Citrus Sinensis ID: 022504

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSPWPLSSLLSWMSSL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEccccccEEccccHHHHHHHHHHHHHHHHHHHHHHEEEccccEEEEccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgvdmgsmraalpSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFlfhrserpqltfSILCSFFLLsvfgcssqIFSFVgiqyssptlSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFvvtfykgppligelshsgsprrlllspqlswilGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVvsepsdwklglDIGLVAVLYSLLALGFELACAHGACRELDLFmyqcsspwplsslLSWMSSL
Flexible Loop (DISEMBL)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSPwplssllswmssl
Low Complexity Region (SEG)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAlsslfflfcsflfHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGElshsgsprrlllspqlsWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCsspwplssllswmssl
Disordered region (IsUnstruct)
***********LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSPWPLSSLLSW****
Disordered Region (DISOPRED)
************PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG*****************SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSPWPLSSLLSWMSSL
Disordered Region (DISEMBL)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSPWPLSSLLSWMSSL
Disordered Region (DISPRO)
*****GSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS*************LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSPWPLSSLLSWMSSL
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSPWPLSSLLSWMSSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q94JU2	367	WAT1-related protein At3g	yes	no	0.814	0.656	0.424	8e-39
Q9FL08	368	WAT1-related protein At5g	no	no	0.834	0.671	0.383	4e-38
Q945L4	339	WAT1-related protein At5g	no	no	0.871	0.761	0.349	1e-33
F4KHA8	370	WAT1-related protein At5g	no	no	0.834	0.667	0.347	3e-33
Q9FL41	402	WAT1-related protein At5g	no	no	0.763	0.562	0.324	9e-30
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.824	0.642	0.338	1e-29
F4JK59	347	WAT1-related protein At4g	no	no	0.807	0.688	0.354	3e-28
Q9M130	365	WAT1-related protein At4g	no	no	0.817	0.663	0.327	4e-28
Q56X95	355	WAT1-related protein At3g	no	no	0.800	0.667	0.355	4e-28
Q8GXB4	374	WAT1-related protein At1g	no	no	0.807	0.639	0.328	1e-27

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  160 bits (406), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/257 (42%), Positives = 154/257 (59%), Gaps = 16/257 (6%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFF---LFCSFLFHR 65
           R  LP   +VI+  A V    + KAA  KG++ +V IVYS  L++L     LFCSF   R
Sbjct: 8   REVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSF---R 64

Query: 66  SER-PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFR 124
           S   P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR
Sbjct: 65  SRTLPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFR 124

Query: 125 LEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILG 184
           +E ++++  SS AK LGT  SIGGAF+VT Y GP +I +   S S R    +P   WILG
Sbjct: 125 MESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILG 182

Query: 185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSD--- 240
             FLA E F    W+I+Q  I+R++ A   +   + F++  +S   AL+ + +E +D   
Sbjct: 183 AGFLAVEYFCVPLWYIVQTQIMREYPAEFTV---VCFYSIGVSFWTALVTLFTEGNDLGA 239

Query: 241 WKLGLDIGLVAVLYSLL 257
           WK+  +I LV+++ S L
Sbjct: 240 WKIKPNIALVSIVCSGL 256

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  158 bits (400), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/253 (38%), Positives = 141/253 (55%), Gaps = 6/253 (2%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   M  V  A V +  + KAA  +G++ YV + YS  +S+L  L  S +F RS R
Sbjct: 16  RDVVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRR 75

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P     +    FLL + G  SQI    GI YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct: 76  LPAAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQ 135

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-----SWI 182
           +   + ++QAK +G   SI GA VV  YKGP ++   S +     + L  QL     SWI
Sbjct: 136 VRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLTSIESSWI 195

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           +GG  LA++ F+ S W+ILQ  ++  +   + ++F+   F T++S    L   S  + W 
Sbjct: 196 IGGLLLASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSWV 255

Query: 243 LGLDIGLVAVLYS 255
           L  DI L A++YS
Sbjct: 256 LKPDISLAAIIYS 268

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 155/286 (54%), Gaps = 28/286 (9%)

Query: 17  MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER-PQLTFSI 75
           MV+   + V    ++KAA SKG++ +V++VYS    SL  L  +F   RS   P LTFSI
Sbjct: 17  MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query: 76  LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSS 135
           LC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF+LA++FR+E ++   KSS
Sbjct: 77  LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query: 136 QAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMN 195
            AK LGT  SI GA VVT Y GP              +L+S    WI+GG  LA +  + 
Sbjct: 137 VAKVLGTILSIIGALVVTLYHGP--------------MLMSSHSDWIIGGGLLALQYILV 182

Query: 196 SAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLY 254
           S  +++ A  + ++ +AV++ + +      + +    L     P  W +  DI L+ V+ 
Sbjct: 183 SVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITVVA 242

Query: 255 S-LLALGFEL----ACAHGACRELDLFMYQCSSPWPLSSLLSWMSS 295
           + +L  G+ +    A +H     L +F        PLS L++ +S+
Sbjct: 243 TGILNSGYYVIHTWAVSHKGPVYLSMFK-------PLSILIAAVST 281

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/253 (34%), Positives = 140/253 (55%), Gaps = 6/253 (2%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   MV V    V +  + KAA  +G++ YV + Y+  +++L  L  S +F RS+R
Sbjct: 17  RDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKR 76

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct: 77  LPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQ 136

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-----SWI 182
           +   + ++QAK +GT  SI GA VV  YKGP ++ + S +     + L   L     SWI
Sbjct: 137 IVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWI 196

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           +GG  LA +  + S W+ILQ  ++  +   + ++F      T++S    L    + + + 
Sbjct: 197 IGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFI 256

Query: 243 LGLDIGLVAVLYS 255
           L   + L +V+YS
Sbjct: 257 LKPGVSLASVMYS 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  130 bits (328), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 11/237 (4%)

Query: 30  VIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS 88
           + K +++ G++ YV++VY  A+++      +F F R  +P++TFSI    F+L + G   
Sbjct: 35  ITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKITFSIFMQLFILGLLGPVI 94

Query: 89  SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGG 148
            Q F ++G++Y+SPT S AM N++PA TF+LA++FR+E L+ +    QAK  GT  ++ G
Sbjct: 95  DQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLWCQAKIAGTVVTVAG 154

Query: 149 AFVVTFYKGPPL---------IGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF 199
           A ++T YKGP +         I + SH+ +      S    ++ G   L       ++ F
Sbjct: 155 AMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGSILLIFATLAWASLF 214

Query: 200 ILQALILRKFAAVLIIMFYLF-FFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYS 255
           +LQA IL+ +A   + +  L  F  T+ + A   ++   PS W++G D+ L+A  YS
Sbjct: 215 VLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAWRIGWDMNLLAAAYS 271

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/254 (33%), Positives = 138/254 (54%), Gaps = 10/254 (3%)

Query: 8   MRAALPSVGMVIVLLAQVSNMEVI-KAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRS 66
           M  A P + MV VL   ++ M+++ KA ++KG++ YV++VY  A++++     +F F + 
Sbjct: 10  MEKARPFISMV-VLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKK 68

Query: 67  ERPQLTFSILCSFFLLSVFG----CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
            RP++T  I   FF +S+ G       Q   ++G++Y++ T +TAM N++PA TFVLA I
Sbjct: 69  VRPKMTLMI---FFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYI 125

Query: 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182
           F LE++      S  K +GT A++GGA ++T  KGP L    +   S      +   S I
Sbjct: 126 FGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAI 185

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDW 241
            G   +    F  + + ILQA+ LR + A L +  ++    TI  TA AL++    PS W
Sbjct: 186 KGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAW 245

Query: 242 KLGLDIGLVAVLYS 255
            +G D  L+   YS
Sbjct: 246 AIGWDTKLLTATYS 259

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/248 (35%), Positives = 137/248 (55%), Gaps = 9/248 (3%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R  +P   M+ +    V +  + KAA  +G + YV + Y+   ++L  L  S +F RS  
Sbjct: 13  RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR+E+
Sbjct: 73  LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFF 187
           +   + ++QAK +GT  SI GA V+  YKGP L+   S +        S + SWI+GG  
Sbjct: 133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFT--------SFESSWIIGGLL 184

Query: 188 LAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI 247
           L  +  + S WFILQ  I+  +   + ++F      T++S    L+V  + + W+L    
Sbjct: 185 LGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGF 244

Query: 248 GLVAVLYS 255
            L +V+YS
Sbjct: 245 SLASVIYS 252

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M130|WTR29_ARATH WAT1-related protein At4g01440 OS=Arabidopsis thaliana GN=At4g01440 PE=2 SV=1

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 133/247 (53%), Gaps = 5/247 (2%)

Query: 13  PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT 72
           P + MV++  A      ++K  +  G+N  VI  Y  A+S+LF    +F + R  RP LT
Sbjct: 10  PVIIMVMINSALGLANALVKKVLDGGVNHMVIATYRLAISTLFLAPIAFFWERKTRPTLT 69

Query: 73  FSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
            +IL   F  ++ G S +Q F  +G+ Y+S TL+ A +++ PA TFV+A+IFR+EKLN +
Sbjct: 70  LNILVQLFFSALVGASLTQYFFLLGLSYTSATLACAFISMTPAITFVMALIFRVEKLNMK 129

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPL--IGEL-SHSGSPRRLLLSPQLSWILGGFFL 188
           +K+     +G    IGGA ++T YKG PL  + +L +H        + P+ +WI+G   L
Sbjct: 130 SKAGMGMVMGALICIGGALLLTMYKGVPLTKLRKLETHQLINNNHAMKPE-NWIIGCVLL 188

Query: 189 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG 248
            A +    +W ++QA +  K+         L FF TI     +LI   + + W L   + 
Sbjct: 189 FAGSSCFGSWMLIQAKVNEKYPCQYSSTVVLSFFGTIQCALLSLIKSRDITAWILTDKLD 248

Query: 249 LVAVLYS 255
           +V ++Y+
Sbjct: 249 IVTIVYA 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q56X95|WTR23_ARATH WAT1-related protein At3g28130 OS=Arabidopsis thaliana GN=At3g28130 PE=2 SV=1

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/259 (35%), Positives = 139/259 (53%), Gaps = 22/259 (8%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS-FLFHRSE 67
           R A+    M+      V+   + KAA SKG+N Y  ++YS  + S+  L    F +    
Sbjct: 9   RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRS 68

Query: 68  RPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P L+ SILC   +L + G +  I  F+GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct: 69  LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQL-------- 179
            +++ KSS AK +GT  S+ GA VV  Y GP +    + S  P      PQL        
Sbjct: 129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRV---FTPSSPPF-----PQLRQLLLPLS 180

Query: 180 ----SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIV- 234
                WI+GG  LA +  +    FILQA I++ + A   + F+ F   +IL++   ++  
Sbjct: 181 SSNSDWIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAE 240

Query: 235 VSEPSDWKLGLDIGLVAVL 253
            + PS W +  DI LV ++
Sbjct: 241 KNNPSIWIIHFDITLVCIV 259

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 17/256 (6%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP + MV+V +         K AM  G+   +++ Y    +++     +F   R  RP++
Sbjct: 7   LPFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKI 66

Query: 72  TFSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNW 130
           T  IL   F  S+ G + +Q+  FVG+Q SSPT++ A+ NL+PA TF+LA IFR E +  
Sbjct: 67  TLRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGI 126

Query: 131 ENKSSQAKSLGTFASIGGAFVVTFYKGPPL-IGE----------LSHSGSPRRLLLSPQL 179
           +  S QAK +GT   + GA V++FY G  + IGE          ++  GS      S   
Sbjct: 127 KKASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHWAYAENITKHGSS-----SGHS 181

Query: 180 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPS 239
           ++ LG F + A A   +AWFI+Q  +   FAA       +    +I   A ALI     S
Sbjct: 182 NFFLGPFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGSIQCGAIALISDHTIS 241

Query: 240 DWKLGLDIGLVAVLYS 255
           DW L   +  ++ LY+
Sbjct: 242 DWSLSSPLRFISALYA 257

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
255581160	356	Auxin-induced protein 5NG4, putative [Ri	0.891	0.741	0.622	4e-84
356502002	351	PREDICTED: auxin-induced protein 5NG4-li	0.831	0.700	0.550	2e-69
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.847	0.725	0.556	1e-68
356497781	351	PREDICTED: LOW QUALITY PROTEIN: auxin-in	0.827	0.698	0.548	2e-67
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.834	0.707	0.530	8e-63
224057230	355	predicted protein [Populus trichocarpa]	0.888	0.740	0.490	2e-62
356497783	347	PREDICTED: auxin-induced protein 5NG4-li	0.868	0.740	0.501	4e-62
388502250	352	unknown [Medicago truncatula]	0.831	0.698	0.526	9e-62
357486015	598	Auxin-induced protein 5NG4 [Medicago tru	0.831	0.411	0.526	1e-61
224099697	355	predicted protein [Populus trichocarpa]	0.834	0.695	0.505	2e-59

>gi|255581160|ref|XP_002531393.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528986|gb|EEF30977.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  317 bits (812), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 165/265 (62%), Positives = 202/265 (76%), Gaps = 1/265 (0%)

Query: 1   MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS 60
           MG    ++R+ LP VGMV+ +LAQ SNMEV K A+S+GINKYVIIVYSDALS+L  L CS
Sbjct: 1   MGFMPCNIRSLLPFVGMVVAMLAQASNMEVTKLALSQGINKYVIIVYSDALSTLVLLPCS 60

Query: 61  FLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120
           F+ HRS+R  L FS+LC FFLLSVFG  +QI  +VG+QYSSPTL TAMLNLIPAFTF+LA
Sbjct: 61  FIIHRSDRTPLDFSLLCKFFLLSVFGWCAQICGYVGLQYSSPTLGTAMLNLIPAFTFILA 120

Query: 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180
           IIFRLEKL+  +KSS AKSLGT  SI GAFVVTFY+GP + G  SH     +L  SPQ  
Sbjct: 121 IIFRLEKLDRRSKSSIAKSLGTIVSIAGAFVVTFYEGPTVFGIASHIKESHQLFHSPQFF 180

Query: 181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSD 240
           W++G  FLAAEA M+SAW+ILQ  IL+KF AVLII+ YL FFNT+LS  FALIVV + + 
Sbjct: 181 WMIGALFLAAEALMDSAWYILQTFILKKFPAVLIIICYLCFFNTVLSAIFALIVVEDRNS 240

Query: 241 WKLGLDIGLVAVLYS-LLALGFELA 264
           WK+  +IGL  +LY+ ++ L F ++
Sbjct: 241 WKIKPNIGLATILYTAVIGLAFRIS 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502002|ref|XP_003519811.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 136/247 (55%), Positives = 179/247 (72%), Gaps = 1/247 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP +GMV+V+LAQ  +M VIK AMS GINKYV++VYS ALS++  L  +   HRSERP L
Sbjct: 12  LPFLGMVLVMLAQSGSMVVIKVAMSDGINKYVMVVYSLALSTILLLPFALFLHRSERPPL 71

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS LC FFLL++FG S QI ++VGI  SS TL++AMLNLIPAFTF+LA+IFR+E+++W 
Sbjct: 72  TFSALCCFFLLAIFGSSGQIMAYVGIDLSSATLASAMLNLIPAFTFILALIFRMEEVHWR 131

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK LGT  SIGGAFVV  YKGPP+  +   S S  +L  S Q++WILGG F   +
Sbjct: 132 HSSSQAKVLGTLISIGGAFVVILYKGPPIF-KTHWSNSSNKLQFSQQINWILGGIFCVGD 190

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           + + S W+I QA +  KF AV +I+F+   F+TI    FALI V +P++W+L  DIGL+ 
Sbjct: 191 SIVCSLWYIYQASVAHKFPAVTVIVFFQLLFSTIQCAVFALIAVPDPTEWELKFDIGLIG 250

Query: 252 VLYSLLA 258
           +LY  +A
Sbjct: 251 ILYQAIA 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 142/255 (55%), Positives = 189/255 (74%), Gaps = 4/255 (1%)

Query: 1   MGVDMGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCS 60
           MGV MG++  +LP +GMVIV+  QV+NM V K AMS G++ +V+++YS+A+S++  L  S
Sbjct: 1   MGV-MGTV--SLPFLGMVIVVFTQVTNMIVSKMAMSNGLSSFVLVLYSNAISAVILLPLS 57

Query: 61  FLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA 120
            LFHRS RP LTFSILC FFLL++ GC +QIF + G+QYSSPTL +AMLNL+PAFTF+LA
Sbjct: 58  LLFHRSPRPPLTFSILCRFFLLALIGCFAQIFGYAGVQYSSPTLGSAMLNLVPAFTFILA 117

Query: 121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS 180
           +I R+EKL  +  SS AKS+G   S+ GAFVVTFYKGPP++   S S S  + + S Q  
Sbjct: 118 VICRMEKLELKKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQ-IFSSQSH 176

Query: 181 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSD 240
           W+LGGF LA E+ + S W+ILQA IL+K  AVL I F+  FF +I+S A +L+   +PS 
Sbjct: 177 WVLGGFLLADESLLASMWYILQATILKKHPAVLTITFFYCFFISIISLAISLVAERDPSA 236

Query: 241 WKLGLDIGLVAVLYS 255
           W+L LD+GL+AVLYS
Sbjct: 237 WRLKLDVGLLAVLYS 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497781|ref|XP_003517736.1| PREDICTED: LOW QUALITY PROTEIN: auxin-induced protein 5NG4-like [Glycine max]

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 135/246 (54%), Positives = 178/246 (72%), Gaps = 1/246 (0%)

Query: 13  PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLT 72
           P +GMV+ +LAQ  +M VIK AM+ GINKYV++VYS ALS++  L  +   HRSERP LT
Sbjct: 13  PFLGMVMAMLAQSGSMVVIKVAMTDGINKYVMVVYSLALSTILLLPFALFLHRSERPPLT 72

Query: 73  FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWEN 132
           FS LCSFFLL+ FG S QI ++VGI  SSPTL++AMLNLIPAFTF+LA+IFR+E+++W++
Sbjct: 73  FSALCSFFLLAFFGSSGQIMAYVGIDLSSPTLASAMLNLIPAFTFILALIFRMEEVHWKH 132

Query: 133 KSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEA 192
            SSQAK LGT  SI GAFVV  YKGPP+  +   S S  + L S QL+WILGG F A ++
Sbjct: 133 SSSQAKFLGTIVSIAGAFVVILYKGPPIF-KTHLSNSSNKFLFSQQLNWILGGMFCAGDS 191

Query: 193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAV 252
            + S W+I QA +  K+ AV  I+F+   F+TI    FALIVV   ++W+L LDIGL+ +
Sbjct: 192 IVCSLWYIYQASVAYKYPAVTTIVFFQLLFSTIQCGVFALIVVQXSNEWELKLDIGLIGI 251

Query: 253 LYSLLA 258
           +Y  +A
Sbjct: 252 VYQAIA 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  246 bits (628), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 132/249 (53%), Positives = 173/249 (69%), Gaps = 2/249 (0%)

Query: 7   SMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRS 66
            M+ ALP VGMVI   AQV  M + K AMSKG++ ++ + YS+AL+SL  L  S L  R+
Sbjct: 2   GMKVALPFVGMVIAECAQVGLMIISKVAMSKGMSSFIFVCYSNALASLILLPFSLLHRRT 61

Query: 67  ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLE 126
           ERP LTFSI+C FFLL +FGC +Q F + GI  SSPTL TAMLNL+P  TF+LA+ FR+E
Sbjct: 62  ERPPLTFSIVCGFFLLGLFGCLAQFFGYAGINLSSPTLGTAMLNLVPGLTFILAVAFRME 121

Query: 127 KLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGF 186
           KL+    SS AKS+GT  S+GGAF++T+YKGP ++  L+ S +    LL+   +WI+GG 
Sbjct: 122 KLDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVL--LTPSLNSSHQLLTQPSNWIIGGL 179

Query: 187 FLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLD 246
            LAA+  M SAW I+QALIL+ + A LII+F+  FF TILS    L+V  +PS W L  +
Sbjct: 180 LLAADCVMTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDPSAWSLIPN 239

Query: 247 IGLVAVLYS 255
           I LV+VLYS
Sbjct: 240 IRLVSVLYS 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (626), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 132/269 (49%), Positives = 181/269 (67%), Gaps = 6/269 (2%)

Query: 5   MGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH 64
           M    A LP VGMV+   AQ   M + KAAMS G++ +V ++YS+A++ L  L  SFLFH
Sbjct: 1   MARKVAVLPIVGMVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFH 60

Query: 65  RS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIF 123
           RS ERP LT SI+  FFLL +FGC  Q F + GI  SSPTL TAMLNL+P  TF+LAIIF
Sbjct: 61  RSSERPPLTLSIVSGFFLLGLFGCLGQSFCYAGINLSSPTLGTAMLNLVPGLTFILAIIF 120

Query: 124 RLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL 183
           R+E ++W++ S+ AKS+GT  SIGGAF+VT YKGP L+  L         +L  Q +W+L
Sbjct: 121 RMENVDWKSYSTLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSVTKSSHQVLLQQSNWVL 180

Query: 184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL 243
           GG  +A +    S+W I+QALIL+K++A LI++F+ FFF+TILS+  ++++  +PS W L
Sbjct: 181 GGLLMAVDCATASSWLIVQALILKKYSAKLIVVFFHFFFSTILSSIVSVVMERDPSAWSL 240

Query: 244 GLDIGLVAVLYS-LLALGFELA----CAH 267
             +I L+AVL+S +L   FE+     C H
Sbjct: 241 NSNIRLIAVLFSGILGNAFEIGVTAWCVH 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497783|ref|XP_003517737.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 132/263 (50%), Positives = 179/263 (68%), Gaps = 6/263 (2%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP +GM++ +L Q  +M VIK AM+ G+NKYV++VYS ALSS   L      HRSE P L
Sbjct: 12  LPFLGMLMAMLTQSGSMVVIKFAMTDGMNKYVMVVYSMALSSSILLPFVLFLHRSELPLL 71

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           T   L SFFLL++F  S+ I ++VGI+ SSPTL++A+LN+IPAFTFVLA+IFR+E+++W 
Sbjct: 72  TVPALGSFFLLALFASSAHIMAYVGIELSSPTLASAILNVIPAFTFVLALIFRMEEVHWR 131

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
             SSQAK LGT  SIGGAFVV  YKGPP+    S S +  +L  S Q +WILGG FL A+
Sbjct: 132 YFSSQAKVLGTIVSIGGAFVVILYKGPPIFRTHS-SYTSNKLQFSAQPNWILGGIFLVAD 190

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           +F++S W+I QA + +K+ AV +I+F+ F F+TI    FALI V +P++W+L  D GL  
Sbjct: 191 SFLSSMWYIYQASVAKKYPAVTVIVFFQFLFSTIQCGVFALIAVRDPTEWELKFDRGLSV 250

Query: 252 VLY-----SLLALGFELACAHGA 269
           +LY     ++L       C H A
Sbjct: 251 ILYQAIVATMLRYTLTTWCVHRA 273

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502250|gb|AFK39191.1| unknown [Medicago truncatula]

 Score =  243 bits (619), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 130/247 (52%), Positives = 181/247 (73%), Gaps = 1/247 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP VGM+I +LAQ  +M VIK AM  G+NKYV++VYS  LSS+  L  +   +RS+RP L
Sbjct: 14  LPFVGMIISVLAQSGSMVVIKFAMKDGMNKYVMVVYSMGLSSILLLPLALFINRSQRPPL 73

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS L SFFLL++ G S+QI ++ GI+ SSPTL++AMLNLIPAFTFVLA+IFR+E++ W 
Sbjct: 74  TFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALIFRMERIYWR 133

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK++GT  S+ GAFVV  YKGPP++ ++  S S   L  SP L+WILGGF  A +
Sbjct: 134 HFSSQAKAIGTIVSMAGAFVVILYKGPPIL-KIHSSISYNTLQFSPNLNWILGGFLCAGD 192

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           + ++S W+I Q  + +K+ AV++I+F+   F TI +  +ALIVV +PS W+L LD+GL+ 
Sbjct: 193 SLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQTGVYALIVVRDPSAWELKLDMGLIV 252

Query: 252 VLYSLLA 258
           +LY  +A
Sbjct: 253 ILYQAVA 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486015|ref|XP_003613295.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355514630|gb|AES96253.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 130/247 (52%), Positives = 181/247 (73%), Gaps = 1/247 (0%)

Query: 12  LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL 71
           LP VGM+I +LAQ  +M VIK AM  G+NKYV++VYS  LSS+  L  +   +RS+RP L
Sbjct: 260 LPFVGMIISVLAQSGSMVVIKFAMKDGMNKYVMVVYSMGLSSILLLPLALFINRSQRPPL 319

Query: 72  TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWE 131
           TFS L SFFLL++ G S+QI ++ GI+ SSPTL++AMLNLIPAFTFVLA+IFR+E++ W 
Sbjct: 320 TFSALWSFFLLALIGSSAQIMTYGGIELSSPTLASAMLNLIPAFTFVLALIFRMERIYWR 379

Query: 132 NKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAE 191
           + SSQAK++GT  S+ GAFVV  YKGPP++ ++  S S   L  SP L+WILGGF  A +
Sbjct: 380 HFSSQAKAIGTIVSMAGAFVVILYKGPPIL-KIHSSISYNTLQFSPNLNWILGGFLCAGD 438

Query: 192 AFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA 251
           + ++S W+I Q  + +K+ AV++I+F+   F TI +  +ALIVV +PS W+L LD+GL+ 
Sbjct: 439 SLLSSMWYIYQVSVTKKYPAVIVIVFFQVVFITIQTGVYALIVVRDPSAWELKLDMGLIV 498

Query: 252 VLYSLLA 258
           +LY  +A
Sbjct: 499 ILYQAVA 505

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/253 (50%), Positives = 167/253 (66%), Gaps = 6/253 (2%)

Query: 8   MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE 67
           ++AA P VGMV+   AQV  M + KAAMS G+  ++ ++YS+AL+SL  L  SF  HRSE
Sbjct: 3   LKAAAPFVGMVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLHRSE 62

Query: 68  RPQLTFSILCSFFLLSVFGCS-----SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
           RP LTF ILC FFLL +FG +       IF + GI  SS TL TAMLNLIP  TF+LA+ 
Sbjct: 63  RPPLTFPILCGFFLLGLFGYAILIYFDFIFGYAGINLSSATLGTAMLNLIPGLTFILAVA 122

Query: 123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI 182
           FR+EKL+W++ S+  KS GT  S+ GAF+V +YKGPPL+   S S  P   LLS Q +WI
Sbjct: 123 FRMEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLLMAPSTSNLPHE-LLSQQQNWI 181

Query: 183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
           +GG  LA +  M SAW I+QALIL+K+ A LI++F+  F  TILST   L +  +P  W 
Sbjct: 182 IGGLLLAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSVTILSTIVCLFMERDPGAWS 241

Query: 243 LGLDIGLVAVLYS 255
           L   +  +AV+YS
Sbjct: 242 LKPTVRWIAVVYS 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.820	0.662	0.390	8.9e-38
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.827	0.690	0.346	1.5e-33
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.807	0.688	0.326	1.4e-32
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.834	0.667	0.316	2.6e-31
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.780	0.681	0.346	2.6e-31
TAIR|locus:2091383	360	UMAMIT46 "AT3G28070" [Arabidop	0.827	0.680	0.334	1.3e-29
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.777	0.572	0.305	1.6e-29
TAIR|locus:2091338	353	UMAMIT45 "AT3G28100" [Arabidop	0.827	0.694	0.326	5.6e-29
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.824	0.642	0.318	5.6e-29
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.824	0.652	0.318	1.2e-28

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 98/251 (39%), Positives = 135/251 (53%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  LP   +VI+  A V    + KAA  KG++ +V IVYS                RS  
Sbjct:     8 REVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLFCSFRSRT 67

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P + FSIL    LL + GC S I  + GI YSSPTL++A+ NL PAFTF+LA++FR+E 
Sbjct:    68 LPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLAVVFRMES 127

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFF 187
             ++++  SS AK LGT  SIGGAF+VT Y GP +I +                 WILG  F
Sbjct:   128 VSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVSLRSQSTNPN--WILGAGF 185

Query:   188 LAAEAFMNSAWFILQALILRKFAAVL-IIMFYLF--FFNTILSTAFALIVVSEPSDWKLG 244
             LA E F    W+I+Q  I+R++ A   ++ FY     F T L T F     ++   WK+ 
Sbjct:   186 LAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFT--EGNDLGAWKIK 243

Query:   245 LDIGLVAVLYS 255
              +I LV+++ S
Sbjct:   244 PNIALVSIVCS 254

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 87/251 (34%), Positives = 130/251 (51%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M+      V+   + KAA SKG+N Y  ++YS               +RS  
Sbjct:     9 RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRS 68

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SILC   +L + G +  I  F+GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    69 LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGP----PLIGEXXXXXXXXXXXXXXXXXWIL 183
              +++ KSS AK +GT  S+ GA VV  Y GP    P                     WI+
Sbjct:   129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVFTPSSPPFPQLRQLLLPLSSSNSDWII 188

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSDWK 242
             GG  LA +  +    FILQA I++ + A   + F+ F   +IL++   ++   + PS W 
Sbjct:   189 GGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNPSIWI 248

Query:   243 LGLDIGLVAVL 253
             +  DI LV ++
Sbjct:   249 IHFDITLVCIV 259

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 81/248 (32%), Positives = 125/248 (50%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  +P   M+ +    V +  + KAA  +G + YV + Y+                RS  
Sbjct:    13 RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P    S+    FLL++ G +S++    GI+YSSPTLS+A+ NL PAFTF+LAI FR+E+
Sbjct:    73 LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFF 187
             +   + ++QAK +GT  SI GA V+  YKGP L+                   WI+GG  
Sbjct:   133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLL--------VAASFTSFESSWIIGGLL 184

Query:   188 LAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDI 247
             L  +  + S WFILQ  I+  +   + ++F      T++S    L+V  + + W+L    
Sbjct:   185 LGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKPGF 244

Query:   248 GLVAVLYS 255
              L +V+YS
Sbjct:   245 SLASVIYS 252

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 80/253 (31%), Positives = 126/253 (49%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R  +P   MV V    V +  + KAA  +G++ YV + Y+                RS+R
Sbjct:    17 RDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKR 76

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P     +  + FLL++ G  S I    GI+YSSPTL++A+ NL PAFTF LA+IFR+E+
Sbjct:    77 LPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQ 136

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXX-----XXXXXXXXXXXXXWI 182
             +   + ++QAK +GT  SI GA VV  YKGP ++ +                      WI
Sbjct:   137 IVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLTSFDSSWI 196

Query:   183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK 242
             +GG  LA +  + S W+ILQ  ++  +   + ++F      T++S    L    + + + 
Sbjct:   197 IGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNSFI 256

Query:   243 LGLDIGLVAVLYS 255
             L   + L +V+YS
Sbjct:   257 LKPGVSLASVMYS 269

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 86/248 (34%), Positives = 132/248 (53%)

Query:    17 MVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER-PQLTFSI 75
             MV+   + V    ++KAA SKG++ +V++VYS                RS   P LTFSI
Sbjct:    17 MVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFSI 76

Query:    76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSS 135
             LC+  +L +   + QI  + GI+YSSPTLS+AM N+ PAFTF+LA++FR+E ++   KSS
Sbjct:    77 LCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKSS 136

Query:   136 QAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWILGGFFLAAEAFMN 195
              AK LGT  SI GA VVT Y GP L+                   WI+GG  LA +  + 
Sbjct:   137 VAKVLGTILSIIGALVVTLYHGPMLMSSHSD--------------WIIGGGLLALQYILV 182

Query:   196 SAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLY 254
             S  +++ A  + ++ +AV++ + +      + +    L     P  W +  DI L+ V+ 
Sbjct:   183 SVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLITVVA 242

Query:   255 S-LLALGF 261
             + +L  G+
Sbjct:   243 TGILNSGY 250

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2091383 UMAMIT46 "AT3G28070" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 84/251 (33%), Positives = 125/251 (49%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M++V  + V    + K A SKG+N Y  + YS               +RS  
Sbjct:    13 REAVFLTAMLVVETSVVGISTLFKFATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSSS 72

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SIL    LL   G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    73 LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSSPTLASAINNITPALTFILAIIFRMEK 132

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWIL 183
             ++++ +SS AK +GT  S+ GA VV FY GP +                        W++
Sbjct:   133 VSFKERSSLAKLMGTILSLIGALVVIFYHGPRVFLASSPPYVNFRQFSPPLSSSNSDWLI 192

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWK 242
             GG  L  +    S  FILQA I+  + A   + F Y    + + ST   ++  + PS W 
Sbjct:   193 GGALLTMQGIFVSVSFILQAHIMSVYPAAFRVSFLYTVCVSIVTSTIGLVVEKNNPSVWI 252

Query:   243 LGLDIGLVAVL 253
             +  DI L+ ++
Sbjct:   253 IHFDITLITIV 263

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 74/242 (30%), Positives = 124/242 (51%)

Query:    26 SNMEVI-KAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSERPQLTFSILCSFFLLSV 84
             + M +I K +++ G++ YV++VY  A              R  +P++TFSI    F+L +
Sbjct:    30 AGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKITFSIFMQLFILGL 89

Query:    85 FG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTF 143
              G    Q F ++G++Y+SPT S AM N++PA TF+LA++FR+E L+ +    QAK  GT 
Sbjct:    90 LGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKKLWCQAKIAGTV 149

Query:   144 ASIGGAFVVTFYKGPPL---------IGEXXXXXXXXXXXXXXXXXWILGGFFLAAEAFM 194
              ++ GA ++T YKGP +         I +                 ++ G   L      
Sbjct:   150 VTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLKGSILLIFATLA 209

Query:   195 NSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVL 253
              ++ F+LQA IL+ +A   L +   + F  T+ + A   ++   PS W++G D+ L+A  
Sbjct:   210 WASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAWRIGWDMNLLAAA 269

Query:   254 YS 255
             YS
Sbjct:   270 YS 271

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091338 UMAMIT45 "AT3G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 82/251 (32%), Positives = 121/251 (48%)

Query:     9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSER 68
             R A+    M+      V    + K A SKG+N Y  + YS                RS  
Sbjct:    10 REAVFLTAMLATETGVVGISTLFKVATSKGLNLYAFLGYSYLLASLLLLPSLFFTDRSRS 69

Query:    69 -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
              P L+ SIL    LL + G    I  ++GI+YSSPTL++A+ N+ PA TF+LAIIFR+EK
Sbjct:    70 LPPLSLSILSKIGLLGLLGSMYVITGYIGIEYSSPTLASAISNITPALTFILAIIFRMEK 129

Query:   128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXX----XXXXXXXXXXXXXXXWIL 183
             ++++ +SS AK +GT  S+ GA VV  Y GP +                        W++
Sbjct:   130 VSFKERSSVAKVMGTILSLIGALVVVLYHGPRVFVASSPPYINFRQLSPPLSSSNSDWLI 189

Query:   184 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVV-SEPSDWK 242
             GG  L       S  FILQA I+  + A   + F      +I+++   L+V  + PS W 
Sbjct:   190 GGALLTIRDIFVSVSFILQAKIMSTYPAAFTVSFLYIVSVSIVTSMIGLVVEKNNPSVWI 249

Query:   243 LGLDIGLVAVL 253
             +  DI L+ ++
Sbjct:   250 IRFDITLITIV 260

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 81/254 (31%), Positives = 127/254 (50%)

Query:     8 MRAALPSVGMVIVLLAQVSNMEVI-KAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRS 66
             M  A P + MV VL   ++ M+++ KA ++KG++ YV++VY  A              + 
Sbjct:    10 MEKARPFISMV-VLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKK 68

Query:    67 ERPQLTFSILCSFFLLSVFGCSSQIFS----FVGIQYSSPTLSTAMLNLIPAFTFVLAII 122
              RP++T  I   FF +S+ G    +      ++G++Y++ T +TAM N++PA TFVLA I
Sbjct:    69 VRPKMTLMI---FFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYI 125

Query:   123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEXXXXXXXXXXXXXXXXXWI 182
             F LE++      S  K +GT A++GGA ++T  KGP L                     I
Sbjct:   126 FGLERVKLRCIRSTGKVVGTLATVGGAMIMTLVKGPVLDLFWTKGVSAHNTAGTDIHSAI 185

Query:   183 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDW 241
              G   +    F  + + ILQA+ LR + A L +  ++    TI  TA AL++    PS W
Sbjct:   186 KGAVLVTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAW 245

Query:   242 KLGLDIGLVAVLYS 255
              +G D  L+   YS
Sbjct:   246 AIGWDTKLLTATYS 259

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 80/251 (31%), Positives = 117/251 (46%)

Query:    12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDAXXXXXXXXXXXXXHRSERPQL 71
             LP + MV+V +         K AM  G+   +++ Y                 R  RP++
Sbjct:     7 LPFLAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKTRPKI 66

Query:    72 TFSILCSFFLLSVFGCS-SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNW 130
             T  IL   F  S+ G + +Q+  FVG+Q SSPT++ A+ NL+PA TF+LA IFR E +  
Sbjct:    67 TLRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGI 126

Query:   131 ENKSSQAKSLGTFASIGGAFVVTFYKGPPL-IGEXX-----XXXXXXXXXXXXXXXWILG 184
             +  S QAK +GT   + GA V++FY G  + IGE                      + LG
Sbjct:   127 KKASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHWAYAENITKHGSSSGHSNFFLG 186

Query:   185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG 244
              F + A A   +AWFI+Q  +   FAA       +    +I   A ALI     SDW L 
Sbjct:   187 PFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGSIQCGAIALISDHTISDWSLS 246

Query:   245 LDIGLVAVLYS 255
               +  ++ LY+
Sbjct:   247 SPLRFISALYA 257

GO:0016020 "membrane" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	7e-37

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  134 bits (338), Expect = 7e-37
 Identities = 95/255 (37%), Positives = 140/255 (54%), Gaps = 14/255 (5%)

Query: 9   RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER 68
           R A+    M+    + V    + K A SKG+N Y  + YS  L+SL  L   F  +RS  
Sbjct: 10  REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRS 69

Query: 69  -PQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEK 127
            P L+ SIL    LL   G    I  ++GI+YS+PTL++A+ N+ PA TF+LAIIFR+EK
Sbjct: 70  LPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEK 129

Query: 128 LNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL---LLSPQLS---- 180
           ++++ +SS AK +GT  S+ GA VV FY GP     +  + SP  L    LSP LS    
Sbjct: 130 VSFKERSSVAKVMGTILSLIGALVVIFYHGP----RVFVASSPPYLNFRQLSPPLSSSNS 185

Query: 181 -WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIV-VSEP 238
            W++GG  L  +    S  FILQA I+ ++ A   + F      +I+++   L+V  + P
Sbjct: 186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNP 245

Query: 239 SDWKLGLDIGLVAVL 253
           S W +  DI L+ ++
Sbjct: 246 SVWIIHFDITLITIV 260

Length = 358

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	99.96
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.96
PRK11689	295	aromatic amino acid exporter; Provisional	99.95
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.95
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.95
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.94
PRK15430	296	putative chloramphenical resistance permease RarD;	99.94
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.9
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.88
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.87
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.82
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.76
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.64
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.58
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.55
COG2962	293	RarD Predicted permeases [General function predict	99.53
COG2510	140	Predicted membrane protein [Function unknown]	99.5
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.38
KOG2765	416	consensus Predicted membrane protein [Function unk	99.36
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.34
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.3
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.21
PRK11272	292	putative DMT superfamily transporter inner membran	99.0
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.96
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.9
PRK11689	295	aromatic amino acid exporter; Provisional	98.84
PLN00411	358	nodulin MtN21 family protein; Provisional	98.77
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.73
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.71
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.71
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.7
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.68
KOG2766	336	consensus Predicted membrane protein [Function unk	98.67
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.59
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.55
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.46
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	98.39
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.38
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.31
PRK15430	296	putative chloramphenical resistance permease RarD;	98.31
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.19
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.15
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.92
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.86
KOG1580	337	consensus UDP-galactose transporter related protei	97.82
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.81
COG2510	140	Predicted membrane protein [Function unknown]	97.57
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.54
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.53
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.48
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.24
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	97.24
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.2
PRK13499	345	rhamnose-proton symporter; Provisional	97.15
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.12
KOG1581	327	consensus UDP-galactose transporter related protei	97.04
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.01
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	96.96
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.93
PRK13499	345	rhamnose-proton symporter; Provisional	96.68
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.55
COG2962	293	RarD Predicted permeases [General function predict	96.41
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.25
KOG4510	346	consensus Permease of the drug/metabolite transpor	95.9
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	95.84
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	95.77
PRK09541	110	emrE multidrug efflux protein; Reviewed	95.76
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.6
COG2076	106	EmrE Membrane transporters of cations and cationic	95.57
PRK11431	105	multidrug efflux system protein; Provisional	95.35
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	93.42
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	93.32
KOG2765	416	consensus Predicted membrane protein [Function unk	93.31
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	93.09
KOG1580	337	consensus UDP-galactose transporter related protei	92.7
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	92.42
KOG2922	335	consensus Uncharacterized conserved protein [Funct	92.18
KOG1581	327	consensus UDP-galactose transporter related protei	91.57
KOG1582	367	consensus UDP-galactose transporter related protei	90.72
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	90.67
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	90.02
KOG1443	349	consensus Predicted integral membrane protein [Fun	88.75
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	87.66
KOG3912	372	consensus Predicted integral membrane protein [Gen	85.73
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	84.56
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	83.78
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	81.58

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=4e-35  Score=271.32  Aligned_cols=278  Identities=34%  Similarity=0.500  Sum_probs=217.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGCS   88 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~~g~~g~~   88 (296)
                      +.|+|+.++.+++..++..++.|.+++.+++|+.+.++|+.+|+++++++++.++|++ +++.+++++.++.+.|+++..
T Consensus        11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~   90 (358)
T PLN00411         11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM   90 (358)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999999887654433 344568888999999998866


Q ss_pred             HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCC--CC
Q 022504           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL--SH  166 (296)
Q Consensus        89 ~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~--~~  166 (296)
                      ++.+++.|++|+++++++++.+++|+++.+++++++.|+++.++|.+++|++|++++++|+.++...+++.....+  .+
T Consensus        91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~  170 (358)
T PLN00411         91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY  170 (358)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence            7779999999999999999999999999999999976777777777778999999999999988765443210000  00


Q ss_pred             CCC--CCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcC-CCccee
Q 022504          167 SGS--PRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKL  243 (296)
Q Consensus       167 ~~~--~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~  243 (296)
                      -|.  +......+..+...|+++.++++++||+|++++||..+++|++...++|+..++++.+.+.+...+++ ...|..
T Consensus       171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~  250 (358)
T PLN00411        171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWII  250 (358)
T ss_pred             ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCccccee
Confidence            000  00000011123467999999999999999999999999997666888999999988888877766543 233433


Q ss_pred             ccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeecccccHHHH
Q 022504          244 GLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSPWPLSSL  289 (296)
Q Consensus       244 ~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~~p~~~l  289 (296)
                      .++...+.++|.+++ +.++|.+|++++|+.||++ ++.+.+++++
T Consensus       251 ~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~-as~~~~L~PV  294 (358)
T PLN00411        251 HFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLY-LAIFKPLSIL  294 (358)
T ss_pred             ccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchH-HHHHHhHHHH
Confidence            333345678899975 6789999999999999999 7776655543

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.96  E-value=2.1e-27  Score=215.02  Aligned_cols=245  Identities=11%  Similarity=-0.007  Sum_probs=194.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 022504           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQI   91 (296)
Q Consensus        13 ~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~~~~   91 (296)
                      -.+.+++..++||.+++++|.+.+ ++||.+++++|+.+++++++++...+ |+++  .++++++.....|.++ ..++.
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~-~~~~--~~~~~~~~~~~~g~~~~~~~~~   84 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR-GHPL--PTLRQWLNAALIGLLLLAVGNG   84 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh-CCCC--CcHHHHHHHHHHHHHHHHHHHH
Confidence            356677899999999999999887 69999999999999999988876442 2222  3467888888899888 78888


Q ss_pred             HHHHHh-hccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCC
Q 022504           92 FSFVGI-QYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP  170 (296)
Q Consensus        92 ~~~~gl-~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~  170 (296)
                      +++.+. +++++++++++.++.|+++.+++.+ +|||++++      +++|++++++|+.++...++             
T Consensus        85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~~~-------------  144 (292)
T PRK11272         85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSGGN-------------  144 (292)
T ss_pred             HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcCcc-------------
Confidence            999999 9999999999999999999999975 69998766      59999999999988752110             


Q ss_pred             CcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHH
Q 022504          171 RRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLV  250 (296)
Q Consensus       171 ~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~  250 (296)
                           .  .....|+++.++++++||.|++..||..++.  +...+++++.++++.+.+.....+.+...  ..+...|.
T Consensus       145 -----~--~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  213 (292)
T PRK11272        145 -----L--SGNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLTA--LPTLSGFL  213 (292)
T ss_pred             -----c--ccchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCcccc--cCCHHHHH
Confidence                 0  1234699999999999999999999975543  35567899999988888776544332111  11223578


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCCceeeecc---cccHHH-HHHhh
Q 022504          251 AVLYSLLALGFELACAHGACRELDLFMYQCSS---PWPLSS-LLSWM  293 (296)
Q Consensus       251 ~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~---~~p~~~-l~~~~  293 (296)
                      .++|+++++|+++|.+|++++|+.+++. ++.   ++|+.+ +++|+
T Consensus       214 ~i~~l~i~~s~~~~~l~~~~~~~~~~~~-~s~~~~l~Pi~a~i~~~~  259 (292)
T PRK11272        214 ALGYLAVFGSIIAISAYMYLLRNVRPAL-ATSYAYVNPVVAVLLGTG  259 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999988 554   567774 67765

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.96  E-value=3e-27  Score=214.68  Aligned_cols=247  Identities=16%  Similarity=0.094  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHH
Q 022504           14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIF   92 (296)
Q Consensus        14 ~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~~~~~   92 (296)
                      .+.++.++++||.+++++|.+++ ++||.++.++|+.++++.++++.  + |++   .+++   .....|+.. ..++.+
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~~---~~~~---~~~~~g~~~~~~~~~~   75 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RPK---VPLN---LLLGYGLTISFGQFAF   75 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CCC---CchH---HHHHHHHHHHHHHHHH
Confidence            35678899999999999999987 59999999999999887765542  1 221   2232   344556655 566678


Q ss_pred             HHHHhhcc-CchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCC
Q 022504           93 SFVGIQYS-SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (296)
Q Consensus        93 ~~~gl~~t-sa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~  171 (296)
                      ++.+++|+ ++++++++.+++|+++.+++++++|||++++      +++|++++++|+.++... +.             
T Consensus        76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~~-~~-------------  135 (299)
T PRK11453         76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIED-SL-------------  135 (299)
T ss_pred             HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhccc-cC-------------
Confidence            88999985 7899999999999999999999999998766      599999999999887621 10             


Q ss_pred             cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHHHHHHhcCCC---cceeccc
Q 022504          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAV--LIIMFYLFFFNTILSTAFALIVVSEPS---DWKLGLD  246 (296)
Q Consensus       172 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~---~~~~~~~  246 (296)
                          .+......|+++.+.++++|+.|++++||..++.+++  .....++...+.++....+...+++..   .+...+.
T Consensus       136 ----~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (299)
T PRK11453        136 ----NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDM  211 (299)
T ss_pred             ----CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCH
Confidence                0111234699999999999999999999987765422  345567777776665555444443211   1111122


Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHhcCCceee--ecccccHH-HHHHhhh
Q 022504          247 IGLVAVLYSLLALGFELACAHGACRELDLFMYQ--CSSPWPLS-SLLSWMS  294 (296)
Q Consensus       247 ~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~--~s~~~p~~-~l~~~~~  294 (296)
                      ..|..++|+|+++|+++|.+|++++||.++.+.  .+.++|+. .+++|+.
T Consensus       212 ~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~  262 (299)
T PRK11453        212 TTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALL  262 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            358899999999999999999999999999872  23367877 4777763

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.95  E-value=1e-26  Score=210.91  Aligned_cols=251  Identities=14%  Similarity=0.092  Sum_probs=177.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~   88 (296)
                      |.+.++.++.++++||.+++.+|.+++ ++||+.+.++|+.+|+++++++.   ++++.++.++    +....+.++ ..
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~---~~~~~~~~~~----~~~~~~~l~~~~   73 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV---GFPRLRQFPK----RYLLAGGLLFVS   73 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc---cccccccccH----HHHHHHhHHHHH
Confidence            567888999999999999999999987 59999999999999999987652   1211111122    233445556 77


Q ss_pred             HHHHHHHHhhc----cCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCC
Q 022504           89 SQIFSFVGIQY----SSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL  164 (296)
Q Consensus        89 ~~~~~~~gl~~----tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~  164 (296)
                      ++.+++.++++    +++++++++.+++|+++.+++++++|||++++      +++|++++++|++++... ++....  
T Consensus        74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~--  144 (295)
T PRK11689         74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSL--  144 (295)
T ss_pred             HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchh--
Confidence            88888888765    57788899999999999999999999998766      699999999999888632 110000  


Q ss_pred             CCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceec
Q 022504          165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG  244 (296)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  244 (296)
                        +     +..++..+...|+++.++++++||.|+++.||..++++ +...  .+ ..+++.+.+.... ++++ ..+..
T Consensus       145 --~-----~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~-~~~~--~~-~~~~~~l~~~~~~-~~~~-~~~~~  211 (295)
T PRK11689        145 --A-----ELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGKN-GITL--FF-ILTALALWIKYFL-SPQP-AMVFS  211 (295)
T ss_pred             --h-----hhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCCC-chhH--HH-HHHHHHHHHHHHH-hcCc-cccCC
Confidence              0     00000012346999999999999999999999977764 5433  22 3333444433333 2221 11122


Q ss_pred             cchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeecc---cccHH-HHHHhh
Q 022504          245 LDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSS---PWPLS-SLLSWM  293 (296)
Q Consensus       245 ~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~---~~p~~-~l~~~~  293 (296)
                      + ..|..++|.++ +|+++|.+|++++|+.+|++ ++.   ++|+. .+++|+
T Consensus       212 ~-~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~-~s~~~~l~Pv~a~i~~~~  261 (295)
T PRK11689        212 L-PAIIKLLLAAA-AMGFGYAAWNVGILHGNMTL-LATASYFTPVLSAALAAL  261 (295)
T ss_pred             H-HHHHHHHHHHH-HHHHHHHHHHHHHHccCHHH-HHHHHHhHHHHHHHHHHH
Confidence            2 35777888885 79999999999999999998 555   45765 466654

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.95  E-value=4.1e-26  Score=202.58  Aligned_cols=232  Identities=17%  Similarity=0.105  Sum_probs=186.6

Q ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccCc
Q 022504           24 QVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSP  102 (296)
Q Consensus        24 wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~~~~~~~~gl~~tsa  102 (296)
                      ||.+++.+|..++++.||....+.|+..+.+++.++...  |     .+++++.+....|.++ ..++.+++.|++|+++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            899999999998877999999999999998887775432  2     2345667788888888 9999999999999999


Q ss_pred             hhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchh
Q 022504          103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI  182 (296)
Q Consensus       103 ~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  182 (296)
                      ++++++.++.|+++.+++.+++|||++++      +++|+.++++|+.++... ++                   .....
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~~-~~-------------------~~~~~  127 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLSD-GN-------------------LSINP  127 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhccC-Cc-------------------ccccH
Confidence            99999999999999999999999998766      589999999999887521 10                   11236


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHHHHhhhH
Q 022504          183 LGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGF  261 (296)
Q Consensus       183 ~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~gv~~t~  261 (296)
                      .|+++.++++++|+.+.+..||..++.+ ++...+.+++.++.+.+.+.....+++. .+   +...+..+++.+++++.
T Consensus       128 ~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~  203 (260)
T TIGR00950       128 AGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTA  203 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHH
Confidence            7999999999999999999999987764 2345566888899888888766543321 11   22346778999999999


Q ss_pred             HHHHHHHHHHhcCCceeeeccc---ccHH-HHHHhh
Q 022504          262 ELACAHGACRELDLFMYQCSSP---WPLS-SLLSWM  293 (296)
Q Consensus       262 ~ay~l~~~~l~~~g~~~~~s~~---~p~~-~l~~~~  293 (296)
                      ++|.+|++++|+.++.+ ++.+   +|+. .+++|+
T Consensus       204 ~~~~~~~~a~~~~~~~~-~s~~~~~~pv~~~ll~~~  238 (260)
T TIGR00950       204 LAYFLWNKGLTLVDPSA-ASILALAEPLVALLLGLL  238 (260)
T ss_pred             HHHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHHHH
Confidence            99999999999999988 6554   4555 466654

>TIGR00688 rarD rarD protein

Probab=99.95  E-value=1.1e-25  Score=199.93  Aligned_cols=242  Identities=10%  Similarity=-0.045  Sum_probs=169.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHH-HHHHHHHHHH
Q 022504           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSI-LCSFFLLSVF   85 (296)
Q Consensus        12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~-----~~~~~~~~-~~~~~~~g~~   85 (296)
                      |+++.+++++++||.+++++|. .+ ++||.++.++|+.+|++++.++...++|++     .++.++++ +......|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            5889999999999999999998 44 599999999999999988877654332211     11122232 3445566666


Q ss_pred             HHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCC
Q 022504           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS  165 (296)
Q Consensus        86 g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~  165 (296)
                      ...++.+++++++++++++++++.+++|+++.+++++++|||++++      +++|+.++++|++++...++        
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~--------  145 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG--------  145 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC--------
Confidence            6888999999999999999999999999999999999999998776      59999999999988752111        


Q ss_pred             CCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceecc
Q 022504          166 HSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGL  245 (296)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~  245 (296)
                                   ..    ..+.++++++||.|.+..||..++ + .......+ ........+... .++.+...+..+
T Consensus       146 -------------~~----~~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~  204 (256)
T TIGR00688       146 -------------SL----PWEALVLAFSFTAYGLIRKALKNT-D-LAGFCLET-LSLMPVAIYYLL-QTDFATVQQTNP  204 (256)
T ss_pred             -------------Cc----hHHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHHH-HHHHHHHHHHHH-HhccCcccccCc
Confidence                         01    135788999999999998887543 2 22221111 111111111111 112111111112


Q ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeeccc---ccHHH-HHHh
Q 022504          246 DIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSP---WPLSS-LLSW  292 (296)
Q Consensus       246 ~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~---~p~~~-l~~~  292 (296)
                      +..|..+++.|++ |.++|.+|++++|+.++++ ++.+   +|+.+ ++++
T Consensus       205 ~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~-~s~~~yl~Pv~~~~~~~  253 (256)
T TIGR00688       205 FPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNL-LGLLQYIGPTIMMLCVS  253 (256)
T ss_pred             hhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHH
Confidence            2257778888885 9999999999999999998 6654   46553 4443

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.94  E-value=4.4e-25  Score=199.99  Aligned_cols=247  Identities=9%  Similarity=-0.011  Sum_probs=187.5

Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Q 022504            5 MGSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSV   84 (296)
Q Consensus         5 ~~~~~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~   84 (296)
                      .+..++.+++..+++++++|+.+++++|.+.++ +||..+.++|+.+|+++++++...  +++  +.++|+++..+..|+
T Consensus         5 ~~~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~--~~~--~~~~~~~~~~~~~g~   79 (293)
T PRK10532          5 LRKLPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP--WRL--RFAKEQRLPLLFYGV   79 (293)
T ss_pred             ccccccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH--Hhc--cCCHHHHHHHHHHHH
Confidence            444567889999999999999999999999874 999999999999999988776422  221  245677778888888


Q ss_pred             HHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCC
Q 022504           85 FGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGEL  164 (296)
Q Consensus        85 ~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~  164 (296)
                      +....+.+++++++|++++.++++.++.|+++.+++    +||.+        +..++.++++|+.++... +.+     
T Consensus        80 ~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~~-~~~-----  141 (293)
T PRK10532         80 SLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLPL-GQD-----  141 (293)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeeec-CCC-----
Confidence            776667889999999999999999999999998776    24321        245678889999887521 110     


Q ss_pred             CCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceec
Q 022504          165 SHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG  244 (296)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  244 (296)
                                 . +.....|+++.++++++||.|++..||..++.+ +... .++..++++.+.++....+++ ..++  
T Consensus       142 -----------~-~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~--  204 (293)
T PRK10532        142 -----------V-SHVDLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAGE-ALWH--  204 (293)
T ss_pred             -----------c-ccCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccCc-ccCC--
Confidence                       1 112357999999999999999999999987764 5555 566677777777766543321 1111  


Q ss_pred             cchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeecc---cccHH-HHHHhh
Q 022504          245 LDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSS---PWPLS-SLLSWM  293 (296)
Q Consensus       245 ~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~---~~p~~-~l~~~~  293 (296)
                      + ..+..++|+|+++|.++|.+|++++||.+|++ ++.   .+|+. ++++|+
T Consensus       205 ~-~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~-as~~~~l~Pv~a~l~~~l  255 (293)
T PRK10532        205 W-SILPLGLAVAILSTALPYSLEMIALTRLPTRT-FGTLMSMEPALAAVSGMI  255 (293)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhH-HHHHHHhHHHHHHHHHHH
Confidence            1 23556789999999999999999999999988 665   45666 466664

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.94  E-value=2.5e-25  Score=201.88  Aligned_cols=249  Identities=13%  Similarity=0.012  Sum_probs=176.5

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--CC-CCHHHHHHHHHH
Q 022504            6 GSMRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--PQ-LTFSILCSFFLL   82 (296)
Q Consensus         6 ~~~~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~--~~-~~~~~~~~~~~~   82 (296)
                      +.+++.|+++.+++++++||.+++++|.. + ++||.++.++|+.++.++++++...+++++.  ++ .+++++.. ...
T Consensus         2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   78 (296)
T PRK15430          2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM-LAV   78 (296)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH-HHH
Confidence            44567889999999999999999999985 4 5999999999999999988776544321111  01 13444333 336


Q ss_pred             HHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCc
Q 022504           83 SVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLI  161 (296)
Q Consensus        83 g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~  161 (296)
                      +.++ ..++.++++|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|++++....|    
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~----  148 (296)
T PRK15430         79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFG----  148 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcC----
Confidence            6666 889999999999999999999999999999999999999998766      59999999999988762111    


Q ss_pred             CCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 022504          162 GELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSD  240 (296)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~  240 (296)
                                       ..    ..+.++++++||.|++..||..++. .+....+.++..++.....+.   .+.+...
T Consensus       149 -----------------~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  204 (296)
T PRK15430        149 -----------------SL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSH  204 (296)
T ss_pred             -----------------Cc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCccc
Confidence                             01    1467889999999999988864321 123444556665554442221   1111111


Q ss_pred             ceeccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeeccc---ccHH-HHHHhh
Q 022504          241 WKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSP---WPLS-SLLSWM  293 (296)
Q Consensus       241 ~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~---~p~~-~l~~~~  293 (296)
                      +.. .+..++..++.+.+.|.++|.+|++++|+.+|++ ++.+   +|+. .+++|+
T Consensus       205 ~~~-~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~-~s~~~~l~Pv~a~~~g~l  259 (296)
T PRK15430        205 MGQ-NPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLST-LGFFQYIGPTLMFLLAVT  259 (296)
T ss_pred             ccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence            111 1122334444433478899999999999999998 6554   5665 466765

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.90  E-value=1e-21  Score=178.62  Aligned_cols=235  Identities=12%  Similarity=0.062  Sum_probs=173.0

Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhh
Q 022504           29 EVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAM  108 (296)
Q Consensus        29 i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil  108 (296)
                      +..|.++++--+|..+.+.|+.++.+.+.+... ..++++++.+++|+++++..|++++.++.+.+.|++|++++.++++
T Consensus        19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li   97 (302)
T TIGR00817        19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTI   97 (302)
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            468999875467999999999999887665421 1222334567899999999999998888999999999999999999


Q ss_pred             cchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHHH
Q 022504          109 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL  188 (296)
Q Consensus       109 ~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~  188 (296)
                      .+++|+++.+++++++|||++++      +++|+.++++|+.+...  +                  +. .....|+++.
T Consensus        98 ~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~~--~------------------~~-~~~~~G~~~~  150 (302)
T TIGR00817        98 KAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALASD--T------------------EL-SFNWAGFLSA  150 (302)
T ss_pred             HhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhcC--C------------------cc-cccHHHHHHH
Confidence            99999999999999999998766      68999999999976431  1                  01 1235699999


Q ss_pred             HHHHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHHHHHHHHHhcCCC---cceec-cchhHHHHHHHHHhhhHH
Q 022504          189 AAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEPS---DWKLG-LDIGLVAVLYSLLALGFE  262 (296)
Q Consensus       189 l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~~~~~-~~~~~~~lly~gv~~t~~  262 (296)
                      ++++++|++|++..||..+  ++ |+..++.+++..+.+.+.|+....|+.+.   ++... +......+.+.+++.+..
T Consensus       151 l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (302)
T TIGR00817       151 MISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMG  229 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHH
Confidence            9999999999999999887  66 47889999999999999998776653211   11000 000011122223333333


Q ss_pred             HHH----HHHHHHhcCCceeeecc---cccHHH-HHHhh
Q 022504          263 LAC----AHGACRELDLFMYQCSS---PWPLSS-LLSWM  293 (296)
Q Consensus       263 ay~----l~~~~l~~~g~~~~~s~---~~p~~~-l~~~~  293 (296)
                      ++.    ++++++|+.||++ ++.   ++|+.+ +++|+
T Consensus       230 ~~~~~~~~~~~~l~~~sa~t-~sv~~~l~pv~~~~~~~~  267 (302)
T TIGR00817       230 FFHFYQQVAFMLLGRVSPLT-HSVGNCMKRVVVIVVSIL  267 (302)
T ss_pred             HHHHHHHHHHHHHccCCchH-HHHHhhhhhhheeeeehh
Confidence            444    5558999999998 555   456665 55654

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.88  E-value=8.2e-21  Score=171.00  Aligned_cols=246  Identities=9%  Similarity=-0.102  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 022504           14 SVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFH-RSERPQLTFSILCSFFLLSVFG-CSSQI   91 (296)
Q Consensus        14 ~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~-r~~~~~~~~~~~~~~~~~g~~g-~~~~~   91 (296)
                      .+..+.++++|+...+.+|...++ -++  ..++++..+++++.|+...+. ++.+++.+++ +......+.++ ..++.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPAT-FWLLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchh-hHHHHHHHHHHHHHHHH
Confidence            456778999999999999965443 344  347777777777777665432 2222323333 34444555555 89999


Q ss_pred             HHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCC
Q 022504           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (296)
Q Consensus        92 ~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~  171 (296)
                      +++.|++++++++++.+.++.|+++.+++++++|||++++      +++|+.+++.|++++... +.             
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~-~~-------------  138 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLS-RF-------------  138 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhcc-cc-------------
Confidence            9999999999999999999999999999999999998766      599999999999887621 10             


Q ss_pred             cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcch---hHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchh
Q 022504          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA---VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIG  248 (296)
Q Consensus       172 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~---~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~  248 (296)
                         .   .....|+.+.++++++|+.|++..|+..++.++   ....+.+++..+++++.+.....++..  +. ..+..
T Consensus       139 ---~---~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~  209 (281)
T TIGR03340       139 ---A---QHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS--MF-PYARQ  209 (281)
T ss_pred             ---c---ccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccc--hh-hhHHH
Confidence               0   112358889999999999999998876554431   112334444443333333222212211  11 11224


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCCceeeeccc---ccHH-HHHHhh
Q 022504          249 LVAVLYSLLALGFELACAHGACRELDLFMYQCSSP---WPLS-SLLSWM  293 (296)
Q Consensus       249 ~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~---~p~~-~l~~~~  293 (296)
                      ++.++|.+.++++++|.+|++++|+.++++ ++.+   +|+. .+++|.
T Consensus       210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~-~~~~~~l~pv~a~l~g~~  257 (281)
T TIGR03340       210 ILPSATLGGLMIGGAYALVLWAMTRLPVAT-VVALRNTSIVFAVVLGIW  257 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCceE-EEeecccHHHHHHHHHHH
Confidence            567889999999999999999999999988 5544   4555 466664

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.87  E-value=6.8e-20  Score=169.92  Aligned_cols=238  Identities=13%  Similarity=0.092  Sum_probs=174.9

Q ss_pred             HHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 022504           25 VSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRSERPQL--TFSILCSFFLLSVFGCSSQIFSFVGIQYSS  101 (296)
Q Consensus        25 g~~~i~~K~~~~~~~~-p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~--~~~~~~~~~~~g~~g~~~~~~~~~gl~~ts  101 (296)
                      ...-...|.+++. +| |+.+..+|+.++.++...+.. .+.+++|+.  .+++++.++.+|+++...+...+.|+++++
T Consensus        62 ~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~s  139 (350)
T PTZ00343         62 VLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWA-TGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGA  139 (350)
T ss_pred             HHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3445568999874 99 999999999999887655432 222223333  345788999999999434555779999999


Q ss_pred             chhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCch
Q 022504          102 PTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSW  181 (296)
Q Consensus       102 a~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  181 (296)
                      ++.++++.++.|+++++++++++|||.+++      +++|+++.+.|+.+.+.  + +                 . ...
T Consensus       140 vs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~-~-----------------~-~~~  192 (350)
T PTZ00343        140 VSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--K-E-----------------L-HFT  192 (350)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--c-c-----------------c-hhH
Confidence            999999999999999999999999998766      69999999999988752  1 0                 0 113


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHhcCC--Ccce----eccchhH
Q 022504          182 ILGGFFLAAEAFMNSAWFILQALILRKFA------AVLIIMFYLFFFNTILSTAFALIVVSEP--SDWK----LGLDIGL  249 (296)
Q Consensus       182 ~~G~ll~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~g~i~~~~~~~~~~~~~--~~~~----~~~~~~~  249 (296)
                      ..|++++++++++|++|++..||..++.+      ++.....++..+|.+.++|+....|...  ..+.    ......+
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            57999999999999999999999877542      2444566668899999999877665421  1110    0011123


Q ss_pred             HHHHHHHHhhhHHHHHHHHH----HHhcCCceeeeccc---ccHH-HHHHhh
Q 022504          250 VAVLYSLLALGFELACAHGA----CRELDLFMYQCSSP---WPLS-SLLSWM  293 (296)
Q Consensus       250 ~~lly~gv~~t~~ay~l~~~----~l~~~g~~~~~s~~---~p~~-~l~~~~  293 (296)
                      ..++|. ++.++++|.+|+.    ++++++|.. .++.   .|+. .+++|+
T Consensus       273 ~~~l~~-i~~s~l~~~l~n~~~f~~l~~~s~~t-~sv~~~lk~V~~iv~s~l  322 (350)
T PTZ00343        273 GIIIFK-IFFSGVWYYLYNEVAFYCLGKVNQVT-HAVANTLKRVVIIVSSII  322 (350)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHhccchhH-HHHHHHHHHHHHhhhhHH
Confidence            456665 5578999999995    999999987 5554   4554 355654

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.82  E-value=6.1e-18  Score=151.43  Aligned_cols=251  Identities=15%  Similarity=0.165  Sum_probs=178.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 022504            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C   87 (296)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~   87 (296)
                      +........+...+.|+.+....|...++..++....+.|+..+.+++.+.... ++....+ ..++++.....+.++ .
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~   81 (292)
T COG0697           4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-EPRGLRP-ALRPWLLLLLLALLGLA   81 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-hcccccc-cccchHHHHHHHHHHHH
Confidence            345567778888899999999999987644677777788999999884443221 1111111 112234566666667 8


Q ss_pred             HHHHHHHHHhhccCchhhhhhcchhhHHHHHHHH-HHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCC
Q 022504           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (296)
Q Consensus        88 ~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~-~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~  166 (296)
                      .++.+++.++++++++.++.+.++.|+++.+++. ++++||++++      ++.|+.+++.|++++....+.        
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~--------  147 (292)
T COG0697          82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG--------  147 (292)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc--------
Confidence            9999999999999999999999999999999996 6679998766      689999999999988632110        


Q ss_pred             CCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceecc
Q 022504          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWKLGL  245 (296)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~  245 (296)
                               .... ...|+.+.+.++++|+++.+..|+.. +.+ +..... ++.........+  ...... . .+. .
T Consensus       148 ---------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~-~-~~~-~  210 (292)
T COG0697         148 ---------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RLG-PVTLALLLQLLLALLLLLL--FFLSGF-G-API-L  210 (292)
T ss_pred             ---------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHH--HHhccc-c-ccC-C
Confidence                     0001 46899999999999999999999887 543 444444 554422222222  111111 1 111 1


Q ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeec---ccccHHHHH-Hhh
Q 022504          246 DIGLVAVLYSLLALGFELACAHGACRELDLFMYQCS---SPWPLSSLL-SWM  293 (296)
Q Consensus       246 ~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s---~~~p~~~l~-~~~  293 (296)
                      ...+..+.+.|+++++++|.+|++++++.++.. ++   ..+|+.+++ +|.
T Consensus       211 ~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~l  261 (292)
T COG0697         211 SRAWLLLLYLGVFSTGLAYLLWYYALRLLGASL-VALLSLLEPVFAALLGVL  261 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHHHHH
Confidence            134778899999999999999999999999988 55   467877655 664

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.76  E-value=3.6e-16  Score=142.72  Aligned_cols=240  Identities=16%  Similarity=0.166  Sum_probs=170.0

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022504           19 IVLLAQVSNMEVIKAAMSKGIN-KYVIIVYSDALSSLFFLFCSFLFHRS-ERPQLTFSILCSFFLLSVFGCSSQIFSFVG   96 (296)
Q Consensus        19 ~~~~~wg~~~i~~K~~~~~~~~-p~~~~~~R~~~A~l~l~~~~~~~~r~-~~~~~~~~~~~~~~~~g~~g~~~~~~~~~g   96 (296)
                      ..+++-.++.+.++..-+.+.+ |..-.+.-+..-.++..+....++++ +..+..+++++..+++|++....+.+...|
T Consensus        20 ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a   99 (334)
T PF06027_consen   20 VLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLA   99 (334)
T ss_pred             HHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777777776665554 55555555544444444544333222 122223456777788899888888999999


Q ss_pred             hhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCC
Q 022504           97 IQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLS  176 (296)
Q Consensus        97 l~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~  176 (296)
                      ++||+.+.+.++.++.-.++++++++++|||.++.      +++|+.++++|+.+++..+....    +        ++.
T Consensus       100 ~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~----~--------~~~  161 (334)
T PF06027_consen  100 YQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG----S--------DSS  161 (334)
T ss_pred             hhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc----c--------cCC
Confidence            99999999999999999999999999999998766      69999999999998875432110    0        122


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHHH
Q 022504          177 PQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSL  256 (296)
Q Consensus       177 ~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~g  256 (296)
                      ++++...||++++.+|..||++++++|+..|+.+ ......+.-++|.+...+...++|.+... +..|+..........
T Consensus       162 ~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~-~~~w~~~~~~~~v~~  239 (334)
T PF06027_consen  162 SGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIE-SIHWTSQVIGLLVGY  239 (334)
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhh-ccCCChhhHHHHHHH
Confidence            3456789999999999999999999999999985 66677777788888888877777754211 112222222222222


Q ss_pred             HhhhHHHHHHHHHHHhcCCcee
Q 022504          257 LALGFELACAHGACRELDLFMY  278 (296)
Q Consensus       257 v~~t~~ay~l~~~~l~~~g~~~  278 (296)
                      .++...-|.+....++..+|+.
T Consensus       240 ~~~lf~~y~l~p~~l~~ssAt~  261 (334)
T PF06027_consen  240 ALCLFLFYSLVPIVLRMSSATF  261 (334)
T ss_pred             HHHHHHHHHHHHHHHHhCccce
Confidence            3356777888899999988886

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.64  E-value=2.7e-14  Score=129.24  Aligned_cols=248  Identities=13%  Similarity=-0.004  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022504           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (296)
Q Consensus        13 ~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~   92 (296)
                      +++..++++++||.+++..|...  +.++.++.  |..++.+++..+....++.+  +.+++.+..-++.|..-...+.+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~w~ig~~~   75 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAFWALGQIN   75 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHHHHhhhhh
Confidence            36778899999999999999863  68888886  88888887776654432211  11123233333333333667899


Q ss_pred             HHHHhhccCchhhhhhcc-hhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCC
Q 022504           93 SFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (296)
Q Consensus        93 ~~~gl~~tsa~~asil~~-~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~  171 (296)
                      ++.++++++.+.+-.+.+ ++|++..+.+.+++|||.+.+++  ...++|+++.++|++++...++++.           
T Consensus        76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~--~~~~~g~~l~l~G~~l~~~~~~~~~-----------  142 (290)
T TIGR00776        76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQT--LLGLLALILIIIGVYLTSRSKDKSA-----------  142 (290)
T ss_pred             HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHH--HHHHHHHHHHHHhHheEEecccccc-----------
Confidence            999999999999988877 88899999999999999765420  1128999999999988753221100           


Q ss_pred             cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHH---HHHHHHHHHHHHHhcCCCcceeccchh
Q 022504          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFF---FNTILSTAFALIVVSEPSDWKLGLDIG  248 (296)
Q Consensus       172 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~  248 (296)
                        ..++..+..+|.++.++++++|+.|.+..|+.  ++ +|...++.|..   .+++...+..  ...+  ++.  ++..
T Consensus       143 --~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~~~--~~~~  211 (290)
T TIGR00776       143 --GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--ILAK--PLK--KYAI  211 (290)
T ss_pred             --ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH--hccc--chH--HHHH
Confidence              00000223579999999999999999998865  35 46777444443   3444333221  1111  121  1223


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHh-cCCceee--ecccccHHH-HHHh
Q 022504          249 LVAVLYSLLALGFELACAHGACRE-LDLFMYQ--CSSPWPLSS-LLSW  292 (296)
Q Consensus       249 ~~~lly~gv~~t~~ay~l~~~~l~-~~g~~~~--~s~~~p~~~-l~~~  292 (296)
                      +..++ .|++ ++++|.+|..+.+ +.+++..  .+..+|+.+ ++++
T Consensus       212 ~~~~~-~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v  257 (290)
T TIGR00776       212 LLNIL-PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGI  257 (290)
T ss_pred             HHHHH-HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHH
Confidence            44555 8887 8999999999999 8888762  345678875 4544

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.58  E-value=8.6e-15  Score=114.77  Aligned_cols=124  Identities=18%  Similarity=0.334  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Q 022504           22 LAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYS  100 (296)
Q Consensus        22 ~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~~~~~~~~gl~~t  100 (296)
                      ++||...+..|...++ +||....++|+..+++ ++++....+++..++.+++++......|.++ ...+.+++.+++++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            4699999999999874 9999999999999998 6666555544433456677888888999997 89999999999999


Q ss_pred             CchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504          101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus       101 sa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      +++.++.+.++.|+++.++++++++||++++      +++|+.+.+.|++++.
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998766      6999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.55  E-value=1.6e-12  Score=111.70  Aligned_cols=242  Identities=11%  Similarity=-0.026  Sum_probs=180.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 022504           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQI   91 (296)
Q Consensus        12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~   91 (296)
                      .+++.+..+++.-=+.--++|..... +.|...+.+|..+++++++.+..-    .+.+.++++++.+...|..-...+.
T Consensus        12 ~p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~RP----wr~r~~~~~~~~~~~yGvsLg~MNl   86 (292)
T COG5006          12 LPILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALFRP----WRRRLSKPQRLALLAYGVSLGGMNL   86 (292)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHhhH----HHhccChhhhHHHHHHHHHHHHHHH
Confidence            36788888888777778889998875 999999999999999998876322    1223567888899999987778888


Q ss_pred             HHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCC
Q 022504           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (296)
Q Consensus        92 ~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~  171 (296)
                      ++|.+++..+-+.+..+.++-|+.+..++.    +|        .+..+-+.+++.|+.++.- .++             
T Consensus        87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--------~~d~vwvaLAvlGi~lL~p-~~~-------------  140 (292)
T COG5006          87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS----RR--------LRDFVWVALAVLGIWLLLP-LGQ-------------  140 (292)
T ss_pred             HHHHHHHhccchhhhhhhhccHHHHHHHhc----cc--------hhhHHHHHHHHHHHHhhee-ccC-------------
Confidence            999999999999999999999998776552    11        1246677788899887752 121             


Q ss_pred             cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHH
Q 022504          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVA  251 (296)
Q Consensus       172 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (296)
                          +.+..+..|..+.+.++.||+.|++..||..+..+ ...-+...+.++++..+|+...... + ... .+ .....
T Consensus       141 ----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag-~-~l~-~p-~ll~l  211 (292)
T COG5006         141 ----SVWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG-P-ALF-SP-SLLPL  211 (292)
T ss_pred             ----CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc-h-hhc-Ch-HHHHH
Confidence                12234578999999999999999999999876554 3455688889999999998763221 1 111 11 12344


Q ss_pred             HHHHHHhhhHHHHHHHHHHHhcCCceee--ecccccHH-HHHHhh
Q 022504          252 VLYSLLALGFELACAHGACRELDLFMYQ--CSSPWPLS-SLLSWM  293 (296)
Q Consensus       252 lly~gv~~t~~ay~l~~~~l~~~g~~~~--~s~~~p~~-~l~~~~  293 (296)
                      -+-.++++|.+.|.+-..+++|.++...  .-++||.. ++-+|.
T Consensus       212 aLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i  256 (292)
T COG5006         212 ALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLI  256 (292)
T ss_pred             HHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHH
Confidence            5678899999999999999999887652  22366776 466664

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.53  E-value=3.9e-12  Score=111.74  Aligned_cols=232  Identities=12%  Similarity=0.029  Sum_probs=167.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC--C-CCCHHHHHHHHHHHHHH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSER--P-QLTFSILCSFFLLSVFG   86 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~--~-~~~~~~~~~~~~~g~~g   86 (296)
                      ..|+++..+.+.++||..+...|.. + ..|+.++...|.+-+.+++..+....++.+.  . ..++|.+..+...+..-
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            3579999999999999999999986 4 5999999999999999988876554433221  1 12345556666666655


Q ss_pred             HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCC
Q 022504           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSH  166 (296)
Q Consensus        87 ~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~  166 (296)
                      ..+...+.++.+.-..-++|.=.+..|++.++++.+++|||+++-      |++++.++.+|+.......|.        
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~--------  148 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS--------  148 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC--------
Confidence            889999999999999999999999999999999999999998655      699999999999887743221        


Q ss_pred             CCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccc
Q 022504          167 SGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLD  246 (296)
Q Consensus       167 ~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~  246 (296)
                                  ..+     ..+.=|++|++|..+-|+. +- + +.+-.+.-++.-..+.+.+....+++++-.....+
T Consensus       149 ------------lpw-----val~la~sf~~Ygl~RK~~-~v-~-a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~  208 (293)
T COG2962         149 ------------LPW-----VALALALSFGLYGLLRKKL-KV-D-ALTGLTLETLLLLPVALIYLLFLADSGQFLQQNAN  208 (293)
T ss_pred             ------------CcH-----HHHHHHHHHHHHHHHHHhc-CC-c-hHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCc
Confidence                        122     3456689999999874333 22 2 23333444444445555555544443320111222


Q ss_pred             hhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 022504          247 IGLVAVLYSLLALGFELACAHGACRELDLFMY  278 (296)
Q Consensus       247 ~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~  278 (296)
                      ..+.-++..|+ .|+++-.++..+-|++.-+.
T Consensus       209 ~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~  239 (293)
T COG2962         209 SLWLLLVLAGL-VTAVPLLLFAAAAKRLPLST  239 (293)
T ss_pred             hHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHH
Confidence            33566677887 69999999999999976554

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.50  E-value=3.4e-13  Score=104.15  Aligned_cols=134  Identities=13%  Similarity=0.151  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHHHHHHHH
Q 022504           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-QLTFSILCSFFLLSVFGCSSQI   91 (296)
Q Consensus        13 ~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~-~~~~~~~~~~~~~g~~g~~~~~   91 (296)
                      ..++.++++++||...++.|+.++ ++||-.-.+.|-....+++..+....++.+.+ ..+.|.+..+.+-|+.+.....
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            567889999999999999999987 69999999999999999988887765443322 3567778888888877789999


Q ss_pred             HHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           92 FSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        92 ~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      +||.++|..+++...-+-.+.|++++++++++++||++.+      +++|+.+..+|++++.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999877      5899999999998764

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.38  E-value=4e-10  Score=102.63  Aligned_cols=247  Identities=15%  Similarity=0.096  Sum_probs=168.8

Q ss_pred             HHHHHHHHHHh-CCCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 022504           26 SNMEVIKAAMS-KGIN--KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSP  102 (296)
Q Consensus        26 ~~~i~~K~~~~-~~~~--p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa  102 (296)
                      .+.+.-+.... .+..  |..+.+..+....++-.+.....++++.++.+   ++.....+++..+...+.+.+++|.|.
T Consensus        14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~al~~i~~   90 (303)
T PF08449_consen   14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIP---LKKYAILSFLFFLASVLSNAALKYISY   90 (303)
T ss_pred             HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCcCh---HHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            34455555444 2344  88999999999888766654433212222223   446677788788888999999999999


Q ss_pred             hhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchh
Q 022504          103 TLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWI  182 (296)
Q Consensus       103 ~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  182 (296)
                      ..-.++-+..|+.+++++.+++|+|.+++      |++++++..+|+++....+......           .+....+..
T Consensus        91 p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~-----------~~~~~~~~~  153 (303)
T PF08449_consen   91 PTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS-----------SNSSSFSSA  153 (303)
T ss_pred             HHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc-----------cccccccch
Confidence            99999999999999999999999987655      6999999999998877543211100           011112223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHH--HhcCCCcce--eccchhHHHHHHHHH
Q 022504          183 LGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALI--VVSEPSDWK--LGLDIGLVAVLYSLL  257 (296)
Q Consensus       183 ~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~--~~~~~~~~~--~~~~~~~~~lly~gv  257 (296)
                      .|+++.+.+.++.+...+.+||..++++ ++....++...++.+...+....  .++....+.  ...+..+..++...+
T Consensus       154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~  233 (303)
T PF08449_consen  154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL  233 (303)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence            4999999999999999999999988875 45678888999998888877766  222111111  111123344444444


Q ss_pred             hhhHHHHHHHHHHHhcCCceeeecccccHHHHHHhhh
Q 022504          258 ALGFELACAHGACRELDLFMYQCSSPWPLSSLLSWMS  294 (296)
Q Consensus       258 ~~t~~ay~l~~~~l~~~g~~~~~s~~~p~~~l~~~~~  294 (296)
                       ...++....++.+++.||.. .+....+.-.++++.
T Consensus       234 -~~~~g~~~i~~~~~~~~al~-~t~v~t~Rk~~sill  268 (303)
T PF08449_consen  234 -TGALGQFFIFYLIKKFSALT-TTIVTTLRKFLSILL  268 (303)
T ss_pred             -HHHHHHHHHHHHHHhcCchh-hhhHHHHHHHHHHHH
Confidence             45666667778899999987 666665554444443

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.36  E-value=1.4e-11  Score=111.35  Aligned_cols=192  Identities=18%  Similarity=0.187  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCC
Q 022504           79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  158 (296)
Q Consensus        79 ~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~  158 (296)
                      .+....+-...+.++..++++|+++..+++.++.-+||..++.++..||+++.      |.+++.+++.|+++++..+..
T Consensus       162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~  235 (416)
T KOG2765|consen  162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK  235 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc
Confidence            33444444778889999999999999999999999999999999999999876      799999999999998854321


Q ss_pred             CCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHHHHHHHHh
Q 022504          159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAV---LIIMFYLFFFNTILSTAFALIVV  235 (296)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~---~~~~~~~~~~g~i~~~~~~~~~~  235 (296)
                      ..    +         +........|+++++++|+.||.|+++.||...+.++.   ..+..+.-++..+++-|...+..
T Consensus       236 ~~----~---------~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~  302 (416)
T KOG2765|consen  236 QN----S---------DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILD  302 (416)
T ss_pred             cc----c---------cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            10    0         12224467999999999999999999999976665211   11122222233333333333322


Q ss_pred             cC-CCcceeccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceee---ecccccHHHH
Q 022504          236 SE-PSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQ---CSSPWPLSSL  289 (296)
Q Consensus       236 ~~-~~~~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~---~s~~~p~~~l  289 (296)
                      .. ...+..+.+.+...+++.+.++|+++-++|.+++--.+|...   .+.-.|+..+
T Consensus       303 ~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~  360 (416)
T KOG2765|consen  303 FFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMF  360 (416)
T ss_pred             HhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHH
Confidence            11 112333333455677888999999999999999999888652   2334577643

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.34  E-value=6.6e-13  Score=114.75  Aligned_cols=241  Identities=15%  Similarity=0.126  Sum_probs=155.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHH
Q 022504           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGCSSQ   90 (296)
Q Consensus        12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~~g~~g~~~~   90 (296)
                      ++.+++.++ ..+.++.++.|..+  +.||.+....|++.-.++-.|+..+.+..- .|+-.|   +++++.|+.|....
T Consensus        38 ~gl~l~~vs-~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R---~~LiLRg~mG~tgv  111 (346)
T KOG4510|consen   38 LGLLLLTVS-YFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKR---KWLILRGFMGFTGV  111 (346)
T ss_pred             cCceehhhH-HHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcE---EEEEeehhhhhhHH
Confidence            445555555 55655555555554  379999999998777777666654432211 122222   36778899996667


Q ss_pred             HHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCC
Q 022504           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSP  170 (296)
Q Consensus        91 ~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~  170 (296)
                      ...|++++|.+-++|+++..+.|++|.++++.++|||.+      ..+.+|..+.+.|+++++-.  |...+..+     
T Consensus       112 mlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t------~~eaL~s~itl~GVVLIvRP--pFlFG~~t-----  178 (346)
T KOG4510|consen  112 MLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFT------KFEALGSLITLLGVVLIVRP--PFLFGDTT-----  178 (346)
T ss_pred             HHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCc------HHHHHHHHHhhheEEEEecC--CcccCCCc-----
Confidence            788899999999999999999999999999999999965      45799999999999998721  11111100     


Q ss_pred             CcccCCCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceecc-chh
Q 022504          171 RRLLLSPQ-LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGL-DIG  248 (296)
Q Consensus       171 ~~~~~~~~-~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-~~~  248 (296)
                       ++.++++ +....|....+.+++.-|--.++.|++.|+.+.-.++ .+..+++.+...+.....+    .|+.+. ..+
T Consensus       179 -~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h~~msv-syf~~i~lV~s~I~~~~ig----~~~lP~cgkd  252 (346)
T KOG4510|consen  179 -EGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAHAIMSV-SYFSLITLVVSLIGCASIG----AVQLPHCGKD  252 (346)
T ss_pred             -cccccccccccCCchHHHHHhHhhhhhHHHHHHHhhccccEEEEe-hHHHHHHHHHHHHHHhhcc----ceecCccccc
Confidence             0012222 3456788889999988888888888887876422222 3333445444444332222    122111 013


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhc--CCcee
Q 022504          249 LVAVLYSLLALGFELACAHGACREL--DLFMY  278 (296)
Q Consensus       249 ~~~lly~gv~~t~~ay~l~~~~l~~--~g~~~  278 (296)
                      |+-++.+|++ ..+..++-..++++  .||..
T Consensus       253 r~l~~~lGvf-gfigQIllTm~lQiErAGpva  283 (346)
T KOG4510|consen  253 RWLFVNLGVF-GFIGQILLTMGLQIERAGPVA  283 (346)
T ss_pred             eEEEEEehhh-hhHHHHHHHHHhhhhccCCee
Confidence            5556677874 56777777776654  55554

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.30  E-value=9.1e-11  Score=103.99  Aligned_cols=132  Identities=12%  Similarity=0.111  Sum_probs=111.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 022504            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINK--YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (296)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p--~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g   86 (296)
                      .+.++....++++++|+...+..|...+ +.||  ..+..+|+.++.+++.++....+++  +..+.+++...+..+.++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGPN--PQALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcchHHHHHHHHHHHHH
Confidence            4567999999999999999999999875 4664  4555578999999988876653322  233667777788899988


Q ss_pred             -HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhh
Q 022504           87 -CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA  149 (296)
Q Consensus        87 -~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~  149 (296)
                       ...+.++++++++.++++++.+.++.|+++.++++++++||++.+      +++|..+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence             889999999999999999999999999999999999999998766      589999998886

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.21  E-value=3.5e-11  Score=93.63  Aligned_cols=102  Identities=22%  Similarity=0.357  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHH
Q 022504           46 VYSDALSSLFFLFCSFLFHRSER--PQLTFSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII  122 (296)
Q Consensus        46 ~~R~~~A~l~l~~~~~~~~r~~~--~~~~~~~~~~~~~~g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~  122 (296)
                      .+|+..+.+++..+...++|.++  +..+++++.+....|.++ ..++.++++|+++++ +.++.+.++.|+++.+++.+
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            68999999998888766433211  123345566777788888 699999999999999 58889999999999999999


Q ss_pred             HhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504          123 FRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (296)
Q Consensus       123 ~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~  154 (296)
                      ++|||++++      +++|+.++++|++++..
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            999998776      58999999999999874

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.00  E-value=1.2e-08  Score=92.43  Aligned_cols=136  Identities=15%  Similarity=0.022  Sum_probs=112.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~   88 (296)
                      +.++.+..+.++++|+...+..|..- . -++.....+++.++++.+.++....+.......+.+++..++..|+++ ..
T Consensus       148 ~~~G~l~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~  225 (292)
T PRK11272        148 NPWGAILILIASASWAFGSVWSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII  225 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence            45688999999999999999999853 2 345667788999998888877654322111123567788888899988 88


Q ss_pred             HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        89 ~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      .+.++++++++.++++++.+.++.|++..++++++++|+++..      +++|..+.+.|++++.
T Consensus       226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999998766      5999999999998875

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.96  E-value=2.3e-08  Score=90.60  Aligned_cols=136  Identities=14%  Similarity=0.059  Sum_probs=109.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~   88 (296)
                      +..+.+..+.+++.|+...+..|...+ +.+|....... .++++++.++......  ....++..+...+.+|+++ ..
T Consensus       146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~  221 (293)
T PRK10532        146 DLTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIGS-LIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL  221 (293)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHH-HHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence            356889999999999999999999754 57888775544 5566666666554322  1223455555667889988 88


Q ss_pred             HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhc
Q 022504           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (296)
Q Consensus        89 ~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~  155 (296)
                      .+.++++++++.++++++.+.+++|++..++++++++|+++..      +++|..+.+.|++.....
T Consensus       222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999998766      599999999999887643

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.90  E-value=2.4e-07  Score=81.74  Aligned_cols=193  Identities=13%  Similarity=0.124  Sum_probs=127.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhh
Q 022504           72 TFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (296)
Q Consensus        72 ~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~l  151 (296)
                      ++||...+.+=+++....+.+.+.++++.+|+.-.++.++-.++|.+++.+++|+|++.+      ||+++.+...|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence            456777777777777888899999999999999999999999999999999999998776      58999999999988


Q ss_pred             hhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHH
Q 022504          152 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAV-LIIMFYLFFFNTILSTAF  230 (296)
Q Consensus       152 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~i~~~~~  230 (296)
                      +...+....... +..+.+   .+....+...|.++.+.++++-++..+..+|..|+.+.+ ...+..-...|.+..++.
T Consensus        87 v~~~~~~~~~~~-~~~~~~---~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~  162 (244)
T PF04142_consen   87 VQLSSSQSSDNS-SSSSVH---HDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLA  162 (244)
T ss_pred             eecCCccccccc-cccccc---cccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            753322110000 000000   011123457899999999999999999999999986433 344555555666655554


Q ss_pred             HHHHhcCC-C--cceeccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 022504          231 ALIVVSEP-S--DWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMY  278 (296)
Q Consensus       231 ~~~~~~~~-~--~~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~  278 (296)
                      ....+.+. .  +.-..++    ...+..++...++=.+-...+|+.+...
T Consensus       163 ~~~~~~~~~~~~g~f~G~~----~~~~~~i~~~a~gGllva~v~KyadnI~  209 (244)
T PF04142_consen  163 LLLSDGSAISESGFFHGYS----WWVWIVIFLQAIGGLLVAFVLKYADNIV  209 (244)
T ss_pred             HhcccccccccCCchhhcc----hHHHHHHHHHHHhhHHHHHHHHHHhHHH
Confidence            33322221 1  1111111    1223334445555556666777766543

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.84  E-value=7.8e-08  Score=87.24  Aligned_cols=132  Identities=16%  Similarity=0.117  Sum_probs=101.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022504           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ   90 (296)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~   90 (296)
                      ..+.++++.++++|+...+..|...+ +.||.....   ..+.+.+.+.... ........+.+.+..++..|+.....+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~t~~~~  229 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFL-SPQPAMVFSLPAIIKLLLAAAAMGFGY  229 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHH-hcCccccCCHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999754 578876532   3334444433322 221112345666777776665337889


Q ss_pred             HHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        91 ~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      .++++++++.++++++.+.++.|++..++++++++|+++..      +++|.++.+.|+++..
T Consensus       230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~  286 (295)
T PRK11689        230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW  286 (295)
T ss_pred             HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence            99999999999999999999999999999999999998776      5999999999997764

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.77  E-value=2.4e-07  Score=86.19  Aligned_cols=137  Identities=11%  Similarity=0.124  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhcCCC----CCCCHHHHHHHHHHHHHH
Q 022504           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINK-YVIIVYSDALSSLFFLFCSFLFHRSER----PQLTFSILCSFFLLSVFG   86 (296)
Q Consensus        12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p-~~~~~~R~~~A~l~l~~~~~~~~r~~~----~~~~~~~~~~~~~~g~~g   86 (296)
                      .+.+.++.++++|+...+..|...+. ++| ....++...++++.+.+.....++...    ...+.. ...++..++..
T Consensus       189 lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t  266 (358)
T PLN00411        189 IGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIIT  266 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHH
Confidence            36788889999999999999987664 654 466777777777766655554333211    112222 22233344433


Q ss_pred             HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhcc
Q 022504           87 CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK  156 (296)
Q Consensus        87 ~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~  156 (296)
                      .+.+.++++++++.+|+.++++.++.|++++++++++++|++++.      +++|.++.+.|+++....+
T Consensus       267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence            567888999999999999999999999999999999999999877      5899999999998876543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.73  E-value=9.7e-08  Score=85.96  Aligned_cols=134  Identities=15%  Similarity=0.035  Sum_probs=92.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKY----VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVF   85 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~----~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~   85 (296)
                      +.++....+.++++|+...+..|...+ +.+|.    ....+.+.+.++.+.+....++++ ....+..........+.+
T Consensus       142 ~~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  219 (281)
T TIGR03340       142 RRKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPYARQILPSATLGGL  219 (281)
T ss_pred             chhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHH
Confidence            346777788899999999999997533 34443    223333333322222222211211 111122233444556666


Q ss_pred             H-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhh
Q 022504           86 G-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (296)
Q Consensus        86 g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~l  151 (296)
                      . ...+.++++++++.+++.++.+.++.|++..++++++++|+++.+      +++|..+.+.|+++
T Consensus       220 ~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       220 MIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence            6 788999999999999999999999999999999999999998766      59999999999865

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.71  E-value=7.1e-07  Score=81.08  Aligned_cols=137  Identities=15%  Similarity=0.136  Sum_probs=104.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCHHHHHHHHH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGIN---KYVIIVYSDALSSLFFLFCSFLFHRSE-----RPQLTFSILCSFFL   81 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~---p~~~~~~R~~~A~l~l~~~~~~~~r~~-----~~~~~~~~~~~~~~   81 (296)
                      +..+.++.+.++++|+...+..|...++ .+   ......+-..++.+.+.......+...     ....+.+++..++.
T Consensus       141 ~~~G~~l~l~aal~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  219 (299)
T PRK11453        141 AMLGFMLTLAAAFSWACGNIFNKKIMSH-STRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMY  219 (299)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHH
Confidence            3468899999999999999999986543 33   233334444444443333333222211     11345677888899


Q ss_pred             HHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           82 LSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        82 ~g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      +|+++ ...+.+++.++++.++++++.+.++.|++..++++++++|+++..      +++|..+.++|+.+..
T Consensus       220 l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        220 LAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            99999 889999999999999999999999999999999999999998776      5999999999998764

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.71  E-value=5.8e-07  Score=73.10  Aligned_cols=133  Identities=17%  Similarity=0.253  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCC-------CHHH
Q 022504           13 PSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER----PQL-------TFSI   75 (296)
Q Consensus        13 ~~l~l~~~~~~wg~~~i~~K~~~~~------~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~----~~~-------~~~~   75 (296)
                      |....+.+.++-+...+..|..+++      +.||.++..+-...+.+++++.....++.+.    ...       +.+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            3567888999999999999998876      6899999999999999999998877654331    001       1233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhh
Q 022504           76 LCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (296)
Q Consensus        76 ~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~l  151 (296)
                      +..++..|+++...+...+..++++||.+.++....-.+.+.+++.++++|+++.+      +++|+.+++.|.++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            45555566666888999999999999999999999999999999999999998766      59999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.70  E-value=1e-07  Score=86.70  Aligned_cols=138  Identities=17%  Similarity=0.134  Sum_probs=105.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---------CHHHHHH-
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL---------TFSILCS-   78 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~-~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~---------~~~~~~~-   78 (296)
                      +..+.+..+.+++.|+...+..|...++ ++||..+..+-..++.+.+.|+....+.......         +...... 
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            4568899999999999999999997652 5899999999999999999998765331110000         0001111 


Q ss_pred             HHHHHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           79 FFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        79 ~~~~g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      .+..+... ...+..++.++++++|.++++..+..|+++.++++++++|+++.+      +++|..+.+.|+.+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~  292 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYS  292 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHH
Confidence            22233322 344467778999999999999999999999999999999999877      5999999999998765

specificities overlap.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.68  E-value=1.3e-06  Score=79.32  Aligned_cols=220  Identities=14%  Similarity=0.097  Sum_probs=152.6

Q ss_pred             HHHHHHh--CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh
Q 022504           30 VIKAAMS--KGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTA  107 (296)
Q Consensus        30 ~~K~~~~--~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asi  107 (296)
                      ..|..++  +--.|..+...++..+.+..........++..+..++..+..++.+|+..+....+...++++.+.+..-.
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~  114 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQT  114 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHH
Confidence            3788887  33358888888888877776665444322222212334567788899988888999999999999999999


Q ss_pred             hcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHH
Q 022504          108 MLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFF  187 (296)
Q Consensus       108 l~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll  187 (296)
                      +=.++|.++.+++.++.+|+.+++.      +..++....|+.+-+..                    + .+-+..|.+.
T Consensus       115 iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~~--------------------e-~~fn~~G~i~  167 (316)
T KOG1441|consen  115 IKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASVT--------------------E-LSFNLFGFIS  167 (316)
T ss_pred             HHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeeec--------------------c-ccccHHHHHH
Confidence            9999999999999999999987664      56666777777654321                    1 1124689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHHHHHHHH-HHHHHHhcCCCc-ce-eccchhHHHHHHHHHhhh
Q 022504          188 LAAEAFMNSAWFILQALILRK----FAAVLIIMFYLFFFNTILST-AFALIVVSEPSD-WK-LGLDIGLVAVLYSLLALG  260 (296)
Q Consensus       188 ~l~aa~~~a~~~v~~k~~~~~----~~~~~~~~~~~~~~g~i~~~-~~~~~~~~~~~~-~~-~~~~~~~~~lly~gv~~t  260 (296)
                      ++++.+..+...+++|+..++    . ++..+..++.-++.+.++ |.....|+.... +. ..++......++.. ++.
T Consensus       168 a~~s~~~~al~~I~~~~ll~~~~~~~-~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-v~~  245 (316)
T KOG1441|consen  168 AMISNLAFALRNILSKKLLTSKGESL-NSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNS-VLA  245 (316)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccccc-CchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHH-HHH
Confidence            999999999999999998752    3 467788888888888888 766555443210 01 12222223333444 233


Q ss_pred             HHHHHHHHHHHhcCCcee
Q 022504          261 FELACAHGACRELDLFMY  278 (296)
Q Consensus       261 ~~ay~l~~~~l~~~g~~~  278 (296)
                      ..-....++.++|.+|..
T Consensus       246 f~~Nls~f~~ig~tSalT  263 (316)
T KOG1441|consen  246 FLLNLSAFLVIGRTSALT  263 (316)
T ss_pred             HHHHHHHHHHHcccCchh
Confidence            444456677888888754

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.67  E-value=8.6e-09  Score=88.97  Aligned_cols=232  Identities=18%  Similarity=0.158  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 022504           17 MVIVLLAQVSNMEVIKAAMSKGI-NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFV   95 (296)
Q Consensus        17 l~~~~~~wg~~~i~~K~~~~~~~-~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~   95 (296)
                      -+++.++=+.++.-+.++ +.++ .|..-.+.-+.+=+++..++..+++  +.-+..|   ...+++++...=.+.+...
T Consensus        24 QiLSL~~t~~a~tss~la-~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~--~~~~~~~---~hYilla~~DVEaNy~vV~   97 (336)
T KOG2766|consen   24 QILSLLITSTAFTSSELA-RKGINAPTSQTFLNYVLLALVYGPIMLFRR--KYIKAKW---RHYILLAFVDVEANYFVVK   97 (336)
T ss_pred             HHHHHHHHcchhhhHHHH-hccCCCccHHHHHHHHHHHHHHhhHHHhhh--HHHHHHH---HHhhheeEEeecccEEEee
Confidence            344444445555555544 3344 4777777888777777777765532  2112223   3467777777555666778


Q ss_pred             HhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccC
Q 022504           96 GIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLL  175 (296)
Q Consensus        96 gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~  175 (296)
                      +.|||+-+.+..+-+-.-..+.+++++++|.|-++.      |+.|+++|+.|++.+++.+-  ..+           ..
T Consensus        98 AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV--~ag-----------d~  158 (336)
T KOG2766|consen   98 AYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDV--HAG-----------DR  158 (336)
T ss_pred             ehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeee--ccc-----------cc
Confidence            999999999988866555566778999999987665      69999999999999885421  111           13


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHH
Q 022504          176 SPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYS  255 (296)
Q Consensus       176 ~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~  255 (296)
                      .++++..+||++++++|.+||..++..+...|+.| ...+....-++|++...+= ++++... .-+..|+.  --..|+
T Consensus       159 aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ-~i~~~~~-~~tl~w~~--~i~~yl  233 (336)
T KOG2766|consen  159 AGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQ-FIFERHH-VSTLHWDS--AIFLYL  233 (336)
T ss_pred             cCCCCCccCcEEEEecceeeeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHH-Hhhhccc-eeeEeehH--HHHHHH
Confidence            44567789999999999999999999999999985 5667777778888887765 4444431 11233332  223344


Q ss_pred             HH-hhhHHHHHHHHHHHhcCCcee
Q 022504          256 LL-ALGFELACAHGACRELDLFMY  278 (296)
Q Consensus       256 gv-~~t~~ay~l~~~~l~~~g~~~  278 (296)
                      +. ++...=|.+--..+|..|++.
T Consensus       234 ~f~L~MFllYsl~pil~k~~~aT~  257 (336)
T KOG2766|consen  234 RFALTMFLLYSLAPILIKTNSATM  257 (336)
T ss_pred             HHHHHHHHHHHhhHHheecCCceE
Confidence            43 233444556666777777665

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.59  E-value=7.7e-05  Score=67.87  Aligned_cols=203  Identities=11%  Similarity=0.127  Sum_probs=144.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHHHHHHHHhhcC---CC-CC------CCHHHHHH
Q 022504           12 LPSVGMVIVLLAQVSNMEVIKAAMSKG---INKYVIIVYSDALSSLFFLFCSFLFHRS---ER-PQ------LTFSILCS   78 (296)
Q Consensus        12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~---~~p~~~~~~R~~~A~l~l~~~~~~~~r~---~~-~~------~~~~~~~~   78 (296)
                      .-++.++...+.+++..+..|+.-..+   +.|...++.-.++-.++...+.+...|+   +. ..      .+++|...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            445667777899999999999976545   6788889888888888877766654322   11 11      13345455


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCC
Q 022504           79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGP  158 (296)
Q Consensus        79 ~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~  158 (296)
                      +.+=+++....+-+++.++.+.+|++..+..++--+-|.+++.+++++|++++      ||.++++..+|+.++-....+
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~  168 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLS  168 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCC
Confidence            55555556666679999999999999999999999999999999999998877      489999999999887522211


Q ss_pred             CCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHH
Q 022504          159 PLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAV-LIIMFYLFFFNTILSTAF  230 (296)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~g~i~~~~~  230 (296)
                      .         .++.+ .....+...|....+.++++-++..+..+|..|+-..+ ...+.--..+|.+..+..
T Consensus       169 ~---------~~a~~-~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~  231 (345)
T KOG2234|consen  169 P---------TGAKS-ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLT  231 (345)
T ss_pred             C---------CCccC-CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence            1         01100 12223567899999999999999999999999875433 233333334555544443

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.55  E-value=2.4e-06  Score=79.42  Aligned_cols=137  Identities=16%  Similarity=0.089  Sum_probs=101.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------CCCC
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSK------GINKYVIIVYSDALSSLFFLFCSFLFHRSER-----------PQLT   72 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~------~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~-----------~~~~   72 (296)
                      +..+.+..+++++.|+...+.+|..+++      +.++.....+-..+++++++|+....+....           ....
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            4568999999999999999999998763      2567777777788899888888664321100           0011


Q ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhh
Q 022504           73 FSILCSFFLLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (296)
Q Consensus        73 ~~~~~~~~~~g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~l  151 (296)
                      .......+..+.+. .+++...|++++++++.++++..++.|+++.++++++++|+++..      +++|..+.+.|+++
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l  345 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL  345 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence            11112222222222 455555667999999999999999999999999999999999877      59999999999976


Q ss_pred             h
Q 022504          152 V  152 (296)
Q Consensus       152 l  152 (296)
                      -
T Consensus       346 Y  346 (350)
T PTZ00343        346 Y  346 (350)
T ss_pred             H
Confidence            4

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.46  E-value=2.7e-06  Score=77.09  Aligned_cols=134  Identities=14%  Similarity=0.089  Sum_probs=99.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH---HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDA---LSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG   86 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~---~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g   86 (296)
                      ..|+....+++.+.++...+..|..   +.||.+..+....   +++.++.+..    ++.+|. +.+.....++.|++.
T Consensus       150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~Gi~~  221 (290)
T TIGR00776       150 FKKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH----ILAKPL-KKYAILLNILPGLMW  221 (290)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH----hcccch-HHHHHHHHHHHHHHH
Confidence            3689999999999999999999974   3899988555544   4444433321    111222 233344455577776


Q ss_pred             HHHHHHHHHHhh-ccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           87 CSSQIFSFVGIQ-YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        87 ~~~~~~~~~gl~-~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      ...+.+|+.+.+ +.+++.++++.+..|+...+.+.+++||+.++|++  +.-.+|.++.+.|+.++.
T Consensus       222 ~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~--~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       222 GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREM--IAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCccee--ehhHHHHHHHHHHHHHHh
Confidence            777888999999 99999999999999999999999999999877741  112289999999987764

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=0.00017  Score=64.83  Aligned_cols=252  Identities=15%  Similarity=0.108  Sum_probs=166.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhC-CCChHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 022504           12 LPSVGMVIVLLAQVSNMEVIKAAMSK-GINKYV-IIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS   89 (296)
Q Consensus        12 ~~~l~l~~~~~~wg~~~i~~K~~~~~-~~~p~~-~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~   89 (296)
                      ++....+.=.+.=-.+-++-|.++.. ++|... +..++.+...+.+...-.. +--+.+++++++.+..+...++-.++
T Consensus        12 ~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~~~   90 (314)
T KOG1444|consen   12 SPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFVGM   90 (314)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHHHH
Confidence            33443333333333455667888764 344332 2337777766665543211 11122567888899999999988888


Q ss_pred             HHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCC
Q 022504           90 QIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGS  169 (296)
Q Consensus        90 ~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~  169 (296)
                      ...-..+++|.+...-+++=+..|+++.+.-..+++.|.+      +.-+..+....+|.......+             
T Consensus        91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~------~~v~~Sv~~m~~~s~~~~~~d-------------  151 (314)
T KOG1444|consen   91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPS------NKVWASVFAMIIGSVAAAFTD-------------  151 (314)
T ss_pred             HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCch------hhHHHHHHHHHHHHHhhcccc-------------
Confidence            8888999999999999999999999999998888886654      445778888888876544210             


Q ss_pred             CCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHhcCC------Ccce
Q 022504          170 PRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEP------SDWK  242 (296)
Q Consensus       170 ~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~~------~~~~  242 (296)
                              ..-...|-.+.+.+.++-+.+.+..||..+... ..+.+..+..+....+......++++-.      +.|.
T Consensus       152 --------~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~  223 (314)
T KOG1444|consen  152 --------LSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS  223 (314)
T ss_pred             --------ceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc
Confidence                    011234899999999999999999988766532 2355778888888777777776665421      1121


Q ss_pred             eccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceee--ecccccHHHHHHhhh
Q 022504          243 LGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQ--CSSPWPLSSLLSWMS  294 (296)
Q Consensus       243 ~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~--~s~~~p~~~l~~~~~  294 (296)
                      .  ...+..+...++++-++.|..+ ++.+..+++..  +...+=+.+-++|+.
T Consensus       224 ~--~~~~~~~~lScv~gf~isy~s~-~ct~~~SAtT~tivG~~n~l~t~l~~ll  274 (314)
T KOG1444|consen  224 D--SSVLVVMLLSCVMGFGISYTSF-LCTRVNSATTTTIVGAKNKLLTYLGGLL  274 (314)
T ss_pred             c--hhHHHHHHHHHHHHHHHHHHHH-HHHhhccccceeehhhhhhHHHHHHHHh
Confidence            1  1236678888888877877764 56666677552  444444455555553

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.38  E-value=1.3e-05  Score=71.38  Aligned_cols=132  Identities=15%  Similarity=0.170  Sum_probs=102.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HH
Q 022504           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIV-YSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CS   88 (296)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~-~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~   88 (296)
                      ..+.+..+.+.+.|+...+..|...  ..++..... +.+..+.....+.. ...+.  .+.+.+++......|+++ ..
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~g~~~~~i  227 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFF-LSGFG--APILSRAWLLLLYLGVFSTGL  227 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHH-hcccc--ccCCHHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999765  477777777 44432222222221 11111  234567788888999999 67


Q ss_pred             HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        89 ~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      .+.+++.+++..+++.++.+.++.|++..++++++++|+++.+      +++|..+.+.|+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998766      5899999999987764

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.31  E-value=3.3e-06  Score=65.36  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=59.9

Q ss_pred             HHHHHH-HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        81 ~~g~~g-~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      ..++.+ ...+.++..++++.+.+.|-.+.++.|+++.++++++++||++++      |++|+.+.++|++++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            344466 778899999999999999999999999999999999999999877      5999999999998764

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.31  E-value=1.4e-05  Score=72.45  Aligned_cols=132  Identities=10%  Similarity=-0.007  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 022504           15 VGMVIVLLAQVSNMEVIKAAMSKG-INKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFS   93 (296)
Q Consensus        15 l~l~~~~~~wg~~~i~~K~~~~~~-~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~   93 (296)
                      ...+.++++|+.+.+..|...+++ .++.....+-..++.+.+.++... ........+...+......|+.+...+.++
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~  230 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADS-STSHMGQNPMSLNLLLIAAGIVTTVPLLCF  230 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccC-CcccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            346678899999999999863221 222333333333333332221100 000011112233334444555447889999


Q ss_pred             HHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           94 FVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        94 ~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      +.++++.+++.++.+.++.|++..++++++++|+++.+      +++|..+.+.|+.++.
T Consensus       231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~  284 (296)
T PRK15430        231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV  284 (296)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998776      5899999988887765

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.19  E-value=0.0002  Score=63.84  Aligned_cols=201  Identities=18%  Similarity=0.209  Sum_probs=124.3

Q ss_pred             hhhhHHHHHHHH--HHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcC-C--CCCCCHHHH-HHHHHH
Q 022504            9 RAALPSVGMVIV--LLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRS-E--RPQLTFSIL-CSFFLL   82 (296)
Q Consensus         9 ~~~~~~l~l~~~--~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~-~--~~~~~~~~~-~~~~~~   82 (296)
                      .+....+++++.  .+.-|..|...+.-.+. --|..++.+....=..+-.......+++ .  +...+|++. +++...
T Consensus        12 ~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f-~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPt   90 (349)
T KOG1443|consen   12 MNRVLTLALVLLYYFLSIGLTFYFKWLTKNF-HFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPT   90 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCc-CCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhh
Confidence            333444444433  23335567777665443 2366666666544333332222222211 1  224567764 457788


Q ss_pred             HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcC
Q 022504           83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG  162 (296)
Q Consensus        83 g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~  162 (296)
                      |+.+..-..+..++++|.+.+.-+..=+..++|+.+++.+++-||.++.      -..-+.+..+|+++++. +..    
T Consensus        91 alata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft~-KsT----  159 (349)
T KOG1443|consen   91 ALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTY-KST----  159 (349)
T ss_pred             hhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEe-ccc----
Confidence            8888888899999999999999999999999999999999999998764      12333444455555542 211    


Q ss_pred             CCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 022504          163 ELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA----AVLIIMFYLFFFNTILSTAFALIVVSE  237 (296)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~g~i~~~~~~~~~~~~  237 (296)
                                     +. ...|-++++.+.++-++-=.+.+++.++.|    .|+.......-.-.+.++|..+.+|+.
T Consensus       160 ---------------qf-~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~  222 (349)
T KOG1443|consen  160 ---------------QF-NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL  222 (349)
T ss_pred             ---------------ce-eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence                           11 356999999998888887777777777654    344443333334445566666667764

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.15  E-value=3.7e-06  Score=65.29  Aligned_cols=96  Identities=19%  Similarity=0.152  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHHHHhhhHHHHHHHHHHHh
Q 022504          193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRE  272 (296)
Q Consensus       193 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~  272 (296)
                      ++||.+.+..|+..++.| +...+++.+..+.+ +.+...+.+..+ .... ....+...++.+++++.+++.++++++|
T Consensus         1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP-FKNL-SPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc-ccCC-ChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            478999999999999984 78999999999988 666665554432 1111 2234677888999889999999999999


Q ss_pred             cCCceeeeccc---ccHH-HHHHhh
Q 022504          273 LDLFMYQCSSP---WPLS-SLLSWM  293 (296)
Q Consensus       273 ~~g~~~~~s~~---~p~~-~l~~~~  293 (296)
                      +.++.. ++.+   +|+. .+++|.
T Consensus        77 ~~~~~~-~~~~~~~~pv~~~i~~~~  100 (126)
T PF00892_consen   77 YISASI-VSILQYLSPVFAAILGWL  100 (126)
T ss_pred             hcchhH-HHHHHHHHHHHHHHHHHH
Confidence            999988 6554   4544 355554

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.92  E-value=0.00066  Score=59.99  Aligned_cols=188  Identities=15%  Similarity=0.134  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHh---CCCC----hHHHHHHHHHHHHHHHHHHHHHhhcCCC---------------CCCCHHHHHHHHHH
Q 022504           25 VSNMEVIKAAMS---KGIN----KYVIIVYSDALSSLFFLFCSFLFHRSER---------------PQLTFSILCSFFLL   82 (296)
Q Consensus        25 g~~~i~~K~~~~---~~~~----p~~~~~~R~~~A~l~l~~~~~~~~r~~~---------------~~~~~~~~~~~~~~   82 (296)
                      +.|-+.+|.+-+   .+-|    |+..+..-|+-=..++..+..++.|...               ++.+..   ..+.=
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~---lfl~P   92 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPV---LFLPP   92 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcc---eecCh
Confidence            456777888632   1222    5555555555544555555444433221               112221   22223


Q ss_pred             HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcC
Q 022504           83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG  162 (296)
Q Consensus        83 g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~  162 (296)
                      +++........+.|+.+|+++.--.+-...-+|+-+++..+++.++..+      ||+|+.....|++.+...+   ...
T Consensus        93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d---~~~  163 (372)
T KOG3912|consen   93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLD---VHL  163 (372)
T ss_pred             HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeee---ccc
Confidence            4444455667889999999988888878888999999999999988666      5899999999998875321   000


Q ss_pred             CCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHH
Q 022504          163 ELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFAL  232 (296)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~  232 (296)
                        +++  |    .+..++...||++.+++-+.-|+..+.-+|..++++ +|.....|+-++|.+.+...+.
T Consensus       164 --~~~--p----~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i  226 (372)
T KOG3912|consen  164 --VTD--P----YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAI  226 (372)
T ss_pred             --ccC--C----ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHH
Confidence              000  0    122345678999999999999999999999888864 5788899999998655544433

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.86  E-value=0.00035  Score=55.52  Aligned_cols=117  Identities=16%  Similarity=0.178  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-HHHH
Q 022504           12 LPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-CSSQ   90 (296)
Q Consensus        12 ~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~~~~   90 (296)
                      ++++.++.+.++=+...+.-|..+++ .+....... . ...+.      . .      .+.   ...+..|+.. .+.+
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~-~-~~~~~------~-~------~~p---~~~i~lgl~~~~la~   62 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWD-F-IAALL------A-F------GLA---LRAVLLGLAGYALSM   62 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhH-H-HHHHH------H-H------hcc---HHHHHHHHHHHHHHH
Confidence            36777888888888999999999864 443332221 1 10000      0 0      010   1256778888 8899


Q ss_pred             HHHHHHhhccCchhhhhhcchhhHHHHHHHHH--HhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        91 ~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~--~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      .++..++++.+.+.|.-+.+..|.++.+.++.  +++|+++++      |++|+.+.++|++++.
T Consensus        63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            99999999999999999999999888888874  799999877      5999999999998875

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.82  E-value=0.00041  Score=59.77  Aligned_cols=184  Identities=13%  Similarity=0.035  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccC
Q 022504           78 SFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKG  157 (296)
Q Consensus        78 ~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g  157 (296)
                      .....+.-..+.+.....++||.+=-+..+=-+.-|+-+++++.++.+++-+|+      |..+++..+.|+.+.....+
T Consensus        87 ~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~  160 (337)
T KOG1580|consen   87 MYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKEN  160 (337)
T ss_pred             HHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhhcccc
Confidence            344444433678888899999998666666667889999999999988887666      58899999999988753212


Q ss_pred             CCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHhc
Q 022504          158 PPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVS  236 (296)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~  236 (296)
                      .-       +       .........|+++.+++-..=++....|+++.+++. +...++.+..+.+.+.+..-.++.++
T Consensus       161 Kv-------~-------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGE  226 (337)
T KOG1580|consen  161 KV-------G-------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGE  226 (337)
T ss_pred             cc-------C-------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhh
Confidence            21       1       111234568999999999888999999999877763 33567777777777776655444433


Q ss_pred             C--CCcceeccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCceeeeccc
Q 022504          237 E--PSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMYQCSSP  283 (296)
Q Consensus       237 ~--~~~~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~  283 (296)
                      .  ...+..-.+..|+-+...++ ++.++.+..+..+++.||.. .|++
T Consensus       227 lweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLt-CSiv  273 (337)
T KOG1580|consen  227 LWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEEFGPLT-CSIV  273 (337)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHHhCCee-EEEE
Confidence            1  00111112234666777777 78999999999999999986 5553

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.81  E-value=0.0002  Score=60.11  Aligned_cols=101  Identities=22%  Similarity=0.337  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcC
Q 022504           83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIG  162 (296)
Q Consensus        83 g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~  162 (296)
                      .++..+.++.|..+++..+++.++.+....-.|+.++++++++||+.-.      |+++.++++.|++.+... ++    
T Consensus        60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~-DN----  128 (290)
T KOG4314|consen   60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYA-DN----  128 (290)
T ss_pred             EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEec-cc----
Confidence            3434567889999999999999999999999999999999999998654      699999999999887632 11    


Q ss_pred             CCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022504          163 ELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRK  208 (296)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~  208 (296)
                            .        ..+...|..++.++|..-|+|-++-|+....
T Consensus       129 ------~--------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn  160 (290)
T KOG4314|consen  129 ------E--------HADEIIGIACAVGSAFMAALYKVLFKMFIGN  160 (290)
T ss_pred             ------h--------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                  1        1234789999999999999999999987665

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.57  E-value=0.0015  Score=51.16  Aligned_cols=107  Identities=10%  Similarity=-0.130  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHHHHhhhHHHH
Q 022504          185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELA  264 (296)
Q Consensus       185 ~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~gv~~t~~ay  264 (296)
                      .++++++|+.+++..++.|-..|+.+ |..-|+.-..+..+.+.......++....-.. ....|.-++..|+ +++.++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~-~~k~~lflilSGl-a~glsw   81 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEI-GPKSWLFLILSGL-AGGLSW   81 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceeccccc-CcceehhhhHHHH-HHHHHH
Confidence            56889999999999999999899874 66777777777777777666555432111111 2234677788885 899999


Q ss_pred             HHHHHHHhcCCceee--ecccccHH-HHHHhhh
Q 022504          265 CAHGACRELDLFMYQ--CSSPWPLS-SLLSWMS  294 (296)
Q Consensus       265 ~l~~~~l~~~g~~~~--~s~~~p~~-~l~~~~~  294 (296)
                      .+|++++|+-.+++.  .+-+.|+- .++||+.
T Consensus        82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lf  114 (140)
T COG2510          82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILF  114 (140)
T ss_pred             HHHHHHHhcCCcceEEEcccccHHHHHHHHHHH
Confidence            999999998666552  33455554 5788763

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.54  E-value=0.0014  Score=60.32  Aligned_cols=140  Identities=11%  Similarity=0.032  Sum_probs=104.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHH
Q 022504            8 MRAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQL--TFSILCSFFLLSVF   85 (296)
Q Consensus         8 ~~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~--~~~~~~~~~~~g~~   85 (296)
                      .++.++-+.++.++.++|.+.+.-|..+. +.|+.++...=.+++.++..+.....+|+...+.  +.+....++..++.
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~  242 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC  242 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence            45688999999999999999999999876 5899988888888888887777666676654333  33333332222222


Q ss_pred             HHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (296)
Q Consensus        86 g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~  154 (296)
                      ....+.+.-..+++++|+...+=.-+..++.++++.++++|++++.      .++|.++.++|.++...
T Consensus       243 lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  243 LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence            2444445566788888876666566788999999999999998765      58999999999988653

Some of the sequences in this family are annotated as putative membrane proteins.

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.53  E-value=0.0027  Score=57.77  Aligned_cols=135  Identities=21%  Similarity=0.261  Sum_probs=107.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhh-cCCCC-----CCCHHHHHHHHHHHHH
Q 022504           13 PSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFH-RSERP-----QLTFSILCSFFLLSVF   85 (296)
Q Consensus        13 ~~l~l~~~~~~wg~~~i~~K~~~~-~~~~p~~~~~~R~~~A~l~l~~~~~~~~-r~~~~-----~~~~~~~~~~~~~g~~   85 (296)
                      |+..++++.++=|...+.-|..++ ++.++.+..++-..++.++.++...... .+..+     ..++..+..++..++.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            889999999999999999998885 5789999999999999998887766511 11111     0122344556667777


Q ss_pred             HHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        86 g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      +...+.+.+.-.+..++...+++..+--+++++++.++++|++++.      +|+|+.+.+.|..+=.
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence            7666677777889999999999999999999999999999998776      5899999999997644

; GO: 0055085 transmembrane transport

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.48  E-value=0.002  Score=56.24  Aligned_cols=132  Identities=13%  Similarity=0.027  Sum_probs=106.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 022504            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C   87 (296)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~   87 (296)
                      .+..+..+.+.+..+|...-+..|-+=+ ..+--.-+..-+.+|+++.+|+-.......  -.+++....-+..|+++ .
T Consensus       145 lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~ll~laLgvavlSSa  221 (292)
T COG5006         145 LDPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSLLPLALGVAVLSSA  221 (292)
T ss_pred             CCHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHHHHHHHHHHHHhcc
Confidence            4667888899999999999999988743 366677788899999999999865422111  13455556667788899 8


Q ss_pred             HHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhh
Q 022504           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGA  149 (296)
Q Consensus        88 ~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~  149 (296)
                      ..+.+...+++..+..+-+++.++.|.+..+.++++++|+++..|      |+|+..-+.+.
T Consensus       222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAs  277 (292)
T COG5006         222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAAS  277 (292)
T ss_pred             cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988774      67766655554

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.24  E-value=0.1  Score=46.53  Aligned_cols=181  Identities=10%  Similarity=-0.027  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhc-chhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhh
Q 022504           73 FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (296)
Q Consensus        73 ~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~-~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~l  151 (296)
                      .+.+...++.|++-...|..++.+.++...+++-=+. ..+=+.+.+.+.++++|.-+.+++  -.-.+++++.++|+++
T Consensus        42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~l  119 (269)
T PF06800_consen   42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVIL  119 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHH
Confidence            3666677777777788899999999999988887775 456567888999999998765542  1234577888888876


Q ss_pred             hhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 022504          152 VTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFA  231 (296)
Q Consensus       152 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~  231 (296)
                      -...++++.             ..++..+...|.+..+++.+.|-.|.++.|-  .+. |+.....=| .+|.+....+.
T Consensus       120 ts~~~~~~~-------------~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~lPq-aiGm~i~a~i~  182 (269)
T PF06800_consen  120 TSYQDKKSD-------------KSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAFLPQ-AIGMLIGAFIF  182 (269)
T ss_pred             hcccccccc-------------ccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhHHHH-HHHHHHHHHHH
Confidence            553221110             0112234567999999999999999998554  223 345544444 33333332221


Q ss_pred             HHHhcCCCcceeccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCcee
Q 022504          232 LIVVSEPSDWKLGLDIGLVAVLYSLLALGFELACAHGACRELDLFMY  278 (296)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~~~  278 (296)
                      ....+++. .+   ...|..+ ..|+ .=.++...|..+.++.|.+.
T Consensus       183 ~~~~~~~~-~~---k~~~~ni-l~G~-~w~ignl~~~is~~~~G~a~  223 (269)
T PF06800_consen  183 NLFSKKPF-FE---KKSWKNI-LTGL-IWGIGNLFYLISAQKNGVAT  223 (269)
T ss_pred             hhcccccc-cc---cchHHhh-HHHH-HHHHHHHHHHHhHHhccchh
Confidence            11112111 11   1112222 2333 23566677888888888665

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.0033  Score=55.46  Aligned_cols=211  Identities=16%  Similarity=-0.001  Sum_probs=121.7

Q ss_pred             HHHHHhC---CC-ChHHHHHHHHHHHHHHHHHHHHHhhcC----CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 022504           31 IKAAMSK---GI-NKYVIIVYSDALSSLFFLFCSFLFHRS----ERP--QLTFSILCSFFLLSVFGCSSQIFSFVGIQYS  100 (296)
Q Consensus        31 ~K~~~~~---~~-~p~~~~~~R~~~A~l~l~~~~~~~~r~----~~~--~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~t  100 (296)
                      .|+.++.   .. .|..+.++.++....+...+.....|-    ..|  +++.+..+.+..+.+.-.....+-.+.++|.
T Consensus        47 nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yV  126 (347)
T KOG1442|consen   47 NKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYV  126 (347)
T ss_pred             HHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhc
Confidence            5655542   12 477888888888776655554432221    112  2344444555555554433344555666666


Q ss_pred             CchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCc
Q 022504          101 SPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS  180 (296)
Q Consensus       101 sa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~  180 (296)
                      +.+---+==++.-+|++++++.++|+|-+.+.      ..+..+.+.|-     .-|.+..             ...+.-
T Consensus       127 gVaFYyvgRsLttvFtVlLtyvllkqkTs~~~------~~~C~lIi~GF-----~lGvdqE-------------~~~~~l  182 (347)
T KOG1442|consen  127 GVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFA------LGCCLLIILGF-----GLGVDQE-------------GSTGTL  182 (347)
T ss_pred             ceEEEEeccchhhhHHHHhHHhhccccccccc------ceeehhheehh-----eeccccc-------------cccCcc
Confidence            65433333346678999999999999865542      22332223332     1121110             112233


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCcce--eccch-hHHHHHHHH
Q 022504          181 WILGGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWK--LGLDI-GLVAVLYSL  256 (296)
Q Consensus       181 ~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--~~~~~-~~~~lly~g  256 (296)
                      ...|.++.+.+.++-|+..+..||...... .-..++.+....+.++.+|...+.++-...+.  ..++. .|..+...|
T Consensus       183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg  262 (347)
T KOG1442|consen  183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG  262 (347)
T ss_pred             chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence            468999999999999999999887655543 33578888999999988887665543212222  12222 355556666


Q ss_pred             HhhhHHHHH
Q 022504          257 LALGFELAC  265 (296)
Q Consensus       257 v~~t~~ay~  265 (296)
                      +++-.+.|.
T Consensus       263 lfgF~mgyv  271 (347)
T KOG1442|consen  263 LFGFAMGYV  271 (347)
T ss_pred             HHHHHhhhe
Confidence            665555553

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.20  E-value=0.0056  Score=54.49  Aligned_cols=133  Identities=10%  Similarity=0.021  Sum_probs=89.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHH
Q 022504            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCS   88 (296)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~   88 (296)
                      ++.|+++.++++.+.+.....+.|..   ++||++...-..+--.+--..+.... ++.  ..+++. .+-++-|++-..
T Consensus       135 ~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~--~~~k~~-~~nil~G~~w~i  207 (269)
T PF06800_consen  135 NMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQAIGMLIGAFIFNLFS-KKP--FFEKKS-WKNILTGLIWGI  207 (269)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHHHHHHHHHHHHHhhcc-ccc--ccccch-HHhhHHHHHHHH
Confidence            45679999999999999999988873   47887776644322222212222222 111  112222 333556666667


Q ss_pred             HHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhh
Q 022504           89 SQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF  150 (296)
Q Consensus        89 ~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~  150 (296)
                      .+.+++.+.+....+.+=.+.++.++...+-+.+++||+-++|++  ....+|+++.++|.+
T Consensus       208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence            778899999988888998999999999999999999999665532  234556666666654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.15  E-value=0.027  Score=52.05  Aligned_cols=174  Identities=13%  Similarity=0.049  Sum_probs=109.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--HHHhhcCC---CCCCCHHHHHHHHHHHH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFC--SFLFHRSE---RPQLTFSILCSFFLLSV   84 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~--~~~~~r~~---~~~~~~~~~~~~~~~g~   84 (296)
                      -..+++..++++++||++++..|..-+.+...++.+  -.+++.++ .|+  .....|..   ....+.+.+...++-|+
T Consensus         5 ~~~G~~~~~i~~~~~GS~~~p~K~~k~w~wE~~W~v--~gi~~wl~-~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~   81 (345)
T PRK13499          5 IILGIIWHLIGGASSGSFYAPFKKVKKWSWETMWSV--GGIFSWLI-LPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGA   81 (345)
T ss_pred             hHHHHHHHHHHHHHhhcccccccccCCCchhHHHHH--HHHHHHHH-HHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHH
Confidence            456899999999999999999998422222333331  11122222 121  11111111   01234555666666666


Q ss_pred             HHHHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhccc---ccccccccchhhhHHHhhhhhhhhhhc---cC
Q 022504           85 FGCSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKL---NWENKSSQAKSLGTFASIGGAFVVTFY---KG  157 (296)
Q Consensus        85 ~g~~~~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~~~~E~~---~~~~~~~~~~~iG~~l~~~G~~ll~~~---~g  157 (296)
                      +-...++.++.++++...+.+--+ ..++=+...++..++++|-.   +-++  ...-.+|+++.++|+++....   ++
T Consensus        82 ~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~k~  159 (345)
T PRK13499         82 LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQLKE  159 (345)
T ss_pred             HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            667889999999999988877655 46777788888888888653   2222  234678999999999887641   11


Q ss_pred             CCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHH
Q 022504          158 PPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWF  199 (296)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~  199 (296)
                      .+.         ..  +.....+.-+|.+..+++.+.++.|.
T Consensus       160 ~~~---------~~--~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        160 RKM---------GI--KKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             ccc---------cc--ccccccchHhHHHHHHHHHHHHHHHH
Confidence            100         00  00122345789999999999999999

>TIGR00688 rarD rarD protein

Probab=97.12  E-value=0.013  Score=51.79  Aligned_cols=105  Identities=7%  Similarity=0.015  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 022504           16 GMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE-RPQLTFSILCSFFLLSVFGCSSQIFSF   94 (296)
Q Consensus        16 ~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~-~~~~~~~~~~~~~~~g~~g~~~~~~~~   94 (296)
                      ..+.++++|+...+..|...+  -++......-.. ..++..+......... ......+++..++..|+.+...+.+++
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~  226 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKN--TDLAGFCLETLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFV  226 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            467789999999999998633  233332222111 1111111111111110 111123578888888877778899999


Q ss_pred             HHhhccCchhhhhhcchhhHHHHHHHHHH
Q 022504           95 VGIQYSSPTLSTAMLNLIPAFTFVLAIIF  123 (296)
Q Consensus        95 ~gl~~tsa~~asil~~~~Pv~~~ils~~~  123 (296)
                      +|+++.+++.++.+.++.|++..+++.++
T Consensus       227 ~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       227 IAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=97.04  E-value=0.11  Score=46.62  Aligned_cols=213  Identities=15%  Similarity=0.097  Sum_probs=130.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcc--hhhHHHH
Q 022504           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN--LIPAFTF  117 (296)
Q Consensus        40 ~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~--~~Pv~~~  117 (296)
                      +|..+.+..-+.+.++=.  +....+++... ..+.+......++.+.....+.+.+++|.|=-+-.+==+  ..|+  +
T Consensus        50 ~~~fL~~~q~l~~~~~s~--~~l~~~k~~~~-~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPV--m  124 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSY--AMLKWWKKELS-GVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPV--M  124 (327)
T ss_pred             ccHHHHHHHHHHHHHHHH--HHHhcccccCC-CCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHH--H
Confidence            455666666666665532  22322332211 122244566777877788889999999997333222222  4554  5


Q ss_pred             HHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHH
Q 022504          118 VLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSA  197 (296)
Q Consensus       118 ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~  197 (296)
                      +.+.++.+.|.+.+      +.+...+.-.|+.+..+++..+..            +..+..+...|..++...-+.=++
T Consensus       125 lmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~s~------------~~~g~~ns~~G~~Ll~~~L~fDgf  186 (327)
T KOG1581|consen  125 LMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSDSS------------SKSGRENSPIGILLLFGYLLFDGF  186 (327)
T ss_pred             HHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCCCc------------cccCCCCchHhHHHHHHHHHHHhh
Confidence            56778887776554      566666777787776654322100            012223457899999999888889


Q ss_pred             HHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHhcC-CCcce---eccchhHHHHHHHHHhhhHHHHHHHHHHHh
Q 022504          198 WFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE-PSDWK---LGLDIGLVAVLYSLLALGFELACAHGACRE  272 (296)
Q Consensus       198 ~~v~~k~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~---~~~~~~~~~lly~gv~~t~~ay~l~~~~l~  272 (296)
                      -+..|+++.+++. ++..+.+...+++.+...... +.++. ....+   ..++ .+.-++.... +..++....++-++
T Consensus       187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp~-~~~Di~l~s~-~gavGQ~FI~~TI~  263 (327)
T KOG1581|consen  187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHPD-VAFDILLYST-CGAVGQLFIFYTIE  263 (327)
T ss_pred             HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcChh-HHHHHHHHHH-hhhhhhheehhhHh
Confidence            9999999988753 457788888888888887763 32221 11111   1222 3343433333 46788889999999


Q ss_pred             cCCcee
Q 022504          273 LDLFMY  278 (296)
Q Consensus       273 ~~g~~~  278 (296)
                      +-||..
T Consensus       264 ~FGslt  269 (327)
T KOG1581|consen  264 RFGSLT  269 (327)
T ss_pred             hcccHH
Confidence            999865

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.01  E-value=0.034  Score=50.63  Aligned_cols=119  Identities=15%  Similarity=0.200  Sum_probs=82.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 022504            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C   87 (296)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~   87 (296)
                      +...+....+.++++-+.....-|..... .+.   ...               ++ +..++...++  +..+.|+.- .
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~~---------------~~-~~~~~~~l~~--~~W~~G~~~~~   61 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GSL---------------RA-GSGGRSYLRR--PLWWIGLLLMV   61 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---ccc---------------cc-cchhhHHHhh--HHHHHHHHHHh
Confidence            34567778888888888888888876432 000   000               00 0001111122  233455555 6


Q ss_pred             HHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhc
Q 022504           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (296)
Q Consensus        88 ~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~  155 (296)
                      ....+.+.++.+.+++..+-+..+.-++..+++..+++||++++      .++|+.+++.|..+++..
T Consensus        62 ~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~  123 (300)
T PF05653_consen   62 LGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF  123 (300)
T ss_pred             cchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe
Confidence            66788899999999999999988999999999999999999776      589999999999887643

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=96.96  E-value=0.008  Score=48.53  Aligned_cols=108  Identities=18%  Similarity=0.113  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc------chhHHHHHHHHHHHHHHHHHHHHHHhcCCCc--ce-ec------cchh
Q 022504          184 GGFFLAAEAFMNSAWFILQALILRKF------AAVLIIMFYLFFFNTILSTAFALIVVSEPSD--WK-LG------LDIG  248 (296)
Q Consensus       184 G~ll~l~aa~~~a~~~v~~k~~~~~~------~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~--~~-~~------~~~~  248 (296)
                      |.++++.+.++.|++.+..|+..++.      .++..+..+....+.+.+.+..++.|.....  .. ..      ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            56789999999999999999976662      2578888999999999999998888764311  10 00      1122


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhcCCceeeecccc----cHHHHHHhh
Q 022504          249 LVAVLYSLLALGFELACAHGACRELDLFMYQCSSPW----PLSSLLSWM  293 (296)
Q Consensus       249 ~~~lly~gv~~t~~ay~l~~~~l~~~g~~~~~s~~~----p~~~l~~~~  293 (296)
                      +..++..|+ ....-....++.+++.+|.. .++..    +++.+++|+
T Consensus        81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt-~~v~~~~K~~~~i~~s~~  127 (153)
T PF03151_consen   81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLT-YSVLGNVKRILVILLSVI  127 (153)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhhhcChhH-HHHHHHHHHHHHHHHHhh
Confidence            444555555 34566678889999999987 56554    444455543

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.93  E-value=0.0028  Score=57.86  Aligned_cols=136  Identities=15%  Similarity=0.160  Sum_probs=106.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHHH-HHHHHhhcCCC---C--CCCHHHHHHHH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMS---KGINKYVIIVYSDALSSLFFL-FCSFLFHRSER---P--QLTFSILCSFF   80 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~---~~~~p~~~~~~R~~~A~l~l~-~~~~~~~r~~~---~--~~~~~~~~~~~   80 (296)
                      |+.|......+.+....--++.|..+.   ..+|+..+..+---++.+.++ |+....+....   .  ..+.+ .....
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~  239 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL  239 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence            678999999999999999999999883   358999999999999999999 87665443332   1  22333 33444


Q ss_pred             HHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504           81 LLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (296)
Q Consensus        81 ~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll  152 (296)
                      ..+++....+...|+.++.+||.+-++....==.++...++++++|+++..      +..|..+++.|+++=
T Consensus       240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y  305 (316)
T KOG1441|consen  240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLY  305 (316)
T ss_pred             HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHH
Confidence            455656777888999999999999888876555556667888889988777      489999999999763

>PRK13499 rhamnose-proton symporter; Provisional

Probab=96.68  E-value=0.086  Score=48.80  Aligned_cols=145  Identities=12%  Similarity=0.002  Sum_probs=87.1

Q ss_pred             hhhhHHHHHHHHHHHHHHHH-------HHHHHHHhCCCChHHHHHHHHH---HHHHHHH-HHHHHhh-c-CCCC----C-
Q 022504            9 RAALPSVGMVIVLLAQVSNM-------EVIKAAMSKGINKYVIIVYSDA---LSSLFFL-FCSFLFH-R-SERP----Q-   70 (296)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~-------i~~K~~~~~~~~p~~~~~~R~~---~A~l~l~-~~~~~~~-r-~~~~----~-   70 (296)
                      +..|+...++++.+..+...       +.-+.+...+.||.....-.+.   ++..+.- .++.++. | ++.+    + 
T Consensus       171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~  250 (345)
T PRK13499        171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS  250 (345)
T ss_pred             chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence            44789999998888887777       6666654456887766666555   4443322 2223221 2 2111    1 


Q ss_pred             CC----HHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhh---hc-chhhHHHHHHHHHHhhcccccccccccchhhhH
Q 022504           71 LT----FSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTA---ML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGT  142 (296)
Q Consensus        71 ~~----~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asi---l~-~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~  142 (296)
                      .+    .++.....+-|++-...+.++..|-+......+.+   +. ++.-++..+-+ +++||+-+-.+|..+.-++|+
T Consensus       251 ~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwG-i~lkE~K~a~~k~~~~l~~G~  329 (345)
T PRK13499        251 LAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWG-LVLKEWKGASRRPVRVLSLGC  329 (345)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhh-hhhhhccCCCccchhHHHHHH
Confidence            12    22223334444444666778888888775555545   55 44445544444 469999774455566778899


Q ss_pred             HHhhhhhhhhhh
Q 022504          143 FASIGGAFVVTF  154 (296)
Q Consensus       143 ~l~~~G~~ll~~  154 (296)
                      ++-+.|.+++..
T Consensus       330 vliI~g~~lig~  341 (345)
T PRK13499        330 VVIILAANIVGL  341 (345)
T ss_pred             HHHHHHHHHHhh
Confidence            999999988763

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.55  E-value=0.009  Score=46.12  Aligned_cols=110  Identities=17%  Similarity=0.172  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022504           18 VIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGI   97 (296)
Q Consensus        18 ~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl   97 (296)
                      +++.++||...++.|.+.. +.++..-.. |..-....++             .+++   +.+... ++-...+.|++.+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~Ll-------------~n~~---y~ipf~-lNq~GSv~f~~~L   62 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKFLL-------------LNPK---YIIPFL-LNQSGSVLFFLLL   62 (113)
T ss_pred             eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHHHH-------------HhHH---HHHHHH-HHHHHHHHHHHHH
Confidence            4578999999999999865 355443331 3222111110             1233   222221 1344567888999


Q ss_pred             hccCchhhhhhc-chhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504           98 QYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (296)
Q Consensus        98 ~~tsa~~asil~-~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll  152 (296)
                      ..++-+.+.-+. ++.=++|.+.++++.+|..+++      .++|+.+.+.|+.+.
T Consensus        63 ~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   63 GSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             hcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            999999999886 6777888888876655554433      589999999998653

Many members are annotated as potential transmembrane proteins.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.41  E-value=0.12  Score=46.27  Aligned_cols=126  Identities=10%  Similarity=0.006  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 022504           19 IVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSE--RPQLTFSILCSFFLLSVFGCSSQIFSFVG   96 (296)
Q Consensus        19 ~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~--~~~~~~~~~~~~~~~g~~g~~~~~~~~~g   96 (296)
                      ..++.||..+..=|..   ++|+.+=...-...-.+.-+.+.+...-..  ...-+.+++..+...|........++..|
T Consensus       155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~a  231 (293)
T COG2962         155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAA  231 (293)
T ss_pred             HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence            3467788888877764   488888777777766666555544432221  11124566777888888888899999999


Q ss_pred             hhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           97 IQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        97 l~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      -+..+-+.-++++|..|.+..+++.++++|+++.-      |.++-+..-+|+++..
T Consensus       232 a~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~  282 (293)
T COG2962         232 AKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS  282 (293)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999765      4667666667766544

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.25  E-value=0.094  Score=40.31  Aligned_cols=60  Identities=12%  Similarity=0.020  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHhhccCchhhh-hhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504           87 CSSQIFSFVGIQYSSPTLST-AMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (296)
Q Consensus        87 ~~~~~~~~~gl~~tsa~~as-il~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll  152 (296)
                      ...+.+...++++.+.+.|= +....--+.+.+.+.++++|++++.      |++|+.+.+.|++.+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            56777888899999877664 4456777888999999999998876      599999999999765

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=95.90  E-value=0.01  Score=52.38  Aligned_cols=135  Identities=16%  Similarity=0.119  Sum_probs=97.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 022504           11 ALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQ   90 (296)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~   90 (296)
                      .++..+.+.+++.-+...+..|.. .+..+....+.+=.+++.+.-+..+.... +...+..+||++.+..+|+.|.+.|
T Consensus       190 ~~gt~aai~s~lf~asvyIilR~i-Gk~~h~~msvsyf~~i~lV~s~I~~~~ig-~~~lP~cgkdr~l~~~lGvfgfigQ  267 (346)
T KOG4510|consen  190 IPGTVAAISSVLFGASVYIILRYI-GKNAHAIMSVSYFSLITLVVSLIGCASIG-AVQLPHCGKDRWLFVNLGVFGFIGQ  267 (346)
T ss_pred             CCchHHHHHhHhhhhhHHHHHHHh-hccccEEEEehHHHHHHHHHHHHHHhhcc-ceecCccccceEEEEEehhhhhHHH
Confidence            345666677777777778888875 44567666666666666555444332222 2222345678888888999999999


Q ss_pred             HHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           91 IFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        91 ~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      ++...|+|.-.++-.+++.++.-++..+.-.++++|-+      +.+.|.|.++...-.+...
T Consensus       268 IllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~P------t~ws~~Ga~~vvsS~v~~a  324 (346)
T KOG4510|consen  268 ILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWP------TIWSWVGAVMVVSSTVWVA  324 (346)
T ss_pred             HHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCC------hHHHhhceeeeehhHHHHH
Confidence            99999999999999999999999999999999988764      4556777766555555444

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=95.84  E-value=0.23  Score=39.87  Aligned_cols=107  Identities=16%  Similarity=0.173  Sum_probs=71.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcch-hhHHHHH
Q 022504           40 NKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNL-IPAFTFV  118 (296)
Q Consensus        40 ~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~-~Pv~~~i  118 (296)
                      ||+.-.+.-+..+.+++..+....+++..++.+ +.-++...-|++|..+..+..+......++++..+.-+ +=+...+
T Consensus        29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~-~~p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~  107 (138)
T PF04657_consen   29 SPLVASFISFGVGFILLLIILLITGRPSLASLS-SVPWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL  107 (138)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhcccccchhc-cCChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            599999999999999988877665443222111 11124445778887778888889999998888877654 4344444


Q ss_pred             HHHH--HhhcccccccccccchhhhHHHhhhhhhh
Q 022504          119 LAII--FRLEKLNWENKSSQAKSLGTFASIGGAFV  151 (296)
Q Consensus       119 ls~~--~~~E~~~~~~~~~~~~~iG~~l~~~G~~l  151 (296)
                      +.++  +..||    ++.+..|.+|+.+.++|+++
T Consensus       108 iD~fG~fg~~~----~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen  108 IDHFGLFGAPK----RPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHccccCCCC----CCCCHHHHHHHHHHHHHHhC
Confidence            5553  21222    22344579999999999853

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=95.77  E-value=0.037  Score=43.30  Aligned_cols=67  Identities=16%  Similarity=0.162  Sum_probs=54.6

Q ss_pred             HHHHH-HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504           82 LSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (296)
Q Consensus        82 ~g~~g-~~~~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~  154 (296)
                      ..+.. ...+.+...++++.+.+.|=.+ ....-+.+.+++.++++|+++++      |++|+.+.++|++.+-.
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence            34445 6778888999999988877555 46777888999999999999877      59999999999988753

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=95.76  E-value=0.13  Score=39.68  Aligned_cols=65  Identities=15%  Similarity=0.234  Sum_probs=51.8

Q ss_pred             HHHH-HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           83 SVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        83 g~~g-~~~~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      .+.+ ...+.+...++++.+.+.|=.+ ..+.-+.+.++++++++|++++.      |++|+.+.++|++.+-
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            3445 6677777888888887776544 45667788899999999999877      5999999999998875

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.60  E-value=0.096  Score=38.97  Aligned_cols=56  Identities=18%  Similarity=0.110  Sum_probs=32.3

Q ss_pred             HHHH-HHHHHHHHHHhhccCchhh-hhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHH
Q 022504           83 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA  144 (296)
Q Consensus        83 g~~g-~~~~~~~~~gl~~tsa~~a-sil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l  144 (296)
                      .+.+ ...+.++..++++.+.+.+ ++...+..+.+.+.+..+++|+++.+|      ++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------Hhheee
Confidence            3434 6778899999999998888 555678899999999999999998874      777654

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=95.57  E-value=0.1  Score=39.67  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=53.6

Q ss_pred             HHHH-HHHHHHHHHHhhccCchhh-hhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           83 SVFG-CSSQIFSFVGIQYSSPTLS-TAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        83 g~~g-~~~~~~~~~gl~~tsa~~a-sil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      .+.+ ...+.+...++|+.+.+.| ++....--+.+.+.++++++||.+..      |++|+.+.++|++.+-
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            3445 6778888999999997776 45567788889999999999999876      6999999999998764

>PRK11431 multidrug efflux system protein; Provisional

Probab=95.35  E-value=0.24  Score=37.79  Aligned_cols=64  Identities=9%  Similarity=-0.042  Sum_probs=52.2

Q ss_pred             HHH-HHHHHHHHHHhhccCchhhh-hhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           84 VFG-CSSQIFSFVGIQYSSPTLST-AMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        84 ~~g-~~~~~~~~~gl~~tsa~~as-il~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      +.+ ...+.+...++++.+.+.|= +....--+.+.+++.++++|++++.      |++|+.+.+.|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            444 67778888999999877664 4456777888999999999999877      5999999999998763

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.42  E-value=2  Score=34.82  Aligned_cols=138  Identities=8%  Similarity=-0.017  Sum_probs=73.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHH-HHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Q 022504           11 ALPSVGMVIVLLAQVSNMEV-IKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSS   89 (296)
Q Consensus        11 ~~~~l~l~~~~~~wg~~~i~-~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~   89 (296)
                      +...+..+.+..+-.....+ ++.. +..=+|+.-.+..+..+..++..+.+..+++.......+.-++...-|++|..+
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~-~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~   82 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLA-RYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIF   82 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHH-HHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhh
Confidence            33444444444444433333 4444 322369999999999999998888776332222121122223444555666444


Q ss_pred             HHHHHHHhhccCchhhhhh-cchhhHHHHHHHHH-HhhcccccccccccchhhhHHHhhhhhhhh
Q 022504           90 QIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAII-FRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (296)
Q Consensus        90 ~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~-~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll  152 (296)
                      -...........++....+ ..-+=+.-.++..+ .++++   ++.++..|++|+++.++|++++
T Consensus        83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~---~~~~~~~r~lgi~L~l~gil~~  144 (150)
T COG3238          83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVP---KRPLNLPRILGILLVLAGILLA  144 (150)
T ss_pred             hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCC---cCCCCHHHHHHHHHHHHHHHHh
Confidence            4444444444444433333 33344444444433 22232   2345677899999999995443

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.32  E-value=0.84  Score=41.44  Aligned_cols=138  Identities=17%  Similarity=0.222  Sum_probs=97.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhc-C----CCCCC-CHHHHHHHHHH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHR-S----ERPQL-TFSILCSFFLL   82 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~-~~~~p~~~~~~R~~~A~l~l~~~~~~~~r-~----~~~~~-~~~~~~~~~~~   82 (296)
                      +..+|.++....+.=....+-.|..++ .+.+-+.++++..+++.+.+....+..+- +    ..+.. +...+..+.+-
T Consensus       155 ~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lS  234 (314)
T KOG1444|consen  155 NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLS  234 (314)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHH
Confidence            445788888888888888888998776 46788999999999999988777654321 0    11111 12233445555


Q ss_pred             HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        83 g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      +++|.+-.++.++..+.+|+.+-++.....-..+.+...++.+++.++.      ..+|+.+++.|-++=.
T Consensus       235 cv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  235 CVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence            5566777888889999999999988885555555555555666666554      6899999999986643

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=93.31  E-value=0.97  Score=41.98  Aligned_cols=139  Identities=12%  Similarity=0.157  Sum_probs=101.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHHHHHHHHhhc---CCCCCCCHHHHHHHHHH
Q 022504            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSK---GINKYVIIVYSDALSSLFFLFCSFLFHR---SERPQLTFSILCSFFLL   82 (296)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~---~~~p~~~~~~R~~~A~l~l~~~~~~~~r---~~~~~~~~~~~~~~~~~   82 (296)
                      +...|-++.+++++.+|..-+..|.=.+.   .+|--.+..+=.++..++++|..+..++   ++.+-++..+...++..
T Consensus       244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~  323 (416)
T KOG2765|consen  244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN  323 (416)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence            34678999999999999999999986543   3677777777788888888876654332   22222334556667788


Q ss_pred             HHHH-HHHHHHHHHHhhccCchhhhhhcc-hhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504           83 SVFG-CSSQIFSFVGIQYSSPTLSTAMLN-LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (296)
Q Consensus        83 g~~g-~~~~~~~~~gl~~tsa~~asil~~-~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~  154 (296)
                      ++++ ...=+++.+|.-.|++-.+++=+. +.|+ .++.-.++++.+      |+...++|....+.|-+.+..
T Consensus       324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~------~S~~~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKH------PSALYIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCC------CCHHHHHHHHHHHHHHhheec
Confidence            8999 899999999999999998887765 4554 444555554444      456679999999999877753

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=93.09  E-value=2.1  Score=37.14  Aligned_cols=211  Identities=15%  Similarity=0.145  Sum_probs=121.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHH
Q 022504           41 KYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLA  120 (296)
Q Consensus        41 p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils  120 (296)
                      -+.+.+.+.....+-++.+-+.+-    -+.+.++.+..+..+++-.........+++|.+...-+++-++.-+.+...-
T Consensus        37 nflll~vQSlvcvv~l~iLk~l~~----~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygE  112 (309)
T COG5070          37 NFLLLAVQSLVCVVGLLILKFLRL----VEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGE  112 (309)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhH----hheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhH
Confidence            356666776666655554322211    1112233334444555444444556678999999999999888877777666


Q ss_pred             HHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 022504          121 IIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFI  200 (296)
Q Consensus       121 ~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v  200 (296)
                      ..+++.|++-.      +.....+-+.--+.-.  .|+.       |...    .. ....+.|-+++...+++-|.|..
T Consensus       113 vl~Fgg~vtsl------~l~SFilMvlSS~va~--w~D~-------q~~~----~~-~~~lN~GY~Wm~~NclssaafVL  172 (309)
T COG5070         113 VLFFGGRVTSL------ELLSFILMVLSSVVAT--WGDQ-------QASA----FK-AQILNPGYLWMFTNCLSSAAFVL  172 (309)
T ss_pred             HHHhcCccchh------hHHHHHHHHHHHHHhc--cchh-------hHHH----HH-hcccCCceEEEehhhHhHHHHHH
Confidence            67777776432      2333333333322211  1111       0000    00 11235689999999999999999


Q ss_pred             HHHHHHHh--cchhHHHHHHHHHHHHHHHHHHHHHHhcC-CCcce-eccchhHHHHHHHHHhhhHHHHHHHHHHHhcCCc
Q 022504          201 LQALILRK--FAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWK-LGLDIGLVAVLYSLLALGFELACAHGACRELDLF  276 (296)
Q Consensus       201 ~~k~~~~~--~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~-~~~~~~~~~lly~gv~~t~~ay~l~~~~l~~~g~  276 (296)
                      ..||..+-  ..| +.-.++..+.+...++.+.+++|+. +.... ..+.+...++...|+.+-+++|. -.|+++-.++
T Consensus       173 ~mrkri~ltNf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~-saWcvrVtSS  250 (309)
T COG5070         173 IMRKRIKLTNFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYC-SAWCVRVTSS  250 (309)
T ss_pred             HHHHhhcccccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhc-cceeEeehhh
Confidence            98886543  222 4567888899888888888777652 22111 11223455677788866666664 3556665444


Q ss_pred             e
Q 022504          277 M  277 (296)
Q Consensus       277 ~  277 (296)
                      +
T Consensus       251 T  251 (309)
T COG5070         251 T  251 (309)
T ss_pred             h
Confidence            4

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.70  E-value=0.29  Score=42.60  Aligned_cols=73  Identities=18%  Similarity=0.270  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           75 ILCSFFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        75 ~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      .+..+..+++.+++.|.+.|.-+.+-+|-+-+++..+--+|+++.+.+++.++++.|      +|+|.++-+.|...=.
T Consensus       240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence            345577788888888999999999999999999999999999999999999999877      5899999999876543

>TIGR00803 nst UDP-galactose transporter

Probab=92.42  E-value=0.7  Score=39.80  Aligned_cols=59  Identities=12%  Similarity=0.073  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhh
Q 022504           86 GCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAF  150 (296)
Q Consensus        86 g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~  150 (296)
                      +...+.+..+-++|.++..-+....+.++++.+++.++++|+++..      +++|..+.+.|+.
T Consensus       162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            3555667888899999999999999999999999999999998766      5899999888864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.18  E-value=0.1  Score=47.25  Aligned_cols=118  Identities=16%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-H
Q 022504            9 RAALPSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFG-C   87 (296)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g-~   87 (296)
                      ++.++....+.+.++.|+++++-|.....           ...     .   -.+..+ .+..-.++  +..+.|++- .
T Consensus        18 d~~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~-----~---~~ra~~-gg~~yl~~--~~Ww~G~ltm~   75 (335)
T KOG2922|consen   18 DNIIGLVLAISSSIFIGSSFILKKKGLKR-----------AGA-----S---GLRAGE-GGYGYLKE--PLWWAGMLTMI   75 (335)
T ss_pred             CceeeeeehhhccEEEeeehhhhHHHHHH-----------Hhh-----h---cccccC-CCcchhhh--HHHHHHHHHHH
Confidence            56778888889999999999999987643           100     0   011111 11111233  334566666 6


Q ss_pred             HHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504           88 SSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (296)
Q Consensus        88 ~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~  154 (296)
                      ......|-+..+.+++..+-+-.+.-+.-.+++..++|||++++.      .+|..+|+.|-.+++.
T Consensus        76 vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~  136 (335)
T KOG2922|consen   76 VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVI  136 (335)
T ss_pred             HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEE
Confidence            677778888999999999999999999999999999999998874      7899999999999884

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=91.57  E-value=2.7  Score=38.08  Aligned_cols=138  Identities=15%  Similarity=0.159  Sum_probs=97.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----CCCHHHHHHHHHH
Q 022504            9 RAALPSVGMVIVLLAQVSNMEVIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERP-----QLTFSILCSFFLL   82 (296)
Q Consensus         9 ~~~~~~l~l~~~~~~wg~~~i~~K~~~~-~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~-----~~~~~~~~~~~~~   82 (296)
                      +...++..++.-.+.=|.....-+.... ..++++.+.+.-.+..++.=.... ......++     +.++.-++.+++.
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp~~~~Di~l~  247 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHPDVAFDILLY  247 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcChhHHHHHHHH
Confidence            3455666666544444555544444443 468999999998888777655442 22222222     2234456678888


Q ss_pred             HHHHHHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhh
Q 022504           83 SVFGCSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT  153 (296)
Q Consensus        83 g~~g~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~  153 (296)
                      +.+|...|.+.++-++.=.+-.-+.++.+--++..+++.+.+++++++.|      |+|+.+-|.|+.+=.
T Consensus       248 s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  248 STCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEI  312 (327)
T ss_pred             HHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHH
Confidence            99898889998888888888888888889999999999999999998885      788888888887654

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=90.72  E-value=3.6  Score=36.74  Aligned_cols=211  Identities=12%  Similarity=0.130  Sum_probs=111.6

Q ss_pred             CccccchhhhHHHHHHHHHH-HHHHHHHHHHHHHh-CCCChH--HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 022504            3 VDMGSMRAALPSVGMVIVLL-AQVSNMEVIKAAMS-KGINKY--VIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCS   78 (296)
Q Consensus         3 ~~~~~~~~~~~~l~l~~~~~-~wg~~~i~~K~~~~-~~~~p~--~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~   78 (296)
                      .|+...+|+.-.+....+.+ .+=.++..-.+..+ .++.|+  .+...++..-..+-+.-....+ .+++..++|.   
T Consensus        33 ~~ls~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~-~k~r~iP~rt---  108 (367)
T KOG1582|consen   33 FNLSDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQ-TKRRVIPWRT---  108 (367)
T ss_pred             eccccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeec-ccceecchhH---
Confidence            34445556554443322221 12233334444332 246654  4555555554333222111111 1122245554   


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCchhhhhhcc--hhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhcc
Q 022504           79 FFLLSVFGCSSQIFSFVGIQYSSPTLSTAMLN--LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK  156 (296)
Q Consensus        79 ~~~~g~~g~~~~~~~~~gl~~tsa~~asil~~--~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~  156 (296)
                      ...++.+..+.+.+..-++.|.+=-+-.++-+  +.|++  +-+.++-+.|      ++....++..+-.+|.++.++.+
T Consensus       109 Y~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVm--iggifIqGkR------Y~v~d~~aA~lm~lGli~FTLAD  180 (367)
T KOG1582|consen  109 YVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVM--IGGIFIQGKR------YGVHDYIAAMLMSLGLIWFTLAD  180 (367)
T ss_pred             hhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhh--heeeeecccc------ccHHHHHHHHHHHHHHHhhhhcc
Confidence            33444444344444445555554333333333  45553  3455554444      45567889999999998877542


Q ss_pred             CCCCcCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHHHHh
Q 022504          157 GPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVV  235 (296)
Q Consensus       157 g~~~~~~~~~~~~~~~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~  235 (296)
                      ..                .+.+. +..|..+.-+|-++=|.-.-+|+|..+..+. .-.+.+++..+|.+.........+
T Consensus       181 s~----------------~sPNF-~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTg  243 (367)
T KOG1582|consen  181 SQ----------------TSPNF-NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTG  243 (367)
T ss_pred             cc----------------cCCCc-ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcc
Confidence            21                11111 2568888888888888888899998888763 235667777888887776665555


Q ss_pred             cCCCcce
Q 022504          236 SEPSDWK  242 (296)
Q Consensus       236 ~~~~~~~  242 (296)
                      +-.+.|+
T Consensus       244 e~f~a~~  250 (367)
T KOG1582|consen  244 ELFSAWT  250 (367)
T ss_pred             cchhhhH
Confidence            4444453

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=90.67  E-value=2.7  Score=33.61  Aligned_cols=90  Identities=12%  Similarity=-0.051  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeccchhHHHHHHHHHhhhHHHH
Q 022504          185 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSLLALGFELA  264 (296)
Q Consensus       185 ~ll~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~lly~gv~~t~~ay  264 (296)
                      .++.+.+...-+....+..++.++..+|..-+.+.+..|.+.+..+..+.++.  ++....+..|+..+ -|++ ...--
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~V   78 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHHH
Confidence            46778888899999999999999986688889999999999988887766553  22211112233332 4443 44555


Q ss_pred             HHHHHHHhcCCcee
Q 022504          265 CAHGACRELDLFMY  278 (296)
Q Consensus       265 ~l~~~~l~~~g~~~  278 (296)
                      ....+.++|+|+..
T Consensus        79 ~~~~~~vp~lG~~~   92 (138)
T PF04657_consen   79 LSNIILVPRLGAAL   92 (138)
T ss_pred             HHHHHHhhhhhHHH
Confidence            67778889999877

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=90.02  E-value=0.053  Score=47.34  Aligned_cols=171  Identities=13%  Similarity=0.075  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022504           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (296)
Q Consensus        13 ~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~   92 (296)
                      .++..++=++.||+...++..-   +-+|.+-.----+-|.++-+.+.++  +  .|..+.+.+..-++-|++-.+.|..
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~--~--~p~~T~~~~iv~~isG~~Ws~GQ~~   75 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF--V--SPELTLTIFIVGFISGAFWSFGQAN   75 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee--e--cCccchhhHHHHHHhhhHhhhhhhh
Confidence            4566777889999988875532   3466655444333444443333322  2  2345665555555555555778999


Q ss_pred             HHHHhhccCchhhhhhc-chhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCC
Q 022504           93 SFVGIQYSSPTLSTAML-NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPR  171 (296)
Q Consensus        93 ~~~gl~~tsa~~asil~-~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~  171 (296)
                      ++.+.++...++|--+. ..+=+-+-+++.+.++|--+..+.  -...+++++.++|+.+-. .++++     +     +
T Consensus        76 Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs-~~~~~-----n-----k  142 (288)
T COG4975          76 QFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTS-KQDRN-----N-----K  142 (288)
T ss_pred             hhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEee-eeccc-----c-----c
Confidence            99999999999988775 456677777888889887543321  112345666777775543 22211     0     1


Q ss_pred             cccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 022504          172 RLLLSPQLSWILGGFFLAAEAFMNSAWFILQALI  205 (296)
Q Consensus       172 ~~~~~~~~~~~~G~ll~l~aa~~~a~~~v~~k~~  205 (296)
                      +  .++..+.-.|....+.+.+.|-.|.++.+..
T Consensus       143 ~--~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f  174 (288)
T COG4975         143 E--EENPSNLKKGIVILLISTLGYVGYVVLFQLF  174 (288)
T ss_pred             c--ccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence            1  1122234578888889999999999875443

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=88.75  E-value=8.3  Score=35.06  Aligned_cols=137  Identities=16%  Similarity=0.072  Sum_probs=85.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHHHHHHHhhcCCC----C---CCCHHHHHH
Q 022504           10 AALPSVGMVIVLLAQVSNMEVIKAAMSKG----INKYVIIVYSDALSSLFFLFCSFLFHRSER----P---QLTFSILCS   78 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~~K~~~~~~----~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~----~---~~~~~~~~~   78 (296)
                      +..|......+.++=|.-+.+++..++++    =+|++....=.-.-.+.++|..+.+++...    +   ..+..+..+
T Consensus       162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r  241 (349)
T KOG1443|consen  162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR  241 (349)
T ss_pred             eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence            44577778888888899999999988742    247777666665566666676655543221    0   111111111


Q ss_pred             -HHHHHHHH---HHHHHHHHHHhhccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504           79 -FFLLSVFG---CSSQIFSFVGIQYSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (296)
Q Consensus        79 -~~~~g~~g---~~~~~~~~~gl~~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll  152 (296)
                       ...+++.|   .+--...+.=+..|+.-+-++..---=+.+.+++..+++|+++..      .|.|..++..|+.+=
T Consensus       242 v~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  242 VIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence             22233333   222223444455666555555555555778889999999999755      589999999999763

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=87.66  E-value=15  Score=32.60  Aligned_cols=134  Identities=11%  Similarity=-0.007  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 022504           13 PSVGMVIVLLAQVSNMEVIKAAMSKGINKYVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIF   92 (296)
Q Consensus        13 ~~l~l~~~~~~wg~~~i~~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~   92 (296)
                      ++++.+++.+.+|++++-.|.- + .-|++.+-++-.....++=+.+...  +. .|+...    +..+-|.+-+..+.+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-~-~gDg~~fQw~~~~~i~~~g~~v~~~--~~-~p~f~p----~amlgG~lW~~gN~~   71 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-D-TGDGFFFQWVMCSGIFLVGLVVNLI--LG-FPPFYP----WAMLGGALWATGNIL   71 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-c-CCCcHHHHHHHHHHHHHHHHHHHHh--cC-CCccee----HHHhhhhhhhcCcee
Confidence            4678899999999999999974 4 3577655554443333332222222  22 222221    112222323444555


Q ss_pred             HHHHhhccCchhhhhhcch-hhHHHHHHHHH-HhhcccccccccccchhhhHHHhhhhhhhhhhcc
Q 022504           93 SFVGIQYSSPTLSTAMLNL-IPAFTFVLAII-FRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK  156 (296)
Q Consensus        93 ~~~gl~~tsa~~asil~~~-~Pv~~~ils~~-~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~  156 (296)
                      ..-.++...-+.+-.+-++ .-+.-...+.+ +++++.+.-. ......+|++++++|..+..+.+
T Consensus        72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik  136 (254)
T PF07857_consen   72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIK  136 (254)
T ss_pred             ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeec
Confidence            5556666666666666554 33333334433 3444332221 12346899999999998876544

The region concerned is approximately 280 residues long.

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=85.73  E-value=7.5  Score=34.98  Aligned_cols=136  Identities=15%  Similarity=0.179  Sum_probs=90.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHH-HHHHHhCCCChHHHHHHHHHHHHHHHHHHH----HHhhc-C--CCCCCCHHHHHHH--
Q 022504           10 AALPSVGMVIVLLAQVSNMEV-IKAAMSKGINKYVIIVYSDALSSLFFLFCS----FLFHR-S--ERPQLTFSILCSF--   79 (296)
Q Consensus        10 ~~~~~l~l~~~~~~wg~~~i~-~K~~~~~~~~p~~~~~~R~~~A~l~l~~~~----~~~~r-~--~~~~~~~~~~~~~--   79 (296)
                      -..+.++.++++++-+.-++. -|.+..++++|...+.+...++..++-.+.    ++... .  ..|+-.+.|+...  
T Consensus       174 iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~  253 (372)
T KOG3912|consen  174 IITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFA  253 (372)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHH
Confidence            356889999999999999988 455555689999999999988855544332    22111 1  1133334444322  


Q ss_pred             -------HHHHHHH-HHHHH-HHHHHhh---ccCchhhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhh
Q 022504           80 -------FLLSVFG-CSSQI-FSFVGIQ---YSSPTLSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIG  147 (296)
Q Consensus        80 -------~~~g~~g-~~~~~-~~~~gl~---~tsa~~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~  147 (296)
                             +.+.+.+ ..... +.+.|+.   +.|+++=.++-.+-..++++++..+..|+++.-      ++.|.++.+.
T Consensus       254 ~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi~  327 (372)
T KOG3912|consen  254 ALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILIM  327 (372)
T ss_pred             HhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHHH
Confidence                   2233333 22222 2344443   447777777878888888999999999998766      5899999999


Q ss_pred             hhhh
Q 022504          148 GAFV  151 (296)
Q Consensus       148 G~~l  151 (296)
                      |+++
T Consensus       328 Gi~l  331 (372)
T KOG3912|consen  328 GIIL  331 (372)
T ss_pred             HHHH
Confidence            9875

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=84.56  E-value=4.9  Score=34.92  Aligned_cols=117  Identities=15%  Similarity=0.195  Sum_probs=81.5

Q ss_pred             HHHHHHh-CCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchh
Q 022504           30 VIKAAMS-KGINKYVIIVYSDALSSLFFLFCSFLFHRSERP----QLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPTL  104 (296)
Q Consensus        30 ~~K~~~~-~~~~p~~~~~~R~~~A~l~l~~~~~~~~r~~~~----~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~~  104 (296)
                      ..|.-.+ .+..-++-.+|..+++.++++.+.+.++.....    ..+...+...++-|+...+...+.-+.++-+++++
T Consensus       173 ~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTt  252 (309)
T COG5070         173 IMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTT  252 (309)
T ss_pred             HHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhH
Confidence            3454433 346778999999999999999888765432211    11222233555556655566667777888899999


Q ss_pred             hhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhh
Q 022504          105 STAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV  152 (296)
Q Consensus       105 asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll  152 (296)
                      -+.+..+.-.-..+.+.++++|+.++.      ++..+.+++...++-
T Consensus       253 ySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~iY  294 (309)
T COG5070         253 YSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIY  294 (309)
T ss_pred             HHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHH
Confidence            998888888888888888999997655      578888887665443

>TIGR00803 nst UDP-galactose transporter

Probab=83.78  E-value=9.6  Score=32.65  Aligned_cols=30  Identities=10%  Similarity=-0.068  Sum_probs=23.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022504          180 SWILGGFFLAAEAFMNSAWFILQALILRKF  209 (296)
Q Consensus       180 ~~~~G~ll~l~aa~~~a~~~v~~k~~~~~~  209 (296)
                      +...|....+.+..+-++..+.+++..|+.
T Consensus        82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~  111 (222)
T TIGR00803        82 NPVVGLSAVLSALLSSGFAGVYFEKILKDG  111 (222)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHcccCC
Confidence            346788888888888888899988886664

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=81.58  E-value=12  Score=33.68  Aligned_cols=183  Identities=13%  Similarity=0.135  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCch-
Q 022504           26 SNMEVIKAAMSKGINK-YVIIVYSDALSSLFFLFCSFLFHRSERPQLTFSILCSFFLLSVFGCSSQIFSFVGIQYSSPT-  103 (296)
Q Consensus        26 ~~~i~~K~~~~~~~~p-~~~~~~R~~~A~l~l~~~~~~~~r~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~gl~~tsa~-  103 (296)
                      ++-++.....+++=+. -.+.+..|++-+.-=+++.-.+.+ .+++.+.|++.....  .+ ...+.+..+++++-=+- 
T Consensus        17 snvv~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~-~k~kiplk~Y~i~V~--mF-F~vnv~NN~al~f~I~~P   92 (330)
T KOG1583|consen   17 SNVVFLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFT-VKPKIPLKDYAITVA--MF-FIVNVTNNYALKFNIPMP   92 (330)
T ss_pred             chHHHHHHHHHhCCCCeeehHHHHHHHHHHhceeeeccccc-cCCCCchhhhheehh--ee-eeeeeeccceeeecccce
Confidence            4556666655432122 234555555444332222111111 125566676443222  11 23345556666665322 


Q ss_pred             hhhhhcchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhccCCCCcCCCCCCCCCCcccCCCCCchhH
Q 022504          104 LSTAMLNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWIL  183 (296)
Q Consensus       104 ~asil~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (296)
                      .=-++=+-.++-++++++++.++|-+.+      |...++..-+|+++-++.++++...  .+++....+......-+..
T Consensus        93 lHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~--~~~~l~~~~~~~~~~~w~i  164 (330)
T KOG1583|consen   93 LHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS--KLSGLDSGSAQSDFFWWLI  164 (330)
T ss_pred             EEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh--hhcccccCcccccchHHHH
Confidence            2223345678889999999988876554      6899999999998887665544322  0111111111122234578


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHH
Q 022504          184 GGFFLAAEAFMNSAWFILQALILRKFA-AVLIIMFYLF  220 (296)
Q Consensus       184 G~ll~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~  220 (296)
                      |..+...+-+.-|...+.|+..-||++ ++-...++.=
T Consensus       165 Gi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH  202 (330)
T KOG1583|consen  165 GIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTH  202 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            999999999999999999999888874 2334445543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.06
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.05

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.06  E-value=3.4e-05  Score=58.51  Aligned_cols=68  Identities=13%  Similarity=0.219  Sum_probs=60.4

Q ss_pred             HHHHHH-HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhh
Q 022504           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF  154 (296)
Q Consensus        81 ~~g~~g-~~~~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~  154 (296)
                      +.+++. ...+.++..++++.+.+.+..+ ..+.|+++.++++++++||++++      |++|+.+.+.|++++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            466666 7888999999999999999888 79999999999999999998776      59999999999988753

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.05  E-value=6.2e-06  Score=65.07  Aligned_cols=69  Identities=13%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             HHHHHH-HHHHHHHHHHhhccCchhhhhh-cchhhHHHHHHHHHHhhcccccccccccchhhhHHHhhhhhhhhhhc
Q 022504           81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFY  155 (296)
Q Consensus        81 ~~g~~g-~~~~~~~~~gl~~tsa~~asil-~~~~Pv~~~ils~~~~~E~~~~~~~~~~~~~iG~~l~~~G~~ll~~~  155 (296)
                      +++++. .+.+.++..++++.+++.+..+ .++.|+++.++++++++|+++++      +++|+.+.++|++++...
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence            566667 8889999999999999999888 89999999999999999999877      599999999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00