                                                 ++..|+||||+++..+..++++.|++++++++..|..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~  155 (209)
T d1ot8a_          76 LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDK  155 (209)
T ss_dssp             HTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccc
Confidence                                                       3456789999999999999999999999999999999


Q ss_pred             CCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          264 GESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       264 g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      |.||||+|+..|+.+++++||++|||++.+|+
T Consensus       156 g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~  187 (209)
T d1ot8a_         156 DETPLFLAAREGSYEASKALLDNFANREITDH  187 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cccccchhccccHHHHHHHHHHCCCCCCCcCC
Confidence            99999999999999999999999999999875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.9e-19  Score=140.05  Aligned_cols=121  Identities=17%  Similarity=0.208  Sum_probs=108.2

Q ss_pred             CCCCCCcCcccccC-CCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 022481          166 RGSTSNSNFSSIFN-PGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRT  244 (296)
Q Consensus       166 ~~~~~~~~~~~ll~-~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~  244 (296)
                      +..++...++.|+. .+.+++..+..+.+       |||+|+ .|+.+++++||+++.+++..+..|.+||++++..++.
T Consensus        10 a~~g~~~~vk~lL~~~~~~~n~~d~~g~t-------~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_          10 AARGDVQEVRRLLHRELVHPDALNRFGKT-------ALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHTCHHHHHHHHHTTCCCTTCCCTTSCC-------HHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHcCCHHHHHHHHHhCCCCCCccCCCCCc-------cccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            33456667787775 47788888877776       999987 5889999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          245 DIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       245 ~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      +++++++++|+++|.+|.+|.||||+|+..|+.+++++|+ .|++++.+|.
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~  131 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDA  131 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCT
T ss_pred             cccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCC
Confidence            9999999999999999999999999999999999999887 7899998875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.5e-19  Score=145.79  Aligned_cols=115  Identities=18%  Similarity=0.178  Sum_probs=78.8

Q ss_pred             cccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH------
Q 022481          174 FSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA------  247 (296)
Q Consensus       174 ~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv------  247 (296)
                      ++.+...|+.+|..+..+.+       |||+|+..|+.+++++|++.|++++.+|..|.||||+++..++.+++      
T Consensus        22 i~~~~~~~~~in~~d~~g~T-------pLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~   94 (221)
T d1iknd_          22 IRQVKGDLAFLNFQNNLQQT-------PLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS   94 (221)
T ss_dssp             CC-----CCCCCCCCTTCCC-------HHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHS
T ss_pred             HHHHHhCCCCcccCCCCCCc-------cccccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence            44455566667766666555       77777777777777777777777777766666666666655555444      


Q ss_pred             ---------------------------------HHHHHCCCCCCccC-CCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCC
Q 022481          248 ---------------------------------FILMESGANMDCKN-AQGESPLDCAPVTLQYKMRQKMEEDKNNVGST  293 (296)
Q Consensus       248 ---------------------------------~~LL~~ga~~~~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~  293 (296)
                                                       ++|+..|+.++..+ .+|+||||+|+..|+.+++++|+++|+|++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~  174 (221)
T d1iknd_          95 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV  174 (221)
T ss_dssp             TTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCC
T ss_pred             cccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccccc
Confidence                                             44445556666554 46899999999999999999999999999888


Q ss_pred             CC
Q 022481          294 TS  295 (296)
Q Consensus       294 n~  295 (296)
                      |.
T Consensus       175 ~~  176 (221)
T d1iknd_         175 TY  176 (221)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.4e-18  Score=136.22  Aligned_cols=113  Identities=20%  Similarity=0.199  Sum_probs=78.5

Q ss_pred             CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481          168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv  247 (296)
                      .+..++++.|++.|++++..+..+.+       +|+.++..+..+.++.|++.+.+++..|..|.++||+|+..++.+++
T Consensus        43 ~~~~ei~~~Ll~~~a~~~~~~~~~~~-------~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  115 (156)
T d1ihba_          43 LGNPEIARRLLLRGANPDLKDRTGFA-------VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV  115 (156)
T ss_dssp             SSCHHHHHHHHHTTCCTTCCCTTSCC-------HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccccccccccCcc-------ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34455566666666666555554444       66666666666666666666666666677777777777777777777


Q ss_pred             HHHHHCCC-CCCccCCCCCCHhhHhhhcCcHHHHHHHHHcC
Q 022481          248 FILMESGA-NMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  287 (296)
Q Consensus       248 ~~LL~~ga-~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  287 (296)
                      ++||++|+ +++.+|.+|+||||+|+..++.+++++|+++|
T Consensus       116 ~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         116 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            77777765 67777777777887777777777777777776

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-18  Score=143.57  Aligned_cols=124  Identities=19%  Similarity=0.176  Sum_probs=105.9

Q ss_pred             CCCCCCcCcccccCCCCCCCCCCCCCccccc--------------------------------cChHHHHHHHHcCCHHH
Q 022481          166 RGSTSNSNFSSIFNPGQVTNGATDKPRMEYE--------------------------------VNGEGLRDAIKNGDAAA  213 (296)
Q Consensus       166 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~--------------------------------~~~t~Lh~A~~~g~~~~  213 (296)
                      ...+...+++.|++.|++++..+..+.+...                                .+.|+||+|+..++.+.
T Consensus        47 ~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  126 (221)
T d1iknd_          47 VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI  126 (221)
T ss_dssp             HHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhh
Confidence            3445667778888888888777766554321                                35678999999999999


Q ss_pred             HHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCC
Q 022481          214 VKKLLSEGVDANFCD-KQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       214 v~~Ll~~gadvn~~d-~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  289 (296)
                      +++|+..|++++..+ ..|+||||+|+..|+.+++++||++|+|++.+|.+|+||||+|+..++.+++++|++.+.+
T Consensus       127 ~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         127 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             eeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999988765 5699999999999999999999999999999999999999999999999999999998764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.1e-18  Score=155.17  Aligned_cols=121  Identities=16%  Similarity=0.208  Sum_probs=111.2

Q ss_pred             CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481          168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv  247 (296)
                      .+....++.++..+...+..+..+.+       +|+.|+..++.+++++|+++|++++..+..+.||||.++..++.+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~g~~-------~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~  313 (408)
T d1n11a_         241 EGHAEMVALLLSKQANGNLGNKSGLT-------PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV  313 (408)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHH
T ss_pred             hCcHhHhhhhhccccccccccCCCCC-------hhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceee
Confidence            34455667777888888777766665       99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCCC
Q 022481          248 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       248 ~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n~  295 (296)
                      ++|+++|+++|.+|.+|+||||+|+..|+.++|++|+++|||+|++|+
T Consensus       314 ~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~  361 (408)
T d1n11a_         314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS  361 (408)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCS
T ss_pred             eeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.8e-18  Score=134.55  Aligned_cols=121  Identities=20%  Similarity=0.290  Sum_probs=109.8

Q ss_pred             CCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHH
Q 022481          167 GSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDI  246 (296)
Q Consensus       167 ~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~i  246 (296)
                      ..++.++++.|++.|++++..+..+.+       |||+|+ .|+.+++++|+++|++++..+..|.++|+.++..++..+
T Consensus        10 ~~g~~~~v~~Ll~~g~d~n~~d~~g~T-------pL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_          10 ARGDLEQLTSLLQNNVNVNAQNGFGRT-------ALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHTCHHHHHHHTTSCCCTTCCCTTSCC-------HHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HcCCHHHHHHHHHCCCCcCccCCcccc-------cccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            346677889999999999998877776       999885 789999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCC-CCCCCCC
Q 022481          247 AFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKN-NVGSTTS  295 (296)
Q Consensus       247 v~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-di~~~n~  295 (296)
                      +++|++++.+++..|..|.+|||+|+..++.+++++|+++|+ +++.+|+
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~  131 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH  131 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            999999999999999999999999999999999999999987 7777764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.75  E-value=1.1e-18  Score=149.12  Aligned_cols=111  Identities=23%  Similarity=0.177  Sum_probs=94.3

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHH--------HHcCCCCcccCCCCCcHHHHHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKL--------LSEGVDANFCDKQGMSLLHLAAL  240 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~L--------l~~gadvn~~d~~g~TpLh~A~~  240 (296)
                      +...+.+.|.+.+.+.... ..+       .||||+|+..|+.++|++|        ++.|+|||.+|.+|+||||+|+.
T Consensus        12 ~~~~~~~~l~~~~~n~~~~-~~g-------~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~   83 (277)
T d2fo1e1          12 GSYAITEPITRESVNIIDP-RHN-------RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVL   83 (277)
T ss_dssp             SSSCCCSCCSTTTTTTCCC-SSC-------CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCcCCC-CCC-------ccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccc
Confidence            4455666676766554322 124       4599999999999988776        56799999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcC
Q 022481          241 FNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDK  287 (296)
Q Consensus       241 ~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  287 (296)
                      .|+.+++++||++|++++.+|.+|.|||++|...++.+++++++..+
T Consensus        84 ~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  130 (277)
T d2fo1e1          84 ARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNST  130 (277)
T ss_dssp             HTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSH
T ss_pred             cccccccccccccccccccccccccccccchhhhcchhhhhhhhhcc
Confidence            99999999999999999999999999999999999999999887754

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.73  E-value=6.9e-18  Score=145.39  Aligned_cols=99  Identities=27%  Similarity=0.439  Sum_probs=94.6

Q ss_pred             cChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCc
Q 022481          197 VNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      .++|+||+|+..|++++|++||++|+|+|.+|..|+||||+|+..|+.+++++|+++|++.+..+..+.|||++|+..++
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCC
Q 022481          277 YKMRQKMEEDKNNVGSTTS  295 (296)
Q Consensus       277 ~~iv~~Ll~~gadi~~~n~  295 (296)
                      .++++.|+++|+..+..|.
T Consensus       119 ~~~~~~l~~~~~~~~~~~~  137 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNS  137 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCT
T ss_pred             cchhhcccccCcccccccc
Confidence            9999999999999887653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=5.4e-18  Score=132.42  Aligned_cols=119  Identities=18%  Similarity=0.193  Sum_probs=51.0

Q ss_pred             CCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 022481          168 STSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIA  247 (296)
Q Consensus       168 ~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv  247 (296)
                      .+..++++.||+.|++.+ .+..+.+       |||+|+..++.++++.++.........+..+.+++++++...+.+++
T Consensus        12 ~g~~~~v~~LL~~ga~~~-~~~~g~t-------~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (153)
T d1awcb_          12 AGQDDEVRILMANGAPFT-TDWLGTS-------PLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIV   83 (153)
T ss_dssp             HTCHHHHHHHHHHTCCCC-CCTTCCC-------HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             CCCHHHHHHHHHcCCCcc-cccCCCc-------cccccccccccccccccccccccccccccccccccccccccccceee
Confidence            344555666666665544 2333333       55555555543333333332222222122222222222222222333


Q ss_pred             HHHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCCCCC
Q 022481          248 FILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVGSTT  294 (296)
Q Consensus       248 ~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~n  294 (296)
                      ++|+.+|++++.+|.+|+||||+|+..|+.+++++|+++|+|++.+|
T Consensus        84 ~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d  130 (153)
T d1awcb_          84 EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQS  130 (153)
T ss_dssp             HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccC
Confidence            33444444455555555555555555555555555555555554443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=7.1e-18  Score=131.72  Aligned_cols=108  Identities=22%  Similarity=0.270  Sum_probs=95.0

Q ss_pred             CCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q 022481          169 TSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAF  248 (296)
Q Consensus       169 ~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~  248 (296)
                      +....+..++...............       .+++++...+.+.+++|+.+|++++.+|..|+||||+|+..|+.++++
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~  117 (153)
T d1awcb_          45 GHFSTTEVLLRAGVSRDARTKVDRT-------PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE  117 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTCCC-------HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccccccccc-------ccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheee
Confidence            4444555666666555555544444       899999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCCccCCCCCCHhhHhhhcCcHHHHHHH
Q 022481          249 ILMESGANMDCKNAQGESPLDCAPVTLQYKMRQKM  283 (296)
Q Consensus       249 ~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~iv~~L  283 (296)
                      +|+++|++++.+|.+|.||||+|+..|+.+++++|
T Consensus       118 ~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         118 LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999987

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=7.7e-18  Score=140.03  Aligned_cols=98  Identities=18%  Similarity=0.098  Sum_probs=92.4

Q ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCccCCCCCCHhhHhhhcCc
Q 022481          198 NGEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESG-ANMDCKNAQGESPLDCAPVTLQ  276 (296)
Q Consensus       198 ~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~g-a~~~~~d~~g~TpL~~A~~~g~  276 (296)
                      +.++|++++..++.+++++|++.|.+.+..|..|+||||+|+..|+.+++++|+++| .+++.+|.+|+||||+|+..|+
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~  184 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH  184 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccccc
Confidence            456899999999999999999999999999999999999999999999999999996 7899999999999999999999


Q ss_pred             HHHHHHHHH-cCCCCCCCCC
Q 022481          277 YKMRQKMEE-DKNNVGSTTS  295 (296)
Q Consensus       277 ~~iv~~Ll~-~gadi~~~n~  295 (296)
                      .++|++|++ .|+|++++|+
T Consensus       185 ~~~v~~Ll~~~gad~~~~d~  204 (229)
T d1ixva_         185 GDAAVLLVEKYGAEYDLVDN  204 (229)
T ss_dssp             HHHHHHHHHHHCCCSCCCCT
T ss_pred             HHHHHHHHHhcCCCCCCcCC
Confidence            999999997 5999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.73  E-value=3.3e-19  Score=158.83  Aligned_cols=93  Identities=14%  Similarity=0.006  Sum_probs=58.5

Q ss_pred             cChHHHHHHHHcCCHHHHHH---HHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccC--CCCCCHhhHh
Q 022481          197 VNGEGLRDAIKNGDAAAVKK---LLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKN--AQGESPLDCA  271 (296)
Q Consensus       197 ~~~t~Lh~A~~~g~~~~v~~---Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d--~~g~TpL~~A  271 (296)
                      .|.|+||+|+.+|+.+++++   |++.|+++|.+|.+|+||||+|+.+|+.++|++|+++|++++..+  .+|+||||+|
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA  168 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHH
Confidence            34556777777776655444   456667777666667777777777777777777777776666654  3466777777


Q ss_pred             hhcCcHHHHHHHHHcCCC
Q 022481          272 PVTLQYKMRQKMEEDKNN  289 (296)
Q Consensus       272 ~~~g~~~iv~~Ll~~gad  289 (296)
                      +..|+.++|++|+++|++
T Consensus       169 a~~g~~~iv~~Ll~~~~~  186 (346)
T d2ajaa1         169 AENGHLHVLNRLCELAPT  186 (346)
T ss_dssp             HHTTCHHHHHHHHHSCGG
T ss_pred             HHHhhHHHHHHHHHcCCc
Confidence            777777777777766654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.72  E-value=6e-20  Score=163.73  Aligned_cols=111  Identities=10%  Similarity=-0.018  Sum_probs=94.1

Q ss_pred             cccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHcCCCCcccC--CCCCcHHHHHHHcCCHHHHHHHH
Q 022481          174 FSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSEGVDANFCD--KQGMSLLHLAALFNRTDIAFILM  251 (296)
Q Consensus       174 ~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d--~~g~TpLh~A~~~g~~~iv~~LL  251 (296)
                      +..|+..|+++|..+..+.+       |||+|+..|+.++|++|+++|++++..+  .+|+||||+|+.+|+.++|++|+
T Consensus       109 ~~~L~~~~~~in~~~~~g~t-------aL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll  181 (346)
T d2ajaa1         109 LCLLLTSDEIVKVIQAENYQ-------AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC  181 (346)
T ss_dssp             HTTC--CCSSCC--CHHHHH-------HHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCCCcccccCCCCCC-------HHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHH
Confidence            56789999999988765554       9999999999999999999999999876  45999999999999999999999


Q ss_pred             HCCCCC---CccCCCCCCHhhHhhhcCcHHHHHHHHHcCCCCC
Q 022481          252 ESGANM---DCKNAQGESPLDCAPVTLQYKMRQKMEEDKNNVG  291 (296)
Q Consensus       252 ~~ga~~---~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~  291 (296)
                      ++|++.   +..+.+|.|||+.|+..|+.++|++|+++|++++
T Consensus       182 ~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         182 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             HcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            999875   3445667888999999999999999999998654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-16  Score=129.39  Aligned_cols=83  Identities=27%  Similarity=0.272  Sum_probs=80.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhhhcCcHH
Q 022481          199 GEGLRDAIKNGDAAAVKKLLSEGVDANFCDKQGMSLLHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAPVTLQYK  278 (296)
Q Consensus       199 ~t~Lh~A~~~g~~~~v~~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~~~g~~~  278 (296)
                      .++|++|+..+...+++.+++.|.+++.+|..|.||||+|+..|+.+++++||++|+|++.+|.+|+||||+|+..|+.+
T Consensus       145 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~d  224 (228)
T d1k1aa_         145 RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID  224 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred             hhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCcc
Confidence            34999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 022481          279 MRQ  281 (296)
Q Consensus       279 iv~  281 (296)
                      +|+
T Consensus       225 ivk  227 (228)
T d1k1aa_         225 ILR  227 (228)
T ss_dssp             HHT
T ss_pred             ccC
Confidence            885

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.8e-17  Score=103.10  Aligned_cols=49  Identities=24%  Similarity=0.588  Sum_probs=41.3

Q ss_pred             cccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481           12 TRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   68 (296)
Q Consensus        12 ~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   68 (296)
                      ..|+.|+++|++|+||||||.||++||..|+.++        .++.|||+.||....
T Consensus         1 p~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~--------~~~~RvC~~C~~~r~   49 (51)
T d1y02a2           1 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV--------GNGPRLCLLCQRFRA   49 (51)
T ss_dssp             CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC------------CCEEHHHHHHHH
T ss_pred             CCccccCCcccCCccCcccccCCcccCccccCCC--------CCCCeECHhHhhHhh
Confidence            3699999999999999999999999999998764        245799999998764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-15  Score=129.46  Aligned_cols=85  Identities=24%  Similarity=0.325  Sum_probs=78.4

Q ss_pred             CcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q 022481          171 NSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDAAAVKKLLSE-GVDANFCDKQGMSLLHLAALFNRTDIAFI  249 (296)
Q Consensus       171 ~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~~~v~~Ll~~-gadvn~~d~~g~TpLh~A~~~g~~~iv~~  249 (296)
                      ..+++.|++.|++++..+..+.+       |||+|+..|+.++|++||+. |+++|.+|.+|.||||+|+.+|+.+++++
T Consensus       199 ~~i~~~Li~~ga~~n~~~~~g~t-------~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~  271 (285)
T d1wdya_         199 EAITHLLLDHGADVNVRGERGKT-------PLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL  271 (285)
T ss_dssp             HHHHHHHHHTTCCSSCCCTTSCC-------HHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHCCCCCCccCCCCCC-------ccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            34678899999999988877776       99999999999999999984 99999999999999999999999999999


Q ss_pred             HHHCCCCCCccCC
Q 022481          250 LMESGANMDCKNA  262 (296)
Q Consensus       250 LL~~ga~~~~~d~  262 (296)
                      ||++|||+|++|-
T Consensus       272 Ll~~GAd~n~~d~  284 (285)
T d1wdya_         272 LCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHSSCSCCSSC
T ss_pred             HHHCCCCCCcccC
Confidence            9999999999873

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.9e-15  Score=131.42  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=84.0

Q ss_pred             cccCCCCCCCCcCcccccCCCCCCCCCCCCCccccccChHHHHHHHHcCCH-------HHHH------------------
Q 022481          161 NTARSRGSTSNSNFSSIFNPGQVTNGATDKPRMEYEVNGEGLRDAIKNGDA-------AAVK------------------  215 (296)
Q Consensus       161 ~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~~~~~~~t~Lh~A~~~g~~-------~~v~------------------  215 (296)
                      .+.-++..+..++++.|++.|++++..+..+.+       |||+|+..++.       ++++                  
T Consensus       110 ~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~T-------pL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         110 PLHWLTSIANLELVKHLVKHGSNRLYGDNMGES-------CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCC-------HHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCcCCccccc-------HHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            344456677888999999999999998887776       88888765431       2222                  


Q ss_pred             ------------------------HHHHcCC-------------------------------------CCcccCCCCCcH
Q 022481          216 ------------------------KLLSEGV-------------------------------------DANFCDKQGMSL  234 (296)
Q Consensus       216 ------------------------~Ll~~ga-------------------------------------dvn~~d~~g~Tp  234 (296)
                                              ++++.+.                                     .+|.+|..|+||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~Tp  262 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  262 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCH
Confidence                                    2222221                                     168889999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHhhHhh
Q 022481          235 LHLAALFNRTDIAFILMESGANMDCKNAQGESPLDCAP  272 (296)
Q Consensus       235 Lh~A~~~g~~~iv~~LL~~ga~~~~~d~~g~TpL~~A~  272 (296)
                      ||+|++.|+.++|++||++||+++.+|..|+|||++|+
T Consensus       263 Lh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         263 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999999999999999999996

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=1.7e-11  Score=91.89  Aligned_cols=61  Identities=16%  Similarity=0.359  Sum_probs=49.5

Q ss_pred             CCCCCccccccccccccccc-cccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481            4 EPPAFQEATRCDVCKCSFNT-FRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   68 (296)
Q Consensus         4 ~w~~~~~~~~C~~C~~~f~~-~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   68 (296)
                      .|..+..+..|+.|++.|++ +.|+|||+.||.+||..|+...    ..+...++|+|..|+....
T Consensus        41 ~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~----~~~~~~~~w~C~~C~k~re  102 (124)
T d1zbdb_          41 KNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET----SNNRPHPVWLCKICLEQRE  102 (124)
T ss_dssp             HTCCSCSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC----CCSSSSCCEEEHHHHHHHH
T ss_pred             HhhhccCCCcCcccCCcccCCCCCCCcCccCCcccccCCCCCc----cCCCCCCCEECccCcchHH
Confidence            36677788999999999995 6799999999999999997432    2223468999999998754

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.33  E-value=0.0014  Score=41.04  Aligned_cols=35  Identities=37%  Similarity=0.842  Sum_probs=28.2

Q ss_pred             CCCCccccccccccccccccccccccccccceEcCCCC
Q 022481            5 PPAFQEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHS   42 (296)
Q Consensus         5 w~~~~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~   42 (296)
                      ..+......|..|.++.+++.  ..|| ||.+||..+-
T Consensus         9 ~~~~~k~~RC~~C~KKl~l~~--~~Cr-Cg~~FC~~HR   43 (64)
T d1wfha_           9 PSPPQRPNRCTVCRKRVGLTG--FMCR-CGTTFCGSHR   43 (64)
T ss_dssp             CCCCSSCCCCTTTCCCCCTTC--EECS-SSCEECTTTC
T ss_pred             CCCCCCCCcChhhCCCcccee--eecc-CCCEehhhcC
Confidence            344556789999999999873  7897 9999998764

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.27  E-value=0.0016  Score=42.12  Aligned_cols=31  Identities=29%  Similarity=0.759  Sum_probs=25.6

Q ss_pred             ccccccccccccccccccccccccccceEcCCCC
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHS   42 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~   42 (296)
                      .....|..|+++.+++  -..|| ||.+||..+-
T Consensus        23 ~k~~RC~~C~KKl~l~--~~~Cr-Cg~~FC~~HR   53 (74)
T d1wfla_          23 PKKNRCFMCRKKVGLT--GFDCR-CGNLFCGLHR   53 (74)
T ss_dssp             SCTTBCSSSCCBCGGG--CEECT-TSCEECSSSC
T ss_pred             CCCCcChhhCCcccce--eeEcc-CCCEehhhcC
Confidence            3457899999999987  47897 9999998763

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.69  E-value=0.0033  Score=41.80  Aligned_cols=30  Identities=27%  Similarity=0.720  Sum_probs=25.2

Q ss_pred             ccccccccccccccccccccccccceEcCCCC
Q 022481           11 ATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHS   42 (296)
Q Consensus        11 ~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~   42 (296)
                      ...|..|.++.+++. .+.|| ||.+||..+-
T Consensus        25 ~~RC~~C~KKl~l~~-~~~Cr-Cg~~FC~~HR   54 (85)
T d1wffa_          25 MKHCFLCGKKTGLAT-SFECR-CGNNFCASHR   54 (85)
T ss_dssp             CCBCSSSCCBCSSSS-CEECT-TCCEECTTTC
T ss_pred             CCcChhcCCeecCCc-CeecC-CCCEehhhcC
Confidence            358999999999875 47997 9999998764

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.40  E-value=0.0046  Score=39.89  Aligned_cols=31  Identities=39%  Similarity=0.838  Sum_probs=24.9

Q ss_pred             ccccccccccccccccccccccccccceEcCCCC
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHS   42 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~   42 (296)
                      .....|..|+++.+++  .+-|| ||.+||..+-
T Consensus        23 ~kk~RC~~C~KKl~l~--~~~Cr-Cg~~FC~~HR   53 (74)
T d1wfpa_          23 STATRCLSCNKKVGVT--GFKCR-CGSTFCGTHR   53 (74)
T ss_dssp             CCCCBCSSSCCBCTTT--CEECT-TSCEECTTTC
T ss_pred             CCCCcChhcCCccCCC--ceecC-CCChhhhccC
Confidence            3467899999999987  36675 9999988763

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.0014  Score=40.26  Aligned_cols=32  Identities=16%  Similarity=0.482  Sum_probs=25.9

Q ss_pred             cccccccccccccccccccccccccceEcCCCC
Q 022481           10 EATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHS   42 (296)
Q Consensus        10 ~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~   42 (296)
                      ....|..|+++|.. .-++.|..|+++||.+|=
T Consensus        14 ~~~~C~gC~~~l~~-~~~y~C~~C~~~FC~dCD   45 (59)
T d1z60a1          14 GERFCYGCQGELKD-QHVYVCAVCQNVFCVDCD   45 (59)
T ss_dssp             SCCEETTTTEECTT-SEEECCTTTTCCBCHHHH
T ss_pred             CCCCccCCCCcCCC-CceEECcCCCCccccccc
Confidence            35679999999863 235889999999999884

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=88.68  E-value=0.011  Score=36.66  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=41.0

Q ss_pred             CCCccccccccccccccc-cccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481            6 PAFQEATRCDVCKCSFNT-FRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   68 (296)
Q Consensus         6 ~~~~~~~~C~~C~~~f~~-~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   68 (296)
                      +.+++...|.+|...++- ....-.|+.|+++|+..|...++..      +..+.|..|...++
T Consensus         1 ~eded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~------~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           1 MEDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI------SRNTACQICGVVYN   58 (60)
T ss_dssp             CTTCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH------HTCSBCTTTCCBCC
T ss_pred             CCCCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhh------CCCCCCcccCCeee
Confidence            367888999999988763 2234478889999999998877533      12346888876543

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=86.44  E-value=0.16  Score=30.47  Aligned_cols=49  Identities=16%  Similarity=0.342  Sum_probs=33.5

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchh
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFN   65 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~   65 (296)
                      ++...|.+|-..|..-..-.....||.+||..|...++.        ....|..|..
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~--------~~~~CP~CR~   51 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG--------SHSTCPLCRL   51 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT--------TCCSCSSSCC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHH--------hCCcCCCCCC
Confidence            345679999999975433334567999999999876542        1235766654

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=85.57  E-value=0.17  Score=31.74  Aligned_cols=58  Identities=21%  Similarity=0.442  Sum_probs=41.3

Q ss_pred             cccccccccccccccccccccccce-----EcCCCCCCceecCCCCCCCceeccccchhhhcccC
Q 022481           12 TRCDVCKCSFNTFRRRHHCRCCGRT-----LCHEHSSDQMTLPQFGIHTNVRVCADCFNSSSRTG   71 (296)
Q Consensus        12 ~~C~~C~~~f~~~~r~hhCr~Cg~~-----~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~~~~   71 (296)
                      -.|..|+.....-.+..||..|..-     +|.+|-..-..|-.=|  ---..|..|++.+++.+
T Consensus         3 ~~CP~C~~eL~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACG--AvdYFC~~cn~LiSKkr   65 (71)
T d2jnea1           3 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACG--AVDYFCQHGHGLISKKR   65 (71)
T ss_dssp             CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETT--EEEEEETTTTEEECTTT
T ss_pred             CcCCCccCcccccCCCEehhhhhhhheeEEeCCccccHHHHHHhcc--chhhhhccCCceeEeee
Confidence            3688999988877789999999865     7888876554443333  23456888888776653

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=84.74  E-value=0.18  Score=31.68  Aligned_cols=49  Identities=16%  Similarity=0.270  Sum_probs=34.9

Q ss_pred             ccccccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481            9 QEATRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   68 (296)
Q Consensus         9 ~~~~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   68 (296)
                      ..++.|.+|...|.-   ..-+..||.+||..|...++..        .+-|..|...+.
T Consensus         3 ~~~d~C~IC~~~~~~---~~~~~~C~H~Fc~~Ci~~w~~~--------~~~CP~CR~~i~   51 (68)
T d1chca_           3 TVAERCPICLEDPSN---YSMALPCLHAFCYVCITRWIRQ--------NPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCCSSCCSCCCS---CEEETTTTEEESTTHHHHHHHH--------SCSTTTTCCCCC
T ss_pred             CCCCCCccCCcCccC---CcEEeCCCCcCcHHHHHHHHHh--------CCcCCCCCcchH
Confidence            356789999988853   2346789999999998766432        345888865543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.08  E-value=0.19  Score=33.98  Aligned_cols=44  Identities=25%  Similarity=0.569  Sum_probs=30.4

Q ss_pred             cccccccccccccccccccccccceEcCCCCCCceecCCCCCCCceeccccchhhhc
Q 022481           12 TRCDVCKCSFNTFRRRHHCRCCGRTLCHEHSSDQMTLPQFGIHTNVRVCADCFNSSS   68 (296)
Q Consensus        12 ~~C~~C~~~f~~~~r~hhCr~Cg~~~C~~c~~~~~~~~~~~~~~~~rvC~~C~~~~~   68 (296)
                      -.|.+|...|.   .-..+..||++||..|...++     .  .   -|-.|...+.
T Consensus        23 l~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~-----~--~---~CP~Cr~~~~   66 (97)
T d1jm7b_          23 LRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCI-----G--T---GCPVCYTPAW   66 (97)
T ss_dssp             TSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGT-----T--T---BCSSSCCBCS
T ss_pred             CCCccCCchhh---cCceeCCCCCchhHHHHHHHH-----h--c---cccccCCcCc
Confidence            47999988774   334566799999999976543     1  1   2888865543