Citrus Sinensis ID: 022501

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MDVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQKLCNNKLPPMVPFSSRFLYLRLLCHQ
Secondary Structure (PSIPRED)
ccccccccccEEEEEcccccccccccccccccccccEEEEEEcccccccHHHHcccccccEEEEEEcccEEEEccccccccccccccccEEEEccccccEEEcccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEcccccEEEEcccccccccccccccccEEEEcccccccEEcccccccccccccEEEEEcccccccccccccccccccEEEEccccccccccccccHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccHHEEEccHHHHHHHHcccccHHHcHcccEEEEEccccccccHHHHHHcccccEEEEEccccEEEEccccccccccccccccEEEHcccccHEEcccccccHHHHHHHHcEEEEcccccHHHHccccccccccEEEEEEccccHHHcccHHHHHHHHHHcEEEEcccHHHHHEEEccccccccEEEcccccEEEEcccHcHcHccccccccccccccEEEEEccccEEEEccccccccccEEEEEEcccccEcccccccHHHHHHHHccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDVQVIANLEElklsgkditmichdhlpkhlfqNLKSLEivsdksdnfsigFLQRFHNVERLKLRNSSYKEIfsngevekQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLinlvpssasfenlTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIIssegdveedEIVFSRLKWLSLECldsltsfcsgnctfkfpsledlfvidcpkmmifsfgvlstprlREVRknwgldkgcwegnLNTTIQKLcnnklppmvpfssRFLYLRLLCHQ
Flexible Loop (DISEMBL)
MDVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIissegdveedEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFsfgvlstprlREVRKNwgldkgcweGNLNTTIQKLCNNKLPPMVPFSSRFLYLRLLCHQ
Low Complexity Region (SEG)
MDVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQKLCNNKLPPMVPFSSRFLYLRLLCHQ
Disordered region (IsUnstruct)
****VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQKLCNNKLPPMVPFSSRFLYLRLLC**
Disordered Region (DISOPRED)
MDVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFS**********LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQKLCNNKLPPMVPFSSRFLYLRLLCH*
Disordered Region (DISEMBL)
MDVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQKLCNNKLPPMVPFSSRFLYLRLLCHQ
Disordered Region (DISPRO)
MDVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQKLCNNKLPPMVPFSSRFLYLRLLCHQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQKLCNNKLPPMVPFSSRFLYLRLLCHQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q8RXS5	888	Probable disease resistan	yes	no	0.402	0.134	0.273	0.0006

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 9/128 (7%)

Query: 131 VPSSASF-ENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEE 189
           +P++ +F  NL+ + + +C RL++L     A +L  L   R+     + E+I+ E   ++
Sbjct: 731 IPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVL---RVISASDLKEVINKEKAEQQ 787

Query: 190 DEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPR--- 246
           + I F  LK L LE +  L     G     FP L+ + V  C ++        S PR   
Sbjct: 788 NLIPFQELKELRLENVQMLKHIHRG--PLPFPCLQKILVNGCSELRKLPLNFTSVPRGDL 845

Query: 247 LREVRKNW 254
           + E  K W
Sbjct: 846 VIEAHKKW 853

Probable disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
224110992	2359	cc-nbs-lrr resistance protein [Populus t	0.915	0.114	0.432	4e-52
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.912	0.109	0.430	6e-51
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.885	0.154	0.431	8e-44
302143647	759	unnamed protein product [Vitis vinifera]	0.898	0.350	0.421	1e-43
359488108	1436	PREDICTED: disease resistance protein At	0.888	0.183	0.404	3e-43
302143659	922	unnamed protein product [Vitis vinifera]	0.888	0.285	0.404	4e-43
359488101	1677	PREDICTED: disease resistance protein At	0.891	0.157	0.405	2e-42
358344279	1053	Rpp4 candidate [Medicago truncatula] gi|	0.952	0.267	0.381	5e-42
296087869	1711	unnamed protein product [Vitis vinifera]	0.881	0.152	0.421	7e-42
359488025	1781	PREDICTED: uncharacterized protein LOC10	0.881	0.146	0.421	8e-42

>gi|224110992|ref|XP_002332999.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834484|gb|EEE72961.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 125/289 (43%), Positives = 183/289 (63%), Gaps = 18/289 (6%)

Query: 2    DVQVIANLEELKLSGKD--ITMICHDHLPKHLFQNLKSLEIVS--DKSDNFSIGFLQRFH 57
            D ++I+NLEEL L+G+D   ++I     P   +  LK +++ +   K D    GFLQ   
Sbjct: 1363 DEEIISNLEELSLNGEDPATSIIWCCQFPGKFYSRLKVIKLKNFYGKLDPIPFGFLQSIR 1422

Query: 58   NVERLKLRNSSYKEIFSN-GEVEKQAG------------MLTQIKSLKLWELSNLLHIWE 104
            N+E L +  SS+++IF N G V+K               M  ++K+L +  + ++ HIWE
Sbjct: 1423 NLETLSVSCSSFEKIFLNEGCVDKDEDIRGPVDSDEYTRMRARLKNLVIDSVQDITHIWE 1482

Query: 105  QCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV 164
              Y+L SV QNLE+L++  CN+L+NL PS+  F NL TL+V  C  L NL++SSTAKSL 
Sbjct: 1483 PKYRLISVVQNLESLKMQSCNSLVNLAPSTVLFHNLETLDVHSCHGLSNLLTSSTAKSLG 1542

Query: 165  CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLE 224
             L+KL +  CKL+TEI++ +G    D+I+FS+L++L L  L++LTSFC GN  F FPSL+
Sbjct: 1543 QLVKLIVVNCKLVTEIVAKQGGEINDDIIFSKLEYLELVRLENLTSFCPGNYNFIFPSLK 1602

Query: 225  DLFVIDCPKMMIFSFGVLSTPRLREVR-KNWGLDKGCWEGNLNTTIQKL 272
             + V  CPKM IFS G+ STP+L+ V  K   +++ CW GNLN T+Q+L
Sbjct: 1603 GMVVEQCPKMRIFSQGISSTPKLQGVYWKKDSMNEKCWHGNLNATLQQL 1651

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  207 bits (526), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 118/274 (43%), Positives = 171/274 (62%), Gaps = 4/274 (1%)

Query: 3    VQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEI--VSDKSDNFSIGFLQRFHNVE 60
             QV+++L+ L LS K+  MI    LP  LF  L+ L++    D+S  F    LQRF NVE
Sbjct: 1287 TQVVSHLKSLSLSNKETMMIRQAQLPASLFHKLERLDLQCFHDRSSYFPFDLLQRFQNVE 1346

Query: 61   RLKLRNSSYKEIFSNGEV--EKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLET 118
             L L  S+ +++F    V  +    +L+ ++ L L  L ++  IW Q  + +   QNLET
Sbjct: 1347 TLLLTCSNVEDLFPYPLVGEDNNVRILSNLRHLTLNSLRDIRRIWNQECQPNQSLQNLET 1406

Query: 119  LEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMT 178
            LE+ +C  LINL PSSA+F+NL +LEV  C  L +L++S+TAKSLV L ++++  CK++ 
Sbjct: 1407 LEVMYCKKLINLAPSSATFKNLASLEVHECNGLVSLLTSTTAKSLVQLGEMKVSNCKMLR 1466

Query: 179  EIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS 238
            EI+++EGD  E EI FS+L+ L L+ L  LT+ CS NC  KFPSLE+L V  CP+M  FS
Sbjct: 1467 EIVANEGDEMESEITFSKLESLRLDDLTRLTTVCSVNCRVKFPSLEELIVTACPRMEFFS 1526

Query: 239  FGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQKL 272
             G+++ P+L +V      DK    G+LNTT Q+L
Sbjct: 1527 HGIITAPKLEKVSLTKEGDKWRSVGDLNTTTQQL 1560

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  183 bits (465), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/269 (43%), Positives = 157/269 (58%), Gaps = 7/269 (2%)

Query: 9    LEELKLSGKDITMICHDHLPKHLFQNLKSLEI--VSDKSDNFSIGFLQRFHNVERLKLRN 66
            LEEL L     T I  +  P   F  L+ L +    D         LQR HN+E+L +R 
Sbjct: 1335 LEELILDDNGNTEIWQEQFPMDSFPRLRCLNVRGYGDILVVIPSFMLQRLHNLEKLDVRR 1394

Query: 67   -SSYKEIFS--NGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWW 123
             SS KEIF     + E QA  L +++ + L  L  L H+W++  K     Q+LE+LE+W 
Sbjct: 1395 CSSVKEIFQLEGLDEENQAQRLGRLREIILGSLPALTHLWKENSKSGLDLQSLESLEVWS 1454

Query: 124  CNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISS 183
            CN+LI+LVP S SF+NL TL+V  C  L++L+S S AKSLV L KL+I G  +M E++++
Sbjct: 1455 CNSLISLVPCSVSFQNLDTLDVWSCSSLRSLISPSVAKSLVKLRKLKIGGSHMMEEVVAN 1514

Query: 184  EGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLS 243
            EG    DEI F +L+ + L CL +LTSF SG   F FPSLE + V +CPKM IFS   ++
Sbjct: 1515 EGGEVVDEIAFYKLQHMVLLCLPNLTSFNSGGYIFSFPSLEHMVVEECPKMKIFSPSFVT 1574

Query: 244  TPRLREVRKNWGLDKGCWEGNLNTTIQKL 272
            TP+L  V      D+  W  +LNTTI  L
Sbjct: 1575 TPKLERVE--VADDEWHWHNDLNTTIHYL 1601

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (462), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 115/273 (42%), Positives = 162/273 (59%), Gaps = 7/273 (2%)

Query: 5   VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVS--DKSDNFSIGFLQRFHNVERL 62
            +  LEEL L+    T I  +  P   F  L+ L++    D         LQR HN+E+L
Sbjct: 468 ALPYLEELILNDNGNTEIWQEQFPMDSFPRLRYLKVYGYIDILVVIPSFMLQRSHNLEKL 527

Query: 63  KLRN-SSYKEIFS--NGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETL 119
            +R  SS KEIF     + E QA  L +++ + L +L  L H+W++  K     Q+LE+L
Sbjct: 528 NVRRCSSVKEIFQLEGLDEENQAQRLGRLREIWLRDLPALTHLWKENSKSILDLQSLESL 587

Query: 120 EIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTE 179
           E+W C++LI+LVP S SF+NL TL+V  C  L++L+S S AKSLV L KL+I G  +M E
Sbjct: 588 EVWNCDSLISLVPCSVSFQNLDTLDVWSCSNLRSLISPSVAKSLVKLRKLKIGGLHMMEE 647

Query: 180 IISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF 239
           ++++EG    DEI F +L+ + L CL +LTSF SG   F FPSLE + V +CPKM IFS 
Sbjct: 648 VVANEGGEAVDEIAFYKLQHMVLLCLPNLTSFNSGGYIFSFPSLEHMVVEECPKMKIFSP 707

Query: 240 GVLSTPRLREVRKNWGLDKGCWEGNLNTTIQKL 272
            +++TP+L  V      D+  W  +LNTTI  L
Sbjct: 708 SLVTTPKLERVE--VADDEWHWHNDLNTTIHNL 738

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  181 bits (459), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/272 (40%), Positives = 161/272 (59%), Gaps = 9/272 (3%)

Query: 5    VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSI---GFLQRFHNVER 61
               NLEEL+L     T I  +  P   F  L+ L  V D  D   +     LQR HN+E 
Sbjct: 1131 AFPNLEELRLGDNRDTEIWPEQFPVDSFPRLRVLH-VHDYRDILVVIPSFMLQRLHNLEV 1189

Query: 62   LKLRN-SSYKEIFS--NGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLET 118
            LK+ + SS KE+F     + E QA  L +++ ++L +L  L  +W++  +     Q+LE+
Sbjct: 1190 LKVGSCSSVKEVFQLEGLDEENQAKRLGRLREIELHDLPGLTRLWKENSEPGLDLQSLES 1249

Query: 119  LEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMT 178
            LE+W C +LINLVPSS SF+NL TL+V  C  L++L+S S AKSLV L  L+I    +M 
Sbjct: 1250 LEVWNCGSLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGRSDMME 1309

Query: 179  EIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS 238
            E++++EG    DEI F +L+ + L  L +LTSF SG   F FPSLE + V +CPKM +FS
Sbjct: 1310 EVVANEGGEATDEITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMKMFS 1369

Query: 239  FGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQ 270
              +++ PRL+ ++   G ++  W+ +LNT I 
Sbjct: 1370 PSLVTPPRLKRIK--VGDEEWPWQDDLNTAIH 1399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143659|emb|CBI22412.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/272 (40%), Positives = 161/272 (59%), Gaps = 9/272 (3%)

Query: 5   VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSI---GFLQRFHNVER 61
              NLEEL+L     T I  +  P   F  L+ L  V D  D   +     LQR HN+E 
Sbjct: 644 AFPNLEELRLGDNRDTEIWPEQFPVDSFPRLRVLH-VHDYRDILVVIPSFMLQRLHNLEV 702

Query: 62  LKLRN-SSYKEIFS--NGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLET 118
           LK+ + SS KE+F     + E QA  L +++ ++L +L  L  +W++  +     Q+LE+
Sbjct: 703 LKVGSCSSVKEVFQLEGLDEENQAKRLGRLREIELHDLPGLTRLWKENSEPGLDLQSLES 762

Query: 119 LEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMT 178
           LE+W C +LINLVPSS SF+NL TL+V  C  L++L+S S AKSLV L  L+I    +M 
Sbjct: 763 LEVWNCGSLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKIGRSDMME 822

Query: 179 EIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS 238
           E++++EG    DEI F +L+ + L  L +LTSF SG   F FPSLE + V +CPKM +FS
Sbjct: 823 EVVANEGGEATDEITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMKMFS 882

Query: 239 FGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQ 270
             +++ PRL+ ++   G ++  W+ +LNT I 
Sbjct: 883 PSLVTPPRLKRIK--VGDEEWPWQDDLNTAIH 912

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 158/271 (58%), Gaps = 7/271 (2%)

Query: 5    VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIG--FLQRFHNVERL 62
               NLEEL L     T I  D LP   F  L+ L++  ++     I    L   HN+E L
Sbjct: 1245 AFPNLEELALGQNKDTEIWPDQLPVDCFPRLRVLDVCENRDILVVIPSFMLHILHNLEVL 1304

Query: 63   KLRN-SSYKEIFS--NGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETL 119
             +   SS KE+F     + E QA  L +++ ++L +L  L H+W++  K     Q+LE+L
Sbjct: 1305 NVVECSSVKEVFQLEGLDEENQAKRLGRLREIRLHDLPALTHLWKENSKSGLDLQSLESL 1364

Query: 120  EIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTE 179
            E W C++LINLVPS  SF+NL TL+V  C  L++L+S S AKSLV L  L+I    +M E
Sbjct: 1365 EEWNCDSLINLVPSPVSFQNLATLDVHSCGSLRSLISPSVAKSLVKLKTLKIRRSDMMEE 1424

Query: 180  IISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF 239
            ++++EG    DEI F +L+ + L  L +LTSF SG   F FPSLE + V +CPKM +FS 
Sbjct: 1425 VVANEGGEAIDEITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMKMFSP 1484

Query: 240  GVLSTPRLREVRKNWGLDKGCWEGNLNTTIQ 270
             +++TPRL  ++   G D+  W+ + NTTI 
Sbjct: 1485 SLVTTPRLERIK--VGDDEWPWQDDPNTTIH 1513

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344279|ref|XP_003636218.1| Rpp4 candidate [Medicago truncatula] gi|355502153|gb|AES83356.1| Rpp4 candidate [Medicago truncatula]

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 113/296 (38%), Positives = 177/296 (59%), Gaps = 14/296 (4%)

Query: 2   DVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEI--VSDKSDNFSIGFLQRFHNV 59
           DV+V+AN+E L L+ KD  MI +    +  F N++ + +    ++   F   FL+   N+
Sbjct: 251 DVKVLANVESLSLNKKDFGMILNSQYSRVQFNNIRHIIVGEFYNEEATFPYWFLKNVPNL 310

Query: 60  ERLKLRNSSYKEIFSNGEV---EKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNL 116
           ERL ++ SS+ E+F   ++   EK+  ++ Q++ L LW L+ L  I ++  ++D V   L
Sbjct: 311 ERLLVQWSSFTELFQGEKIIRTEKEPEIIPQLRKLTLWNLTRLQCICKEGVQIDPVLHFL 370

Query: 117 ETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKL 176
           E++ ++ C++LI LVPSS +F  +T LEV+ C  LKNL++ STAKSLV L  ++I  C  
Sbjct: 371 ESIWVYQCSSLIMLVPSSVTFNYMTYLEVTNCNGLKNLITHSTAKSLVKLTTMKIKMCNC 430

Query: 177 MTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMI 236
           + +I++ + D E ++IVF  L+ L L  L  L  FCS  C  KFP LE + V +CP+M +
Sbjct: 431 LEDIVNGKED-EINDIVFCSLQTLELISLQRLCRFCSCPCPIKFPLLEVIVVKECPRMEL 489

Query: 237 FSFGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQKLCNNKLPPMVPFSSRFLYLRL 292
           FS GV +T  L+ V+ + G     WEG+LN TI+K+  +K    V F  +F YL L
Sbjct: 490 FSLGVTNTTNLQNVQTDEG---NHWEGDLNRTIKKMFCDK----VAF-GKFKYLAL 537

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087869|emb|CBI35152.3| unnamed protein product [Vitis vinifera]

 Score =  177 bits (448), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 116/275 (42%), Positives = 160/275 (58%), Gaps = 14/275 (5%)

Query: 1    MDVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIG--FLQRFHN 58
            +DV    NLEEL+L     T I  +  P   F  L+ L++   +     I    LQR HN
Sbjct: 1423 LDV-AFPNLEELELGLNRDTEIWPEQFPMDSFPRLRVLDVYDYRDILVVIPSFMLQRLHN 1481

Query: 59   VERLKL-RNSSYKEIFS--NGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQN 115
            +E LK+ R SS +E+F     + E QA  L Q++ +KL +L  L H+W++  K     Q+
Sbjct: 1482 LEVLKVGRCSSVEEVFQLEGLDEENQAKRLGQLREIKLDDLPGLTHLWKENSKPGLDLQS 1541

Query: 116  LETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCK 175
            LE+LE+  C  LINLVPSS SF+NL TL+V  C  L++L+S S AKSLV L  L+I G  
Sbjct: 1542 LESLEVLDCKKLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKICGSD 1601

Query: 176  LMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMM 235
            +M E++++EG    DEI F +L+ + L  L +LTSF SG   F FPSLE + V +CPKM 
Sbjct: 1602 MMEEVVANEGGEATDEITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMK 1661

Query: 236  IFSFGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQ 270
            +FS      PRL  ++   G DK   + +LNTTI 
Sbjct: 1662 MFS------PRLERIK--VGDDKWPRQDDLNTTIH 1688

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488025|ref|XP_003633688.1| PREDICTED: uncharacterized protein LOC100852821 [Vitis vinifera]

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 116/275 (42%), Positives = 160/275 (58%), Gaps = 14/275 (5%)

Query: 1    MDVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIG--FLQRFHN 58
            +DV    NLEEL+L     T I  +  P   F  L+ L++   +     I    LQR HN
Sbjct: 1493 LDV-AFPNLEELELGLNRDTEIWPEQFPMDSFPRLRVLDVYDYRDILVVIPSFMLQRLHN 1551

Query: 59   VERLKL-RNSSYKEIFS--NGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQN 115
            +E LK+ R SS +E+F     + E QA  L Q++ +KL +L  L H+W++  K     Q+
Sbjct: 1552 LEVLKVGRCSSVEEVFQLEGLDEENQAKRLGQLREIKLDDLPGLTHLWKENSKPGLDLQS 1611

Query: 116  LETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCK 175
            LE+LE+  C  LINLVPSS SF+NL TL+V  C  L++L+S S AKSLV L  L+I G  
Sbjct: 1612 LESLEVLDCKKLINLVPSSVSFQNLATLDVQSCGSLRSLISPSVAKSLVKLKTLKICGSD 1671

Query: 176  LMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMM 235
            +M E++++EG    DEI F +L+ + L  L +LTSF SG   F FPSLE + V +CPKM 
Sbjct: 1672 MMEEVVANEGGEATDEITFYKLQHMELLYLPNLTSFSSGGYIFSFPSLEQMLVKECPKMK 1731

Query: 236  IFSFGVLSTPRLREVRKNWGLDKGCWEGNLNTTIQ 270
            +FS      PRL  ++   G DK   + +LNTTI 
Sbjct: 1732 MFS------PRLERIK--VGDDKWPRQDDLNTTIH 1758

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.679	0.165	0.292	5.8e-06
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.699	0.271	0.258	0.00044
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.783	0.258	0.268	0.0007
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.405	0.132	0.286	0.00071

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 67/229 (29%), Positives = 101/229 (44%)

Query:     9 LEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSS 68
             L EL + G  +  +  +  P    +NLK +++ S K+    +  L    N+E L L   S
Sbjct:   653 LVELNMWGSKLEKLWEEIQP---LRNLKRMDLFSSKNLK-ELPDLSSATNLEVLNLNGCS 708

Query:    69 YKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLI 128
                  S  E+    G  T++  LKL ELS    + E    + +   NL+T++   C NL+
Sbjct:   709 -----SLVELPFSIGNATKL--LKL-ELSGCSSLLELPSSIGNAI-NLQTIDFSHCENLV 759

Query:   129 NLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVE 188
              L  S  +  NL  L++S C  LK L SS    +   L KL +  C  + E+ SS G+  
Sbjct:   760 ELPSSIGNATNLKELDLSCCSSLKELPSS--IGNCTNLKKLHLICCSSLKELPSSIGNC- 816

Query:   189 EDEIVFSRLKWLSLECLDSLTSFCS--GNCTFKFPSLEDLFVIDCPKMM 235
                   + LK L L C  SL    S  GN      +LE L +  C  ++
Sbjct:   817 ------TNLKELHLTCCSSLIKLPSSIGNAI----NLEKLILAGCESLV 855

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00044, P = 0.00044
 Identities = 58/224 (25%), Positives = 96/224 (42%)

Query:    34 NLKSLEIVSDK--SDNFSIGFLQRFHNVERLKLRNS---SYKEIFSNG-EVEKQAGMLTQ 87
             +L+ L ++  K   D   +  LQ+  N++ L +  S   S  +  +N   +    G L +
Sbjct:   517 SLRLLRLLGSKVHGDASVLKELQKLQNLQHLAITLSAELSLNQRLANLISILGIEGFLQK 576

Query:    88 IKSLK-LWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVS 146
                L  L  + NL  +W +    +S F  ++  E    ++ + + P    F NL+ L +S
Sbjct:   577 PFDLSFLASMENLSSLWVK----NSYFSEIKCRESETASSYLRINPKIPCFTNLSRLGLS 632

Query:   147 YCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIV-FSRLKWLSLECL 205
              C  +K+L     A +LV L    I+  + + EII+ E       I  F +L+ L L  L
Sbjct:   633 KCHSIKDLTWILFAPNLVYLY---IEDSREVGEIINKEKATNLTSITPFLKLERLILYNL 689

Query:   206 DSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLRE 249
               L S         FP L  + V+DCPK+        S P + E
Sbjct:   690 PKLESIYWS--PLHFPRLLIIHVLDCPKLRKLPLNATSVPLVEE 731

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00070, P = 0.00070
 Identities = 68/253 (26%), Positives = 112/253 (44%)

Query:     9 LEELK-LSGKDITM---ICHDHLPKHLFQNLKSLEIVSDK--SDNFSIGFLQRFHNVERL 62
             L+ELK L+  D+T    +C       L  +L+ L ++  K   D   +  LQ+  N++ L
Sbjct:   600 LKELKKLTFLDLTYTDRLCSISGISRLL-SLRLLRLLGSKVHGDASVLKELQQLQNLQEL 658

Query:    63 KLRNSSYKEIFS-NGEVEKQAGMLTQIKSL-KLWELSNLLHIWEQCYKL---DSVFQNLE 117
              +  S+  E+ S +  + K    L     L K ++LS L  + E    L   +S F  ++
Sbjct:   659 AITVSA--ELISLDQRLAKLISNLCIEGFLQKPFDLSFLASM-ENLSSLRVENSYFSEIK 715

Query:   118 TLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLM 177
               E    ++ + + P    F NL+ LE+  C  +K+L     A +LV L+   I+  + +
Sbjct:   716 CRESETESSYLRINPKIPCFTNLSRLEIMKCHSMKDLTWILFAPNLVVLL---IEDSREV 772

Query:   178 TEIISSEGDVEEDEIV-FSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMI 236
              EII+ E       I  F +L+WL L  L  L S         FP L  + V +CPK+  
Sbjct:   773 GEIINKEKATNLTSITPFLKLEWLILYNLPKLESIYWS--PLPFPVLLTMDVSNCPKLRK 830

Query:   237 FSFGVLSTPRLRE 249
                   S  ++ E
Sbjct:   831 LPLNATSVSKVEE 843

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 0.00071, P = 0.00071
 Identities = 37/129 (28%), Positives = 60/129 (46%)

Query:   115 NLETLEIWWCNNLINLVPSSAS---FENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRI 171
             +LE L +   +NL  +  +S S     N+  + +S+C +LKN+   S  + L  L  + +
Sbjct:   746 SLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNV---SWVQKLPKLEVIEL 802

Query:   172 DGCKLMTEIISS-EGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVID 230
               C+ + E+IS  E    ED  +F  LK L    L  L S       F F  +E L + +
Sbjct:   803 FDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLPELNSILPSR--FSFQKVETLVITN 860

Query:   231 CPKMMIFSF 239
             CP++    F
Sbjct:   861 CPRVKKLPF 869


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      296       296   0.00093  115 3  11 22  0.49    33
                                                     33  0.44    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  233 KB (2126 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.52u 0.10s 27.62t   Elapsed:  00:00:14
  Total cpu time:  27.52u 0.10s 27.62t   Elapsed:  00:00:14
  Start:  Fri May 10 03:01:24 2013   End:  Fri May 10 03:01:38 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-04

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 10/91 (10%)

Query: 85  LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFEN-LTTL 143
           LT ++++ L    NL  I +      S+  NLETL++  C++L+ L PSS  + N L  L
Sbjct: 633 LTGLRNIDLRGSKNLKEIPDL-----SMATNLETLKLSDCSSLVEL-PSSIQYLNKLEDL 686

Query: 144 EVSYCQRLKNLVSSSTAKSLVCLMKLRIDGC 174
           ++S C+ L+ L +    KSL     L + GC
Sbjct: 687 DMSRCENLEILPTGINLKSLYR---LNLSGC 714

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.72
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.63
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.58
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.39
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.29
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.21
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.17
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.1
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.07
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.07
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.06
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.01
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.01
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.81
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.78
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.77
KOG4341	483	consensus F-box protein containing LRR [General fu	98.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.7
KOG4341	483	consensus F-box protein containing LRR [General fu	98.67
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.59
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.4
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.39
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.35
PRK15386	426	type III secretion protein GogB; Provisional	98.24
PRK15386	426	type III secretion protein GogB; Provisional	98.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.81
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.77
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.76
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.73
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.73
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.72
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.71
PLN03150	623	hypothetical protein; Provisional	97.63
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.62
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.62
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.61
PLN03150	623	hypothetical protein; Provisional	97.55
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.27
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.09
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.29
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.99
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.81
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.78
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.77
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.12
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.95
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.91
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	93.75
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.47
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.12
smart00370	26	LRR Leucine-rich repeats, outliers.	91.53
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.53
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	91.04
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	87.92
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.79
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	80.27

>PLN03210 Resistant to P

Probab=99.74  E-value=2.1e-17  Score=164.96  Aligned_cols=204  Identities=21%  Similarity=0.278  Sum_probs=110.1

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCC-CccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKS-DNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .+|++|++.+++++.++ ..+.  .+++|+.|+++++.. ..+|.  +..+++|++|++.+|..     +..++.....+
T Consensus       611 ~~L~~L~L~~s~l~~L~-~~~~--~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~-----L~~lp~si~~L  680 (1153)
T PLN03210        611 ENLVKLQMQGSKLEKLW-DGVH--SLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSS-----LVELPSSIQYL  680 (1153)
T ss_pred             cCCcEEECcCccccccc-cccc--cCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCC-----ccccchhhhcc
Confidence            46666666666666654 2233  577777777765543 34442  45667777777776621     11223334556


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcc-------
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSS-------  158 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~-------  158 (296)
                      ++|+.|.+++|..+..++..    . ++++|+.|.+++|..+..+|..   ..+|+.|+++++. +..++...       
T Consensus       681 ~~L~~L~L~~c~~L~~Lp~~----i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~~l~~L~~  751 (1153)
T PLN03210        681 NKLEDLDMSRCENLEILPTG----I-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNLRLENLDE  751 (1153)
T ss_pred             CCCCEEeCCCCCCcCccCCc----C-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-ccccccccccccccc
Confidence            77777777777777666543    2 4566777777776655544432   2334444444322 22211100       


Q ss_pred             ---------------------cccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCcc
Q 022501          159 ---------------------TAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCT  217 (296)
Q Consensus       159 ---------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~  217 (296)
                                           ....+++|++|++++|+.+.+++...+.       +++|+.|++.+|.+++.++...  
T Consensus       752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-------L~~L~~L~Ls~C~~L~~LP~~~--  822 (1153)
T PLN03210        752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-------LHKLEHLEIENCINLETLPTGI--  822 (1153)
T ss_pred             ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC-------CCCCCEEECCCCCCcCeeCCCC--
Confidence                                 0011235555555555554444443332       6667777777666666665432  


Q ss_pred             ccCCCccEEeeccCCccccccC
Q 022501          218 FKFPSLEDLFVIDCPKMMIFSF  239 (296)
Q Consensus       218 ~~~~~L~~L~l~~c~~l~~~~~  239 (296)
                       .+++|+.|++++|..+..+|.
T Consensus       823 -~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        823 -NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             -CccccCEEECCCCCccccccc
Confidence             456666666666666555443

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.72  E-value=2.4e-17  Score=163.19  Aligned_cols=60  Identities=18%  Similarity=0.192  Sum_probs=33.0

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEecccc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSY   69 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   69 (296)
                      +++|++|++++|++.+..+.  +  .+++|++|++++|......+..++.+++|++|++++|.+
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~--~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l  176 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPR--G--SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL  176 (968)
T ss_pred             CCCCCEEECcCCccccccCc--c--ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence            46677777766665543221  2  456666666666555422223455566666666666544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.72  E-value=3.6e-17  Score=161.96  Aligned_cols=229  Identities=14%  Similarity=0.086  Sum_probs=124.5

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .+++.|+++++++++..+..+.  .+++|+.|++++|... .+|...+..+++|++|++++|.+.+..+.       +.+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~--~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-------~~l  139 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIF--RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-------GSI  139 (968)
T ss_pred             CcEEEEEecCCCccccCChHHh--CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-------ccc
Confidence            4677888888777766555555  7888888888877765 67777777888888888888866544332       124


Q ss_pred             cccceeEecccccccccccc--------------------cCcccccCCCccEEEeccCccccccccCccccCCccEEEe
Q 022501           86 TQIKSLKLWELSNLLHIWEQ--------------------CYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEV  145 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~--------------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l  145 (296)
                      ++|++|+++++.....++..                    ....+..+++|+.|++++|.....+|..+..+++|+.|++
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  219 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL  219 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence            55555555544322222222                    0000333444444444444333334444444445555555


Q ss_pred             ccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccE
Q 022501          146 SYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLED  225 (296)
Q Consensus       146 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~  225 (296)
                      +++......+  ..+..+++|++|++++|.....++...       ..+++|++|+++++.-...++.  .+..+++|+.
T Consensus       220 ~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~  288 (968)
T PLN00113        220 GYNNLSGEIP--YEIGGLTSLNHLDLVYNNLTGPIPSSL-------GNLKNLQYLFLYQNKLSGPIPP--SIFSLQKLIS  288 (968)
T ss_pred             cCCccCCcCC--hhHhcCCCCCEEECcCceeccccChhH-------hCCCCCCEEECcCCeeeccCch--hHhhccCcCE
Confidence            4433211111  123445555555555544332232222       2256666666665532122222  2345677777


Q ss_pred             EeeccCCccccccCCcccCCCcceEEcccC
Q 022501          226 LFVIDCPKMMIFSFGVLSTPRLREVRKNWG  255 (296)
Q Consensus       226 L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~  255 (296)
                      |++++|.....+|..+..+++|+.++++.+
T Consensus       289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n  318 (968)
T PLN00113        289 LDLSDNSLSGEIPELVIQLQNLEILHLFSN  318 (968)
T ss_pred             EECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence            777777555556666667777888877644

>PLN03210 Resistant to P

Probab=99.69  E-value=2.7e-16  Score=157.13  Aligned_cols=230  Identities=22%  Similarity=0.295  Sum_probs=159.9

Q ss_pred             ccccceEEEeeccCcc------ccccCCCCCCcC-CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCc
Q 022501            5 VIANLEELKLSGKDIT------MICHDHLPKHLF-QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGE   77 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~------~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~   77 (296)
                      .|++|+.|.+..+...      ...+..+.  .+ ++|+.|++.+++...+|..+  ...+|++|++.++.++.++.   
T Consensus       556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~--~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~---  628 (1153)
T PLN03210        556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFD--YLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWD---  628 (1153)
T ss_pred             cCccccEEEEecccccccccceeecCcchh--hcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcccccccc---
Confidence            4788888888664321      11122233  44 46999999888888888643  46889999999887766533   


Q ss_pred             cccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCc
Q 022501           78 VEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSS  157 (296)
Q Consensus        78 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~  157 (296)
                         ....+++|+.|+++++..+..++.     +..+++|++|.+.+|..+..+|..+..+++|+.|++++|..+..++..
T Consensus       629 ---~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~  700 (1153)
T PLN03210        629 ---GVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG  700 (1153)
T ss_pred             ---ccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence               234588889999888877776653     556788899999888888888888888888888888888888777643


Q ss_pred             ccccCCCCccEEEEeCccccceeccccccc---------c---c-------------------------------ccccC
Q 022501          158 STAKSLVCLMKLRIDGCKLMTEIISSEGDV---------E---E-------------------------------DEIVF  194 (296)
Q Consensus       158 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------~---~-------------------------------~~~~~  194 (296)
                         .++++|+.|.+++|..++.++......         .   .                               ....+
T Consensus       701 ---i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        701 ---INLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             ---CCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence               367788888888886654443210000         0   0                               00113


Q ss_pred             CccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccC
Q 022501          195 SRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWG  255 (296)
Q Consensus       195 ~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~  255 (296)
                      ++|+.|++++++.+..++..  +.++++|+.|++.+|+.++.+|... .+++|+.|+++.+
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC  835 (1153)
T ss_pred             ccchheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence            46677777777666666552  4678888888888888888888776 7788888888643

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.63  E-value=1.2e-16  Score=141.30  Aligned_cols=81  Identities=20%  Similarity=0.308  Sum_probs=60.3

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      +++++|+|++|.|..+....|.  .+.+|-.|.+++|.+..+|...|+++++|+.|++..|.++.+.-+.   +  ..++
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~--~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt---F--qgL~  245 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFD--SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT---F--QGLP  245 (873)
T ss_pred             CCceEEeecccccccccccccc--ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh---h--cCch
Confidence            4688888888888887766677  7888888888888999999999999999999999888765542211   1  3366


Q ss_pred             ccceeEec
Q 022501           87 QIKSLKLW   94 (296)
Q Consensus        87 ~L~~L~l~   94 (296)
                      +|+.|.+.
T Consensus       246 Sl~nlklq  253 (873)
T KOG4194|consen  246 SLQNLKLQ  253 (873)
T ss_pred             hhhhhhhh
Confidence            66666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.58  E-value=1.4e-16  Score=140.92  Aligned_cols=254  Identities=18%  Similarity=0.191  Sum_probs=161.6

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      ++|.|++|+|+.|.++++....++  .=.++++|++.+|.+.++-.+.|..+.+|..|+++.|.+..+...     ...+
T Consensus       147 ~l~alrslDLSrN~is~i~~~sfp--~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r-----~Fk~  219 (873)
T KOG4194|consen  147 ALPALRSLDLSRNLISEIPKPSFP--AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQR-----SFKR  219 (873)
T ss_pred             hHhhhhhhhhhhchhhcccCCCCC--CCCCceEEeeccccccccccccccccchheeeecccCcccccCHH-----Hhhh
Confidence            456667777777776666544444  445677777777777766666666677777777777766555331     1234


Q ss_pred             ccccceeEeccccccccc-ccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccC
Q 022501           85 LTQIKSLKLWELSNLLHI-WEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKS  162 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  162 (296)
                      +++|+.|.+... .++.+ +..    +.++++|+.|.+..+ .+..+..+ +..+.++++|+++. +++..+... |..+
T Consensus       220 L~~L~~LdLnrN-~irive~lt----FqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g-~lfg  291 (873)
T KOG4194|consen  220 LPKLESLDLNRN-RIRIVEGLT----FQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLET-NRLQAVNEG-WLFG  291 (873)
T ss_pred             cchhhhhhcccc-ceeeehhhh----hcCchhhhhhhhhhc-CcccccCcceeeecccceeeccc-chhhhhhcc-cccc
Confidence            677777776532 23332 222    666777888777663 44444443 34577888888876 445555443 6788


Q ss_pred             CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc-
Q 022501          163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV-  241 (296)
Q Consensus       163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-  241 (296)
                      ++.|+.|+++.+. +..+-.+.      -...++|++|++++. +++.++.+. +..+..|++|.+.++ .+..+..+. 
T Consensus       292 Lt~L~~L~lS~Na-I~rih~d~------WsftqkL~~LdLs~N-~i~~l~~~s-f~~L~~Le~LnLs~N-si~~l~e~af  361 (873)
T KOG4194|consen  292 LTSLEQLDLSYNA-IQRIHIDS------WSFTQKLKELDLSSN-RITRLDEGS-FRVLSQLEELNLSHN-SIDHLAEGAF  361 (873)
T ss_pred             cchhhhhccchhh-hheeecch------hhhcccceeEecccc-ccccCChhH-HHHHHHhhhhccccc-chHHHHhhHH
Confidence            8899999998864 33332221      112779999999874 477777665 567788999999885 577776654 


Q ss_pred             ccCCCcceEEcccCCcccccCCC---c--hHHHHHHHhccCCCCCccc
Q 022501          242 LSTPRLREVRKNWGLDKGCWEGN---L--NTTIQKLCNNKLPPMVPFS  284 (296)
Q Consensus       242 ~~~~~L~~l~l~~~~~~~~~~~~---~--~~~l~~l~~~~~~~l~~~~  284 (296)
                      ..+.+|++|++..++..|..++.   +  .++++.+.... .++++++
T Consensus       362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~  408 (873)
T KOG4194|consen  362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIP  408 (873)
T ss_pred             HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecc
Confidence            35589999999988888876663   1  35555553322 3444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.39  E-value=1.1e-14  Score=130.31  Aligned_cols=231  Identities=19%  Similarity=0.213  Sum_probs=131.0

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +..|..|+|++|++.+.+ ..+.  .-+++..|++++|.+.++|...+.+++.|-.|++++|.++.++|      ...++
T Consensus       102 l~dLt~lDLShNqL~EvP-~~LE--~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP------Q~RRL  172 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLREVP-TNLE--YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP------QIRRL  172 (1255)
T ss_pred             cccceeeecchhhhhhcc-hhhh--hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCH------HHHHH
Confidence            345667777777777663 3344  45777778888888888887777788888888888877766654      22446


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCcc-ccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNN-LINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      ..|+.|.+++.|-. +.....   ++.+.+|+.|++++... +..+|..+..+++|+.++++ |+++.-++.  ....++
T Consensus       173 ~~LqtL~Ls~NPL~-hfQLrQ---LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~vPe--cly~l~  245 (1255)
T KOG0444|consen  173 SMLQTLKLSNNPLN-HFQLRQ---LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIVPE--CLYKLR  245 (1255)
T ss_pred             hhhhhhhcCCChhh-HHHHhc---CccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcchH--HHhhhh
Confidence            67777777765531 111110   33345566666665443 34556666666666666665 344444432  245566


Q ss_pred             CccEEEEeCccccceeccccccc----------------ccccccCCccceeeccCCc-CcceecCCCccccCCCccEEe
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDV----------------EEDEIVFSRLKWLSLECLD-SLTSFCSGNCTFKFPSLEDLF  227 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~----------------~~~~~~~~~L~~L~l~~~~-~L~~l~~~~~~~~~~~L~~L~  227 (296)
                      +|++|+++++. ++++....+.+                ..+.+-+++|+.|.+.+.. ....+|.+.  +++..|+.+.
T Consensus       246 ~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI--GKL~~Levf~  322 (1255)
T KOG0444|consen  246 NLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI--GKLIQLEVFH  322 (1255)
T ss_pred             hhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccch--hhhhhhHHHH
Confidence            66666666643 33322211110                0122335566666655421 123344433  5566666666


Q ss_pred             eccCCccccccCCcccCCCcceEEcccCC
Q 022501          228 VIDCPKMMIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       228 l~~c~~l~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      ..+ ++++-+|.++..|+.|+.|.++++.
T Consensus       323 aan-N~LElVPEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  323 AAN-NKLELVPEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             hhc-cccccCchhhhhhHHHHHhcccccc
Confidence            655 3566666666666666666666543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.29  E-value=1.1e-13  Score=123.98  Aligned_cols=128  Identities=20%  Similarity=0.215  Sum_probs=77.6

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      .++-.|+|++|+|+.++...+-  .+..|-.||+++|....+|+. +.++.+|++|.+++|.+... .++.+    ..++
T Consensus       126 Kn~iVLNLS~N~IetIPn~lfi--nLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hf-QLrQL----Psmt  197 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIETIPNSLFI--NLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHF-QLRQL----PSMT  197 (1255)
T ss_pred             cCcEEEEcccCccccCCchHHH--hhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHH-HHhcC----ccch
Confidence            4667899999999999766566  788889999999999999874 57889999999998854321 22221    1144


Q ss_pred             ccceeEeccccc-ccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEecc
Q 022501           87 QIKSLKLWELSN-LLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSY  147 (296)
Q Consensus        87 ~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~  147 (296)
                      +|..|.+++-.. +..+|..    +..+.+|..++++. +.+..+|.....+++|++|++++
T Consensus       198 sL~vLhms~TqRTl~N~Pts----ld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  198 SLSVLHMSNTQRTLDNIPTS----LDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             hhhhhhcccccchhhcCCCc----hhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc
Confidence            455555444221 1122222    33444555555543 34444444444445555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.21  E-value=1.7e-10  Score=109.65  Aligned_cols=227  Identities=17%  Similarity=0.180  Sum_probs=134.2

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      .+...|++++.+++.++ ..+    .++|+.|++++|.+..+|....   ++|++|++++|.++.+..        ...+
T Consensus       178 ~~~~~L~L~~~~LtsLP-~~I----p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~--------~l~~  241 (754)
T PRK15370        178 NNKTELRLKILGLTTIP-ACI----PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPA--------TLPD  241 (754)
T ss_pred             cCceEEEeCCCCcCcCC-ccc----ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCCh--------hhhc
Confidence            45667888877777663 222    2578888888888777776443   578888888887665422        1234


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCc
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCL  166 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  166 (296)
                      +|+.|.++++. +..++..    +  ..+|+.|++++ +.+..+|..+  +++|+.|++++| .++.++..    ..++|
T Consensus       242 ~L~~L~Ls~N~-L~~LP~~----l--~s~L~~L~Ls~-N~L~~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~----lp~sL  306 (754)
T PRK15370        242 TIQEMELSINR-ITELPER----L--PSALQSLDLFH-NKISCLPENL--PEELRYLSVYDN-SIRTLPAH----LPSGI  306 (754)
T ss_pred             cccEEECcCCc-cCcCChh----H--hCCCCEEECcC-CccCcccccc--CCCCcEEECCCC-ccccCccc----chhhH
Confidence            77888887754 3444432    1  24688888875 3566666544  357888888775 45544321    12467


Q ss_pred             cEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCC
Q 022501          167 MKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPR  246 (296)
Q Consensus       167 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  246 (296)
                      +.|++++|. +..++..         .+++|+.|++.++. ++.++...    .++|+.|++++| +++.+|..+  .++
T Consensus       307 ~~L~Ls~N~-Lt~LP~~---------l~~sL~~L~Ls~N~-Lt~LP~~l----~~sL~~L~Ls~N-~L~~LP~~l--p~~  368 (754)
T PRK15370        307 THLNVQSNS-LTALPET---------LPPGLKTLEAGENA-LTSLPASL----PPELQVLDVSKN-QITVLPETL--PPT  368 (754)
T ss_pred             HHHHhcCCc-cccCCcc---------ccccceeccccCCc-cccCChhh----cCcccEEECCCC-CCCcCChhh--cCC
Confidence            777777754 2333221         14577777777763 55554321    256778888776 456666543  357


Q ss_pred             cceEEcccCCcccccCCCchHHHHHHHhccCCCCCccc
Q 022501          247 LREVRKNWGLDKGCWEGNLNTTIQKLCNNKLPPMVPFS  284 (296)
Q Consensus       247 L~~l~l~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~  284 (296)
                      |+.|+++.+.... +...+...++.+.+.+ .++..+|
T Consensus       369 L~~LdLs~N~Lt~-LP~~l~~sL~~LdLs~-N~L~~LP  404 (754)
T PRK15370        369 ITTLDVSRNALTN-LPENLPAALQIMQASR-NNLVRLP  404 (754)
T ss_pred             cCEEECCCCcCCC-CCHhHHHHHHHHhhcc-CCcccCc
Confidence            7777776554432 2223344566666555 2344443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.17  E-value=1.8e-10  Score=109.18  Aligned_cols=211  Identities=16%  Similarity=0.111  Sum_probs=108.1

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecC----c-----
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNG----E-----   77 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~-----   77 (296)
                      ++|+.|.+.+|+++.++ .     ..++|++|++++|.+..+|.    ..++|++|++.+|.+..+....    .     
T Consensus       222 ~~L~~L~L~~N~Lt~LP-~-----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~  291 (788)
T PRK15387        222 AHITTLVIPDNNLTSLP-A-----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPALPSGLCKLWIFG  291 (788)
T ss_pred             cCCCEEEccCCcCCCCC-C-----CCCCCcEEEecCCccCcccC----cccccceeeccCCchhhhhhchhhcCEEECcC
Confidence            35677777777776653 1     24677777777776666652    2355666666655444332100    0     


Q ss_pred             --cccccCCccccceeEeccccccccccccc------------CcccccC-CCccEEEeccCccccccccCccccCCccE
Q 022501           78 --VEKQAGMLTQIKSLKLWELSNLLHIWEQC------------YKLDSVF-QNLETLEIWWCNNLINLVPSSASFENLTT  142 (296)
Q Consensus        78 --~~~~~~~~~~L~~L~l~~~~~l~~~~~~~------------~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~l~~L~~  142 (296)
                        +......+++|+.|+++++ .+..++...            ...++.+ .+|+.|+++++ .+..+|..   .++|+.
T Consensus       292 N~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~  366 (788)
T PRK15387        292 NQLTSLPVLPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDN-QLASLPTL---PSELYK  366 (788)
T ss_pred             CccccccccccccceeECCCC-ccccCCCCcccccccccccCccccccccccccceEecCCC-ccCCCCCC---Ccccce
Confidence              0000011355666666654 233322100            0000001 13444444432 33333321   233444


Q ss_pred             EEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCC
Q 022501          143 LEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPS  222 (296)
Q Consensus       143 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~  222 (296)
                      |+++++ .+..++.     ...+|+.|++++|. +..++.          ..++|+.|+++++. ++.++..     ..+
T Consensus       367 L~Ls~N-~L~~LP~-----l~~~L~~LdLs~N~-Lt~LP~----------l~s~L~~LdLS~N~-LssIP~l-----~~~  423 (788)
T PRK15387        367 LWAYNN-RLTSLPA-----LPSGLKELIVSGNR-LTSLPV----------LPSELKELMVSGNR-LTSLPML-----PSG  423 (788)
T ss_pred             ehhhcc-ccccCcc-----cccccceEEecCCc-ccCCCC----------cccCCCEEEccCCc-CCCCCcc-----hhh
Confidence            444432 2332221     12356666666653 332322          14577888888754 6665532     246


Q ss_pred             ccEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501          223 LEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       223 L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      |+.|+++++ +++.+|..+..+++|+.++++.+.
T Consensus       424 L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        424 LLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence            888888875 678888888788999999997654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.13  E-value=1e-10  Score=111.06  Aligned_cols=115  Identities=17%  Similarity=0.228  Sum_probs=72.6

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      ++|+.|++++|+++.++. .    .+++|+.|++++|....+|...   .++|+.|++++|.+..+..        ...+
T Consensus       199 ~~L~~L~Ls~N~LtsLP~-~----l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~--------~l~s  262 (754)
T PRK15370        199 EQITTLILDNNELKSLPE-N----LQGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPE--------RLPS  262 (754)
T ss_pred             cCCcEEEecCCCCCcCCh-h----hccCCCEEECCCCccccCChhh---hccccEEECcCCccCcCCh--------hHhC
Confidence            578899999998887642 2    3468999999888877777533   2478888888887665422        1134


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEecc
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSY  147 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~  147 (296)
                      +|+.|.+++ ..+..++..    +  +++|+.|++++| .+..+|..+  .++|+.|++++
T Consensus       263 ~L~~L~Ls~-N~L~~LP~~----l--~~sL~~L~Ls~N-~Lt~LP~~l--p~sL~~L~Ls~  313 (754)
T PRK15370        263 ALQSLDLFH-NKISCLPEN----L--PEELRYLSVYDN-SIRTLPAHL--PSGITHLNVQS  313 (754)
T ss_pred             CCCEEECcC-CccCccccc----c--CCCCcEEECCCC-ccccCcccc--hhhHHHHHhcC
Confidence            677777774 345555432    1  246777777765 455454332  23455555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=1.1e-11  Score=106.67  Aligned_cols=213  Identities=15%  Similarity=0.219  Sum_probs=142.4

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCcc--ChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNF--SIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   83 (296)
                      +.+|++..|.+..++..+... ..+.|++++.||+++|.....  -..+++++|+|+.|.++.|.+.-.....    ...
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~-~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----~~~  194 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEE-YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----TTL  194 (505)
T ss_pred             HHhhhheeecCccccccchhh-hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc----chh
Confidence            678888889887777664321 223899999999999877632  2356789999999999988544333211    113


Q ss_pred             CccccceeEeccccccc-ccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccC
Q 022501           84 MLTQIKSLKLWELSNLL-HIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKS  162 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  162 (296)
                      .+++|+.|.++.|.--+ ++...    ...+|+|+.|.+.++.....-......++.|+.|++++.+.+ +.......+.
T Consensus       195 ~l~~lK~L~l~~CGls~k~V~~~----~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~  269 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWKDVQWI----LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGT  269 (505)
T ss_pred             hhhhhheEEeccCCCCHHHHHHH----HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccccc
Confidence            58899999999886421 11111    566899999999987544333334445778999999986544 4444445688


Q ss_pred             CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeecc
Q 022501          163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVID  230 (296)
Q Consensus       163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~  230 (296)
                      +|.|+.|.++.|. ++++-..+.+.......||+|+.|.+...+ ++++..-.....+++|+.|.+..
T Consensus       270 l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  270 LPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             ccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhccc
Confidence            9999999998875 344333333333345569999999998754 55554434345677778777644

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.10  E-value=1.9e-09  Score=102.31  Aligned_cols=198  Identities=18%  Similarity=0.141  Sum_probs=106.8

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ   87 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   87 (296)
                      .-..|++++++++.++ ..++    ++|+.|++.+|.+..+|.    .+++|++|++++|.++.+..         ..++
T Consensus       202 ~~~~LdLs~~~LtsLP-~~l~----~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~---------lp~s  263 (788)
T PRK15387        202 GNAVLNVGESGLTTLP-DCLP----AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---------LPPG  263 (788)
T ss_pred             CCcEEEcCCCCCCcCC-cchh----cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccC---------cccc
Confidence            4567899999888774 3333    589999999999888884    46899999999998876632         1456


Q ss_pred             cceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcc---------
Q 022501           88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSS---------  158 (296)
Q Consensus        88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~---------  158 (296)
                      |+.|.+.++. +..++.       .+++|+.|.++++ .+..+|..   +++|+.|+++++ .+..++...         
T Consensus       264 L~~L~Ls~N~-L~~Lp~-------lp~~L~~L~Ls~N-~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls  330 (788)
T PRK15387        264 LLELSIFSNP-LTHLPA-------LPSGLCKLWIFGN-QLTSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAY  330 (788)
T ss_pred             cceeeccCCc-hhhhhh-------chhhcCEEECcCC-cccccccc---ccccceeECCCC-ccccCCCCcccccccccc
Confidence            6777666543 333321       1123444444443 23333321   234444444432 222221100         


Q ss_pred             -----cc-cCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501          159 -----TA-KSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP  232 (296)
Q Consensus       159 -----~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~  232 (296)
                           .+ ....+|+.|++++|. +..++..          .++|+.|++++. .+..++..     ..+|+.|+++++ 
T Consensus       331 ~N~L~~LP~lp~~Lq~LdLS~N~-Ls~LP~l----------p~~L~~L~Ls~N-~L~~LP~l-----~~~L~~LdLs~N-  392 (788)
T PRK15387        331 NNQLTSLPTLPSGLQELSVSDNQ-LASLPTL----------PSELYKLWAYNN-RLTSLPAL-----PSGLKELIVSGN-  392 (788)
T ss_pred             cCccccccccccccceEecCCCc-cCCCCCC----------Ccccceehhhcc-ccccCccc-----ccccceEEecCC-
Confidence                 00 011356666665543 2333221          335555555542 24443321     245777777665 


Q ss_pred             ccccccCCcccCCCcceEEcccCCc
Q 022501          233 KMMIFSFGVLSTPRLREVRKNWGLD  257 (296)
Q Consensus       233 ~l~~~~~~~~~~~~L~~l~l~~~~~  257 (296)
                      .++.+|..   .++|+.|+++.+..
T Consensus       393 ~Lt~LP~l---~s~L~~LdLS~N~L  414 (788)
T PRK15387        393 RLTSLPVL---PSELKELMVSGNRL  414 (788)
T ss_pred             cccCCCCc---ccCCCEEEccCCcC
Confidence            45556542   35677777765543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.07  E-value=1.1e-11  Score=105.48  Aligned_cols=230  Identities=16%  Similarity=0.107  Sum_probs=136.7

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEec-cccceEeec--Cc-------
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRN-SSYKEIFSN--GE-------   77 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~--~~-------   77 (296)
                      .-.+++|..|.|+.+++..|.  .+++|+.|||++|.+..+.+..|+++++|-+|.+.+ |+|+.+...  .+       
T Consensus        68 ~tveirLdqN~I~~iP~~aF~--~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFK--TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccCCcccCChhhcc--chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            456788888999999888888  899999999999999888888889999988888887 666665431  11       


Q ss_pred             ----------cccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccc------------cccccCcc
Q 022501           78 ----------VEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNL------------INLVPSSA  135 (296)
Q Consensus        78 ----------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l------------~~~~~~~~  135 (296)
                                .......+++|..|++.+. .++.+....   +..+..++.+++...+..            ...+....
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~t---f~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGT---FQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccch-hhhhhcccc---ccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence                      0001112444444444432 122332211   334455666665543311            01111111


Q ss_pred             ccC----------------------CccEE---EeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccc
Q 022501          136 SFE----------------------NLTTL---EVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEED  190 (296)
Q Consensus       136 ~l~----------------------~L~~L---~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  190 (296)
                      ++.                      .++.+   ..+.|. .....+...+..+++|++|+++++. ++.+-.      .+
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~-~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~------~a  293 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF-PDSICPAKCFKKLPNLRKLNLSNNK-ITRIED------GA  293 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC-cCCcChHHHHhhcccceEeccCCCc-cchhhh------hh
Confidence            110                      01111   111121 1122222346778999999999865 333321      23


Q ss_pred             cccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcc
Q 022501          191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKN  253 (296)
Q Consensus       191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~  253 (296)
                      +....++++|.+... ++..+..+. +..+..|++|+++++..-..-|..+..+.+|.++.+-
T Consensus       294 Fe~~a~l~eL~L~~N-~l~~v~~~~-f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  294 FEGAAELQELYLTRN-KLEFVSSGM-FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             hcchhhhhhhhcCcc-hHHHHHHHh-hhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence            455788999999874 466665443 7788999999999964434445556677889999885

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.07  E-value=1.9e-10  Score=110.97  Aligned_cols=265  Identities=17%  Similarity=0.120  Sum_probs=151.9

Q ss_pred             cccceEEEeeccC--ccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCcccccc
Q 022501            6 IANLEELKLSGKD--ITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQA   82 (296)
Q Consensus         6 l~~L~~L~L~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   82 (296)
                      .|+|.+|-+.++.  +..+....|.  .+|.|+.||+++|... .+|. .++.+-+|++|+++++.+++++      ...
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~--~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~~LP------~~l  614 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFR--SLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGISHLP------SGL  614 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHh--hCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCccccc------hHH
Confidence            5677788877764  5555444456  7888888888877665 5664 6777888888888888766552      233


Q ss_pred             CCccccceeEecccccccccccccCcccccCCCccEEEeccCc-ccc-ccccCccccCCccEEEeccCcC----------
Q 022501           83 GMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN-NLI-NLVPSSASFENLTTLEVSYCQR----------  150 (296)
Q Consensus        83 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~-~~~~~~~~l~~L~~L~l~~c~~----------  150 (296)
                      +++..|.+|++.....+..++..    ...+++|++|.+..-. ... .......++.+|+.+.+..++.          
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~~~i----~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~  690 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESIPGI----LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT  690 (889)
T ss_pred             HHHHhhheeccccccccccccch----hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence            45666777776665555444221    3335666666665432 000 0001112223333332222111          


Q ss_pred             -------------ccccCCcccccCCCCccEEEEeCccccceecccccccccccc-cCCccceeeccCCcCcceecCCCc
Q 022501          151 -------------LKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEI-VFSRLKWLSLECLDSLTSFCSGNC  216 (296)
Q Consensus       151 -------------l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~L~~l~~~~~  216 (296)
                                   .......+....+.+|+.|.|.+|...+........  .... .|+++..+.+.+|..++++.... 
T Consensus       691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~--~~~~~~f~~l~~~~~~~~~~~r~l~~~~-  767 (889)
T KOG4658|consen  691 RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEES--LIVLLCFPNLSKVSILNCHMLRDLTWLL-  767 (889)
T ss_pred             HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccc--cchhhhHHHHHHHHhhccccccccchhh-
Confidence                         000011123567889999999999865433211110  0111 37788888888888888776532 


Q ss_pred             cccCCCccEEeeccCCccccccCCcccCCCcc----------eEE-ccc-CCcc-cccCCCchHHHHHHHhccCCCCCcc
Q 022501          217 TFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLR----------EVR-KNW-GLDK-GCWEGNLNTTIQKLCNNKLPPMVPF  283 (296)
Q Consensus       217 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~----------~l~-l~~-~~~~-~~~~~~~~~~l~~l~~~~~~~l~~~  283 (296)
                        ..|+|+.|.+..|+.++.+......+..++          .+. +.. .+.. .+|..--...+.++.+..||++..+
T Consensus       768 --f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~  845 (889)
T KOG4658|consen  768 --FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKL  845 (889)
T ss_pred             --ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccC
Confidence              568899999999988877544332333333          331 211 1111 1333322345888889999999999


Q ss_pred             chhhh
Q 022501          284 SSRFL  288 (296)
Q Consensus       284 ~~~~~  288 (296)
                      |...+
T Consensus       846 P~~~~  850 (889)
T KOG4658|consen  846 PLLST  850 (889)
T ss_pred             ccccc
Confidence            87753

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.06  E-value=2.5e-12  Score=109.61  Aligned_cols=108  Identities=17%  Similarity=0.125  Sum_probs=62.7

Q ss_pred             cccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCC
Q 022501          135 ASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSG  214 (296)
Q Consensus       135 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~  214 (296)
                      ..+++|..|++++ +.+.+++..  ++++..|+.|+++.+. ...++.-...       ...++.+-.+ -.++..++..
T Consensus       432 ~~l~kLt~L~L~N-N~Ln~LP~e--~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~-------lq~lEtllas-~nqi~~vd~~  499 (565)
T KOG0472|consen  432 SQLQKLTFLDLSN-NLLNDLPEE--MGSLVRLQTLNLSFNR-FRMLPECLYE-------LQTLETLLAS-NNQIGSVDPS  499 (565)
T ss_pred             Hhhhcceeeeccc-chhhhcchh--hhhhhhhheecccccc-cccchHHHhh-------HHHHHHHHhc-cccccccChH
Confidence            3455666666654 234444422  3455556666666552 1222211111       1122222222 2345666554


Q ss_pred             CccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501          215 NCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       215 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      . .+.+.+|.+|++.+. .+..+|.+.+.+++|++++++++.
T Consensus       500 ~-l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  500 G-LKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             H-hhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence            3 467899999999885 688899999999999999997554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.01  E-value=2.6e-11  Score=105.23  Aligned_cols=242  Identities=17%  Similarity=0.040  Sum_probs=138.9

Q ss_pred             cccceEEEeeccCccccc----cCCCCCCcCCCccEEEeccCCCCccC------hHHHhcCCcccEEEEeccccceEeec
Q 022501            6 IANLEELKLSGKDITMIC----HDHLPKHLFQNLKSLEIVSDKSDNFS------IGFLQRFHNVERLKLRNSSYKEIFSN   75 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~~~~~   75 (296)
                      +++|++|.++++.++...    ...+.  ..+++++|+++++.....+      ...+..+++|++|++++|.+....+ 
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-   98 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALR--PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC-   98 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHh--hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH-
Confidence            567899999997764321    12223  5688999999877655212      2345678899999999886653211 


Q ss_pred             CccccccCCccccceeEecccccccccccccCcccccC-CCccEEEeccCcccc----ccccCccccCCccEEEeccCcC
Q 022501           76 GEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF-QNLETLEIWWCNNLI----NLVPSSASFENLTTLEVSYCQR  150 (296)
Q Consensus        76 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~c~~  150 (296)
                      ..+...... ++|++|.++++.-...-.......+..+ ++|+.|++++|....    .+...+..+++|+.|++++|. 
T Consensus        99 ~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-  176 (319)
T cd00116          99 GVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-  176 (319)
T ss_pred             HHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-
Confidence            111111112 5599999988753210000000013445 789999999886432    222234445789999998865 


Q ss_pred             ccccCC---cccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccc----cCCCc
Q 022501          151 LKNLVS---SSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTF----KFPSL  223 (296)
Q Consensus       151 l~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~----~~~~L  223 (296)
                      +.+-..   ......+++|++|++++|..-......   .......+++|++|++++++ +.+........    ..+.|
T Consensus       177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~---l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L  252 (319)
T cd00116         177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA---LAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISL  252 (319)
T ss_pred             CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHH---HHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCc
Confidence            332110   012344569999999988532111100   01123347899999999875 44322111111    23789


Q ss_pred             cEEeeccCCcc----ccccCCcccCCCcceEEcccCC
Q 022501          224 EDLFVIDCPKM----MIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       224 ~~L~l~~c~~l----~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      +.|++.+|..-    ..+.......++|++++++.+.
T Consensus       253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            99999998532    1223333355789999997543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.01  E-value=7.5e-11  Score=110.03  Aligned_cols=207  Identities=20%  Similarity=0.237  Sum_probs=118.9

Q ss_pred             CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEee-----------------cCccccccCCccccceeEecc
Q 022501           33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFS-----------------NGEVEKQAGMLTQIKSLKLWE   95 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----------------~~~~~~~~~~~~~L~~L~l~~   95 (296)
                      .+|++++++.+....+| +++..+.+|+.+.+..|.+..+..                 +..++.....+.+|++|.+..
T Consensus       241 ~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~  319 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS  319 (1081)
T ss_pred             ccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence            56777777777777777 567777777777777665533321                 111222223356666666654


Q ss_pred             cccccccccccCc----------------------ccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccc
Q 022501           96 LSNLLHIWEQCYK----------------------LDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKN  153 (296)
Q Consensus        96 ~~~l~~~~~~~~~----------------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~  153 (296)
                      . ++.+++.....                      .....+.|+.|.+.++..-....+.+.++.+|+.|+++++ .+..
T Consensus       320 N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~  397 (1081)
T KOG0618|consen  320 N-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNS  397 (1081)
T ss_pred             c-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-cccc
Confidence            2 22222211100                      0122334555555554333344445666778888888764 3444


Q ss_pred             cCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCc
Q 022501          154 LVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPK  233 (296)
Q Consensus       154 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~  233 (296)
                      ++ .+....++.||+|.++++. ++.++.....       +++|++|...+. .+..+|   .+..++.|+.++++ |+.
T Consensus       398 fp-as~~~kle~LeeL~LSGNk-L~~Lp~tva~-------~~~L~tL~ahsN-~l~~fP---e~~~l~qL~~lDlS-~N~  463 (1081)
T KOG0618|consen  398 FP-ASKLRKLEELEELNLSGNK-LTTLPDTVAN-------LGRLHTLRAHSN-QLLSFP---ELAQLPQLKVLDLS-CNN  463 (1081)
T ss_pred             CC-HHHHhchHHhHHHhcccch-hhhhhHHHHh-------hhhhHHHhhcCC-ceeech---hhhhcCcceEEecc-cch
Confidence            33 2356777888888888853 5555544333       777887777653 355555   24577889999994 456


Q ss_pred             cccccCCcccC-CCcceEEcccCC
Q 022501          234 MMIFSFGVLST-PRLREVRKNWGL  256 (296)
Q Consensus       234 l~~~~~~~~~~-~~L~~l~l~~~~  256 (296)
                      +..+-...... ++|++|+++++.
T Consensus       464 L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  464 LSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhhhhhCCCcccceeeccCCc
Confidence            76643333233 789999998543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.93  E-value=1.3e-10  Score=100.93  Aligned_cols=240  Identities=19%  Similarity=0.080  Sum_probs=140.5

Q ss_pred             cccceEEEeeccCcccc------ccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCc---ccEEEEeccccceEeecC
Q 022501            6 IANLEELKLSGKDITMI------CHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHN---VERLKLRNSSYKEIFSNG   76 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~~   76 (296)
                      .+++++|+++++.+...      .+..+.  .+++|+.|++++|.........+..+.+   |++|++++|.+... ...
T Consensus        50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~-~~~  126 (319)
T cd00116          50 QPSLKELCLSLNETGRIPRGLQSLLQGLT--KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDR-GLR  126 (319)
T ss_pred             CCCceEEeccccccCCcchHHHHHHHHHH--hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchH-HHH
Confidence            56799999988765521      012233  5789999999998887444445555554   99999999965431 111


Q ss_pred             ccccccCCc-cccceeEecccccccccccccCcccccCCCccEEEeccCcccc----ccccCccccCCccEEEeccCcCc
Q 022501           77 EVEKQAGML-TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLI----NLVPSSASFENLTTLEVSYCQRL  151 (296)
Q Consensus        77 ~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~l~~L~~L~l~~c~~l  151 (296)
                      .+......+ ++|+.|.++++.-...........+..+++|++|++.+|..-.    .++.....+++|++|++++|. +
T Consensus       127 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i  205 (319)
T cd00116         127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-L  205 (319)
T ss_pred             HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-c
Confidence            112222345 8999999998864311101101114556789999999875332    122233445799999999875 3


Q ss_pred             cccCC---cccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecC---CCccccCCCccE
Q 022501          152 KNLVS---SSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCS---GNCTFKFPSLED  225 (296)
Q Consensus       152 ~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~---~~~~~~~~~L~~  225 (296)
                      .+...   ...+..+++|++|++++|.....-......  ......+.|++|++++|. +++...   ......+++|+.
T Consensus       206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~--~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~  282 (319)
T cd00116         206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS--ALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLE  282 (319)
T ss_pred             ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH--HHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccE
Confidence            32211   123456789999999998632211110000  000124799999999984 432111   111235588999


Q ss_pred             EeeccCCcccc-----ccCCcccC-CCcceEEcc
Q 022501          226 LFVIDCPKMMI-----FSFGVLST-PRLREVRKN  253 (296)
Q Consensus       226 L~l~~c~~l~~-----~~~~~~~~-~~L~~l~l~  253 (296)
                      ++++++. +..     +....... +.|++++|.
T Consensus       283 l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         283 LDLRGNK-FGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             EECCCCC-CcHHHHHHHHHHHhhcCCchhhcccC
Confidence            9999975 432     22222223 577777774

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.85  E-value=1.5e-11  Score=105.05  Aligned_cols=219  Identities=16%  Similarity=0.161  Sum_probs=113.6

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      ++.|.+|.+++|++..++ ..++  .+.+++.|+++.|.+..+|. .+..+.+|..++++.+.+.++.+      .++.+
T Consensus        67 L~~l~vl~~~~n~l~~lp-~aig--~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s~n~~~el~~------~i~~~  136 (565)
T KOG0472|consen   67 LACLTVLNVHDNKLSQLP-AAIG--ELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCSSNELKELPD------SIGRL  136 (565)
T ss_pred             ccceeEEEeccchhhhCC-HHHH--HHHHHHHhhcccchHhhccH-HHhhhhhhhhhhccccceeecCc------hHHHH
Confidence            455666666666665553 3344  45666666666666666664 33445666666666554444432      11222


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccC----------------------ccccccccCccccCCccEE
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC----------------------NNLINLVPSSASFENLTTL  143 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~----------------------~~l~~~~~~~~~l~~L~~L  143 (296)
                      ..|..+.-.+. ++.+++..    +..+.+|..+.+.+.                      +.++.+|+..+++.+|..|
T Consensus       137 ~~l~dl~~~~N-~i~slp~~----~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L  211 (565)
T KOG0472|consen  137 LDLEDLDATNN-QISSLPED----MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELL  211 (565)
T ss_pred             hhhhhhhcccc-ccccCchH----HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence            22322222211 12222222    223333334444332                      2344455555555555555


Q ss_pred             EeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCc
Q 022501          144 EVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSL  223 (296)
Q Consensus       144 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L  223 (296)
                      ++.. +.+..++   .+.++..|++|+++.+ .++-++....      ..+++|..|++++. +++++|.+.  -.+.+|
T Consensus       212 yL~~-Nki~~lP---ef~gcs~L~Elh~g~N-~i~~lpae~~------~~L~~l~vLDLRdN-klke~Pde~--clLrsL  277 (565)
T KOG0472|consen  212 YLRR-NKIRFLP---EFPGCSLLKELHVGEN-QIEMLPAEHL------KHLNSLLVLDLRDN-KLKEVPDEI--CLLRSL  277 (565)
T ss_pred             Hhhh-cccccCC---CCCccHHHHHHHhccc-HHHhhHHHHh------cccccceeeecccc-ccccCchHH--HHhhhh
Confidence            5543 2333332   2344445555555543 2222322221      23778888888874 578887755  446778


Q ss_pred             cEEeeccCCccccccCCcccCCCcceEEcccC
Q 022501          224 EDLFVIDCPKMMIFSFGVLSTPRLREVRKNWG  255 (296)
Q Consensus       224 ~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~  255 (296)
                      ++|++++. .+..+|...+.+ .|+.+.+.++
T Consensus       278 ~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  278 ERLDLSNN-DISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             hhhcccCC-ccccCCcccccc-eeeehhhcCC
Confidence            88888874 677888877777 7777776543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=2.7e-09  Score=68.78  Aligned_cols=60  Identities=27%  Similarity=0.406  Sum_probs=52.5

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSS   68 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   68 (296)
                      |+|++|++++|+++.+++..+.  .+++|++|++++|.+..++++.|..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~--~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFS--NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTT--TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHc--CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            6789999999999988777777  88999999999998888888888899999999998874

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.81  E-value=1.6e-10  Score=98.59  Aligned_cols=215  Identities=21%  Similarity=0.139  Sum_probs=131.9

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEecc-CCCCccChHHHhcCCcccEEEEeccccceEee--------c
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVS-DKSDNFSIGFLQRFHNVERLKLRNSSYKEIFS--------N   75 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------~   75 (296)
                      .+++|+.|+|++|+|+.|.+..|.  .+++|-.|-+.+ |.+..+|.+.|+++.+|+.|.+..|++.-+..        +
T Consensus        89 ~l~~LRrLdLS~N~Is~I~p~AF~--GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l  166 (498)
T KOG4237|consen   89 TLHRLRRLDLSKNNISFIAPDAFK--GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSL  166 (498)
T ss_pred             chhhhceecccccchhhcChHhhh--hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhc
Confidence            478899999999999999999998  999999999976 88889999999999999988887664432211        1


Q ss_pred             ----------Cccc-cccCCccccceeEeccccccc--------ccccccCcccccCC----------------------
Q 022501           76 ----------GEVE-KQAGMLTQIKSLKLWELSNLL--------HIWEQCYKLDSVFQ----------------------  114 (296)
Q Consensus        76 ----------~~~~-~~~~~~~~L~~L~l~~~~~l~--------~~~~~~~~~~~~~~----------------------  114 (296)
                                +.+. ..+..+.+++.+.+...+-+.        +.........+.+.                      
T Consensus       167 ~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c  246 (498)
T KOG4237|consen  167 SLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC  246 (498)
T ss_pred             chhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh
Confidence                      1111 133446677777666544111        10000000000000                      


Q ss_pred             CccEE---EeccCccccccc-cCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccc
Q 022501          115 NLETL---EIWWCNNLINLV-PSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEED  190 (296)
Q Consensus       115 ~L~~L---~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  190 (296)
                      .++.+   .-..|.-...-| ..+..+++|+.|++++ +.++.+-.. ++.+...+++|.+..+. ++.+..      ..
T Consensus       247 ~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~-aFe~~a~l~eL~L~~N~-l~~v~~------~~  317 (498)
T KOG4237|consen  247 SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDG-AFEGAAELQELYLTRNK-LEFVSS------GM  317 (498)
T ss_pred             hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhh-hhcchhhhhhhhcCcch-HHHHHH------Hh
Confidence            01111   000110000011 1245678888888886 456655443 56777888888888864 332222      23


Q ss_pred             cccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501          191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP  232 (296)
Q Consensus       191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~  232 (296)
                      ++.+..|+.|++.+. +++.+.++. +....+|.+|.+-.+|
T Consensus       318 f~~ls~L~tL~L~~N-~it~~~~~a-F~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  318 FQGLSGLKTLSLYDN-QITTVAPGA-FQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hhccccceeeeecCC-eeEEEeccc-ccccceeeeeehccCc
Confidence            556888888988884 477777766 6677788888877654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.78  E-value=1.7e-10  Score=87.87  Aligned_cols=129  Identities=19%  Similarity=0.189  Sum_probs=88.5

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD  110 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  110 (296)
                      .+.+...|.+++|.....|+. ++.+.+|+.|.+.+++++++.      .++.+++.|+.|+++ +..+..+|.+    +
T Consensus        31 ~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp------~~issl~klr~lnvg-mnrl~~lprg----f   98 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELP------TSISSLPKLRILNVG-MNRLNILPRG----F   98 (264)
T ss_pred             chhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcC------hhhhhchhhhheecc-hhhhhcCccc----c
Confidence            357778889999999888875 567999999999999887773      355668888888886 5556555555    6


Q ss_pred             ccCCCccEEEeccCccc-cccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCc
Q 022501          111 SVFQNLETLEIWWCNNL-INLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGC  174 (296)
Q Consensus       111 ~~~~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~  174 (296)
                      +.+|.|+.|++..++.- ..+|-.+..+..|+-|++++. ..+.+++  -.+.+++|+.|.+.++
T Consensus        99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~--dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPP--DVGKLTNLQILSLRDN  160 (264)
T ss_pred             CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCCh--hhhhhcceeEEeeccC
Confidence            77888888888765433 345555666677777777653 2333332  2455666666666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.77  E-value=5.5e-09  Score=81.81  Aligned_cols=129  Identities=19%  Similarity=0.194  Sum_probs=47.8

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      .++++|+|+++.|+.+.  .++. .+.+|+.|++++|.+..+.  .+..+++|++|++.+|.+..+.+  ++   ...++
T Consensus        19 ~~~~~L~L~~n~I~~Ie--~L~~-~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~--~l---~~~lp   88 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIE--NLGA-TLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISE--GL---DKNLP   88 (175)
T ss_dssp             -------------------S--T-T-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CH--HH---HHH-T
T ss_pred             ccccccccccccccccc--chhh-hhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCcccc--ch---HHhCC
Confidence            36789999999988874  2331 5789999999999998776  35678999999999998877622  11   02388


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCcccccc---ccCccccCCccEEEeccC
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINL---VPSSASFENLTTLEVSYC  148 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~c  148 (296)
                      +|++|.+++.. +.++..  ...+..+++|+.|++.+++....-   ...+..+|+|+.|+-...
T Consensus        89 ~L~~L~L~~N~-I~~l~~--l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   89 NLQELYLSNNK-ISDLNE--LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             T--EEE-TTS----SCCC--CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             cCCEEECcCCc-CCChHH--hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            99999998643 333211  222667899999999988754321   112445788998866543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.75  E-value=3.2e-10  Score=97.38  Aligned_cols=240  Identities=20%  Similarity=0.201  Sum_probs=145.8

Q ss_pred             ccccccceEEEeec-cCccccccCCCCCCcCCCccEEEeccCCCCcc--ChHHHhcCCcccEEEEeccccceEeecCccc
Q 022501            3 VQVIANLEELKLSG-KDITMICHDHLPKHLFQNLKSLEIVSDKSDNF--SIGFLQRFHNVERLKLRNSSYKEIFSNGEVE   79 (296)
Q Consensus         3 ~~~l~~L~~L~L~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~   79 (296)
                      .+.+++|+.|.+.. ..+++..-..+. ..|++|++|+++.|+...-  -.....++..++.+...||  .+. +++.+.
T Consensus       186 a~~C~~l~~l~L~~c~~iT~~~Lk~la-~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC--~e~-~le~l~  261 (483)
T KOG4341|consen  186 ARYCRKLRHLNLHSCSSITDVSLKYLA-EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC--LEL-ELEALL  261 (483)
T ss_pred             HHhcchhhhhhhcccchhHHHHHHHHH-HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc--ccc-cHHHHH
Confidence            35678888888887 666665322121 2789999999987765421  1124556777888777777  332 112222


Q ss_pred             cccCCccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCCc
Q 022501           80 KQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVSS  157 (296)
Q Consensus        80 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~  157 (296)
                      .....+.-+.++++..|..+.+...  ......+..||.+..++|..+.+.+.  -..+.++|+.|.+.+|..+++.-..
T Consensus       262 ~~~~~~~~i~~lnl~~c~~lTD~~~--~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft  339 (483)
T KOG4341|consen  262 KAAAYCLEILKLNLQHCNQLTDEDL--WLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT  339 (483)
T ss_pred             HHhccChHhhccchhhhccccchHH--HHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh
Confidence            2223355566667777766654321  11134456788888888877655443  2355678888888888877766544


Q ss_pred             ccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecC---CCccccCCCccEEeeccCCcc
Q 022501          158 STAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCS---GNCTFKFPSLEDLFVIDCPKM  234 (296)
Q Consensus       158 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~---~~~~~~~~~L~~L~l~~c~~l  234 (296)
                      ....+.+.|+.+++..|..+..-     ........+|.|+++.++.|..+++.-.   .........|+.+.+.+|+.+
T Consensus       340 ~l~rn~~~Le~l~~e~~~~~~d~-----tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  340 MLGRNCPHLERLDLEECGLITDG-----TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI  414 (483)
T ss_pred             hhhcCChhhhhhcccccceehhh-----hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence            45667788888888887654322     0111223478888888887776665411   111234566888888888877


Q ss_pred             ccccC-CcccCCCcceEEcc
Q 022501          235 MIFSF-GVLSTPRLREVRKN  253 (296)
Q Consensus       235 ~~~~~-~~~~~~~L~~l~l~  253 (296)
                      +.-.. ....+++|+.+++.
T Consensus       415 ~d~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  415 TDATLEHLSICRNLERIELI  434 (483)
T ss_pred             hHHHHHHHhhCcccceeeee
Confidence            55222 22366778877774

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.73  E-value=4.5e-10  Score=104.95  Aligned_cols=200  Identities=20%  Similarity=0.247  Sum_probs=108.7

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCc-ccEEEEeccccceEeecCccccccCCcc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHN-VERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      +|++|....|+++.+++ ..+  .++.|++|++..|.+..+|..++.-... |+.|..+.+.++.....++     ..++
T Consensus       288 ~L~~l~~~~nel~yip~-~le--~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e-----~~~~  359 (1081)
T KOG0618|consen  288 SLVSLSAAYNELEYIPP-FLE--GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE-----NNHA  359 (1081)
T ss_pred             hHHHHHhhhhhhhhCCC-ccc--ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc-----hhhH
Confidence            34444444444444432 122  3566666666666666666554444433 4555554444333332222     3455


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      .|+.|.+.+..--...+..    +.++.+|+.|+++++ .+..+|.. ..++..|++|+++| +.++.++.  ....++.
T Consensus       360 ~Lq~LylanN~Ltd~c~p~----l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~--tva~~~~  431 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPV----LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPD--TVANLGR  431 (1081)
T ss_pred             HHHHHHHhcCcccccchhh----hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhH--HHHhhhh
Confidence            6666666554322222222    667788888888773 56666653 45677788888887 35655552  2456677


Q ss_pred             ccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcc
Q 022501          166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKM  234 (296)
Q Consensus       166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l  234 (296)
                      |++|...++. +..++.        ...++.|+.+|++. .+|+.+..... ..-|+|++|++.|+..+
T Consensus       432 L~tL~ahsN~-l~~fPe--------~~~l~qL~~lDlS~-N~L~~~~l~~~-~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  432 LHTLRAHSNQ-LLSFPE--------LAQLPQLKVLDLSC-NNLSEVTLPEA-LPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             hHHHhhcCCc-eeechh--------hhhcCcceEEeccc-chhhhhhhhhh-CCCcccceeeccCCccc
Confidence            7777776643 334442        22377777777764 34555433221 11156888888776543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.70  E-value=9.5e-10  Score=83.84  Aligned_cols=152  Identities=22%  Similarity=0.173  Sum_probs=88.6

Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      ++.++.|.+++. ++..++..    +..+.+|+.|.+++ +.++.+|..+..+++|++|+++ .+.+..++  ..++++|
T Consensus        32 ~s~ITrLtLSHN-Kl~~vppn----ia~l~nlevln~~n-nqie~lp~~issl~klr~lnvg-mnrl~~lp--rgfgs~p  102 (264)
T KOG0617|consen   32 MSNITRLTLSHN-KLTVVPPN----IAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVG-MNRLNILP--RGFGSFP  102 (264)
T ss_pred             hhhhhhhhcccC-ceeecCCc----HHHhhhhhhhhccc-chhhhcChhhhhchhhhheecc-hhhhhcCc--cccCCCc
Confidence            555555666553 23344444    55666777777765 4667777777777777777775 34454444  2467777


Q ss_pred             CccEEEEeCcccccee-cccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCccc
Q 022501          165 CLMKLRIDGCKLMTEI-ISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLS  243 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  243 (296)
                      -||.|++..++.-+.. +..       +-.++-|+-|.+.+.. .+.++.+.  +++++|+.|.+++. .+-.+|..++.
T Consensus       103 ~levldltynnl~e~~lpgn-------ff~m~tlralyl~dnd-fe~lp~dv--g~lt~lqil~lrdn-dll~lpkeig~  171 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGN-------FFYMTTLRALYLGDND-FEILPPDV--GKLTNLQILSLRDN-DLLSLPKEIGD  171 (264)
T ss_pred             hhhhhhccccccccccCCcc-------hhHHHHHHHHHhcCCC-cccCChhh--hhhcceeEEeeccC-chhhCcHHHHH
Confidence            7777777765543322 221       1224555666665532 44444433  56667777777664 34466666666


Q ss_pred             CCCcceEEcccCC
Q 022501          244 TPRLREVRKNWGL  256 (296)
Q Consensus       244 ~~~L~~l~l~~~~  256 (296)
                      ++.|+++++..++
T Consensus       172 lt~lrelhiqgnr  184 (264)
T KOG0617|consen  172 LTRLRELHIQGNR  184 (264)
T ss_pred             HHHHHHHhcccce
Confidence            6777777765443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.67  E-value=2.3e-10  Score=98.24  Aligned_cols=219  Identities=19%  Similarity=0.146  Sum_probs=112.0

Q ss_pred             ccceEEEeeccC-ccccccCCCCCCcCCCccEEEeccCCCCcc--ChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501            7 ANLEELKLSGKD-ITMICHDHLPKHLFQNLKSLEIVSDKSDNF--SIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         7 ~~L~~L~L~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   83 (296)
                      ..|++|.+++.. +.+-....+. ..+||+++|.+++|...+-  -..+.+.+++|+.|.+..|.  .+.. ..+.....
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~-~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~--~iT~-~~Lk~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFA-SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS--SITD-VSLKYLAE  213 (483)
T ss_pred             cccccccccccccCCcchhhHHh-hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc--hhHH-HHHHHHHH
Confidence            356777787733 2222112222 2678888888887765421  12344567888888887762  1111 00111223


Q ss_pred             CccccceeEecccccccccccccCcccccCCCccEEEeccCcc--------------------------ccccc--cCcc
Q 022501           84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNN--------------------------LINLV--PSSA  135 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------------l~~~~--~~~~  135 (296)
                      .|++|++|+++.|+.+..-...  ....++..++++...||..                          +++..  ....
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~--~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~  291 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQ--ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC  291 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcch--HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence            4788888888887766541110  0022333444444444433                          22211  1122


Q ss_pred             ccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCC
Q 022501          136 SFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGN  215 (296)
Q Consensus       136 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~  215 (296)
                      ++..|+.|+.++|..+++........+.++|+.+.+..|......-     .+....+.+.|+.+++..|....+-....
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~-----ft~l~rn~~~Le~l~~e~~~~~~d~tL~s  366 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG-----FTMLGRNCPHLERLDLEECGLITDGTLAS  366 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh-----hhhhhcCChhhhhhcccccceehhhhHhh
Confidence            3455666666666666555444444556666666666666533210     01112235666666666665444432222


Q ss_pred             ccccCCCccEEeeccCCcccc
Q 022501          216 CTFKFPSLEDLFVIDCPKMMI  236 (296)
Q Consensus       216 ~~~~~~~L~~L~l~~c~~l~~  236 (296)
                      ...+++.|+.+.+++|..++.
T Consensus       367 ls~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             hccCCchhccCChhhhhhhhh
Confidence            234666677777776665554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.59  E-value=8.3e-08  Score=93.02  Aligned_cols=234  Identities=15%  Similarity=0.162  Sum_probs=152.5

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCC--CCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDK--SDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      ..+...+-++++..+...    ...++|++|-+.++.  ...++..+|..+|.|+.|++++|     ..+..++..++.+
T Consensus       524 ~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~-----~~l~~LP~~I~~L  594 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGN-----SSLSKLPSSIGEL  594 (889)
T ss_pred             heeEEEEeccchhhccCC----CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCC-----CccCcCChHHhhh
Confidence            445566666666665321    256789999998875  67888888999999999999987     4455566677889


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      -+||+|++++. .++++|..    +..+..|.+|++..+..+...+.....+++|++|.+..-..-.+.........+.+
T Consensus       595 i~LryL~L~~t-~I~~LP~~----l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~  669 (889)
T KOG4658|consen  595 VHLRYLDLSDT-GISHLPSG----LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH  669 (889)
T ss_pred             hhhhcccccCC-CccccchH----HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc
Confidence            99999999864 56777777    88899999999998877777765556689999999975431111111123455666


Q ss_pred             ccEEEEeCccc--ccee-------------c---ccccccccccccCCccceeeccCCcCcceecC---CCcccc-CCCc
Q 022501          166 LMKLRIDGCKL--MTEI-------------I---SSEGDVEEDEIVFSRLKWLSLECLDSLTSFCS---GNCTFK-FPSL  223 (296)
Q Consensus       166 L~~L~l~~~~~--~~~~-------------~---~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~---~~~~~~-~~~L  223 (296)
                      |+.+.+..+..  ++.+             .   ............+.+|+.|.+.+|...+....   ...... ++++
T Consensus       670 L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l  749 (889)
T KOG4658|consen  670 LENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL  749 (889)
T ss_pred             hhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence            66666654432  0100             0   00011123345577888888888765432111   011122 6677


Q ss_pred             cEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501          224 EDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       224 ~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      .++.+.+|.....+.. ..-.|+|+.+++.+++
T Consensus       750 ~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~~~  781 (889)
T KOG4658|consen  750 SKVSILNCHMLRDLTW-LLFAPHLTSLSLVSCR  781 (889)
T ss_pred             HHHHhhccccccccch-hhccCcccEEEEeccc
Confidence            7777888876654433 3366899999996543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=4.4e-09  Score=90.94  Aligned_cols=165  Identities=15%  Similarity=0.143  Sum_probs=107.3

Q ss_pred             cccccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChH-HHhcCCcccEEEEeccccceEeecCcccc
Q 022501            2 DVQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIG-FLQRFHNVERLKLRNSSYKEIFSNGEVEK   80 (296)
Q Consensus         2 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   80 (296)
                      +.+.||++++|+|+.|=+..|.+-.--++.||+|+.|+++.|....+... .-.-+++|+.|.+++|.+. ...   +..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls-~k~---V~~  216 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS-WKD---VQW  216 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC-HHH---HHH
Confidence            34679999999999987666632211123799999999998877744432 2235789999999999654 111   122


Q ss_pred             ccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccc--cCccccCCccEEEeccCcCccccCCcc
Q 022501           81 QAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLV--PSSASFENLTTLEVSYCQRLKNLVSSS  158 (296)
Q Consensus        81 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~~~~~~  158 (296)
                      ....+|+|..|.+.+...+-.-...    ...+..|++|++++++.+. .+  .....||.|+.|+++.|. ++++....
T Consensus       217 ~~~~fPsl~~L~L~~N~~~~~~~~~----~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d  290 (505)
T KOG3207|consen  217 ILLTFPSLEVLYLEANEIILIKATS----TKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTG-IASIAEPD  290 (505)
T ss_pred             HHHhCCcHHHhhhhcccccceecch----hhhhhHHhhccccCCcccc-cccccccccccchhhhhccccC-cchhcCCC
Confidence            3345889999988876432211111    3345679999998865443 33  234568888888887653 44432211


Q ss_pred             c-----ccCCCCccEEEEeCccc
Q 022501          159 T-----AKSLVCLMKLRIDGCKL  176 (296)
Q Consensus       159 ~-----~~~l~~L~~L~l~~~~~  176 (296)
                      .     ...+++|++|.+..++.
T Consensus       291 ~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  291 VESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ccchhhhcccccceeeecccCcc
Confidence            1     35678999999988754

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2.8e-09  Score=88.04  Aligned_cols=185  Identities=19%  Similarity=0.177  Sum_probs=95.3

Q ss_pred             CCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccc
Q 022501           33 QNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDS  111 (296)
Q Consensus        33 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  111 (296)
                      .+|++||+++..+. ..--.++.+|.+|+.|.+.+..+...+.     ..+.+=..|+.|+++.|..+.....  ...+.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~-----~~iAkN~~L~~lnlsm~sG~t~n~~--~ll~~  257 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV-----NTIAKNSNLVRLNLSMCSGFTENAL--QLLLS  257 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH-----HHHhccccceeeccccccccchhHH--HHHHH
Confidence            35677777655444 2222355666666666666654333221     1112345666677776666554311  11145


Q ss_pred             cCCCccEEEeccCccccccccC--ccccCCccEEEeccCcCcc-ccCCcccccCCCCccEEEEeCccccce-eccccccc
Q 022501          112 VFQNLETLEIWWCNNLINLVPS--SASFENLTTLEVSYCQRLK-NLVSSSTAKSLVCLMKLRIDGCKLMTE-IISSEGDV  187 (296)
Q Consensus       112 ~~~~L~~L~l~~~~~l~~~~~~--~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~  187 (296)
                      +++.|++|+++.|.........  ...-++|+.|+++||..-- .-........+|+|.+|++++|..++. .+..    
T Consensus       258 scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~----  333 (419)
T KOG2120|consen  258 SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE----  333 (419)
T ss_pred             hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH----
Confidence            5666777777766544332111  1113466777777665321 111112245567777777777766543 1111    


Q ss_pred             ccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501          188 EEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP  232 (296)
Q Consensus       188 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~  232 (296)
                         +-.|+.|++|.++.|+.+-.-.. ..+...|+|.+|++.+|-
T Consensus       334 ---~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  334 ---FFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ---HHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEecccc
Confidence               22277777777777764322100 123456788888888774

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.40  E-value=1.8e-07  Score=73.37  Aligned_cols=38  Identities=16%  Similarity=0.275  Sum_probs=5.7

Q ss_pred             CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccce
Q 022501           33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKE   71 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   71 (296)
                      .+++.|++.++.+..+.. .-..+.+|+.|++++|.++.
T Consensus        19 ~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~   56 (175)
T PF14580_consen   19 VKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITK   56 (175)
T ss_dssp             -----------------S---TT-TT--EEE-TTS--S-
T ss_pred             cccccccccccccccccc-hhhhhcCCCEEECCCCCCcc
Confidence            345556665555554421 11234555555555554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.39  E-value=4.6e-07  Score=58.26  Aligned_cols=60  Identities=23%  Similarity=0.325  Sum_probs=47.9

Q ss_pred             CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccc
Q 022501           33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELS   97 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~   97 (296)
                      |+|++|++++|.+..++.+.+..+++|++|++++|.++.+.+.     ....+++|++|.++++.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-----~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD-----AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT-----TTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH-----HHcCCCCCCEEeCcCCc
Confidence            6899999999988899988999999999999999988776431     12447788888877653

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=7e-09  Score=85.73  Aligned_cols=184  Identities=20%  Similarity=0.157  Sum_probs=116.5

Q ss_pred             CcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc--Cc
Q 022501           57 HNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP--SS  134 (296)
Q Consensus        57 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~  134 (296)
                      +.||.|+++...++    ...+......|.+|+.|++.|..--..+...    +..-.+|+.++++.|..++....  -+
T Consensus       185 sRlq~lDLS~s~it----~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~----iAkN~~L~~lnlsm~sG~t~n~~~ll~  256 (419)
T KOG2120|consen  185 SRLQHLDLSNSVIT----VSTLHGILSQCSKLKNLSLEGLRLDDPIVNT----IAKNSNLVRLNLSMCSGFTENALQLLL  256 (419)
T ss_pred             hhhHHhhcchhhee----HHHHHHHHHHHHhhhhccccccccCcHHHHH----HhccccceeeccccccccchhHHHHHH
Confidence            35777777755332    2222333445888888888876544444333    45556788888888887765433  34


Q ss_pred             cccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCC
Q 022501          135 ASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSG  214 (296)
Q Consensus       135 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~  214 (296)
                      .+++.|..|+++.|...++........--++|..|++++|...-...    +.+-....+|+|..|+++++..+++- .-
T Consensus       257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s----h~~tL~~rcp~l~~LDLSD~v~l~~~-~~  331 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS----HLSTLVRRCPNLVHLDLSDSVMLKND-CF  331 (419)
T ss_pred             HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh----HHHHHHHhCCceeeeccccccccCch-HH
Confidence            56788888888888655544322222334678888888875421110    00011234899999999999888872 22


Q ss_pred             CccccCCCccEEeeccCCcccc-ccCCcccCCCcceEEcc
Q 022501          215 NCTFKFPSLEDLFVIDCPKMMI-FSFGVLSTPRLREVRKN  253 (296)
Q Consensus       215 ~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~l~l~  253 (296)
                      .++-+++.|++|.++.|..+-. --..+...|+|.+|++.
T Consensus       332 ~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  332 QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEec
Confidence            2345899999999999986521 11233577999999996

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.24  E-value=3.9e-06  Score=73.91  Aligned_cols=59  Identities=7%  Similarity=0.109  Sum_probs=29.0

Q ss_pred             CCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccc
Q 022501           32 FQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLH  101 (296)
Q Consensus        32 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  101 (296)
                      +++++.|++++|.+..+|.    -.++|++|.+.+|.  .+..+.+     .-.++|+.|.+++|..+..
T Consensus        51 ~~~l~~L~Is~c~L~sLP~----LP~sLtsL~Lsnc~--nLtsLP~-----~LP~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV----LPNELTEITIENCN--NLTTLPG-----SIPEGLEKLTVCHCPEISG  109 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC----CCCCCcEEEccCCC--CcccCCc-----hhhhhhhheEccCcccccc
Confidence            4666666666665555551    12356666666552  1111111     1134566666666655443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.13  E-value=1.6e-05  Score=70.13  Aligned_cols=140  Identities=15%  Similarity=0.172  Sum_probs=85.6

Q ss_pred             HhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc
Q 022501           53 LQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP  132 (296)
Q Consensus        53 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  132 (296)
                      +..+.++++|++++|.++.++.         ..++|+.|.+++|..+..++..    +  +++|++|.+++|..+..+|.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~~----L--P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---------LPNELTEITIENCNNLTTLPGS----I--PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---------CCCCCcEEEccCCCCcccCCch----h--hhhhhheEccCccccccccc
Confidence            3457889999999887666631         1447999999999888776543    2  35799999998876665543


Q ss_pred             CccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceec
Q 022501          133 SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFC  212 (296)
Q Consensus       133 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~  212 (296)
                            .|+.|.+.+ .....+.     .-.++|+.|.+.++.........       ....++|+.|.+.+|..+. ++
T Consensus       113 ------sLe~L~L~~-n~~~~L~-----~LPssLk~L~I~~~n~~~~~~lp-------~~LPsSLk~L~Is~c~~i~-LP  172 (426)
T PRK15386        113 ------SVRSLEIKG-SATDSIK-----NVPNGLTSLSINSYNPENQARID-------NLISPSLKTLSLTGCSNII-LP  172 (426)
T ss_pred             ------ccceEEeCC-CCCcccc-----cCcchHhheeccccccccccccc-------cccCCcccEEEecCCCccc-Cc
Confidence                  467777753 3222221     22356788887543311111000       0114689999999887543 22


Q ss_pred             CCCccccCCCccEEeeccC
Q 022501          213 SGNCTFKFPSLEDLFVIDC  231 (296)
Q Consensus       213 ~~~~~~~~~~L~~L~l~~c  231 (296)
                      ..    --.+|+.|.+..+
T Consensus       173 ~~----LP~SLk~L~ls~n  187 (426)
T PRK15386        173 EK----LPESLQSITLHIE  187 (426)
T ss_pred             cc----ccccCcEEEeccc
Confidence            11    1156888888764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.10  E-value=5.4e-06  Score=65.16  Aligned_cols=108  Identities=17%  Similarity=0.203  Sum_probs=76.9

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ   87 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   87 (296)
                      +...++|++|++-.+  ..++  .+++|..|.+.+|.+..+.+....-+++|.+|.+.+|++.++.++..+..    ||+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp--~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~----~p~  114 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLP--HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLAS----CPK  114 (233)
T ss_pred             ccceecccccchhhc--ccCC--CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhcc----CCc
Confidence            556788888887775  3356  88999999999999998888777888999999999998888777665444    888


Q ss_pred             cceeEecccccccccccccCcccccCCCccEEEeccC
Q 022501           88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC  124 (296)
Q Consensus        88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~  124 (296)
                      |++|.+-+.+--.. ..=-.-.+..+|+|+.|++...
T Consensus       115 L~~Ltll~Npv~~k-~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHK-KNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cceeeecCCchhcc-cCceeEEEEecCcceEeehhhh
Confidence            88888877543111 0000011455677777777653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.87  E-value=1.3e-05  Score=71.93  Aligned_cols=61  Identities=28%  Similarity=0.456  Sum_probs=28.5

Q ss_pred             cceEEEeeccCccccccCCCCCCcCC-CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceE
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQ-NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEI   72 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   72 (296)
                      .+..|.+.++.+..+. ....  .+. +|+.|++.++.+..++ ..++.+++|+.|.+..|.+..+
T Consensus       117 ~l~~L~l~~n~i~~i~-~~~~--~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l  178 (394)
T COG4886         117 NLTSLDLDNNNITDIP-PLIG--LLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSDL  178 (394)
T ss_pred             ceeEEecCCcccccCc-cccc--cchhhcccccccccchhhhh-hhhhccccccccccCCchhhhh
Confidence            4455555555555442 1122  232 5555555555555443 1234455555555555544444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.81  E-value=5.6e-06  Score=78.53  Aligned_cols=129  Identities=19%  Similarity=0.213  Sum_probs=74.1

Q ss_pred             ccceEEEeec-cCccccccCCCCCCcCCCccEEEeccCCCC--ccChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501            7 ANLEELKLSG-KDITMICHDHLPKHLFQNLKSLEIVSDKSD--NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         7 ~~L~~L~L~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   83 (296)
                      .+|+.|++++ ..+..-|+..++. .||+|++|.+++-...  +|. ...+++|+|..|++++++++.+   .|    .+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~-~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl---~G----IS  192 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGT-MLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNL---SG----IS  192 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhh-hCcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCc---HH----Hh
Confidence            5778888887 3333323334443 6788888888664433  222 3556788888888888766655   22    23


Q ss_pred             CccccceeEecccccccccccccCcccccCCCccEEEeccCcccccc------ccCccccCCccEEEecc
Q 022501           84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINL------VPSSASFENLTTLEVSY  147 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~------~~~~~~l~~L~~L~l~~  147 (296)
                      .+.+|+.|.+.+++--..-   ....+.++.+|+.|+++.-......      -.....+|+|+.|+.++
T Consensus       193 ~LknLq~L~mrnLe~e~~~---~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLEFESYQ---DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             ccccHHHHhccCCCCCchh---hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            3777777777765432210   0011556777888888754332211      12233467777777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.77  E-value=1.6e-05  Score=71.31  Aligned_cols=153  Identities=27%  Similarity=0.345  Sum_probs=111.3

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ   87 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   87 (296)
                      +|++|+++++++..+. ..+.  .+++|+.|++.+|.+..++.. ....++|+.|.++++.+..+....      .....
T Consensus       141 nL~~L~l~~N~i~~l~-~~~~--~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~i~~l~~~~------~~~~~  210 (394)
T COG4886         141 NLKELDLSDNKIESLP-SPLR--NLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKISDLPPEI------ELLSA  210 (394)
T ss_pred             hcccccccccchhhhh-hhhh--ccccccccccCCchhhhhhhh-hhhhhhhhheeccCCccccCchhh------hhhhh
Confidence            8999999999999873 3355  899999999999999998852 237899999999999887775521      23556


Q ss_pred             cceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCcc
Q 022501           88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLM  167 (296)
Q Consensus        88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  167 (296)
                      |+++.+++.+.+..+ ..    ...+..+..+.+.+ ..+..++.....++.++.|++++ +.++++..   ...+.+++
T Consensus       211 L~~l~~~~N~~~~~~-~~----~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~---~~~~~~l~  280 (394)
T COG4886         211 LEELDLSNNSIIELL-SS----LSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSN-NQISSISS---LGSLTNLR  280 (394)
T ss_pred             hhhhhhcCCcceecc-hh----hhhcccccccccCC-ceeeeccchhccccccceecccc-cccccccc---ccccCccC
Confidence            888888876533332 22    55566777777544 34555556667788899999986 45666542   57788999


Q ss_pred             EEEEeCcccccee
Q 022501          168 KLRIDGCKLMTEI  180 (296)
Q Consensus       168 ~L~l~~~~~~~~~  180 (296)
                      .|+++++......
T Consensus       281 ~L~~s~n~~~~~~  293 (394)
T COG4886         281 ELDLSGNSLSNAL  293 (394)
T ss_pred             EEeccCccccccc
Confidence            9999887654433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.76  E-value=3.6e-05  Score=45.65  Aligned_cols=38  Identities=34%  Similarity=0.484  Sum_probs=17.0

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCcc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNF   48 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   48 (296)
                      +|++|++++|+++++++ .+.  .+++|+.|++++|.+..+
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~--~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELS--NLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGT--TCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCc-hHh--CCCCCCEEEecCCCCCCC
Confidence            45555555555555432 233  455555555555544433

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=6e-06  Score=68.70  Aligned_cols=83  Identities=22%  Similarity=0.224  Sum_probs=41.4

Q ss_pred             CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-
Q 022501          162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-  240 (296)
Q Consensus       162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-  240 (296)
                      -||++..+.+..|+.-. ...     +.....+|.+--|.+.. .++.++..-.....|++|..|++.+.|-...+-.+ 
T Consensus       197 ~Fpnv~sv~v~e~PlK~-~s~-----ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~e  269 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKT-ESS-----EKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGE  269 (418)
T ss_pred             hcccchheeeecCcccc-hhh-----cccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCc
Confidence            35556666555554211 111     11233355555555543 23444333223457888888888887766544332 


Q ss_pred             -----cccCCCcceEE
Q 022501          241 -----VLSTPRLREVR  251 (296)
Q Consensus       241 -----~~~~~~L~~l~  251 (296)
                           +..+++++-|+
T Consensus       270 rr~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  270 RRFLLIARLTKVQVLN  285 (418)
T ss_pred             ceEEEEeeccceEEec
Confidence                 23455555553

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.73  E-value=1.8e-06  Score=79.23  Aligned_cols=142  Identities=22%  Similarity=0.172  Sum_probs=87.4

Q ss_pred             cCCCccEEEeccCCCCcc--ChHHHhcCCcccEEEEecc-ccceEeecCccccccCCccccceeEecccccccccccccC
Q 022501           31 LFQNLKSLEIVSDKSDNF--SIGFLQRFHNVERLKLRNS-SYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCY  107 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  107 (296)
                      .+++|+.|.+.++....-  -......+++|++|++.+| ......+. ........+++|+.|++..+..+.+......
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l  264 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL-LLLLLLSICRKLKSLDLSGCGLVTDIGLSAL  264 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh-HhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence            478888888888766532  2245667889999998873 11111110 0111334478888888888776554322211


Q ss_pred             cccccCCCccEEEeccCccccc--cccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcc
Q 022501          108 KLDSVFQNLETLEIWWCNNLIN--LVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCK  175 (296)
Q Consensus       108 ~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  175 (296)
                        ...+++|+.|.+.+|..+++  +......++.|++|++++|..+++........++++++.|.+..+.
T Consensus       265 --~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~  332 (482)
T KOG1947|consen  265 --ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN  332 (482)
T ss_pred             --HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence              22377899998888876433  2223456788999999988887654333345557777776655543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.72  E-value=3.3e-05  Score=45.80  Aligned_cols=41  Identities=24%  Similarity=0.423  Sum_probs=34.1

Q ss_pred             CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEee
Q 022501           33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFS   74 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~   74 (296)
                      ++|++|++++|.+..+|+ .+++|++|++|++++|.++.+.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCCCcC
Confidence            589999999999999986 57899999999999998876643

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.71  E-value=1.8e-06  Score=77.46  Aligned_cols=97  Identities=20%  Similarity=0.187  Sum_probs=41.6

Q ss_pred             EEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCc
Q 022501           37 SLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNL  116 (296)
Q Consensus        37 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L  116 (296)
                      ..|++.|...++|. .+..+..|+.+.++.|.+.-+      ...+..+..|++|+++. ..+..++..    +..+| |
T Consensus        79 ~aDlsrNR~~elp~-~~~~f~~Le~liLy~n~~r~i------p~~i~~L~~lt~l~ls~-NqlS~lp~~----lC~lp-L  145 (722)
T KOG0532|consen   79 FADLSRNRFSELPE-EACAFVSLESLILYHNCIRTI------PEAICNLEALTFLDLSS-NQLSHLPDG----LCDLP-L  145 (722)
T ss_pred             hhhccccccccCch-HHHHHHHHHHHHHHhccceec------chhhhhhhHHHHhhhcc-chhhcCChh----hhcCc-c
Confidence            34444454445543 223344555555544433222      11223344444444442 223333333    22222 5


Q ss_pred             cEEEeccCccccccccCccccCCccEEEecc
Q 022501          117 ETLEIWWCNNLINLVPSSASFENLTTLEVSY  147 (296)
Q Consensus       117 ~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~  147 (296)
                      +.|.+++ ++++.+|..+...++|.+|+.+.
T Consensus       146 kvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~  175 (722)
T KOG0532|consen  146 KVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK  175 (722)
T ss_pred             eeEEEec-CccccCCcccccchhHHHhhhhh
Confidence            5555544 34555555444445555555543

>PLN03150 hypothetical protein; Provisional

Probab=97.63  E-value=8.8e-05  Score=70.32  Aligned_cols=110  Identities=12%  Similarity=0.057  Sum_probs=77.6

Q ss_pred             CccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccccc
Q 022501           34 NLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSV  112 (296)
Q Consensus        34 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  112 (296)
                      .++.|++.++... .+| ..+..+++|+.|++++|.+.+..+     ...+.+++|+.|+++++.-...++..    +..
T Consensus       419 ~v~~L~L~~n~L~g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP-----~~~~~l~~L~~LdLs~N~lsg~iP~~----l~~  488 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIP-----PSLGSITSLEVLDLSYNSFNGSIPES----LGQ  488 (623)
T ss_pred             EEEEEECCCCCccccCC-HHHhCCCCCCEEECCCCcccCcCC-----hHHhCCCCCCEEECCCCCCCCCCchH----Hhc
Confidence            4788888887776 444 467788999999999887765433     22356889999999887655455554    677


Q ss_pred             CCCccEEEeccCccccccccCccc-cCCccEEEeccCcCccc
Q 022501          113 FQNLETLEIWWCNNLINLVPSSAS-FENLTTLEVSYCQRLKN  153 (296)
Q Consensus       113 ~~~L~~L~l~~~~~l~~~~~~~~~-l~~L~~L~l~~c~~l~~  153 (296)
                      +++|+.|+++++...+.+|..+.. +.++..+++.++..+..
T Consensus       489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence            889999999987766677765433 34566778877665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.62  E-value=4.6e-06  Score=76.45  Aligned_cols=141  Identities=20%  Similarity=0.146  Sum_probs=78.4

Q ss_pred             CccccceeEecccccccccccccCcccccCCCccEEEeccC-ccccccc----cCccccCCccEEEeccCcCccccCCcc
Q 022501           84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC-NNLINLV----PSSASFENLTTLEVSYCQRLKNLVSSS  158 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~----~~~~~l~~L~~L~l~~c~~l~~~~~~~  158 (296)
                      .++.|+.|.+.+|..+.....  .......+.|++|++++| ......+    .....+++|+.|+++.|..+++.....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~  263 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSL--DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA  263 (482)
T ss_pred             hCchhhHhhhcccccCChhhH--HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence            367777777777766654210  011455677888888763 2222211    123345777888888777666655444


Q ss_pred             cccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccC
Q 022501          159 TAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDC  231 (296)
Q Consensus       159 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c  231 (296)
                      .+..+++|++|.+.+|..+++     .+.......+++|++|++++|..+++-........+++++.|.+..+
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~-----~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTD-----EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             HHhhCCCcceEccCCCCccch-----hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            445577788888777765321     11111233477788888887776644322222334555555444433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.62  E-value=1.4e-05  Score=66.69  Aligned_cols=206  Identities=17%  Similarity=0.156  Sum_probs=121.0

Q ss_pred             cccceEEEeeccC--c--cccccC--CCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEe---ec-
Q 022501            6 IANLEELKLSGKD--I--TMICHD--HLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIF---SN-   75 (296)
Q Consensus         6 l~~L~~L~L~~~~--~--~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~-   75 (296)
                      +..|.+|..++.+  +  +.+.+.  .|....|++|+.+.++.|....+-. ....-|.|+++.+....+....   |. 
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~~~l~pe~  259 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDVPSLLPET  259 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheec-eeecCchhheeeeecccccccccccchh
Confidence            4577888877632  1  222211  1233468899999998876554431 2223467888887654322221   10 


Q ss_pred             -------------Cc-cccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCcc
Q 022501           76 -------------GE-VEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLT  141 (296)
Q Consensus        76 -------------~~-~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~  141 (296)
                                   .| .-.....-..|+.+++++.. +..+...    ..-.|.++.|+++.+ .+..+.. +..+++|+
T Consensus       260 ~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~iDES----vKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~  332 (490)
T KOG1259|consen  260 ILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQIDES----VKLAPKLRRLILSQN-RIRTVQN-LAELPQLQ  332 (490)
T ss_pred             hhcCccCCCCCccCCceEEecchHhhhhhccccccc-hhhhhhh----hhhccceeEEecccc-ceeeehh-hhhcccce
Confidence                         00 01111123456777777532 3334333    555788999999875 4444433 55688999


Q ss_pred             EEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCC
Q 022501          142 TLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFP  221 (296)
Q Consensus       142 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~  221 (296)
                      .|+++++ .++.+.  .|-..+.+.++|.+.++. ++++.. .+.       +=+|..|++.+. +++.+..-...+++|
T Consensus       333 ~LDLS~N-~Ls~~~--Gwh~KLGNIKtL~La~N~-iE~LSG-L~K-------LYSLvnLDl~~N-~Ie~ldeV~~IG~LP  399 (490)
T KOG1259|consen  333 LLDLSGN-LLAECV--GWHLKLGNIKTLKLAQNK-IETLSG-LRK-------LYSLVNLDLSSN-QIEELDEVNHIGNLP  399 (490)
T ss_pred             Eeecccc-hhHhhh--hhHhhhcCEeeeehhhhh-Hhhhhh-hHh-------hhhheecccccc-chhhHHHhccccccc
Confidence            9999874 344433  245667888999888853 333332 122       567888888874 355544333357899


Q ss_pred             CccEEeeccCC
Q 022501          222 SLEDLFVIDCP  232 (296)
Q Consensus       222 ~L~~L~l~~c~  232 (296)
                      .|+.+.+.++|
T Consensus       400 CLE~l~L~~NP  410 (490)
T KOG1259|consen  400 CLETLRLTGNP  410 (490)
T ss_pred             HHHHHhhcCCC
Confidence            99999999977

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.61  E-value=8.3e-06  Score=68.03  Aligned_cols=128  Identities=20%  Similarity=0.252  Sum_probs=55.6

Q ss_pred             CCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccc
Q 022501           32 FQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDS  111 (296)
Q Consensus        32 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  111 (296)
                      ...|..+|+++|.+..+.. ..+-.|.++.|+++.|++..+-.+..       +++|+.|++++.. +..+..+    ..
T Consensus       283 Wq~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~nLa~-------L~~L~~LDLS~N~-Ls~~~Gw----h~  349 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRTVQNLAE-------LPQLQLLDLSGNL-LAECVGW----HL  349 (490)
T ss_pred             Hhhhhhccccccchhhhhh-hhhhccceeEEeccccceeeehhhhh-------cccceEeecccch-hHhhhhh----Hh
Confidence            3455555555555555443 23444555555555554444422221       5555555555421 2222111    12


Q ss_pred             cCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcc
Q 022501          112 VFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCK  175 (296)
Q Consensus       112 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  175 (296)
                      .+-+.++|.+.++ .++++. ++..+-+|..|+++++ ++..+.....++++|.|+.+.+.+++
T Consensus       350 KLGNIKtL~La~N-~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  350 KLGNIKTLKLAQN-KIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhcCEeeeehhhh-hHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence            2334455555442 222211 2233344555555542 33333222334555555555555544

>PLN03150 hypothetical protein; Provisional

Probab=97.55  E-value=0.00018  Score=68.26  Aligned_cols=112  Identities=13%  Similarity=0.093  Sum_probs=81.0

Q ss_pred             cccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCcccc
Q 022501           58 NVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASF  137 (296)
Q Consensus        58 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l  137 (296)
                      .++.|++.++.+.+..+     .....+++|+.|+++++.....++..    +..+++|+.|+++++...+.+|..+..+
T Consensus       419 ~v~~L~L~~n~L~g~ip-----~~i~~L~~L~~L~Ls~N~l~g~iP~~----~~~l~~L~~LdLs~N~lsg~iP~~l~~L  489 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIP-----NDISKLRHLQSINLSGNSIRGNIPPS----LGSITSLEVLDLSYNSFNGSIPESLGQL  489 (623)
T ss_pred             EEEEEECCCCCccccCC-----HHHhCCCCCCEEECCCCcccCcCChH----HhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence            47888888887765543     23456899999999987554455544    6788999999999987667788888889


Q ss_pred             CCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccce
Q 022501          138 ENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTE  179 (296)
Q Consensus       138 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~  179 (296)
                      ++|+.|+++++.....++ ......+.++..+.+.++..+..
T Consensus       490 ~~L~~L~Ls~N~l~g~iP-~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        490 TSLRILNLNGNSLSGRVP-AALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CCCCEEECcCCcccccCC-hHHhhccccCceEEecCCccccC
Confidence            999999999875433433 22223345677888888776553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.46  E-value=2.8e-06  Score=76.34  Aligned_cols=192  Identities=18%  Similarity=0.149  Sum_probs=131.9

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK   89 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~   89 (296)
                      ...+++.|++..++ ..+.  .|-.|+.+.++.|.+-.+|. .+.++..|..|+++.|.+..+..      .+. .--|+
T Consensus        78 ~~aDlsrNR~~elp-~~~~--~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~NqlS~lp~------~lC-~lpLk  146 (722)
T KOG0532|consen   78 VFADLSRNRFSELP-EEAC--AFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSNQLSHLPD------GLC-DLPLK  146 (722)
T ss_pred             hhhhccccccccCc-hHHH--HHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccchhhcCCh------hhh-cCcce
Confidence            34567777777773 4444  78889999998888888885 56788899999999887665533      111 11466


Q ss_pred             eeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEE
Q 022501           90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKL  169 (296)
Q Consensus        90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  169 (296)
                      .|-+++ .++..++..    +...+.|..|+.+.| .+..++.-..++.+|+.|.++.. .+.+++..  ...+ .|.+|
T Consensus       147 vli~sN-Nkl~~lp~~----ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn-~l~~lp~E--l~~L-pLi~l  216 (722)
T KOG0532|consen  147 VLIVSN-NKLTSLPEE----IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE--LCSL-PLIRL  216 (722)
T ss_pred             eEEEec-CccccCCcc----cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH--HhCC-ceeee
Confidence            666664 455666665    666778888888765 56778877788888998888764 45566533  2333 37777


Q ss_pred             EEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCc-cccCCCccEEeeccC
Q 022501          170 RIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNC-TFKFPSLEDLFVIDC  231 (296)
Q Consensus       170 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~-~~~~~~L~~L~l~~c  231 (296)
                      +++. +.+..++....+       +..|++|.+++.| |++-+...+ .+...-.|+|.+..|
T Consensus       217 DfSc-Nkis~iPv~fr~-------m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  217 DFSC-NKISYLPVDFRK-------MRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eccc-Cceeecchhhhh-------hhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence            7765 457777776555       8899999998877 666543221 235566788888888

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.27  E-value=0.00016  Score=68.92  Aligned_cols=136  Identities=20%  Similarity=0.250  Sum_probs=63.2

Q ss_pred             CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccc-eEeecC-cc------c--cccCCccccceeEeccccccccc
Q 022501           33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYK-EIFSNG-EV------E--KQAGMLTQIKSLKLWELSNLLHI  102 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~-~~------~--~~~~~~~~L~~L~l~~~~~l~~~  102 (296)
                      -++.+.++.+.....-...+..... |++|.+.+.... ...-.. .+      .  .....-.+|++|+++|...+..-
T Consensus        60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~  138 (699)
T KOG3665|consen   60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG  138 (699)
T ss_pred             heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence            3555566655544444444444444 777777754211 110000 00      0  00112346666666664333221


Q ss_pred             ccccCcccccCCCccEEEeccCcccc-ccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcc
Q 022501          103 WEQCYKLDSVFQNLETLEIWWCNNLI-NLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCK  175 (296)
Q Consensus       103 ~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  175 (296)
                      |..  .....+|+|++|.+.+-.... ++..-..+||+|..|+|+++ +++++   .+.+.+++|+.|.+.+..
T Consensus       139 W~~--kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl---~GIS~LknLq~L~mrnLe  206 (699)
T KOG3665|consen  139 WPK--KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL---SGISRLKNLQVLSMRNLE  206 (699)
T ss_pred             HHH--HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc---HHHhccccHHHHhccCCC
Confidence            111  113446667777766532211 11122345666777777663 34444   345566666666665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.16  E-value=0.00046  Score=54.56  Aligned_cols=90  Identities=19%  Similarity=0.185  Sum_probs=67.5

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccCh-HHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSI-GFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   83 (296)
                      .+++|.+|.+++|+|..+.+....  .+|+|+.|.+.+|.+..+.. .-+..+|.|++|.+-+|.+.+-.-.+.  ..+-
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~--~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~--yvl~  137 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDT--FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL--YVLY  137 (233)
T ss_pred             CccccceEEecCCcceeeccchhh--hccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCcee--EEEE
Confidence            378899999999999999877666  78999999999988874432 235679999999999986554432221  1223


Q ss_pred             CccccceeEeccccc
Q 022501           84 MLTQIKSLKLWELSN   98 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~   98 (296)
                      .+|+|+.|++.+...
T Consensus       138 klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  138 KLPSLRTLDFQKVTR  152 (233)
T ss_pred             ecCcceEeehhhhhH
Confidence            589999999987543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=0.00035  Score=58.45  Aligned_cols=80  Identities=15%  Similarity=0.242  Sum_probs=52.4

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC----ccChHHHhcCCcccEEEEecccc--ceEeecCccc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD----NFSIGFLQRFHNVERLKLRNSSY--KEIFSNGEVE   79 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~   79 (296)
                      .+.+++++|.+|.+++|....--...+|.|+.|+++.|+..    ..|    ..+.+|++|.+.+..+  ...      .
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~------~  139 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQS------T  139 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhh------h
Confidence            46788999999998888421111137899999999877654    333    3467899999988742  222      2


Q ss_pred             cccCCccccceeEecc
Q 022501           80 KQAGMLTQIKSLKLWE   95 (296)
Q Consensus        80 ~~~~~~~~L~~L~l~~   95 (296)
                      .....+|.++.|+++.
T Consensus       140 s~l~~lP~vtelHmS~  155 (418)
T KOG2982|consen  140 SSLDDLPKVTELHMSD  155 (418)
T ss_pred             hhhhcchhhhhhhhcc
Confidence            2223466677776664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.09  E-value=3.9e-05  Score=65.19  Aligned_cols=200  Identities=16%  Similarity=0.078  Sum_probs=113.9

Q ss_pred             cCCCccEEEeccCCCC-ccCh---HHHhcCCcccEEEEeccccceEee--cCc------cccccCCccccceeEeccccc
Q 022501           31 LFQNLKSLEIVSDKSD-NFSI---GFLQRFHNVERLKLRNSSYKEIFS--NGE------VEKQAGMLTQIKSLKLWELSN   98 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~~~~~~--~~~------~~~~~~~~~~L~~L~l~~~~~   98 (296)
                      .+|+|++|+|++|-.+ ..+.   ..++++..|++|++.+|.+...-.  +.+      ...-..+-+.||.+..++.. 
T Consensus        90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-  168 (382)
T KOG1909|consen   90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-  168 (382)
T ss_pred             cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-
Confidence            5689999999999877 3332   356788999999999995422111  000      22234557788888877532 


Q ss_pred             ccccccccC-cccccCCCccEEEeccCccc----cccccCccccCCccEEEeccCcCccc--cCCcccccCCCCccEEEE
Q 022501           99 LLHIWEQCY-KLDSVFQNLETLEIWWCNNL----INLVPSSASFENLTTLEVSYCQRLKN--LVSSSTAKSLVCLMKLRI  171 (296)
Q Consensus        99 l~~~~~~~~-~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l  171 (296)
                      +..-+.... ..+...+.|+.+.+..+..-    +-+...+..+++|+.|+++++..-..  .........+++|+.+++
T Consensus       169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l  248 (382)
T KOG1909|consen  169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL  248 (382)
T ss_pred             cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence            111110000 01444578888888764321    11222456689999999988643221  111113456788999999


Q ss_pred             eCccccceecccccccccccccCCccceeeccCCcCccee--cCCCccccCCCccEEeeccCCc
Q 022501          172 DGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSF--CSGNCTFKFPSLEDLFVIDCPK  233 (296)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l--~~~~~~~~~~~L~~L~l~~c~~  233 (296)
                      ++|..-..-.....  .......|+|+.|.+.++..-.+-  .........|.|+.|.+++|..
T Consensus       249 ~dcll~~~Ga~a~~--~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  249 GDCLLENEGAIAFV--DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccHHHHH--HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            99964321100000  001123899999999886421110  0111122468899999999853

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=9.7e-05  Score=61.13  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=20.1

Q ss_pred             CCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEee
Q 022501           32 FQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFS   74 (296)
Q Consensus        32 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~   74 (296)
                      +.+.++|+.++|.+.++.  +..+|+.||.|.++-|+|+.+.+
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p   58 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP   58 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh
Confidence            344455555555544443  34455555555555554444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=5.9e-05  Score=62.39  Aligned_cols=105  Identities=21%  Similarity=0.191  Sum_probs=71.3

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +.+.++|+..+.++.++...  .  .+|-|+.|.|+-|.+.++.+  +..|++|++|++..|.|..+-.+.-    ..++
T Consensus        18 l~~vkKLNcwg~~L~DIsic--~--kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~Y----Lknl   87 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISIC--E--KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEY----LKNL   87 (388)
T ss_pred             HHHhhhhcccCCCccHHHHH--H--hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHH----HhcC
Confidence            55678888888888887522  2  78999999999999988764  6789999999999886655533322    2348


Q ss_pred             cccceeEeccccccccccccc-CcccccCCCccEEE
Q 022501           86 TQIKSLKLWELSNLLHIWEQC-YKLDSVFQNLETLE  120 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~  120 (296)
                      |+|+.|.+...|.-..-+..- ...+..+|+|++|+
T Consensus        88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            889888888766532211000 00144566677664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.39  E-value=0.0011  Score=54.49  Aligned_cols=109  Identities=17%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD  110 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  110 (296)
                      .+.+|+.|++.+....++.  -+-.+++|++|.+++|....   ..++...+..+|+|++|++++... ..+  ....+.
T Consensus        41 ~~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~---~~~l~vl~e~~P~l~~l~ls~Nki-~~l--stl~pl  112 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRV---SGGLEVLAEKAPNLKVLNLSGNKI-KDL--STLRPL  112 (260)
T ss_pred             cccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccc---cccceehhhhCCceeEEeecCCcc-ccc--cccchh
Confidence            4556666666554443221  01146677777777662211   122333344467777777765432 111  111114


Q ss_pred             ccCCCccEEEeccCcccccccc----CccccCCccEEEeccC
Q 022501          111 SVFQNLETLEIWWCNNLINLVP----SSASFENLTTLEVSYC  148 (296)
Q Consensus       111 ~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~c  148 (296)
                      ..+++|..|.+..|.... +..    .+..+++|++|+-..+
T Consensus       113 ~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence            455667777777665433 111    1233566776655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.29  E-value=0.0001  Score=68.51  Aligned_cols=80  Identities=23%  Similarity=0.246  Sum_probs=56.4

Q ss_pred             cccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501            4 QVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         4 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   83 (296)
                      +.+|.|+.|+|++|++.+..  .+.  .+++|++|||+.|....+|--.-..+. |+.|.+.+|.++.+..++       
T Consensus       184 qll~ale~LnLshNk~~~v~--~Lr--~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie-------  251 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKVD--NLR--RLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIE-------  251 (1096)
T ss_pred             HHHHHhhhhccchhhhhhhH--HHH--hcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHH-------
Confidence            34789999999999988874  345  799999999988887766632222333 888999888655543322       


Q ss_pred             CccccceeEecc
Q 022501           84 MLTQIKSLKLWE   95 (296)
Q Consensus        84 ~~~~L~~L~l~~   95 (296)
                      ++.+|+.|++++
T Consensus       252 ~LksL~~LDlsy  263 (1096)
T KOG1859|consen  252 NLKSLYGLDLSY  263 (1096)
T ss_pred             hhhhhhccchhH
Confidence            266667676664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.10  E-value=0.0029  Score=57.15  Aligned_cols=105  Identities=23%  Similarity=0.215  Sum_probs=65.5

Q ss_pred             cccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501            4 QVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         4 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   83 (296)
                      ..+.+|+.|++.+|.++.+.. .+.  .+++|+.|++++|.+..+..  +..++.|+.|++.+|.+..+..+..      
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~-~l~--~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~------  160 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIEN-LLS--SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLES------  160 (414)
T ss_pred             ccccceeeeeccccchhhccc-chh--hhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCcc------
Confidence            347788888888888887642 133  68888888888888876652  4567778888888887666544332      


Q ss_pred             CccccceeEecccccccccccccCcccccCCCccEEEeccC
Q 022501           84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC  124 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~  124 (296)
                       +.+|+.++++++... .+...  . ...+..++.+.+.++
T Consensus       161 -l~~L~~l~l~~n~i~-~ie~~--~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  161 -LKSLKLLDLSYNRIV-DIEND--E-LSELISLEELDLGGN  196 (414)
T ss_pred             -chhhhcccCCcchhh-hhhhh--h-hhhccchHHHhccCC
Confidence             667777777654432 21110  0 133455666666553

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.99  E-value=0.0018  Score=53.12  Aligned_cols=110  Identities=20%  Similarity=0.295  Sum_probs=67.2

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccC--CCC-ccChHHHhcCCcccEEEEeccccceEeecCcccccc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSD--KSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQA   82 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   82 (296)
                      +.+|+.|.+.+..++.+  ..++  .+|+||+|.++.|  .+. .++. .+..+|+|++|.+++|+++-+-.+..+..  
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P--~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~--  114 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFP--KLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKE--  114 (260)
T ss_pred             ccchhhhhhhccceeec--ccCC--CcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhh--
Confidence            55666666665555543  3355  7899999999777  333 3333 34566999999999997765544444333  


Q ss_pred             CCccccceeEecccccccccccccCcccccCCCccEEEeccCc
Q 022501           83 GMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN  125 (296)
Q Consensus        83 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~  125 (296)
                        +.+|..|.+.+|+... +..-....+..+++|+.|+-..+.
T Consensus       115 --l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  115 --LENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             --hcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccC
Confidence              7778888888876543 111111114456677766655443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.81  E-value=0.002  Score=58.25  Aligned_cols=125  Identities=20%  Similarity=0.286  Sum_probs=78.4

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +..++.+.++.+.+..+. ..+.  .+.+|..|++.+|.+..+.. .+..+++|++|++++|.|..+..+..       +
T Consensus        71 l~~l~~l~l~~n~i~~~~-~~l~--~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~~-------l  139 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKIL-NHLS--KLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLST-------L  139 (414)
T ss_pred             hHhHHhhccchhhhhhhh-cccc--cccceeeeeccccchhhccc-chhhhhcchheeccccccccccchhh-------c
Confidence            456666777777766632 2244  68888888888887776552 24678888888888887777655444       6


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYC  148 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c  148 (296)
                      +.|+.|.+.+... +.+..     +..++.|+.+++.++. +..+... ...+.+++.+.+.+.
T Consensus       140 ~~L~~L~l~~N~i-~~~~~-----~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  140 TLLKELNLSGNLI-SDISG-----LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             cchhhheeccCcc-hhccC-----CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCC
Confidence            6688888877543 23221     3446677777777753 3333321 244566666666553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.78  E-value=0.06  Score=39.67  Aligned_cols=101  Identities=17%  Similarity=0.200  Sum_probs=39.1

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD  110 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  110 (296)
                      .+.+|+.+.+.+ ....+....+..+++|+++.+.+. +..+.. .    ....+++|+.+.+.+  .+..++...   +
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~-~----~F~~~~~l~~i~~~~--~~~~i~~~~---F   77 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGD-N----AFSNCKSLESITFPN--NLKSIGDNA---F   77 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-T-T----TTTT-TT-EEEEETS--TT-EE-TTT---T
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccce-e----eeecccccccccccc--ccccccccc---c
Confidence            555666666653 233455555566666666666543 333211 1    112355566666643  333332221   3


Q ss_pred             ccCCCccEEEeccCccccccccC-ccccCCccEEEec
Q 022501          111 SVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVS  146 (296)
Q Consensus       111 ~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~  146 (296)
                      ..+++|+.+.+..  .+..+... +.+. +|+.+.+.
T Consensus        78 ~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   78 SNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             TT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred             cccccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence            4456677776643  23334332 2333 66666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.77  E-value=0.0011  Score=56.64  Aligned_cols=140  Identities=14%  Similarity=0.085  Sum_probs=89.5

Q ss_pred             ccceEEEeeccCcccccc----CCCCCCcCCCccEEEeccCCCC----ccChHHHhcCCcccEEEEeccccceEeecCcc
Q 022501            7 ANLEELKLSGKDITMICH----DHLPKHLFQNLKSLEIVSDKSD----NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEV   78 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   78 (296)
                      ++|+++....|.+++-+.    ..+.  ..|.|+.+.+..|.+.    +.-...+..+++|+.|++.+|.+..--. ..+
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~--~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs-~~L  233 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQ--SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS-VAL  233 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHH--hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH-HHH
Confidence            678999998888766421    2233  5689999999877665    2344567889999999999984432211 112


Q ss_pred             ccccCCccccceeEecccccccccccccC-cc-cccCCCccEEEeccCccccc----cccCccccCCccEEEeccCcC
Q 022501           79 EKQAGMLTQIKSLKLWELSNLLHIWEQCY-KL-DSVFQNLETLEIWWCNNLIN----LVPSSASFENLTTLEVSYCQR  150 (296)
Q Consensus        79 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~-~~~~~~L~~L~l~~~~~l~~----~~~~~~~l~~L~~L~l~~c~~  150 (296)
                      ......+++|+.|.+++|-- +.-..... .. -...|+|+.+.+.+|....+    +......-|.|..|++++|..
T Consensus       234 akaL~s~~~L~El~l~dcll-~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  234 AKALSSWPHLRELNLGDCLL-ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhcccchheeeccccccc-ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            33445588999999998842 21100000 00 23378899999998754432    222233368899999998764

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.12  E-value=0.16  Score=37.36  Aligned_cols=107  Identities=21%  Similarity=0.220  Sum_probs=40.6

Q ss_pred             hHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccc
Q 022501           50 IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLIN  129 (296)
Q Consensus        50 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  129 (296)
                      ...+.++++|+.+.+... ++.+.. .    ....+++|+.+.+.+  .+..++...   +..++.++.+.+.+  .+..
T Consensus         5 ~~~F~~~~~l~~i~~~~~-~~~I~~-~----~F~~~~~l~~i~~~~--~~~~i~~~~---F~~~~~l~~i~~~~--~~~~   71 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPNT-IKKIGE-N----AFSNCTSLKSINFPN--NLTSIGDNA---FSNCKSLESITFPN--NLKS   71 (129)
T ss_dssp             TTTTTT-TT--EEEETST---EE-T-T----TTTT-TT-SEEEESS--TTSCE-TTT---TTT-TT-EEEEETS--TT-E
T ss_pred             HHHHhCCCCCCEEEECCC-eeEeCh-h----hcccccccccccccc--cccccceee---eecccccccccccc--cccc
Confidence            344556666666666532 233211 1    112355666666654  244443322   34455566666643  2333


Q ss_pred             cccC-ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeC
Q 022501          130 LVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDG  173 (296)
Q Consensus       130 ~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~  173 (296)
                      ++.. +..+++|+.+.+..  .+..+... .+.+. .|+.+.+..
T Consensus        72 i~~~~F~~~~~l~~i~~~~--~~~~i~~~-~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   72 IGDNAFSNCTNLKNIDIPS--NITEIGSS-SFSNC-NLKEINIPS  112 (129)
T ss_dssp             E-TTTTTT-TTECEEEETT--T-BEEHTT-TTTT--T--EEE-TT
T ss_pred             cccccccccccccccccCc--cccEEchh-hhcCC-CceEEEECC
Confidence            3332 33356666666643  23332222 23443 566665543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.95  E-value=0.0029  Score=50.08  Aligned_cols=65  Identities=18%  Similarity=0.147  Sum_probs=39.2

Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCc
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRL  151 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l  151 (296)
                      +++++.|.+.+|..+.++......  +..++|+.|++++|+.+++-.. .+..+++|+.|.+.+.+.+
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence            666666777777666554333221  2456777777777777765443 3455677777777665443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=0.0028  Score=50.15  Aligned_cols=40  Identities=25%  Similarity=0.306  Sum_probs=21.1

Q ss_pred             CCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcc
Q 022501          194 FSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKM  234 (296)
Q Consensus       194 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l  234 (296)
                      .++|+.|++++|+.+++--.. ....+++|+.|++++.+.+
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~~v  189 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLPYV  189 (221)
T ss_pred             ccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCchhh
Confidence            556666666666655553221 1235566666666555433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.00  E-value=0.0057  Score=57.44  Aligned_cols=85  Identities=15%  Similarity=0.088  Sum_probs=64.8

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      -+++|+.|+|+.|.+..++.  +.+..+. |..|.+++|-..++-  -++++++|+.|+++.|-+.+...+..+..    
T Consensus       207 ~l~~LkhLDlsyN~L~~vp~--l~~~gc~-L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLws----  277 (1096)
T KOG1859|consen  207 RLPKLKHLDLSYNCLRHVPQ--LSMVGCK-LQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWS----  277 (1096)
T ss_pred             hcccccccccccchhccccc--cchhhhh-heeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHH----
Confidence            38999999999999988753  3332555 999999999877665  46889999999999886666655444333    


Q ss_pred             ccccceeEeccccc
Q 022501           85 LTQIKSLKLWELSN   98 (296)
Q Consensus        85 ~~~L~~L~l~~~~~   98 (296)
                      +.+|+.|.+.|.|-
T Consensus       278 Ls~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  278 LSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHHHHHHhhcCCcc
Confidence            77888888888653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=93.75  E-value=0.014  Score=43.49  Aligned_cols=58  Identities=17%  Similarity=0.300  Sum_probs=30.0

Q ss_pred             CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEeccc
Q 022501           33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWEL   96 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~   96 (296)
                      ..|+..++++|....+|..+...++.++.|++.+|.+.+++      .....++.||.|+++..
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP------eE~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP------EELAAMPALRSLNLRFN  110 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch------HHHhhhHHhhhcccccC
Confidence            34555555555555555555555555555555555444442      12233555555555543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.47  E-value=0.064  Score=24.50  Aligned_cols=12  Identities=25%  Similarity=0.672  Sum_probs=4.3

Q ss_pred             CccEEEeccCCC
Q 022501           34 NLKSLEIVSDKS   45 (296)
Q Consensus        34 ~L~~L~l~~~~~   45 (296)
                      +|+.|++++|..
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            444444444443

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.12  E-value=0.028  Score=27.64  Aligned_cols=12  Identities=58%  Similarity=0.847  Sum_probs=4.8

Q ss_pred             ceEEEeeccCcc
Q 022501            9 LEELKLSGKDIT   20 (296)
Q Consensus         9 L~~L~L~~~~~~   20 (296)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.53  E-value=0.18  Score=25.70  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=12.8

Q ss_pred             CCccEEEeccCCCCccChHHH
Q 022501           33 QNLKSLEIVSDKSDNFSIGFL   53 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~   53 (296)
                      ++|+.|++.+|.+..+|.+.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666666665544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.53  E-value=0.18  Score=25.70  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=12.8

Q ss_pred             CCccEEEeccCCCCccChHHH
Q 022501           33 QNLKSLEIVSDKSDNFSIGFL   53 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~   53 (296)
                      ++|+.|++.+|.+..+|.+.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            456666666666666665544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=91.04  E-value=0.019  Score=42.82  Aligned_cols=63  Identities=14%  Similarity=0.210  Sum_probs=51.9

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceE
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEI   72 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   72 (296)
                      ..|...+|++|.+++.+.....  .||-+..|++.+|.+.++|.+ ++.++.|+.|++..|.+...
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~--kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~  115 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTI--KFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAE  115 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhh--ccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccc
Confidence            4677789999999988544444  788999999999999999986 78899999999998865443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=87.92  E-value=0.34  Score=24.70  Aligned_cols=17  Identities=24%  Similarity=0.489  Sum_probs=11.9

Q ss_pred             CCCccEEeeccCCcccc
Q 022501          220 FPSLEDLFVIDCPKMMI  236 (296)
Q Consensus       220 ~~~L~~L~l~~c~~l~~  236 (296)
                      +++|+.|++++|+.+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46677777777776654

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=84.79  E-value=0.27  Score=44.98  Aligned_cols=90  Identities=18%  Similarity=0.208  Sum_probs=56.9

Q ss_pred             ccccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcC--CcccEEEEeccccceEeecCc--c
Q 022501            3 VQVIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRF--HNVERLKLRNSSYKEIFSNGE--V   78 (296)
Q Consensus         3 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~--~   78 (296)
                      +.-+|.+..+.|++|++-.+..-.--.+..|+|+.|+|++|........++.++  .-||+|.+.||.+-+-+..+.  +
T Consensus       214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv  293 (585)
T KOG3763|consen  214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYV  293 (585)
T ss_pred             hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHH
Confidence            445788999999998866663222222367999999999984443333344433  468899999986555444322  2


Q ss_pred             ccccCCccccceeE
Q 022501           79 EKQAGMLTQIKSLK   92 (296)
Q Consensus        79 ~~~~~~~~~L~~L~   92 (296)
                      ......+|+|..|+
T Consensus       294 ~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  294 SAIRELFPKLLRLD  307 (585)
T ss_pred             HHHHHhcchheeec
Confidence            22333577776664

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.60  E-value=0.95  Score=23.23  Aligned_cols=17  Identities=53%  Similarity=0.708  Sum_probs=12.2

Q ss_pred             cccceEEEeeccCcccc
Q 022501            6 IANLEELKLSGKDITMI   22 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~   22 (296)
                      +.+|++|++++|+|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            35777888887777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=80.27  E-value=0.62  Score=39.15  Aligned_cols=198  Identities=16%  Similarity=0.060  Sum_probs=95.5

Q ss_pred             cCCCccEEEeccCCCC-ccCh---HHHhcCCcccEEEEeccccceEeec------C--ccccccCCccccceeEeccccc
Q 022501           31 LFQNLKSLEIVSDKSD-NFSI---GFLQRFHNVERLKLRNSSYKEIFSN------G--EVEKQAGMLTQIKSLKLWELSN   98 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~-~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~------~--~~~~~~~~~~~L~~L~l~~~~~   98 (296)
                      .||+|+..++++|... ++|+   ..+.+-+.|+.|++.+|.+-.+-.-      .  +...-+..-|.|+....... .
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-R  168 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-R  168 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-h
Confidence            6899999999888776 5554   3566778899999998854222110      0  00111233556665554432 1


Q ss_pred             ccccccccCc-ccccCCCccEEEeccCccc----ccc-ccCccccCCccEEEeccCcCccccC--CcccccCCCCccEEE
Q 022501           99 LLHIWEQCYK-LDSVFQNLETLEIWWCNNL----INL-VPSSASFENLTTLEVSYCQRLKNLV--SSSTAKSLVCLMKLR  170 (296)
Q Consensus        99 l~~~~~~~~~-~~~~~~~L~~L~l~~~~~l----~~~-~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~  170 (296)
                      +..-+..-.. .+..=..|+.+.+..+..-    +.+ ......+++|+.|++.++.....-.  .......-+.|+.|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            1111000000 0111146777777653211    111 1134556788888888754211100  000122335688888


Q ss_pred             EeCccccceeccc-ccccccccccCCccceeeccCCcC----cceecC-CCccccCCCccEEeeccC
Q 022501          171 IDGCKLMTEIISS-EGDVEEDEIVFSRLKWLSLECLDS----LTSFCS-GNCTFKFPSLEDLFVIDC  231 (296)
Q Consensus       171 l~~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~----L~~l~~-~~~~~~~~~L~~L~l~~c  231 (296)
                      +++|-....-... ...  ..-..+|+|..|...+...    +.++.. ...-..+|-|..|.++++
T Consensus       249 lnDClls~~G~~~v~~~--f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN  313 (388)
T COG5238         249 LNDCLLSNEGVKSVLRR--FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN  313 (388)
T ss_pred             ccchhhccccHHHHHHH--hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence            8888543211000 000  0011267777777776432    111111 011235677777777764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 59/389 (15%), Positives = 114/389 (29%), Gaps = 140/389 (35%)

Query: 1   MDVQVIANLEELKLSGKDITMICHDHL---PKHLFQNLKSLEIVSDKSDN----FSIGFL 53
            D + + ++ +  LS ++I     DH+      +   L+    +  K +     F    L
Sbjct: 33  FDCKDVQDMPKSILSKEEI-----DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 54  Q--------RFHNV-------------ERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLK 92
           +                          +R +L N +  ++F+   V +      +++   
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQ-PYLKLRQ-A 143

Query: 93  LWELSN----LLH----------------------------IW---EQCYKLDSVFQNLE 117
           L EL      L+                              W   + C   ++V + L+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 118 TLEIWWCNNLI-NLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLR------ 170
            L       +  N    S    N+     S    L+ L+ S   ++  CL+ L       
Sbjct: 204 KL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVLLNVQNAK 257

Query: 171 -ID----GCK-LMT-------EIISSEG----DVEEDEIVFSR-------LKWLSLECLD 206
             +     CK L+T       + +S+       ++   +  +        LK+L     D
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 207 SLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVR---KNWGLDKGCWEG 263
                 + N     P       +     +I          +R+      NW     C + 
Sbjct: 318 LPREVLTTN-----P-----RRLS----II-------AESIRDGLATWDNW-KHVNCDK- 354

Query: 264 NLNTTIQKLCNNKLPPMVPFSSRFLYLRL 292
            L T I +   N L P      R ++ RL
Sbjct: 355 -LTTII-ESSLNVLEPAE---YRKMFDRL 378

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 26/175 (14%), Positives = 61/175 (34%), Gaps = 16/175 (9%)

Query: 6   IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVS---DKSDNFSIGFLQRFHNVERL 62
           + +L EL++    +      +      ++++ +  ++    +S      F     +V  L
Sbjct: 147 LTSLNELEIKALSLR-----NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 63  KLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIW 122
           +LR+++      +     +  + + +K L           + +  KL      L  +E  
Sbjct: 202 ELRDTNLARFQFSPLPVDE--VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 123 WC--NNLINLVPSS-ASFENLTTLEVSYCQRL---KNLVSSSTAKSLVCLMKLRI 171
            C  N L +  PS       L  +E    +RL   +  +    +     L K++ 
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 29/174 (16%), Positives = 62/174 (35%), Gaps = 32/174 (18%)

Query: 7   ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDN--FSIGFLQRFHNVERLKL 64
           A      L    +T +    + +   +++  L +    +     SI  ++   N+E L L
Sbjct: 22  AEGIRAVLQKASVTDV----VTQEELESITKLVV----AGEKVASIQGIEYLTNLEYLNL 73

Query: 65  RNSSYKEI--FSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIW 122
             +   +I   SN         L ++ +L +   +N +        L     NL  L + 
Sbjct: 74  NGNQITDISPLSN---------LVKLTNLYIG--TNKITDISALQNL----TNLRELYLN 118

Query: 123 WCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKL 176
              + I+ +   A+   + +L +     L +L   S   ++  L  L +   K+
Sbjct: 119 --EDNISDISPLANLTKMYSLNLGANHNLSDL---SPLSNMTGLNYLTVTESKV 167

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 46/234 (19%), Positives = 80/234 (34%), Gaps = 25/234 (10%)

Query: 8   NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDK--SDNFSIGFLQRFHNVERLKLR 65
            LEE++L    +T  C + + K  F+N K L + S +  S +          N++ L LR
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKS-FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164

Query: 66  NSSYKEIFSNGEVEKQAGMLTQIKSLKL------WELSNLLHIWEQCYKLDSVFQNLETL 119
            S   ++  +  +       T + SL +         S L  +  +C        NL++L
Sbjct: 165 ESDVDDVSGHW-LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC-------PNLKSL 216

Query: 120 EIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV--CLMKLRIDGCKLM 177
           ++     L  L         L  L              S     +  C     + G    
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 178 TEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDC 231
                    +     V SRL  L+L    ++ S+       + P L+ L+V+D 
Sbjct: 277 V-----PAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWVLDY 324

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 9e-04
 Identities = 25/178 (14%), Positives = 64/178 (35%), Gaps = 41/178 (23%)

Query: 7   ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNF--SIGFLQRFHNVERLKL 64
           A   +  L  K +T      + ++   ++  +      +++   S+  +Q   NV +L L
Sbjct: 21  AETIKDNLKKKSVTDA----VTQNELNSIDQIIA----NNSDIKSVQGIQYLPNVTKLFL 72

Query: 65  RNSSYKEIFSNGEVEKQAGMLTQIKSLK-LWELSNLLHIWEQCYKLDSV-----FQNLET 118
                                 ++  +K L  L NL  ++    K+  +      + L++
Sbjct: 73  NG-------------------NKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 113

Query: 119 LEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKL 176
           L +   +N I+ +        L +L +   + + ++   +    L  L  L ++  ++
Sbjct: 114 LSL--EHNGISDINGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQI 165

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.5 bits (92), Expect = 9e-04
 Identities = 31/171 (18%), Positives = 47/171 (27%), Gaps = 40/171 (23%)

Query: 8   NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNS 67
               L +    +T      LP  L  ++ +L I     DN           +  L++  +
Sbjct: 41  GNAVLNVGESGLT-----TLPDCLPAHITTLVI----PDNNLTSLPALPPELRTLEVSGN 91

Query: 68  SYKEIFSNGEVEKQAGMLTQIKSL--KLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN 125
                              Q+ SL      L  L         L ++   L  L I    
Sbjct: 92  -------------------QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWI--FG 130

Query: 126 NLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKL 176
           N +  +P       L  L VS  Q       +S       L KL     +L
Sbjct: 131 NQLTSLP--VLPPGLQELSVSDNQL------ASLPALPSELCKLWAYNNQL 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.83
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.81
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.8
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.8
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.79
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.78
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.78
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.78
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.78
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.78
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.77
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.77
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.76
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.76
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.76
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.74
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.73
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.73
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.72
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.7
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.7
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.7
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.7
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.7
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.68
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.68
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.67
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.67
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.67
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.67
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.66
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.66
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.65
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.64
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.63
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.62
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.62
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.61
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.61
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.56
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.55
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.54
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.53
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.53
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.53
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.52
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.51
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.5
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.49
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.49
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.48
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.47
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.45
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.43
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.43
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.43
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.41
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.4
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.39
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.39
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.39
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.38
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.35
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.35
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.34
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.33
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.33
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.31
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.3
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.29
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.29
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.28
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.28
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.26
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.24
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.24
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.24
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.17
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.16
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.02
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.02
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.98
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.97
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.96
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.94
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.94
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.93
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.9
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.89
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.85
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.8
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.78
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.76
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.76
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.74
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.71
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.41
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.33
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.06
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.03
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.96
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.68
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.68
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.4
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.95
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.64
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.01

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=8e-22  Score=170.80  Aligned_cols=225  Identities=19%  Similarity=0.234  Sum_probs=185.5

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .+++++|++++++++.++ ..+.  .+++|++|++++|.+..+|. .+.++++|++|++++|.+..+      +.....+
T Consensus        80 ~~~l~~L~L~~n~l~~lp-~~l~--~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~l------p~~l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFP-DQAF--RLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRAL------PASIASL  149 (328)
T ss_dssp             STTCCEEEEESSCCSSCC-SCGG--GGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCC------CGGGGGC
T ss_pred             ccceeEEEccCCCchhcC-hhhh--hCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccC------cHHHhcC
Confidence            578999999999999874 4556  79999999999999888875 568899999999999987744      2234669


Q ss_pred             cccceeEecccccccccccccC-----cccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccc
Q 022501           86 TQIKSLKLWELSNLLHIWEQCY-----KLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTA  160 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  160 (296)
                      ++|++|.+++|..+..++....     ..+..+++|+.|+++++ .+..+|..+..+++|++|++++|. +..++.  .+
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~--~l  225 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSALGP--AI  225 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCCCG--GG
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcCch--hh
Confidence            9999999999888777765411     01234899999999996 566888888889999999999865 555543  46


Q ss_pred             cCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC
Q 022501          161 KSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG  240 (296)
Q Consensus       161 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  240 (296)
                      ..+++|++|++++|...+.++...+.       +++|++|++++|..+..++..  +..+++|++|++++|+.++.+|..
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~-------l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~~  296 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRNYPPIFGG-------RAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSL  296 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCBCCCCTTC-------CCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCGG
T ss_pred             ccCCCCCEEECcCCcchhhhHHHhcC-------CCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhccHH
Confidence            78999999999999887776654444       999999999999888877663  578999999999999999999999


Q ss_pred             cccCCCcceEEcc
Q 022501          241 VLSTPRLREVRKN  253 (296)
Q Consensus       241 ~~~~~~L~~l~l~  253 (296)
                      +..+++|+.+++.
T Consensus       297 l~~L~~L~~l~l~  309 (328)
T 4fcg_A          297 IAQLPANCIILVP  309 (328)
T ss_dssp             GGGSCTTCEEECC
T ss_pred             HhhccCceEEeCC
Confidence            9999999999886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=3.2e-19  Score=160.55  Aligned_cols=232  Identities=16%  Similarity=0.191  Sum_probs=182.3

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .++++.|+|++|+++.+.+..+.  .+++|+.|++++|.+..++...+.++++|++|++++|.+..+.+     .....+
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l  135 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFK--HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPN-----GAFVYL  135 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTS--SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCT-----TTSCSC
T ss_pred             CCCCcEEEccCCcCCeeCHHHhh--CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCH-----hHhhcc
Confidence            46799999999999998777787  89999999999999999888889999999999999998776533     123458


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      ++|++|.++++. +..++...   +..+++|++|++.++..+..++. .+..+++|++|+++++ .++.++   .+..++
T Consensus       136 ~~L~~L~L~~N~-i~~~~~~~---~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~  207 (440)
T 3zyj_A          136 SKLKELWLRNNP-IESIPSYA---FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP---NLTPLI  207 (440)
T ss_dssp             SSCCEEECCSCC-CCEECTTT---TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC---CCTTCS
T ss_pred             ccCceeeCCCCc-ccccCHHH---hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc---ccCCCc
Confidence            999999999865 44444322   66789999999999888888776 4677899999999986 465554   367889


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc-cc
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV-LS  243 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~  243 (296)
                      +|++|++++|. +..+...      .+..+++|++|+++++. ++.+.... +..+++|+.|+++++ .++.+|... ..
T Consensus       208 ~L~~L~Ls~N~-l~~~~~~------~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~  277 (440)
T 3zyj_A          208 KLDELDLSGNH-LSAIRPG------SFQGLMHLQKLWMIQSQ-IQVIERNA-FDNLQSLVEINLAHN-NLTLLPHDLFTP  277 (440)
T ss_dssp             SCCEEECTTSC-CCEECTT------TTTTCTTCCEEECTTCC-CCEECTTS-STTCTTCCEEECTTS-CCCCCCTTTTSS
T ss_pred             ccCEEECCCCc-cCccChh------hhccCccCCEEECCCCc-eeEEChhh-hcCCCCCCEEECCCC-CCCccChhHhcc
Confidence            99999999985 4443221      23448999999999864 77776644 568899999999997 577776553 57


Q ss_pred             CCCcceEEcccCCcccccCCC
Q 022501          244 TPRLREVRKNWGLDKGCWEGN  264 (296)
Q Consensus       244 ~~~L~~l~l~~~~~~~~~~~~  264 (296)
                      +++|+.|+++  +..|.++.+
T Consensus       278 l~~L~~L~L~--~Np~~CdC~  296 (440)
T 3zyj_A          278 LHHLERIHLH--HNPWNCNCD  296 (440)
T ss_dssp             CTTCCEEECC--SSCEECSST
T ss_pred             ccCCCEEEcC--CCCccCCCC
Confidence            8999999998  444555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.83  E-value=3.1e-19  Score=161.13  Aligned_cols=232  Identities=18%  Similarity=0.157  Sum_probs=182.1

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .+++++|+|++|+++.+.+..+.  .+++|+.|++++|.+..++...+.++++|++|++++|.+..+.+     .....+
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l  146 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFR--HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS-----GAFEYL  146 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCT-----TTSSSC
T ss_pred             CCCccEEECcCCcCceECHHHcC--CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccCh-----hhhccc
Confidence            46899999999999998777788  89999999999999998887888999999999999998776533     123458


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      ++|++|.++++. +..++...   +..+++|+.|++++|..++.++.. +..+++|++|+++++ .+..++   .+..++
T Consensus       147 ~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~l~  218 (452)
T 3zyi_A          147 SKLRELWLRNNP-IESIPSYA---FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP---NLTPLV  218 (452)
T ss_dssp             TTCCEEECCSCC-CCEECTTT---TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCC---CCTTCT
T ss_pred             CCCCEEECCCCC-cceeCHhH---HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccc---cccccc
Confidence            999999999865 44554322   667899999999999888888764 677899999999986 455553   367889


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-ccc
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-VLS  243 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~  243 (296)
                      +|++|++++|......+..       +..+++|+.|+++++. ++.+.... +..+++|+.|+++++ .++.+|.. +..
T Consensus       219 ~L~~L~Ls~N~l~~~~~~~-------~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~  288 (452)
T 3zyi_A          219 GLEELEMSGNHFPEIRPGS-------FHGLSSLKKLWVMNSQ-VSLIERNA-FDGLASLVELNLAHN-NLSSLPHDLFTP  288 (452)
T ss_dssp             TCCEEECTTSCCSEECGGG-------GTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCCTTSSTT
T ss_pred             cccEEECcCCcCcccCccc-------ccCccCCCEEEeCCCc-CceECHHH-hcCCCCCCEEECCCC-cCCccChHHhcc
Confidence            9999999998643322322       3348999999999864 67776544 567899999999997 57777655 357


Q ss_pred             CCCcceEEcccCCcccccCCC
Q 022501          244 TPRLREVRKNWGLDKGCWEGN  264 (296)
Q Consensus       244 ~~~L~~l~l~~~~~~~~~~~~  264 (296)
                      +++|+.++++.  ..|.++.+
T Consensus       289 l~~L~~L~L~~--Np~~CdC~  307 (452)
T 3zyi_A          289 LRYLVELHLHH--NPWNCDCD  307 (452)
T ss_dssp             CTTCCEEECCS--SCEECSTT
T ss_pred             ccCCCEEEccC--CCcCCCCC
Confidence            89999999984  34555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.81  E-value=4.1e-19  Score=161.34  Aligned_cols=234  Identities=16%  Similarity=0.185  Sum_probs=110.8

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      ++|++|+|+++.++++.+..+.  .+++|++|++++|.+..++...+.++++|++|++++|.+..+.+     .....++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~  128 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFN--NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD-----YMFQDLY  128 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT-----TTTTTCT
T ss_pred             CCCCEEECCCCccCEeChhhhh--CCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh-----hHccccc
Confidence            3444444444444444333333  34444444444444444443333444444444444443333311     1112344


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      +|+.|.++++.. ..+...   .+..+++|++|+++++ .+..++. .+..+++|+.|+++++. +...... .+..+++
T Consensus       129 ~L~~L~l~~n~l-~~~~~~---~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~-~~~~l~~  201 (477)
T 2id5_A          129 NLKSLEVGDNDL-VYISHR---AFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDY-SFKRLYR  201 (477)
T ss_dssp             TCCEEEECCTTC-CEECTT---SSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC-CCEECTT-CSCSCTT
T ss_pred             cCCEEECCCCcc-ceeChh---hccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc-CcEeChh-hcccCcc
Confidence            555555544321 111111   1344555555555554 2222222 23344555555555432 2222211 2344555


Q ss_pred             ccEEEEeCccccceecccccc-----------------cccccccCCccceeeccCCcCcceecCCCccccCCCccEEee
Q 022501          166 LMKLRIDGCKLMTEIISSEGD-----------------VEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFV  228 (296)
Q Consensus       166 L~~L~l~~~~~~~~~~~~~~~-----------------~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l  228 (296)
                      |++|++++|..+..++.....                 ....+..+++|+.|+++++. ++.++... +..+++|+.|++
T Consensus       202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L  279 (477)
T 2id5_A          202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM-LHELLRLQEIQL  279 (477)
T ss_dssp             CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS-CTTCTTCCEEEC
T ss_pred             cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhh-ccccccCCEEEC
Confidence            666666555444333221100                 00123346777888887764 56655433 457788888888


Q ss_pred             ccCCccccccCCcccCCCcceEEcccCC
Q 022501          229 IDCPKMMIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       229 ~~c~~l~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      .++..-...|..+..+++|+.|+++.+.
T Consensus       280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             CSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred             CCCccceECHHHhcCcccCCEEECCCCc
Confidence            8875333345566678889999887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.81  E-value=1.5e-18  Score=148.68  Aligned_cols=229  Identities=14%  Similarity=0.048  Sum_probs=168.7

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccC--hHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFS--IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   83 (296)
                      .++|++|++++++++.++...+.  .+++|++|++++|.+....  +..+..+++|++|++++|.+..+..      ...
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~------~~~   98 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFD--KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS------NFL   98 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTT--TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE------EEE
T ss_pred             CCCCCEEECCCCccCccCHhHhh--ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh------hcC
Confidence            46899999999999988666667  8999999999999887542  2345679999999999998776533      234


Q ss_pred             CccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccc-cCCcccccC
Q 022501           84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKN-LVSSSTAKS  162 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~  162 (296)
                      .+++|++|.++++.. ..++.  ...+..+++|+.|+++++......+..+..+++|++|+++++. +.+ ..+ ..+..
T Consensus        99 ~l~~L~~L~l~~n~l-~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~~  173 (306)
T 2z66_A           99 GLEQLEHLDFQHSNL-KQMSE--FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLP-DIFTE  173 (306)
T ss_dssp             TCTTCCEEECTTSEE-ESSTT--TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEEC-SCCTT
T ss_pred             CCCCCCEEECCCCcc-ccccc--chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccch-hHHhh
Confidence            589999999998643 33322  0116678999999999986555555567778999999999875 333 222 24678


Q ss_pred             CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501          163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL  242 (296)
Q Consensus       163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  242 (296)
                      +++|++|++++|......+..       +..+++|++|+++++. ++.++... +..+++|+.|++++|......|..+.
T Consensus       174 l~~L~~L~Ls~n~l~~~~~~~-------~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          174 LRNLTFLDLSQCQLEQLSPTA-------FNSLSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             CTTCCEEECTTSCCCEECTTT-------TTTCTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             CcCCCEEECCCCCcCCcCHHH-------hcCCCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCCCCcccCHHHHH
Confidence            899999999998543222222       3348999999999875 56654433 46789999999999865555666666


Q ss_pred             cC-CCcceEEcccCC
Q 022501          243 ST-PRLREVRKNWGL  256 (296)
Q Consensus       243 ~~-~~L~~l~l~~~~  256 (296)
                      .+ ++|++++++.+.
T Consensus       245 ~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          245 HFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCCTTCCEEECTTCC
T ss_pred             hhhccCCEEEccCCC
Confidence            76 499999998544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.81  E-value=1.4e-18  Score=157.76  Aligned_cols=231  Identities=20%  Similarity=0.131  Sum_probs=155.5

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|+|++|.++.++...+.  .+++|++|++++|.+..+++..+..+++|++|++.+|.+..+.+.     ....+
T Consensus        79 l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l  151 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLIPLGVFT--GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR-----AFSGL  151 (477)
T ss_dssp             CTTCCEEECCSSCCCSCCTTSST--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTT-----SSTTC
T ss_pred             CccCCEEECCCCcCCccCccccc--CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChh-----hccCC
Confidence            68899999999988888666666  789999999999988877767788899999999998877665431     12336


Q ss_pred             cccceeEeccccccccccccc---------------------CcccccCCCccEEEeccCccccccccCccccCCccEEE
Q 022501           86 TQIKSLKLWELSNLLHIWEQC---------------------YKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLE  144 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~---------------------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~  144 (296)
                      ++|+.|.++++. +..++...                     ...+..+++|+.|++++|..+..++.......+|+.|+
T Consensus       152 ~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  230 (477)
T 2id5_A          152 NSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS  230 (477)
T ss_dssp             TTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             CCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence            666666666542 22221110                     00134455666666666555555555444445666666


Q ss_pred             eccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCcc
Q 022501          145 VSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLE  224 (296)
Q Consensus       145 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~  224 (296)
                      ++++ .++.++. ..+..+++|++|++++|. +..+...      .+..+++|++|+++++. ++.+.... +..+++|+
T Consensus       231 l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~  299 (477)
T 2id5_A          231 ITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEGS------MLHELLRLQEIQLVGGQ-LAVVEPYA-FRGLNYLR  299 (477)
T ss_dssp             EESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECTT------SCTTCTTCCEEECCSSC-CSEECTTT-BTTCTTCC
T ss_pred             CcCC-cccccCH-HHhcCccccCeeECCCCc-CCccChh------hccccccCCEEECCCCc-cceECHHH-hcCcccCC
Confidence            6654 3443332 235677888888888765 3333221      24458999999999874 67765544 56889999


Q ss_pred             EEeeccCCccccccCC-cccCCCcceEEcccCC
Q 022501          225 DLFVIDCPKMMIFSFG-VLSTPRLREVRKNWGL  256 (296)
Q Consensus       225 ~L~l~~c~~l~~~~~~-~~~~~~L~~l~l~~~~  256 (296)
                      .|++++| .++.++.. +..+++|+.|+++.+.
T Consensus       300 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          300 VLNVSGN-QLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             EEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             EEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence            9999997 57777664 3577999999997543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.81  E-value=6.9e-19  Score=152.30  Aligned_cols=204  Identities=17%  Similarity=0.228  Sum_probs=163.4

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCc----cccc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGE----VEKQ   81 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~   81 (296)
                      +++|++|++++|.+..+ +..++  .+++|++|++++|.+..+|. .+.++++|++|++++|...+..+...    +...
T Consensus       103 l~~L~~L~L~~n~l~~l-p~~~~--~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMEL-PDTMQ--QFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GTTCSEEEEESSCCCCC-CSCGG--GGTTCSEEEEESCCCCCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             CCCCCEEECCCCCccch-hHHHh--ccCCCCEEECCCCccccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            78999999999999876 45566  89999999999999888876 57889999999999985544333211    0111


Q ss_pred             cCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCccccc
Q 022501           82 AGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAK  161 (296)
Q Consensus        82 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  161 (296)
                      ...+++|++|.++++. +..++..    +..+++|+.|++++| .+..++..+..+++|++|++++|......+.  .+.
T Consensus       179 ~~~l~~L~~L~L~~n~-l~~lp~~----l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~  250 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTG-IRSLPAS----IANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP--IFG  250 (328)
T ss_dssp             EEESTTCCEEEEEEEC-CCCCCGG----GGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC--CTT
T ss_pred             hccCCCCCEEECcCCC-cCcchHh----hcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH--Hhc
Confidence            2348999999999864 4466554    778999999999997 4556777788899999999999887766542  467


Q ss_pred             CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeecc
Q 022501          162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVID  230 (296)
Q Consensus       162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~  230 (296)
                      .+++|++|++++|...+.++...+.       +++|++|++++|+.+..++.  .+..+++|+.+.+..
T Consensus       251 ~l~~L~~L~L~~n~~~~~~p~~~~~-------l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          251 GRAPLKRLILKDCSNLLTLPLDIHR-------LTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPP  310 (328)
T ss_dssp             CCCCCCEEECTTCTTCCBCCTTGGG-------CTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCG
T ss_pred             CCCCCCEEECCCCCchhhcchhhhc-------CCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCH
Confidence            8999999999999988877765444       99999999999998888876  357899999998865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=3e-19  Score=153.83  Aligned_cols=219  Identities=16%  Similarity=0.118  Sum_probs=165.7

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|++++++++++.+..+.  .+++|++|++++|.+...++  +..+++|++|++++|.+.++..          
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----------   97 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----------   97 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHT--TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----------
T ss_pred             cCCCCCEEECcCCccCcCCHHHhh--CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----------
Confidence            356899999999888887655666  78999999998888775553  6788999999999988777644          


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      .++|+.|.++++. +..++      ...+++|++|+++++......+..+..+++|++|+++++ .+....+......++
T Consensus        98 ~~~L~~L~l~~n~-l~~~~------~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~  169 (317)
T 3o53_A           98 GPSIETLHAANNN-ISRVS------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSD  169 (317)
T ss_dssp             CTTCCEEECCSSC-CSEEE------ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTT
T ss_pred             CCCcCEEECCCCc-cCCcC------ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccC
Confidence            5889999998764 33333      234678999999987544333446677899999999986 455544333445789


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccC
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLST  244 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  244 (296)
                      +|++|++++|. ++.+...        ..+++|++|+++++. ++.++..  +..+++|+.|++++| .++.+|..+..+
T Consensus       170 ~L~~L~L~~N~-l~~~~~~--------~~l~~L~~L~Ls~N~-l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~l  236 (317)
T 3o53_A          170 TLEHLNLQYNF-IYDVKGQ--------VVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFS  236 (317)
T ss_dssp             TCCEEECTTSC-CCEEECC--------CCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCC
T ss_pred             cCCEEECCCCc-Ccccccc--------cccccCCEEECCCCc-CCcchhh--hcccCcccEEECcCC-cccchhhHhhcC
Confidence            99999999986 4444322        128999999999974 7777663  578899999999997 677899888888


Q ss_pred             CCcceEEcccCCcc
Q 022501          245 PRLREVRKNWGLDK  258 (296)
Q Consensus       245 ~~L~~l~l~~~~~~  258 (296)
                      ++|+.++++.+...
T Consensus       237 ~~L~~L~l~~N~~~  250 (317)
T 3o53_A          237 QNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTCCEEECTTCCCB
T ss_pred             CCCCEEEccCCCcc
Confidence            99999999865543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=2.1e-18  Score=149.35  Aligned_cols=221  Identities=18%  Similarity=0.199  Sum_probs=147.3

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .+++++|++++++++++.+..+.  .+++|++|++++|.+..+.+..+.++++|++|++++|.+..+..        ..+
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~--------~~~  120 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--------KMP  120 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS--------SCC
T ss_pred             CCCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh--------hhc
Confidence            46788888888888888665666  78899999998888887766677888899999998887665422        123


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCcccc--ccccCccccCCccEEEeccCcCccccCCcccccCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLI--NLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSL  163 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l  163 (296)
                      ++|++|.++++.. ..++...   +..+++|+.|+++++....  ..+..+..+++|++|+++++. ++.++.    ...
T Consensus       121 ~~L~~L~l~~n~l-~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~----~~~  191 (330)
T 1xku_A          121 KTLQELRVHENEI-TKVRKSV---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ----GLP  191 (330)
T ss_dssp             TTCCEEECCSSCC-CBBCHHH---HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS----SCC
T ss_pred             ccccEEECCCCcc-cccCHhH---hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCc----ccc
Confidence            6788888876542 2322211   4557778888887764321  233345667788888887653 444432    123


Q ss_pred             CCccEEEEeCcccccee-cccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501          164 VCLMKLRIDGCKLMTEI-ISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL  242 (296)
Q Consensus       164 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  242 (296)
                      ++|++|++++|.. +.+ +..       +..+++|++|+++++. ++.++... +..+++|++|++++| .++.+|..+.
T Consensus       192 ~~L~~L~l~~n~l-~~~~~~~-------~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~lp~~l~  260 (330)
T 1xku_A          192 PSLTELHLDGNKI-TKVDAAS-------LKGLNNLAKLGLSFNS-ISAVDNGS-LANTPHLRELHLNNN-KLVKVPGGLA  260 (330)
T ss_dssp             TTCSEEECTTSCC-CEECTGG-------GTTCTTCCEEECCSSC-CCEECTTT-GGGSTTCCEEECCSS-CCSSCCTTTT
T ss_pred             ccCCEEECCCCcC-CccCHHH-------hcCCCCCCEEECCCCc-CceeChhh-ccCCCCCCEEECCCC-cCccCChhhc
Confidence            6788888877653 322 221       2337788888888764 56655433 456788888888876 4667777777


Q ss_pred             cCCCcceEEcccCC
Q 022501          243 STPRLREVRKNWGL  256 (296)
Q Consensus       243 ~~~~L~~l~l~~~~  256 (296)
                      .+++|++++++.+.
T Consensus       261 ~l~~L~~L~l~~N~  274 (330)
T 1xku_A          261 DHKYIQVVYLHNNN  274 (330)
T ss_dssp             TCSSCCEEECCSSC
T ss_pred             cCCCcCEEECCCCc
Confidence            77888888886544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=5.6e-19  Score=151.89  Aligned_cols=227  Identities=13%  Similarity=0.009  Sum_probs=165.4

Q ss_pred             ccceEEEeeccCccc--cccCCCCCCcCCCccEEEecc-CCCC-ccChHHHhcCCcccEEEEeccccceEeecCcccccc
Q 022501            7 ANLEELKLSGKDITM--ICHDHLPKHLFQNLKSLEIVS-DKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQA   82 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~--~~~~~~~~~~l~~L~~L~l~~-~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   82 (296)
                      .++++|+++++++.+  ..+..+.  .+++|++|++++ |... .+| ..+.++++|++|++++|.+.+..+.     ..
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~-----~~  121 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGAIPD-----FL  121 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEECCG-----GG
T ss_pred             ceEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCeeCCcCCH-----HH
Confidence            579999999998886  4456666  899999999984 6655 555 4678899999999999987755432     23


Q ss_pred             CCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccC-CccEEEeccCcCccccCCccccc
Q 022501           83 GMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFE-NLTTLEVSYCQRLKNLVSSSTAK  161 (296)
Q Consensus        83 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~  161 (296)
                      ..+++|++|+++++.....++..    +..+++|++|+++++.....+|..+..++ +|++|+++++. +....+. .+.
T Consensus       122 ~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~-~~~  195 (313)
T 1ogq_A          122 SQIKTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPP-TFA  195 (313)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCG-GGG
T ss_pred             hCCCCCCEEeCCCCccCCcCChH----HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCCh-HHh
Confidence            55899999999987544344444    67789999999999765557777777777 89999998864 4322222 345


Q ss_pred             CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc
Q 022501          162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV  241 (296)
Q Consensus       162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  241 (296)
                      .++ |++|++++|......+..       +..+++|+.|+++++. ++.....  +..+++|++|++++|.....+|..+
T Consensus       196 ~l~-L~~L~Ls~N~l~~~~~~~-------~~~l~~L~~L~L~~N~-l~~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l  264 (313)
T 1ogq_A          196 NLN-LAFVDLSRNMLEGDASVL-------FGSDKNTQKIHLAKNS-LAFDLGK--VGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             GCC-CSEEECCSSEEEECCGGG-------CCTTSCCSEEECCSSE-ECCBGGG--CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             CCc-ccEEECcCCcccCcCCHH-------HhcCCCCCEEECCCCc-eeeecCc--ccccCCCCEEECcCCcccCcCChHH
Confidence            555 999999998654333332       3348899999999875 3433222  3567889999999986555788888


Q ss_pred             ccCCCcceEEcccCCcc
Q 022501          242 LSTPRLREVRKNWGLDK  258 (296)
Q Consensus       242 ~~~~~L~~l~l~~~~~~  258 (296)
                      ..+++|+.|+++.+...
T Consensus       265 ~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          265 TQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             GGCTTCCEEECCSSEEE
T ss_pred             hcCcCCCEEECcCCccc
Confidence            88899999999865543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.80  E-value=5.1e-19  Score=152.18  Aligned_cols=225  Identities=13%  Similarity=0.040  Sum_probs=170.6

Q ss_pred             ccccceEEEeec-cCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501            5 VIANLEELKLSG-KDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         5 ~l~~L~~L~L~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   83 (296)
                      .+++|++|++++ +++.+..+..+.  .+++|++|++++|.+....+..+.++++|++|++++|.+.+..+     ....
T Consensus        74 ~l~~L~~L~L~~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-----~~~~  146 (313)
T 1ogq_A           74 NLPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-----PSIS  146 (313)
T ss_dssp             GCTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-----GGGG
T ss_pred             CCCCCCeeeCCCCCcccccCChhHh--cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCC-----hHHh
Confidence            378999999996 888866566677  89999999999998884333467899999999999997764332     2335


Q ss_pred             CccccceeEecccccccccccccCcccccCC-CccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccC
Q 022501           84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQ-NLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKS  162 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  162 (296)
                      .+++|++|.++++.....++..    +..++ +|+.|+++++......+..+..++ |+.|+++++. ++...+ ..+..
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~----l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~-~~~~~  219 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDAS-VLFGS  219 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGG----GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCG-GGCCT
T ss_pred             cCCCCCeEECcCCcccCcCCHH----HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCC-HHHhc
Confidence            6999999999987654355544    66676 899999999865556777766666 9999999864 443332 35678


Q ss_pred             CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcc-eecCCCccccCCCccEEeeccCCccccccCCc
Q 022501          163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLT-SFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV  241 (296)
Q Consensus       163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~-~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  241 (296)
                      +++|++|++++|.....++.        +..+++|++|+++++. ++ .++.  .+..+++|+.|++++|+....+|.. 
T Consensus       220 l~~L~~L~L~~N~l~~~~~~--------~~~l~~L~~L~Ls~N~-l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~~-  287 (313)
T 1ogq_A          220 DKNTQKIHLAKNSLAFDLGK--------VGLSKNLNGLDLRNNR-IYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQG-  287 (313)
T ss_dssp             TSCCSEEECCSSEECCBGGG--------CCCCTTCCEEECCSSC-CEECCCG--GGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred             CCCCCEEECCCCceeeecCc--------ccccCCCCEEECcCCc-ccCcCCh--HHhcCcCCCEEECcCCcccccCCCC-
Confidence            99999999999865433332        2238999999999976 45 3333  3578899999999998655578776 


Q ss_pred             ccCCCcceEEcccC
Q 022501          242 LSTPRLREVRKNWG  255 (296)
Q Consensus       242 ~~~~~L~~l~l~~~  255 (296)
                      ..+++|+.++++.+
T Consensus       288 ~~l~~L~~l~l~~N  301 (313)
T 1ogq_A          288 GNLQRFDVSAYANN  301 (313)
T ss_dssp             TTGGGSCGGGTCSS
T ss_pred             ccccccChHHhcCC
Confidence            58899999988743

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.80  E-value=1.1e-18  Score=167.43  Aligned_cols=157  Identities=17%  Similarity=0.039  Sum_probs=85.6

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|+++++.+.+..+..+.  .+++|+.|++++|.+....+..+..+++|++|++.+|.+.+..+     .....+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-----~~~~~l  465 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-----QELMYV  465 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC-----GGGGGC
T ss_pred             cCCccEEECCCCccccccCHHHh--cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC-----HHHcCC
Confidence            56777777777777655455555  67777777777776653333456667777777777775553322     112335


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      ++|+.|.++++.....++..    +..+++|+.|++++|...+.+|..+..+++|++|++++|......+  ..+..+++
T Consensus       466 ~~L~~L~L~~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p--~~l~~l~~  539 (768)
T 3rgz_A          466 KTLETLILDFNDLTGEIPSG----LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP--AELGDCRS  539 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGG----GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC--GGGGGCTT
T ss_pred             CCceEEEecCCcccCcCCHH----HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC--HHHcCCCC
Confidence            55666666555433333332    4445555555555554444444444555555555555543222222  12344555


Q ss_pred             ccEEEEeCcc
Q 022501          166 LMKLRIDGCK  175 (296)
Q Consensus       166 L~~L~l~~~~  175 (296)
                      |+.|++++|.
T Consensus       540 L~~L~Ls~N~  549 (768)
T 3rgz_A          540 LIWLDLNTNL  549 (768)
T ss_dssp             CCEEECCSSE
T ss_pred             CCEEECCCCc
Confidence            5555555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.80  E-value=3.3e-18  Score=159.78  Aligned_cols=159  Identities=18%  Similarity=0.201  Sum_probs=67.0

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|+++++.++.++ ..+.  .+++|++|++++|.+..+++..+..+++|++|++.+|.+....+..    ....+
T Consensus       277 l~~L~~L~l~~n~l~~lp-~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~l  349 (606)
T 3t6q_A          277 FSGLQELDLTATHLSELP-SGLV--GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG----CLENL  349 (606)
T ss_dssp             CTTCSEEECTTSCCSCCC-SSCC--SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS----TTTTC
T ss_pred             ccCCCEEeccCCccCCCC-hhhc--ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh----hhhcc
Confidence            345555555555544442 2233  4555555555555554443334445555555555554332211111    12335


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      ++|++|.++++... .+.. ....+..+++|++|+++++......+..+..+++|++|+++++. +....+...+..+++
T Consensus       350 ~~L~~L~l~~n~l~-~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          350 ENLRELDLSHDDIE-TSDC-CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHL  426 (606)
T ss_dssp             TTCCEEECCSSCCC-EEEE-STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTT
T ss_pred             CcCCEEECCCCccc-cccC-cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc-CCCcccchhhhCccc
Confidence            55555555544321 1100 00013445555555555543222223334444555555555432 222211112344455


Q ss_pred             ccEEEEeCc
Q 022501          166 LMKLRIDGC  174 (296)
Q Consensus       166 L~~L~l~~~  174 (296)
                      |++|++++|
T Consensus       427 L~~L~l~~n  435 (606)
T 3t6q_A          427 LKVLNLSHS  435 (606)
T ss_dssp             CCEEECTTC
T ss_pred             CCEEECCCC
Confidence            555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=1.2e-18  Score=158.59  Aligned_cols=218  Identities=16%  Similarity=0.111  Sum_probs=171.0

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|+|+++.+.++.+..+.  .+++|++|++++|.+...++  +..+++|++|++++|.+..+.+          
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----------   97 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLA--PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----------   97 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGT--TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----------
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHh--CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----------
Confidence            356999999999999988777777  89999999999998875554  7889999999999998887754          


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      .++|+.|.++++.. ..++      ...+++|+.|+++++......+..+..+++|+.|+++++. ++...+......++
T Consensus        98 ~~~L~~L~L~~N~l-~~~~------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~  169 (487)
T 3oja_A           98 GPSIETLHAANNNI-SRVS------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSD  169 (487)
T ss_dssp             CTTCCEEECCSSCC-CCEE------ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTT
T ss_pred             CCCcCEEECcCCcC-CCCC------ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCC
Confidence            58999999998653 3332      2346889999999975544445567778999999999864 55544433345789


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccC
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLST  244 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  244 (296)
                      +|++|++++|. +..++..        ..+++|+.|+++++. ++.++..  +..+++|+.|++++| .+..+|..+..+
T Consensus       170 ~L~~L~Ls~N~-l~~~~~~--------~~l~~L~~L~Ls~N~-l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~l~~l  236 (487)
T 3oja_A          170 TLEHLNLQYNF-IYDVKGQ--------VVFAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFS  236 (487)
T ss_dssp             TCCEEECTTSC-CCEEECC--------CCCTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCC
T ss_pred             cccEEecCCCc-ccccccc--------ccCCCCCEEECCCCC-CCCCCHh--HcCCCCccEEEecCC-cCcccchhhccC
Confidence            99999999986 4444321        238999999999974 7777664  578899999999997 577889888888


Q ss_pred             CCcceEEcccCCc
Q 022501          245 PRLREVRKNWGLD  257 (296)
Q Consensus       245 ~~L~~l~l~~~~~  257 (296)
                      ++|+.++++.+..
T Consensus       237 ~~L~~L~l~~N~l  249 (487)
T 3oja_A          237 QNLEHFDLRGNGF  249 (487)
T ss_dssp             TTCCEEECTTCCB
T ss_pred             CCCCEEEcCCCCC
Confidence            9999999986543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.79  E-value=2.7e-18  Score=151.98  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=48.0

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|+++++.++++.+..+.  .+++|++|++++|.+..+++..++++++|++|++++|.+..+.+     .....+
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~l  140 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-----GIFHNT  140 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTC
T ss_pred             cccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH-----HHhcCC
Confidence            45666666666666665544555  56666666666666666655555666666666666665543321     001235


Q ss_pred             cccceeEeccc
Q 022501           86 TQIKSLKLWEL   96 (296)
Q Consensus        86 ~~L~~L~l~~~   96 (296)
                      ++|++|.++++
T Consensus       141 ~~L~~L~L~~n  151 (390)
T 3o6n_A          141 PKLTTLSMSNN  151 (390)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCcEEECCCC
Confidence            55555555544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.79  E-value=7e-19  Score=153.76  Aligned_cols=230  Identities=18%  Similarity=0.163  Sum_probs=155.3

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .++|++|++++++++++.+..+.  .+++|++|++++|.+..+++..+.++++|++|++++|.+.++.+     .....+
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l  123 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQ--RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-----SWFKPL  123 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-----HHHTTC
T ss_pred             cccCcEEECCCCcCcccCHHHhc--cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH-----hHhCCC
Confidence            46888888888888887655666  78888888888888887776677888888888888887665432     112447


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      ++|++|+++++. +..++..  ..+..+++|++|+++++..++.++. .+..+++|++|+++++. +....+. .+..++
T Consensus       124 ~~L~~L~L~~n~-l~~l~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~l~~l~  198 (353)
T 2z80_A          124 SSLTFLNLLGNP-YKTLGET--SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPK-SLKSIQ  198 (353)
T ss_dssp             TTCSEEECTTCC-CSSSCSS--CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTT-TTTTCS
T ss_pred             ccCCEEECCCCC-CcccCch--hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHH-HHhccc
Confidence            888888888753 3344330  1155678888888888765665543 45667888888888764 4433222 356677


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCC------------------------------
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSG------------------------------  214 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~------------------------------  214 (296)
                      +|++|++++|.. +.++...      ...+++|++|+++++. ++.+...                              
T Consensus       199 ~L~~L~l~~n~l-~~~~~~~------~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~  270 (353)
T 2z80_A          199 NVSHLILHMKQH-ILLLEIF------VDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM  270 (353)
T ss_dssp             EEEEEEEECSCS-TTHHHHH------HHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred             cCCeecCCCCcc-ccchhhh------hhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhH
Confidence            888888887653 2222211      1126677777777643 2222110                              


Q ss_pred             CccccCCCccEEeeccCCccccccCCc-ccCCCcceEEcccCC
Q 022501          215 NCTFKFPSLEDLFVIDCPKMMIFSFGV-LSTPRLREVRKNWGL  256 (296)
Q Consensus       215 ~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~l~~~~  256 (296)
                      ..+..+++|+.|++++| .++.+|..+ ..+++|++++++.+.
T Consensus       271 ~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          271 KLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             HHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            01346789999999997 577888875 688999999998554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=3.8e-18  Score=159.26  Aligned_cols=108  Identities=12%  Similarity=0.053  Sum_probs=66.6

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|+++++.++++.+..+.  .+++|+.|++++|.+..+++..++.+++|++|++++|.+..+.+     .....+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~l  146 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR-----GIFHNT  146 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTC
T ss_pred             CCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH-----HHhccC
Confidence            56777777777777777655666  67777777777777777766666777777777777776654422     011346


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC  124 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~  124 (296)
                      ++|++|.++++.. ..++...   +..+++|+.|+++++
T Consensus       147 ~~L~~L~Ls~N~l-~~~~~~~---~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          147 PKLTTLSMSNNNL-ERIEDDT---FQATTSLQNLQLSSN  181 (597)
T ss_dssp             TTCCEEECCSSCC-CBCCTTT---TTTCTTCCEEECTTS
T ss_pred             CCCCEEEeeCCcC-CCCChhh---hhcCCcCcEEECcCC
Confidence            6666666666532 2221111   344555566655554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.78  E-value=3.6e-18  Score=153.61  Aligned_cols=205  Identities=23%  Similarity=0.239  Sum_probs=164.6

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|+|++|.++.+.+..+.  .+++|++|++++|.+..++...+..+++|++|++++|.+..+.+.     ....
T Consensus        86 ~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-----~~~~  158 (440)
T 3zyj_A           86 HLRHLEILQLSRNHIRTIEIGAFN--GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY-----AFNR  158 (440)
T ss_dssp             SCSSCCEEECCSSCCCEECGGGGT--TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT-----TTTT
T ss_pred             CCCCCCEEECCCCcCCccChhhcc--CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHH-----Hhhh
Confidence            478999999999999998777777  899999999999999999988889999999999999988766431     2355


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      +++|+.|.++++..+..++...   +..+++|+.|+++++ .+..++ .+..+++|+.|+++++ .++...+. .+..++
T Consensus       159 l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~  231 (440)
T 3zyj_A          159 IPSLRRLDLGELKRLSYISEGA---FEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRPG-SFQGLM  231 (440)
T ss_dssp             CTTCCEEECCCCTTCCEECTTT---TTTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-CCCEECTT-TTTTCT
T ss_pred             CcccCEeCCCCCCCcceeCcch---hhcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-ccCccChh-hhccCc
Confidence            9999999999988887775533   567899999999987 566665 4667899999999986 46655443 567899


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP  232 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~  232 (296)
                      +|++|++++|.. ..+...      .+..+++|+.|+++++ +++.++... +..+++|+.|++.+++
T Consensus       232 ~L~~L~L~~n~l-~~~~~~------~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          232 HLQKLWMIQSQI-QVIERN------AFDNLQSLVEINLAHN-NLTLLPHDL-FTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TCCEEECTTCCC-CEECTT------SSTTCTTCCEEECTTS-CCCCCCTTT-TSSCTTCCEEECCSSC
T ss_pred             cCCEEECCCCce-eEEChh------hhcCCCCCCEEECCCC-CCCccChhH-hccccCCCEEEcCCCC
Confidence            999999999753 333221      2445899999999997 477776544 5678999999999876

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.78  E-value=2.1e-18  Score=165.51  Aligned_cols=233  Identities=16%  Similarity=0.065  Sum_probs=128.2

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCc--------
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGE--------   77 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------   77 (296)
                      ++|++|++++|.+.+..+..+.  .+++|++|++++|... .+|...+.++++|++|++.+|.+.+..+...        
T Consensus       294 ~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~  371 (768)
T 3rgz_A          294 DTLTGLDLSGNHFYGAVPPFFG--SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL  371 (768)
T ss_dssp             TTCSEEECCSSEEEECCCGGGG--GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS
T ss_pred             CcCCEEECcCCcCCCccchHHh--cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc
Confidence            5555555555555544344444  5566666666555554 5555555566666666666664443222100        


Q ss_pred             -c-----------ccccC--CccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEE
Q 022501           78 -V-----------EKQAG--MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTL  143 (296)
Q Consensus        78 -~-----------~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L  143 (296)
                       +           .....  .+++|+.|.++++.....++..    +..+++|+.|+++++...+..|..+..+++|+.|
T Consensus       372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  447 (768)
T 3rgz_A          372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL  447 (768)
T ss_dssp             EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH----HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence             0           00000  0233444444333222222222    4455566666666654444455555556666666


Q ss_pred             EeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCc
Q 022501          144 EVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSL  223 (296)
Q Consensus       144 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L  223 (296)
                      ++++|......+  ..+..+++|++|++++|.....++..       +..+++|++|+++++.-...++.  .+..+++|
T Consensus       448 ~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~-------l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L  516 (768)
T 3rgz_A          448 KLWLNMLEGEIP--QELMYVKTLETLILDFNDLTGEIPSG-------LSNCTNLNWISLSNNRLTGEIPK--WIGRLENL  516 (768)
T ss_dssp             ECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCCSCCCGG-------GGGCTTCCEEECCSSCCCSCCCG--GGGGCTTC
T ss_pred             ECCCCcccCcCC--HHHcCCCCceEEEecCCcccCcCCHH-------HhcCCCCCEEEccCCccCCcCCh--HHhcCCCC
Confidence            666554222222  13455666777777666544334333       33478888888888763323433  34678889


Q ss_pred             cEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501          224 EDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       224 ~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      ++|++++|.....+|..+..+++|+.++++.+.
T Consensus       517 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             CEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             CEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            999999887666788888888899999887543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.78  E-value=9.3e-18  Score=151.34  Aligned_cols=112  Identities=16%  Similarity=0.178  Sum_probs=66.9

Q ss_pred             CccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceec
Q 022501          133 SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFC  212 (296)
Q Consensus       133 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~  212 (296)
                      .+..+++|++|+++++. +....+. .+..+++|++|++++|.. +.+...      .+..+++|++|+++++. ++.+.
T Consensus       294 ~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~l-~~~~~~------~~~~l~~L~~L~Ls~N~-l~~~~  363 (455)
T 3v47_A          294 VFSHFTDLEQLTLAQNE-INKIDDN-AFWGLTHLLKLNLSQNFL-GSIDSR------MFENLDKLEVLDLSYNH-IRALG  363 (455)
T ss_dssp             TTTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCC-CEECGG------GGTTCTTCCEEECCSSC-CCEEC
T ss_pred             hcccCCCCCEEECCCCc-ccccChh-HhcCcccCCEEECCCCcc-CCcChh------HhcCcccCCEEECCCCc-ccccC
Confidence            34455666666666543 3333222 345566777777766643 222211      12337788888888764 56654


Q ss_pred             CCCccccCCCccEEeeccCCccccccCCc-ccCCCcceEEcccCC
Q 022501          213 SGNCTFKFPSLEDLFVIDCPKMMIFSFGV-LSTPRLREVRKNWGL  256 (296)
Q Consensus       213 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~l~~~~  256 (296)
                      ... +..+++|++|++++| .++.+|... ..+++|++++++.+.
T Consensus       364 ~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          364 DQS-FLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             TTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hhh-ccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence            433 456788888888886 466666543 567888888887544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.78  E-value=5.7e-18  Score=152.87  Aligned_cols=205  Identities=22%  Similarity=0.213  Sum_probs=164.6

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|+|++|+++.+.+..+.  .+++|++|++++|.+..++...+..+++|++|++++|.+..+.+     .....
T Consensus        97 ~l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~  169 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIRQIEVGAFN--GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS-----YAFNR  169 (452)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT-----TTTTT
T ss_pred             CCCCCCEEECCCCccCCcChhhcc--CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCH-----hHHhc
Confidence            378999999999999999777788  89999999999999999998888999999999999998876643     12356


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      +++|+.|.++++..+..++...   +..+++|+.|+++++ .+..++ .+..+++|+.|+++++. +....+. .+..++
T Consensus       170 l~~L~~L~l~~~~~l~~i~~~~---~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~  242 (452)
T 3zyi_A          170 VPSLMRLDLGELKKLEYISEGA---FEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNH-FPEIRPG-SFHGLS  242 (452)
T ss_dssp             CTTCCEEECCCCTTCCEECTTT---TTTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSC-CSEECGG-GGTTCT
T ss_pred             CCcccEEeCCCCCCccccChhh---ccCCCCCCEEECCCC-cccccc-cccccccccEEECcCCc-CcccCcc-cccCcc
Confidence            9999999999988888776543   567899999999987 455554 46678999999999864 5555433 578899


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP  232 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~  232 (296)
                      +|++|++++|.. ..+...      .+..+++|+.|+++++ +++.++... +..+++|+.|++.+++
T Consensus       243 ~L~~L~L~~n~l-~~~~~~------~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          243 SLKKLWVMNSQV-SLIERN------AFDGLASLVELNLAHN-NLSSLPHDL-FTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TCCEEECTTSCC-CEECTT------TTTTCTTCCEEECCSS-CCSCCCTTS-STTCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCcC-ceECHH------HhcCCCCCCEEECCCC-cCCccChHH-hccccCCCEEEccCCC
Confidence            999999999764 333221      2344899999999997 577776544 5678999999999876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.78  E-value=5.5e-18  Score=146.82  Aligned_cols=221  Identities=18%  Similarity=0.187  Sum_probs=117.7

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .++|++|+++++++..+.+..+.  .+++|++|++++|.+..+++..+.++++|++|++++|.+..+..        ...
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------~~~  122 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFK--GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--------NLP  122 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS--------SCC
T ss_pred             CCCCeEEECCCCcCCccCHhHhh--CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc--------ccc
Confidence            34566666666666655444455  56666666666666665555555666666666666665543321        112


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCcccc--ccccCccccCCccEEEeccCcCccccCCcccccCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLI--NLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSL  163 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l  163 (296)
                      ++|++|.++++. +..++...   +..+++|+.|+++++....  ..+..+..+ +|++|+++++. ++.++.    ...
T Consensus       123 ~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~----~~~  192 (332)
T 2ft3_A          123 SSLVELRIHDNR-IRKVPKGV---FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK----DLP  192 (332)
T ss_dssp             TTCCEEECCSSC-CCCCCSGG---GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS----SSC
T ss_pred             ccCCEEECCCCc-cCccCHhH---hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCc----ccc
Confidence            556666665543 22222111   3445666666666543211  122222223 55555555432 333221    112


Q ss_pred             CCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCccc
Q 022501          164 VCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLS  243 (296)
Q Consensus       164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~  243 (296)
                      ++|++|++++|... .+..      ..+..+++|+.|+++++. ++.++... +..+++|+.|++++| .++.+|..+..
T Consensus       193 ~~L~~L~l~~n~i~-~~~~------~~l~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~lp~~l~~  262 (332)
T 2ft3_A          193 ETLNELHLDHNKIQ-AIEL------EDLLRYSKLYRLGLGHNQ-IRMIENGS-LSFLPTLRELHLDNN-KLSRVPAGLPD  262 (332)
T ss_dssp             SSCSCCBCCSSCCC-CCCT------TSSTTCTTCSCCBCCSSC-CCCCCTTG-GGGCTTCCEEECCSS-CCCBCCTTGGG
T ss_pred             CCCCEEECCCCcCC-ccCH------HHhcCCCCCCEEECCCCc-CCcCChhH-hhCCCCCCEEECCCC-cCeecChhhhc
Confidence            45666666655322 1111      123346777777777753 55554332 456777888888776 46677777777


Q ss_pred             CCCcceEEcccCC
Q 022501          244 TPRLREVRKNWGL  256 (296)
Q Consensus       244 ~~~L~~l~l~~~~  256 (296)
                      +++|+.++++.+.
T Consensus       263 l~~L~~L~l~~N~  275 (332)
T 2ft3_A          263 LKLLQVVYLHTNN  275 (332)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CccCCEEECCCCC
Confidence            7778888776543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.78  E-value=2.1e-17  Score=140.09  Aligned_cols=222  Identities=13%  Similarity=0.067  Sum_probs=165.2

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK   89 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~   89 (296)
                      .+++.++++++.++   ..  ..++|++|++++|.+..++...+..+++|++|++++|.+.++.+     .....+++|+
T Consensus        14 ~~~~c~~~~l~~ip---~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~   83 (285)
T 1ozn_A           14 VTTSCPQQGLQAVP---VG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-----AAFTGLALLE   83 (285)
T ss_dssp             CEEECCSSCCSSCC---TT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCC
T ss_pred             eEEEcCcCCcccCC---cC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-----hhcCCccCCC
Confidence            46777777777763   22  45799999999999998887788999999999999998776633     1234589999


Q ss_pred             eeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEE
Q 022501           90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKL  169 (296)
Q Consensus        90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  169 (296)
                      +|+++++..+..+....   +..+++|++|+++++......+..+..+++|++|+++++. +...+.. .+..+++|++|
T Consensus        84 ~L~l~~n~~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L  158 (285)
T 1ozn_A           84 QLDLSDNAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDD-TFRDLGNLTHL  158 (285)
T ss_dssp             EEECCSCTTCCCCCTTT---TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEE
T ss_pred             EEeCCCCCCccccCHHH---hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHh-HhccCCCccEE
Confidence            99999887566653322   6678999999999975444334556778999999999864 5554432 46788999999


Q ss_pred             EEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-cccCCCcc
Q 022501          170 RIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-VLSTPRLR  248 (296)
Q Consensus       170 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~  248 (296)
                      ++++|. ++.++..      .+..+++|++|+++++. ++.+.... +..+++|+.|+++++ .++.++.. +..+++|+
T Consensus       159 ~l~~n~-l~~~~~~------~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~  228 (285)
T 1ozn_A          159 FLHGNR-ISSVPER------AFRGLHSLDRLLLHQNR-VAHVHPHA-FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQ  228 (285)
T ss_dssp             ECCSSC-CCEECTT------TTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCC
T ss_pred             ECCCCc-ccccCHH------HhcCccccCEEECCCCc-ccccCHhH-ccCcccccEeeCCCC-cCCcCCHHHcccCcccC
Confidence            999974 4444332      13348999999999975 66664433 567899999999997 46666643 56789999


Q ss_pred             eEEcccCC
Q 022501          249 EVRKNWGL  256 (296)
Q Consensus       249 ~l~l~~~~  256 (296)
                      .++++.+.
T Consensus       229 ~L~l~~N~  236 (285)
T 1ozn_A          229 YLRLNDNP  236 (285)
T ss_dssp             EEECCSSC
T ss_pred             EEeccCCC
Confidence            99998543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.77  E-value=1.1e-17  Score=156.16  Aligned_cols=232  Identities=17%  Similarity=0.146  Sum_probs=144.1

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   83 (296)
                      .+++|++|+++++.+.++.+..+.  .+++|+.|++++|... .++...+..+++|++|++++|.+......   .....
T Consensus       299 ~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~  373 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFENLCQISAS--NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC---NLQLR  373 (606)
T ss_dssp             SCTTCCEEECTTCCCSBGGGGCGG--GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES---TTTTT
T ss_pred             ccccCCEEECccCCcCcCchhhhh--ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc---chhcc
Confidence            368999999999999888666677  8999999999988776 67776788899999999999987766421   11234


Q ss_pred             CccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccC
Q 022501           84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKS  162 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  162 (296)
                      .+++|++|.++++......+..    +..+++|+.|+++++......+. .+..+++|+.|++++|. +....+. .+..
T Consensus       374 ~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~  447 (606)
T 3t6q_A          374 NLSHLQSLNLSYNEPLSLKTEA----FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQ-LFDG  447 (606)
T ss_dssp             TCTTCCEEECCSCSCEEECTTT----TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-CBTTCTT-TTTT
T ss_pred             cCCCCCEEECCCCcCCcCCHHH----hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-cCCcCHH-HHhC
Confidence            5888888888876432222222    55667788888877644333332 25567777777777654 3332222 3456


Q ss_pred             CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501          163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL  242 (296)
Q Consensus       163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  242 (296)
                      +++|++|++++|...+..+...    ..+..+++|++|+++++. ++.+.+.. +..+++|+.|++++|......|..+.
T Consensus       448 l~~L~~L~L~~n~l~~~~~~~~----~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~  521 (606)
T 3t6q_A          448 LPALQHLNLQGNHFPKGNIQKT----NSLQTLGRLEILVLSFCD-LSSIDQHA-FTSLKMMNHVDLSHNRLTSSSIEALS  521 (606)
T ss_dssp             CTTCCEEECTTCBCGGGEECSS----CGGGGCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred             CCCCCEEECCCCCCCccccccc----hhhccCCCccEEECCCCc-cCccChhh-hccccCCCEEECCCCccCcCChhHhC
Confidence            7777777777765433111110    113336667777776653 44443322 34566666666666543333344444


Q ss_pred             cCCCcceEEccc
Q 022501          243 STPRLREVRKNW  254 (296)
Q Consensus       243 ~~~~L~~l~l~~  254 (296)
                      .+++| .++++.
T Consensus       522 ~l~~L-~L~L~~  532 (606)
T 3t6q_A          522 HLKGI-YLNLAS  532 (606)
T ss_dssp             TCCSC-EEECCS
T ss_pred             ccccc-EEECcC
Confidence            44555 555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.77  E-value=1.5e-17  Score=149.95  Aligned_cols=64  Identities=22%  Similarity=0.021  Sum_probs=41.9

Q ss_pred             cCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCCcc
Q 022501          193 VFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDK  258 (296)
Q Consensus       193 ~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~~  258 (296)
                      .+++|++|+++++. ++.+.... +..+++|++|++++|..-...|..+..+++|++|+++.+...
T Consensus       321 ~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          321 GLTHLLKLNLSQNF-LGSIDSRM-FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             TCTTCCEEECCSSC-CCEECGGG-GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcccCCEEECCCCc-cCCcChhH-hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence            36777777777753 45554322 456788888888887533333666667888888888765443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.76  E-value=1e-17  Score=141.90  Aligned_cols=207  Identities=17%  Similarity=0.116  Sum_probs=157.0

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccc-cceEeecCccccccCC
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSS-YKEIFSNGEVEKQAGM   84 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~   84 (296)
                      .++|++|++++++++.+.+..+.  .+++|++|++++|.+..+++..+..+++|++|++++|. +..+.+     .....
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~-----~~~~~  103 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-----ATFHG  103 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT-----TTTTT
T ss_pred             CCCceEEEeeCCcCCccCHHHcc--cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH-----HHhcC
Confidence            56899999999999998767777  89999999999999888877788899999999999995 554422     22345


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSL  163 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l  163 (296)
                      +++|++|.++++... .++..   .+..+++|++|+++++. +..++. .+..+++|+.|+++++ .++.++.. .+..+
T Consensus       104 l~~L~~L~l~~n~l~-~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l  176 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQ-ELGPG---LFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGN-RISSVPER-AFRGL  176 (285)
T ss_dssp             CTTCCEEECTTSCCC-CCCTT---TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTC
T ss_pred             CcCCCEEECCCCcCC-EECHh---HhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCC-cccccCHH-HhcCc
Confidence            899999999987543 33221   16678999999999874 455554 4677899999999986 46655432 46778


Q ss_pred             CCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccc
Q 022501          164 VCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMM  235 (296)
Q Consensus       164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~  235 (296)
                      ++|++|++++|......+..       +..+++|+.|+++++. ++.++... +..+++|+.|++++++...
T Consensus       177 ~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          177 HSLDRLLLHQNRVAHVHPHA-------FRDLGRLMTLYLFANN-LSALPTEA-LAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTT-------TTTCTTCCEEECCSSC-CSCCCHHH-HTTCTTCCEEECCSSCEEC
T ss_pred             cccCEEECCCCcccccCHhH-------ccCcccccEeeCCCCc-CCcCCHHH-cccCcccCEEeccCCCccC
Confidence            99999999998643322332       3348999999999974 66655422 4678999999999986443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.76  E-value=2e-17  Score=154.43  Aligned_cols=205  Identities=15%  Similarity=0.006  Sum_probs=133.9

Q ss_pred             cCCCccEEEeccCCCCccC--hHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCc
Q 022501           31 LFQNLKSLEIVSDKSDNFS--IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYK  108 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  108 (296)
                      .+++|+.|++++|.+...+  +..+..+++|++|++++|.+..+.      .....+++|+.|.++++......+..   
T Consensus       348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~---  418 (606)
T 3vq2_A          348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS------ANFMGLEELQHLDFQHSTLKRVTEFS---  418 (606)
T ss_dssp             CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC------CCCTTCTTCCEEECTTSEEESTTTTT---
T ss_pred             cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch------hhccCCCCCCeeECCCCccCCccChh---
Confidence            4556666666555554331  234556666666666666544432      22345778888888776543332211   


Q ss_pred             ccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccc
Q 022501          109 LDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVE  188 (296)
Q Consensus       109 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  188 (296)
                      .+..+++|+.|++++|......+..+..+++|++|++++|.......+ ..+..+++|++|++++|...+..+..     
T Consensus       419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~-----  492 (606)
T 3vq2_A          419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQLEQISWGV-----  492 (606)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTT-----
T ss_pred             hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH-HhhccCCCCCEEECCCCcCCccChhh-----
Confidence            155678888888888765555666677788889998887653322222 24577888999999888543322222     


Q ss_pred             cccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCC-CcceEEcccC
Q 022501          189 EDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTP-RLREVRKNWG  255 (296)
Q Consensus       189 ~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~L~~l~l~~~  255 (296)
                        +..+++|++|+++++. ++.+.+.. +..+++|++|++++|. ++.+|..+..++ +|+.++++.+
T Consensus       493 --~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          493 --FDTLHRLQLLNMSHNN-LLFLDSSH-YNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             --TTTCTTCCEEECCSSC-CSCEEGGG-TTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSC
T ss_pred             --hcccccCCEEECCCCc-CCCcCHHH-ccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCC
Confidence              3348899999999874 56654332 4678999999999974 778888877776 5999999743

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.76  E-value=3.1e-17  Score=142.76  Aligned_cols=56  Identities=18%  Similarity=0.217  Sum_probs=28.8

Q ss_pred             CCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccC
Q 022501          194 FSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWG  255 (296)
Q Consensus       194 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~  255 (296)
                      +++|++|+++++. ++.++   .+..+++|++|++++| .++.++. +..+++|+.++++.+
T Consensus       242 l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          242 LSQLTWLEIGTNQ-ISDIN---AVKDLTKLKMLNVGSN-QISDISV-LNNLSQLNSLFLNNN  297 (347)
T ss_dssp             CTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECCSS
T ss_pred             CCCCCEEECCCCc-cCCCh---hHhcCCCcCEEEccCC-ccCCChh-hcCCCCCCEEECcCC
Confidence            4555555555542 33331   1345566666666665 3444432 335566666666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.76  E-value=2.2e-17  Score=146.17  Aligned_cols=134  Identities=12%  Similarity=0.041  Sum_probs=103.5

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++++.|+++++.+..++...+.  .+++|+.|++++|.+..++...+..+++|++|++++|.+..+.+     .....
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~  115 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQN  115 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTT
T ss_pred             ccCCceEEEecCCchhhCChhHhc--ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-----HHhcC
Confidence            368999999999999988655566  89999999999999998887788999999999999997766533     12355


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCc
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQ  149 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~  149 (296)
                      +++|++|.++++. +..++...   +..+++|++|+++++......+..+..+++|++|+++++.
T Consensus       116 l~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          116 VPLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCc-cCcCCHHH---hcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence            8999999999874 44554431   3568899999999875433333446678888888888753

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=7.9e-18  Score=155.36  Aligned_cols=110  Identities=20%  Similarity=0.240  Sum_probs=62.4

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|++++|+++++.+..+.  .+++|++|++++|.+..+++..++++++|++|++++|.+..+..    ......+
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~~l  122 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFY--SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV----TSLFPNL  122 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS----SCSCTTC
T ss_pred             CCcccEEECCCCCcCccChhhcc--ccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch----hhhhhcc
Confidence            55666666666666666555555  66677777776666666666666667777777777665543211    1123446


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC  124 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~  124 (296)
                      ++|++|.++++..+..++...   +..+++|++|+++++
T Consensus       123 ~~L~~L~L~~n~~~~~~~~~~---~~~l~~L~~L~L~~n  158 (549)
T 2z81_A          123 TNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKAL  158 (549)
T ss_dssp             TTCCEEEEEESSSCCEECTTT---TTTCCEEEEEEEEET
T ss_pred             CCccEEECCCCccccccCHhh---hhcccccCeeeccCC
Confidence            666666666655444433211   334455555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.74  E-value=1.3e-17  Score=145.17  Aligned_cols=216  Identities=17%  Similarity=0.179  Sum_probs=132.7

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|+++++.++.++  .+.  .+++|++|++++|.+..++.  +..+++|++|++.+|......+  .    ...
T Consensus        86 ~l~~L~~L~L~~n~i~~~~--~~~--~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~----~~~  153 (347)
T 4fmz_A           86 NLVKLTNLYIGTNKITDIS--ALQ--NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--P----LSN  153 (347)
T ss_dssp             TCTTCCEEECCSSCCCCCG--GGT--TCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG--G----GTT
T ss_pred             cCCcCCEEEccCCcccCch--HHc--CCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc--c----hhh
Confidence            3678888888888777753  244  77888888888877776664  6677777777777773211111  0    223


Q ss_pred             ccccceeEeccccc---------------------ccccccccCcccccCCCccEEEeccCccccccccCccccCCccEE
Q 022501           85 LTQIKSLKLWELSN---------------------LLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTL  143 (296)
Q Consensus        85 ~~~L~~L~l~~~~~---------------------l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L  143 (296)
                      +++|++|.++++..                     +..++.     +..+++|+.+.+.++. +...+. +..+++|++|
T Consensus       154 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L  226 (347)
T 4fmz_A          154 MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSL  226 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-----GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEE
T ss_pred             CCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-----ccCCCccceeecccCC-CCCCch-hhcCCcCCEE
Confidence            44555555544321                     111111     3344555555555542 222222 4456777888


Q ss_pred             EeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCc
Q 022501          144 EVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSL  223 (296)
Q Consensus       144 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L  223 (296)
                      ++++|. +.+.+   .+..+++|++|++++|. +..+.        .+..+++|++|+++++ .+++++   .+..+++|
T Consensus       227 ~l~~n~-l~~~~---~~~~l~~L~~L~l~~n~-l~~~~--------~~~~l~~L~~L~l~~n-~l~~~~---~~~~l~~L  289 (347)
T 4fmz_A          227 KIGNNK-ITDLS---PLANLSQLTWLEIGTNQ-ISDIN--------AVKDLTKLKMLNVGSN-QISDIS---VLNNLSQL  289 (347)
T ss_dssp             ECCSSC-CCCCG---GGTTCTTCCEEECCSSC-CCCCG--------GGTTCTTCCEEECCSS-CCCCCG---GGGGCTTC
T ss_pred             EccCCc-cCCCc---chhcCCCCCEEECCCCc-cCCCh--------hHhcCCCcCEEEccCC-ccCCCh---hhcCCCCC
Confidence            877753 44433   25677888888888764 33331        2344889999999887 356653   25678899


Q ss_pred             cEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501          224 EDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       224 ~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      +.|++++|......+..+..+++|+.++++.+.
T Consensus       290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             CEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            999999986444445555678899999987554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.74  E-value=1.1e-16  Score=138.35  Aligned_cols=225  Identities=13%  Similarity=0.077  Sum_probs=165.9

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|+++++.++++.+..+.  .+++|++|++++|.+..+|...   .++|++|++++|.+..+.+     .....
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~-----~~~~~  143 (330)
T 1xku_A           74 NLKNLHTLILINNKISKISPGAFA--PLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRK-----SVFNG  143 (330)
T ss_dssp             TCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCSBCCSSC---CTTCCEEECCSSCCCBBCH-----HHHTT
T ss_pred             cCCCCCEEECCCCcCCeeCHHHhc--CCCCCCEEECCCCcCCccChhh---cccccEEECCCCcccccCH-----hHhcC
Confidence            478999999999999998777777  8999999999999998888643   3799999999997776533     12345


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      +++|+.|.++++..-. ... ....+..+++|+.|+++++ .++.++...  +++|++|+++++. +....+. .+..++
T Consensus       144 l~~L~~L~l~~n~l~~-~~~-~~~~~~~l~~L~~L~l~~n-~l~~l~~~~--~~~L~~L~l~~n~-l~~~~~~-~~~~l~  216 (330)
T 1xku_A          144 LNQMIVVELGTNPLKS-SGI-ENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNK-ITKVDAA-SLKGLN  216 (330)
T ss_dssp             CTTCCEEECCSSCCCG-GGB-CTTGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTSC-CCEECTG-GGTTCT
T ss_pred             CccccEEECCCCcCCc-cCc-ChhhccCCCCcCEEECCCC-ccccCCccc--cccCCEEECCCCc-CCccCHH-HhcCCC
Confidence            8999999999865421 101 1112667899999999986 466666655  4899999999864 5555332 467889


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc--
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL--  242 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--  242 (296)
                      +|++|++++|.. ..+...      .+..+++|++|+++++. ++.++..  +..+++|++|++++| .++.++....  
T Consensus       217 ~L~~L~Ls~n~l-~~~~~~------~~~~l~~L~~L~L~~N~-l~~lp~~--l~~l~~L~~L~l~~N-~i~~~~~~~f~~  285 (330)
T 1xku_A          217 NLAKLGLSFNSI-SAVDNG------SLANTPHLRELHLNNNK-LVKVPGG--LADHKYIQVVYLHNN-NISAIGSNDFCP  285 (330)
T ss_dssp             TCCEEECCSSCC-CEECTT------TGGGSTTCCEEECCSSC-CSSCCTT--TTTCSSCCEEECCSS-CCCCCCTTSSSC
T ss_pred             CCCEEECCCCcC-ceeChh------hccCCCCCCEEECCCCc-CccCChh--hccCCCcCEEECCCC-cCCccChhhcCC
Confidence            999999999864 333221      23448999999999974 6766553  467899999999997 4767665432  


Q ss_pred             -----cCCCcceEEcccCCc
Q 022501          243 -----STPRLREVRKNWGLD  257 (296)
Q Consensus       243 -----~~~~L~~l~l~~~~~  257 (296)
                           ..++++.+++.++..
T Consensus       286 ~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          286 PGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             SSCCTTSCCCSEEECCSSSS
T ss_pred             cccccccccccceEeecCcc
Confidence                 236788898875543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=1.7e-16  Score=131.01  Aligned_cols=198  Identities=13%  Similarity=0.072  Sum_probs=135.2

Q ss_pred             CCccEEEeccCCCCccChHHHhcCCcccEEEEeccc-cceEeecCccccccCCccccceeEecccccccccccccCcccc
Q 022501           33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSS-YKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDS  111 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  111 (296)
                      ++|+.|++++|.+..++...+..+++|++|++++|. +..+.+.     ....+++|++|.++++..+..++...   +.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-----~f~~l~~L~~L~l~~~n~l~~i~~~~---f~  102 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-----SFYNLSKVTHIEIRNTRNLTYIDPDA---LK  102 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-----TEESCTTCCEEEEEEETTCCEECTTS---EE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-----HcCCCcCCcEEECCCCCCeeEcCHHH---hC
Confidence            377888888877777776667778888888888775 5555321     11347788888887755666654322   45


Q ss_pred             cCCCccEEEeccCccccccccCccccCCcc---EEEeccCcCccccCCcccccCCCCcc-EEEEeCccccceeccccccc
Q 022501          112 VFQNLETLEIWWCNNLINLVPSSASFENLT---TLEVSYCQRLKNLVSSSTAKSLVCLM-KLRIDGCKLMTEIISSEGDV  187 (296)
Q Consensus       112 ~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~---~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~  187 (296)
                      .+++|+.|+++++. +..++. +..+++|+   .|+++++..++.++.. .+..+++|+ +|+++++. ++.++....  
T Consensus       103 ~l~~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~-l~~i~~~~~--  176 (239)
T 2xwt_C          103 ELPLLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNG-FTSVQGYAF--  176 (239)
T ss_dssp             CCTTCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCC-CCEECTTTT--
T ss_pred             CCCCCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCC-CcccCHhhc--
Confidence            67788888888753 455554 55566776   8888876566666543 356778888 88888764 334444222  


Q ss_pred             ccccccCCccceeeccCCcCcceecCCCccccC-CCccEEeeccCCccccccCCcccCCCcceEEcc
Q 022501          188 EEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKF-PSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKN  253 (296)
Q Consensus       188 ~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~  253 (296)
                          . .++|++|++++++.++.++... +..+ ++|+.|+++++ .++.+|..  .+++|+.|++.
T Consensus       177 ----~-~~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~  234 (239)
T 2xwt_C          177 ----N-GTKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIAR  234 (239)
T ss_dssp             ----T-TCEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECT
T ss_pred             ----C-CCCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCC-ccccCChh--HhccCceeecc
Confidence                2 3688889988876678776544 4566 88999999885 57777765  66788888875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=7e-17  Score=150.68  Aligned_cols=133  Identities=12%  Similarity=0.041  Sum_probs=105.2

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++++.|+++++.+..+++..+.  .+++|+.|++++|.+..+++..+..+++|++|++++|.+..+.+     ...+.+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l  122 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLD--SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNV  122 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHH--HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTC
T ss_pred             CCCceEEEeeCCCCCCcCHHHHc--cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-----HHHcCC
Confidence            67889999999999888665566  89999999999999998887788999999999999998776533     123568


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCc
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQ  149 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~  149 (296)
                      ++|++|.++++. +..++...   +..+++|+.|+++++......+..+..+++|++|+++++.
T Consensus       123 ~~L~~L~L~~n~-l~~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          123 PLLTVLVLERND-LSSLPRGI---FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             TTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCCCEEEeeCCC-CCCCCHHH---hccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC
Confidence            999999999874 44554431   4678999999999975444444457778999999998764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.73  E-value=1.7e-16  Score=148.15  Aligned_cols=225  Identities=17%  Similarity=0.138  Sum_probs=138.4

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|+++++.+..++  .++  .+++|+.|++.+|....+|. +  .+++|++|++.+|......+       ...
T Consensus       283 ~l~~L~~L~l~~~~~~~l~--~l~--~~~~L~~L~l~~n~l~~lp~-~--~l~~L~~L~l~~n~~~~~~~-------~~~  348 (606)
T 3vq2_A          283 CLANVSAMSLAGVSIKYLE--DVP--KHFKWQSLSIIRCQLKQFPT-L--DLPFLKSLTLTMNKGSISFK-------KVA  348 (606)
T ss_dssp             GGTTCSEEEEESCCCCCCC--CCC--TTCCCSEEEEESCCCSSCCC-C--CCSSCCEEEEESCSSCEECC-------CCC
T ss_pred             cCCCCCEEEecCccchhhh--hcc--ccccCCEEEcccccCccccc-C--CCCccceeeccCCcCccchh-------hcc
Confidence            3678888888888777763  455  78888888888888877772 2  77888888888773222211       123


Q ss_pred             ccccceeEeccccc-------------------------ccccccccCcccccCCCccEEEeccCccccccc-cCccccC
Q 022501           85 LTQIKSLKLWELSN-------------------------LLHIWEQCYKLDSVFQNLETLEIWWCNNLINLV-PSSASFE  138 (296)
Q Consensus        85 ~~~L~~L~l~~~~~-------------------------l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~  138 (296)
                      +++|++|+++++..                         +..++..    +..+++|+.|+++++......+ ..+..++
T Consensus       349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  424 (606)
T 3vq2_A          349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN----FMGLEELQHLDFQHSTLKRVTEFSAFLSLE  424 (606)
T ss_dssp             CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCC----CTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred             CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhh----ccCCCCCCeeECCCCccCCccChhhhhccc
Confidence            44555555544321                         2222211    4455666666666654333333 2445566


Q ss_pred             CccEEEeccCcCccccCCcccccCCCCccEEEEeCccccce-ecccccccccccccCCccceeeccCCcCcceecCCCcc
Q 022501          139 NLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTE-IISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCT  217 (296)
Q Consensus       139 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~  217 (296)
                      +|++|++++|.. ....+ ..+..+++|++|++++|..... ++.       .+..+++|++|+++++. ++.+.... +
T Consensus       425 ~L~~L~l~~n~l-~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~~l~~L~~L~Ls~n~-l~~~~~~~-~  493 (606)
T 3vq2_A          425 KLLYLDISYTNT-KIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSN-------VFANTTNLTFLDLSKCQ-LEQISWGV-F  493 (606)
T ss_dssp             TCCEEECTTSCC-EECCT-TTTTTCTTCCEEECTTCEEGGGEECS-------CCTTCTTCCEEECTTSC-CCEECTTT-T
T ss_pred             cCCEEECcCCCC-Cccch-hhhcCCCCCCEEECCCCcCCCcchHH-------hhccCCCCCEEECCCCc-CCccChhh-h
Confidence            677777766542 22222 1345667777777777654332 222       23347888888888874 66665433 4


Q ss_pred             ccCCCccEEeeccCCccccccCCcccCCCcceEEcccCCcc
Q 022501          218 FKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDK  258 (296)
Q Consensus       218 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~~  258 (296)
                      ..+++|++|++++|......|..+..+++|+.|+++.+...
T Consensus       494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  534 (606)
T 3vq2_A          494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE  534 (606)
T ss_dssp             TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred             cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence            67889999999988544445777778889999999766543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.72  E-value=2e-16  Score=135.30  Aligned_cols=222  Identities=16%  Similarity=0.144  Sum_probs=164.1

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK   89 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~   89 (296)
                      +.++.++++++.++ .  .  ..++|++|++++|.+..+|...++++++|++|++++|.+......   ......+++|+
T Consensus        10 ~~l~c~~~~l~~ip-~--~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~   81 (306)
T 2z66_A           10 TEIRCNSKGLTSVP-T--G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC---SQSDFGTTSLK   81 (306)
T ss_dssp             TEEECCSSCCSSCC-S--C--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE---EHHHHSCSCCC
T ss_pred             CEEEcCCCCcccCC-C--C--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc---ccccccccccC
Confidence            46777777777764 2  2  457999999999999999988889999999999999987654211   11223489999


Q ss_pred             eeEecccccccccccccCcccccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCCcccccCCCCcc
Q 022501           90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLM  167 (296)
Q Consensus        90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  167 (296)
                      +|+++++. +..++..    +..+++|++|+++++. +..++.  .+..+++|++|+++++. +....+. .+..+++|+
T Consensus        82 ~L~Ls~n~-i~~l~~~----~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~  153 (306)
T 2z66_A           82 YLDLSFNG-VITMSSN----FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG-IFNGLSSLE  153 (306)
T ss_dssp             EEECCSCS-EEEEEEE----EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECSTT-TTTTCTTCC
T ss_pred             EEECCCCc-cccChhh----cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccchh-hcccCcCCC
Confidence            99999875 3445444    6678999999999864 444443  56778999999999875 4433322 467789999


Q ss_pred             EEEEeCccccc-eecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccC-CcccCC
Q 022501          168 KLRIDGCKLMT-EIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF-GVLSTP  245 (296)
Q Consensus       168 ~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~  245 (296)
                      +|++++|.... .++..       +..+++|++|+++++. ++.+.... +..+++|++|++++|. ++.++. .+..++
T Consensus       154 ~L~l~~n~l~~~~~~~~-------~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  223 (306)
T 2z66_A          154 VLKMAGNSFQENFLPDI-------FTELRNLTFLDLSQCQ-LEQLSPTA-FNSLSSLQVLNMSHNN-FFSLDTFPYKCLN  223 (306)
T ss_dssp             EEECTTCEEGGGEECSC-------CTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECTTSC-CSBCCSGGGTTCT
T ss_pred             EEECCCCccccccchhH-------HhhCcCCCEEECCCCC-cCCcCHHH-hcCCCCCCEEECCCCc-cCccChhhccCcc
Confidence            99999986543 23332       3348999999999974 67765443 5678999999999975 555544 456789


Q ss_pred             CcceEEcccCCc
Q 022501          246 RLREVRKNWGLD  257 (296)
Q Consensus       246 ~L~~l~l~~~~~  257 (296)
                      +|+.|+++.+..
T Consensus       224 ~L~~L~L~~N~l  235 (306)
T 2z66_A          224 SLQVLDYSLNHI  235 (306)
T ss_dssp             TCCEEECTTSCC
T ss_pred             cCCEeECCCCCC
Confidence            999999986543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.71  E-value=8.7e-17  Score=152.16  Aligned_cols=156  Identities=19%  Similarity=0.206  Sum_probs=103.4

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      +++++|+++++.++++.+..+.  .+++|++|++++|.+..+++..++++++|++|++++|.+..+.+     .....++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----~~~~~l~   97 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFT--RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD-----KTFAFCT   97 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGG--GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT-----TTTTTCT
T ss_pred             CCCcEEECCCCCCCCcCHHHHh--CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh-----hhhccCC
Confidence            5788999998888887666666  78899999998888887777788888999999998887665432     1234578


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCccc-ccCCCC
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSST-AKSLVC  165 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~l~~  165 (296)
                      +|++|.++++. +..++...   +..+++|++|+++++......+..+..+++|++|+++++. ++....... ...+++
T Consensus        98 ~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~  172 (680)
T 1ziw_A           98 NLTELHLMSNS-IQKIKNNP---FVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSS  172 (680)
T ss_dssp             TCSEEECCSSC-CCCCCSCT---TTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCE
T ss_pred             CCCEEECCCCc-cCccChhH---ccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcccccc
Confidence            88888888764 33333221   5567778888887764433334445567777777777653 333322111 123456


Q ss_pred             ccEEEEeCc
Q 022501          166 LMKLRIDGC  174 (296)
Q Consensus       166 L~~L~l~~~  174 (296)
                      |++|++++|
T Consensus       173 L~~L~L~~n  181 (680)
T 1ziw_A          173 LKKLELSSN  181 (680)
T ss_dssp             ESEEECTTC
T ss_pred             ccEEECCCC
Confidence            666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=5.6e-16  Score=140.30  Aligned_cols=60  Identities=20%  Similarity=0.332  Sum_probs=31.8

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccce
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKE   71 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   71 (296)
                      +++|++|+++++.++++.+  +.  .+++|++|++++|.+..+++  +.++++|++|++.+|.+..
T Consensus        67 l~~L~~L~Ls~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~  126 (466)
T 1o6v_A           67 LNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD  126 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             hcCCCEEECCCCccCCchh--hh--ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC
Confidence            5666666666666665532  33  45555555555555544443  4445555555555544433

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.70  E-value=1.1e-15  Score=129.83  Aligned_cols=194  Identities=18%  Similarity=0.214  Sum_probs=111.5

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++++++++++++++.++ ..    ..++++.|++++|.+..++...+..+++|++|++++|.+..+...       ..+
T Consensus         9 l~~l~~l~~~~~~l~~ip-~~----~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~l   76 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALP-PD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------GTL   76 (290)
T ss_dssp             STTCCEEECTTSCCSSCC-SC----CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-------SCC
T ss_pred             cCCccEEECCCCCCCcCC-CC----CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-------CCC
Confidence            677888888888777764 21    346788888888888877766778888888888888877665432       236


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      ++|+.|.++++. +..++..    +..+++|+.|+++++ .++.+++ .+..+++|++|+++++ .+..++.. .+..  
T Consensus        77 ~~L~~L~Ls~N~-l~~l~~~----~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~--  146 (290)
T 1p9a_G           77 PVLGTLDLSHNQ-LQSLPLL----GQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPG-LLTP--  146 (290)
T ss_dssp             TTCCEEECCSSC-CSSCCCC----TTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTT-TTTT--
T ss_pred             CcCCEEECCCCc-CCcCchh----hccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccChh-hccc--
Confidence            667777666542 3333332    344555555555553 2333332 2344455555555543 23332211 1233  


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccC
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLST  244 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  244 (296)
                                                   +++|+.|+++++ +++.++.+. +..+++|+.|+++++ .++.+|.++...
T Consensus       147 -----------------------------l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~ip~~~~~~  194 (290)
T 1p9a_G          147 -----------------------------TPKLEKLSLANN-NLTELPAGL-LNGLENLDTLLLQEN-SLYTIPKGFFGS  194 (290)
T ss_dssp             -----------------------------CTTCCEEECTTS-CCSCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             -----------------------------ccCCCEEECCCC-cCCccCHHH-hcCcCCCCEEECCCC-cCCccChhhccc
Confidence                                         455555555543 244444322 334566666666664 455666666566


Q ss_pred             CCcceEEcc
Q 022501          245 PRLREVRKN  253 (296)
Q Consensus       245 ~~L~~l~l~  253 (296)
                      ++|+.+++.
T Consensus       195 ~~L~~l~L~  203 (290)
T 1p9a_G          195 HLLPFAFLH  203 (290)
T ss_dssp             CCCSEEECC
T ss_pred             ccCCeEEeC
Confidence            666666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.70  E-value=4.8e-16  Score=150.58  Aligned_cols=104  Identities=16%  Similarity=0.076  Sum_probs=48.0

Q ss_pred             CccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccc
Q 022501          139 NLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTF  218 (296)
Q Consensus       139 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~  218 (296)
                      +|+.|+++++. +....+ ..+..+++|+.|++++|......+.       .+..+++|++|+++++. ++.+.... +.
T Consensus       267 ~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~-------~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~  335 (844)
T 3j0a_A          267 SVRHLDLSHGF-VFSLNS-RVFETLKDLKVLNLAYNKINKIADE-------AFYGLDNLQVLNLSYNL-LGELYSSN-FY  335 (844)
T ss_dssp             CCCEEECTTCC-CCEECS-CCSSSCCCCCEEEEESCCCCEECTT-------TTTTCSSCCEEEEESCC-CSCCCSCS-CS
T ss_pred             CccEEECCCCc-ccccCh-hhhhcCCCCCEEECCCCcCCCCChH-------HhcCCCCCCEEECCCCC-CCccCHHH-hc
Confidence            45555554432 222221 1244556666666665532211111       12335666666666543 33332222 34


Q ss_pred             cCCCccEEeeccCCccccccC-CcccCCCcceEEccc
Q 022501          219 KFPSLEDLFVIDCPKMMIFSF-GVLSTPRLREVRKNW  254 (296)
Q Consensus       219 ~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~l~~  254 (296)
                      .+++|+.|+++++ .+..++. .+..+++|+.|+++.
T Consensus       336 ~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~  371 (844)
T 3j0a_A          336 GLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRD  371 (844)
T ss_dssp             SCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEET
T ss_pred             CCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCC
Confidence            5566666666665 3444333 233455666666644

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.70  E-value=2.9e-16  Score=135.96  Aligned_cols=221  Identities=12%  Similarity=0.091  Sum_probs=156.7

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|++++++++.+.+..+.  .+++|++|++++|.+..+|....   ++|++|++.+|.+..+.+     .....
T Consensus        76 ~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~-----~~~~~  145 (332)
T 2ft3_A           76 GLQHLYALVLVNNKISKIHEKAFS--PLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPK-----GVFSG  145 (332)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGST--TCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCS-----GGGSS
T ss_pred             CCCCCcEEECCCCccCccCHhHhh--CcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCH-----hHhCC
Confidence            478999999999999998777777  89999999999999888886432   899999999998765532     12355


Q ss_pred             ccccceeEeccccccc--ccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccC
Q 022501           85 LTQIKSLKLWELSNLL--HIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKS  162 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  162 (296)
                      +++|+.|.++++..-.  ..+..    +..+ +|+.|+++++ .+..++...  +++|++|+++++ .+....+. .+..
T Consensus       146 l~~L~~L~l~~n~l~~~~~~~~~----~~~l-~L~~L~l~~n-~l~~l~~~~--~~~L~~L~l~~n-~i~~~~~~-~l~~  215 (332)
T 2ft3_A          146 LRNMNCIEMGGNPLENSGFEPGA----FDGL-KLNYLRISEA-KLTGIPKDL--PETLNELHLDHN-KIQAIELE-DLLR  215 (332)
T ss_dssp             CSSCCEEECCSCCCBGGGSCTTS----SCSC-CCSCCBCCSS-BCSSCCSSS--CSSCSCCBCCSS-CCCCCCTT-SSTT
T ss_pred             CccCCEEECCCCccccCCCCccc----ccCC-ccCEEECcCC-CCCccCccc--cCCCCEEECCCC-cCCccCHH-HhcC
Confidence            8999999999865321  11111    3344 7889999886 455566554  478999999875 35544332 4567


Q ss_pred             CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501          163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL  242 (296)
Q Consensus       163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  242 (296)
                      +++|++|++++|.. ..+...      .+..+++|++|+++++. ++.++..  +..+++|++|+++++ .++.++....
T Consensus       216 l~~L~~L~L~~N~l-~~~~~~------~~~~l~~L~~L~L~~N~-l~~lp~~--l~~l~~L~~L~l~~N-~l~~~~~~~~  284 (332)
T 2ft3_A          216 YSKLYRLGLGHNQI-RMIENG------SLSFLPTLRELHLDNNK-LSRVPAG--LPDLKLLQVVYLHTN-NITKVGVNDF  284 (332)
T ss_dssp             CTTCSCCBCCSSCC-CCCCTT------GGGGCTTCCEEECCSSC-CCBCCTT--GGGCTTCCEEECCSS-CCCBCCTTSS
T ss_pred             CCCCCEEECCCCcC-CcCChh------HhhCCCCCCEEECCCCc-CeecChh--hhcCccCCEEECCCC-CCCccChhHc
Confidence            88899999988753 322221      23348899999998874 6666553  467889999999886 4666654321


Q ss_pred             -------cCCCcceEEcccCC
Q 022501          243 -------STPRLREVRKNWGL  256 (296)
Q Consensus       243 -------~~~~L~~l~l~~~~  256 (296)
                             ..++|+.+++..+.
T Consensus       285 ~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          285 CPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             SCSSCCSSSCCBSEEECCSSS
T ss_pred             cccccccccccccceEeecCc
Confidence                   13568888887554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.70  E-value=5.6e-16  Score=143.50  Aligned_cols=227  Identities=17%  Similarity=0.136  Sum_probs=133.7

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCc--------
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGE--------   77 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------   77 (296)
                      +++|++|+++++.++.++ ..+.  .+ +|++|++.+|....+|.   ..+++|++|++.+|.+....+...        
T Consensus       281 l~~L~~L~l~~~~l~~l~-~~~~--~~-~L~~L~l~~n~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~  353 (570)
T 2z63_A          281 LTNVSSFSLVSVTIERVK-DFSY--NF-GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD  353 (570)
T ss_dssp             GTTCSEEEEESCEECSCC-BCCS--CC-CCSEEEEESCBCSSCCB---CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEE
T ss_pred             cCcccEEEecCccchhhh-hhhc--cC-CccEEeeccCcccccCc---ccccccCEEeCcCCccccccccccCCCCCEEe
Confidence            678888888887777663 3344  45 77777777777666664   355666666666654333222100        


Q ss_pred             -----------cccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccc-cCccccCCccEEEe
Q 022501           78 -----------VEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLV-PSSASFENLTTLEV  145 (296)
Q Consensus        78 -----------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l  145 (296)
                                 .......+++|++|.++++.. ..++..    +..+++|++|+++++......+ ..+..+++|++|++
T Consensus       354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSN----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEE----EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             CcCCccCccccccccccccCccCEEECCCCcc-cccccc----ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence                       001112344555555554321 222221    4456667777776654333222 23456677777777


Q ss_pred             ccCcCccccCCcccccCCCCccEEEEeCcccc-ceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCcc
Q 022501          146 SYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLM-TEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLE  224 (296)
Q Consensus       146 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~  224 (296)
                      ++|.. ....+ ..+..+++|++|++++|... ..++..       +..+++|++|+++++. ++.+.+.. +..+++|+
T Consensus       429 ~~n~l-~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~-------~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~  497 (570)
T 2z63_A          429 SHTHT-RVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDI-------FTELRNLTFLDLSQCQ-LEQLSPTA-FNSLSSLQ  497 (570)
T ss_dssp             TTSCC-EECCT-TTTTTCTTCCEEECTTCEEGGGEECSC-------CTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCC
T ss_pred             cCCcc-cccch-hhhhcCCcCcEEECcCCcCccccchhh-------hhcccCCCEEECCCCc-cccCChhh-hhcccCCC
Confidence            77643 22222 23566778888888877643 233332       3348888889888874 56664433 46788899


Q ss_pred             EEeeccCCccccccC-CcccCCCcceEEcccCC
Q 022501          225 DLFVIDCPKMMIFSF-GVLSTPRLREVRKNWGL  256 (296)
Q Consensus       225 ~L~l~~c~~l~~~~~-~~~~~~~L~~l~l~~~~  256 (296)
                      +|++++|. ++.++. .+..+++|+.++++.+.
T Consensus       498 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          498 VLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence            99998874 555544 45678889999987544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.70  E-value=5.6e-16  Score=142.08  Aligned_cols=221  Identities=14%  Similarity=0.138  Sum_probs=162.4

Q ss_pred             ccceEEEeeccCccccccCCC-----CCCcCCCccEEEeccCCCCccChHHHhcC---CcccEEEEeccccceEeecCcc
Q 022501            7 ANLEELKLSGKDITMICHDHL-----PKHLFQNLKSLEIVSDKSDNFSIGFLQRF---HNVERLKLRNSSYKEIFSNGEV   78 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~   78 (296)
                      ++|++|+++++++.+..+..+     .  .+++|+.+++.++.. .+|...+..+   ++|++|++++|.+.....    
T Consensus       247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~--~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~----  319 (520)
T 2z7x_B          247 TTVWYFSISNVKLQGQLDFRDFDYSGT--SLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC----  319 (520)
T ss_dssp             SSCSEEEEEEEEEESCCCCCCCCCCSC--CCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC----
T ss_pred             CcccEEEeecccccCccccchhhcccc--cCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc----
Confidence            478888888887774334444     4  789999999988888 7775455444   679999999996644321    


Q ss_pred             ccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCcccc--ccccCccccCCccEEEeccCcCccc-cC
Q 022501           79 EKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLI--NLVPSSASFENLTTLEVSYCQRLKN-LV  155 (296)
Q Consensus        79 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~c~~l~~-~~  155 (296)
                         ...+++|++|.++++.....++..    +..+++|+.|+++++....  .++..+..+++|++|+++++. +.. ++
T Consensus       320 ---~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~  391 (520)
T 2z7x_B          320 ---PSKISPFLHLDFSNNLLTDTVFEN----CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEK  391 (520)
T ss_dssp             ---CSSCCCCCEEECCSSCCCTTTTTT----CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGG
T ss_pred             ---hhhCCcccEEEeECCccChhhhhh----hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccc
Confidence               145899999999987654434433    6788999999999875433  444556778999999999865 444 43


Q ss_pred             CcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccc
Q 022501          156 SSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMM  235 (296)
Q Consensus       156 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~  235 (296)
                      . ..+..+++|++|++++|.....++...         .++|+.|+++++ +++.++...  ..+++|++|++++| .++
T Consensus       392 ~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l---------~~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~  457 (520)
T 2z7x_B          392 K-GDCSWTKSLLSLNMSSNILTDTIFRCL---------PPRIKVLDLHSN-KIKSIPKQV--VKLEALQELNVASN-QLK  457 (520)
T ss_dssp             G-CSCCCCTTCCEEECCSSCCCGGGGGSC---------CTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCC
T ss_pred             c-chhccCccCCEEECcCCCCCcchhhhh---------cccCCEEECCCC-cccccchhh--hcCCCCCEEECCCC-cCC
Confidence            2 235678999999999987543333210         269999999997 477776533  58999999999997 577


Q ss_pred             cccCC-cccCCCcceEEcccCC
Q 022501          236 IFSFG-VLSTPRLREVRKNWGL  256 (296)
Q Consensus       236 ~~~~~-~~~~~~L~~l~l~~~~  256 (296)
                      .+|.. +..+++|++++++.+.
T Consensus       458 ~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          458 SVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCHHHhccCCcccEEECcCCC
Confidence            88886 6678999999998544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=1e-15  Score=128.92  Aligned_cols=203  Identities=16%  Similarity=0.093  Sum_probs=121.2

Q ss_pred             CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccccc
Q 022501           33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSV  112 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  112 (296)
                      ++|++|++++|.+..++...+.++++|++|++++|.+..+.+     .....+++|++|.++++.. ..++...   +..
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l-~~~~~~~---~~~   98 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-----GAYQSLSHLSTLILTGNPI-QSLALGA---FSG   98 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-----TTTTTCTTCCEEECTTCCC-CEECTTT---TTT
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-----HHccCCcCCCEEECCCCcc-CccChhh---hcC
Confidence            457777777777666665556667777777777776655432     1123466777777766532 2222111   455


Q ss_pred             CCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccc
Q 022501          113 FQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEI  192 (296)
Q Consensus       113 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  192 (296)
                      +++|++|++.++......+..+..+++|++|+++++. +........+..+++|++|++++|.. +.+...      .+.
T Consensus        99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~~~------~~~  170 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCT------DLR  170 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC-CEECGG------GGH
T ss_pred             CccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCC-CcCCHH------Hhh
Confidence            6777777777754332222245667788888887653 43322113456778888888887653 333211      122


Q ss_pred             cCCccc----eeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc-ccCCCcceEEcccCC
Q 022501          193 VFSRLK----WLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV-LSTPRLREVRKNWGL  256 (296)
Q Consensus       193 ~~~~L~----~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~l~~~~  256 (296)
                      .+++|+    .|++++.. ++.++...  ....+|+.|+++++. ++.+|... ..+++|+.++++.+.
T Consensus       171 ~l~~L~~l~l~L~ls~n~-l~~~~~~~--~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          171 VLHQMPLLNLSLDLSLNP-MNFIQPGA--FKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             HHHTCTTCCEEEECCSSC-CCEECTTS--SCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             hhhhccccceeeecCCCc-ccccCccc--cCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence            244555    67777754 66665543  334578899998874 66776653 567888988887443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=1e-15  Score=138.25  Aligned_cols=140  Identities=18%  Similarity=0.141  Sum_probs=88.9

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|+++++.+++++  .+.  .+++|++|++++|.+..++   +..+++|++|++++|.+.++ +       .+.+
T Consensus        41 l~~L~~L~Ls~n~l~~~~--~l~--~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~-------~~~l  105 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT--GIE--KLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D-------VTPL  105 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT--TGG--GCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C-------CTTC
T ss_pred             cCCCCEEEccCCCcccCh--hhc--ccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e-------cCCC
Confidence            678888888888887762  345  7888888888888777765   56788888888888876654 1       2447


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      ++|++|.++++. +..++      +..+++|+.|+++++. +..++  +..+++|++|++++|..+...    .+..+++
T Consensus       106 ~~L~~L~L~~N~-l~~l~------~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~----~~~~l~~  171 (457)
T 3bz5_A          106 TKLTYLNCDTNK-LTKLD------VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL----DVTPQTQ  171 (457)
T ss_dssp             TTCCEEECCSSC-CSCCC------CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC----CCTTCTT
T ss_pred             CcCCEEECCCCc-CCeec------CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc----ccccCCc
Confidence            777777777653 33331      4456666666666643 33332  344566666666665444433    1344555


Q ss_pred             ccEEEEeCc
Q 022501          166 LMKLRIDGC  174 (296)
Q Consensus       166 L~~L~l~~~  174 (296)
                      |++|++++|
T Consensus       172 L~~L~ls~n  180 (457)
T 3bz5_A          172 LTTLDCSFN  180 (457)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            666665554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=1.5e-16  Score=143.61  Aligned_cols=75  Identities=17%  Similarity=0.192  Sum_probs=50.8

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|+++++++++++   +.  .+++|++|++++|.+..++   ++++++|++|++++|.+.++ +       ...+
T Consensus        63 l~~L~~L~Ls~n~l~~~~---~~--~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l-~-------~~~l  126 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTLD---LS--QNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL-D-------VSQN  126 (457)
T ss_dssp             CTTCSEEECCSSCCSCCC---CT--TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCC-C-------CTTC
T ss_pred             cCCCCEEEccCCcCCeEc---cc--cCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCee-c-------CCCC
Confidence            678888888888777763   44  6788888888777777665   56777888888887766553 1       1335


Q ss_pred             cccceeEeccc
Q 022501           86 TQIKSLKLWEL   96 (296)
Q Consensus        86 ~~L~~L~l~~~   96 (296)
                      ++|++|.++++
T Consensus       127 ~~L~~L~l~~N  137 (457)
T 3bz5_A          127 PLLTYLNCARN  137 (457)
T ss_dssp             TTCCEEECTTS
T ss_pred             CcCCEEECCCC
Confidence            55555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.69  E-value=2.3e-16  Score=135.72  Aligned_cols=215  Identities=14%  Similarity=0.066  Sum_probs=158.8

Q ss_pred             ceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcccc
Q 022501            9 LEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQI   88 (296)
Q Consensus         9 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L   88 (296)
                      ++..+++.+++.......+.  .+++|+.|++++|.+..+++..+..+++|++|++++|.+.+..++       ..+++|
T Consensus        12 l~i~~ls~~~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~l~~L   82 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQ--SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-------ESLSTL   82 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHT--TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEE-------TTCTTC
T ss_pred             eeEeeccccchhhhHHHHhc--cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhh-------hhcCCC
Confidence            33444444445444333334  678999999999999999888899999999999999988877653       449999


Q ss_pred             ceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccE
Q 022501           89 KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMK  168 (296)
Q Consensus        89 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  168 (296)
                      ++|+++++. +..+        ...++|+.|+++++. +..++...  +++|+.|+++++. +....+. .+..+++|++
T Consensus        83 ~~L~Ls~n~-l~~l--------~~~~~L~~L~l~~n~-l~~~~~~~--~~~L~~L~l~~N~-l~~~~~~-~~~~l~~L~~  148 (317)
T 3o53_A           83 RTLDLNNNY-VQEL--------LVGPSIETLHAANNN-ISRVSCSR--GQGKKNIYLANNK-ITMLRDL-DEGCRSRVQY  148 (317)
T ss_dssp             CEEECCSSE-EEEE--------EECTTCCEEECCSSC-CSEEEECC--CSSCEEEECCSSC-CCSGGGB-CTGGGSSEEE
T ss_pred             CEEECcCCc-cccc--------cCCCCcCEEECCCCc-cCCcCccc--cCCCCEEECCCCC-CCCccch-hhhccCCCCE
Confidence            999999864 3332        335789999999864 55554433  7899999999864 5554332 4567899999


Q ss_pred             EEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcc
Q 022501          169 LRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLR  248 (296)
Q Consensus       169 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~  248 (296)
                      |++++|......+...      ...+++|++|+++++. ++.++...   .+++|++|++++| .++.+|..+..+++|+
T Consensus       149 L~Ls~N~l~~~~~~~~------~~~l~~L~~L~L~~N~-l~~~~~~~---~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~  217 (317)
T 3o53_A          149 LDLKLNEIDTVNFAEL------AASSDTLEHLNLQYNF-IYDVKGQV---VFAKLKTLDLSSN-KLAFMGPEFQSAAGVT  217 (317)
T ss_dssp             EECTTSCCCEEEGGGG------GGGTTTCCEEECTTSC-CCEEECCC---CCTTCCEEECCSS-CCCEECGGGGGGTTCS
T ss_pred             EECCCCCCCcccHHHH------hhccCcCCEEECCCCc-Cccccccc---ccccCCEEECCCC-cCCcchhhhcccCccc
Confidence            9999986433222221      1237999999999975 77775433   5899999999997 5778887788899999


Q ss_pred             eEEcccCCc
Q 022501          249 EVRKNWGLD  257 (296)
Q Consensus       249 ~l~l~~~~~  257 (296)
                      .++++.+..
T Consensus       218 ~L~L~~N~l  226 (317)
T 3o53_A          218 WISLRNNKL  226 (317)
T ss_dssp             EEECTTSCC
T ss_pred             EEECcCCcc
Confidence            999986553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.5e-16  Score=138.95  Aligned_cols=227  Identities=19%  Similarity=0.079  Sum_probs=164.9

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      ++.....+.++++++.++ ..    ..++|++|++++|.+..++...+.++++|++|++++|.+.++.+     .....+
T Consensus        30 C~~~~~c~~~~~~l~~iP-~~----~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l   99 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIP-SG----LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-----DSFSSL   99 (353)
T ss_dssp             ECTTSEEECCSTTCSSCC-TT----CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTC
T ss_pred             CCCCeEeeCCCCCccccc-cc----ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH-----hhcCCC
Confidence            566666777778888774 22    45799999999999998888788999999999999998877643     123458


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCCcccccCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVSSSTAKSL  163 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l  163 (296)
                      ++|++|+++++. +..++...   +..+++|++|+++++ .+..++.  .+..+++|++|+++++..+...... .+..+
T Consensus       100 ~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l  173 (353)
T 2z80_A          100 GSLEHLDLSYNY-LSNLSSSW---FKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGL  173 (353)
T ss_dssp             TTCCEEECCSSC-CSSCCHHH---HTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTC
T ss_pred             CCCCEEECCCCc-CCcCCHhH---hCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHH-HccCC
Confidence            999999999864 34443321   456889999999986 5556665  5677999999999998767666443 46788


Q ss_pred             CCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccc------
Q 022501          164 VCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIF------  237 (296)
Q Consensus       164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~------  237 (296)
                      ++|++|++++|......+..       +..+++|++|+++++. ++.++... ...+++|+.|+++++. ++.+      
T Consensus       174 ~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~~L~l~~n~-l~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~l~  243 (353)
T 2z80_A          174 TFLEELEIDASDLQSYEPKS-------LKSIQNVSHLILHMKQ-HILLLEIF-VDVTSSVECLELRDTD-LDTFHFSELS  243 (353)
T ss_dssp             CEEEEEEEEETTCCEECTTT-------TTTCSEEEEEEEECSC-STTHHHHH-HHHTTTEEEEEEESCB-CTTCCCC---
T ss_pred             CCCCEEECCCCCcCccCHHH-------HhccccCCeecCCCCc-cccchhhh-hhhcccccEEECCCCc-cccccccccc
Confidence            99999999998643332332       3348999999999865 45444321 2357889999998874 4332      


Q ss_pred             --------------------------cCCcccCCCcceEEcccCCcc
Q 022501          238 --------------------------SFGVLSTPRLREVRKNWGLDK  258 (296)
Q Consensus       238 --------------------------~~~~~~~~~L~~l~l~~~~~~  258 (296)
                                                |..+..+++|++|+++.+...
T Consensus       244 ~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~  290 (353)
T 2z80_A          244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK  290 (353)
T ss_dssp             ---CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred             cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence                                      222346778999999765543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=8.8e-18  Score=145.54  Aligned_cols=205  Identities=14%  Similarity=0.146  Sum_probs=117.9

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCcc-ChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNF-SIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      ++++.|+++++.+.+..+. ..  .+++|++|++++|.+... .+..+..+++|++|++++|.+....+     .....+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~--~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-----~~l~~~  141 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HF--SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-----NTLAKN  141 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CC--CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-----HHHTTC
T ss_pred             ccceEEEcCCccccccchh-hc--cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH-----HHHhcC
Confidence            5677777777766665432 23  567777777777765422 23456677777777777775432111     112347


Q ss_pred             cccceeEecccccccc--cccccCcccccCCCccEEEeccCccccc--cccCccccC-CccEEEeccCc-CccccCCccc
Q 022501           86 TQIKSLKLWELSNLLH--IWEQCYKLDSVFQNLETLEIWWCNNLIN--LVPSSASFE-NLTTLEVSYCQ-RLKNLVSSST  159 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~-~L~~L~l~~c~-~l~~~~~~~~  159 (296)
                      ++|++|++++|..+..  ++..    +..+++|++|++++|..+.+  ++..+..++ +|++|++++|. .+++......
T Consensus       142 ~~L~~L~L~~~~~l~~~~l~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~  217 (336)
T 2ast_B          142 SNLVRLNLSGCSGFSEFALQTL----LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL  217 (336)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHH----HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH
T ss_pred             CCCCEEECCCCCCCCHHHHHHH----HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH
Confidence            7777777777755442  2222    44567777777777744443  344455566 77777777764 3432111123


Q ss_pred             ccCCCCccEEEEeCccccc-eecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccC
Q 022501          160 AKSLVCLMKLRIDGCKLMT-EIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDC  231 (296)
Q Consensus       160 ~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c  231 (296)
                      +..+++|++|++++|..++ ..+..       +..+++|++|++++|..+...... .+..+++|+.|++++|
T Consensus       218 ~~~~~~L~~L~l~~~~~l~~~~~~~-------l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          218 VRRCPNLVHLDLSDSVMLKNDCFQE-------FFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HHHCTTCSEEECTTCTTCCGGGGGG-------GGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred             HhhCCCCCEEeCCCCCcCCHHHHHH-------HhCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc
Confidence            4566777777777776433 22221       223677777777777643332211 1345777777777776

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.68  E-value=1.6e-16  Score=149.25  Aligned_cols=136  Identities=14%  Similarity=0.069  Sum_probs=68.6

Q ss_pred             cccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC-ccEEEEeCccccceecccccccc
Q 022501          110 DSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC-LMKLRIDGCKLMTEIISSEGDVE  188 (296)
Q Consensus       110 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~  188 (296)
                      +..+++|+.|+++++...+.+| .+..+++|+.|+++++. +..++.  .+..+++ |++|++++|.. ..++....   
T Consensus       326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~--~l~~l~~~L~~L~Ls~N~l-~~lp~~~~---  397 (636)
T 4eco_A          326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPA--NFCGFTEQVENLSFAHNKL-KYIPNIFD---  397 (636)
T ss_dssp             HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCT--TSEEECTTCCEEECCSSCC-SSCCSCCC---
T ss_pred             hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccH--hhhhhcccCcEEEccCCcC-cccchhhh---
Confidence            3445555555555543333444 44445555555555442 333221  2344555 66666665542 23332111   


Q ss_pred             cccccCCccceeeccCCcCcceecCCCccc-------cCCCccEEeeccCCccccccCCcc-cCCCcceEEcccCCcc
Q 022501          189 EDEIVFSRLKWLSLECLDSLTSFCSGNCTF-------KFPSLEDLFVIDCPKMMIFSFGVL-STPRLREVRKNWGLDK  258 (296)
Q Consensus       189 ~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~-------~~~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~l~l~~~~~~  258 (296)
                        ...+++|++|+++++. +....+.. +.       .+++|++|++++| .++.+|.... .+++|++|+++.+...
T Consensus       398 --~~~l~~L~~L~Ls~N~-l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          398 --AKSVSVMSAIDFSYNE-IGSVDGKN-FDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             --TTCSSCEEEEECCSSC-TTTTTTCS-SCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             --hcccCccCEEECcCCc-CCCcchhh-hcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC
Confidence              1113366666666653 22211111 11       4557888888776 4556666543 3678888888765544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.68  E-value=2.6e-16  Score=147.85  Aligned_cols=238  Identities=11%  Similarity=0.020  Sum_probs=143.4

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCC-CC--ccChHHHhcC------CcccEEEEeccccceEeec
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDK-SD--NFSIGFLQRF------HNVERLKLRNSSYKEIFSN   75 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~--~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~   75 (296)
                      .+++|++|++++|.+.+..|..+.  .+++|+.|++++|. ..  .+|. .+..+      ++|++|++.+|.+..+...
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~  323 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLK--ALPEMQLINVACNRGISGEQLKD-DWQALADAPVGEKIQIIYIGYNNLKTFPVE  323 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTT--TCSSCCEEECTTCTTSCHHHHHH-HHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred             ccCCCCEEEecCCcCCccChHHHh--cCCCCCEEECcCCCCCccccchH-HHHhhhccccCCCCCEEECCCCcCCccCch
Confidence            578999999999887766667777  89999999999887 55  3554 34444      8999999998877643220


Q ss_pred             CccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCC-ccEEEeccCcCcccc
Q 022501           76 GEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFEN-LTTLEVSYCQRLKNL  154 (296)
Q Consensus        76 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~c~~l~~~  154 (296)
                      .    ....+++|+.|.++++.....++ .    +..+++|+.|+++++ .+..+|..+..+++ |++|+++++. ++.+
T Consensus       324 ~----~l~~l~~L~~L~L~~N~l~g~ip-~----~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~l  392 (636)
T 4eco_A          324 T----SLQKMKKLGMLECLYNQLEGKLP-A----FGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYI  392 (636)
T ss_dssp             H----HHTTCTTCCEEECCSCCCEEECC-C----CEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSC
T ss_pred             h----hhccCCCCCEEeCcCCcCccchh-h----hCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-Cccc
Confidence            0    23457788888887664332444 2    555666777777665 34456655666666 7777666543 3333


Q ss_pred             CCcccccCCCCccEEEEeCccccceeccccc-------c-----------------cccccccCCccceeeccCCcCcce
Q 022501          155 VSSSTAKSLVCLMKLRIDGCKLMTEIISSEG-------D-----------------VEEDEIVFSRLKWLSLECLDSLTS  210 (296)
Q Consensus       155 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------~-----------------~~~~~~~~~~L~~L~l~~~~~L~~  210 (296)
                      +.......+++|++|++++|.....++....       .                 ....+..+++|++|+++++. ++.
T Consensus       393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~  471 (636)
T 4eco_A          393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTE  471 (636)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC-CSB
T ss_pred             chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC-CCC
Confidence            3211111223566666655543221111000       0                 00012236777777777754 455


Q ss_pred             ecCCCcc------ccCCCccEEeeccCCccccccCCcc--cCCCcceEEcccCCcc
Q 022501          211 FCSGNCT------FKFPSLEDLFVIDCPKMMIFSFGVL--STPRLREVRKNWGLDK  258 (296)
Q Consensus       211 l~~~~~~------~~~~~L~~L~l~~c~~l~~~~~~~~--~~~~L~~l~l~~~~~~  258 (296)
                      ++.....      ..+++|+.|++++| .++.+|..+.  .+++|+.|+++.+...
T Consensus       472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~  526 (636)
T 4eco_A          472 IPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFS  526 (636)
T ss_dssp             CCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred             cCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCC
Confidence            5543311      11228888999887 4667887775  7888999998765543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.67  E-value=6.3e-16  Score=141.75  Aligned_cols=105  Identities=16%  Similarity=0.127  Sum_probs=70.1

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .++|++|+++++.++++.+..+.  .+++|++|++++|.+..+++..++++++|++|++++|.+..+...        .+
T Consensus        20 ~~~L~~L~Ls~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--------~l   89 (520)
T 2z7x_B           20 SQKTTILNISQNYISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--------PT   89 (520)
T ss_dssp             CTTCSEEECCSSCCCCCCHHHHT--TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--------CC
T ss_pred             cccccEEECCCCcccccChhhcc--ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--------cc
Confidence            36788888888888777555566  788888888888888777666778888888888888877765432        36


Q ss_pred             cccceeEeccccccc-ccccccCcccccCCCccEEEeccC
Q 022501           86 TQIKSLKLWELSNLL-HIWEQCYKLDSVFQNLETLEIWWC  124 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~~L~~L~l~~~  124 (296)
                      ++|++|.++++.... .++..    +..+++|++|+++++
T Consensus        90 ~~L~~L~L~~N~l~~~~~p~~----~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           90 VNLKHLDLSFNAFDALPICKE----FGNMSQLKFLGLSTT  125 (520)
T ss_dssp             CCCSEEECCSSCCSSCCCCGG----GGGCTTCCEEEEEES
T ss_pred             CCccEEeccCCccccccchhh----hccCCcceEEEecCc
Confidence            667777776654221 11222    444555555555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.67  E-value=2e-15  Score=139.78  Aligned_cols=209  Identities=15%  Similarity=0.059  Sum_probs=149.4

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccC--hHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFS--IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   83 (296)
                      +++|++|+++++.+....+.    ..+++|+.|++++|.+....  +..+..+++|++|++++|.+..+.+.      ..
T Consensus       324 l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------~~  393 (570)
T 2z63_A          324 LKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN------FL  393 (570)
T ss_dssp             CSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE------EE
T ss_pred             ccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc------cc
Confidence            56666666666554443211    27888999999888777553  34677889999999999877766441      34


Q ss_pred             CccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCcc-ccCCcccccC
Q 022501           84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLK-NLVSSSTAKS  162 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~  162 (296)
                      .+++|+.|.++++......+..   .+..+++|+.|++++|......+..+..+++|+.|++++|.... ..+  ..+..
T Consensus       394 ~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~  468 (570)
T 2z63_A          394 GLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTE  468 (570)
T ss_dssp             TCTTCCEEECTTSEEESCTTSC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC--SCCTT
T ss_pred             ccCCCCEEEccCCccccccchh---hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch--hhhhc
Confidence            5999999999987543322211   15678999999999986666666677889999999999886332 233  34688


Q ss_pred             CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc
Q 022501          163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS  238 (296)
Q Consensus       163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~  238 (296)
                      +++|++|++++|......+..       +..+++|++|+++++ +++.++... +..+++|+.|++++++.....|
T Consensus       469 l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          469 LRNLTFLDLSQCQLEQLSPTA-------FNSLSSLQVLNMASN-QLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CTTCCEEECTTSCCCEECTTT-------TTTCTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCCCEEECCCCccccCChhh-------hhcccCCCEEeCCCC-cCCCCCHHH-hhcccCCcEEEecCCcccCCCc
Confidence            999999999998643332332       334899999999997 477776543 5688999999999987544433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.67  E-value=1.7e-15  Score=137.22  Aligned_cols=210  Identities=20%  Similarity=0.210  Sum_probs=115.6

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|+++++.++.+.  .+.  .+++|++|++++|.+...++  ++.+++|++|++.+|.+..+.       ....+
T Consensus       176 l~~L~~L~l~~n~l~~~~--~l~--~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-------~l~~l  242 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDIS--VLA--KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-------TLASL  242 (466)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGG--GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------GGGGC
T ss_pred             CCCCCEEECcCCcCCCCh--hhc--cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-------hhhcC
Confidence            344555555554444432  122  45555555555554443332  344555555555555443321       12235


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      ++|+.|.++++.. ..++.     +..+++|+.|+++++. +..++. +..+++|+.|++++|. +.+..   .+..+++
T Consensus       243 ~~L~~L~l~~n~l-~~~~~-----~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~---~~~~l~~  310 (466)
T 1o6v_A          243 TNLTDLDLANNQI-SNLAP-----LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQ-LEDIS---PISNLKN  310 (466)
T ss_dssp             TTCSEEECCSSCC-CCCGG-----GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CSCCG---GGGGCTT
T ss_pred             CCCCEEECCCCcc-ccchh-----hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCc-ccCch---hhcCCCC
Confidence            6666666665432 22111     4456667777776653 333333 4556777777777653 44432   2456777


Q ss_pred             ccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCC
Q 022501          166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTP  245 (296)
Q Consensus       166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~  245 (296)
                      |++|++++|.. ..+..        ...+++|++|+++++. ++.++   .+..+++|+.|++++|......|  ...++
T Consensus       311 L~~L~L~~n~l-~~~~~--------~~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~  375 (466)
T 1o6v_A          311 LTYLTLYFNNI-SDISP--------VSSLTKLQRLFFYNNK-VSDVS---SLANLTNINWLSAGHNQISDLTP--LANLT  375 (466)
T ss_dssp             CSEEECCSSCC-SCCGG--------GGGCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred             CCEEECcCCcC-CCchh--------hccCccCCEeECCCCc-cCCch---hhccCCCCCEEeCCCCccCccch--hhcCC
Confidence            77777777643 22221        2237788888888763 55552   24577888888888875433333  45778


Q ss_pred             CcceEEcccC
Q 022501          246 RLREVRKNWG  255 (296)
Q Consensus       246 ~L~~l~l~~~  255 (296)
                      +|+.++++.+
T Consensus       376 ~L~~L~l~~n  385 (466)
T 1o6v_A          376 RITQLGLNDQ  385 (466)
T ss_dssp             TCCEEECCCE
T ss_pred             CCCEEeccCC
Confidence            8888888643

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=3.5e-16  Score=150.66  Aligned_cols=80  Identities=15%  Similarity=0.181  Sum_probs=37.9

Q ss_pred             ccceEEEeeccCccccccC--CCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            7 ANLEELKLSGKDITMICHD--HLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      ++|++|++++|.++.++ .  .+.  .+++|+.|++++|.+..+|  .+..+++|++|++++|.+..+      +.....
T Consensus       548 ~~L~~L~Ls~N~L~~ip-~~~~l~--~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~l------p~~l~~  616 (876)
T 4ecn_A          548 PKIQIFYMGYNNLEEFP-ASASLQ--KMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEI------PEDFCA  616 (876)
T ss_dssp             TTCCEEECCSSCCCBCC-CHHHHT--TCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCC------CTTSCE
T ss_pred             CCccEEEeeCCcCCccC-Chhhhh--cCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccc------hHHHhh
Confidence            35555555555544332 2  233  4555555555555544444  344455555555555544321      112233


Q ss_pred             ccc-cceeEecccc
Q 022501           85 LTQ-IKSLKLWELS   97 (296)
Q Consensus        85 ~~~-L~~L~l~~~~   97 (296)
                      +++ |+.|.++++.
T Consensus       617 l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          617 FTDQVEGLGFSHNK  630 (876)
T ss_dssp             ECTTCCEEECCSSC
T ss_pred             ccccCCEEECcCCC
Confidence            555 6666665543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.67  E-value=4.2e-16  Score=131.21  Aligned_cols=152  Identities=23%  Similarity=0.288  Sum_probs=68.9

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|+++++.++.+.  .+.  .+++|+.|++++|.+..++  .+..+++|++|++++|.+.++.+     .....+
T Consensus        40 l~~L~~L~l~~~~i~~~~--~l~--~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~-----~~~~~l  108 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQ--GIQ--YLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPN-----GVFDKL  108 (272)
T ss_dssp             HTTCCEEECTTSCCCCCT--TGG--GCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCT-----TTTTTC
T ss_pred             ccceeeeeeCCCCccccc--ccc--cCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccCh-----hHhcCC
Confidence            455555555555554432  123  4555555555555544433  34455555555555554443321     011235


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      ++|++|.++++. +..++...   +..+++|+.|+++++ .+..++.. +..+++|+.|++++|. ++..+.. .+..++
T Consensus       109 ~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~  181 (272)
T 3rfs_A          109 TNLKELVLVENQ-LQSLPDGV---FDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEG-VFDKLT  181 (272)
T ss_dssp             TTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCT
T ss_pred             cCCCEEECCCCc-CCccCHHH---hccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCHH-HhcCCc
Confidence            555555555443 22221111   234455555555554 23333332 2345555555555442 3333221 234455


Q ss_pred             CccEEEEeCcc
Q 022501          165 CLMKLRIDGCK  175 (296)
Q Consensus       165 ~L~~L~l~~~~  175 (296)
                      +|++|++++|.
T Consensus       182 ~L~~L~L~~N~  192 (272)
T 3rfs_A          182 QLKDLRLYQNQ  192 (272)
T ss_dssp             TCCEEECCSSC
T ss_pred             cCCEEECCCCc
Confidence            55555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.67  E-value=2.9e-15  Score=130.65  Aligned_cols=222  Identities=13%  Similarity=0.054  Sum_probs=160.0

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEE-EeccccceEeecCccccccC
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLK-LRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~~   83 (296)
                      .+++++|+|++|+++.+++..+.  .+++|++|+|++|.+. .++.+.|.++++|+++. +.++.+..+.+.     ...
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~-----~f~  101 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-----AFQ  101 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSST--TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT-----SBC
T ss_pred             CCCCCEEEccCCcCCCcCHHHHc--CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch-----hhh
Confidence            45789999999999988766777  8899999999888875 57777778888877644 445666665331     124


Q ss_pred             CccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-cccc-CCccEEEeccCcCccccCCccccc
Q 022501           84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASF-ENLTTLEVSYCQRLKNLVSSSTAK  161 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l-~~L~~L~l~~c~~l~~~~~~~~~~  161 (296)
                      .+++|++|.++++. +..++...   ......+..+.+.++..+..++.. +..+ ..++.|+++++ .++.++..  +.
T Consensus       102 ~l~~L~~L~l~~n~-l~~~~~~~---~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~--~f  174 (350)
T 4ay9_X          102 NLPNLQYLLISNTG-IKHLPDVH---KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNS--AF  174 (350)
T ss_dssp             CCTTCCEEEEEEEC-CSSCCCCT---TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTT--SS
T ss_pred             hccccccccccccc-cccCCchh---hcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChh--hc
Confidence            58899999998754 33433221   233456778888777777777653 2333 46888888864 56666533  33


Q ss_pred             CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc
Q 022501          162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV  241 (296)
Q Consensus       162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~  241 (296)
                      ..++|+++.+.+++.++.++.+.      +..+++|++|++++. +++.++..    .+.+|+.|.+.+++.++.+|. .
T Consensus       175 ~~~~L~~l~l~~~n~l~~i~~~~------f~~l~~L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~-l  242 (350)
T 4ay9_X          175 NGTQLDELNLSDNNNLEELPNDV------FHGASGPVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLPT-L  242 (350)
T ss_dssp             TTEEEEEEECTTCTTCCCCCTTT------TTTEECCSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCCC-T
T ss_pred             cccchhHHhhccCCcccCCCHHH------hccCcccchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCCC-c
Confidence            45689999998888888776542      334899999999987 48888763    378899999999999999985 4


Q ss_pred             ccCCCcceEEcc
Q 022501          242 LSTPRLREVRKN  253 (296)
Q Consensus       242 ~~~~~L~~l~l~  253 (296)
                      ..+++|+.+++.
T Consensus       243 ~~l~~L~~l~l~  254 (350)
T 4ay9_X          243 EKLVALMEASLT  254 (350)
T ss_dssp             TTCCSCCEEECS
T ss_pred             hhCcChhhCcCC
Confidence            488999999884

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.67  E-value=2.8e-15  Score=145.16  Aligned_cols=134  Identities=17%  Similarity=0.162  Sum_probs=96.5

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccC-CCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSD-KSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .++|++|+|++|.++.+.+..+.  .+++|++|++++| ....+++..+.++++|++|++++|.+..+.+     .....
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~--~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p-----~~~~~   95 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFP--FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP-----DAFQG   95 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCS--SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT-----TSSCS
T ss_pred             CCCcCEEECCCCcCCccChhHCc--ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH-----hHccC
Confidence            57899999999999988777777  8999999999888 4557767778899999999999998877633     12345


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccc-cCccccCCccEEEeccC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLV-PSSASFENLTTLEVSYC  148 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~c  148 (296)
                      +++|++|.++++.....++..  ..+..+++|+.|+++++......+ ..+..+++|++|+++++
T Consensus        96 l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           96 LFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             CcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            888888888876433222211  114567788888888764333222 24566778888888765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.66  E-value=6e-16  Score=127.68  Aligned_cols=200  Identities=16%  Similarity=0.113  Sum_probs=153.3

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCC-CCccChHHHhcCCcccEEEEec-cccceEeecCccccccCC
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDK-SDNFSIGFLQRFHNVERLKLRN-SSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~   84 (296)
                      ++|++|++++++++.+++..+.  .+++|++|++++|. +..++...+.++++|++|++.+ +.++.+.+.     ....
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-----~f~~  103 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-----ALKE  103 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-----SEEC
T ss_pred             CcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-----HhCC
Confidence            4799999999999999776777  89999999999997 8888887889999999999998 877766421     1245


Q ss_pred             ccccceeEecccccccccccccCcccccCCCcc---EEEeccCccccccccC-ccccCCcc-EEEeccCcCccccCCccc
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLE---TLEIWWCNNLINLVPS-SASFENLT-TLEVSYCQRLKNLVSSST  159 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~~-~~~l~~L~-~L~l~~c~~l~~~~~~~~  159 (296)
                      +++|++|.++++. +..++.     +..+++|+   .|+++++..+..++.. +..+++|+ .|+++++ .++.++.. .
T Consensus       104 l~~L~~L~l~~n~-l~~lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~-~  175 (239)
T 2xwt_C          104 LPLLKFLGIFNTG-LKMFPD-----LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGY-A  175 (239)
T ss_dssp             CTTCCEEEEEEEC-CCSCCC-----CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTT-T
T ss_pred             CCCCCEEeCCCCC-Cccccc-----cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHh-h
Confidence            8999999999864 444443     44566666   9999998677777764 67789999 9999875 45555543 2


Q ss_pred             ccCCCCccEEEEeCccccceecccccccccccccC-CccceeeccCCcCcceecCCCccccCCCccEEeeccCCc
Q 022501          160 AKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVF-SRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPK  233 (296)
Q Consensus       160 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~  233 (296)
                      +.. ++|++|++++|..++.++...      +..+ ++|++|++++. .++.++..    .+++|+.|++.++..
T Consensus       176 ~~~-~~L~~L~L~~n~~l~~i~~~~------~~~l~~~L~~L~l~~N-~l~~l~~~----~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          176 FNG-TKLDAVYLNKNKYLTVIDKDA------FGGVYSGPSLLDVSQT-SVTALPSK----GLEHLKELIARNTWT  238 (239)
T ss_dssp             TTT-CEEEEEECTTCTTCCEECTTT------TTTCSBCCSEEECTTC-CCCCCCCT----TCTTCSEEECTTC--
T ss_pred             cCC-CCCCEEEcCCCCCcccCCHHH------hhccccCCcEEECCCC-ccccCChh----HhccCceeeccCccC
Confidence            333 799999999986666664422      3337 89999999985 47777653    589999999998864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.66  E-value=2.5e-15  Score=126.27  Aligned_cols=196  Identities=19%  Similarity=0.163  Sum_probs=95.0

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ   87 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   87 (296)
                      +.+++++++++++.++ ..    ..++|+.|++++|.+..++...+.++++|++|++++|.+..+.+     .....+++
T Consensus        17 ~~~~l~~~~~~l~~ip-~~----~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~-----~~~~~l~~   86 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIP-SN----IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA-----GIFKELKN   86 (270)
T ss_dssp             TTTEEECTTSCCSSCC-SC----CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT-----TTTSSCTT
T ss_pred             CCCEEEccCCCCCccC-CC----CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh-----hhhcCCCC
Confidence            3556666666655542 11    22456666666666666555555666666666666664443311     00122445


Q ss_pred             cceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCCCc
Q 022501           88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCL  166 (296)
Q Consensus        88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  166 (296)
                      |++|.++++.                             +..++. .+..+++|++|+++++ .+...+.. .+..+++|
T Consensus        87 L~~L~l~~n~-----------------------------l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L  135 (270)
T 2o6q_A           87 LETLWVTDNK-----------------------------LQALPIGVFDQLVNLAELRLDRN-QLKSLPPR-VFDSLTKL  135 (270)
T ss_dssp             CCEEECCSSC-----------------------------CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTT-TTTTCTTC
T ss_pred             CCEEECCCCc-----------------------------CCcCCHhHcccccCCCEEECCCC-ccCeeCHH-HhCcCcCC
Confidence            5555554432                             222222 2233445555555443 23322221 23445555


Q ss_pred             cEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-cccCC
Q 022501          167 MKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-VLSTP  245 (296)
Q Consensus       167 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~  245 (296)
                      ++|++++|. +..++..      .+..+++|++|+++++. ++.++... +..+++|++|+++++ .++.+|.. +..++
T Consensus       136 ~~L~Ls~n~-l~~~~~~------~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~  205 (270)
T 2o6q_A          136 TYLSLGYNE-LQSLPKG------VFDKLTSLKELRLYNNQ-LKRVPEGA-FDKLTELKTLKLDNN-QLKRVPEGAFDSLE  205 (270)
T ss_dssp             CEEECCSSC-CCCCCTT------TTTTCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred             CEEECCCCc-CCccCHh------HccCCcccceeEecCCc-CcEeChhH-hccCCCcCEEECCCC-cCCcCCHHHhcccc
Confidence            555555543 2222211      12225566666665542 44444322 345666777777765 45555543 34566


Q ss_pred             CcceEEccc
Q 022501          246 RLREVRKNW  254 (296)
Q Consensus       246 ~L~~l~l~~  254 (296)
                      +|+.++++.
T Consensus       206 ~L~~L~l~~  214 (270)
T 2o6q_A          206 KLKMLQLQE  214 (270)
T ss_dssp             TCCEEECCS
T ss_pred             CCCEEEecC
Confidence            777777763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.66  E-value=9.5e-16  Score=131.38  Aligned_cols=195  Identities=18%  Similarity=0.250  Sum_probs=147.3

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|++++++++.+.  .+.  .+++|+.|++++|.+..++.  +..+++|++|++++|.+..+..       ...+
T Consensus        40 l~~L~~L~l~~~~i~~l~--~~~--~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------~~~l  106 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE--GVQ--YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA-------IAGL  106 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG-------GTTC
T ss_pred             cCCcCEEEeeCCCccCch--hhh--ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchh-------hcCC
Confidence            789999999998888763  345  79999999999998888775  7889999999999997766522       3458


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      ++|+.|.++++. +..++.     +..+++|+.|+++++ .+..++. +..+++|+.|++++| .+.++.   .+..+++
T Consensus       107 ~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~---~l~~l~~  174 (308)
T 1h6u_A          107 QSIKTLDLTSTQ-ITDVTP-----LAGLSNLQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA-QVSDLT---PLANLSK  174 (308)
T ss_dssp             TTCCEEECTTSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCG---GGTTCTT
T ss_pred             CCCCEEECCCCC-CCCchh-----hcCCCCCCEEECCCC-ccCcCcc-ccCCCCccEEEccCC-cCCCCh---hhcCCCC
Confidence            999999999875 344432     667889999999986 4555544 667889999999886 455553   2678899


Q ss_pred             ccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccC
Q 022501          166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF  239 (296)
Q Consensus       166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~  239 (296)
                      |++|++++|. +..+..        +..+++|++|+++++. ++.++.   +..+++|+.|++++++ ++..|.
T Consensus       175 L~~L~l~~n~-l~~~~~--------l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~l~~N~-i~~~~~  234 (308)
T 1h6u_A          175 LTTLKADDNK-ISDISP--------LASLPNLIEVHLKNNQ-ISDVSP---LANTSNLFIVTLTNQT-ITNQPV  234 (308)
T ss_dssp             CCEEECCSSC-CCCCGG--------GGGCTTCCEEECTTSC-CCBCGG---GTTCTTCCEEEEEEEE-EECCCE
T ss_pred             CCEEECCCCc-cCcChh--------hcCCCCCCEEEccCCc-cCcccc---ccCCCCCCEEEccCCe-eecCCe
Confidence            9999999875 333332        3348899999999874 566553   4678999999999875 555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.66  E-value=3.8e-15  Score=140.88  Aligned_cols=64  Identities=13%  Similarity=0.221  Sum_probs=34.2

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCC--CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceE
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQ--NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEI   72 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   72 (296)
                      ++|++|+++++.+.++.+..+.  .++  +|+.|++++|.+..+++..+..+++|++|++.+|.+.+.
T Consensus       222 ~~L~~L~L~~n~l~~~~~~~~~--~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  287 (680)
T 1ziw_A          222 TSIRNLSLSNSQLSTTSNTTFL--GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL  287 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTG--GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred             ccccEEEccCCcccccChhHhh--ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence            5566666666555555444444  332  366666655555554444455555666666655554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.66  E-value=2.8e-16  Score=143.03  Aligned_cols=212  Identities=15%  Similarity=0.077  Sum_probs=161.1

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|+|++|.+.+..+  +.  .+++|+.|++++|.+..++.     .++|++|++++|.+..+.+        ..
T Consensus        56 ~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~--------~~  118 (487)
T 3oja_A           56 PFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSC--------SR  118 (487)
T ss_dssp             TCTTCCEEECTTSCCEEEEE--CT--TCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEE--------CC
T ss_pred             CCCCCCEEEeeCCCCCCCcc--cc--cCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCc--------cc
Confidence            47899999999999988754  55  89999999999998887763     4899999999998888755        34


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCcc-ccCCccEEEeccCcCccccCCcccccCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSA-SFENLTTLEVSYCQRLKNLVSSSTAKSL  163 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~l  163 (296)
                      +++|+.|.++++..-...+..    +..+++|+.|+++++......+..+. .+++|+.|+++++. ++..+   ....+
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~---~~~~l  190 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLD----EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVK---GQVVF  190 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBC----GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE---CCCCC
T ss_pred             cCCCCEEECCCCCCCCCCchh----hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-ccccc---ccccC
Confidence            789999999987543322323    56789999999999754444454443 68999999999865 55553   23468


Q ss_pred             CCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcc-ccccCCcc
Q 022501          164 VCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKM-MIFSFGVL  242 (296)
Q Consensus       164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l-~~~~~~~~  242 (296)
                      ++|++|++++|. +..++....       .+++|+.|+++++. ++.++..  +..+++|+.|++++++.. ..+|....
T Consensus       191 ~~L~~L~Ls~N~-l~~~~~~~~-------~l~~L~~L~Ls~N~-l~~lp~~--l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          191 AKLKTLDLSSNK-LAFMGPEFQ-------SAAGVTWISLRNNK-LVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             TTCCEEECCSSC-CCEECGGGG-------GGTTCSEEECTTSC-CCEECTT--CCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             CCCCEEECCCCC-CCCCCHhHc-------CCCCccEEEecCCc-Ccccchh--hccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            999999999975 444544333       38999999999964 7777663  467899999999998754 34555555


Q ss_pred             cCCCcceEEc
Q 022501          243 STPRLREVRK  252 (296)
Q Consensus       243 ~~~~L~~l~l  252 (296)
                      .++.|+.+++
T Consensus       260 ~l~~L~~l~~  269 (487)
T 3oja_A          260 KNQRVQTVAK  269 (487)
T ss_dssp             TCHHHHHHHH
T ss_pred             hCCCCcEEec
Confidence            6677776666

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.66  E-value=2.3e-15  Score=139.35  Aligned_cols=106  Identities=13%  Similarity=0.137  Sum_probs=73.2

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .++|++|++++|.+.++.+..+.  .+++|++|++++|.+..+++..+.++++|++|++++|.+..+...        .+
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--------~l  120 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDIS--FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--------PM  120 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTT--TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--------CC
T ss_pred             CCCcCEEECCCCCccccChhhhc--cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--------cc
Confidence            46788888888888887666666  788888888888888877666778888888888888877765331        46


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC  124 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~  124 (296)
                      ++|++|+++++. +..++.  ...+..+++|+.|+++++
T Consensus       121 ~~L~~L~Ls~N~-l~~l~~--p~~~~~l~~L~~L~L~~n  156 (562)
T 3a79_B          121 ASLRHLDLSFND-FDVLPV--CKEFGNLTKLTFLGLSAA  156 (562)
T ss_dssp             TTCSEEECCSSC-CSBCCC--CGGGGGCTTCCEEEEECS
T ss_pred             ccCCEEECCCCC-ccccCc--hHhhcccCcccEEecCCC
Confidence            777777777654 222221  011455666666666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=5.2e-15  Score=129.03  Aligned_cols=218  Identities=16%  Similarity=0.116  Sum_probs=162.7

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK   89 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~   89 (296)
                      ++++.++++++.++ ..    -.+++++|++++|.+..+|.+.|.++++|++|++++|.+.+.++...+    ..+++++
T Consensus        12 ~~v~C~~~~Lt~iP-~~----l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f----~~L~~l~   82 (350)
T 4ay9_X           12 RVFLCQESKVTEIP-SD----LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF----SNLPKLH   82 (350)
T ss_dssp             TEEEEESTTCCSCC-TT----CCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB----CSCTTCC
T ss_pred             CEEEecCCCCCccC-cC----cCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh----hcchhhh
Confidence            46777778888774 22    347899999999999999988899999999999999987665553322    3477888


Q ss_pred             eeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCCCccE
Q 022501           90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMK  168 (296)
Q Consensus        90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  168 (296)
                      .+.+.++..+..++...   +..+++|+.|+++++ .+..++. ......++..+++.++..+..++..........++.
T Consensus        83 ~~l~~~~N~l~~l~~~~---f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~  158 (350)
T 4ay9_X           83 EIRIEKANNLLYINPEA---FQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI  158 (350)
T ss_dssp             EEEEEEETTCCEECTTS---BCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEE
T ss_pred             hhhcccCCcccccCchh---hhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhh
Confidence            77777677777775433   567899999999986 4554544 344456788899988888887765433333457899


Q ss_pred             EEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcc
Q 022501          169 LRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLR  248 (296)
Q Consensus       169 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~  248 (296)
                      |+++++. ++++......       .++|+++.+.++..++.++.+. +..+++|+.|+++++ .++.+|..  .+.+|+
T Consensus       159 L~L~~N~-i~~i~~~~f~-------~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~  226 (350)
T 4ay9_X          159 LWLNKNG-IQEIHNSAFN-------GTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRT-RIHSLPSY--GLENLK  226 (350)
T ss_dssp             EECCSSC-CCEECTTSST-------TEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTS-CCCCCCSS--SCTTCC
T ss_pred             hcccccc-ccCCChhhcc-------ccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCC-CcCccChh--hhccch
Confidence            9998864 5566554333       6789999999888899988755 678899999999997 68888875  345666


Q ss_pred             eEEc
Q 022501          249 EVRK  252 (296)
Q Consensus       249 ~l~l  252 (296)
                      .|.+
T Consensus       227 ~L~~  230 (350)
T 4ay9_X          227 KLRA  230 (350)
T ss_dssp             EEEC
T ss_pred             Hhhh
Confidence            6665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.65  E-value=9.3e-16  Score=141.48  Aligned_cols=182  Identities=23%  Similarity=0.239  Sum_probs=133.8

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|++++++++++.+..+.  .+++|++|++++|.+..+++..+.++++|++|++++|.+.++.+     ...+.+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l   97 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLR--ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-----SWFGPL   97 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-----HHHTTC
T ss_pred             CCCccEEECcCCccCccChhhhh--cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-----HHhccC
Confidence            57899999999999998777777  89999999999999998887788999999999999998776543     113558


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      ++|++|+++++.. ..++.  ...+..+++|++|+++++..++.++. .+..+++|++|+++++. +....+. .+..++
T Consensus        98 ~~L~~L~Ls~n~l-~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~  172 (549)
T 2z81_A           98 SSLKYLNLMGNPY-QTLGV--TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQ-SLKSIR  172 (549)
T ss_dssp             TTCCEEECTTCCC-SSSCS--SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTT-TTTTCS
T ss_pred             CCCcEEECCCCcc-cccch--hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChh-hhhccc
Confidence            9999999998753 32211  11267789999999999876777764 57778999999999865 4433222 456778


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD  206 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  206 (296)
                      +|++|+++.+.. ..++...      ...+++|++|+++++.
T Consensus       173 ~L~~L~l~~n~~-~~~~~~~------~~~l~~L~~L~L~~n~  207 (549)
T 2z81_A          173 DIHHLTLHLSES-AFLLEIF------ADILSSVRYLELRDTN  207 (549)
T ss_dssp             EEEEEEEECSBS-TTHHHHH------HHSTTTBSEEEEESCB
T ss_pred             cCceEecccCcc-cccchhh------HhhcccccEEEccCCc
Confidence            888888877653 1111110      1126677777777653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.65  E-value=2.5e-15  Score=126.30  Aligned_cols=180  Identities=17%  Similarity=0.214  Sum_probs=121.6

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .+++++|+++++++..+.+..+.  .+++|++|++++|.+..++...+.++++|++|++++|.+..+.+     .....+
T Consensus        36 ~~~l~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l  108 (270)
T 2o6q_A           36 PADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-----GVFDQL  108 (270)
T ss_dssp             CTTCSEEECCSSCCSCCCTTSSS--SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-----TTTTTC
T ss_pred             CCCCCEEECcCCCCCeeCHHHhc--CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-----hHcccc
Confidence            45799999999999998766777  89999999999999999998888999999999999997765432     112447


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      ++|++|.++++. +..++...   +..+++|+.|+++++ .+..++.. +..+++|++|+++++ .+..++.. .+..++
T Consensus       109 ~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~  181 (270)
T 2o6q_A          109 VNLAELRLDRNQ-LKSLPPRV---FDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEG-AFDKLT  181 (270)
T ss_dssp             SSCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCT
T ss_pred             cCCCEEECCCCc-cCeeCHHH---hCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-cCcEeChh-HhccCC
Confidence            888888888753 33332221   456777888888775 34444443 456777777777765 34444322 345566


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD  206 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  206 (296)
                      +|++|++++|. +..++..      .+..+++|+.|++++.+
T Consensus       182 ~L~~L~L~~N~-l~~~~~~------~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          182 ELKTLKLDNNQ-LKRVPEG------AFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TCCEEECCSSC-CSCCCTT------TTTTCTTCCEEECCSSC
T ss_pred             CcCEEECCCCc-CCcCCHH------HhccccCCCEEEecCCC
Confidence            77777777653 2322221      12235666666666544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.3e-15  Score=146.64  Aligned_cols=235  Identities=13%  Similarity=0.051  Sum_probs=149.0

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCC-CCc--cChHHHhcC-------CcccEEEEeccccceEee
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDK-SDN--FSIGFLQRF-------HNVERLKLRNSSYKEIFS   74 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~l-------~~L~~L~l~~~~~~~~~~   74 (296)
                      .+++|++|+|++|++.+..|..+.  .+++|+.|++++|. +..  +|. .+..+       ++|++|++++|.+..+..
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~--~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~  565 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLY--DLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLEEFPA  565 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGG--GCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred             cCCCCCEEECcCCCCCccChHHHh--CCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence            478899999999886665566677  89999999998886 543  554 33444       499999999987764322


Q ss_pred             cCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCC-ccEEEeccCcCccc
Q 022501           75 NGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFEN-LTTLEVSYCQRLKN  153 (296)
Q Consensus        75 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~c~~l~~  153 (296)
                      ..    ....+++|+.|.++++.. ..++ .    +..+++|+.|+++++. +..+|..+..+++ |+.|+++++. +..
T Consensus       566 ~~----~l~~L~~L~~L~Ls~N~l-~~lp-~----~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~  633 (876)
T 4ecn_A          566 SA----SLQKMVKLGLLDCVHNKV-RHLE-A----FGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKY  633 (876)
T ss_dssp             HH----HHTTCTTCCEEECTTSCC-CBCC-C----CCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCS
T ss_pred             hh----hhhcCCCCCEEECCCCCc-ccch-h----hcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCc
Confidence            00    334588888888887653 3555 2    6667788888887764 4466766777777 8888887754 444


Q ss_pred             cCCcccccCC--CCccEEEEeCccccceeccc---cc-------------------ccccccccCCccceeeccCCcCcc
Q 022501          154 LVSSSTAKSL--VCLMKLRIDGCKLMTEIISS---EG-------------------DVEEDEIVFSRLKWLSLECLDSLT  209 (296)
Q Consensus       154 ~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~---~~-------------------~~~~~~~~~~~L~~L~l~~~~~L~  209 (296)
                      ++.  .+...  ++|+.|++++|.....++.-   .+                   -....+..+++|+.|+++++ .++
T Consensus       634 lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~  710 (876)
T 4ecn_A          634 IPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMT  710 (876)
T ss_dssp             CCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCS
T ss_pred             Cch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCC
Confidence            432  12222  33666666665432211100   00                   00001123677888888775 355


Q ss_pred             eecCCCcc------ccCCCccEEeeccCCccccccCCcc--cCCCcceEEcccCCcc
Q 022501          210 SFCSGNCT------FKFPSLEDLFVIDCPKMMIFSFGVL--STPRLREVRKNWGLDK  258 (296)
Q Consensus       210 ~l~~~~~~------~~~~~L~~L~l~~c~~l~~~~~~~~--~~~~L~~l~l~~~~~~  258 (296)
                      .++.....      .++++|+.|++++| .++.+|..+.  .+++|+.|+++.+...
T Consensus       711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~L~  766 (876)
T 4ecn_A          711 SIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFS  766 (876)
T ss_dssp             CCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSCCS
T ss_pred             ccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCCCC
Confidence            55543211      12348999999987 5668887776  7899999999765543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.64  E-value=1.2e-15  Score=130.93  Aligned_cols=227  Identities=17%  Similarity=0.090  Sum_probs=129.1

Q ss_pred             ceEEEeeccCccccccCCCC------CCcCCCccEEEeccCCCC-ccChHHH-hcCCcccEEEEeccccceEeecCcccc
Q 022501            9 LEELKLSGKDITMICHDHLP------KHLFQNLKSLEIVSDKSD-NFSIGFL-QRFHNVERLKLRNSSYKEIFSNGEVEK   80 (296)
Q Consensus         9 L~~L~L~~~~~~~~~~~~~~------~~~l~~L~~L~l~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~   80 (296)
                      |++|+++++.+.........      ...+++|++|++++|.+. .+|..++ ..+++|++|++++|.+.+. + ..+..
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~-~~~~~  142 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-D-AWLAE  142 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-S-SHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-h-HHHHH
Confidence            56666666665443100000      002667777777776665 4444332 6677777777777766554 1 11111


Q ss_pred             -ccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccc--cccCc--cccCCccEEEeccCcCccccC
Q 022501           81 -QAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLIN--LVPSS--ASFENLTTLEVSYCQRLKNLV  155 (296)
Q Consensus        81 -~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~--~~l~~L~~L~l~~c~~l~~~~  155 (296)
                       ....+++|++|.++++.. ..++...   +..+++|+.|+++++...+.  ++...  ..+++|++|+++++. ++.+.
T Consensus       143 l~~~~~~~L~~L~L~~N~l-~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~  217 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHS-LNFSCEQ---VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPS  217 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSC-CCCCTTT---CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHH
T ss_pred             HHHhhcCCCcEEEeeCCCC-ccchHHH---hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchH
Confidence             000126777777776543 2332111   55677788888877654332  22222  557788888887753 43221


Q ss_pred             C--cccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCc
Q 022501          156 S--SSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPK  233 (296)
Q Consensus       156 ~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~  233 (296)
                      .  ...+..+++|++|++++|......+..      ....+++|++|+++++. ++.++...  .  ++|++|+++++ .
T Consensus       218 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~~l~~L~~L~Ls~N~-l~~ip~~~--~--~~L~~L~Ls~N-~  285 (312)
T 1wwl_A          218 GVCSALAAARVQLQGLDLSHNSLRDAAGAP------SCDWPSQLNSLNLSFTG-LKQVPKGL--P--AKLSVLDLSYN-R  285 (312)
T ss_dssp             HHHHHHHHTTCCCSEEECTTSCCCSSCCCS------CCCCCTTCCEEECTTSC-CSSCCSSC--C--SEEEEEECCSS-C
T ss_pred             HHHHHHHhcCCCCCEEECCCCcCCcccchh------hhhhcCCCCEEECCCCc-cChhhhhc--c--CCceEEECCCC-C
Confidence            1  112346678888888877543322111      12236788888888764 56655432  1  77889999886 5


Q ss_pred             cccccCCcccCCCcceEEcccC
Q 022501          234 MMIFSFGVLSTPRLREVRKNWG  255 (296)
Q Consensus       234 l~~~~~~~~~~~~L~~l~l~~~  255 (296)
                      ++.+|. +..+++|++++++.+
T Consensus       286 l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          286 LDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             CCSCCC-TTTSCEEEEEECTTC
T ss_pred             CCCChh-HhhCCCCCEEeccCC
Confidence            777766 567888888888744

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.63  E-value=1.9e-14  Score=133.21  Aligned_cols=221  Identities=16%  Similarity=0.138  Sum_probs=157.2

Q ss_pred             ccceEEEeeccCccccccCCC-CC--CcCCCccEEEeccCCCCccChHHHhcC---CcccEEEEeccccceEeecCcccc
Q 022501            7 ANLEELKLSGKDITMICHDHL-PK--HLFQNLKSLEIVSDKSDNFSIGFLQRF---HNVERLKLRNSSYKEIFSNGEVEK   80 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~-~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~   80 (296)
                      ++|++|+++++.+.+..+..+ ..  ..++.|+.+++..+.. .+|...+..+   .+|++|++++|.+.....      
T Consensus       276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~------  348 (562)
T 3a79_B          276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC------  348 (562)
T ss_dssp             SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC------
T ss_pred             ccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC------
Confidence            378888888887763323333 10  1556666666666655 6675444333   679999999996644321      


Q ss_pred             ccCCccccceeEecccccccccccccCcccccCCCccEEEeccCcccccc---ccCccccCCccEEEeccCcCccc-cCC
Q 022501           81 QAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINL---VPSSASFENLTTLEVSYCQRLKN-LVS  156 (296)
Q Consensus        81 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~c~~l~~-~~~  156 (296)
                       ...+++|++|.++++.....++..    +..+++|+.|+++++ .+..+   +..+..+++|+.|+++++. +.. ++.
T Consensus       349 -~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~  421 (562)
T 3a79_B          349 -PPSPSSFTFLNFTQNVFTDSVFQG----CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYD  421 (562)
T ss_dssp             -CSSCCCCCEEECCSSCCCTTTTTT----CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSS
T ss_pred             -ccCCCCceEEECCCCccccchhhh----hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccCh
Confidence             145899999999987644434433    677899999999986 44443   3456778999999999865 444 433


Q ss_pred             cccccCCCCccEEEEeCccccceecccccccccccccC-CccceeeccCCcCcceecCCCccccCCCccEEeeccCCccc
Q 022501          157 SSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVF-SRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMM  235 (296)
Q Consensus       157 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~  235 (296)
                       ..+..+++|++|++++|.....++.          .+ ++|++|+++++ +++.++...  ..+++|++|+++++ .++
T Consensus       422 -~~~~~l~~L~~L~l~~n~l~~~~~~----------~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~  486 (562)
T 3a79_B          422 -RTCAWAESILVLNLSSNMLTGSVFR----------CLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLK  486 (562)
T ss_dssp             -CCCCCCTTCCEEECCSSCCCGGGGS----------SCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCC
T ss_pred             -hhhcCcccCCEEECCCCCCCcchhh----------hhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCC
Confidence             2467889999999999875433322          13 69999999997 578877654  48999999999997 577


Q ss_pred             cccCC-cccCCCcceEEcccCC
Q 022501          236 IFSFG-VLSTPRLREVRKNWGL  256 (296)
Q Consensus       236 ~~~~~-~~~~~~L~~l~l~~~~  256 (296)
                      .+|.. +..+++|+.++++.+.
T Consensus       487 ~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          487 SVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             CCCTTSTTTCTTCCCEECCSCC
T ss_pred             CCCHHHHhcCCCCCEEEecCCC
Confidence            88887 6788999999998543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=6.2e-15  Score=126.29  Aligned_cols=189  Identities=18%  Similarity=0.224  Sum_probs=148.5

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD  110 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  110 (296)
                      .+++|+.|++.+|.+..++  .+..+++|++|++++|.+..+.+       ...+++|++|.++++. +..++ .    +
T Consensus        39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-------~~~l~~L~~L~L~~n~-l~~~~-~----~  103 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-------LKNLTKITELELSGNP-LKNVS-A----I  103 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-------GTTCCSCCEEECCSCC-CSCCG-G----G
T ss_pred             HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh-------HccCCCCCEEEccCCc-CCCch-h----h
Confidence            6899999999999888887  47889999999999998776644       3459999999999875 44543 2    6


Q ss_pred             ccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccc
Q 022501          111 SVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEED  190 (296)
Q Consensus       111 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  190 (296)
                      ..+++|+.|+++++. +..++. +..+++|++|+++++. +....   .+..+++|++|++++|. +..+..        
T Consensus       104 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~--------  168 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNIS---PLAGLTNLQYLSIGNAQ-VSDLTP--------  168 (308)
T ss_dssp             TTCTTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCG---GGGGCTTCCEEECCSSC-CCCCGG--------
T ss_pred             cCCCCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCc---cccCCCCccEEEccCCc-CCCChh--------
Confidence            778999999999974 555553 6778999999999864 55553   26788999999999985 333333        


Q ss_pred             cccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccC
Q 022501          191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWG  255 (296)
Q Consensus       191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~  255 (296)
                      +..+++|+.|+++++. +++++.   +..+++|++|++++| .++.++. +..+++|+.++++.+
T Consensus       169 l~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          169 LANLSKLTTLKADDNK-ISDISP---LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEEE
T ss_pred             hcCCCCCCEEECCCCc-cCcChh---hcCCCCCCEEEccCC-ccCcccc-ccCCCCCCEEEccCC
Confidence            3348999999999874 666654   468899999999998 4666664 568899999999753

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.62  E-value=1.1e-16  Score=138.67  Aligned_cols=225  Identities=17%  Similarity=0.167  Sum_probs=158.5

Q ss_pred             ceEEEeeccCccccccCCCCCCcC--CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            9 LEELKLSGKDITMICHDHLPKHLF--QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         9 L~~L~L~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      ++.++++++++..   ..+.  .+  ++++.|++.++.+...+.. +..+++|++|++++|.+...    ++......++
T Consensus        49 ~~~l~l~~~~~~~---~~~~--~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~----~~~~~~~~~~  118 (336)
T 2ast_B           49 WQTLDLTGKNLHP---DVTG--RLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS----TLHGILSQCS  118 (336)
T ss_dssp             SSEEECTTCBCCH---HHHH--HHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH----HHHHHHTTBC
T ss_pred             heeeccccccCCH---HHHH--hhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH----HHHHHHhhCC
Confidence            6788888876553   2234  45  8999999988877655443 34689999999999954321    1233345699


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCccccc--cccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLIN--LVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      +|++|+++++......+..    +..+++|++|++++|..++.  ++..+..+++|++|++++|..+++......+..++
T Consensus       119 ~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          119 KLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             CCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             CCCEEeCcCcccCHHHHHH----HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence            9999999998533233222    56689999999999966653  55556778999999999986666532223467788


Q ss_pred             -CccEEEEeCcc-ccc--eecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc-C
Q 022501          165 -CLMKLRIDGCK-LMT--EIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS-F  239 (296)
Q Consensus       165 -~L~~L~l~~~~-~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~-~  239 (296)
                       +|++|++++|. .+.  .++..       ...+++|++|+++++..+++.... .+..+++|++|++++|..+..-. .
T Consensus       195 ~~L~~L~l~~~~~~~~~~~l~~~-------~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~  266 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQKSDLSTL-------VRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLL  266 (336)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHH-------HHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGG
T ss_pred             cCCCEEEeCCCcccCCHHHHHHH-------HhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHH
Confidence             99999999985 332  22221       234899999999999866653332 24678999999999997443211 1


Q ss_pred             CcccCCCcceEEcccC
Q 022501          240 GVLSTPRLREVRKNWG  255 (296)
Q Consensus       240 ~~~~~~~L~~l~l~~~  255 (296)
                      .+..+++|+.|+++++
T Consensus       267 ~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGCTTCCEEECTTS
T ss_pred             HHhcCCCCCEEeccCc
Confidence            3457899999999754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.62  E-value=2e-15  Score=127.08  Aligned_cols=212  Identities=20%  Similarity=0.154  Sum_probs=134.0

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +..+..+.+..+.+.+..  ...  .+++|+.|++.++.+..++  .+..+++|++|++++|.+..+.       ....+
T Consensus        18 ~~~l~~l~l~~~~~~~~~--~~~--~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~-------~l~~l   84 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDAV--TQN--ELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS-------ALKEL   84 (272)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHH--HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG-------GGTTC
T ss_pred             HHHHHHHHhcCccccccc--ccc--cccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCch-------hhcCC
Confidence            344444555554444432  122  6788999999888877766  3678899999999988766542       23458


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      ++|++|.++++. +..++...   +..+++|++|+++++. +..++. .+..+++|++|++++| .++.++.. .+..++
T Consensus        85 ~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~  157 (272)
T 3rfs_A           85 TNLTYLILTGNQ-LQSLPNGV---FDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKG-VFDKLT  157 (272)
T ss_dssp             TTCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT
T ss_pred             CCCCEEECCCCc-cCccChhH---hcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCccCHH-HhccCc
Confidence            888888888764 33333221   4567888888888864 444444 3566788888888876 45554432 346778


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccC
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLST  244 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  244 (296)
                      +|++|++++|. +..++..      .+..+++|+.|+++++. ++.++... +..+++|+.|++++++...       .+
T Consensus       158 ~L~~L~l~~n~-l~~~~~~------~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~l~~N~~~~-------~~  221 (272)
T 3rfs_A          158 NLTELDLSYNQ-LQSLPEG------VFDKLTQLKDLRLYQNQ-LKSVPDGV-FDRLTSLQYIWLHDNPWDC-------TC  221 (272)
T ss_dssp             TCCEEECCSSC-CCCCCTT------TTTTCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSSCBCC-------CT
T ss_pred             cCCEEECCCCC-cCccCHH------HhcCCccCCEEECCCCc-CCccCHHH-HhCCcCCCEEEccCCCccc-------cC
Confidence            88888888874 3333221      12337788888887764 55554432 4567788888887765322       34


Q ss_pred             CCcceEEcc
Q 022501          245 PRLREVRKN  253 (296)
Q Consensus       245 ~~L~~l~l~  253 (296)
                      ++|+.++++
T Consensus       222 ~~l~~l~~~  230 (272)
T 3rfs_A          222 PGIRYLSEW  230 (272)
T ss_dssp             TTTHHHHHH
T ss_pred             cHHHHHHHH
Confidence            555655543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.61  E-value=4.9e-16  Score=133.38  Aligned_cols=206  Identities=15%  Similarity=0.069  Sum_probs=94.8

Q ss_pred             ccEEEeccCCCC--ccChHHH------hcCCcccEEEEeccccceEeecCccccccCCccccceeEeccccccccccccc
Q 022501           35 LKSLEIVSDKSD--NFSIGFL------QRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQC  106 (296)
Q Consensus        35 L~~L~l~~~~~~--~~~~~~~------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  106 (296)
                      |+.|++++|.+.  .++....      .++++|++|++++|.+.+..+...+   ...+++|++|+++++. +..++.. 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~~-  139 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL---EATGPDLNILNLRNVS-WATRDAW-  139 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS---SCCSCCCSEEEEESCB-CSSSSSH-
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH---HhcCCCccEEEccCCC-CcchhHH-
Confidence            566666555443  2332211      1456666666666655433221110   1346666666666543 2222211 


Q ss_pred             CcccccC-----CCccEEEeccCccccccccCccccCCccEEEeccCcCcccc--CCcccccCCCCccEEEEeCccccce
Q 022501          107 YKLDSVF-----QNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNL--VSSSTAKSLVCLMKLRIDGCKLMTE  179 (296)
Q Consensus       107 ~~~~~~~-----~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~l~~L~~L~l~~~~~~~~  179 (296)
                         +..+     ++|++|+++++......+..+..+++|++|+++++......  +.......+++|++|++++|.. ..
T Consensus       140 ---~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l-~~  215 (312)
T 1wwl_A          140 ---LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ET  215 (312)
T ss_dssp             ---HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC-CC
T ss_pred             ---HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC-cc
Confidence               2222     56666666665332222234555666666666655422211  1011124556666666666532 21


Q ss_pred             ecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501          180 IISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      +.....   ..+..+++|++|+++++. ++..........+++|++|++++| .++.+|..+.  ++|++|+++.+.
T Consensus       216 ~~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~  285 (312)
T 1wwl_A          216 PSGVCS---ALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR  285 (312)
T ss_dssp             HHHHHH---HHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSSC
T ss_pred             hHHHHH---HHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCCC
Confidence            110000   001124566666666543 444332222334566666666665 3455555443  566666665443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.61  E-value=4.8e-14  Score=131.46  Aligned_cols=56  Identities=20%  Similarity=0.019  Sum_probs=43.4

Q ss_pred             CCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCC
Q 022501          194 FSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       194 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      +++|+.|+++++ +++.++.     .+++|+.|++++| .++.+|..+..+++|+.|+++.+.
T Consensus       240 l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          240 PSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            677888888776 4666554     4588999999987 577888888888999999997544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=124.67  Aligned_cols=232  Identities=16%  Similarity=0.066  Sum_probs=139.5

Q ss_pred             cceEEEeeccCccccccC-CCCCCcCCCccEEEeccCCCCccChHHH--hcCCcccEEEEeccccceEeecCccccccCC
Q 022501            8 NLEELKLSGKDITMICHD-HLPKHLFQNLKSLEIVSDKSDNFSIGFL--QRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .++.+.+.+..+...... ......+++|++|++++|.+....+..+  ..+++|++|++++|.+....+... ......
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA-ELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-HHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-HHHhhh
Confidence            356666666544321100 0010134678888888887664333333  678888888888886654222000 011235


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccc--cc--cCccccCCccEEEeccCcCccccCCc--c
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLIN--LV--PSSASFENLTTLEVSYCQRLKNLVSS--S  158 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~--~~~~~l~~L~~L~l~~c~~l~~~~~~--~  158 (296)
                      +++|++|.++++.. ..++...   +..+++|++|+++++...+.  ++  .....+++|++|++++|. ++.++..  .
T Consensus       144 ~~~L~~L~Ls~n~l-~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~  218 (310)
T 4glp_A          144 KPGLKVLSIAQAHS-PAFSCEQ---VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAA  218 (310)
T ss_dssp             CSCCCEEEEECCSS-CCCCTTS---CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHH
T ss_pred             ccCCCEEEeeCCCc-chhhHHH---hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHH
Confidence            77888888887654 2322211   55678888888888754432  22  223567889999998764 4433211  1


Q ss_pred             cccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc
Q 022501          159 TAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS  238 (296)
Q Consensus       159 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~  238 (296)
                      .+..+++|++|++++|......+.....    ...+++|++|+++++. ++.++...    +++|+.|++++| .++.+|
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~----~~~~~~L~~L~Ls~N~-l~~lp~~~----~~~L~~L~Ls~N-~l~~~~  288 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPR----CMWSSALNSLNLSFAG-LEQVPKGL----PAKLRVLDLSSN-RLNRAP  288 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSS----CCCCTTCCCEECCSSC-CCSCCSCC----CSCCSCEECCSC-CCCSCC
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHh----ccCcCcCCEEECCCCC-CCchhhhh----cCCCCEEECCCC-cCCCCc
Confidence            2356788999999887643332322221    2224799999998864 66665433    378999999887 566766


Q ss_pred             CCcccCCCcceEEcccCC
Q 022501          239 FGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       239 ~~~~~~~~L~~l~l~~~~  256 (296)
                      . ...+++|+.|+++.+.
T Consensus       289 ~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          289 Q-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             C-TTSCCCCSCEECSSTT
T ss_pred             h-hhhCCCccEEECcCCC
Confidence            5 3477899999987543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.55  E-value=2.9e-14  Score=120.02  Aligned_cols=204  Identities=17%  Similarity=0.139  Sum_probs=152.7

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      ++|++|++++++++++.+..+.  .+++|++|++++|.+..++...+.++++|++|++++|.+..+.+     .....++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-----GAFSGLS  100 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCT
T ss_pred             CCccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-----hhhcCCc
Confidence            4699999999999998766777  89999999999999998887788999999999999998877643     1234589


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCcccc-ccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLI-NLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      +|++|.++++.. ..++...   +..+++|++|+++++.... .++..+..+++|++|+++++. ++..+.. .+..+++
T Consensus       101 ~L~~L~l~~n~l-~~~~~~~---~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~  174 (276)
T 2z62_A          101 SLQKLVAVETNL-ASLENFP---IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCT-DLRVLHQ  174 (276)
T ss_dssp             TCCEEECTTSCC-CCSTTCC---CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGG-GGHHHHT
T ss_pred             cccEEECCCCCc-cccCchh---cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHH-Hhhhhhh
Confidence            999999998643 3332211   6678999999999874333 256677889999999999864 5544322 2344455


Q ss_pred             cc----EEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCc
Q 022501          166 LM----KLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPK  233 (296)
Q Consensus       166 L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~  233 (296)
                      |+    +|+++++. +..+......       ..+|++|+++++. ++.++... +..+++|+.|++++++.
T Consensus       175 L~~l~l~L~ls~n~-l~~~~~~~~~-------~~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          175 MPLLNLSLDLSLNP-MNFIQPGAFK-------EIRLKELALDTNQ-LKSVPDGI-FDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             CTTCCEEEECCSSC-CCEECTTSSC-------SCCEEEEECCSSC-CSCCCTTT-TTTCCSCCEEECCSSCB
T ss_pred             ccccceeeecCCCc-ccccCccccC-------CCcccEEECCCCc-eeecCHhH-hcccccccEEEccCCcc
Confidence            55    88888875 4444432222       4589999999875 77776543 56789999999998753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.54  E-value=2e-13  Score=127.58  Aligned_cols=64  Identities=13%  Similarity=0.046  Sum_probs=47.2

Q ss_pred             cccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccC-CcccCCCcceEEcccCCc
Q 022501          191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF-GVLSTPRLREVRKNWGLD  257 (296)
Q Consensus       191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~l~~~~~  257 (296)
                      +..+++|++|+++++ +++.+++.. +..+++|++|+++++ +++.++. .+..+++|+.|+++.+..
T Consensus       490 ~~~l~~L~~L~Ls~N-~L~~l~~~~-f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l  554 (635)
T 4g8a_A          490 FTELRNLTFLDLSQC-QLEQLSPTA-FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHI  554 (635)
T ss_dssp             CTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred             hhhccccCEEECCCC-ccCCcChHH-HcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcC
Confidence            445788888888887 477776544 567889999999887 4666654 355778999999976543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.53  E-value=8.9e-14  Score=118.05  Aligned_cols=176  Identities=15%  Similarity=0.075  Sum_probs=135.4

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .+++++|++++|.+..+.+..+.  .+++|+.|++++|.+..++..  +.+++|++|++++|.+..+.      .....+
T Consensus        30 ~~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~------~~~~~l   99 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLP------LLGQTL   99 (290)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCSSCC------CCTTTC
T ss_pred             CCCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCCcCc------hhhccC
Confidence            57899999999999998777777  899999999999998877643  78999999999999877542      234568


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      ++|++|.++++. +..++...   +..+++|+.|+++++ .+..++.. +..+++|+.|+++++ .++.++.. .+..++
T Consensus       100 ~~L~~L~l~~N~-l~~l~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~  172 (290)
T 1p9a_G          100 PALTVLDVSFNR-LTSLPLGA---LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAG-LLNGLE  172 (290)
T ss_dssp             TTCCEEECCSSC-CCCCCSST---TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTT-TTTTCT
T ss_pred             CCCCEEECCCCc-CcccCHHH---HcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHH-HhcCcC
Confidence            999999999864 44443322   667899999999986 45556554 467899999999975 56666543 457789


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD  206 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  206 (296)
                      +|++|++++|. +..++.....       .++|+.+++.+.+
T Consensus       173 ~L~~L~L~~N~-l~~ip~~~~~-------~~~L~~l~L~~Np  206 (290)
T 1p9a_G          173 NLDTLLLQENS-LYTIPKGFFG-------SHLLPFAFLHGNP  206 (290)
T ss_dssp             TCCEEECCSSC-CCCCCTTTTT-------TCCCSEEECCSCC
T ss_pred             CCCEEECCCCc-CCccChhhcc-------cccCCeEEeCCCC
Confidence            99999999875 4455543333       6788999988755

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.53  E-value=7.6e-13  Score=123.66  Aligned_cols=238  Identities=14%  Similarity=0.020  Sum_probs=145.0

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecC---------
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNG---------   76 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---------   76 (296)
                      ..+|+.|++.++.+..+.   ..  .++.|+.+++.++.....+.  ...+++|+.|+++.+.+.......         
T Consensus       327 ~~~L~~L~l~~~~~~~~~---~~--~l~~L~~l~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L  399 (635)
T 4g8a_A          327 NFGWQHLELVNCKFGQFP---TL--KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL  399 (635)
T ss_dssp             CCCCSEEEEESCEESSCC---CC--BCTTCCEEEEESCCSCCBCC--CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred             chhhhhhhcccccccCcC---cc--cchhhhhcccccccCCCCcc--cccccccccchhhccccccccccccchhhhhhh
Confidence            456777777776655442   11  34455555554444332221  123445555555444332221100         


Q ss_pred             -----------ccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEe
Q 022501           77 -----------EVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEV  145 (296)
Q Consensus        77 -----------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l  145 (296)
                                 ........+++|+.+.+.++......+..   .+..+++++.++++.+......+.....++.|+.|++
T Consensus       400 ~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~---~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L  476 (635)
T 4g8a_A          400 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  476 (635)
T ss_dssp             CEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             hhhhccccccccccccccccccccchhhhhcccccccccc---ccccccccccccccccccccccccccccchhhhhhhh
Confidence                       00112234677777777665544332222   1456778888888876544444555677889999999


Q ss_pred             ccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccE
Q 022501          146 SYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLED  225 (296)
Q Consensus       146 ~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~  225 (296)
                      +++.......+. .+..+++|++|++++|. ++.++..      .+..+++|++|+++++ +++.++... +..+++|+.
T Consensus       477 s~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~-L~~l~~~------~f~~l~~L~~L~Ls~N-~l~~l~~~~-~~~l~~L~~  546 (635)
T 4g8a_A          477 AGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSPT------AFNSLSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQV  546 (635)
T ss_dssp             TTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECTT------TTTTCTTCCEEECTTS-CCCBCCCGG-GTTCTTCCE
T ss_pred             hhcccccccCch-hhhhccccCEEECCCCc-cCCcChH------HHcCCCCCCEEECCCC-cCCCCChhH-HhCCCCCCE
Confidence            987655544332 46788999999999985 4444322      2334899999999986 477776644 567899999


Q ss_pred             EeeccCCccccccCCcccC-CCcceEEcccCCcccccCCCc
Q 022501          226 LFVIDCPKMMIFSFGVLST-PRLREVRKNWGLDKGCWEGNL  265 (296)
Q Consensus       226 L~l~~c~~l~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~  265 (296)
                      |+++++......|..+..+ ++|+.|+++  +..|.|+.++
T Consensus       547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~--~Np~~C~C~~  585 (635)
T 4g8a_A          547 LDYSLNHIMTSKKQELQHFPSSLAFLNLT--QNDFACTCEH  585 (635)
T ss_dssp             EECTTSCCCBCCSSCTTCCCTTCCEEECT--TCCBCCSGGG
T ss_pred             EECCCCcCCCCCHHHHHhhhCcCCEEEee--CCCCcccCCc
Confidence            9999975444445555566 689999998  4446555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.53  E-value=7.4e-14  Score=111.67  Aligned_cols=129  Identities=14%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD  110 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  110 (296)
                      .+++|+.|++++|.+..++  .+..+++|++|++.+|.+..+..       ...+++|++|.++++..-...+..    +
T Consensus        42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~~-------l~~l~~L~~L~l~~n~l~~~~~~~----l  108 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYNP-------ISGLSNLERLRIMGKDVTSDKIPN----L  108 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCGG-------GTTCTTCCEEEEECTTCBGGGSCC----C
T ss_pred             hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcchh-------hhcCCCCCEEEeECCccCcccChh----h
Confidence            3445555555554444444  24445555555555543322211       122455555555543221111111    3


Q ss_pred             ccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcc
Q 022501          111 SVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCK  175 (296)
Q Consensus       111 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~  175 (296)
                      ..+++|+.|+++++......+..+..+++|++|++++|..+++++   .+..+++|++|++++|.
T Consensus       109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBC
T ss_pred             cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCC
Confidence            445555555555543322233334445555555555554344432   23455555555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.52  E-value=7.3e-14  Score=118.65  Aligned_cols=58  Identities=16%  Similarity=0.281  Sum_probs=26.6

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEecccc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSY   69 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   69 (296)
                      +++|++|+++++.++.+.  .+.  .+++|+.|++++|.+..++.  +..+++|++|++++|.+
T Consensus        45 l~~L~~L~l~~~~i~~~~--~~~--~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ--GIQ--YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             cCcccEEEccCCCcccCh--hHh--cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            344455555544444431  122  44555555555544444432  44445555555554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.51  E-value=1.3e-13  Score=114.53  Aligned_cols=176  Identities=15%  Similarity=0.140  Sum_probs=126.0

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      ++.+++++++++++.++ ..    ..++++.|++++|.+..++...+.++++|++|++++|.+..+.+     .....++
T Consensus        14 ~~~~~l~~~~~~l~~~p-~~----~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~   83 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVP-SG----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-----GVFDDLT   83 (251)
T ss_dssp             GGGTEEECTTCCCSSCC-SC----CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCT
T ss_pred             CCCeEEecCCCCccccC-CC----CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-----hHhccCC
Confidence            45678888888888764 22    23689999999998888877778889999999999987766533     1224588


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      +|+.|.++++. +..++...   +..+++|+.|+++++ .+..++.. +..+++|+.|+++++ .+..++.. .+..+++
T Consensus        84 ~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~  156 (251)
T 3m19_A           84 ELGTLGLANNQ-LASLPLGV---FDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAG-AFDKLTN  156 (251)
T ss_dssp             TCCEEECTTSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTT
T ss_pred             cCCEEECCCCc-ccccChhH---hcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCHH-HcCcCcC
Confidence            99999998764 33443221   566889999999886 55566654 467889999999875 56665542 4677889


Q ss_pred             ccEEEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501          166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD  206 (296)
Q Consensus       166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  206 (296)
                      |++|++++|.. ..++..      .+..+++|+.|++++.+
T Consensus       157 L~~L~L~~N~l-~~~~~~------~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          157 LQTLSLSTNQL-QSVPHG------AFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCEEECCSSCC-SCCCTT------TTTTCTTCCEEECCSCC
T ss_pred             CCEEECCCCcC-CccCHH------HHhCCCCCCEEEeeCCc
Confidence            99999998753 333321      23348899999998865

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.51  E-value=6.9e-13  Score=119.55  Aligned_cols=117  Identities=16%  Similarity=0.071  Sum_probs=72.1

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|++++|++++++ .     ..++|++|++++|.+..+|  .++++++|++|++.+|.+.++..         .
T Consensus       151 ~l~~L~~L~l~~N~l~~lp-~-----~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~---------~  213 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSLKKLP-D-----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPD---------L  213 (454)
T ss_dssp             TCTTCCEEECCSSCCSCCC-C-----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCC---------C
T ss_pred             CCCCCCEEECCCCcCcccC-C-----CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCC---------C
Confidence            3678888888888877653 1     2458888888888877776  36778888888888886655321         1


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYC  148 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c  148 (296)
                      .++|+.|.++++. +..++.     +..+++|+.|+++++ .+..++..   +++|+.|+++++
T Consensus       214 ~~~L~~L~l~~n~-l~~lp~-----~~~l~~L~~L~l~~N-~l~~l~~~---~~~L~~L~l~~N  267 (454)
T 1jl5_A          214 PLSLESIVAGNNI-LEELPE-----LQNLPFLTTIYADNN-LLKTLPDL---PPSLEALNVRDN  267 (454)
T ss_dssp             CTTCCEEECCSSC-CSSCCC-----CTTCTTCCEEECCSS-CCSSCCSC---CTTCCEEECCSS
T ss_pred             cCcccEEECcCCc-CCcccc-----cCCCCCCCEEECCCC-cCCccccc---ccccCEEECCCC
Confidence            2466666666653 333331     445566666666654 23333321   345555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.50  E-value=7.3e-13  Score=123.52  Aligned_cols=203  Identities=15%  Similarity=0.129  Sum_probs=94.9

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      ++|++|++++|+++.++.      .+++|++|++++|.+..+|.    .+++|++|++++|.+..+..         .++
T Consensus        61 ~~L~~L~L~~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---------~l~  121 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---------LPS  121 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC------CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---------CCT
T ss_pred             CCCcEEEecCCCCCCCCC------cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---------CCC
Confidence            344444444444443321      23445555555544444442    34455555555444433211         244


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCc
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCL  166 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  166 (296)
                      +|+.|.++++. +..++.       .+++|+.|++++| .+..++..   +++|+.|+++++ .++.++     ..+++|
T Consensus       122 ~L~~L~L~~N~-l~~lp~-------~l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~-----~~~~~L  183 (622)
T 3g06_A          122 GLCKLWIFGNQ-LTSLPV-------LPPGLQELSVSDN-QLASLPAL---PSELCKLWAYNN-QLTSLP-----MLPSGL  183 (622)
T ss_dssp             TCCEEECCSSC-CSCCCC-------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCC-----CCCTTC
T ss_pred             CcCEEECCCCC-CCcCCC-------CCCCCCEEECcCC-cCCCcCCc---cCCCCEEECCCC-CCCCCc-----ccCCCC
Confidence            55555555432 222221       1356666666664 33333321   334445544442 222221     233556


Q ss_pred             cEEEEeCccccceecccccc----------cccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccc
Q 022501          167 MKLRIDGCKLMTEIISSEGD----------VEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMI  236 (296)
Q Consensus       167 ~~L~l~~~~~~~~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~  236 (296)
                      +.|++++|. +..++.....          .......+++|+.|+++++ +++.++     ..+++|+.|++++| .++.
T Consensus       184 ~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~  255 (622)
T 3g06_A          184 QELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTS  255 (622)
T ss_dssp             CEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSC
T ss_pred             cEEECCCCC-CCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCc
Confidence            666665543 2222110000          0000012456666776665 355544     23477778888776 5666


Q ss_pred             ccCCcccCCCcceEEcccCCc
Q 022501          237 FSFGVLSTPRLREVRKNWGLD  257 (296)
Q Consensus       237 ~~~~~~~~~~L~~l~l~~~~~  257 (296)
                      +|.   .+++|+.|+++.+..
T Consensus       256 lp~---~~~~L~~L~Ls~N~L  273 (622)
T 3g06_A          256 LPM---LPSGLLSLSVYRNQL  273 (622)
T ss_dssp             CCC---CCTTCCEEECCSSCC
T ss_pred             CCc---ccccCcEEeCCCCCC
Confidence            666   557778887765543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.49  E-value=4.8e-14  Score=120.80  Aligned_cols=215  Identities=13%  Similarity=0.060  Sum_probs=137.6

Q ss_pred             CCccEEEeccCCCCccC-hH--HHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcc
Q 022501           33 QNLKSLEIVSDKSDNFS-IG--FLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKL  109 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~-~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  109 (296)
                      ..++.+.+.++....-. ..  .+..+++|++|++++|.+.+..+...+.   ..+++|++|.++++..-...+......
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~~L~~L~Ls~n~i~~~~~~~~~~~  140 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE---ATGLALSSLRLRNVSWATGRSWLAELQ  140 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS---CCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh---ccCCCCCEEEeecccccchhhhhHHHH
Confidence            45788888877654211 11  1224578999999999776654422111   558999999999876433221100011


Q ss_pred             cccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccc--cCCcccccCCCCccEEEEeCccccceeccccccc
Q 022501          110 DSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKN--LVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDV  187 (296)
Q Consensus       110 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  187 (296)
                      ...+++|++|+++++......+..+..+++|++|+++++.....  +........+++|++|++++|.. +.+...... 
T Consensus       141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~-  218 (310)
T 4glp_A          141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAA-  218 (310)
T ss_dssp             TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHH-
T ss_pred             hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHH-
Confidence            34688999999998765444445677889999999998764332  22222346789999999999854 322221000 


Q ss_pred             ccccccCCccceeeccCCcCccee-cCCC-ccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCCcc
Q 022501          188 EEDEIVFSRLKWLSLECLDSLTSF-CSGN-CTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDK  258 (296)
Q Consensus       188 ~~~~~~~~~L~~L~l~~~~~L~~l-~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~~  258 (296)
                        .+..+++|++|+++++. ++.. +... ....+++|++|++++| .++.+|...  .++|+.|+++.+...
T Consensus       219 --l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          219 --LAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSNRLN  285 (310)
T ss_dssp             --HHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSCCCC
T ss_pred             --HHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCCcCC
Confidence              01237899999999875 5655 3211 1112379999999987 577888865  379999999866543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.49  E-value=2e-12  Score=116.57  Aligned_cols=194  Identities=17%  Similarity=0.091  Sum_probs=96.4

Q ss_pred             CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeec--------------CccccccCCccccceeEeccccc
Q 022501           33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSN--------------GEVEKQAGMLTQIKSLKLWELSN   98 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~~~~   98 (296)
                      ++|++|++++|.+..+|  .++++++|++|++++|.+.++...              .+++ ....+++|+.|.++++. 
T Consensus       131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-  206 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-  206 (454)
T ss_dssp             TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-
T ss_pred             CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-
Confidence            46666666666665555  255666666666666655442110              0011 12335555555555542 


Q ss_pred             ccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccc
Q 022501           99 LLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMT  178 (296)
Q Consensus        99 l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~  178 (296)
                      +..++.       ..++|+.|+++++ .+..++ .+..+++|++|+++++. +..++.     .+++|++|++++|.. .
T Consensus       207 l~~l~~-------~~~~L~~L~l~~n-~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~l~~N~l-~  270 (454)
T 1jl5_A          207 LKKLPD-------LPLSLESIVAGNN-ILEELP-ELQNLPFLTTIYADNNL-LKTLPD-----LPPSLEALNVRDNYL-T  270 (454)
T ss_dssp             CSSCCC-------CCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSSCCS-----CCTTCCEEECCSSCC-S
T ss_pred             CCcCCC-------CcCcccEEECcCC-cCCccc-ccCCCCCCCEEECCCCc-CCcccc-----cccccCEEECCCCcc-c
Confidence            222211       1246777777765 344555 35667788888887753 433321     224555555555431 1


Q ss_pred             eeccccc----------ccccccccCC--------------------ccceeeccCCcCcceecCCCccccCCCccEEee
Q 022501          179 EIISSEG----------DVEEDEIVFS--------------------RLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFV  228 (296)
Q Consensus       179 ~~~~~~~----------~~~~~~~~~~--------------------~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l  228 (296)
                      .++....          .........+                    +|++|+++++. ++.++.     .+++|++|++
T Consensus       271 ~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~-l~~lp~-----~~~~L~~L~L  344 (454)
T 1jl5_A          271 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPA-----LPPRLERLIA  344 (454)
T ss_dssp             CCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCC-----CCTTCCEEEC
T ss_pred             ccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCc-cccccc-----cCCcCCEEEC
Confidence            1111000          0000000112                    34444443321 222221     2477888888


Q ss_pred             ccCCccccccCCcccCCCcceEEcccCC
Q 022501          229 IDCPKMMIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       229 ~~c~~l~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      ++| .++.+|.   .+++|+.++++.+.
T Consensus       345 ~~N-~l~~lp~---~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          345 SFN-HLAEVPE---LPQNLKQLHVEYNP  368 (454)
T ss_dssp             CSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred             CCC-ccccccc---hhhhccEEECCCCC
Confidence            776 4666776   46788888887654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.49  E-value=4.1e-13  Score=111.45  Aligned_cols=176  Identities=20%  Similarity=0.168  Sum_probs=92.1

Q ss_pred             CCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccccc
Q 022501           33 QNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSV  112 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  112 (296)
                      .+.+.+++.++....+|..+   .+++++|++++|.+..+.+     .....+++|++|.++++. +..++...   +..
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~   81 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSD-----ATFRGLTKLTWLNLDYNQ-LQTLSAGV---FDD   81 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSC-CCCCCTTT---TTT
T ss_pred             CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCH-----hHhcCcccCCEEECCCCc-CCccCHhH---hcc
Confidence            34566666666666665421   2466666666665554422     112346666666666543 22222211   345


Q ss_pred             CCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceeccccccccccc
Q 022501          113 FQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDE  191 (296)
Q Consensus       113 ~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  191 (296)
                      +++|+.|+++++. +..++. .+..+++|++|+++++ .++.++.. .+..+++|++|++++|. +..++..      .+
T Consensus        82 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~------~~  151 (251)
T 3m19_A           82 LTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSG-VFDRLTKLKELRLNTNQ-LQSIPAG------AF  151 (251)
T ss_dssp             CTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCCCTT------TT
T ss_pred             CCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChh-HhccCCcccEEECcCCc-CCccCHH------Hc
Confidence            6666777766643 333333 3455666677766654 34444322 24556667777766653 3333221      12


Q ss_pred             ccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501          192 IVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP  232 (296)
Q Consensus       192 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~  232 (296)
                      ..+++|+.|+++++. ++.++... +..+++|+.|++.+++
T Consensus       152 ~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          152 DKLTNLQTLSLSTNQ-LQSVPHGA-FDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTCTTCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSCC
T ss_pred             CcCcCCCEEECCCCc-CCccCHHH-HhCCCCCCEEEeeCCc
Confidence            236666777766643 45544322 3456666677666654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.48  E-value=4.5e-15  Score=131.09  Aligned_cols=238  Identities=11%  Similarity=0.025  Sum_probs=152.5

Q ss_pred             cccceEEEeeccCccccccC----CCCCCcCCCccEEEeccCCCCc----cChHH------HhcCCcccEEEEeccccce
Q 022501            6 IANLEELKLSGKDITMICHD----HLPKHLFQNLKSLEIVSDKSDN----FSIGF------LQRFHNVERLKLRNSSYKE   71 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~----~~~~~------~~~l~~L~~L~l~~~~~~~   71 (296)
                      +++|++|+++++.+....+.    .+.  .+++|++|++++|.+..    +|..+      +..+++|++|++++|.+..
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~  108 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIA--SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  108 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTT--TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHH--hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence            68899999999888765332    244  78999999998876553    33332      3688999999999986543


Q ss_pred             EeecCccccccCCccccceeEecccccccccccccCcccccC---------CCccEEEeccCccc-cccc---cCccccC
Q 022501           72 IFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF---------QNLETLEIWWCNNL-INLV---PSSASFE  138 (296)
Q Consensus        72 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~---------~~L~~L~l~~~~~l-~~~~---~~~~~l~  138 (296)
                      .. ...+......+++|++|.++++..-...+......+..+         ++|++|++++|..- ..++   ..+..++
T Consensus       109 ~~-~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          109 TA-QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TT-HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HH-HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            10 001222334588999999998754211000000002223         78999999987543 2333   2445678


Q ss_pred             CccEEEeccCcCccccC---Ccc-cccCCCCccEEEEeCcccc----ceecccccccccccccCCccceeeccCCcCcce
Q 022501          139 NLTTLEVSYCQRLKNLV---SSS-TAKSLVCLMKLRIDGCKLM----TEIISSEGDVEEDEIVFSRLKWLSLECLDSLTS  210 (296)
Q Consensus       139 ~L~~L~l~~c~~l~~~~---~~~-~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~  210 (296)
                      +|++|++++|. +++..   ... .+..+++|++|++++|..-    ..++..       +..+++|++|+++++. ++.
T Consensus       188 ~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-------l~~~~~L~~L~L~~n~-i~~  258 (386)
T 2ca6_A          188 LLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-------LKSWPNLRELGLNDCL-LSA  258 (386)
T ss_dssp             TCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH-------GGGCTTCCEEECTTCC-CCH
T ss_pred             CcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH-------HccCCCcCEEECCCCC-Cch
Confidence            99999999874 44210   001 4567899999999998642    223322       2348899999999875 443


Q ss_pred             ecCC---Ccc--ccCCCccEEeeccCCcccc-----ccCCc-ccCCCcceEEcccCC
Q 022501          211 FCSG---NCT--FKFPSLEDLFVIDCPKMMI-----FSFGV-LSTPRLREVRKNWGL  256 (296)
Q Consensus       211 l~~~---~~~--~~~~~L~~L~l~~c~~l~~-----~~~~~-~~~~~L~~l~l~~~~  256 (296)
                      ....   ..+  ..+++|++|++++|. ++.     +|..+ ..+++|+.|+++.+.
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            3110   011  237899999999985 444     77665 457999999997544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.47  E-value=3.5e-13  Score=107.69  Aligned_cols=152  Identities=17%  Similarity=0.235  Sum_probs=102.9

Q ss_pred             hcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC
Q 022501           54 QRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS  133 (296)
Q Consensus        54 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  133 (296)
                      +.+++|++|++++|.+..+.   +    ...+++|++|.++++ .+..++ .    +..+++|++|+++++......+..
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~---~----l~~l~~L~~L~l~~n-~~~~~~-~----l~~l~~L~~L~l~~n~l~~~~~~~  107 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT---G----IEYAHNIKDLTINNI-HATNYN-P----ISGLSNLERLRIMGKDVTSDKIPN  107 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT---T----GGGCTTCSEEEEESC-CCSCCG-G----GTTCTTCCEEEEECTTCBGGGSCC
T ss_pred             hhcCCccEEeccCCCccChH---H----HhcCCCCCEEEccCC-CCCcch-h----hhcCCCCCEEEeECCccCcccChh
Confidence            56788888888888766442   2    234788888888877 444432 1    566788888888886544445666


Q ss_pred             ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecC
Q 022501          134 SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCS  213 (296)
Q Consensus       134 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~  213 (296)
                      +..+++|++|++++|. +.+..+ ..+..+++|++|++++|..++.++.        +..+++|+.|+++++. +++++ 
T Consensus       108 l~~l~~L~~L~Ls~n~-i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~--------l~~l~~L~~L~l~~n~-i~~~~-  175 (197)
T 4ezg_A          108 LSGLTSLTLLDISHSA-HDDSIL-TKINTLPKVNSIDLSYNGAITDIMP--------LKTLPELKSLNIQFDG-VHDYR-  175 (197)
T ss_dssp             CTTCTTCCEEECCSSB-CBGGGH-HHHTTCSSCCEEECCSCTBCCCCGG--------GGGCSSCCEEECTTBC-CCCCT-
T ss_pred             hcCCCCCCEEEecCCc-cCcHhH-HHHhhCCCCCEEEccCCCCccccHh--------hcCCCCCCEEECCCCC-CcChH-
Confidence            7778888888888764 433211 2456788888888888875555542        2337888888888764 55554 


Q ss_pred             CCccccCCCccEEeeccCC
Q 022501          214 GNCTFKFPSLEDLFVIDCP  232 (296)
Q Consensus       214 ~~~~~~~~~L~~L~l~~c~  232 (296)
                        ....+++|++|++++++
T Consensus       176 --~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          176 --GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             --TGGGCSSCCEEEECBC-
T ss_pred             --HhccCCCCCEEEeeCcc
Confidence              24577888888888754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.45  E-value=3.2e-14  Score=132.31  Aligned_cols=65  Identities=9%  Similarity=0.037  Sum_probs=42.9

Q ss_pred             ccccceEEEeeccCccccccC----CCCCCcCCCccEEEeccCCCCccC----hHHHhcCCcccEEEEeccccce
Q 022501            5 VIANLEELKLSGKDITMICHD----HLPKHLFQNLKSLEIVSDKSDNFS----IGFLQRFHNVERLKLRNSSYKE   71 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~   71 (296)
                      .+++|++|+|+++.+.+.+..    ...  .+++|++|+++++....+.    ...+.++++|++|++.+|.+.+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~--~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQ--HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHH--HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHh--cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            468899999988776543211    122  5788888888777665222    2345677888888888875544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.43  E-value=3.8e-13  Score=108.38  Aligned_cols=166  Identities=13%  Similarity=0.114  Sum_probs=108.0

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK   89 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~   89 (296)
                      +.++.+++.+..++   ..  ..++|++|++++|.+..++...+..+++|++|++.+|.+..+.+     .....+++|+
T Consensus        10 ~~v~c~~~~l~~~p---~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~   79 (208)
T 2o6s_A           10 TTVECYSQGRTSVP---TG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN-----GVFNKLTSLT   79 (208)
T ss_dssp             TEEECCSSCCSSCC---SC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCTTCC
T ss_pred             CEEEecCCCccCCC---CC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh-----hhcCCCCCcC
Confidence            34555555555543   12  45678888888887777777677778888888888886664422     1124477888


Q ss_pred             eeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCCccE
Q 022501           90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMK  168 (296)
Q Consensus        90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  168 (296)
                      +|.++++. +..++...   +..+++|+.|+++++ .+..++.. +..+++|++|+++++ .++.++.. .+..+++|++
T Consensus        80 ~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~  152 (208)
T 2o6s_A           80 YLNLSTNQ-LQSLPNGV---FDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQY  152 (208)
T ss_dssp             EEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCE
T ss_pred             EEECCCCc-CCccCHhH---hcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHH-HhccCCCccE
Confidence            88887753 33433221   456788888888876 45555543 566788888888875 45554432 3567788888


Q ss_pred             EEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501          169 LRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD  206 (296)
Q Consensus       169 L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  206 (296)
                      |++++|+..       +       .+++|+.|+++...
T Consensus       153 L~l~~N~~~-------~-------~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          153 IWLHDNPWD-------C-------TCPGIRYLSEWINK  176 (208)
T ss_dssp             EECCSCCBC-------C-------CTTTTHHHHHHHHH
T ss_pred             EEecCCCee-------c-------CCCCHHHHHHHHHh
Confidence            888887532       1       26778888776543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.43  E-value=2e-14  Score=133.75  Aligned_cols=161  Identities=17%  Similarity=0.107  Sum_probs=86.2

Q ss_pred             ccc-ceEEEeeccC-ccccc-cCCCCCCcCCCccEEEeccCCCCccC----hHHHhcCCcccEEEEeccccceEeecCcc
Q 022501            6 IAN-LEELKLSGKD-ITMIC-HDHLPKHLFQNLKSLEIVSDKSDNFS----IGFLQRFHNVERLKLRNSSYKEIFSNGEV   78 (296)
Q Consensus         6 l~~-L~~L~L~~~~-~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   78 (296)
                      +++ |++|+++++. +.... .....  .+++|++|++++|.+....    ......+++|++|+++++.+..+ ....+
T Consensus       136 ~~~~L~~L~L~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~-~~~~l  212 (592)
T 3ogk_B          136 RADDLETLKLDKCSGFTTDGLLSIVT--HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKI-SPKDL  212 (592)
T ss_dssp             HGGGCCEEEEESCEEEEHHHHHHHHH--HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSC-CHHHH
T ss_pred             ccccCcEEECcCCCCcCHHHHHHHHh--hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCcc-CHHHH
Confidence            555 9999998844 33211 11122  6899999999888654332    23556889999999988865422 11122


Q ss_pred             ccccCCccccceeEecccccccccccc-----------------------cCcccccCCCccEEEeccCccccccccCcc
Q 022501           79 EKQAGMLTQIKSLKLWELSNLLHIWEQ-----------------------CYKLDSVFQNLETLEIWWCNNLINLVPSSA  135 (296)
Q Consensus        79 ~~~~~~~~~L~~L~l~~~~~l~~~~~~-----------------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  135 (296)
                      ......+++|+.|.++++... .++..                       ....+..+++|+.+.+.++ ....++....
T Consensus       213 ~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~  290 (592)
T 3ogk_B          213 ETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFP  290 (592)
T ss_dssp             HHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGG
T ss_pred             HHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHh
Confidence            223344777888877775421 11111                       0001233334444444432 1223333344


Q ss_pred             ccCCccEEEeccCcCccccCCcccccCCCCccEEEEe
Q 022501          136 SFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRID  172 (296)
Q Consensus       136 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~  172 (296)
                      .+++|++|++++|. +++......+..+++|++|++.
T Consensus       291 ~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          291 FAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             GGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred             hcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence            56677777777665 3322211223556666666665

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.43  E-value=5e-13  Score=124.35  Aligned_cols=167  Identities=18%  Similarity=0.231  Sum_probs=108.5

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|+.|+++++.+..++  .+.  .+++|+.|++++|.+..+++  +..+++|+.|++++|.+..+.       ....+
T Consensus        42 L~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-------~l~~l  108 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ--GIQ--YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-------SLKDL  108 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT--TGG--GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-------TSTTC
T ss_pred             CCCCCEEECcCCCCCCCh--HHc--cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-------hhccC
Confidence            677788888777777663  244  67888888888877776664  677888888888887665542       13447


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      ++|+.|.++++. +..++.     +..+++|+.|++++| .+..+ ..+..+++|+.|++++|. +.+..+   +..+++
T Consensus       109 ~~L~~L~Ls~N~-l~~l~~-----l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~  176 (605)
T 1m9s_A          109 KKLKSLSLEHNG-ISDING-----LVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTK  176 (605)
T ss_dssp             TTCCEEECTTSC-CCCCGG-----GGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTT
T ss_pred             CCCCEEEecCCC-CCCCcc-----ccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCc-CCCchh---hccCCC
Confidence            778888887664 333321     556777888888776 34444 345567778888887653 444432   566777


Q ss_pred             ccEEEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501          166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD  206 (296)
Q Consensus       166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  206 (296)
                      |+.|++++|. +..+..        +..+++|+.|++++++
T Consensus       177 L~~L~Ls~N~-i~~l~~--------l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          177 LQNLYLSKNH-ISDLRA--------LAGLKNLDVLELFSQE  208 (605)
T ss_dssp             CCEEECCSSC-CCBCGG--------GTTCTTCSEEECCSEE
T ss_pred             CCEEECcCCC-CCCChH--------HccCCCCCEEEccCCc
Confidence            8888887764 333321        3337777777777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.41  E-value=2.2e-14  Score=125.66  Aligned_cols=243  Identities=14%  Similarity=0.019  Sum_probs=153.2

Q ss_pred             cccceEEEeeccCcccccc----CCCCCCcCC-CccEEEeccCCCCccChHHHhcC-----CcccEEEEeccccceEeec
Q 022501            6 IANLEELKLSGKDITMICH----DHLPKHLFQ-NLKSLEIVSDKSDNFSIGFLQRF-----HNVERLKLRNSSYKEIFSN   75 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~----~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~   75 (296)
                      .++|++|+++++.+.+...    ..+.  .++ +|++|++++|.+.......+..+     ++|++|++++|.+....+.
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~--~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFA--NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHH--TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHH--hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            3459999999999888754    3344  677 89999999998887766566654     9999999999977654221


Q ss_pred             CccccccCCc-cccceeEecccccccccccccC-ccccc-CCCccEEEeccCcccc----ccccCccccC-CccEEEecc
Q 022501           76 GEVEKQAGML-TQIKSLKLWELSNLLHIWEQCY-KLDSV-FQNLETLEIWWCNNLI----NLVPSSASFE-NLTTLEVSY  147 (296)
Q Consensus        76 ~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~-~~~~~-~~~L~~L~l~~~~~l~----~~~~~~~~l~-~L~~L~l~~  147 (296)
                       .+......+ ++|++|+++++. +...+.... ..+.. .++|++|++++|..-.    .++..+..++ +|++|++++
T Consensus        99 -~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A           99 -ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             -HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             -HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence             111112224 799999999876 333222110 00222 3589999999874331    2222333344 899999998


Q ss_pred             CcCccccCCcc---cccCC-CCccEEEEeCccccceeccccccccccccc-CCccceeeccCCcCcceecC---CCcccc
Q 022501          148 CQRLKNLVSSS---TAKSL-VCLMKLRIDGCKLMTEIISSEGDVEEDEIV-FSRLKWLSLECLDSLTSFCS---GNCTFK  219 (296)
Q Consensus       148 c~~l~~~~~~~---~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~L~~l~~---~~~~~~  219 (296)
                      |. +++.....   .+... ++|++|++++|..-..-....   ...+.. .++|++|+++++. +.+...   ......
T Consensus       177 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l---~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~  251 (362)
T 3goz_A          177 NN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAEL---AYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDS  251 (362)
T ss_dssp             SC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHH---HHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTT
T ss_pred             CC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHH---HHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhc
Confidence            74 54433211   23344 599999999986322110000   001112 3599999999874 555322   112346


Q ss_pred             CCCccEEeeccCC-------ccccccCCcccCCCcceEEcccCCc
Q 022501          220 FPSLEDLFVIDCP-------KMMIFSFGVLSTPRLREVRKNWGLD  257 (296)
Q Consensus       220 ~~~L~~L~l~~c~-------~l~~~~~~~~~~~~L~~l~l~~~~~  257 (296)
                      +++|+.|++++|.       .+..++.....+++|++++++.+..
T Consensus       252 l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          252 LKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             TTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             CCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            7899999999985       1333455556778899999976543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.40  E-value=2.4e-13  Score=126.44  Aligned_cols=192  Identities=14%  Similarity=0.138  Sum_probs=142.5

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ   87 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   87 (296)
                      ++..+.+..+.+.++..  ..  .+++|+.|++++|.+..++  .+..+++|++|++++|.+..+.+       ...+++
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~--~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~   88 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QN--ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-------LTNLKN   88 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HH--HHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-------GGGCTT
T ss_pred             HHHHHhccCCCcccccc--hh--cCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-------hccCCC
Confidence            34444455555555421  22  7899999999999988887  47889999999999998877654       345999


Q ss_pred             cceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCcc
Q 022501           88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLM  167 (296)
Q Consensus        88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  167 (296)
                      |+.|.++++. +..++ .    +..+++|+.|++++|. +..++ .+..+++|+.|++++|. +..+   ..+..+++|+
T Consensus        89 L~~L~Ls~N~-l~~l~-~----l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~  156 (605)
T 1m9s_A           89 LGWLFLDENK-IKDLS-S----LKDLKKLKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLD  156 (605)
T ss_dssp             CCEEECCSSC-CCCCT-T----STTCTTCCEEECTTSC-CCCCG-GGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCS
T ss_pred             CCEEECcCCC-CCCCh-h----hccCCCCCEEEecCCC-CCCCc-cccCCCccCEEECCCCc-cCCc---hhhcccCCCC
Confidence            9999999874 44443 2    7788999999999874 44443 46778999999999864 5554   3568899999


Q ss_pred             EEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc
Q 022501          168 KLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS  238 (296)
Q Consensus       168 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~  238 (296)
                      .|++++|.. ..+..        +..+++|+.|+++++. +.+++   .+..+++|+.|++++|+ +...|
T Consensus       157 ~L~Ls~N~l-~~~~~--------l~~l~~L~~L~Ls~N~-i~~l~---~l~~l~~L~~L~L~~N~-l~~~p  213 (605)
T 1m9s_A          157 TLSLEDNQI-SDIVP--------LAGLTKLQNLYLSKNH-ISDLR---ALAGLKNLDVLELFSQE-CLNKP  213 (605)
T ss_dssp             EEECCSSCC-CCCGG--------GTTCTTCCEEECCSSC-CCBCG---GGTTCTTCSEEECCSEE-EECCC
T ss_pred             EEECcCCcC-CCchh--------hccCCCCCEEECcCCC-CCCCh---HHccCCCCCEEEccCCc-CcCCc
Confidence            999999853 33322        2348999999999974 66663   25688999999999985 44443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.39  E-value=1.7e-14  Score=134.22  Aligned_cols=164  Identities=16%  Similarity=0.202  Sum_probs=94.7

Q ss_pred             ccccceEEEeec-cCcccccc--CCCC----------CCcCCCccEEEeccCCCCccChHHH-hcCCcccEEEEeccccc
Q 022501            5 VIANLEELKLSG-KDITMICH--DHLP----------KHLFQNLKSLEIVSDKSDNFSIGFL-QRFHNVERLKLRNSSYK   70 (296)
Q Consensus         5 ~l~~L~~L~L~~-~~~~~~~~--~~~~----------~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~   70 (296)
                      .|++|++|++++ ..+.+...  ...+          ...+++|++|++++|.........+ ..+++|++|++.+|.  
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~--  141 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE--  141 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE--
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC--
Confidence            488999999998 33443311  0000          0257899999998887653333333 478999999999882  


Q ss_pred             eEeecCccccccCCccccceeEecccccccccccccC-cccccCCCccEEEeccCc-ccc--ccccCccccCCccEEEec
Q 022501           71 EIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCY-KLDSVFQNLETLEIWWCN-NLI--NLVPSSASFENLTTLEVS  146 (296)
Q Consensus        71 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~~~L~~L~l~~~~-~l~--~~~~~~~~l~~L~~L~l~  146 (296)
                      .+ ...++......+++|++|++++|. +........ .....+++|++|++++|. .+.  .+......+++|++|+++
T Consensus       142 ~~-~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          142 GF-STDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             EE-EHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             CC-CHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence            22 111222333458889999988876 322111111 012356788888888775 111  111122346788888888


Q ss_pred             cCcCccccCCcccccCCCCccEEEEeCc
Q 022501          147 YCQRLKNLVSSSTAKSLVCLMKLRIDGC  174 (296)
Q Consensus       147 ~c~~l~~~~~~~~~~~l~~L~~L~l~~~  174 (296)
                      +|..+..++  ..+..+++|++|.+..+
T Consensus       220 ~~~~~~~l~--~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          220 RAVPLEKLA--TLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             TTSCHHHHH--HHHHHCTTCSEEECSBC
T ss_pred             CCCcHHHHH--HHHhcCCcceEcccccc
Confidence            775555432  23456667777765433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.39  E-value=3.4e-12  Score=102.75  Aligned_cols=175  Identities=16%  Similarity=0.086  Sum_probs=82.1

Q ss_pred             EEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCc
Q 022501           37 SLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNL  116 (296)
Q Consensus        37 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L  116 (296)
                      .++.+++....+|..   -.++|++|+++++.+..+.+     .....+++|++|.++++ .+..++...   +..+++|
T Consensus        11 ~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~---~~~l~~L   78 (208)
T 2o6s_A           11 TVECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPN-----GVFDELTSLTQLYLGGN-KLQSLPNGV---FNKLTSL   78 (208)
T ss_dssp             EEECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSS-CCCCCCTTT---TTTCTTC
T ss_pred             EEEecCCCccCCCCC---CCCCCcEEEcCCCccCcCCh-----hhhcccccCcEEECCCC-ccCccChhh---cCCCCCc
Confidence            444444444444431   23456666666665543321     11133566666666653 233332211   3445566


Q ss_pred             cEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCC
Q 022501          117 ETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFS  195 (296)
Q Consensus       117 ~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  195 (296)
                      ++|+++++ .+..++.. +..+++|++|+++++ .+..++.. .+..+++|++|++++|. +..++..      .+..++
T Consensus        79 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~~~~------~~~~l~  148 (208)
T 2o6s_A           79 TYLNLSTN-QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDG-VFDKLTQLKDLRLYQNQ-LKSVPDG------VFDRLT  148 (208)
T ss_dssp             CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTT------TTTTCT
T ss_pred             CEEECCCC-cCCccCHhHhcCccCCCEEEcCCC-cCcccCHh-HhccCCcCCEEECCCCc-cceeCHH------HhccCC
Confidence            66666654 23333332 345566666666553 34333321 23455666666666653 2222221      122255


Q ss_pred             ccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501          196 RLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL  242 (296)
Q Consensus       196 ~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  242 (296)
                      +|++|++++.+-         ...+++|+.|.++.+..-..+|..++
T Consensus       149 ~L~~L~l~~N~~---------~~~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          149 SLQYIWLHDNPW---------DCTCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             TCCEEECCSCCB---------CCCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             CccEEEecCCCe---------ecCCCCHHHHHHHHHhCCceeeccCc
Confidence            666666665431         12345566666655444444554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.39  E-value=2.5e-12  Score=109.09  Aligned_cols=147  Identities=24%  Similarity=0.261  Sum_probs=116.5

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|++++|+++++.+  +.  .+++|+.|++++|.+..++.  +..+++|++|++++|.+..+..       ...
T Consensus        66 ~l~~L~~L~L~~n~l~~~~~--l~--~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~i~~~~~-------l~~  132 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDIKP--LA--NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING-------LVH  132 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCCGG-------GGG
T ss_pred             cCCCCCEEEccCCccCCCcc--cc--cCCCCCEEECCCCcCCCChh--hccCCCCCEEECCCCcCCCChh-------hcC
Confidence            37899999999999998854  55  89999999999999888763  7899999999999998776522       344


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      +++|+.|.++++. +..++ .    +..+++|+.|++++| .+..+++ +..+++|+.|+++++ .+++++   .+..++
T Consensus       133 l~~L~~L~l~~n~-l~~~~-~----l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~---~l~~l~  200 (291)
T 1h6t_A          133 LPQLESLYLGNNK-ITDIT-V----LSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR---ALAGLK  200 (291)
T ss_dssp             CTTCCEEECCSSC-CCCCG-G----GGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG---GGTTCT
T ss_pred             CCCCCEEEccCCc-CCcch-h----hccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCCh---hhccCC
Confidence            8999999999864 33432 2    677889999999987 4555554 677899999999876 466553   367889


Q ss_pred             CccEEEEeCccc
Q 022501          165 CLMKLRIDGCKL  176 (296)
Q Consensus       165 ~L~~L~l~~~~~  176 (296)
                      +|+.|++++|+.
T Consensus       201 ~L~~L~l~~n~i  212 (291)
T 1h6t_A          201 NLDVLELFSQEC  212 (291)
T ss_dssp             TCSEEEEEEEEE
T ss_pred             CCCEEECcCCcc
Confidence            999999998764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.38  E-value=1.1e-14  Score=135.33  Aligned_cols=91  Identities=23%  Similarity=0.244  Sum_probs=58.6

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-c-cChHHHhcCCcccEEEEeccccceEeecCcccccc
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-N-FSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQA   82 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   82 (296)
                      .+++|++|+++++.+.+.....+.. .+++|++|++.+|... . .....+.++++|++|++.+|.+.... ...+....
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~-~~~l~~~~  180 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS-GHWLSHFP  180 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCC-GGGGGGSC
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcc-hHHHHHHh
Confidence            4789999999997776653333321 5889999999888433 2 12345568999999999988543321 12223333


Q ss_pred             CCccccceeEecccc
Q 022501           83 GMLTQIKSLKLWELS   97 (296)
Q Consensus        83 ~~~~~L~~L~l~~~~   97 (296)
                      ..+++|++|+++++.
T Consensus       181 ~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          181 DTYTSLVSLNISCLA  195 (594)
T ss_dssp             TTCCCCCEEECTTCC
T ss_pred             hcCCcCcEEEecccC
Confidence            456677777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.35  E-value=4.3e-12  Score=106.05  Aligned_cols=165  Identities=18%  Similarity=0.216  Sum_probs=88.5

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +.++..+.++++.++++.  .+.  .+++|+.|++++|.+..++  .+..+++|++|++++|.+.++.+       ...+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~--~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-------l~~l   84 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQK--ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-------LKDL   84 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHH--HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-------GTTC
T ss_pred             HHHHHHHHhcCCCccccc--chh--hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-------hccC
Confidence            344555555555555543  233  5666666666666665555  35566666666666665554433       2336


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      ++|+.|.++++. +..++.     ... ++|+.|+++++ .+..++ .+..+++|+.|+++++ .++++.   .+..+++
T Consensus        85 ~~L~~L~L~~N~-l~~l~~-----~~~-~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~  151 (263)
T 1xeu_A           85 TKLEELSVNRNR-LKNLNG-----IPS-ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNN-KLKSIV---MLGFLSK  151 (263)
T ss_dssp             SSCCEEECCSSC-CSCCTT-----CCC-SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTS-CCCBCG---GGGGCTT
T ss_pred             CCCCEEECCCCc-cCCcCc-----ccc-CcccEEEccCC-ccCCCh-hhcCcccccEEECCCC-cCCCCh---HHccCCC
Confidence            666666666543 233322     112 56666666665 333333 3455666666666654 344432   3455666


Q ss_pred             ccEEEEeCccccceecccccccccccccCCccceeeccCC
Q 022501          166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECL  205 (296)
Q Consensus       166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  205 (296)
                      |++|++++|.. ..+ .       .+..+++|+.|++++.
T Consensus       152 L~~L~L~~N~i-~~~-~-------~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          152 LEVLDLHGNEI-TNT-G-------GLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CCEEECTTSCC-CBC-T-------TSTTCCCCCEEEEEEE
T ss_pred             CCEEECCCCcC-cch-H-------HhccCCCCCEEeCCCC
Confidence            66666666542 222 1       1233666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.35  E-value=2e-14  Score=129.63  Aligned_cols=15  Identities=13%  Similarity=0.297  Sum_probs=7.4

Q ss_pred             cccceEEEeeccCcc
Q 022501            6 IANLEELKLSGKDIT   20 (296)
Q Consensus         6 l~~L~~L~L~~~~~~   20 (296)
                      +++|++|+++++++.
T Consensus        27 ~~~L~~L~L~~~~l~   41 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLT   41 (461)
T ss_dssp             HTTCSEEEEESSCCC
T ss_pred             cCCccEEEccCCCCC
Confidence            445555555554444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.34  E-value=1.9e-14  Score=129.75  Aligned_cols=241  Identities=16%  Similarity=0.081  Sum_probs=117.7

Q ss_pred             ccccceEEEeeccCccccccCCCCC---CcCCCccEEEeccCCCCccC----hHHHhcCCcccEEEEeccccceEeecCc
Q 022501            5 VIANLEELKLSGKDITMICHDHLPK---HLFQNLKSLEIVSDKSDNFS----IGFLQRFHNVERLKLRNSSYKEIFSNGE   77 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~   77 (296)
                      .+++|++|+++++.+.+.....+..   ...++|++|++++|.+....    ...+..+++|++|++++|.+..... ..
T Consensus       111 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-~~  189 (461)
T 1z7x_W          111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV-RV  189 (461)
T ss_dssp             SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH-HH
T ss_pred             cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH-HH
Confidence            3678999999988776543222210   13567888888888776433    2345667888888888875433211 00


Q ss_pred             ccc-ccCCccccceeEecccccccc----cccccCcccccCCCccEEEeccCc---------------------------
Q 022501           78 VEK-QAGMLTQIKSLKLWELSNLLH----IWEQCYKLDSVFQNLETLEIWWCN---------------------------  125 (296)
Q Consensus        78 ~~~-~~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~~~~~~L~~L~l~~~~---------------------------  125 (296)
                      +.. .....++|++|.++++..-..    ++..    +..+++|++|+++++.                           
T Consensus       190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~----l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~  265 (461)
T 1z7x_W          190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGI----VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE  265 (461)
T ss_dssp             HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHH----HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHH----HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence            000 001133566666655422110    1111    2233444444444432                           


Q ss_pred             -cccc-----cccCccccCCccEEEeccCcCccccCCcc----cccCCCCccEEEEeCccccceecccccccccccccCC
Q 022501          126 -NLIN-----LVPSSASFENLTTLEVSYCQRLKNLVSSS----TAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFS  195 (296)
Q Consensus       126 -~l~~-----~~~~~~~l~~L~~L~l~~c~~l~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~  195 (296)
                       .++.     ++..+..+++|++|+++++. +.+.....    .....++|++|++++|........   .....+..++
T Consensus       266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~---~l~~~l~~~~  341 (461)
T 1z7x_W          266 CGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS---HFSSVLAQNR  341 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH---HHHHHHHHCS
T ss_pred             CCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH---HHHHHHhhCC
Confidence             2222     22223334455555555432 22111000    011224555555555542111000   0001122357


Q ss_pred             ccceeeccCCcCcceecCCCcc----ccCCCccEEeeccCCccc-----cccCCcccCCCcceEEcccCC
Q 022501          196 RLKWLSLECLDSLTSFCSGNCT----FKFPSLEDLFVIDCPKMM-----IFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       196 ~L~~L~l~~~~~L~~l~~~~~~----~~~~~L~~L~l~~c~~l~-----~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      +|++|+++++. +.+.......    ...++|++|++++|. ++     .+|..+..+++|++++++.+.
T Consensus       342 ~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          342 FLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             SCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            77777777763 4432211100    125688888888874 44     566666677888888887543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.33  E-value=6.1e-12  Score=102.92  Aligned_cols=151  Identities=17%  Similarity=0.130  Sum_probs=108.1

Q ss_pred             ceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcccc
Q 022501            9 LEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQI   88 (296)
Q Consensus         9 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L   88 (296)
                      -+.++.+++++..++ .  .  ..++|+.|++++|.+..+++..+..+++|++|++++|.+..+.+     .....+++|
T Consensus        21 ~~~v~c~~~~l~~ip-~--~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~-----~~~~~l~~L   90 (229)
T 3e6j_A           21 GTTVDCRSKRHASVP-A--G--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV-----GVFDSLTQL   90 (229)
T ss_dssp             TTEEECTTSCCSSCC-S--C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTC
T ss_pred             CCEeEccCCCcCccC-C--C--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh-----hhcccCCCc
Confidence            345677667776663 2  2  34788888888888887766677888888999888887755432     112458888


Q ss_pred             ceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccE
Q 022501           89 KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMK  168 (296)
Q Consensus        89 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  168 (296)
                      +.|.++++ .+..++...   +..+++|+.|+++++ .+..+|..+..+++|++|+++++ .+..++. ..+..+++|+.
T Consensus        91 ~~L~Ls~N-~l~~l~~~~---~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~  163 (229)
T 3e6j_A           91 TVLDLGTN-QLTVLPSAV---FDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTH  163 (229)
T ss_dssp             CEEECCSS-CCCCCCTTT---TTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCE
T ss_pred             CEEECCCC-cCCccChhH---hCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCE
Confidence            88888876 344443321   456888999999885 56678777788899999999875 5665544 24677889999


Q ss_pred             EEEeCccc
Q 022501          169 LRIDGCKL  176 (296)
Q Consensus       169 L~l~~~~~  176 (296)
                      |++.+++.
T Consensus       164 L~l~~N~~  171 (229)
T 3e6j_A          164 AYLFGNPW  171 (229)
T ss_dssp             EECTTSCB
T ss_pred             EEeeCCCc
Confidence            99988764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.33  E-value=6.6e-12  Score=102.07  Aligned_cols=151  Identities=15%  Similarity=0.176  Sum_probs=107.8

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK   89 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~   89 (296)
                      +.+++++++++.++ ..    ..++|+.|++++|.+..++...+..+++|++|++++|.+..+.+     .....+++|+
T Consensus        14 ~~v~c~~~~l~~iP-~~----l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-----~~~~~l~~L~   83 (220)
T 2v9t_B           14 NIVDCRGKGLTEIP-TN----LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-----DAFQGLRSLN   83 (220)
T ss_dssp             TEEECTTSCCSSCC-SS----CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-----TTTTTCSSCC
T ss_pred             CEEEcCCCCcCcCC-Cc----cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-----HHhhCCcCCC
Confidence            45677777777763 22    23688999998888888887778888999999999888776633     1224588899


Q ss_pred             eeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEE
Q 022501           90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKL  169 (296)
Q Consensus        90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L  169 (296)
                      +|.++++. +..++...   +..+++|+.|+++++......+..+..+++|++|+++++ .++.++.. .+..+++|++|
T Consensus        84 ~L~Ls~N~-l~~l~~~~---f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L  157 (220)
T 2v9t_B           84 SLVLYGNK-ITELPKSL---FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKG-TFSPLRAIQTM  157 (220)
T ss_dssp             EEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEE
T ss_pred             EEECCCCc-CCccCHhH---ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHH-HHhCCCCCCEE
Confidence            99988753 44554332   456888999999886433333445677899999999875 45555432 46778899999


Q ss_pred             EEeCccc
Q 022501          170 RIDGCKL  176 (296)
Q Consensus       170 ~l~~~~~  176 (296)
                      ++++++.
T Consensus       158 ~L~~N~~  164 (220)
T 2v9t_B          158 HLAQNPF  164 (220)
T ss_dssp             ECCSSCE
T ss_pred             EeCCCCc
Confidence            9998764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.31  E-value=2.3e-11  Score=98.83  Aligned_cols=151  Identities=11%  Similarity=0.120  Sum_probs=99.2

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCcc-ChHHHhcCCcccEEEEeccccceEeecCccccccCCcccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNF-SIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQI   88 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L   88 (296)
                      ++++++++.++.++ ..    ..+.++.|++++|.+..+ +...+..+++|++|++++|.+..+.+.     ....+++|
T Consensus        14 ~~l~~s~n~l~~iP-~~----~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~-----~~~~l~~L   83 (220)
T 2v70_A           14 TTVDCSNQKLNKIP-EH----IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG-----AFEGASGV   83 (220)
T ss_dssp             TEEECCSSCCSSCC-SC----CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT-----TTTTCTTC
T ss_pred             CEeEeCCCCcccCc-cC----CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH-----HhCCCCCC
Confidence            57888888887763 22    345678899988888866 445678888999999988877766431     22447788


Q ss_pred             ceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccE
Q 022501           89 KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMK  168 (296)
Q Consensus        89 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~  168 (296)
                      ++|.++++.. ..++...   +..+++|++|+++++......+..+..+++|+.|+++++ .++.+.+. .+..+++|++
T Consensus        84 ~~L~Ls~N~l-~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~  157 (220)
T 2v70_A           84 NEILLTSNRL-ENVQHKM---FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPG-AFDTLHSLST  157 (220)
T ss_dssp             CEEECCSSCC-CCCCGGG---GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTT-TTTTCTTCCE
T ss_pred             CEEECCCCcc-CccCHhH---hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHH-HhcCCCCCCE
Confidence            8888877543 3332221   456777888888776433333445666778888888764 45544332 3566777777


Q ss_pred             EEEeCccc
Q 022501          169 LRIDGCKL  176 (296)
Q Consensus       169 L~l~~~~~  176 (296)
                      |++++++.
T Consensus       158 L~L~~N~l  165 (220)
T 2v70_A          158 LNLLANPF  165 (220)
T ss_dssp             EECCSCCE
T ss_pred             EEecCcCC
Confidence            77777653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.30  E-value=2.4e-11  Score=104.86  Aligned_cols=221  Identities=14%  Similarity=0.077  Sum_probs=115.8

Q ss_pred             cccceEEEeeccCcc--------------------ccccCCCCCCc--------CCCccEEEeccCCCCccChHHHhcCC
Q 022501            6 IANLEELKLSGKDIT--------------------MICHDHLPKHL--------FQNLKSLEIVSDKSDNFSIGFLQRFH   57 (296)
Q Consensus         6 l~~L~~L~L~~~~~~--------------------~~~~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~l~   57 (296)
                      +++|++|+|+++++.                    .++...|.  .        +++|+.+++.+ .+..++...|.+|+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~--~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~  124 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFS--NVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCD  124 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTE--EEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhc--ccccccccccCCCcEEECCc-cccchhHHHhhcCc
Confidence            678999999998887                    23333333  5        77777777766 56667777777777


Q ss_pred             cccEEEEeccccceEeecCccccccCCccccceeEecccc---cccccccccCcccccCCCcc-EEEeccCccccc----
Q 022501           58 NVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELS---NLLHIWEQCYKLDSVFQNLE-TLEIWWCNNLIN----  129 (296)
Q Consensus        58 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~----  129 (296)
                      +|++|.+.++.+..+.+ ..+    ..+.++..+......   ....+...   .+..+..|+ .+.+.....+..    
T Consensus       125 ~L~~l~l~~n~i~~i~~-~aF----~~~~~l~~l~~~~~~~~~~~~~i~~~---~f~~~~~L~~~i~~~~~~~l~~~~~~  196 (329)
T 3sb4_A          125 NLKICQIRKKTAPNLLP-EAL----ADSVTAIFIPLGSSDAYRFKNRWEHF---AFIEGEPLETTIQVGAMGKLEDEIMK  196 (329)
T ss_dssp             TCCEEEBCCSSCCEECT-TSS----CTTTCEEEECTTCTHHHHTSTTTTTS---CEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred             ccceEEcCCCCccccch-hhh----cCCCceEEecCcchhhhhcccccccc---ccccccccceeEEecCCCcHHHHHhh
Confidence            88888777776554432 111    113333333322100   00000000   011222333 222221111100    


Q ss_pred             ---------------------cccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccc
Q 022501          130 ---------------------LVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVE  188 (296)
Q Consensus       130 ---------------------~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  188 (296)
                                           .......+++|+.+++.++ .++.++.. .+.++++|+++.+.++  ++.+...     
T Consensus       197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~-aF~~~~~L~~l~l~~n--i~~I~~~-----  267 (329)
T 3sb4_A          197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDF-TFAQKKYLLKIKLPHN--LKTIGQR-----  267 (329)
T ss_dssp             TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTT-TTTTCTTCCEEECCTT--CCEECTT-----
T ss_pred             cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHh-hhhCCCCCCEEECCcc--cceehHH-----
Confidence                                 0000012567777777653 34444433 4566777777777664  4443321     


Q ss_pred             cccccCCccc-eeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-cccCCCcceEE
Q 022501          189 EDEIVFSRLK-WLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-VLSTPRLREVR  251 (296)
Q Consensus       189 ~~~~~~~~L~-~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~  251 (296)
                       ++..+++|+ .+.+.+  +++.+.... +..|++|+.+++.+. .++.++.. +..+++|+.++
T Consensus       268 -aF~~~~~L~~~l~l~~--~l~~I~~~a-F~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          268 -VFSNCGRLAGTLELPA--SVTAIEFGA-FMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             -TTTTCTTCCEEEEECT--TCCEECTTT-TTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             -HhhCChhccEEEEEcc--cceEEchhh-hhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence             344567777 777766  566665544 666777777777553 46566553 34566777665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.29  E-value=2.7e-11  Score=98.43  Aligned_cols=148  Identities=12%  Similarity=0.116  Sum_probs=77.4

Q ss_pred             cEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEeccccccccc-ccccCcccccCC
Q 022501           36 KSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHI-WEQCYKLDSVFQ  114 (296)
Q Consensus        36 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~  114 (296)
                      +.++.+++....+|...   .++|++|++.+|.+..+.+.     ....+++|+.|.++++. +..+ +..    +..++
T Consensus        14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~-----~~~~l~~L~~L~Ls~N~-i~~~~~~~----~~~l~   80 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPG-----AFSPYKKLRRIDLSNNQ-ISELAPDA----FQGLR   80 (220)
T ss_dssp             TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTT-----SSTTCTTCCEEECCSSC-CCEECTTT----TTTCS
T ss_pred             CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHh-----HhhCCCCCCEEECCCCc-CCCcCHHH----hhCCc
Confidence            45555555555555321   24666677766666554321     12336666666666543 2222 222    45566


Q ss_pred             CccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceeccccccccccccc
Q 022501          115 NLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIV  193 (296)
Q Consensus       115 ~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  193 (296)
                      +|+.|+++++ .+..++.. +..+++|+.|+++++ .+..+.+. .+..+++|++|++++|.. ..+...      .+..
T Consensus        81 ~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l-~~~~~~------~~~~  150 (220)
T 2v9t_B           81 SLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNAN-KINCLRVD-AFQDLHNLNLLSLYDNKL-QTIAKG------TFSP  150 (220)
T ss_dssp             SCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCC-SCCCTT------TTTT
T ss_pred             CCCEEECCCC-cCCccCHhHccCCCCCCEEECCCC-CCCEeCHH-HcCCCCCCCEEECCCCcC-CEECHH------HHhC
Confidence            6777777664 34444443 345666777776654 34444322 345566677777666542 222211      1223


Q ss_pred             CCccceeeccCCc
Q 022501          194 FSRLKWLSLECLD  206 (296)
Q Consensus       194 ~~~L~~L~l~~~~  206 (296)
                      +++|+.|++++.+
T Consensus       151 l~~L~~L~L~~N~  163 (220)
T 2v9t_B          151 LRAIQTMHLAQNP  163 (220)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCCCEEEeCCCC
Confidence            6666666666544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.29  E-value=2.5e-12  Score=107.50  Aligned_cols=145  Identities=19%  Similarity=0.222  Sum_probs=95.7

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|++++++++.+.  .+.  .+++|+.|++++|.+..++.  +..+++|++|++++|.+..+...       .. 
T Consensus        40 l~~L~~L~l~~n~i~~l~--~l~--~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~-------~~-  105 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA--GMQ--FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI-------PS-  105 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTC-------CC-
T ss_pred             cCcCcEEECcCCCcccch--HHh--hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcc-------cc-
Confidence            677788888877777653  344  67888888887777776665  67778888888887766554221       11 


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      ++|+.|.++++. +..++ .    +..+++|+.|+++++ .++.++ .+..+++|+.|+++++ .+.+.   ..+..+++
T Consensus       106 ~~L~~L~L~~N~-l~~~~-~----l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~  173 (263)
T 1xeu_A          106 ACLSRLFLDNNE-LRDTD-S----LIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN-EITNT---GGLTRLKK  173 (263)
T ss_dssp             SSCCEEECCSSC-CSBSG-G----GTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTS-CCCBC---TTSTTCCC
T ss_pred             CcccEEEccCCc-cCCCh-h----hcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCC-cCcch---HHhccCCC
Confidence            677788877753 33332 1    556777888888775 355454 4556777888888765 34444   23566777


Q ss_pred             ccEEEEeCccc
Q 022501          166 LMKLRIDGCKL  176 (296)
Q Consensus       166 L~~L~l~~~~~  176 (296)
                      |+.|++++++.
T Consensus       174 L~~L~l~~N~~  184 (263)
T 1xeu_A          174 VNWIDLTGQKC  184 (263)
T ss_dssp             CCEEEEEEEEE
T ss_pred             CCEEeCCCCcc
Confidence            88888877653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.29  E-value=1.5e-11  Score=100.01  Aligned_cols=133  Identities=14%  Similarity=0.162  Sum_probs=105.1

Q ss_pred             cccceEEEeeccCcccccc-CCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            6 IANLEELKLSGKDITMICH-DHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+.+++|++++|+++.+.+ ..+.  .+++|+.|++++|.+..++...+.++++|++|++++|.+..+.+     .....
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~  103 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFK--KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH-----KMFKG  103 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGG--GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG-----GGGTT
T ss_pred             CCCCCEEEcCCCcCCccCchhhhc--cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH-----hHhcC
Confidence            4578999999999998843 3456  89999999999999998888888999999999999998876643     12345


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCcccccc-ccCccccCCccEEEeccCcC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINL-VPSSASFENLTTLEVSYCQR  150 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~c~~  150 (296)
                      +++|++|.++++.. ..+....   +..+++|+.|+++++. +..+ +..+..+++|+.|++++++-
T Consensus       104 l~~L~~L~Ls~N~l-~~~~~~~---~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          104 LESLKTLMLRSNRI-TCVGNDS---FIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CSSCCEEECTTSCC-CCBCTTS---STTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CcCCCEEECCCCcC-CeECHhH---cCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCC
Confidence            89999999998653 3432221   6678999999999964 4444 56677899999999998653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.28  E-value=9.2e-12  Score=108.88  Aligned_cols=130  Identities=18%  Similarity=0.135  Sum_probs=55.8

Q ss_pred             CccEEEeccCCCCccChHHHh-cCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccccc
Q 022501           34 NLKSLEIVSDKSDNFSIGFLQ-RFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSV  112 (296)
Q Consensus        34 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  112 (296)
                      .++.|++++|.+..++...+. .+++|++|++++|.+..+.+.     ....+++|++|.++++. +..++...   +..
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~-----~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~  110 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE-----AFVPVPNLRYLDLSSNH-LHTLDEFL---FSD  110 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTT-----TTTTCTTCCEEECCSSC-CCEECTTT---TTT
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChh-----hccCCCCCCEEECCCCc-CCcCCHHH---hCC
Confidence            455555555555544444443 455555555555544443221     11234555555555432 22222211   334


Q ss_pred             CCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccc---cCCCCccEEEEeCc
Q 022501          113 FQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTA---KSLVCLMKLRIDGC  174 (296)
Q Consensus       113 ~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~---~~l~~L~~L~l~~~  174 (296)
                      +++|+.|+++++......+..+..+++|++|+++++ .+..++.. .+   ..+++|+.|++++|
T Consensus       111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVE-LIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGG-GTC----CTTCCEEECCSS
T ss_pred             CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHH-HhcCcccCCcCCEEECCCC
Confidence            455555555554322222233444555555555543 23333221 11   23455555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.28  E-value=2.6e-11  Score=99.15  Aligned_cols=150  Identities=17%  Similarity=0.096  Sum_probs=77.0

Q ss_pred             CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccC
Q 022501           34 NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF  113 (296)
Q Consensus        34 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  113 (296)
                      .-+.++.+++....+|..   -.++|++|++++|.+.++.+     .....+++|+.|.++++. +..++...   +..+
T Consensus        20 s~~~v~c~~~~l~~ip~~---~~~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~L~~N~-l~~i~~~~---~~~l   87 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAG---IPTNAQILYLHDNQITKLEP-----GVFDSLINLKELYLGSNQ-LGALPVGV---FDSL   87 (229)
T ss_dssp             ETTEEECTTSCCSSCCSC---CCTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSC-CCCCCTTT---TTTC
T ss_pred             eCCEeEccCCCcCccCCC---CCCCCCEEEcCCCccCccCH-----HHhhCccCCcEEECCCCC-CCCcChhh---cccC
Confidence            345566666555555542   22566666666665554422     112336666666666543 33333221   3455


Q ss_pred             CCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccc
Q 022501          114 QNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEI  192 (296)
Q Consensus       114 ~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  192 (296)
                      ++|+.|+++++ .+..++.. +..+++|+.|+++++ .+..++.  .+..+++|++|++++|. +..++..      .+.
T Consensus        88 ~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~--~~~~l~~L~~L~L~~N~-l~~~~~~------~~~  156 (229)
T 3e6j_A           88 TQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCN-KLTELPR--GIERLTHLTHLALDQNQ-LKSIPHG------AFD  156 (229)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCSCCT--TGGGCTTCSEEECCSSC-CCCCCTT------TTT
T ss_pred             CCcCEEECCCC-cCCccChhHhCcchhhCeEeccCC-cccccCc--ccccCCCCCEEECCCCc-CCccCHH------HHh
Confidence            66666666664 34444432 345666666666653 3444432  23556666666666653 3333221      123


Q ss_pred             cCCccceeeccCCc
Q 022501          193 VFSRLKWLSLECLD  206 (296)
Q Consensus       193 ~~~~L~~L~l~~~~  206 (296)
                      .+++|+.|++.+.+
T Consensus       157 ~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          157 RLSSLTHAYLFGNP  170 (229)
T ss_dssp             TCTTCCEEECTTSC
T ss_pred             CCCCCCEEEeeCCC
Confidence            35666666666544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.27  E-value=6.8e-13  Score=117.06  Aligned_cols=218  Identities=17%  Similarity=0.097  Sum_probs=140.3

Q ss_pred             ccccceEEEeeccCccccc---cCCCC-----CCcCCCccEEEeccCCCCc----cChHHHhcCCcccEEEEeccccceE
Q 022501            5 VIANLEELKLSGKDITMIC---HDHLP-----KHLFQNLKSLEIVSDKSDN----FSIGFLQRFHNVERLKLRNSSYKEI   72 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~---~~~~~-----~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~   72 (296)
                      .+++|++|+++++.+..+.   +..+.     ...+++|++|++++|.+..    ..+..+..+++|++|++++|.+...
T Consensus        58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            4789999999986544321   11110     0278999999999998876    2234678899999999999976422


Q ss_pred             eecCccccccCCc---------cccceeEecccccc-cccccccCcccccCCCccEEEeccCcccc-----ccccCcccc
Q 022501           73 FSNGEVEKQAGML---------TQIKSLKLWELSNL-LHIWEQCYKLDSVFQNLETLEIWWCNNLI-----NLVPSSASF  137 (296)
Q Consensus        73 ~~~~~~~~~~~~~---------~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~l  137 (296)
                      .. ..+......+         ++|++|.++++..- ..++.. ...+..+++|++|.+++|..-.     -.+..+..+
T Consensus       138 ~~-~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~  215 (386)
T 2ca6_A          138 AG-AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW-AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC  215 (386)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH-HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC
T ss_pred             HH-HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH-HHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC
Confidence            11 1111111223         89999999987532 122110 0114567899999999984321     122266778


Q ss_pred             CCccEEEeccCcCcc-----ccCCcccccCCCCccEEEEeCccccce----ecccccccccccccCCccceeeccCCcCc
Q 022501          138 ENLTTLEVSYCQRLK-----NLVSSSTAKSLVCLMKLRIDGCKLMTE----IISSEGDVEEDEIVFSRLKWLSLECLDSL  208 (296)
Q Consensus       138 ~~L~~L~l~~c~~l~-----~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~~~~L  208 (296)
                      ++|+.|++++|. ++     .++  ..+..+++|++|++++|.....    ++....     ...+++|+.|+++++. +
T Consensus       216 ~~L~~L~Ls~n~-l~~~g~~~l~--~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~n~-i  286 (386)
T 2ca6_A          216 QELKVLDLQDNT-FTHLGSSALA--IALKSWPNLRELGLNDCLLSARGAAAVVDAFS-----KLENIGLQTLRLQYNE-I  286 (386)
T ss_dssp             TTCCEEECCSSC-CHHHHHHHHH--HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH-----TCSSCCCCEEECCSSC-C
T ss_pred             CCccEEECcCCC-CCcHHHHHHH--HHHccCCCcCEEECCCCCCchhhHHHHHHHHh-----hccCCCeEEEECcCCc-C
Confidence            999999999875 42     222  2457789999999999864321    111100     0127899999999975 4


Q ss_pred             ce-----ecCCCccccCCCccEEeeccCCcc
Q 022501          209 TS-----FCSGNCTFKFPSLEDLFVIDCPKM  234 (296)
Q Consensus       209 ~~-----l~~~~~~~~~~~L~~L~l~~c~~l  234 (296)
                      +.     ++. ....++++|++|++++|+.-
T Consensus       287 ~~~g~~~l~~-~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          287 ELDAVRTLKT-VIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             BHHHHHHHHH-HHHHHCTTCCEEECTTSBSC
T ss_pred             CHHHHHHHHH-HHHhcCCCceEEEccCCcCC
Confidence            54     332 11245899999999998633

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.26  E-value=6e-11  Score=109.40  Aligned_cols=190  Identities=15%  Similarity=0.085  Sum_probs=130.3

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ   87 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   87 (296)
                      +|++|+++++++++++ ..    .+++|+.|++++|.+..+|    ..+++|++|++++|.+..+..   +      ..+
T Consensus        60 ~L~~L~Ls~n~L~~lp-~~----l~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~---l------~~~  121 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLP-DN----LPPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE---L------PAS  121 (571)
T ss_dssp             TCSEEECCSSCCSCCC-SC----CCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---C------CTT
T ss_pred             CccEEEeCCCCCCccC-Hh----HcCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch---h------hcC
Confidence            8899999998888864 22    3578999999999888888    457899999999998776432   1      128


Q ss_pred             cceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCcc
Q 022501           88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLM  167 (296)
Q Consensus        88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  167 (296)
                      |+.|.++++. +..++.       .+++|+.|+++++ .++.++.   .+++|+.|+++++. ++.++.   +.  ++|+
T Consensus       122 L~~L~Ls~N~-l~~lp~-------~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~---l~--~~L~  183 (571)
T 3cvr_A          122 LKHLDVDNNQ-LTMLPE-------LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQ-LTFLPE---LP--ESLE  183 (571)
T ss_dssp             CCEEECCSSC-CSCCCC-------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC---CC--TTCC
T ss_pred             CCEEECCCCc-CCCCCC-------cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCC-CCCcch---hh--CCCC
Confidence            9999998764 344432       4678999999886 4555665   47889999998764 555543   22  8899


Q ss_pred             EEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC
Q 022501          168 KLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG  240 (296)
Q Consensus       168 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~  240 (296)
                      .|++++|. ++.++. ...  ......+.|+.|+++++ .++.++..  ...+++|+.|++++++.-..+|..
T Consensus       184 ~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~--l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          184 ALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPEN--ILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             EEECCSSC-CSSCCC-CC----------CCEEEECCSS-CCCCCCGG--GGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             EEECcCCC-CCchhh-HHH--hhhcccccceEEecCCC-cceecCHH--HhcCCCCCEEEeeCCcCCCcCHHH
Confidence            99999874 444443 110  00111223388999886 46776653  356888999999888655555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.24  E-value=4.7e-13  Score=117.16  Aligned_cols=218  Identities=16%  Similarity=0.037  Sum_probs=134.4

Q ss_pred             cc-cceEEEeeccCccccccCCCCC--Cc-CCCccEEEeccCCCCccChHHH----hcC-CcccEEEEeccccceEeecC
Q 022501            6 IA-NLEELKLSGKDITMICHDHLPK--HL-FQNLKSLEIVSDKSDNFSIGFL----QRF-HNVERLKLRNSSYKEIFSNG   76 (296)
Q Consensus         6 l~-~L~~L~L~~~~~~~~~~~~~~~--~~-l~~L~~L~l~~~~~~~~~~~~~----~~l-~~L~~L~l~~~~~~~~~~~~   76 (296)
                      ++ +|++|++++|.+.+..+..+..  .. +++|++|++++|.+...+...+    ..+ ++|++|++++|.+..... .
T Consensus        49 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~  127 (362)
T 3goz_A           49 TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-S  127 (362)
T ss_dssp             CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-H
T ss_pred             CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-H
Confidence            55 8999999999988765444441  01 3999999999999886665533    344 899999999997755422 1


Q ss_pred             ccccccCC-ccccceeEeccccccccccccc-CcccccCC-CccEEEeccCcccccccc-----Ccccc-CCccEEEecc
Q 022501           77 EVEKQAGM-LTQIKSLKLWELSNLLHIWEQC-YKLDSVFQ-NLETLEIWWCNNLINLVP-----SSASF-ENLTTLEVSY  147 (296)
Q Consensus        77 ~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~-~L~~L~l~~~~~l~~~~~-----~~~~l-~~L~~L~l~~  147 (296)
                      .+...... .++|++|+++++.- ....... ...+..++ +|++|++++|. ++....     .+..+ ++|++|++++
T Consensus       128 ~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~  205 (362)
T 3goz_A          128 EFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSA  205 (362)
T ss_dssp             HHHHHHTTSCTTCCEEECTTSCG-GGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHHhCCCceeEEEccCCcC-CHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCC
Confidence            11111222 36999999998743 2111100 00123344 89999999974 433322     22334 5999999998


Q ss_pred             CcCccccCCc---ccccC-CCCccEEEEeCccccceecccccccccccccCCccceeeccCCc--C-----cceecCCCc
Q 022501          148 CQRLKNLVSS---STAKS-LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD--S-----LTSFCSGNC  216 (296)
Q Consensus       148 c~~l~~~~~~---~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~-----L~~l~~~~~  216 (296)
                      |. +++....   ..+.. .++|++|++++|..-.......   ......+++|++|+++++.  .     +..+..  .
T Consensus       206 N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l---~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~--~  279 (362)
T 3goz_A          206 NL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL---KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA--A  279 (362)
T ss_dssp             SC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH---HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT--T
T ss_pred             CC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH---HHHHhcCCCccEEEeccCCccccCHHHHHHHHH--H
Confidence            75 5542111   11222 4689999999985322111000   0123447899999999875  1     222222  2


Q ss_pred             cccCCCccEEeeccCC
Q 022501          217 TFKFPSLEDLFVIDCP  232 (296)
Q Consensus       217 ~~~~~~L~~L~l~~c~  232 (296)
                      ...+++|+.|++++++
T Consensus       280 ~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          280 FPNIQKIILVDKNGKE  295 (362)
T ss_dssp             STTCCEEEEECTTSCB
T ss_pred             hccCCceEEEecCCCc
Confidence            3467889999998875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.24  E-value=4.6e-11  Score=104.44  Aligned_cols=159  Identities=16%  Similarity=0.133  Sum_probs=118.9

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .+.++.|+|++|+++.+.+..+.. .+++|+.|++++|.+..++...+..+++|++|++++|.+..+.+.     ....+
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~~~~-~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l  111 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEWTPT-RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF-----LFSDL  111 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTSSSS-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-----TTTTC
T ss_pred             CCCCCEEECCCCCCCccChhhhhh-cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH-----HhCCC
Confidence            456899999999999986555431 689999999999999988887889999999999999988776431     22458


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCc----cccCCccEEEeccCcCccccCCccccc
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSS----ASFENLTTLEVSYCQRLKNLVSSSTAK  161 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~l~~L~~L~l~~c~~l~~~~~~~~~~  161 (296)
                      ++|+.|.++++.. ..+....   +..+++|+.|+++++ .+..++...    ..+++|+.|+++++ .+..++.. .+.
T Consensus       112 ~~L~~L~L~~N~i-~~~~~~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~  184 (361)
T 2xot_A          112 QALEVLLLYNNHI-VVVDRNA---FEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT-DLQ  184 (361)
T ss_dssp             TTCCEEECCSSCC-CEECTTT---TTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-HHH
T ss_pred             cCCCEEECCCCcc-cEECHHH---hCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-Hhh
Confidence            9999999998653 3432221   677899999999986 566666543    46899999999975 46655432 345


Q ss_pred             CCCC--ccEEEEeCcccc
Q 022501          162 SLVC--LMKLRIDGCKLM  177 (296)
Q Consensus       162 ~l~~--L~~L~l~~~~~~  177 (296)
                      .++.  ++.|++.+++..
T Consensus       185 ~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          185 KLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             HSCHHHHTTEECCSSCEE
T ss_pred             hccHhhcceEEecCCCcc
Confidence            5665  488999887643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.24  E-value=1.1e-10  Score=107.73  Aligned_cols=176  Identities=13%  Similarity=0.002  Sum_probs=133.0

Q ss_pred             CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccC
Q 022501           34 NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF  113 (296)
Q Consensus        34 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  113 (296)
                      +|+.|++++|.+..+|..+   +++|++|++++|.+..+.         ..+++|+.|.++++. +..++.     +.  
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---------~~l~~L~~L~Ls~N~-l~~ip~-----l~--  119 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---------ELPASLEYLDACDNR-LSTLPE-----LP--  119 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---------CCCTTCCEEECCSSC-CSCCCC-----CC--
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---------cccCCCCEEEccCCC-CCCcch-----hh--
Confidence            8999999999888888643   488999999999887542         237899999999873 444543     11  


Q ss_pred             CCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceeccccccccccccc
Q 022501          114 QNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIV  193 (296)
Q Consensus       114 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  193 (296)
                      .+|+.|+++++ .+..+|.   .+++|+.|+++++. ++.++.     .+++|++|++++|. ++.++.   -       
T Consensus       120 ~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N~-L~~lp~---l-------  178 (571)
T 3cvr_A          120 ASLKHLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLPE-----LPTSLEVLSVRNNQ-LTFLPE---L-------  178 (571)
T ss_dssp             TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSCCCC---C-------
T ss_pred             cCCCEEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCCC-----cCCCcCEEECCCCC-CCCcch---h-------
Confidence            28999999986 5566766   58999999999864 555542     57899999999986 333333   1       


Q ss_pred             CCccceeeccCCcCcceecCCCccccCCCc-------cEEeeccCCccccccCCcccCCCcceEEcccCCc
Q 022501          194 FSRLKWLSLECLDSLTSFCSGNCTFKFPSL-------EDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLD  257 (296)
Q Consensus       194 ~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L-------~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~  257 (296)
                      .++|+.|+++++ +++.++. .  .  .+|       +.|++++| .++.+|..+..+++|+.|+++.+..
T Consensus       179 ~~~L~~L~Ls~N-~L~~lp~-~--~--~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          179 PESLEALDVSTN-LLESLPA-V--P--VRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             CTTCCEEECCSS-CCSSCCC-C--C----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             hCCCCEEECcCC-CCCchhh-H--H--HhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence            279999999987 4676655 1  1  256       99999997 6888999888899999999986543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.21  E-value=1.7e-11  Score=95.22  Aligned_cols=132  Identities=22%  Similarity=0.171  Sum_probs=80.8

Q ss_pred             cCCCccEEEeccCCCC--ccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCc
Q 022501           31 LFQNLKSLEIVSDKSD--NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYK  108 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  108 (296)
                      ..++|+.|++++|.+.  .+|. .+..+++|++|++.+|.+..+       .....+++|++|.++++.....++..   
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~---   90 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV-------SNLPKLPKLKKLELSENRIFGGLDML---   90 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC-------SSCCCCSSCCEEEEESCCCCSCCCHH---
T ss_pred             CcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh-------hhhccCCCCCEEECcCCcCchHHHHH---
Confidence            3466777777666665  5553 345667777777777755544       12234667777777765432223222   


Q ss_pred             ccccCCCccEEEeccCccccccc--cCccccCCccEEEeccCcCccccCC--cccccCCCCccEEEEeCccc
Q 022501          109 LDSVFQNLETLEIWWCNNLINLV--PSSASFENLTTLEVSYCQRLKNLVS--SSTAKSLVCLMKLRIDGCKL  176 (296)
Q Consensus       109 ~~~~~~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~~~~~  176 (296)
                       ...+++|+.|+++++ .+..++  ..+..+++|+.|+++++. ++..+.  ...+..+++|++|++.+|..
T Consensus        91 -~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           91 -AEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             -HHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             -HhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence             344777888888776 455544  455667888888888763 444443  11456788888888888753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.17  E-value=1.5e-13  Score=127.13  Aligned_cols=203  Identities=16%  Similarity=0.078  Sum_probs=130.9

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEecccc-ceEe-------ecCccccccCCccccceeEeccccccccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSY-KEIF-------SNGEVEKQAGMLTQIKSLKLWELSNLLHI  102 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  102 (296)
                      .+++|+.|++++|.+..+|. .++++++|++|++.++.. ....       .....+...+.+++|+.|.......+..+
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~-~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             cCccceeccCChhhHHhhHH-HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            57888889998888777764 567888888888755420 0000       01112223345677777762111111111


Q ss_pred             c---cccCcccc--cCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcccc
Q 022501          103 W---EQCYKLDS--VFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLM  177 (296)
Q Consensus       103 ~---~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~  177 (296)
                      .   ..... +.  ....|+.|+++++ .+..+|. +..+++|+.|+++++ .++.++.  .+..+++|+.|++++|. +
T Consensus       426 ~~l~l~~n~-i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~--~~~~l~~L~~L~Ls~N~-l  498 (567)
T 1dce_A          426 RSKFLLENS-VLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPP--ALAALRCLEVLQASDNA-L  498 (567)
T ss_dssp             HHHHHHHHH-HHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCG--GGGGCTTCCEEECCSSC-C
T ss_pred             hhhhhhccc-ccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccch--hhhcCCCCCEEECCCCC-C
Confidence            1   00000 11  1235899999986 5666775 788999999999986 4665542  57889999999999975 4


Q ss_pred             ceecccccccccccccCCccceeeccCCcCcceec-CCCccccCCCccEEeeccCCccccccCCcc----cCCCcceEEc
Q 022501          178 TEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFC-SGNCTFKFPSLEDLFVIDCPKMMIFSFGVL----STPRLREVRK  252 (296)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~-~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~----~~~~L~~l~l  252 (296)
                      +.++ .       +..+++|+.|+++++ +++.+. +. .+..+++|+.|++++++ ++.+|....    .+|+|+.|++
T Consensus       499 ~~lp-~-------l~~l~~L~~L~Ls~N-~l~~~~~p~-~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          499 ENVD-G-------VANLPRLQELLLCNN-RLQQSAAIQ-PLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCG-G-------GTTCSSCCEEECCSS-CCCSSSTTG-GGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCc-c-------cCCCCCCcEEECCCC-CCCCCCCcH-HHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence            4454 2       333899999999986 467763 22 35789999999999975 666655432    3688888853

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.16  E-value=1.5e-11  Score=93.44  Aligned_cols=62  Identities=15%  Similarity=0.256  Sum_probs=37.6

Q ss_pred             ccccceEEEeeccCcc--ccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccce
Q 022501            5 VIANLEELKLSGKDIT--MICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKE   71 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   71 (296)
                      ..++|++|+++++.+.  .+ +..+.  .+++|+.|++++|.+..+  ..+..+++|++|++++|.+..
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~-~~~~~--~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~   78 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKL-EGLTD--EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG   78 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBC-CSCCT--TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS
T ss_pred             CCccCeEEEccCCcCChhHH-HHHHh--hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc
Confidence            3566777777776665  33 33344  567777777766666555  245566666666666665443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.15  E-value=2.2e-10  Score=88.82  Aligned_cols=130  Identities=18%  Similarity=0.129  Sum_probs=75.7

Q ss_pred             CCCccEEEeccCccc-cccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceeccccccccccc
Q 022501          113 FQNLETLEIWWCNNL-INLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDE  191 (296)
Q Consensus       113 ~~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  191 (296)
                      +++|+.|++++|... ..++..+..+++|+.|++++|. ++..   ..+..+++|++|++++|.....++..       .
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~   91 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGGLDML-------A   91 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSCCCHH-------H
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchHHHHH-------H
Confidence            356677777665422 2555555666777777776654 4443   23456677777777776533222221       1


Q ss_pred             ccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccC----CcccCCCcceEEcccC
Q 022501          192 IVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF----GVLSTPRLREVRKNWG  255 (296)
Q Consensus       192 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~~~L~~l~l~~~  255 (296)
                      ..+++|+.|+++++ .++.++....+..+++|+.|++++|+ +..+|.    .+..+++|+.+++..+
T Consensus        92 ~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A           92 EKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             HHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             hhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence            22677777777766 35555422234567777777777763 555554    4456777777777543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.04  E-value=2.7e-10  Score=86.49  Aligned_cols=128  Identities=16%  Similarity=0.123  Sum_probs=77.5

Q ss_pred             CCCccEEEeccCccc-cccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceeccccccccccc
Q 022501          113 FQNLETLEIWWCNNL-INLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDE  191 (296)
Q Consensus       113 ~~~L~~L~l~~~~~l-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  191 (296)
                      +++|+.|++++|... +.++..+..+++|+.|++++| .++..   ..+..+++|++|++++|.....++...       
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~-------   84 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLA-------   84 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHH-------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchHHHHh-------
Confidence            355677777666433 255555566677777777765 34443   235667777777777765332232221       


Q ss_pred             ccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccC----CcccCCCcceEEcc
Q 022501          192 IVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSF----GVLSTPRLREVRKN  253 (296)
Q Consensus       192 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~~~L~~l~l~  253 (296)
                      ..+++|++|+++++. ++.++....+..+++|++|++++| .++.++.    .+..+++|+.++++
T Consensus        85 ~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           85 EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            227778888887764 555432123467788888888887 4556554    45567888888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.02  E-value=2.9e-10  Score=88.88  Aligned_cols=132  Identities=16%  Similarity=0.123  Sum_probs=79.7

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD  110 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  110 (296)
                      .+++|+.|++++|.+..++. +....++|++|++++|.+..+.       ....+++|+.|.++++. +..++...   +
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~-------~l~~l~~L~~L~Ls~N~-l~~~~~~~---~   84 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD-------GFPLLRRLKTLLVNNNR-ICRIGEGL---D   84 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC-------CCCCCSSCCEEECCSSC-CCEECSCH---H
T ss_pred             CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCccc-------ccccCCCCCEEECCCCc-ccccCcch---h
Confidence            45677777777776665542 2233347777777777666541       12336777777777653 33443220   2


Q ss_pred             ccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCCc--ccccCCCCccEEEEeCccc
Q 022501          111 SVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVSS--STAKSLVCLMKLRIDGCKL  176 (296)
Q Consensus       111 ~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~l~~~~~  176 (296)
                      ..+++|+.|+++++ .++.++.  .+..+++|+.|++++++ +...+..  ..+..+++|+.|+++++..
T Consensus        85 ~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           85 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            55677888888775 4455554  55667788888887754 3333321  0256778888888877654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.02  E-value=1.3e-09  Score=86.42  Aligned_cols=125  Identities=16%  Similarity=0.178  Sum_probs=71.5

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChH-HHhcCCcccEEEEeccccceEeecCccccccCCcccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIG-FLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQI   88 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L   88 (296)
                      +++++++++++.++ ..    ..++|+.|++++|.+..++.. .+..+++|++|++++|.+.++.+     .....+++|
T Consensus        11 ~~l~~s~~~l~~ip-~~----~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L   80 (192)
T 1w8a_A           11 TTVDCTGRGLKEIP-RD----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-----NAFEGASHI   80 (192)
T ss_dssp             TEEECTTSCCSSCC-SC----CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-----TTTTTCTTC
T ss_pred             CEEEcCCCCcCcCc-cC----CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-----hHcCCcccC
Confidence            57778887777763 22    234788888888887766653 46788888888888886655432     112335666


Q ss_pred             ceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccC
Q 022501           89 KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYC  148 (296)
Q Consensus        89 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c  148 (296)
                      ++|.+++.. +..++...   +..+++|+.|+++++......+..+..+++|++|+++++
T Consensus        81 ~~L~Ls~N~-l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           81 QELQLGENK-IKEISNKM---FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSCC-CCEECSSS---STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CEEECCCCc-CCccCHHH---hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            666666543 22222111   334555666666554322222334444555555555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.98  E-value=1.8e-09  Score=85.62  Aligned_cols=110  Identities=18%  Similarity=0.169  Sum_probs=88.2

Q ss_pred             cccceEEEeeccCccccccC-CCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            6 IANLEELKLSGKDITMICHD-HLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .++|++|++++|.++.+.+. .+.  .+++|++|++++|.+..+++..+.++++|++|++++|.+..+.+.     ....
T Consensus        28 ~~~l~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~  100 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRISSDGLFG--RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK-----MFLG  100 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGG--GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS-----SSTT
T ss_pred             CCCCCEEECCCCcCCccCCccccc--cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH-----HhcC
Confidence            45899999999999988653 366  899999999999999988777889999999999999998887541     1245


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCcc
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNN  126 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  126 (296)
                      +++|++|.+++.......+..    +..+++|+.|++++++.
T Consensus       101 l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A          101 LHQLKTLNLYDNQISCVMPGS----FEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CTTCCEEECCSSCCCEECTTS----STTCTTCCEEECTTCCB
T ss_pred             CCCCCEEECCCCcCCeeCHHH----hhcCCCCCEEEeCCCCc
Confidence            899999999986543222333    66789999999998643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.97  E-value=1.8e-09  Score=84.32  Aligned_cols=126  Identities=16%  Similarity=0.168  Sum_probs=94.0

Q ss_pred             ceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcccc
Q 022501            9 LEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQI   88 (296)
Q Consensus         9 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L   88 (296)
                      .+.++++++++..++   ..  ..++|+.|++++|.+..++...+..+++|++|++++|.+..+.+     .....+++|
T Consensus         9 ~~~l~~~~~~l~~~p---~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L   78 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP---TG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD-----GVFDKLTKL   78 (177)
T ss_dssp             TTEEECCSSCCSSCC---TT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCTTC
T ss_pred             CCEEEecCCCCccCC---CC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh-----hHccCCCcc
Confidence            467788888877764   22  45789999999998888887778889999999999997765532     112458899


Q ss_pred             ceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCc
Q 022501           89 KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQ  149 (296)
Q Consensus        89 ~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~  149 (296)
                      +.|.++++. +..++...   +..+++|+.|+++++ .+..++.. +..+++|++|++++++
T Consensus        79 ~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           79 TILYLHENK-LQSLPNGV---FDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCC-ccccCHHH---hhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence            999998764 44443321   466889999999986 55666664 4668999999999865

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.96  E-value=3.7e-09  Score=82.58  Aligned_cols=129  Identities=16%  Similarity=0.131  Sum_probs=89.0

Q ss_pred             CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccC
Q 022501           34 NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF  113 (296)
Q Consensus        34 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  113 (296)
                      ..+.+++.++....+|..   -.++|++|++.+|.+.++.+     .....+++|++|.++++. +..++...   +..+
T Consensus         8 ~~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l   75 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPH-----GVFDKLTQLTKLSLSQNQ-IQSLPDGV---FDKL   75 (177)
T ss_dssp             ETTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSC-CCCCCTTT---TTTC
T ss_pred             CCCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCH-----HHhcCcccccEEECCCCc-ceEeChhH---ccCC
Confidence            456788888877777742   34788999999887765432     112458899999998763 44443321   4568


Q ss_pred             CCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCcccc
Q 022501          114 QNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLM  177 (296)
Q Consensus       114 ~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~  177 (296)
                      ++|+.|+++++ .++.++.. +..+++|++|+++++ .++.++.. .+..+++|++|++++|+..
T Consensus        76 ~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           76 TKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred             CccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHH-HhcCCcccCEEEecCCCee
Confidence            88999999886 45555553 567889999999875 45555432 3567888999999887643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.94  E-value=5.5e-09  Score=82.91  Aligned_cols=122  Identities=13%  Similarity=0.136  Sum_probs=67.5

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK   89 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~   89 (296)
                      +++++++++++.++ ..    ..++|+.|++++|.+..+| ..+..+++|++|++++|.+..+.+     .....+++|+
T Consensus        13 ~~l~~~~~~l~~ip-~~----~~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~-----~~f~~l~~L~   81 (193)
T 2wfh_A           13 TVVRCSNKGLKVLP-KG----IPRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSN-----QSFSNMTQLL   81 (193)
T ss_dssp             TEEECTTSCCSSCC-SC----CCTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCT-----TTTTTCTTCC
T ss_pred             CEEEcCCCCCCcCC-CC----CCCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCH-----hHccCCCCCC
Confidence            46777777777764 22    3468888888888888777 467788888888888886655422     1113355566


Q ss_pred             eeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEecc
Q 022501           90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSY  147 (296)
Q Consensus        90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~  147 (296)
                      +|.+++.. +..++...   +..+++|+.|+++++ .+..++. .+..+++|+.|++++
T Consensus        82 ~L~Ls~N~-l~~i~~~~---f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           82 TLILSYNR-LRCIPPRT---FDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             EEECCSSC-CCBCCTTT---TTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCc-cCEeCHHH---hCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence            66555432 22222111   333445555555443 2333332 133344444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.94  E-value=8.8e-08  Score=84.69  Aligned_cols=219  Identities=13%  Similarity=0.068  Sum_probs=117.5

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ   87 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   87 (296)
                      +|+.+.+..+ ++.++...|.  . .+|+.+.+.+ ....+..+.|.+|++|+++.+..+.+..+..      ....+++
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~--~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~------~aF~~~~  204 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFF--N-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPA------STFVYAG  204 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTT--T-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECT------TTTTTCC
T ss_pred             CccEEEeCCC-ccEECHHhcC--C-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEech------hhEeecc
Confidence            4555554433 5555444444  3 3566666654 3445555566677777777777665555422      1122456


Q ss_pred             cceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCcc
Q 022501           88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLM  167 (296)
Q Consensus        88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  167 (296)
                      |+.+.+.  .++..++...   +..+++|+++.+..  .+..+......-.+|+.+.+.+  .+..+... .+.++++|+
T Consensus       205 L~~l~lp--~~l~~I~~~a---F~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~-aF~~c~~L~  274 (401)
T 4fdw_A          205 IEEVLLP--VTLKEIGSQA---FLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIASR-AFYYCPELA  274 (401)
T ss_dssp             CSEEECC--TTCCEECTTT---TTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECTT-TTTTCTTCC
T ss_pred             cCEEEeC--CchheehhhH---hhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEEChh-HhhCCCCCC
Confidence            6666664  2344444332   55567777777764  3444544332225677777743  34443322 456777778


Q ss_pred             EEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCc-ccCCC
Q 022501          168 KLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGV-LSTPR  246 (296)
Q Consensus       168 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~  246 (296)
                      .+.+.++........  .-....+..+++|+.+.+.+  +++.+.... +..|++|+.+.+.+  .++.+...+ ..+ +
T Consensus       275 ~l~l~~~~~~~~~~~--~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a-F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~  346 (401)
T 4fdw_A          275 EVTTYGSTFNDDPEA--MIHPYCLEGCPKLARFEIPE--SIRILGQGL-LGGNRKVTQLTIPA--NVTQINFSAFNNT-G  346 (401)
T ss_dssp             EEEEESSCCCCCTTC--EECTTTTTTCTTCCEECCCT--TCCEECTTT-TTTCCSCCEEEECT--TCCEECTTSSSSS-C
T ss_pred             EEEeCCccccCCccc--EECHHHhhCCccCCeEEeCC--ceEEEhhhh-hcCCCCccEEEECc--cccEEcHHhCCCC-C
Confidence            777766432100000  00112355577777777763  356665544 55667777777743  355554432 345 6


Q ss_pred             cceEEcccC
Q 022501          247 LREVRKNWG  255 (296)
Q Consensus       247 L~~l~l~~~  255 (296)
                      |+.+++..+
T Consensus       347 L~~l~l~~n  355 (401)
T 4fdw_A          347 IKEVKVEGT  355 (401)
T ss_dssp             CCEEEECCS
T ss_pred             CCEEEEcCC
Confidence            777777543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.93  E-value=2.2e-09  Score=85.29  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=88.3

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      ..++|++|++++|.++.++ ..+.  .+++|+.|++++|.+..++...+.++++|++|++++|.+..+.+.     ....
T Consensus        29 ~~~~l~~L~L~~n~i~~ip-~~~~--~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-----~f~~  100 (193)
T 2wfh_A           29 IPRDVTELYLDGNQFTLVP-KELS--NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR-----TFDG  100 (193)
T ss_dssp             CCTTCCEEECCSSCCCSCC-GGGG--GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT-----TTTT
T ss_pred             CCCCCCEEECCCCcCchhH-HHhh--cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH-----HhCC
Confidence            3578999999999999874 5566  899999999999999999888899999999999999988776431     2345


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCc
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN  125 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~  125 (296)
                      +++|+.|.+++.. +..++...   +..+++|+.|++.+++
T Consensus       101 l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          101 LKSLRLLSLHGND-ISVVPEGA---FNDLSALSHLAIGANP  137 (193)
T ss_dssp             CTTCCEEECCSSC-CCBCCTTT---TTTCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCC-CCeeChhh---hhcCccccEEEeCCCC
Confidence            8999999999864 44554332   5568899999998864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.93  E-value=3.4e-09  Score=91.29  Aligned_cols=201  Identities=15%  Similarity=0.016  Sum_probs=129.4

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccc-cccC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVE-KQAG   83 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~~   83 (296)
                      .+++|++|.|.. +++.++...|.  .+++|+.+++.++.+..++...|..+.++.++.......  ......+. ....
T Consensus        99 g~~~L~~l~L~~-~i~~I~~~aF~--~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~--~~~~~~i~~~~f~  173 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNIEDAAFK--GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA--YRFKNRWEHFAFI  173 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEECTTTTT--TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH--HHTSTTTTTSCEE
T ss_pred             ccCCCcEEECCc-cccchhHHHhh--cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh--hhccccccccccc
Confidence            389999999999 88888888888  899999999999988888888887777666655433110  00000000 0001


Q ss_pred             Ccccc--------------------------ceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-Cccc
Q 022501           84 MLTQI--------------------------KSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSAS  136 (296)
Q Consensus        84 ~~~~L--------------------------~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~  136 (296)
                      .+.+|                          +.+.+.+.-.-.....    ....+++|+++++.++ .+..++. .+.+
T Consensus       174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~----l~~~~~~L~~l~L~~n-~i~~I~~~aF~~  248 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKL----IRDYMPNLVSLDISKT-NATTIPDFTFAQ  248 (329)
T ss_dssp             ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHH----HHHHCTTCCEEECTTB-CCCEECTTTTTT
T ss_pred             cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHH----HHHhcCCCeEEECCCC-CcceecHhhhhC
Confidence            12222                          2333322100000000    0123788999999875 4666665 4677


Q ss_pred             cCCccEEEeccCcCccccCCcccccCCCCcc-EEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCC
Q 022501          137 FENLTTLEVSYCQRLKNLVSSSTAKSLVCLM-KLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGN  215 (296)
Q Consensus       137 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~  215 (296)
                      +++|+.+++.+.  +..+... .+.++++|+ .+.+.+  .++.+..      .++..+++|+.+++.+. +++.+....
T Consensus       249 ~~~L~~l~l~~n--i~~I~~~-aF~~~~~L~~~l~l~~--~l~~I~~------~aF~~c~~L~~l~l~~n-~i~~I~~~a  316 (329)
T 3sb4_A          249 KKYLLKIKLPHN--LKTIGQR-VFSNCGRLAGTLELPA--SVTAIEF------GAFMGCDNLRYVLATGD-KITTLGDEL  316 (329)
T ss_dssp             CTTCCEEECCTT--CCEECTT-TTTTCTTCCEEEEECT--TCCEECT------TTTTTCTTEEEEEECSS-CCCEECTTT
T ss_pred             CCCCCEEECCcc--cceehHH-HhhCChhccEEEEEcc--cceEEch------hhhhCCccCCEEEeCCC-ccCccchhh
Confidence            889999999863  6665443 578889999 999987  4554433      24566999999998653 477876655


Q ss_pred             ccccCCCccEEee
Q 022501          216 CTFKFPSLEDLFV  228 (296)
Q Consensus       216 ~~~~~~~L~~L~l  228 (296)
                       +..+++|+.++.
T Consensus       317 -F~~~~~L~~ly~  328 (329)
T 3sb4_A          317 -FGNGVPSKLIYK  328 (329)
T ss_dssp             -TCTTCCCCEEEC
T ss_pred             -hcCCcchhhhcc
Confidence             677888888764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.90  E-value=1.3e-07  Score=83.50  Aligned_cols=214  Identities=12%  Similarity=0.055  Sum_probs=151.1

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ   87 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   87 (296)
                      +|+++.+.. .++.++...|.  .|++|+.+++.++.+..++...|. ..+|+++.+..+ ++.+.. .    ....+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~--~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~-~----aF~~~~~  227 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFY--YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGS-Q----AFLKTSQ  227 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTT--TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECT-T----TTTTCTT
T ss_pred             CceEEEeCC-CccEehHHHhh--CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehh-h----HhhCCCC
Confidence            588888875 67788777788  899999999999888888888777 589999999854 444322 1    1245889


Q ss_pred             cceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCc----cccCCcccccC
Q 022501           88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRL----KNLVSSSTAKS  162 (296)
Q Consensus        88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l----~~~~~~~~~~~  162 (296)
                      |+.+.+.+  ++..+....   +.. .+|+.+.+..  .++.++. .+.++++|+.+.+.+....    ..+.. ..+.+
T Consensus       228 L~~l~l~~--~l~~I~~~a---F~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~  298 (401)
T 4fdw_A          228 LKTIEIPE--NVSTIGQEA---FRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEG  298 (401)
T ss_dssp             CCCEECCT--TCCEECTTT---TTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTT
T ss_pred             CCEEecCC--CccCccccc---ccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECH-HHhhC
Confidence            99999975  566665543   333 6899999954  4666654 4667899999999764321    12222 35778


Q ss_pred             CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-c
Q 022501          163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-V  241 (296)
Q Consensus       163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~  241 (296)
                      +++|+.+.+.+  .++.+..      .++..+++|+.+.+.+  +++.+.... +..+ +|+.+.+.+. ....++.+ +
T Consensus       299 c~~L~~l~l~~--~i~~I~~------~aF~~c~~L~~l~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n-~~~~l~~~~F  365 (401)
T 4fdw_A          299 CPKLARFEIPE--SIRILGQ------GLLGGNRKVTQLTIPA--NVTQINFSA-FNNT-GIKEVKVEGT-TPPQVFEKVW  365 (401)
T ss_dssp             CTTCCEECCCT--TCCEECT------TTTTTCCSCCEEEECT--TCCEECTTS-SSSS-CCCEEEECCS-SCCBCCCSSC
T ss_pred             CccCCeEEeCC--ceEEEhh------hhhcCCCCccEEEECc--cccEEcHHh-CCCC-CCCEEEEcCC-CCcccccccc
Confidence            89999999974  2444433      2355689999999964  477776655 6778 9999999986 44444443 3


Q ss_pred             ccC-CCcceEEcc
Q 022501          242 LST-PRLREVRKN  253 (296)
Q Consensus       242 ~~~-~~L~~l~l~  253 (296)
                      ..+ .+++.+++-
T Consensus       366 ~~~~~~l~~l~vp  378 (401)
T 4fdw_A          366 YGFPDDITVIRVP  378 (401)
T ss_dssp             CCSCTTCCEEEEC
T ss_pred             cCCCCCccEEEeC
Confidence            344 478888884

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.89  E-value=1.4e-09  Score=85.00  Aligned_cols=130  Identities=15%  Similarity=0.141  Sum_probs=98.9

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +++|++|++++++++.++ ....  ..++|+.|++++|.+..++  .+..+++|++|++++|.+..+.+  +   ....+
T Consensus        18 ~~~L~~L~l~~n~l~~i~-~~~~--~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~--~---~~~~l   87 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIE-NLGA--TLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGE--G---LDQAL   87 (176)
T ss_dssp             TTSCEEEECTTSCCCSCC-CGGG--GTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECS--C---HHHHC
T ss_pred             cCCceEEEeeCCCCchhH-Hhhh--cCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCCcccccCc--c---hhhcC
Confidence            678999999999998773 3222  4459999999999988773  57789999999999998887632  1   11348


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC----ccccCCccEEEeccCc
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS----SASFENLTTLEVSYCQ  149 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~l~~L~~L~l~~c~  149 (296)
                      ++|+.|+++++. +..++.  ...+..+++|+.|++++++ +...+..    +..+++|+.|+++++.
T Consensus        88 ~~L~~L~L~~N~-i~~~~~--~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           88 PDLTELILTNNS-LVELGD--LDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TTCCEEECCSCC-CCCGGG--GGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCCEEECCCCc-CCcchh--hHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            999999999874 455543  1126678999999999975 4555653    6778999999998765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.85  E-value=7.4e-09  Score=95.66  Aligned_cols=121  Identities=14%  Similarity=0.126  Sum_probs=79.2

Q ss_pred             CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccC
Q 022501           34 NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF  113 (296)
Q Consensus        34 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  113 (296)
                      .|+.|++++|.+..+|.  +..+++|++|++++|.+..+      +...+.+++|+.|.++++. +..++ .    +..+
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~Ls~N~-l~~lp-~----l~~l  507 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDNA-LENVD-G----VANL  507 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCC------CGGGGGCTTCCEEECCSSC-CCCCG-G----GTTC
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCccccccc------chhhhcCCCCCEEECCCCC-CCCCc-c----cCCC
Confidence            47777887777777764  67777788888877766543      2233457778888777653 34444 2    6677


Q ss_pred             CCccEEEeccCcccccc--ccCccccCCccEEEeccCcCccccCCc--ccccCCCCccEEE
Q 022501          114 QNLETLEIWWCNNLINL--VPSSASFENLTTLEVSYCQRLKNLVSS--STAKSLVCLMKLR  170 (296)
Q Consensus       114 ~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~l~~L~~L~  170 (296)
                      ++|+.|+++++ .+..+  |..+..+++|+.|+++++. ++..++.  .....+++|+.|+
T Consensus       508 ~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          508 PRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence            88888888775 45555  6667778888888888754 4444322  1233467787774

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.80  E-value=5.8e-09  Score=99.24  Aligned_cols=105  Identities=18%  Similarity=0.116  Sum_probs=47.4

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD  110 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  110 (296)
                      .+++|+.|++++|.+..+|...+ .+++|++|++++|.+..+      +..+..+++|+.|+++++. +..++..    +
T Consensus       222 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~l------p~~~~~l~~L~~L~Ls~N~-l~~lp~~----~  289 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTEL------PAEIKNLSNLRVLDLSHNR-LTSLPAE----L  289 (727)
T ss_dssp             CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCC------CGGGGGGTTCCEEECTTSC-CSSCCSS----G
T ss_pred             cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCccc------ChhhhCCCCCCEEeCcCCc-CCccChh----h
Confidence            34555555555555444444332 455555555555544322      1112334555555555433 2233333    3


Q ss_pred             ccCCCccEEEeccCccccccccCccccCCccEEEeccC
Q 022501          111 SVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYC  148 (296)
Q Consensus       111 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c  148 (296)
                      ..+++|+.|+++++ .++.+|..+..+++|+.|+++++
T Consensus       290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred             cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence            44455555555443 33444444444555555555443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.78  E-value=6.3e-11  Score=94.54  Aligned_cols=110  Identities=22%  Similarity=0.216  Sum_probs=55.1

Q ss_pred             HHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccc
Q 022501           52 FLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLV  131 (296)
Q Consensus        52 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  131 (296)
                      .+..+++|++|++++|.+..+.       ....+++|+.|.++++. +..++..    ...+++|+.|+++++ .+..++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-------~~~~l~~L~~L~l~~n~-l~~l~~~----~~~~~~L~~L~L~~N-~l~~l~  109 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-------SLSGMENLRILSLGRNL-IKKIENL----DAVADTLEELWISYN-QIASLS  109 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-------CHHHHTTCCEEEEEEEE-ECSCSSH----HHHHHHCSEEEEEEE-ECCCHH
T ss_pred             HHhcCCCCCEEECCCCCCcccc-------ccccCCCCCEEECCCCC-cccccch----hhcCCcCCEEECcCC-cCCcCC
Confidence            4455555555555555444421       11235555555555442 2233221    333455666666664 333343


Q ss_pred             cCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccc
Q 022501          132 PSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKL  176 (296)
Q Consensus       132 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~  176 (296)
                       .+..+++|++|+++++. +.+++....+..+++|++|++++|+.
T Consensus       110 -~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          110 -GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             -HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             -ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence             34456667777776543 33332212345667777777777653

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.76  E-value=1e-08  Score=79.55  Aligned_cols=104  Identities=17%  Similarity=0.187  Sum_probs=77.7

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ   87 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   87 (296)
                      ..++++++++.++.++ ..    ..++|+.|++++|.+..+++..+.++++|++|++++|.+..+.+.     ....+++
T Consensus        10 ~~~~l~~s~n~l~~ip-~~----~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-----~f~~l~~   79 (170)
T 3g39_A           10 SGTTVDCSGKSLASVP-TG----IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAG-----VFDKLTQ   79 (170)
T ss_dssp             ETTEEECTTSCCSSCC-SC----CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT-----TTTTCTT
T ss_pred             CCCEEEeCCCCcCccC-cc----CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChh-----hccCCCC
Confidence            3577888888888874 22    348899999999998888777888899999999999987765331     1245889


Q ss_pred             cceeEecccccccccccccCcccccCCCccEEEeccCc
Q 022501           88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN  125 (296)
Q Consensus        88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~  125 (296)
                      |++|.+++.. +..++...   +..+++|+.|++++++
T Consensus        80 L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           80 LTQLSLNDNQ-LKSIPRGA---FDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCc-cCEeCHHH---hcCCCCCCEEEeCCCC
Confidence            9999998763 45554322   5668899999998864

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.76  E-value=4e-10  Score=89.88  Aligned_cols=128  Identities=19%  Similarity=0.173  Sum_probs=92.2

Q ss_pred             CCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccc
Q 022501           26 HLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQ  105 (296)
Q Consensus        26 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  105 (296)
                      .+.  .+++|+.|++++|.+..+|  .+..+++|++|++++|.+..+      +.....+++|+.|.++++ .+..++ .
T Consensus        43 ~~~--~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l------~~~~~~~~~L~~L~L~~N-~l~~l~-~  110 (198)
T 1ds9_A           43 TLS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKI------ENLDAVADTLEELWISYN-QIASLS-G  110 (198)
T ss_dssp             HHH--HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSC------SSHHHHHHHCSEEEEEEE-ECCCHH-H
T ss_pred             HHh--cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccc------cchhhcCCcCCEEECcCC-cCCcCC-c
Confidence            455  7899999999998888887  678899999999999977644      222344789999999986 344554 2


Q ss_pred             cCcccccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCC--------cccccCCCCccEEE
Q 022501          106 CYKLDSVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVS--------SSTAKSLVCLMKLR  170 (296)
Q Consensus       106 ~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~--------~~~~~~l~~L~~L~  170 (296)
                          +..+++|+.|+++++ .+..++.  .+..+++|++|+++++.-....+.        ...+..+++|+.|+
T Consensus       111 ----~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          111 ----IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ----HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ----cccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence                667889999999986 4554443  466789999999998753222111        11256788999886

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.74  E-value=1.3e-08  Score=79.35  Aligned_cols=102  Identities=13%  Similarity=0.146  Sum_probs=75.9

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK   89 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~   89 (296)
                      +.++++++++..++ ..    ..++|+.|++++|.+..+++..+.++++|++|++++|.+..+.+.     ....+++|+
T Consensus        15 ~~l~~~~n~l~~iP-~~----~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~-----~~~~l~~L~   84 (174)
T 2r9u_A           15 TLVNCQNIRLASVP-AG----IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG-----VFDKLTQLT   84 (174)
T ss_dssp             SEEECCSSCCSSCC-SC----CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCC
T ss_pred             cEEEeCCCCCCccC-CC----cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChh-----HhCCcchhh
Confidence            67888888887764 22    347899999999998888777888899999999999987765331     124588999


Q ss_pred             eeEecccccccccccccCcccccCCCccEEEeccCc
Q 022501           90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN  125 (296)
Q Consensus        90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~  125 (296)
                      .|.+++. .+..++...   +..+++|+.|++++++
T Consensus        85 ~L~L~~N-~l~~l~~~~---~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           85 QLDLNDN-HLKSIPRGA---FDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             EEECCSS-CCCCCCTTT---TTTCTTCSEEECCSSC
T ss_pred             EEECCCC-ccceeCHHH---hccccCCCEEEeCCCC
Confidence            9999875 344544322   5568899999998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.71  E-value=1.5e-08  Score=96.49  Aligned_cols=153  Identities=16%  Similarity=0.037  Sum_probs=86.4

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEecc-----CCCCccChHHHhcCCcccEEEEeccccceEeecCccccc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVS-----DKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQ   81 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~-----~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   81 (296)
                      +++..|.|.++.+...... ..  ....|+.+.|..     +.+ .+++..+..+++|++|++++|.+..+.      ..
T Consensus       173 ~~~~~l~L~~n~~~~~~~~-~l--~~l~Ls~~~i~~~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~------~~  242 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQA-LL--QHKKLSQYSIDEDDDIENRM-VMPKDSKYDDQLWHALDLSNLQIFNIS------AN  242 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTSCCSCCC------GG
T ss_pred             CccceEEeeCCCCCcchhh-Hh--hcCccCcccccCccccccce-ecChhhhccCCCCcEEECCCCCCCCCC------hh
Confidence            4567788877776664322 22  234444444422     222 355667888999999999999776542      23


Q ss_pred             cCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCccccc
Q 022501           82 AGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAK  161 (296)
Q Consensus        82 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  161 (296)
                      ...+++|++|.++++. +..++..    +..+++|+.|+++++. +..+|..+..+++|++|+++++ .++.++.  .+.
T Consensus       243 ~~~l~~L~~L~Ls~N~-l~~lp~~----~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~--~~~  313 (727)
T 4b8c_D          243 IFKYDFLTRLYLNGNS-LTELPAE----IKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPW--EFG  313 (727)
T ss_dssp             GGGCCSCSCCBCTTSC-CSCCCGG----GGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCS--STT
T ss_pred             hcCCCCCCEEEeeCCc-CcccChh----hhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccCh--hhh
Confidence            3468999999999874 4466655    7789999999999874 6688888888999999999986 4666653  378


Q ss_pred             CCCCccEEEEeCccccc
Q 022501          162 SLVCLMKLRIDGCKLMT  178 (296)
Q Consensus       162 ~l~~L~~L~l~~~~~~~  178 (296)
                      .+++|+.|++++|....
T Consensus       314 ~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          314 NLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             SCTTCCCEECTTSCCCS
T ss_pred             cCCCccEEeCCCCccCC
Confidence            89999999999987543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.61  E-value=9.1e-08  Score=74.17  Aligned_cols=103  Identities=14%  Similarity=0.065  Sum_probs=68.0

Q ss_pred             CccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccC
Q 022501           34 NLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF  113 (296)
Q Consensus        34 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  113 (296)
                      ..+.++++++.+..+|..+   .++|++|++++|.++++.+     .....+++|++|.+++.. +..++...   +..+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~-----~~~~~l~~L~~L~Ls~N~-l~~l~~~~---f~~l   77 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEP-----GVFDRLTQLTRLDLDNNQ-LTVLPAGV---FDKL   77 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSC-CCCCCTTT---TTTC
T ss_pred             CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccCh-----hhhcCcccCCEEECCCCC-cCccChhh---ccCC
Confidence            4567888877777777532   3678888888887766533     112447788888887653 44444331   3567


Q ss_pred             CCccEEEeccCccccccccC-ccccCCccEEEeccCc
Q 022501          114 QNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQ  149 (296)
Q Consensus       114 ~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~  149 (296)
                      ++|+.|+++++ .+..++.. +..+++|++|++++++
T Consensus        78 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           78 TQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            78888888775 45555553 5667888888887754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.55  E-value=1.9e-07  Score=72.71  Aligned_cols=102  Identities=14%  Similarity=0.083  Sum_probs=71.7

Q ss_pred             ccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCC
Q 022501           35 LKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQ  114 (296)
Q Consensus        35 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  114 (296)
                      -+.++++++.+..+|..+   .++|++|++++|.+.++.+     .....+++|+.|.+++. .+..++...   +..++
T Consensus        14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~i~~~~---~~~l~   81 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEP-----GVFDHLVNLQQLYFNSN-KLTAIPTGV---FDKLT   81 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTT---TTTCT
T ss_pred             CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCH-----HHhcCCcCCCEEECCCC-CCCccChhH---hCCcc
Confidence            467888888888887532   3788888888887766533     12345888888888876 455554431   35678


Q ss_pred             CccEEEeccCccccccccC-ccccCCccEEEeccCc
Q 022501          115 NLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQ  149 (296)
Q Consensus       115 ~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~  149 (296)
                      +|+.|+++++ .+..++.. +..+++|++|++++++
T Consensus        82 ~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           82 QLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             hhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCC
Confidence            8889988875 55566654 6678888888888754

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.41  E-value=3.2e-09  Score=93.04  Aligned_cols=89  Identities=15%  Similarity=0.011  Sum_probs=40.0

Q ss_pred             CCCccEEEeccCccccc-----cccCccccCCccEEEeccCcCccccCC---cccccCCCCccEEEEeCccccceecccc
Q 022501          113 FQNLETLEIWWCNNLIN-----LVPSSASFENLTTLEVSYCQRLKNLVS---SSTAKSLVCLMKLRIDGCKLMTEIISSE  184 (296)
Q Consensus       113 ~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~  184 (296)
                      .++|++|++++|. +++     +...+...++|++|++++|. +++...   ...+...++|++|++++|..-..-..  
T Consensus       154 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~--  229 (372)
T 3un9_A          154 QCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL--  229 (372)
T ss_dssp             TCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH--
T ss_pred             CCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH--
Confidence            3456666666653 221     22222335566666666543 332110   01223445677777766643111000  


Q ss_pred             cccccccccCCccceeeccCCc
Q 022501          185 GDVEEDEIVFSRLKWLSLECLD  206 (296)
Q Consensus       185 ~~~~~~~~~~~~L~~L~l~~~~  206 (296)
                       .....+...++|++|++++++
T Consensus       230 -~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          230 -ALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             -HHHHHHHHCSSCCEEECTTSS
T ss_pred             -HHHHHHHhCCCCCEEeccCCC
Confidence             000012225677777777654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=2.1e-07  Score=71.99  Aligned_cols=41  Identities=17%  Similarity=0.154  Sum_probs=23.6

Q ss_pred             CccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccc
Q 022501          195 SRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMI  236 (296)
Q Consensus       195 ~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~  236 (296)
                      ++|++|++++|+++++--... ...+++|++|++++|+.++.
T Consensus       114 ~~L~~L~Ls~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          114 KSMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHCCEEEEESCTTCCHHHHHH-GGGCTTCCEEEEESCTTCCC
T ss_pred             CCCCEEEcCCCCcCCHHHHHH-HhcCCCCCEEECCCCCCCCc
Confidence            356666666666665533222 23466677777777766654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.34  E-value=2.3e-07  Score=71.74  Aligned_cols=89  Identities=16%  Similarity=0.131  Sum_probs=49.3

Q ss_pred             cccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccccc----CCCccEEEeccCcccccccc-
Q 022501           58 NVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSV----FQNLETLEIWWCNNLINLVP-  132 (296)
Q Consensus        58 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~~~-  132 (296)
                      +|++|++++|.+    ...++... ..+++|++|++++|..+++.....   +..    .++|++|++++|..+++... 
T Consensus        62 ~L~~LDLs~~~I----td~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~---L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           62 KIQAIDATDSCI----MSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLER---LSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CEEEEEEESCCC----CGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHH---HHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             eEeEEeCcCCCc----cHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHH---HHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            466666666532    12222221 346666666666666555432211   222    23577777777776654322 


Q ss_pred             CccccCCccEEEeccCcCcccc
Q 022501          133 SSASFENLTTLEVSYCQRLKNL  154 (296)
Q Consensus       133 ~~~~l~~L~~L~l~~c~~l~~~  154 (296)
                      .+..+++|++|++++|+.+++.
T Consensus       134 ~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCCCH
T ss_pred             HHhcCCCCCEEECCCCCCCCch
Confidence            2345678888888888777764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.33  E-value=5.7e-07  Score=77.73  Aligned_cols=75  Identities=16%  Similarity=0.226  Sum_probs=38.6

Q ss_pred             EEeecc-CccccccCCCCCCcCCCccEEEecc-CCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501           12 LKLSGK-DITMICHDHLPKHLFQNLKSLEIVS-DKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK   89 (296)
Q Consensus        12 L~L~~~-~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~   89 (296)
                      ++.+++ ++..++ . ++  .+++|+.|+|++ |.+..++...+..+++|++|++++|.+.++.+.     ....+++|+
T Consensus        13 v~~~~~n~l~~ip-~-l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~~l~~L~   83 (347)
T 2ifg_A           13 LRCTRDGALDSLH-H-LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-----AFHFTPRLS   83 (347)
T ss_dssp             EECCSSCCCTTTT-T-SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-----GGGSCSCCC
T ss_pred             EEcCCCCCCCccC-C-CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH-----HhcCCcCCC
Confidence            444443 555553 2 44  455566666653 555555555555556666666665555554321     112355555


Q ss_pred             eeEecc
Q 022501           90 SLKLWE   95 (296)
Q Consensus        90 ~L~l~~   95 (296)
                      .|++++
T Consensus        84 ~L~l~~   89 (347)
T 2ifg_A           84 RLNLSF   89 (347)
T ss_dssp             EEECCS
T ss_pred             EEeCCC
Confidence            555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.32  E-value=6e-07  Score=78.11  Aligned_cols=64  Identities=13%  Similarity=-0.020  Sum_probs=33.8

Q ss_pred             CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCccee-----cCCCccccCCCccEEeeccCC
Q 022501          162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSF-----CSGNCTFKFPSLEDLFVIDCP  232 (296)
Q Consensus       162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l-----~~~~~~~~~~~L~~L~l~~c~  232 (296)
                      .+|+|++|.+.+|...........    ....+|+|++|+++++ .+.+.     ...  ...+++|+.|++++|.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la----~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~--L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFL----ESDILPQLETMDISAG-VLTDEGARLLLDH--VDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHH----HCSSGGGCSEEECCSS-CCBHHHHHHHHTT--HHHHTTCSEEECCSBB
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHH----hCccCCCCCEEECCCC-CCChHHHHHHHhh--cccCCcceEEECCCCc
Confidence            467777777777654321110000    0113677788887653 34442     111  1356778888887763

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.20  E-value=3e-06  Score=73.13  Aligned_cols=84  Identities=18%  Similarity=0.161  Sum_probs=68.4

Q ss_pred             cccceEEEeec-cCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            6 IANLEELKLSG-KDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         6 l~~L~~L~L~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      +++|++|+|++ |.++.+.+..+.  .+++|+.|+|++|.+..+++..|.++++|++|++++|.+..+.+..     ...
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~--~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~~  102 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLR--GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT-----VQG  102 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSC--SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT-----TCS
T ss_pred             CCCeeEEEccCCCCCCCcChhHhc--cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH-----ccc
Confidence            56799999997 999999777788  8999999999999999888888899999999999999887654311     112


Q ss_pred             ccccceeEecccc
Q 022501           85 LTQIKSLKLWELS   97 (296)
Q Consensus        85 ~~~L~~L~l~~~~   97 (296)
                      + +|+.|.+.+.+
T Consensus       103 ~-~L~~l~l~~N~  114 (347)
T 2ifg_A          103 L-SLQELVLSGNP  114 (347)
T ss_dssp             C-CCCEEECCSSC
T ss_pred             C-CceEEEeeCCC
Confidence            3 38899888654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.10  E-value=4.9e-06  Score=72.37  Aligned_cols=159  Identities=18%  Similarity=0.120  Sum_probs=96.8

Q ss_pred             ccccceEEEeeccCccc-----ccc----CCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeec
Q 022501            5 VIANLEELKLSGKDITM-----ICH----DHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSN   75 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~-----~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~   75 (296)
                      .|++|+.|.+.+...+.     +..    ..+.  .+|+|+.|+|+++....++.  + .+++|++|.+..|.+..    
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~--~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~----  207 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD--AMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPD----  207 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH--TCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCH----
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHh--cCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCCh----
Confidence            47999999997643221     100    1123  68999999998874445553  2 48999999999875422    


Q ss_pred             Ccccc-ccCCccccceeEeccccc-------ccccccccCcccccCCCccEEEeccCcccccccc---CccccCCccEEE
Q 022501           76 GEVEK-QAGMLTQIKSLKLWELSN-------LLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP---SSASFENLTTLE  144 (296)
Q Consensus        76 ~~~~~-~~~~~~~L~~L~l~~~~~-------l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~l~~L~~L~  144 (296)
                      ..+.. ....+|+|++|.++...+       +..+...  .....+|+|+.|.+.+|........   ....+++|++|+
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~--l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~Ld  285 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL--FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD  285 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG--SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEE
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH--HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEE
Confidence            11111 113589999999853211       1111111  0023589999999988754322111   113478999999


Q ss_pred             eccCcCccccCCcc---cccCCCCccEEEEeCcc
Q 022501          145 VSYCQRLKNLVSSS---TAKSLVCLMKLRIDGCK  175 (296)
Q Consensus       145 l~~c~~l~~~~~~~---~~~~l~~L~~L~l~~~~  175 (296)
                      ++.+ .+.+.....   ....+++|+.|+++.|.
T Consensus       286 Ls~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          286 ISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            9764 565531111   12457899999999885

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.06  E-value=2.7e-07  Score=80.78  Aligned_cols=169  Identities=18%  Similarity=0.131  Sum_probs=107.5

Q ss_pred             cccccceEEEeeccCccccccCCCCC---CcCCCccEEEeccCCCCcc-ChHHHhcCCcccEEEEeccccceEeecCccc
Q 022501            4 QVIANLEELKLSGKDITMICHDHLPK---HLFQNLKSLEIVSDKSDNF-SIGFLQRFHNVERLKLRNSSYKEIFSNGEVE   79 (296)
Q Consensus         4 ~~l~~L~~L~L~~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~   79 (296)
                      .++++|++|+++++.+.......+..   ...++|+.|++++|.+... ...+...+++|++|++++|.+..... ..+.
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~-~~L~  147 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEAC-KDLR  147 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHH-HHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHH-HHHH
Confidence            34789999999998887653222221   1347999999999987633 22344567899999999996643211 1111


Q ss_pred             ccc-CCccccceeEeccccccccccccc-CcccccCCCccEEEeccCccccc-----cccCccccCCccEEEeccCcCcc
Q 022501           80 KQA-GMLTQIKSLKLWELSNLLHIWEQC-YKLDSVFQNLETLEIWWCNNLIN-----LVPSSASFENLTTLEVSYCQRLK  152 (296)
Q Consensus        80 ~~~-~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~c~~l~  152 (296)
                      ... ...++|++|++++|. +....... ...+...++|++|++++|. +++     +...+...++|+.|++++|. ++
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~  224 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AG  224 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred             HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence            111 236789999999885 32211110 0013567889999999975 432     23344556799999999874 54


Q ss_pred             ccCCc---ccccCCCCccEEEEeCccc
Q 022501          153 NLVSS---STAKSLVCLMKLRIDGCKL  176 (296)
Q Consensus       153 ~~~~~---~~~~~l~~L~~L~l~~~~~  176 (296)
                      +....   ..+...++|++|++++|..
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            43211   1233568899999999863

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.03  E-value=0.00019  Score=63.04  Aligned_cols=204  Identities=11%  Similarity=0.058  Sum_probs=104.5

Q ss_pred             CccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEeccc-
Q 022501           18 DITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWEL-   96 (296)
Q Consensus        18 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-   96 (296)
                      .+..++...+.  .+++|+.+.+.++ ...++...|.++++|+.+.+..+ ++.+.. .    ....+..|+.+.+... 
T Consensus       149 ~~~~i~~~aF~--~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~-~----~F~~~~~L~~i~~~~~~  219 (394)
T 4fs7_A          149 GVTVIGDEAFA--TCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRD-Y----CFAECILLENMEFPNSL  219 (394)
T ss_dssp             TCCEECTTTTT--TCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECT-T----TTTTCTTCCBCCCCTTC
T ss_pred             cccccchhhhc--ccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCc-h----hhccccccceeecCCCc
Confidence            34444445565  6788888888543 23556666777888888777654 222211 0    1122444444333211 


Q ss_pred             -------------------ccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCC
Q 022501           97 -------------------SNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVS  156 (296)
Q Consensus        97 -------------------~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~  156 (296)
                                         ..+..+...   .+..+..|+.+.+...  ...+.. .+..+..++.+..... .+    .
T Consensus       220 ~~i~~~~~~~~~l~~i~ip~~~~~i~~~---~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~-~i----~  289 (394)
T 4fs7_A          220 YYLGDFALSKTGVKNIIIPDSFTELGKS---VFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV-IV----P  289 (394)
T ss_dssp             CEECTTTTTTCCCCEEEECTTCCEECSS---TTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS-EE----C
T ss_pred             eEeehhhcccCCCceEEECCCceecccc---cccccccceeEEcCCC--cceeeccccccccccceeccCce-ee----c
Confidence                               011111111   1333444555555431  111111 2233444554444321 11    1


Q ss_pred             cccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccc
Q 022501          157 SSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMI  236 (296)
Q Consensus       157 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~  236 (296)
                      ...+..+.+|+.+.+.+.  ++.+..      .++..+++|+.+++.+  .++.+.... +..|.+|+.+.+..  .++.
T Consensus       290 ~~~F~~~~~L~~i~l~~~--i~~I~~------~aF~~c~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~lp~--~l~~  356 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLDS--VKFIGE------EAFESCTSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINFPL--SLRK  356 (394)
T ss_dssp             TTTTTTCTTCCEEEECTT--CCEECT------TTTTTCTTCCEECCCT--TCCEECTTT-TTTCTTCCEECCCT--TCCE
T ss_pred             cccccccccccccccccc--cceech------hhhcCCCCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEECc--cccE
Confidence            123455667777776542  332221      2355578888888853  366665544 67788888888854  3666


Q ss_pred             ccCC-cccCCCcceEEcc
Q 022501          237 FSFG-VLSTPRLREVRKN  253 (296)
Q Consensus       237 ~~~~-~~~~~~L~~l~l~  253 (296)
                      +... +..+++|+.+++.
T Consensus       357 I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          357 IGANAFQGCINLKKVELP  374 (394)
T ss_dssp             ECTTTBTTCTTCCEEEEE
T ss_pred             ehHHHhhCCCCCCEEEEC
Confidence            6544 3577888888884

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.96  E-value=0.00033  Score=61.49  Aligned_cols=58  Identities=10%  Similarity=0.036  Sum_probs=32.1

Q ss_pred             cccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-cccCCCcceEEcc
Q 022501          191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-VLSTPRLREVRKN  253 (296)
Q Consensus       191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~l~  253 (296)
                      +..+++|+++.+.+  .++.+.... +..|.+|+.+.+-.  .++.+... +..|++|+.+++.
T Consensus       307 F~~c~~L~~i~lp~--~v~~I~~~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          307 FAGCISLKSIDIPE--GITQILDDA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             TTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred             ecCCCCcCEEEeCC--cccEehHhH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence            44455555555542  244443333 55667777777743  35555433 3466777777775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.68  E-value=0.0013  Score=57.65  Aligned_cols=217  Identities=14%  Similarity=0.088  Sum_probs=130.6

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEecc------------ccceEe
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNS------------SYKEIF   73 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~------------~~~~~~   73 (296)
                      +++|+++.+..+ +..++...+.  .+++|+.+++..+ ...+....+.+++.|+.+.+..+            .++.+.
T Consensus       161 c~~L~~i~l~~~-~~~I~~~~F~--~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~  236 (394)
T 4fs7_A          161 CESLEYVSLPDS-METLHNGLFS--GCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNII  236 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTT--TCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEE
T ss_pred             cCCCcEEecCCc-cceecccccc--CCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEE
Confidence            577888888653 4456556676  7889999988654 34555556677777777766543            111111


Q ss_pred             ecC---ccc-cccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCc
Q 022501           74 SNG---EVE-KQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQ  149 (296)
Q Consensus        74 ~~~---~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~  149 (296)
                      -..   .++ .....+..|+.+.+..  ....+....   +..+..++........ +  ....+..+.+|+.+.+.+  
T Consensus       237 ip~~~~~i~~~~f~~~~~l~~~~~~~--~~~~i~~~~---F~~~~~l~~~~~~~~~-i--~~~~F~~~~~L~~i~l~~--  306 (394)
T 4fs7_A          237 IPDSFTELGKSVFYGCTDLESISIQN--NKLRIGGSL---FYNCSGLKKVIYGSVI-V--PEKTFYGCSSLTEVKLLD--  306 (394)
T ss_dssp             ECTTCCEECSSTTTTCSSCCEEEECC--TTCEECSCT---TTTCTTCCEEEECSSE-E--CTTTTTTCTTCCEEEECT--
T ss_pred             ECCCceecccccccccccceeEEcCC--Ccceeeccc---cccccccceeccCcee-e--cccccccccccccccccc--
Confidence            000   000 1112355666666643  222332221   5556778877765421 1  112345678999998864  


Q ss_pred             CccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeec
Q 022501          150 RLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVI  229 (296)
Q Consensus       150 ~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~  229 (296)
                      .+..+... .+.++.+|+.+.+.+.  ++.+..      .++..+++|+.+.+..  +++.+.... +..|++|+.+.+.
T Consensus       307 ~i~~I~~~-aF~~c~~L~~i~lp~~--v~~I~~------~aF~~c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~lp  374 (394)
T 4fs7_A          307 SVKFIGEE-AFESCTSLVSIDLPYL--VEEIGK------RSFRGCTSLSNINFPL--SLRKIGANA-FQGCINLKKVELP  374 (394)
T ss_dssp             TCCEECTT-TTTTCTTCCEECCCTT--CCEECT------TTTTTCTTCCEECCCT--TCCEECTTT-BTTCTTCCEEEEE
T ss_pred             ccceechh-hhcCCCCCCEEEeCCc--ccEEhH------HhccCCCCCCEEEECc--cccEehHHH-hhCCCCCCEEEEC
Confidence            34444332 4678889999988542  443322      2456689999999964  377776655 7889999999996


Q ss_pred             cCCccccccCCcccCCCcceE
Q 022501          230 DCPKMMIFSFGVLSTPRLREV  250 (296)
Q Consensus       230 ~c~~l~~~~~~~~~~~~L~~l  250 (296)
                      +  .++.+...+..+++|+.+
T Consensus       375 ~--~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          375 K--RLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             G--GGGGGGGGBCTTCEEEEE
T ss_pred             C--CCEEhhheecCCCCCcEE
Confidence            5  355555556677888765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.68  E-value=0.00091  Score=58.61  Aligned_cols=81  Identities=11%  Similarity=0.151  Sum_probs=45.8

Q ss_pred             cccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc
Q 022501          159 TAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS  238 (296)
Q Consensus       159 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~  238 (296)
                      .+.++.+|+++.+...  ++.+.      ..++..+++|+++.+-.  .++.+.... +..|++|+.+.+.+...  .. 
T Consensus       306 aF~~c~~L~~i~lp~~--v~~I~------~~aF~~C~~L~~i~ip~--sv~~I~~~a-F~~C~~L~~i~~~~~~~--~~-  371 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG--ITQIL------DDAFAGCEQLERIAIPS--SVTKIPESA-FSNCTALNNIEYSGSRS--QW-  371 (394)
T ss_dssp             TTTTCTTCCEEECCTT--CCEEC------TTTTTTCTTCCEEEECT--TCCBCCGGG-GTTCTTCCEEEESSCHH--HH-
T ss_pred             eecCCCCcCEEEeCCc--ccEeh------HhHhhCCCCCCEEEECc--ccCEEhHhH-hhCCCCCCEEEECCcee--eh-
Confidence            3455566666666432  22221      23566789999999853  366665444 77899999999987532  22 


Q ss_pred             CCcccCCCcceEEcc
Q 022501          239 FGVLSTPRLREVRKN  253 (296)
Q Consensus       239 ~~~~~~~~L~~l~l~  253 (296)
                      ..+..+.+|+.+.+.
T Consensus       372 ~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          372 NAISTDSGLQNLPVA  386 (394)
T ss_dssp             HTCBCCCCC------
T ss_pred             hhhhccCCCCEEEeC
Confidence            233366788888764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.40  E-value=2.6e-05  Score=64.64  Aligned_cols=86  Identities=19%  Similarity=0.152  Sum_probs=49.8

Q ss_pred             cCCCccEEEeccCCCCccCh--HHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEeccccccccccccc--
Q 022501           31 LFQNLKSLEIVSDKSDNFSI--GFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQC--  106 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--  106 (296)
                      .+++|+.|+|++|.+..++.  ..+..+++|+.|++++|.+..+..+..+.    .+ +|+.|.+.+.+--..++...  
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~----~l-~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK----GL-KLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGT----TS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcc----cC-CcceEEccCCcCccccCcchhH
Confidence            57778888887777765432  35567788888888877666553322211    13 77777777766433222100  


Q ss_pred             -CcccccCCCccEEEe
Q 022501          107 -YKLDSVFQNLETLEI  121 (296)
Q Consensus       107 -~~~~~~~~~L~~L~l  121 (296)
                       ...+..+|+|+.|+=
T Consensus       243 ~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          243 ISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHCTTCCEESS
T ss_pred             HHHHHHHCcccCeECC
Confidence             011456677776653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.36  E-value=0.023  Score=49.23  Aligned_cols=54  Identities=13%  Similarity=0.201  Sum_probs=30.9

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEe
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLR   65 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   65 (296)
                      .+|+++.+.. .++.++...|.  .+.+|+.+++.++ ...+....|.++ +|+++.+.
T Consensus        46 ~~i~~v~ip~-~vt~Ig~~aF~--~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~   99 (379)
T 4h09_A           46 DRISEVRVNS-GITSIGEANFN--SCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGM   99 (379)
T ss_dssp             GGCSEEEECT-TEEEECTTTTT--TCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEEC
T ss_pred             cCCEEEEeCC-CccChHHHHhh--CCCCCCEEEeCCc-ceEechhhhcCC-CCceEECC
Confidence            4566666642 35555555566  6777777777433 334555555555 45555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.95  E-value=0.0001  Score=57.65  Aligned_cols=116  Identities=11%  Similarity=-0.045  Sum_probs=59.7

Q ss_pred             cCCCccEEEeccC-CCCccC----hHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccc
Q 022501           31 LFQNLKSLEIVSD-KSDNFS----IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQ  105 (296)
Q Consensus        31 ~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  105 (296)
                      ..++|++|++++| .+..-.    ...+...++|++|++++|.+..-- ...+.......++|++|+++++.. ..-...
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g-~~~l~~~L~~n~~L~~L~L~~N~i-~~~g~~  111 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV-AFALAEMLKVNNTLKSLNVESNFI-SGSGIL  111 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH-HHHHHHHHHHCSSCCEEECCSSCC-CHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH-HHHHHHHHHhCCCcCEEECcCCcC-CHHHHH
Confidence            5677777777776 555211    123445567777777777542210 011111222356777777776532 110000


Q ss_pred             -cCcccccCCCccEEEe--ccCccccc-----cccCccccCCccEEEeccCc
Q 022501          106 -CYKLDSVFQNLETLEI--WWCNNLIN-----LVPSSASFENLTTLEVSYCQ  149 (296)
Q Consensus       106 -~~~~~~~~~~L~~L~l--~~~~~l~~-----~~~~~~~l~~L~~L~l~~c~  149 (296)
                       ....+...++|++|++  .++ .+++     +...+...++|++|+++++.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence             0011445567888888  544 3332     22233345678888887753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.95  E-value=0.00037  Score=57.70  Aligned_cols=35  Identities=23%  Similarity=0.145  Sum_probs=16.6

Q ss_pred             cCCCccEEEeccCcccccc---ccCccccCCccEEEecc
Q 022501          112 VFQNLETLEIWWCNNLINL---VPSSASFENLTTLEVSY  147 (296)
Q Consensus       112 ~~~~L~~L~l~~~~~l~~~---~~~~~~l~~L~~L~l~~  147 (296)
                      .+++|+.|+++++ .+..+   +..+..+++|+.|++++
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~  205 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG  205 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC
Confidence            3455666666553 23222   22233455555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.56  E-value=0.00051  Score=53.58  Aligned_cols=120  Identities=15%  Similarity=0.068  Sum_probs=65.1

Q ss_pred             HHhcCCcccEEEEecc-ccceEeecCccccccCCccccceeEeccccccccccccc-CcccccCCCccEEEeccCccccc
Q 022501           52 FLQRFHNVERLKLRNS-SYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQC-YKLDSVFQNLETLEIWWCNNLIN  129 (296)
Q Consensus        52 ~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~  129 (296)
                      .+...++|++|++++| .+..- ....+.......++|++|+++++.. ..-.... ...+...++|++|++++|. +++
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~-g~~~l~~~L~~~~~L~~L~Ls~n~i-~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~  107 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVP-TLKACAEALKTNTYVKKFSIVGTRS-NDPVAFALAEMLKVNNTLKSLNVESNF-ISG  107 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHH-HHHHHHHHHTTCCSCCEEECTTSCC-CHHHHHHHHHHHHHCSSCCEEECCSSC-CCH
T ss_pred             HHhcCCCCCEEEecCCCCCCHH-HHHHHHHHHHhCCCcCEEECcCCCC-ChHHHHHHHHHHHhCCCcCEEECcCCc-CCH
Confidence            4556788888888877 54321 1111222233467888888887642 2110000 0013345678888888764 332


Q ss_pred             -----cccCccccCCccEEEe--ccCcCccccCC---cccccCCCCccEEEEeCcc
Q 022501          130 -----LVPSSASFENLTTLEV--SYCQRLKNLVS---SSTAKSLVCLMKLRIDGCK  175 (296)
Q Consensus       130 -----~~~~~~~l~~L~~L~l--~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~  175 (296)
                           +...+...+.|++|++  +++ .+++...   ...+...++|++|++++|.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence                 2334445567888888  443 4443211   0123345778888888765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.74  E-value=0.012  Score=42.80  Aligned_cols=54  Identities=9%  Similarity=0.185  Sum_probs=41.7

Q ss_pred             EEEeeccCcc--ccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEecccc
Q 022501           11 ELKLSGKDIT--MICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSY   69 (296)
Q Consensus        11 ~L~L~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   69 (296)
                      .++.++++++  .++ ..    .-++|+.|+|++|.+..++.+.+..+++|++|++.+|.|
T Consensus        12 ~v~Cs~~~L~~~~vP-~~----lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLP-TA----FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSC-SC----CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCC-CC----CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4566666666  542 21    235899999999999999999999999999999998743

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.64  E-value=0.03  Score=48.43  Aligned_cols=125  Identities=10%  Similarity=0.093  Sum_probs=82.2

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +.+|+.+.+.. .+..++...+.  .+.+|+.+.+..+ ...+....+.++.+|+.+.+... ++.+ +..    ....|
T Consensus       216 ~~~l~~i~~~~-~~~~i~~~~f~--~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i-~~~----aF~~c  285 (379)
T 4h09_A          216 GKNLKKITITS-GVTTLGDGAFY--GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTV-PYL----LCSGC  285 (379)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTT--TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEE-CTT----TTTTC
T ss_pred             ccccceeeecc-ceeEEcccccc--CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceec-ccc----ccccc
Confidence            45677776654 34555545566  7899999999654 44666667888999999998754 2332 111    12448


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEec
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVS  146 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~  146 (296)
                      ++|+.+.+.+. .++.++...   +.++.+|+++.+..  .++.+.. .+.++.+|+.+.+.
T Consensus       286 ~~L~~i~l~~~-~i~~I~~~a---F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          286 SNLTKVVMDNS-AIETLEPRV---FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTCCEEEECCT-TCCEECTTT---TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccc-ccceehhhh---hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence            89999988642 344554432   66788999999964  4565654 35567888888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.01  E-value=0.032  Score=40.55  Aligned_cols=38  Identities=18%  Similarity=0.290  Sum_probs=33.9

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD   46 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   46 (296)
                      ++|++|+|++|+++.+....+.  .+++|+.|+|.+|+..
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~--~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLD--ALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGG--GCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChhhhh--hccccCEEEecCCCee
Confidence            3799999999999999877777  8999999999988765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.65
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.59
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.58
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.56
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.55
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.52
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.41
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.4
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.35
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.29
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.04
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.03
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.94
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.94
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.85
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.77
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.67
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.55
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.4
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.32
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.52
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.76
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.43
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.42
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	91.23

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=4.1e-16  Score=131.32  Aligned_cols=224  Identities=17%  Similarity=0.120  Sum_probs=146.6

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .+++++|+|++|+++.+++..+.  .+++|++|++++|.+..+++..+.++++|++|++.+|.++.+..        ...
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~--------~~~   99 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--------KMP   99 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS--------SCC
T ss_pred             CCCCCEEECcCCcCCCcChhHhh--ccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc--------chh
Confidence            47899999999999999766777  89999999999999999887788999999999999998876643        113


Q ss_pred             cccceeEecccccccccc-----------------------cccCcccccCCCccEEEeccCccccccccCccccCCccE
Q 022501           86 TQIKSLKLWELSNLLHIW-----------------------EQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTT  142 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~-----------------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~  142 (296)
                      +.++.|.+.+... ..+.                       ......+..+++|+.+.+.++ .+..++...  +++|+.
T Consensus       100 ~~l~~L~~~~n~l-~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n-~l~~l~~~~--~~~L~~  175 (305)
T d1xkua_         100 KTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTE  175 (305)
T ss_dssp             TTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSC--CTTCSE
T ss_pred             hhhhhhhccccch-hhhhhhhhhccccccccccccccccccCCCccccccccccCccccccC-CccccCccc--CCccCE
Confidence            3444444333211 0000                       000111445667777777765 344444433  677888


Q ss_pred             EEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCC
Q 022501          143 LEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPS  222 (296)
Q Consensus       143 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~  222 (296)
                      |+++++..... .. ..+..++.++.|.+++|. +..+...      .+..+++|++|+++++ +++.++.  .+..+++
T Consensus       176 L~l~~n~~~~~-~~-~~~~~~~~l~~L~~s~n~-l~~~~~~------~~~~l~~L~~L~L~~N-~L~~lp~--~l~~l~~  243 (305)
T d1xkua_         176 LHLDGNKITKV-DA-ASLKGLNNLAKLGLSFNS-ISAVDNG------SLANTPHLRELHLNNN-KLVKVPG--GLADHKY  243 (305)
T ss_dssp             EECTTSCCCEE-CT-GGGTTCTTCCEEECCSSC-CCEECTT------TGGGSTTCCEEECCSS-CCSSCCT--TTTTCSS
T ss_pred             EECCCCcCCCC-Ch-hHhhcccccccccccccc-ccccccc------cccccccceeeecccc-ccccccc--ccccccC
Confidence            88876543332 22 245667778888887763 3333221      2334788888888887 4677654  2456788


Q ss_pred             ccEEeeccCCccccccCCc-------ccCCCcceEEcccCC
Q 022501          223 LEDLFVIDCPKMMIFSFGV-------LSTPRLREVRKNWGL  256 (296)
Q Consensus       223 L~~L~l~~c~~l~~~~~~~-------~~~~~L~~l~l~~~~  256 (296)
                      |++|+++++ +++.++...       ...++|+.++++.+.
T Consensus       244 L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         244 IQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            888888886 576665322       244677888876443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-15  Score=125.83  Aligned_cols=202  Identities=16%  Similarity=0.154  Sum_probs=119.6

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      ..+.+++.++++++.++ ..+    .+++++|++++|.+..++...+.++++|++|++++|.++.+...       ..++
T Consensus        10 ~~~~~v~C~~~~L~~iP-~~l----p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~-------~~l~   77 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALP-PDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------GTLP   77 (266)
T ss_dssp             TTCCEEECTTSCCSSCC-SCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-------SCCT
T ss_pred             CCCeEEEccCCCCCeeC-cCc----CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc-------cccc
Confidence            34556677777777763 222    25789999999988888887888899999999998877665332       2366


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCc
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCL  166 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L  166 (296)
                      +|+.|.++++. +..++..    +..+++|+.|+++++......+.....+.+++.|.+.++ .+..++.. ...     
T Consensus        78 ~L~~L~Ls~N~-l~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~-~~~-----  145 (266)
T d1p9ag_          78 VLGTLDLSHNQ-LQSLPLL----GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPG-LLT-----  145 (266)
T ss_dssp             TCCEEECCSSC-CSSCCCC----TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTT-TTT-----
T ss_pred             ccccccccccc-ccccccc----cccccccccccccccccceeecccccccccccccccccc-ccceeccc-ccc-----
Confidence            77777776543 2222222    344555555555554322222222333444444444432 22222111 122     


Q ss_pred             cEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCC
Q 022501          167 MKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPR  246 (296)
Q Consensus       167 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~  246 (296)
                                                .+++|+.++++++ +++.++... +..+++|++|+++++ .++.+|.++..+++
T Consensus       146 --------------------------~l~~l~~l~l~~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~  196 (266)
T d1p9ag_         146 --------------------------PTPKLEKLSLANN-NLTELPAGL-LNGLENLDTLLLQEN-SLYTIPKGFFGSHL  196 (266)
T ss_dssp             --------------------------TCTTCCEEECTTS-CCSCCCTTT-TTTCTTCCEEECCSS-CCCCCCTTTTTTCC
T ss_pred             --------------------------ccccchhcccccc-cccccCccc-cccccccceeecccC-CCcccChhHCCCCC
Confidence                                      2556666666654 355555433 456777888888876 47778877777788


Q ss_pred             cceEEcccCCcccccCC
Q 022501          247 LREVRKNWGLDKGCWEG  263 (296)
Q Consensus       247 L~~l~l~~~~~~~~~~~  263 (296)
                      |+.|+++  +..|.++.
T Consensus       197 L~~L~L~--~Np~~CdC  211 (266)
T d1p9ag_         197 LPFAFLH--GNPWLCNC  211 (266)
T ss_dssp             CSEEECC--SCCBCCSG
T ss_pred             CCEEEec--CCCCCCCc
Confidence            8888876  44455543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=4e-15  Score=128.69  Aligned_cols=225  Identities=17%  Similarity=0.204  Sum_probs=128.8

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      +.+|++|++++++++.+.  .++  .+++|++|++++|.+..+++  ++++++|++|++++|.+..+.++       ..+
T Consensus        43 l~~l~~L~l~~~~I~~l~--gl~--~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~l-------~~l  109 (384)
T d2omza2          43 LDQVTTLQADRLGIKSID--GVE--YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL-------ANL  109 (384)
T ss_dssp             HTTCCEEECCSSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGG-------TTC
T ss_pred             hCCCCEEECCCCCCCCcc--ccc--cCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccccccc-------ccc
Confidence            567777777777766652  234  67777777777777766653  66777777777777766554332       225


Q ss_pred             cccceeEecccccccccc--------------------------------------------------------------
Q 022501           86 TQIKSLKLWELSNLLHIW--------------------------------------------------------------  103 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~--------------------------------------------------------------  103 (296)
                      ++|+.|.+.++......+                                                              
T Consensus       110 ~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (384)
T d2omza2         110 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD  189 (384)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence            555555544321100000                                                              


Q ss_pred             -------------------cccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501          104 -------------------EQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus       104 -------------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                                         ..........++|++|.+.++ .+++++ .+..+++|+.|+++++. +++..   .+..++
T Consensus       190 ~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~---~~~~~~  263 (384)
T d2omza2         190 ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLA---PLSGLT  263 (384)
T ss_dssp             CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCG---GGTTCT
T ss_pred             ccccccccccceeeccCCccCCCCcccccCCCCEEECCCC-CCCCcc-hhhcccccchhccccCc-cCCCC---cccccc
Confidence                               000000233455666666554 233332 34456777777777653 44432   245667


Q ss_pred             CccEEEEeCccccceecc------------ccc--ccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeecc
Q 022501          165 CLMKLRIDGCKLMTEIIS------------SEG--DVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVID  230 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~------------~~~--~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~  230 (296)
                      +|++|+++++... .+..            ...  ........+++++.|+++++ +++++..   +..+++|++|++++
T Consensus       264 ~L~~L~l~~~~l~-~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-~l~~l~~---l~~l~~L~~L~L~~  338 (384)
T d2omza2         264 KLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFAN  338 (384)
T ss_dssp             TCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCS
T ss_pred             cCCEeeccCcccC-CCCccccccccccccccccccccccccchhcccCeEECCCC-CCCCCcc---cccCCCCCEEECCC
Confidence            7888887765422 1110            000  00122455677788887775 4565542   45788899999988


Q ss_pred             CCccccccCCcccCCCcceEEcccCC
Q 022501          231 CPKMMIFSFGVLSTPRLREVRKNWGL  256 (296)
Q Consensus       231 c~~l~~~~~~~~~~~~L~~l~l~~~~  256 (296)
                      | .++.++. +..+++|++++++++.
T Consensus       339 n-~l~~l~~-l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         339 N-KVSDVSS-LANLTNINWLSAGHNQ  362 (384)
T ss_dssp             S-CCCCCGG-GGGCTTCCEEECCSSC
T ss_pred             C-CCCCChh-HcCCCCCCEEECCCCc
Confidence            7 5777763 5578889999887554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-14  Score=121.20  Aligned_cols=227  Identities=13%  Similarity=0.056  Sum_probs=163.1

Q ss_pred             EEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccce
Q 022501           11 ELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKS   90 (296)
Q Consensus        11 ~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~   90 (296)
                      .++.++.+++.++ ..    -.+++++|+|++|.+..+|...+.++++|++|+++++.+..+.+..     ...++.++.
T Consensus        15 ~v~c~~~~L~~iP-~~----ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~-----~~~~~~~~~   84 (284)
T d1ozna_          15 TTSCPQQGLQAVP-VG----IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-----FTGLALLEQ   84 (284)
T ss_dssp             EEECCSSCCSSCC-TT----CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCE
T ss_pred             EEEcCCCCCCccC-CC----CCCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccc-----ccccccccc
Confidence            3445555566653 22    2367899999999999999888999999999999999877764421     234678888


Q ss_pred             eEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEE
Q 022501           91 LKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLR  170 (296)
Q Consensus        91 L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~  170 (296)
                      +.+.....+..++...   +.++++|++|++.++.............++|+.++++++ .++.++.. .+..+++|+.|+
T Consensus        85 l~~~~~~~~~~l~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~-~f~~~~~L~~L~  159 (284)
T d1ozna_          85 LDLSDNAQLRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDD-TFRDLGNLTHLF  159 (284)
T ss_dssp             EECCSCTTCCCCCTTT---TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEE
T ss_pred             cccccccccccccchh---hcccccCCEEecCCcccccccccccchhcccchhhhccc-cccccChh-Hhccccchhhcc
Confidence            8777777776664332   667899999999987543333445566789999999874 56665543 466788999999


Q ss_pred             EeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc-CCcccCCCcce
Q 022501          171 IDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS-FGVLSTPRLRE  249 (296)
Q Consensus       171 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~  249 (296)
                      ++++. +..+...      .+..+++|+.+.+.++. +..+.+.. +..+++|++|+++++. +..++ ..+..+++|++
T Consensus       160 l~~N~-l~~l~~~------~f~~l~~L~~l~l~~N~-l~~i~~~~-f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         160 LHGNR-ISSVPER------AFRGLHSLDRLLLHQNR-VAHVHPHA-FRDLGRLMTLYLFANN-LSALPTEALAPLRALQY  229 (284)
T ss_dssp             CCSSC-CCEECTT------TTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCE
T ss_pred             cccCc-ccccchh------hhccccccchhhhhhcc-ccccChhH-hhhhhhcccccccccc-cccccccccccccccCE
Confidence            99975 5554432      24458999999999864 66766544 6788999999999975 44544 45568899999


Q ss_pred             EEcccCCcccccCCC
Q 022501          250 VRKNWGLDKGCWEGN  264 (296)
Q Consensus       250 l~l~~~~~~~~~~~~  264 (296)
                      ++++.+  .|.++.+
T Consensus       230 L~l~~N--~l~C~C~  242 (284)
T d1ozna_         230 LRLNDN--PWVCDCR  242 (284)
T ss_dssp             EECCSS--CEECSGG
T ss_pred             EEecCC--CCCCCcc
Confidence            999843  4554433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.62  E-value=8.3e-15  Score=123.65  Aligned_cols=225  Identities=14%  Similarity=0.041  Sum_probs=155.2

Q ss_pred             cceEEEeeccCcccc--ccCCCCCCcCCCccEEEecc-CCCC-ccChHHHhcCCcccEEEEeccccceEeecCccccccC
Q 022501            8 NLEELKLSGKDITMI--CHDHLPKHLFQNLKSLEIVS-DKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAG   83 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   83 (296)
                      ++.+|+|+++++.+.  .+..++  .+++|++|++++ |... .+|. .+.++++|++|++++|.+.+..+..     ..
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~--~L~~L~~L~Ls~~N~l~g~iP~-~i~~L~~L~~L~Ls~N~l~~~~~~~-----~~  122 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDF-----LS  122 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGG-----GG
T ss_pred             EEEEEECCCCCCCCCCCCChHHh--cCcccccccccccccccccccc-ccccccccchhhhcccccccccccc-----cc
Confidence            689999999877653  235566  899999999976 4443 6776 5788999999999999887765422     24


Q ss_pred             CccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCc-cEEEeccCcCccccCCcccccC
Q 022501           84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENL-TTLEVSYCQRLKNLVSSSTAKS  162 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L-~~L~l~~c~~l~~~~~~~~~~~  162 (296)
                      .+++|+.+.++++.....++..    +..++.|+.++++++.....+|.....+.++ +.+.++++ .+....+. ....
T Consensus       123 ~~~~L~~l~l~~N~~~~~~p~~----l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~~-~~~~  196 (313)
T d1ogqa_         123 QIKTLVTLDFSYNALSGTLPPS----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPP-TFAN  196 (313)
T ss_dssp             GCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCG-GGGG
T ss_pred             chhhhcccccccccccccCchh----hccCcccceeeccccccccccccccccccccccccccccc-cccccccc-cccc
Confidence            5888999999887666555554    7788999999999876666777766666665 66777654 44433322 2333


Q ss_pred             CCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501          163 LVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL  242 (296)
Q Consensus       163 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  242 (296)
                      + ....+++..+.....++.....       +++++.+++.++. +.....  ....+++|+.|++++|.....+|..+.
T Consensus       197 l-~~~~l~l~~~~~~~~~~~~~~~-------~~~l~~l~~~~~~-l~~~~~--~~~~~~~L~~L~Ls~N~l~g~iP~~l~  265 (313)
T d1ogqa_         197 L-NLAFVDLSRNMLEGDASVLFGS-------DKNTQKIHLAKNS-LAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             C-CCSEEECCSSEEEECCGGGCCT-------TSCCSEEECCSSE-ECCBGG--GCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             c-cccccccccccccccccccccc-------ccccccccccccc-cccccc--ccccccccccccCccCeecccCChHHh
Confidence            3 3446777666554444443333       7788888888764 333222  234678888888888754447888888


Q ss_pred             cCCCcceEEcccCCc
Q 022501          243 STPRLREVRKNWGLD  257 (296)
Q Consensus       243 ~~~~L~~l~l~~~~~  257 (296)
                      .+++|++|+++.+..
T Consensus       266 ~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         266 QLKFLHSLNVSFNNL  280 (313)
T ss_dssp             GCTTCCEEECCSSEE
T ss_pred             CCCCCCEEECcCCcc
Confidence            888888888876543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=2.2e-14  Score=123.96  Aligned_cols=220  Identities=19%  Similarity=0.199  Sum_probs=144.4

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeec---------
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSN---------   75 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---------   75 (296)
                      .+++|++|++++|+++++++  +.  .+++|++|++++|.+..+++  ++++++|+.|++.++.+......         
T Consensus        64 ~L~nL~~L~Ls~N~l~~l~~--l~--~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~  137 (384)
T d2omza2          64 YLNNLTQINFSNNQLTDITP--LK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL  137 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GT--TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cCCCCCEEeCcCCcCCCCcc--cc--CCcccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence            48999999999999999853  55  89999999999999887763  68899999999987643322110         


Q ss_pred             -------------------------------------------------Ccccccc----------------------CC
Q 022501           76 -------------------------------------------------GEVEKQA----------------------GM   84 (296)
Q Consensus        76 -------------------------------------------------~~~~~~~----------------------~~   84 (296)
                                                                       .......                      ..
T Consensus       138 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~  217 (384)
T d2omza2         138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI  217 (384)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccc
Confidence                                                             0000011                      12


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCC--------
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVS--------  156 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--------  156 (296)
                      +++|+.|.++++. ++.++     .+..+++|+.+.+.++. +..++. +..+++|+.|+++++. +..+..        
T Consensus       218 ~~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~  288 (384)
T d2omza2         218 LTNLDELSLNGNQ-LKDIG-----TLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-ISNISPLAGLTALT  288 (384)
T ss_dssp             CTTCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCS
T ss_pred             cCCCCEEECCCCC-CCCcc-----hhhcccccchhccccCc-cCCCCc-ccccccCCEeeccCcc-cCCCCccccccccc
Confidence            3444555554432 22221     25667889999988864 444443 4557788888887643 222211        


Q ss_pred             -----------cccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccE
Q 022501          157 -----------SSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLED  225 (296)
Q Consensus       157 -----------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~  225 (296)
                                 ......+++++.|+++++. ++.+.        .+..+++|++|+++++ ++++++.   +..+++|++
T Consensus       289 ~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~-l~~l~--------~l~~l~~L~~L~L~~n-~l~~l~~---l~~l~~L~~  355 (384)
T d2omza2         289 NLELNENQLEDISPISNLKNLTYLTLYFNN-ISDIS--------PVSSLTKLQRLFFANN-KVSDVSS---LANLTNINW  355 (384)
T ss_dssp             EEECCSSCCSCCGGGGGCTTCSEEECCSSC-CSCCG--------GGGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCE
T ss_pred             cccccccccccccccchhcccCeEECCCCC-CCCCc--------ccccCCCCCEEECCCC-CCCCChh---HcCCCCCCE
Confidence                       0123344556666666553 23222        1345999999999998 5777652   467999999


Q ss_pred             EeeccCCccccccCCcccCCCcceEEccc
Q 022501          226 LFVIDCPKMMIFSFGVLSTPRLREVRKNW  254 (296)
Q Consensus       226 L~l~~c~~l~~~~~~~~~~~~L~~l~l~~  254 (296)
                      |++++| +++.++. +..+++|+.|+++.
T Consensus       356 L~l~~N-~l~~l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         356 LSAGHN-QISDLTP-LANLTRITQLGLND  382 (384)
T ss_dssp             EECCSS-CCCBCGG-GTTCTTCSEEECCC
T ss_pred             EECCCC-cCCCChh-hccCCCCCEeeCCC
Confidence            999887 5777764 55889999999963

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=9.6e-15  Score=121.58  Aligned_cols=204  Identities=17%  Similarity=0.112  Sum_probs=152.2

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEecc-ccceEeecCccccccCC
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNS-SYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~   84 (296)
                      .+++++|+|++|+++.+++..+.  .+++|++|+++++.+..++...+..++.++.+.+..+ .+..+.+     .....
T Consensus        31 p~~~~~L~Ls~N~i~~i~~~~f~--~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~-----~~~~~  103 (284)
T d1ozna_          31 PAASQRIFLHGNRISHVPAASFR--ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-----ATFHG  103 (284)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT-----TTTTT
T ss_pred             CCCCCEEECcCCcCCCCCHHHhh--ccccccccccccccccccccccccccccccccccccccccccccc-----hhhcc
Confidence            35789999999999999877777  8999999999999999888878888899999887644 3333321     22355


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSL  163 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l  163 (296)
                      +++|+.|.++++.. ..++...   ....++|+.+++.++ .++.++. .+..+++|++|+++++ .+..+... .+.++
T Consensus       104 l~~L~~L~l~~n~~-~~~~~~~---~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~~-~f~~l  176 (284)
T d1ozna_         104 LGRLHTLHLDRCGL-QELGPGL---FRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPER-AFRGL  176 (284)
T ss_dssp             CTTCCEEECTTSCC-CCCCTTT---TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTC
T ss_pred             cccCCEEecCCccc-ccccccc---cchhcccchhhhccc-cccccChhHhccccchhhcccccC-cccccchh-hhccc
Confidence            89999999998754 2332221   556788999999985 5666654 4567889999999986 56666543 56788


Q ss_pred             CCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCC
Q 022501          164 VCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCP  232 (296)
Q Consensus       164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~  232 (296)
                      ++|+++.+.++....-.+..       +..+++|++|++++.. +..++... +..+++|++|++++++
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~-------f~~l~~L~~L~l~~N~-i~~~~~~~-~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHA-------FRDLGRLMTLYLFANN-LSALPTEA-LAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTT-------TTTCTTCCEEECCSSC-CSCCCHHH-HTTCTTCCEEECCSSC
T ss_pred             cccchhhhhhccccccChhH-------hhhhhhcccccccccc-cccccccc-cccccccCEEEecCCC
Confidence            99999999998654322332       3448999999999865 55554432 5678999999999864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.59  E-value=4.7e-15  Score=125.17  Aligned_cols=223  Identities=14%  Similarity=0.058  Sum_probs=158.0

Q ss_pred             cccceEEEeec-cCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            6 IANLEELKLSG-KDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         6 l~~L~~L~L~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      +++|++|+|++ |++.+..|..++  .+++|++|++++|.+...+...+..+++|+.+++..|.+....+     .....
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~--~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p-----~~l~~  147 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIA--KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-----PSISS  147 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGG--GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCC-----GGGGG
T ss_pred             Cccccccccccccccccccccccc--cccccchhhhccccccccccccccchhhhcccccccccccccCc-----hhhcc
Confidence            78999999998 788754456677  89999999999999988777788899999999999985544322     33456


Q ss_pred             ccccceeEecccccccccccccCcccccCCCc-cEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNL-ETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSL  163 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L-~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l  163 (296)
                      +++|+.+.+++......++..    +..+..+ +.+.+.++......+..+..+ ....+++.++......+  .....+
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~----~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~~~~~~~--~~~~~~  220 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDS----YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS--VLFGSD  220 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGG----GGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCG--GGCCTT
T ss_pred             Ccccceeeccccccccccccc----ccccccccccccccccccccccccccccc-ccccccccccccccccc--cccccc
Confidence            899999999987654455444    4455555 777777654333444444433 44567777665433332  345678


Q ss_pred             CCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcc-eecCCCccccCCCccEEeeccCCccccccCCcc
Q 022501          164 VCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLT-SFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVL  242 (296)
Q Consensus       164 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~-~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  242 (296)
                      ++++.+.+.++.....++. .+       .+++|+.|+++++. ++ .+|.  .+..+++|++|+++++..-..+|.. .
T Consensus       221 ~~l~~l~~~~~~l~~~~~~-~~-------~~~~L~~L~Ls~N~-l~g~iP~--~l~~L~~L~~L~Ls~N~l~g~iP~~-~  288 (313)
T d1ogqa_         221 KNTQKIHLAKNSLAFDLGK-VG-------LSKNLNGLDLRNNR-IYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQG-G  288 (313)
T ss_dssp             SCCSEEECCSSEECCBGGG-CC-------CCTTCCEEECCSSC-CEECCCG--GGGGCTTCCEEECCSSEEEEECCCS-T
T ss_pred             ccccccccccccccccccc-cc-------cccccccccCccCe-ecccCCh--HHhCCCCCCEEECcCCcccccCCCc-c
Confidence            9999999998865443332 22       27899999999875 55 4554  3578999999999997533478864 4


Q ss_pred             cCCCcceEEccc
Q 022501          243 STPRLREVRKNW  254 (296)
Q Consensus       243 ~~~~L~~l~l~~  254 (296)
                      .+++|+.+++..
T Consensus       289 ~L~~L~~l~l~~  300 (313)
T d1ogqa_         289 NLQRFDVSAYAN  300 (313)
T ss_dssp             TGGGSCGGGTCS
T ss_pred             cCCCCCHHHhCC
Confidence            778888887754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-16  Score=133.42  Aligned_cols=186  Identities=16%  Similarity=0.174  Sum_probs=107.6

Q ss_pred             cCCCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcc
Q 022501           31 LFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKL  109 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  109 (296)
                      ...+|++|++++|.+. .....++.++++|++|.+.+|.+....     ......+++|++|++++|..+.+.....  .
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~-----~~~l~~~~~L~~L~Ls~c~~itd~~l~~--l  116 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-----VNTLAKNSNLVRLNLSGCSGFSEFALQT--L  116 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHH-----HHHHTTCTTCSEEECTTCBSCCHHHHHH--H
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHH-----HHHHhcCCCCcCccccccccccccccch--h
Confidence            4567888888777655 223345677888888888877542211     1112346778888888777665321110  0


Q ss_pred             cccCCCccEEEeccCccccccc--cC-ccccCCccEEEeccCc-CccccCCcccccCCCCccEEEEeCcccccee-cccc
Q 022501          110 DSVFQNLETLEIWWCNNLINLV--PS-SASFENLTTLEVSYCQ-RLKNLVSSSTAKSLVCLMKLRIDGCKLMTEI-ISSE  184 (296)
Q Consensus       110 ~~~~~~L~~L~l~~~~~l~~~~--~~-~~~l~~L~~L~l~~c~-~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~  184 (296)
                      ...+++|++|++++|..+.+..  .. ....++|+.|++++|. .+++......+.++++|++|++++|..+++. +.. 
T Consensus       117 ~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~-  195 (284)
T d2astb2         117 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-  195 (284)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-
T ss_pred             hHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh-
Confidence            2456778888887776654321  11 1224677777777763 3443322223455677777777777655421 111 


Q ss_pred             cccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccC
Q 022501          185 GDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDC  231 (296)
Q Consensus       185 ~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c  231 (296)
                            ...+++|++|++++|..+++-.... ...+|+|+.|++++|
T Consensus       196 ------l~~~~~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~~  235 (284)
T d2astb2         196 ------FFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ------GGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTS
T ss_pred             ------hcccCcCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeCC
Confidence                  2236777777777777665543322 345677777777776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.4e-14  Score=116.51  Aligned_cols=187  Identities=18%  Similarity=0.202  Sum_probs=129.6

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD  110 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  110 (296)
                      .+.+|+.|++.+|.+..++  .++++++|++|++++|.+..+.++       ..+++|+.+.++++. ++.++.     +
T Consensus        39 ~l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~l-------~~l~~l~~l~~~~n~-~~~i~~-----l  103 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAPL-------KNLTKITELELSGNP-LKNVSA-----I  103 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGGG-------TTCCSCCEEECCSCC-CSCCGG-----G
T ss_pred             HcCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeeccccc-------ccccccccccccccc-cccccc-----c
Confidence            6788888888888877775  367888888888888876665443       337888888887664 233321     5


Q ss_pred             ccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccc
Q 022501          111 SVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEED  190 (296)
Q Consensus       111 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  190 (296)
                      ..+++|+.+.+.++.... .. .+...+.++.+.++++. +...   ......++|++|.+.+|.. .....        
T Consensus       104 ~~l~~L~~l~l~~~~~~~-~~-~~~~~~~~~~l~~~~~~-~~~~---~~~~~~~~L~~L~l~~n~~-~~~~~--------  168 (227)
T d1h6ua2         104 AGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQ-ITNI---SPLAGLTNLQYLSIGNAQV-SDLTP--------  168 (227)
T ss_dssp             TTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSC-CCCC---GGGGGCTTCCEEECCSSCC-CCCGG--------
T ss_pred             cccccccccccccccccc-cc-hhccccchhhhhchhhh-hchh---hhhcccccccccccccccc-ccchh--------
Confidence            567888888888764332 21 23346778888887654 3222   1346678899999888753 22221        


Q ss_pred             cccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcc
Q 022501          191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKN  253 (296)
Q Consensus       191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~  253 (296)
                      +..+++|++|+++++ ++++++.   +..+++|++|++++| +++.++. +..+++|+.|+++
T Consensus       169 l~~l~~L~~L~Ls~n-~l~~l~~---l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         169 LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEE
T ss_pred             hcccccceecccCCC-ccCCChh---hcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEee
Confidence            234889999999887 5777654   457899999999998 5878764 4588999999885

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7e-15  Score=121.28  Aligned_cols=175  Identities=14%  Similarity=0.059  Sum_probs=133.9

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      +++++|+|++|+++.+.+..+.  .+++|++|++++|.+..++.  ++.+++|++|++++|.+.....      ....++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~--~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~~------~~~~l~  100 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL------LGQTLP  100 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCCC------CTTTCT
T ss_pred             cCCCEEECcCCcCCCcCHHHhh--cccccccccccccccccccc--cccccccccccccccccccccc------cccccc
Confidence            5799999999999999777777  89999999999999887763  4689999999999997765422      345689


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCccccccccC-ccccCCccEEEeccCcCccccCCcccccCCCC
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPS-SASFENLTTLEVSYCQRLKNLVSSSTAKSLVC  165 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~  165 (296)
                      +|+.|.++++... .++...   ...+++++.|.+.++ .+..++.. +..+++++.++++++ .++.++.. .+..+++
T Consensus       101 ~L~~L~l~~~~~~-~~~~~~---~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~-~~~~l~~  173 (266)
T d1p9ag_         101 ALTVLDVSFNRLT-SLPLGA---LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAG-LLNGLEN  173 (266)
T ss_dssp             TCCEEECCSSCCC-CCCSST---TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTT-TTTTCTT
T ss_pred             ccccccccccccc-eeeccc---ccccccccccccccc-ccceeccccccccccchhcccccc-cccccCcc-ccccccc
Confidence            9999999987543 332221   556789999999986 45555543 456889999999975 56665543 4677899


Q ss_pred             ccEEEEeCccccceecccccccccccccCCccceeeccCCc
Q 022501          166 LMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLD  206 (296)
Q Consensus       166 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  206 (296)
                      |++|++++|. ++.++.+...       +++|+.|++++.|
T Consensus       174 L~~L~Ls~N~-L~~lp~~~~~-------~~~L~~L~L~~Np  206 (266)
T d1p9ag_         174 LDTLLLQENS-LYTIPKGFFG-------SHLLPFAFLHGNP  206 (266)
T ss_dssp             CCEEECCSSC-CCCCCTTTTT-------TCCCSEEECCSCC
T ss_pred             cceeecccCC-CcccChhHCC-------CCCCCEEEecCCC
Confidence            9999999875 5566654333       7888888888755

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=6e-15  Score=118.78  Aligned_cols=188  Identities=19%  Similarity=0.200  Sum_probs=141.1

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+.+|++|.+.+++++.+.  .+.  .+++|++|++++|.+..+++  +..+++|+++.+.+|.++.+..+       ..
T Consensus        39 ~l~~L~~L~l~~~~i~~l~--~l~--~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~~l-------~~  105 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE--GVQ--YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAI-------AG  105 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGG--GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGGG-------TT
T ss_pred             HcCCcCEEECCCCCCCcch--hHh--cCCCCcEeecCCceeecccc--ccccccccccccccccccccccc-------cc
Confidence            3789999999999998873  355  89999999999998887653  68899999999999876654322       34


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCC
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLV  164 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~  164 (296)
                      +++|+.+.+.++......      .+...+.++.+.+..+.... .. .+...++|+.|+++++. +.+..   .+.+++
T Consensus       106 l~~L~~l~l~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~L~~L~l~~n~-~~~~~---~l~~l~  173 (227)
T d1h6ua2         106 LQSIKTLDLTSTQITDVT------PLAGLSNLQVLYLDLNQITN-IS-PLAGLTNLQYLSIGNAQ-VSDLT---PLANLS  173 (227)
T ss_dssp             CTTCCEEECTTSCCCCCG------GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSC-CCCCG---GGTTCT
T ss_pred             cccccccccccccccccc------hhccccchhhhhchhhhhch-hh-hhccccccccccccccc-cccch---hhcccc
Confidence            899999999877543221      14556788999987764332 22 34557899999998764 44332   357889


Q ss_pred             CccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeecc
Q 022501          165 CLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVID  230 (296)
Q Consensus       165 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~  230 (296)
                      +|++|++++|. ++++..        +..+++|++|+++++ ++++++.   +..+++|+.|++++
T Consensus       174 ~L~~L~Ls~n~-l~~l~~--------l~~l~~L~~L~Ls~N-~lt~i~~---l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         174 KLTTLKADDNK-ISDISP--------LASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLTN  226 (227)
T ss_dssp             TCCEEECCSSC-CCCCGG--------GGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEEE
T ss_pred             cceecccCCCc-cCCChh--------hcCCCCCCEEECcCC-cCCCCcc---cccCCCCCEEEeeC
Confidence            99999999984 555443        334899999999998 5888764   45889999999864

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=2.3e-13  Score=114.10  Aligned_cols=205  Identities=13%  Similarity=0.154  Sum_probs=149.6

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeec---------
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSN---------   75 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---------   75 (296)
                      .+++|++|+++++.+..+.+..+.  .+++|+.|++.+|.+..+|..   ..+.++.|.+.++.+..+...         
T Consensus        53 ~l~~L~~L~l~~n~~~~i~~~~f~--~l~~L~~L~l~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~  127 (305)
T d1xkua_          53 NLKNLHTLILINNKISKISPGAFA--PLVKLERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMI  127 (305)
T ss_dssp             TCTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred             ccccccccccccccccccchhhhh--CCCccCEecccCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhcccccc
Confidence            378999999999999998777788  899999999999998888753   346788888887765554320         


Q ss_pred             ------------CccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCccccCCccEE
Q 022501           76 ------------GEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSSASFENLTTL  143 (296)
Q Consensus        76 ------------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L  143 (296)
                                  .........+++|+.+.+.++. +..++.      ..+++|++|++.++......+..+..++.++.|
T Consensus       128 ~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L  200 (305)
T d1xkua_         128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKL  200 (305)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred             ccccccccccccCCCccccccccccCccccccCC-ccccCc------ccCCccCEEECCCCcCCCCChhHhhcccccccc
Confidence                        0011122346678888887654 333332      236789999999977666666667778999999


Q ss_pred             EeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCC-----ccc
Q 022501          144 EVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGN-----CTF  218 (296)
Q Consensus       144 ~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~-----~~~  218 (296)
                      +++++ .+.+.... ++.++++|++|++++|. ++.++...       ..+++|++|+++++ +++++....     ...
T Consensus       201 ~~s~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-L~~lp~~l-------~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~  269 (305)
T d1xkua_         201 GLSFN-SISAVDNG-SLANTPHLRELHLNNNK-LVKVPGGL-------ADHKYIQVVYLHNN-NISAIGSNDFCPPGYNT  269 (305)
T ss_dssp             ECCSS-CCCEECTT-TGGGSTTCCEEECCSSC-CSSCCTTT-------TTCSSCCEEECCSS-CCCCCCTTSSSCSSCCT
T ss_pred             ccccc-cccccccc-cccccccceeeeccccc-cccccccc-------ccccCCCEEECCCC-ccCccChhhccCcchhc
Confidence            99986 46665443 56788999999999984 55665433       34899999999996 477775322     234


Q ss_pred             cCCCccEEeeccCC
Q 022501          219 KFPSLEDLFVIDCP  232 (296)
Q Consensus       219 ~~~~L~~L~l~~c~  232 (296)
                      ..++|+.|.+.+++
T Consensus       270 ~~~~L~~L~L~~N~  283 (305)
T d1xkua_         270 KKASYSGVSLFSNP  283 (305)
T ss_dssp             TSCCCSEEECCSSS
T ss_pred             ccCCCCEEECCCCc
Confidence            56889999999986

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.8e-16  Score=129.68  Aligned_cols=213  Identities=17%  Similarity=0.144  Sum_probs=140.8

Q ss_pred             cccceEEEeeccCccccc-cCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            6 IANLEELKLSGKDITMIC-HDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      ..+|++|+++++.+..-. ...+.  .+++|++|++.+|.........+.++++|++|++++|  ..+. ..++......
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~--~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c--~~it-d~~l~~l~~~  119 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC--SGFS-EFALQTLLSS  119 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC--BSCC-HHHHHHHHHH
T ss_pred             CCCCCEEECCCCccCHHHHHHHHH--hCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc--cccc-ccccchhhHH
Confidence            468999999987665432 12244  7899999999999776444456788999999999998  2221 1222223345


Q ss_pred             ccccceeEecccccccccccccCcccccCCCccEEEeccCcc-ccc--cccCccccCCccEEEeccCcCccccCCccccc
Q 022501           85 LTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNN-LIN--LVPSSASFENLTTLEVSYCQRLKNLVSSSTAK  161 (296)
Q Consensus        85 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  161 (296)
                      +++|++|++++|..+.+-.... ......++|+.|.+.+|.. +.+  +......+++|++|++++|..+++.... .+.
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~-~l~  197 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFF  197 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGG
T ss_pred             HHhccccccccccccccccchh-hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhh-hhc
Confidence            8999999999998765421110 0023357899999998743 332  2223456899999999999988765433 356


Q ss_pred             CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccc
Q 022501          162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIF  237 (296)
Q Consensus       162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~  237 (296)
                      .+++|++|++++|..+.+...      ..+..+|+|+.|++.+|..-..+..  ....+|.|+   + +|..++.+
T Consensus       198 ~~~~L~~L~L~~C~~i~~~~l------~~L~~~~~L~~L~l~~~~~d~~l~~--l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         198 QLNYLQHLSLSRCYDIIPETL------LELGEIPTLKTLQVFGIVPDGTLQL--LKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             GCTTCCEEECTTCTTCCGGGG------GGGGGCTTCCEEECTTSSCTTCHHH--HHHHSTTSE---E-SCCCSCCT
T ss_pred             ccCcCCEEECCCCCCCChHHH------HHHhcCCCCCEEeeeCCCCHHHHHH--HHHhCcccc---c-cCccCCCC
Confidence            789999999999987653211      1133489999999998732222211  223566665   3 55555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.8e-13  Score=108.31  Aligned_cols=219  Identities=15%  Similarity=0.100  Sum_probs=144.4

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK   89 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~   89 (296)
                      +.++.++.+++.++ ..    -.+++++|++++|.+..++...|.++++|++|++++|.+...++...+.    .+++++
T Consensus        11 ~~i~c~~~~l~~iP-~~----l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~----~l~~l~   81 (242)
T d1xwdc1          11 RVFLCQESKVTEIP-SD----LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS----NLPKLH   81 (242)
T ss_dssp             SEEEEESCSCSSCC-SC----SCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE----SCTTCC
T ss_pred             CEEEEeCCCCCCcC-CC----CCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc----cccccc
Confidence            56777777777763 22    3468999999999999998888899999999999999776665543333    388889


Q ss_pred             eeEecccccccccccccCcccccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCCcccccCCCCcc
Q 022501           90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLM  167 (296)
Q Consensus        90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~  167 (296)
                      ++.+..+..+..++...   +..+++|+.+.+.++. +...+.  ....+..+..+... +..+..+......+....++
T Consensus        82 ~l~~~~~n~l~~~~~~~---~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~-n~~l~~i~~~~~~~~~~~l~  156 (242)
T d1xwdc1          82 EIRIEKANNLLYINPEA---FQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD-NINIHTIERNSFVGLSFESV  156 (242)
T ss_dssp             EEEEECCTTCCEECTTS---EECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEES-CTTCCEECTTSSTTSBSSCE
T ss_pred             ccccccccccccccccc---ccccccccccccchhh-hccccccccccccccccccccc-ccccccccccccccccccce
Confidence            99888777766654432   5678899999999864 444433  12223344433333 33455554332222334788


Q ss_pred             EEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCC-cccCCC
Q 022501          168 KLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFG-VLSTPR  246 (296)
Q Consensus       168 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~  246 (296)
                      .+.++++. ++.+......       .++++++......+++.++... +.++++|++|+++++ +++.+|.. +..+++
T Consensus       157 ~L~l~~n~-l~~i~~~~~~-------~~~l~~~~~l~~n~l~~l~~~~-f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~  226 (242)
T d1xwdc1         157 ILWLNKNG-IQEIHNCAFN-------GTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRT-RIHSLPSYGLENLKK  226 (242)
T ss_dssp             EEECCSSC-CCEECTTTTT-------TCCEEEEECTTCTTCCCCCTTT-TTTSCCCSEEECTTS-CCCCCCSSSCTTCCE
T ss_pred             eeeccccc-cccccccccc-------chhhhccccccccccccccHHH-hcCCCCCCEEECCCC-cCCccCHHHHcCCcc
Confidence            88887643 4444443222       5677777666667788886644 567899999999986 47777764 345555


Q ss_pred             cceEEc
Q 022501          247 LREVRK  252 (296)
Q Consensus       247 L~~l~l  252 (296)
                      |+.+++
T Consensus       227 L~~l~~  232 (242)
T d1xwdc1         227 LRARST  232 (242)
T ss_dssp             EESSSE
T ss_pred             cccCcC
Confidence            555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=6.2e-14  Score=110.41  Aligned_cols=162  Identities=15%  Similarity=0.199  Sum_probs=88.3

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD  110 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  110 (296)
                      .++++++|++.++.+..++  .++.+++|++|++++|.+..+.+       ...+++|+.|.++++.. ..++.     +
T Consensus        38 ~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~~-------l~~l~~L~~L~l~~n~~-~~~~~-----l  102 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP-------LKNLTKLVDILMNNNQI-ADITP-----L  102 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCC-CCCGG-----G
T ss_pred             HhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCccc-------ccCCccccccccccccc-ccccc-----c
Confidence            4566666666666665554  24566666666666665554432       12366666666665432 22221     4


Q ss_pred             ccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccc
Q 022501          111 SVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEED  190 (296)
Q Consensus       111 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  190 (296)
                      ..++.|+.+.+.++.... . ..+..+++|+.|+++++. +..+.   .+..+++|++|++.+|. ++.+..        
T Consensus       103 ~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~-l~~~~---~l~~~~~L~~L~l~~n~-l~~l~~--------  167 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLELSSNT-ISDIS---ALSGLTSLQQLNFSSNQ-VTDLKP--------  167 (199)
T ss_dssp             TTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSC-CCCCG---GGTTCTTCSEEECCSSC-CCCCGG--------
T ss_pred             cccccccccccccccccc-c-cccchhhhhHHhhhhhhh-hcccc---ccccccccccccccccc-ccCCcc--------
Confidence            456666777666554332 1 123446667777776543 33332   34566677777776653 333321        


Q ss_pred             cccCCccceeeccCCcCcceecCCCccccCCCccEE
Q 022501          191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDL  226 (296)
Q Consensus       191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L  226 (296)
                      +..+++|++|+++++ ++++++.   +..+++|+.|
T Consensus       168 l~~l~~L~~L~ls~N-~i~~i~~---l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSN-KVSDISV---LAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCC-CCCCCcc---ccCCCCCCcC
Confidence            223677777777776 3666532   3456666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.45  E-value=3.3e-13  Score=107.07  Aligned_cols=166  Identities=14%  Similarity=0.158  Sum_probs=110.2

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD  110 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  110 (296)
                      .+.+|+.|++.+|.+..++.  ++.+++|++|++++|.+..+.+.       ..+++|+.|.++++. ++.++.     +
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~~-------~~l~~L~~L~l~~n~-i~~l~~-----l  108 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPL-------ANLKNLGWLFLDENK-VKDLSS-----L  108 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGGG-------TTCTTCCEEECCSSC-CCCGGG-----G
T ss_pred             HhcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCcccc-------ccCcccccccccccc-cccccc-----c
Confidence            46778888888777776652  56788888888888766654332       347788888887653 444432     5


Q ss_pred             ccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccc
Q 022501          111 SVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEED  190 (296)
Q Consensus       111 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~  190 (296)
                      ..+++|+.|.+.++.. ..++ .+..+++++.+.++++ .+.+..   ....+++|+++++++|. +..+..        
T Consensus       109 ~~l~~L~~L~l~~~~~-~~~~-~l~~l~~l~~l~~~~n-~l~~~~---~~~~l~~L~~l~l~~n~-l~~i~~--------  173 (210)
T d1h6ta2         109 KDLKKLKSLSLEHNGI-SDIN-GLVHLPQLESLYLGNN-KITDIT---VLSRLTKLDTLSLEDNQ-ISDIVP--------  173 (210)
T ss_dssp             TTCTTCCEEECTTSCC-CCCG-GGGGCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSC-CCCCGG--------
T ss_pred             cccccccccccccccc-cccc-cccccccccccccccc-cccccc---ccccccccccccccccc-cccccc--------
Confidence            5677888888877643 3332 3455678888888764 344432   35667888888888874 333332        


Q ss_pred             cccCCccceeeccCCcCcceecCCCccccCCCccEEeecc
Q 022501          191 EIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVID  230 (296)
Q Consensus       191 ~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~  230 (296)
                      +..+++|++|+++++ .+++++.   +..+++|+.|++++
T Consensus       174 l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEE
T ss_pred             ccCCCCCCEEECCCC-CCCCChh---hcCCCCCCEEEccC
Confidence            223788888888887 4677642   45788888888864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=9.3e-13  Score=104.43  Aligned_cols=165  Identities=18%  Similarity=0.172  Sum_probs=112.7

Q ss_pred             cCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCc
Q 022501           55 RFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSS  134 (296)
Q Consensus        55 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  134 (296)
                      .+.+|++|++.+|.++.+.   ++    ..+++|++|.++++. +..++.     +..+++|+.|+++++ .+++++ .+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~---~l----~~l~~L~~L~L~~n~-i~~l~~-----~~~l~~L~~L~l~~n-~i~~l~-~l  108 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ---GI----QYLPNVTKLFLNGNK-LTDIKP-----LANLKNLGWLFLDEN-KVKDLS-SL  108 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT---TG----GGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCGG-GG
T ss_pred             HhcCccEEECcCCCCCCch---hH----hhCCCCCEEeCCCcc-ccCccc-----cccCccccccccccc-cccccc-cc
Confidence            4678888888888766543   22    338888888888763 444432     556788888888876 456555 45


Q ss_pred             cccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCC
Q 022501          135 ASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSG  214 (296)
Q Consensus       135 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~  214 (296)
                      ..+++|+.|+++++.. ..+   ..+..++.++.+.++++.. .....        ...+++|+.++++++. ++++.. 
T Consensus       109 ~~l~~L~~L~l~~~~~-~~~---~~l~~l~~l~~l~~~~n~l-~~~~~--------~~~l~~L~~l~l~~n~-l~~i~~-  173 (210)
T d1h6ta2         109 KDLKKLKSLSLEHNGI-SDI---NGLVHLPQLESLYLGNNKI-TDITV--------LSRLTKLDTLSLEDNQ-ISDIVP-  173 (210)
T ss_dssp             TTCTTCCEEECTTSCC-CCC---GGGGGCTTCCEEECCSSCC-CCCGG--------GGGCTTCSEEECCSSC-CCCCGG-
T ss_pred             cccccccccccccccc-ccc---ccccccccccccccccccc-ccccc--------cccccccccccccccc-cccccc-
Confidence            6678888888887653 333   2356778888888877653 22221        2237888888888763 566543 


Q ss_pred             CccccCCCccEEeeccCCccccccCCcccCCCcceEEcc
Q 022501          215 NCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKN  253 (296)
Q Consensus       215 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~  253 (296)
                        +..+++|++|++++| .++.++. +..+++|+.|+++
T Consensus       174 --l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         174 --LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELF  208 (210)
T ss_dssp             --GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEE
T ss_pred             --ccCCCCCCEEECCCC-CCCCChh-hcCCCCCCEEEcc
Confidence              356788999998887 5777763 4577888888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.3e-12  Score=101.54  Aligned_cols=208  Identities=13%  Similarity=0.059  Sum_probs=133.9

Q ss_pred             cccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEEEecc-ccceEeecCccccccC
Q 022501            6 IANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNS-SYKEIFSNGEVEKQAG   83 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~   83 (296)
                      ++++++|++++|.++.++...+.  .+++|++|++++|.+. .++...+..+++++++.+..+ .+....+ ..    ..
T Consensus        28 ~~~l~~L~Ls~n~i~~l~~~~f~--~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-~~----~~  100 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQKGAFS--GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EA----FQ  100 (242)
T ss_dssp             CSCCSEEEEESCCCCEECTTTTT--TCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT-TS----EE
T ss_pred             CCCCCEEECcCCcCCccChhHhh--ccchhhhhhhccccccceeecccccccccccccccccccccccccc-cc----cc
Confidence            46899999999999998766777  8999999999999876 466667888999999998764 3333321 11    24


Q ss_pred             CccccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-Ccccc-CCccEEEeccCcCccccCCccccc
Q 022501           84 MLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASF-ENLTTLEVSYCQRLKNLVSSSTAK  161 (296)
Q Consensus        84 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~  161 (296)
                      .+++|+++.+.++. +...+..  .....+..+..+...+ ..+..++. .+..+ ..++.|++.+ +.++.+...  +.
T Consensus       101 ~l~~L~~l~l~~~~-l~~~~~~--~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~--~~  173 (242)
T d1xwdc1         101 NLPNLQYLLISNTG-IKHLPDV--HKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNK-NGIQEIHNC--AF  173 (242)
T ss_dssp             CCTTCCEEEEESCC-CCSCCCC--TTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT--TT
T ss_pred             ccccccccccchhh-hcccccc--cccccccccccccccc-cccccccccccccccccceeeeccc-ccccccccc--cc
Confidence            58999999999864 3333221  1122333444434333 34455543 23333 4788888875 456655432  34


Q ss_pred             CCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCcccccc
Q 022501          162 SLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFS  238 (296)
Q Consensus       162 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~  238 (296)
                      ..++++++...++..+++++...      +..+++|++|++++.. ++.++...    +.++..|..-++..++.+|
T Consensus       174 ~~~~l~~~~~l~~n~l~~l~~~~------f~~l~~L~~L~Ls~N~-l~~l~~~~----~~~l~~L~~l~~~~l~~lp  239 (242)
T d1xwdc1         174 NGTQLDELNLSDNNNLEELPNDV------FHGASGPVILDISRTR-IHSLPSYG----LENLKKLRARSTYNLKKLP  239 (242)
T ss_dssp             TTCCEEEEECTTCTTCCCCCTTT------TTTSCCCSEEECTTSC-CCCCCSSS----CTTCCEEESSSEESSSCSC
T ss_pred             cchhhhccccccccccccccHHH------hcCCCCCCEEECCCCc-CCccCHHH----HcCCcccccCcCCCCCcCC
Confidence            45677777766667777665432      3448999999999865 78776543    3444444444444455554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.40  E-value=2.4e-12  Score=101.11  Aligned_cols=162  Identities=18%  Similarity=0.189  Sum_probs=83.9

Q ss_pred             cCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCccccccccCc
Q 022501           55 RFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVPSS  134 (296)
Q Consensus        55 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  134 (296)
                      .++++++|++.++.+..+   .++    ..+++|++|+++++ .+..++.     +..+++|+.|+++++. ...++ .+
T Consensus        38 ~l~~l~~L~l~~~~i~~l---~~l----~~l~nL~~L~Ls~N-~l~~~~~-----l~~l~~L~~L~l~~n~-~~~~~-~l  102 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI---DGV----EYLNNLTQINFSNN-QLTDITP-----LKNLTKLVDILMNNNQ-IADIT-PL  102 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC---TTG----GGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCSSC-CCCCG-GG
T ss_pred             HhcCCCEEECCCCCCCCc---ccc----ccCCCcCcCccccc-cccCccc-----ccCCcccccccccccc-ccccc-cc
Confidence            456666666666655443   222    22666666666665 2333321     4456666666666543 22232 24


Q ss_pred             cccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecCC
Q 022501          135 ASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCSG  214 (296)
Q Consensus       135 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~  214 (296)
                      ..+++|+.|+++++.... ..   ....+++|+.|++++|. +..+..        +..+++|+.|++.++ ++++++. 
T Consensus       103 ~~l~~L~~L~l~~~~~~~-~~---~~~~l~~L~~L~l~~n~-l~~~~~--------l~~~~~L~~L~l~~n-~l~~l~~-  167 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITD-ID---PLKNLTNLNRLELSSNT-ISDISA--------LSGLTSLQQLNFSSN-QVTDLKP-  167 (199)
T ss_dssp             TTCTTCSEEECCSSCCCC-CG---GGTTCTTCSEEECCSSC-CCCCGG--------GTTCTTCSEEECCSS-CCCCCGG-
T ss_pred             cccccccccccccccccc-cc---ccchhhhhHHhhhhhhh-hccccc--------ccccccccccccccc-cccCCcc-
Confidence            455666666666544322 21   24556666666666653 222221        122566666666664 3444432 


Q ss_pred             CccccCCCccEEeeccCCccccccCCcccCCCcceE
Q 022501          215 NCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREV  250 (296)
Q Consensus       215 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l  250 (296)
                        +..+++|++|++++| +++.++. +..+++|++|
T Consensus       168 --l~~l~~L~~L~ls~N-~i~~i~~-l~~L~~L~~L  199 (199)
T d2omxa2         168 --LANLTTLERLDISSN-KVSDISV-LAKLTNLESL  199 (199)
T ss_dssp             --GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEE
T ss_pred             --ccCCCCCCEEECCCC-CCCCCcc-ccCCCCCCcC
Confidence              345666666666665 3555543 2355555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.35  E-value=3.9e-11  Score=101.66  Aligned_cols=56  Identities=14%  Similarity=0.063  Sum_probs=42.9

Q ss_pred             ccCCccceeeccCCcCcceecCCCccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCCc
Q 022501          192 IVFSRLKWLSLECLDSLTSFCSGNCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLD  257 (296)
Q Consensus       192 ~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~  257 (296)
                      ..+++|++|+++++. ++.++.     .+++|+.|++++| +++.+|.   .+++|++|+++++..
T Consensus       281 ~~~~~L~~L~Ls~N~-l~~lp~-----~~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~L  336 (353)
T d1jl5a_         281 DLPPSLEELNVSNNK-LIELPA-----LPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPL  336 (353)
T ss_dssp             CCCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC
T ss_pred             ccCCCCCEEECCCCc-cCcccc-----ccCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCcC
Confidence            346899999999874 777653     3588999999887 5888875   457899999976543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.29  E-value=1.2e-10  Score=98.53  Aligned_cols=245  Identities=16%  Similarity=0.115  Sum_probs=125.1

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      .++++|+|++++++.++ .     ..++|++|++++|.+..+|.    .+.+|++|++.++.+..+..         -.+
T Consensus        38 ~~l~~LdLs~~~L~~lp-~-----~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~l~~---------lp~   98 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLP-E-----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSD---------LPP   98 (353)
T ss_dssp             HTCSEEECTTSCCSCCC-S-----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCS---------CCT
T ss_pred             cCCCEEEeCCCCCCCCC-C-----CCCCCCEEECCCCCCccccc----chhhhhhhhhhhcccchhhh---------hcc
Confidence            36778888887777653 1     35678888888887777773    35678888888776554421         123


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-------------------CccccCCccEEEecc
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-------------------SSASFENLTTLEVSY  147 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-------------------~~~~l~~L~~L~l~~  147 (296)
                      .|++|.++++. +..++.     ...+++|+.+++.++.... .+.                   ....++.++.+.+.+
T Consensus        99 ~L~~L~L~~n~-l~~lp~-----~~~l~~L~~L~l~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~  171 (353)
T d1jl5a_          99 LLEYLGVSNNQ-LEKLPE-----LQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADN  171 (353)
T ss_dssp             TCCEEECCSSC-CSSCCC-----CTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCS
T ss_pred             ccccccccccc-cccccc-----hhhhccceeeccccccccc-cccccccccchhhccccccccccccccccceeccccc
Confidence            57777776543 444432     3445667777666543211 110                   122234455555443


Q ss_pred             CcCcccc----------------CCcccccCCCCccEEEEeCccccceeccccc----------ccccccccCCccceee
Q 022501          148 CQRLKNL----------------VSSSTAKSLVCLMKLRIDGCKLMTEIISSEG----------DVEEDEIVFSRLKWLS  201 (296)
Q Consensus       148 c~~l~~~----------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----------~~~~~~~~~~~L~~L~  201 (296)
                      +......                ........++.|+.+.++++.... ++....          .........+.+....
T Consensus       172 n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~  250 (353)
T d1jl5a_         172 NSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLD  250 (353)
T ss_dssp             SCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            2211000                000122445667777776653221 111000          0000011122333333


Q ss_pred             ccCC--cCcceecCC------------CccccCCCccEEeeccCCccccccCCcccCCCcceEEcccCCcccccCCCchH
Q 022501          202 LECL--DSLTSFCSG------------NCTFKFPSLEDLFVIDCPKMMIFSFGVLSTPRLREVRKNWGLDKGCWEGNLNT  267 (296)
Q Consensus       202 l~~~--~~L~~l~~~------------~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  267 (296)
                      +...  ..+..++..            .....+++|++|++++| +++.+|.   .+++|+.|+++++...--.  ...+
T Consensus       251 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N~L~~l~--~~~~  324 (353)
T d1jl5a_         251 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA---LPPRLERLIASFNHLAEVP--ELPQ  324 (353)
T ss_dssp             CCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCCSCCC--CCCT
T ss_pred             cccccccccccccchhcccccccCccccccccCCCCCEEECCCC-ccCcccc---ccCCCCEEECCCCcCCccc--cccC
Confidence            2211  111111110            11124688999999998 5778886   4689999999876544211  2234


Q ss_pred             HHHHHHhccCCCCCccch
Q 022501          268 TIQKLCNNKLPPMVPFSS  285 (296)
Q Consensus       268 ~l~~l~~~~~~~l~~~~~  285 (296)
                      .++++++.+++ +..+|.
T Consensus       325 ~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         325 NLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             TCCEEECCSSC-CSSCCC
T ss_pred             CCCEEECcCCc-CCCCCc
Confidence            67777766654 555553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.2e-10  Score=87.92  Aligned_cols=128  Identities=15%  Similarity=0.120  Sum_probs=75.4

Q ss_pred             cCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCccc
Q 022501           31 LFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLD  110 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  110 (296)
                      ...+++.|++++|.+..++ ..+..+++|+.|++++|.++.+..+       ..+++|+.|.++++. +..++...   .
T Consensus        16 n~~~lr~L~L~~n~I~~i~-~~~~~l~~L~~L~Ls~N~i~~l~~~-------~~l~~L~~L~ls~N~-i~~l~~~~---~   83 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDGF-------PLLRRLKTLLVNNNR-ICRIGEGL---D   83 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEECCC-------CCCSSCCEEECCSSC-CCEECSCH---H
T ss_pred             CcCcCcEEECCCCCCCccC-ccccccccCCEEECCCCCCCccCCc-------ccCcchhhhhccccc-ccCCCccc---c
Confidence            4456777777777776665 3445667777777777766655221       236677777777654 34443221   3


Q ss_pred             ccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCC--cccccCCCCccEEEEe
Q 022501          111 SVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVS--SSTAKSLVCLMKLRID  172 (296)
Q Consensus       111 ~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L~~L~l~  172 (296)
                      ..+++|+.|++.++ .+.+++.  .+..+++|++|++++|+ ++..+.  ...+..+|+|+.|+..
T Consensus        84 ~~l~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          84 QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccccceeccc-cccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCCC
Confidence            45677777777775 3443332  34567788888888764 333321  1134567788877633

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.9e-10  Score=85.88  Aligned_cols=124  Identities=15%  Similarity=0.145  Sum_probs=72.1

Q ss_pred             ccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            7 ANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      .++++|+|++|+++.++ ..+.  .+++|+.|++++|.+..++  .+..+++|++|++++|.+..+.+.     ....++
T Consensus        18 ~~lr~L~L~~n~I~~i~-~~~~--~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~-----~~~~l~   87 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIE-NLGA--TLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEG-----LDQALP   87 (162)
T ss_dssp             TSCEEEECTTSCCCSCC-CGGG--GTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSC-----HHHHCT
T ss_pred             CcCcEEECCCCCCCccC-cccc--ccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCcc-----cccccc
Confidence            45677777777777663 3333  5677777777777776664  255677777777777766665321     012367


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc----CccccCCccEEE
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP----SSASFENLTTLE  144 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~  144 (296)
                      +|+.|.++++. +.+++.  ...+..+++|+.+++.+|+. ...+.    .+..+|+|+.|+
T Consensus        88 ~L~~L~L~~N~-i~~~~~--l~~l~~l~~L~~L~l~~N~i-~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          88 DLTELILTNNS-LVELGD--LDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TCCEEECCSCC-CCCGGG--GGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccceecccc-cccccc--ccccccccccchhhcCCCcc-ccccchHHHHHHHCCCcCeeC
Confidence            77777777653 222221  11145567777777777642 32321    234466676664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=1.4e-09  Score=78.20  Aligned_cols=100  Identities=18%  Similarity=0.231  Sum_probs=68.7

Q ss_pred             eEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccc
Q 022501           10 EELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIK   89 (296)
Q Consensus        10 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~   89 (296)
                      +.|++++|+++.+.  .++  .+++|++|++++|.+..+|. .+..+++|++|++++|.++.+..       ...+++|+
T Consensus         1 R~L~Ls~n~l~~l~--~l~--~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~~-------~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLE--QLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG-------VANLPRLQ   68 (124)
T ss_dssp             SEEECTTSCCSSCC--CGG--GGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCGG-------GTTCSSCC
T ss_pred             CEEEcCCCCCCCCc--ccc--cCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccCc-------cccccccC
Confidence            47899999998874  255  88999999999999988886 46789999999999997765522       23477777


Q ss_pred             eeEecccccccccccccCcccccCCCccEEEeccC
Q 022501           90 SLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWC  124 (296)
Q Consensus        90 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~  124 (296)
                      +|.+++.. +..++.  ...+..+++|+.++++++
T Consensus        69 ~L~l~~N~-i~~~~~--~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          69 ELLLCNNR-LQQSAA--IQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             EEECCSSC-CCSSST--TGGGGGCTTCCEEECTTS
T ss_pred             eEECCCCc-cCCCCC--chhhcCCCCCCEEECCCC
Confidence            77776643 222221  011344566666666554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=1.4e-09  Score=84.39  Aligned_cols=127  Identities=17%  Similarity=0.200  Sum_probs=92.4

Q ss_pred             ceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCC-ccChHHHhcCCcccEEEEeccccceEeecCccccccCCccc
Q 022501            9 LEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSD-NFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQ   87 (296)
Q Consensus         9 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~   87 (296)
                      ..+++.+++++..++ ..    -.+++++|++++|.+. .++...|.++++|++|++.++.+..+.+     .....+++
T Consensus        10 ~~~v~Cs~~~L~~iP-~~----lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~-----~~~~~~~~   79 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIP-RD----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-----NAFEGASH   79 (192)
T ss_dssp             TTEEECTTSCCSSCC-SC----CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-----TTTTTCTT
T ss_pred             CCEEEEeCCCcCccC-CC----CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccc-----cccccccc
Confidence            356777777777764 22    2368999999999886 4666678889999999999887765533     12245888


Q ss_pred             cceeEecccccccccccccCcccccCCCccEEEeccCcccccccc-CccccCCccEEEeccCcC
Q 022501           88 IKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQR  150 (296)
Q Consensus        88 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~  150 (296)
                      |++|.+++. .+..++...   +.++++|++|+++++ .+..+++ .+..+++|++|++++.+-
T Consensus        80 L~~L~Ls~N-~l~~l~~~~---F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          80 IQELQLGEN-KIKEISNKM---FLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCEEECCSC-CCCEECSSS---STTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cceeeeccc-cccccCHHH---HhCCCcccccccCCc-cccccCHHHhcCCccccccccccccc
Confidence            999999876 455554432   567899999999986 5666655 456788999999987653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=1.6e-09  Score=77.77  Aligned_cols=84  Identities=15%  Similarity=0.133  Sum_probs=69.7

Q ss_pred             ccccceEEEeeccCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCC
Q 022501            5 VIANLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGM   84 (296)
Q Consensus         5 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   84 (296)
                      .+++|++|++++|+++.++ ..+.  .+++|+.|++++|.+..++  .++.+++|++|++.+|.+..+.....    ...
T Consensus        18 ~l~~L~~L~ls~N~l~~lp-~~~~--~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~----l~~   88 (124)
T d1dcea3          18 QLLLVTHLDLSHNRLRALP-PALA--ALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQP----LVS   88 (124)
T ss_dssp             GGTTCCEEECCSSCCCCCC-GGGG--GCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGG----GGG
T ss_pred             cCCCCCEEECCCCccCcch-hhhh--hhhcccccccccccccccC--ccccccccCeEECCCCccCCCCCchh----hcC
Confidence            4789999999999999884 4466  8999999999999999887  37899999999999998776644333    244


Q ss_pred             ccccceeEecccc
Q 022501           85 LTQIKSLKLWELS   97 (296)
Q Consensus        85 ~~~L~~L~l~~~~   97 (296)
                      +++|+.|++++.+
T Consensus        89 ~~~L~~L~l~~N~  101 (124)
T d1dcea3          89 CPRLVLLNLQGNS  101 (124)
T ss_dssp             CTTCCEEECTTSG
T ss_pred             CCCCCEEECCCCc
Confidence            8999999998754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.85  E-value=5.7e-09  Score=80.80  Aligned_cols=128  Identities=13%  Similarity=0.078  Sum_probs=81.9

Q ss_pred             ccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCC
Q 022501           35 LKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQ  114 (296)
Q Consensus        35 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~  114 (296)
                      .+.++.+++....+|.++   .+++++|++++|.+....+...    ...+++|+.|.+++.......+..    +..++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~----f~~l~~L~~L~L~~N~i~~~~~~~----~~~~~   78 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGL----FGRLPHLVKLELKRNQLTGIEPNA----FEGAS   78 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCS----GGGCTTCCEEECCSSCCCCBCTTT----TTTCT
T ss_pred             CCEEEEeCCCcCccCCCC---CCCCCEEEeCCCCCcccccccc----cCCCceEeeeeccccccccccccc----ccccc
Confidence            456666676666777432   2578888888887765433222    234778888888765543322222    55677


Q ss_pred             CccEEEeccCcccccccc-CccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccc
Q 022501          115 NLETLEIWWCNNLINLVP-SSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKL  176 (296)
Q Consensus       115 ~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~  176 (296)
                      +|++|+++++ .+..+++ .+.++++|++|+++++ .+..+++. .+..+++|+++++++++.
T Consensus        79 ~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~~~-~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          79 HIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCCB
T ss_pred             ccceeeeccc-cccccCHHHHhCCCcccccccCCc-cccccCHH-HhcCCccccccccccccc
Confidence            7888888775 5555554 3566788888888764 46665543 456778888888877654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.77  E-value=9.2e-11  Score=91.72  Aligned_cols=145  Identities=19%  Similarity=0.184  Sum_probs=96.4

Q ss_pred             cceEEEeec--cCccccccCCCCCCcCCCccEEEeccCCCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCc
Q 022501            8 NLEELKLSG--KDITMICHDHLPKHLFQNLKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGML   85 (296)
Q Consensus         8 ~L~~L~L~~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   85 (296)
                      .++.+.+.+  +.++.++ ..+.  .+++|++|++++|.+..++  .+..+++|++|++++|.++.+..      ....+
T Consensus        24 ~~~~~~l~~~~~~i~~l~-~sl~--~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~------~~~~~   92 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMD-ATLS--TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN------LDAVA   92 (198)
T ss_dssp             TCSCEECCBCCTTCCCCH-HHHH--HTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSS------HHHHH
T ss_pred             ccceeeeecccCchhhhh-hHHh--cccccceeECcccCCCCcc--cccCCccccChhhcccccccccc------ccccc
Confidence            455666665  3455542 2344  7899999999988888776  36789999999999987665422      11236


Q ss_pred             cccceeEecccccccccccccCcccccCCCccEEEeccCcccccccc--CccccCCccEEEeccCcCccccCCc------
Q 022501           86 TQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINLVP--SSASFENLTTLEVSYCQRLKNLVSS------  157 (296)
Q Consensus        86 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~------  157 (296)
                      ++|+.|.++++ .+..++.     +..+++|+.|+++++ .+.+++.  .+..+++|++|++++++-.......      
T Consensus        93 ~~L~~L~l~~N-~i~~l~~-----~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  165 (198)
T d1m9la_          93 DTLEELWISYN-QIASLSG-----IEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY  165 (198)
T ss_dssp             HHCCEEECSEE-ECCCHHH-----HHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHH
T ss_pred             ccccccccccc-ccccccc-----ccccccccccccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhH
Confidence            68999999876 4555432     566788999999885 4444442  4567899999999886522211110      


Q ss_pred             --ccccCCCCccEEE
Q 022501          158 --STAKSLVCLMKLR  170 (296)
Q Consensus       158 --~~~~~l~~L~~L~  170 (296)
                        ..+..+|+|+.|+
T Consensus       166 r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         166 RIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHCSSCCEES
T ss_pred             HHHHHHHCCCcCEeC
Confidence              0145678888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.67  E-value=3.2e-10  Score=88.55  Aligned_cols=130  Identities=20%  Similarity=0.215  Sum_probs=86.5

Q ss_pred             cCCCccEEEeccCC--CCccChHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCc
Q 022501           31 LFQNLKSLEIVSDK--SDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYK  108 (296)
Q Consensus        31 ~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  108 (296)
                      ....++.+++++..  +..++ ..+..+++|++|++++|.++.+..   +    ..+++|+.|+++++. +..++..   
T Consensus        21 ~~~~~~~~~l~~~~~~i~~l~-~sl~~L~~L~~L~Ls~n~I~~i~~---l----~~l~~L~~L~Ls~N~-i~~i~~~---   88 (198)
T d1m9la_          21 VATEAEKVELHGMIPPIEKMD-ATLSTLKACKHLALSTNNIEKISS---L----SGMENLRILSLGRNL-IKKIENL---   88 (198)
T ss_dssp             CCTTCSCEECCBCCTTCCCCH-HHHHHTTTCCEEECSEEEESCCCC---H----HHHTTCCEEECCEEE-ECSCSSH---
T ss_pred             cccccceeeeecccCchhhhh-hHHhcccccceeECcccCCCCccc---c----cCCccccChhhcccc-ccccccc---
Confidence            34556677775542  23443 467889999999999997766532   2    338899999998764 4454322   


Q ss_pred             ccccCCCccEEEeccCccccccccCccccCCccEEEeccCcCccccCCcccccCCCCccEEEEeCccc
Q 022501          109 LDSVFQNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQRLKNLVSSSTAKSLVCLMKLRIDGCKL  176 (296)
Q Consensus       109 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~  176 (296)
                       ...+++|+.|+++++ .++.++ .+..+++|+.|+++++ .++++.....+..+++|+.|++++|+.
T Consensus        89 -~~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_          89 -DAVADTLEELWISYN-QIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             -HHHHHHCCEEECSEE-ECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             -ccccccccccccccc-cccccc-cccccccccccccccc-hhccccccccccCCCccceeecCCCcc
Confidence             334567899999875 455553 3556788999999875 354443222457788888888888764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.8e-08  Score=72.82  Aligned_cols=105  Identities=15%  Similarity=0.099  Sum_probs=73.2

Q ss_pred             cceEEEeeccCccccccCCCCCCcCCCccEEEeccC-CCCccChHHHhcCCcccEEEEeccccceEeecCccccccCCcc
Q 022501            8 NLEELKLSGKDITMICHDHLPKHLFQNLKSLEIVSD-KSDNFSIGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLT   86 (296)
Q Consensus         8 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~   86 (296)
                      ..++++..++++.++ +..+.  .+++|++|++.++ .+..++...|.++++|++|++++|.++.+.+. .    ...++
T Consensus         9 ~~~~l~c~~~~~~~~-p~~l~--~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~-~----f~~l~   80 (156)
T d2ifga3           9 GSSGLRCTRDGALDS-LHHLP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD-A----FHFTP   80 (156)
T ss_dssp             SSSCEECCSSCCCTT-TTTSC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT-G----GGSCS
T ss_pred             CCCeEEecCCCCccC-ccccc--CccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc-c----ccccc
Confidence            456677777666555 34455  7888999999665 46778877888899999999998888776431 1    23488


Q ss_pred             ccceeEecccccccccccccCcccccCCCccEEEeccCc
Q 022501           87 QIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCN  125 (296)
Q Consensus        87 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~  125 (296)
                      +|++|.+++.. +..++...    .....|+.|++++++
T Consensus        81 ~L~~L~Ls~N~-l~~l~~~~----~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          81 RLSRLNLSFNA-LESLSWKT----VQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCCEEECCSSC-CSCCCSTT----TCSCCCCEEECCSSC
T ss_pred             cccceeccCCC-CcccChhh----hccccccccccCCCc
Confidence            88999998653 55665542    223468899998753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.7e-07  Score=67.23  Aligned_cols=104  Identities=15%  Similarity=0.082  Sum_probs=54.5

Q ss_pred             ccEEEeccCCCCccChHHHhcCCcccEEEEecc-ccceEeecCccccccCCccccceeEecccccccccccccCcccccC
Q 022501           35 LKSLEIVSDKSDNFSIGFLQRFHNVERLKLRNS-SYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVF  113 (296)
Q Consensus        35 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~  113 (296)
                      ...++..++.....|. .+..+++|++|++.++ .++.+.+ .    ....+++|+.|.+++. .++.++...   +..+
T Consensus        10 ~~~l~c~~~~~~~~p~-~l~~l~~l~~L~l~~n~~l~~i~~-~----~f~~l~~L~~L~Ls~N-~l~~i~~~~---f~~l   79 (156)
T d2ifga3          10 SSGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLEL-R----DLRGLGELRNLTIVKS-GLRFVAPDA---FHFT   79 (156)
T ss_dssp             SSCEECCSSCCCTTTT-TSCSCSCCSEEECCSCSSCCEECG-G----GSCSCCCCSEEECCSS-CCCEECTTG---GGSC
T ss_pred             CCeEEecCCCCccCcc-cccCccccCeeecCCCccccccCc-h----hhccccccCcceeecc-ccCCccccc---cccc
Confidence            3445555555444443 2345566677766544 2444422 1    1133666777776654 344443322   4456


Q ss_pred             CCccEEEeccCccccccccCccccCCccEEEeccCc
Q 022501          114 QNLETLEIWWCNNLINLVPSSASFENLTTLEVSYCQ  149 (296)
Q Consensus       114 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~c~  149 (296)
                      ++|++|+++++ .++.++.......+|++|++++.+
T Consensus        80 ~~L~~L~Ls~N-~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          80 PRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             SCCCEEECCSS-CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ccccceeccCC-CCcccChhhhccccccccccCCCc
Confidence            66777777664 455555544334456667666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.32  E-value=1.9e-08  Score=84.99  Aligned_cols=241  Identities=12%  Similarity=0.012  Sum_probs=140.0

Q ss_pred             cccceEEEeeccCcccccc----CCCCCCcCCCccEEEeccCCCCcc----C------hHHHhcCCcccEEEEeccccce
Q 022501            6 IANLEELKLSGKDITMICH----DHLPKHLFQNLKSLEIVSDKSDNF----S------IGFLQRFHNVERLKLRNSSYKE   71 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~------~~~~~~l~~L~~L~l~~~~~~~   71 (296)
                      ..+|++|+|++|.+.....    ..+.  ..++|+.|++.++.....    +      ...+..+++|++|++++|.+..
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIA--SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTT--TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHH--hCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            5789999999987654321    1233  679999999987654422    1      1234567899999999885432


Q ss_pred             EeecCccccccCCccccceeEecccccccccccc----c------CcccccCCCccEEEeccCccc----cccccCcccc
Q 022501           72 IFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQ----C------YKLDSVFQNLETLEIWWCNNL----INLVPSSASF  137 (296)
Q Consensus        72 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~------~~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~l  137 (296)
                      . ....+.......++|++|.++++.- ......    .      .......+.|+.+.+.++..-    ..+...+...
T Consensus       108 ~-~~~~l~~~l~~~~~L~~L~l~~n~l-~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         108 T-AQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  185 (344)
T ss_dssp             T-THHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             c-cccchhhhhcccccchheecccccc-cccccccccccccccccccccccCcccceeecccccccccccccccchhhhh
Confidence            1 1111222233478999999987742 110000    0      000234567899998875321    1122234456


Q ss_pred             CCccEEEeccCcCccccC----CcccccCCCCccEEEEeCccccceecccccccccccccCCccceeeccCCcCcceecC
Q 022501          138 ENLTTLEVSYCQRLKNLV----SSSTAKSLVCLMKLRIDGCKLMTEIISSEGDVEEDEIVFSRLKWLSLECLDSLTSFCS  213 (296)
Q Consensus       138 ~~L~~L~l~~c~~l~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~  213 (296)
                      +.|+.|++++|. +.+..    ....+...++|+.|++++|..-..-..   .....+..+++|++|++++|. +.+...
T Consensus       186 ~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~---~L~~~l~~~~~L~~L~Ls~n~-i~~~g~  260 (344)
T d2ca6a1         186 RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS---ALAIALKSWPNLRELGLNDCL-LSARGA  260 (344)
T ss_dssp             TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH---HHHHHGGGCTTCCEEECTTCC-CCHHHH
T ss_pred             hhhccccccccc-ccccccccchhhhhcchhhhcccccccccccccccc---cccccccccccchhhhhhcCc-cCchhh
Confidence            789999998874 33210    112345678999999998753111000   001123458899999999985 433211


Q ss_pred             CC---cc--ccCCCccEEeeccCCcccc-----ccCCcc-cCCCcceEEcccCC
Q 022501          214 GN---CT--FKFPSLEDLFVIDCPKMMI-----FSFGVL-STPRLREVRKNWGL  256 (296)
Q Consensus       214 ~~---~~--~~~~~L~~L~l~~c~~l~~-----~~~~~~-~~~~L~~l~l~~~~  256 (296)
                      ..   ..  ...++|++|++++|. ++.     +...+. ..++|+.|+++++.
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            00   01  134779999999875 543     222222 46789999997554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=7.8e-07  Score=66.43  Aligned_cols=63  Identities=17%  Similarity=0.086  Sum_probs=37.4

Q ss_pred             cCCCccEEEeccCCCCccC--hHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEeccccc
Q 022501           31 LFQNLKSLEIVSDKSDNFS--IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSN   98 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~   98 (296)
                      .+++|+.|++++|.+..++  ...++.+++|+.|++++|.++.+.++..     ....+|+.|.+.+.+-
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-----l~~~~L~~L~L~~Npl  127 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-----IKGLKLEELWLDGNSL  127 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-----HTTCCCSSCCCTTSTT
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-----hhccccceeecCCCCc
Confidence            5677777777777766543  2345667777777777776655433221     1133566677766543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.52  E-value=4.2e-06  Score=70.10  Aligned_cols=193  Identities=13%  Similarity=0.041  Sum_probs=113.7

Q ss_pred             cccceEEEeeccCccccc----cCCCCCCcCCCccEEEeccCCCCccChH-------------HHhcCCcccEEEEeccc
Q 022501            6 IANLEELKLSGKDITMIC----HDHLPKHLFQNLKSLEIVSDKSDNFSIG-------------FLQRFHNVERLKLRNSS   68 (296)
Q Consensus         6 l~~L~~L~L~~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------------~~~~l~~L~~L~l~~~~   68 (296)
                      +++|++|+|+++.+....    ...+.  ..++|+.|++++|........             .....+.|+.+.+.++.
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             CCCcccccccccccccccccchhhhhc--ccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            688999999987765431    12234  678999999998876421111             12356789999998875


Q ss_pred             cceEeecCccccccCCccccceeEecccccccccc--cccCcccccCCCccEEEeccCccc----cccccCccccCCccE
Q 022501           69 YKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIW--EQCYKLDSVFQNLETLEIWWCNNL----INLVPSSASFENLTT  142 (296)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~l~~L~~  142 (296)
                      +..-. ...+......++.|+.|.++++.. ..-.  ......+...++|+.|+++++..-    ..+...+..+++|++
T Consensus       170 i~~~~-~~~l~~~l~~~~~L~~L~L~~n~i-~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         170 LENGS-MKEWAKTFQSHRLLHTVKMVQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             CTGGG-HHHHHHHHHHCTTCCEEECCSSCC-CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             ccccc-cccccchhhhhhhhcccccccccc-cccccccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence            43210 111222233478899999988753 2110  000111566789999999986421    123334566789999


Q ss_pred             EEeccCcCccccCCccc---c--cCCCCccEEEEeCccccceeccccccccccc-ccCCccceeeccCCc
Q 022501          143 LEVSYCQRLKNLVSSST---A--KSLVCLMKLRIDGCKLMTEIISSEGDVEEDE-IVFSRLKWLSLECLD  206 (296)
Q Consensus       143 L~l~~c~~l~~~~~~~~---~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~  206 (296)
                      |++++|. +++......   +  ...+.|++|++++|..-.+-.....   ... ...++|+.|++++..
T Consensus       248 L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~---~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         248 LGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK---TVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             EECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH---HHHHHHCTTCCEEECTTSB
T ss_pred             hhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHH---HHHHccCCCCCEEECCCCc
Confidence            9999885 443211111   1  2347899999999852111100000   001 137899999998754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=8.4e-06  Score=70.25  Aligned_cols=115  Identities=14%  Similarity=0.096  Sum_probs=73.9

Q ss_pred             ccceEEEeeccCccccc-cCCCCCCcCCCccEEEeccCCCCccC----hHHHhcCCcccEEEEeccccceEeecCccccc
Q 022501            7 ANLEELKLSGKDITMIC-HDHLPKHLFQNLKSLEIVSDKSDNFS----IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQ   81 (296)
Q Consensus         7 ~~L~~L~L~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   81 (296)
                      ++|++|+++.+++++.. ...++  .++++++|++.+|.+....    ...+..+++|++|++++|.+... ....+...
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~--~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~-~~~~l~~~   78 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLP--LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV-GVHCVLQG   78 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHH--HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH-HHHHHHHT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHH--hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH-HHHHHHHH
Confidence            47899999999987753 12244  7899999999999766322    23457889999999998865321 01111111


Q ss_pred             c-CCccccceeEeccccccccccccc-CcccccCCCccEEEeccCc
Q 022501           82 A-GMLTQIKSLKLWELSNLLHIWEQC-YKLDSVFQNLETLEIWWCN  125 (296)
Q Consensus        82 ~-~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~~L~~L~l~~~~  125 (296)
                      . ....+|++|++++|. +....... ...+..+++|++|+++++.
T Consensus        79 l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence            1 124589999999885 43321110 0114567889999998764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00015  Score=61.98  Aligned_cols=114  Identities=15%  Similarity=0.212  Sum_probs=73.8

Q ss_pred             CCccEEEeccCCCCccC-hHHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccC-ccc
Q 022501           33 QNLKSLEIVSDKSDNFS-IGFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCY-KLD  110 (296)
Q Consensus        33 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~  110 (296)
                      ++|+.||++++.+.... ...+..++++++|++.+|.+... ..+.+......+++|+.|+++++. +.+...... ..+
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~-~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l   79 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA-RCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH-HHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHH-HHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHH
Confidence            47999999988887532 34667899999999999965421 112223333568999999999864 322110000 001


Q ss_pred             -ccCCCccEEEeccCccccc-----cccCccccCCccEEEeccCc
Q 022501          111 -SVFQNLETLEIWWCNNLIN-----LVPSSASFENLTTLEVSYCQ  149 (296)
Q Consensus       111 -~~~~~L~~L~l~~~~~l~~-----~~~~~~~l~~L~~L~l~~c~  149 (296)
                       ....+|++|++++|. +++     ++..+..+++|++|+++++.
T Consensus        80 ~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             CSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             hcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc
Confidence             123579999999985 433     23345567899999998753

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=4.8e-05  Score=56.32  Aligned_cols=87  Identities=16%  Similarity=-0.007  Sum_probs=55.7

Q ss_pred             HHHhcCCcccEEEEeccccceEeecCccccccCCccccceeEecccccccccccccCcccccCCCccEEEeccCcccccc
Q 022501           51 GFLQRFHNVERLKLRNSSYKEIFSNGEVEKQAGMLTQIKSLKLWELSNLLHIWEQCYKLDSVFQNLETLEIWWCNNLINL  130 (296)
Q Consensus        51 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~  130 (296)
                      ..+..+++|++|++++|.++.+.++   ......+++|+.|++++.. +.++....   .-....|+.+++.+++.....
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~---~~~~~~l~~L~~L~Ls~N~-i~~l~~l~---~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDM---SSIVQKAPNLKILNLSGNE-LKSERELD---KIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGG---GTHHHHSTTCCCCCCTTSC-CCCGGGHH---HHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchh---HHHHhhCCcccccccccCc-cccchhhh---hhhccccceeecCCCCcCcCc
Confidence            3456799999999999987765332   2223458999999999754 44443211   122346899999887654322


Q ss_pred             cc-------CccccCCccEEE
Q 022501          131 VP-------SSASFENLTTLE  144 (296)
Q Consensus       131 ~~-------~~~~l~~L~~L~  144 (296)
                      ..       ....+|+|+.|+
T Consensus       132 ~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         132 RDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSHHHHHHHHHTTSTTCCEET
T ss_pred             ccchhHHHHHHHHCCCCCEEC
Confidence            21       134588898774

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.43  E-value=0.0045  Score=45.28  Aligned_cols=13  Identities=8%  Similarity=0.184  Sum_probs=6.8

Q ss_pred             cCCcccEEEEecc
Q 022501           55 RFHNVERLKLRNS   67 (296)
Q Consensus        55 ~l~~L~~L~l~~~   67 (296)
                      ..++|++|++++|
T Consensus        44 ~n~~L~~L~Ls~n   56 (166)
T d1io0a_          44 TNTYVKKFSIVGT   56 (166)
T ss_dssp             TCCSCCEEECTTS
T ss_pred             cCCccCeeeccCC
Confidence            4455555555555

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.42  E-value=0.0045  Score=45.39  Aligned_cols=38  Identities=5%  Similarity=0.136  Sum_probs=18.2

Q ss_pred             cCCCccEEEeccCCCCcc----ChHHHhcCCcccEEEEeccc
Q 022501           31 LFQNLKSLEIVSDKSDNF----SIGFLQRFHNVERLKLRNSS   68 (296)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~   68 (296)
                      ..++|++|++++|.+..-    -...+...+.|++|++++|.
T Consensus        42 ~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          42 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             hCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            345566666655554411    11233344555666555553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.39  E-value=0.0035  Score=45.90  Aligned_cols=89  Identities=15%  Similarity=0.130  Sum_probs=53.3

Q ss_pred             cccceEEEeec-cCccccccCCCC--CCcCCCccEEEeccCCCCccC----hHHHhcCCcccEEEEeccccceEeecCcc
Q 022501            6 IANLEELKLSG-KDITMICHDHLP--KHLFQNLKSLEIVSDKSDNFS----IGFLQRFHNVERLKLRNSSYKEIFSNGEV   78 (296)
Q Consensus         6 l~~L~~L~L~~-~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   78 (296)
                      .|+|++|.+++ +.++.-.-..+.  ....++|++|++++|.+..-.    ...+...++++.+++.+|.+..- ....+
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~-g~~~l   94 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS-GILAL   94 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH-HHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch-hHHHH
Confidence            58999999998 556543211111  126799999999999776321    23456678999999888743211 01111


Q ss_pred             ccccCCccccceeEecc
Q 022501           79 EKQAGMLTQIKSLKLWE   95 (296)
Q Consensus        79 ~~~~~~~~~L~~L~l~~   95 (296)
                      .......++|+.+.++.
T Consensus        95 ~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          95 VEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHGGGGCSSCCEEECCC
T ss_pred             HHHHHhCccccEEeecc
Confidence            22233356666666543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.23  E-value=0.021  Score=41.62  Aligned_cols=11  Identities=27%  Similarity=0.320  Sum_probs=5.4

Q ss_pred             CCCccEEEecc
Q 022501           32 FQNLKSLEIVS   42 (296)
Q Consensus        32 l~~L~~L~l~~   42 (296)
                      .++|+.|+|++
T Consensus        14 ~~~L~~L~L~~   24 (167)
T d1pgva_          14 DTDLKEVNINN   24 (167)
T ss_dssp             CSSCCEEECTT
T ss_pred             CCCCcEEEeCC
Confidence            34455555543