Citrus Sinensis ID: 022517

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEVSCFSPFSQSLNHSCLGIYMSGRVLIILNGLVRCRLMLQK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEccccccccccHHHHHHHcHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccEEEEEEccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccccccEEEccccccEEEEEcEEEccHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHcccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccccEEEcccHEEEEEccHHHHHHHHcc
Coil and Loop (DISEMBL)
MDAARKKAIFRAKLNAQkkekrinsplvrynefdqpvcrVCDVvlksdsqwdaHQASRKHHEAIKNikagatgnnsrmvsdaakpeagressrsesrsasqnaEIESSAKLgkartssvlpsnffdsqeakrpktdsvklvdpdsnktsgvsakTQAMKSVVLENemdelpngnavdakkgqplkehpekskqsVDSEAKQIKgalpegffdnkEADLLArgikpvkpdvkDEYKEYEKLIQEDLKQVDDRfeeeevscfspfsqslnhsclgiYMSGRVLIILNGLVRCRLMLQK
Flexible Loop (DISEMBL)
mdaarkkaifraklnaqkkekrinsplvrynefdqpvCRVCDVVLKSDSQWDAHQasrkhheaiknikagatgnnsrmvSDAAkpeagressrsesrsasqnaeiessaklgkartssvlpsnffdsqeakrpktdsvklvdpdsnktsgvsaktqAMKSVVLENEmdelpngnavdakkgqplkehpekskqsvdsEAKQIKGALPEGFFDNKEADLLargikpvkpdvkDEYKEYEKLIQEDLKQVDDRFEEEEvscfspfsqslNHSCLGIYMSGRVLIILNGLVRCRLMLQK
Low Complexity Region (SEG)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPeagressrsesrsasQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEVSCFSPFSQSLNHSCLGIYMSGRVLIILNGLVRCRLMLQK
Disordered region (IsUnstruct)
************************SPLVRYNEFDQPVCRVCDVVLKSD*************************************************************************************************************************************************************************LLARGI**********YKEYEKLIQEDL**V***FEEEEVSCFSPFSQSLNHSCLGIYMSGRVLIILNGLVRCRLM***
Disordered Region (DISOPRED)
****************************RYNEFDQPVCRVCDVVLKSDSQWDAHQASR****************************************************************************************************************************************************************************KDEYK*********************VSCFSPFSQSLNHSCLGIYMSGRVLIILNGLVRCRLMLQ*
Disordered Region (DISEMBL)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQ***********EAIKNIKAGATGNN******************************************SVLPSNFFDS***********KLVD*************QAMKSVVLENEMDELPNGNAVDAKKG******************KQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDD***********PFSQSLNHSCLGIYMSGRVLIILNGLVRCRLMLQK
Disordered Region (DISPRO)
************K*****KEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG**********************************************************************************************************************************QIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEVSCFSPFSQSLNHSCLGIYMSGRVLIILNGLVRCRLMLQK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEVSCFSPFSQSLNHSCLGIYMSGRVLIILNGLVRCRLMLQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
Q6DJ13	357	Zinc finger protein 830 O	yes	no	0.780	0.647	0.255	2e-09
Q8R1N0	363	Zinc finger protein 830 O	yes	no	0.763	0.622	0.284	5e-09
Q63ZM9	356	Zinc finger protein 830 O	N/A	no	0.783	0.651	0.248	2e-08
Q3MHS2	370	Zinc finger protein 830 O	yes	no	0.716	0.572	0.237	1e-06
Q6P0I6	326	Zinc finger protein 830 O	yes	no	0.611	0.555	0.232	0.0002
Q96NB3	372	Zinc finger protein 830 O	yes	no	0.168	0.134	0.34	0.0008

>sp|Q6DJ13|ZN830_XENTR Zinc finger protein 830 OS=Xenopus tropicalis GN=znf830 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 122/278 (43%), Gaps = 47/278 (16%)

Query: 2   DAARKKAI----FRAKLNAQKK----EKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDA 53
           DA +KK +     R  + A+++    +KRI SPL +YN     +C VC++ +KS+  W A
Sbjct: 3   DAGKKKLVQQEELRRLMKAKQRRSCSKKRIESPLAKYNSLGHLLCVVCNIQIKSELLWPA 62

Query: 54  HQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGK 113
           H   ++H E +  +K    G+ + + S + K +      R  S   +Q ++     +   
Sbjct: 63  HILGKQHKEKVAELK----GSKANISSPSNKVQLHHIMKRKGSEPENQESKRIKGTEDQP 118

Query: 114 ARTSSVLPSNFFDSQEAKRPK-----TDSVKLV--------------DPDSNKTSGVSAK 154
               + LP  FF+++E    K       S+KL+                + N+ S    K
Sbjct: 119 TALKTKLPEGFFETEETSSAKHAAEKAPSLKLLAGDYEDDDEVEGEEYENVNEASTSLQK 178

Query: 155 TQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHP---------EKSKQSVDSEAKQIKGA 205
              +      +  D LP  +  ++K   PL  H          EK  +  D+ A+    A
Sbjct: 179 PAEIPLPPPTSSADRLP-ADFFESK--MPLVSHSGSVLKADIQEKIVERKDNTAE----A 231

Query: 206 LPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQE 243
           LPEGFFD+ EAD   R +   K  +  E++E++K I++
Sbjct: 232 LPEGFFDDPEADAKVRKVDAPKDQMDKEWEEFQKEIRQ 269

May act as a regulator of the cell cycle in embryos by participating in control of M phase.
Xenopus tropicalis (taxid: 8364)

>sp|Q8R1N0|ZN830_MOUSE Zinc finger protein 830 OS=Mus musculus GN=Znf830 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 113/260 (43%), Gaps = 34/260 (13%)

Query: 9   IFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68
           + R K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K
Sbjct: 24  LMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELK 83

Query: 69  A--GAT-GNNSRMVSDAAKPEAGR-ESSRSESRSASQNAEIE-----SSAKLGKARTSSV 119
              GAT G ++  V  A K  A   ES  ++   AS   +++     SSA L  AR +  
Sbjct: 84  GAKGATQGPSTGTVPQATKRRATDVESQDAKKAKASAGPQVQPSTSASSANLDAARAAPS 143

Query: 120 LPS-----NFFD-----SQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDE 169
            P      ++ D      +     + DS K + PD+       A  +   S VL N+   
Sbjct: 144 KPGLGLLPDYDDEEEEEEEGGGEERRDSSKHL-PDAQGKEHSLASPRETTSNVLPND--- 199

Query: 170 LP-NGNAVDAKKGQPLKEHP---EKSK--QSVDSEAKQIKGALPEGFFDNKEADLLARGI 223
            P N N   A    PL  H    EK++  + V    +    ALPEGFFD+ E D   R +
Sbjct: 200 -PFNTNPPKA----PLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAKVRKV 254

Query: 224 KPVKPDVKDEYKEYEKLIQE 243
              K  +  E+ E++K +++
Sbjct: 255 DAPKDQMDKEWDEFQKAMRQ 274

Acts as an important regulator of the cell cycle in the preimplantation embryo by controlling different aspects of M phase.

Mus musculus (taxid: 10090)

>sp|Q63ZM9|ZN830_XENLA Zinc finger protein 830 OS=Xenopus laevis GN=znf830 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 113/258 (43%), Gaps = 26/258 (10%)

Query: 7   KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
           + + +AK      +KRI SPL +YN      C VC+ ++KS+  W AH   ++H E +  
Sbjct: 16  RKLMKAKQRESSSKKRIESPLAKYNSLGHLSCVVCNSLIKSELLWPAHILGKQHKEKVAE 75

Query: 67  IKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFD 126
           +K    G  +   S +   E  R + R  S    Q ++    ++   + +++ LP  FF+
Sbjct: 76  LK----GTKATTSSPSNTIEYPRITKRKGSEPEKQESKRTKGSEDHPSASTTKLPEEFFE 131

Query: 127 SQEAKRP-KTDSVKLVDPDSNKTSGVSAKT--------QAMKSVVLENEMDELPNGNAVD 177
            ++        S+KL+  D        A+         +A  S++   E+   P  ++ D
Sbjct: 132 KEKTSSAGNAPSLKLLAGDYEDVDDDDAEEGEEYENAKEASSSLLKPAEIPLPPPTSSAD 191

Query: 178 A------KKGQPLKEHPEKSKQSVDSEAKQIK------GALPEGFFDNKEADLLARGIKP 225
                  +   PL  H   S    D + K ++       ALPEGFFD+ E D   R +  
Sbjct: 192 NLPADFFENKMPLVSH-SGSVLKADIQEKIVERKENTAEALPEGFFDDPEVDAKVRKVDA 250

Query: 226 VKPDVKDEYKEYEKLIQE 243
            K  +  E++E++K I++
Sbjct: 251 PKDQMDKEWEEFQKEIRQ 268

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Xenopus laevis (taxid: 8355)

>sp|Q3MHS2|ZN830_RAT Zinc finger protein 830 OS=Rattus norvegicus GN=Znf830 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 97/257 (37%), Gaps = 45/257 (17%)

Query: 21  KRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVS 80
           KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K GA G      +
Sbjct: 36  KRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELK-GAKGATQGPSA 94

Query: 81  DAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPS------NFFDS-QEAKRP 133
             A     R+++  ES+           AK  KA    V PS      NF  S +EA R 
Sbjct: 95  GTAPQPTKRKTTDVESQ----------DAKKAKASVDQVQPSTSASSANFEKSGKEATRV 144

Query: 134 KTDSVKL-VDPDSNKTSGVSAKTQAMKSVVLENEMDELPNG------------NAVDAKK 180
            +    L + PD  +      + +        +    LP+                +   
Sbjct: 145 ASSKTGLGLLPDYEEEEEEEEEEELGGGEERRDSSKHLPDAQGREHSLASPRETTSNVLP 204

Query: 181 GQPLKEHPEKS--------------KQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPV 226
             P   +P K+               + V    +    ALPEGFFD+ E D   R +   
Sbjct: 205 NDPFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAKVRKVDAP 264

Query: 227 KPDVKDEYKEYEKLIQE 243
           K  +  E+ E++K +++
Sbjct: 265 KDQMDKEWDEFQKAMRQ 281

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Rattus norvegicus (taxid: 10116)

>sp|Q6P0I6|ZN830_DANRE Zinc finger protein 830 OS=Danio rerio GN=znf830 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 81/262 (30%)

Query: 19  KEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRM 78
           ++KR+ SP  RY+   Q +C +CD  +K+   W  H   ++H + ++ +K+     ++  
Sbjct: 31  RQKRVESPFARYSGAGQLMCALCDAPVKNALLWQTHVLGKQHKDKLQELKSRTAPAHTPA 90

Query: 79  V--SDAAKPEAGRESSRSESRSASQNAEIESSAKL------------------------- 111
              + A  P A   SS +  R+A         AKL                         
Sbjct: 91  PAHTPAHTPAAASSSSSTLKRAAEPPPAPGKRAKLQTGAGAGLGLLAGHYDDDDDDEGGA 150

Query: 112 GKARTS----SVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEM 167
           G+ +T+    S LP++FFDS  A  P         P S+  SG  +K +  +S       
Sbjct: 151 GERKTAPPTDSALPADFFDSGPAPAP---------PISH--SGSVSKAEQQES------- 192

Query: 168 DELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVK 227
                            +E PE   +S           LPEGFFD+   D   R +   K
Sbjct: 193 -----------------QEPPENRPES-----------LPEGFFDDPVRDAQVRQVDTPK 224

Query: 228 PDVKDEYKEYEKLIQEDLKQVD 249
             ++ E++E++K    +++QV+
Sbjct: 225 DQLEREWEEFQK----EMRQVN 242

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Danio rerio (taxid: 7955)

>sp|Q96NB3|ZN830_HUMAN Zinc finger protein 830 OS=Homo sapiens GN=ZNF830 PE=1 SV=2

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 21 KRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG 70
          KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  +K  
Sbjct: 36 KRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAELKGA 85

May act as a regulator of the cell cycle in embryos by participating in control of M phase.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
24461854	344	CTV.12 [Citrus trifoliata]	0.864	0.744	0.988	1e-144
356559669	326	PREDICTED: zinc finger protein 830-like	0.834	0.757	0.572	5e-69
224065088	331	predicted protein [Populus trichocarpa]	0.847	0.758	0.565	6e-69
356499554	326	PREDICTED: zinc finger protein 830-like	0.820	0.745	0.571	9e-69
357491925	325	Zinc finger protein [Medicago truncatula	0.844	0.769	0.577	1e-68
388512271	304	unknown [Lotus japonicus]	0.763	0.743	0.554	2e-64
255558696	375	Coiled-coil domain-containing protein, p	0.851	0.672	0.493	2e-63
449460630	305	PREDICTED: zinc finger protein 830-like	0.770	0.747	0.534	1e-60
225443180	328	PREDICTED: zinc finger protein 830-like	0.736	0.664	0.574	1e-59
298204698	398	unnamed protein product [Vitis vinifera]	0.814	0.605	0.532	4e-57

>gi|24461854|gb|AAN62341.1|AF506028_8 CTV.12 [Citrus trifoliata]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/256 (98%), Positives = 254/256 (99%)

Query: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60
           MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH
Sbjct: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60

Query: 61  HEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVL 120
           HEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQN EIESSAKLGKARTSSVL
Sbjct: 61  HEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNVEIESSAKLGKARTSSVL 120

Query: 121 PSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKK 180
           PSNFFDSQE KRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKK
Sbjct: 121 PSNFFDSQEVKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKK 180

Query: 181 GQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKL 240
           GQPLKEHPEKSKQ+VDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKL
Sbjct: 181 GQPLKEHPEKSKQNVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKL 240

Query: 241 IQEDLKQVDDRFEEEE 256
           IQEDLKQVDDRFEEEE
Sbjct: 241 IQEDLKQVDDRFEEEE 256

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559669|ref|XP_003548121.1| PREDICTED: zinc finger protein 830-like [Glycine max]

 Score =  267 bits (682), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 150/262 (57%), Positives = 184/262 (70%), Gaps = 15/262 (5%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKKEKRI SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKAR 115
           H EAI N+KA A G    NN++ V+D++  +A  E S       SQ    E+S  + K +
Sbjct: 61  HREAISNLKANAAGLTQHNNAKPVADSSFSKAKPEHSLD-----SQFKPPEASQLVSKPQ 115

Query: 116 TSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNA 175
           +SSVLP  FFD  ++   KT S  LVD D  + +GVSAK+Q      LE +  +  + N 
Sbjct: 116 SSSVLPPGFFDDSDS--GKTRSEHLVDSDLGRKAGVSAKSQVSN---LEKDKGQFDDNNV 170

Query: 176 VDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYK 235
             +   Q   +  + S ++ D+E +Q+KG LPEGFFDNKEADL ARGIK VKPDVKDEYK
Sbjct: 171 AKSNVSQATTDSRQTSVKTTDTEIQQVKGILPEGFFDNKEADLRARGIKLVKPDVKDEYK 230

Query: 236 EYEKLIQEDLKQVDDRFEEEEV 257
           E+EKLIQEDL++VDDR EEEE+
Sbjct: 231 EFEKLIQEDLQEVDDRLEEEEI 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065088|ref|XP_002301664.1| predicted protein [Populus trichocarpa] gi|222843390|gb|EEE80937.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (681), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 151/267 (56%), Positives = 187/267 (70%), Gaps = 16/267 (5%)

Query: 1   MDAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKH 60
           MDAA+KKA+FR+KLNAQ+KEK+I+SPLVRYNE DQPVCRVCDVVLKS+ QWDAHQASRKH
Sbjct: 1   MDAAKKKALFRSKLNAQRKEKKIDSPLVRYNELDQPVCRVCDVVLKSEFQWDAHQASRKH 60

Query: 61  HEAIKNIKAGATG----NNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKART 116
            EAI NIKA A      NN++     ++P A    S+    +  Q A+ ES  +L   R 
Sbjct: 61  IEAINNIKANAARLKNVNNAK-----SEPSAVSTGSKHADNAQLQVAKSESLTQL--PRP 113

Query: 117 SSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAV 176
            S LP +FFD++EAKR KTD+VK  + DS+     S +T+A +S +LE+E   LP+GN +
Sbjct: 114 QSALPPDFFDNKEAKRQKTDAVKPSELDSSLKPAGSIQTKATRS-LLEDETGGLPSGNHL 172

Query: 177 DAKKGQPLK----EHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKD 232
             K  +  +           +  DS+AKQ +GALPEGFFDNKEADL ARGIKPVKPDV D
Sbjct: 173 QTKNTEDARGITNTPTPTPTEISDSQAKQGQGALPEGFFDNKEADLRARGIKPVKPDVND 232

Query: 233 EYKEYEKLIQEDLKQVDDRFEEEEVSC 259
           EYKE+EKLIQ DL++VDDR EEEEV  
Sbjct: 233 EYKEFEKLIQGDLREVDDRLEEEEVDA 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499554|ref|XP_003518604.1| PREDICTED: zinc finger protein 830-like [Glycine max]

 Score =  266 bits (680), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 152/266 (57%), Positives = 183/266 (68%), Gaps = 23/266 (8%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKK+KRI SPLVRYNEFD PVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKKKRIESPLVRYNEFDLPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNSRMVSDA----AKPEAGRESSRSESRSASQNAEIESSAKL 111
           H EAI N+KA A G    N ++ V+D     AKPE   +         SQ+   E+S  +
Sbjct: 61  HREAISNLKANAAGLTQHNIAKPVADTSFFKAKPEHSLD---------SQSKAPEASQVV 111

Query: 112 GKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELP 171
            K ++SSVLP  FFD  ++   KT S  LVD D  + +GVSA++Q +    LE E     
Sbjct: 112 SKPQSSSVLPPGFFD--DSNSGKTRSEHLVDSDLGRKAGVSAQSQVLN---LEKEKGHFH 166

Query: 172 NGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVK 231
           + NA  +  GQ   E  +   +S D+E +QIKG LPEGFFDNKEADL ARGIK VKPDVK
Sbjct: 167 DNNAAKSNVGQAAMESRQTPVKSTDTEIQQIKGTLPEGFFDNKEADLRARGIKLVKPDVK 226

Query: 232 DEYKEYEKLIQEDLKQVDDRFEEEEV 257
           DEYKE+EKLIQEDL++VDDR EEEE+
Sbjct: 227 DEYKEFEKLIQEDLREVDDRLEEEEI 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491925|ref|XP_003616250.1| Zinc finger protein [Medicago truncatula] gi|355517585|gb|AES99208.1| Zinc finger protein [Medicago truncatula]

 Score =  266 bits (679), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/263 (57%), Positives = 187/263 (71%), Gaps = 13/263 (4%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKK+KRI+SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKDKRIDSPLVRYNEFDQPVCRVCDVVLKSESLWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSV 119
           H EAI N+KA A G   +     AKP+  +  ++ E  S SQ    +S  ++ K ++SSV
Sbjct: 61  HREAITNLKANAAGLTKQ---SNAKPDIPK--AKPEQPSGSQFKIPKSPQEVPKPQSSSV 115

Query: 120 LPSNFFDSQEAKRPKT--DSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELP-NGNAV 176
           LP +FFD+ +AK+ ++  DSV LVD D  +  G SA++    SV    E D    N N  
Sbjct: 116 LPPDFFDNNDAKKTRSEKDSVHLVDSDLGRNMGASAQS----SVSNSKEKDHFHGNNNPT 171

Query: 177 DAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKE 236
            +K  Q   E  + S +++D+E KQ KGALPEGFFDNKEADL ARGIK VKPDVKDEYKE
Sbjct: 172 QSKVNQATVETKQTSVKTIDAEIKQGKGALPEGFFDNKEADLRARGIKLVKPDVKDEYKE 231

Query: 237 YEKLIQEDLKQVDDRFEEEEVSC 259
           +EKLIQEDL++VDDR EEEE+  
Sbjct: 232 FEKLIQEDLQEVDDRMEEEEIDA 254

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512271|gb|AFK44197.1| unknown [Lotus japonicus]

 Score =  252 bits (643), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/265 (55%), Positives = 169/265 (63%), Gaps = 39/265 (14%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A+KKA+FRAKLNAQKKEKRI SPLVRYNEFDQPVCRVCDVVLKS+S WDAHQ SRK
Sbjct: 1   MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCDVVLKSESNWDAHQVSRK 60

Query: 60  HHEAIKNIKAGATG----NNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKAR 115
           H EAI N+KA A G    NN++     AKPE           S SQ    +SS ++ K +
Sbjct: 61  HREAISNLKANAAGLTQNNNAKREITKAKPEQP---------SVSQFKMPQSSQEVPKPQ 111

Query: 116 TSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNA 175
           +SSVLP NFFD                 DS+     S K        LENE       N 
Sbjct: 112 SSSVLPPNFFD-----------------DSHARKASSEKD-------LENEKGNFHANNT 147

Query: 176 VDAK-KGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEY 234
             +K   Q   E  + S ++ D E K +K ALPEGFFDNKEADL ARGIKPV+PD+KDEY
Sbjct: 148 AQSKVSSQAAMETRQTSDKTADKETKPVKEALPEGFFDNKEADLRARGIKPVRPDIKDEY 207

Query: 235 KEYEKLIQEDLKQVDDRFEEEEVSC 259
           KE+EKLIQEDLK+VDDRFEEEE+  
Sbjct: 208 KEFEKLIQEDLKEVDDRFEEEEIDA 232

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558696|ref|XP_002520372.1| Coiled-coil domain-containing protein, putative [Ricinus communis] gi|223540419|gb|EEF41988.1| Coiled-coil domain-containing protein, putative [Ricinus communis]

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 151/306 (49%), Positives = 192/306 (62%), Gaps = 54/306 (17%)

Query: 1   MDAA-RKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDAA +KKA+FRAKLNAQKK+KRI+SPLVRYNE DQPVCR+C+VVLKS+S W AHQASRK
Sbjct: 1   MDAAAKKKALFRAKLNAQKKDKRIDSPLVRYNESDQPVCRICNVVLKSESLWAAHQASRK 60

Query: 60  HHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSR--SESRSASQNAEIESSAKLGKARTS 117
           HHEAI NIK  A      +  ++ KPEA +E++R   E+ +   + + E S +L K ++S
Sbjct: 61  HHEAINNIKNAA----GHLRVNSTKPEAHKENTRPKYENDAELHDTKSEPSTRLTKPQSS 116

Query: 118 SVLPSNFFDSQ-------------------------------------------EAKRPK 134
           SVLP++FFD+                                            EAKR K
Sbjct: 117 SVLPADFFDTHKTETTLPKHAHYVELGDKMPEPSSKSSKHQSSSVLPPNFFDDPEAKRQK 176

Query: 135 TDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQS 194
            D+ K V+ +S+K SG SA T+     +LE+EMD   +GN ++ K     +E       +
Sbjct: 177 IDTAKSVNSNSHKKSGNSAYTKV--ESLLEDEMDG-SSGNDMETKNTGRAREFVHTVDIT 233

Query: 195 VDSE-AKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFE 253
             S   KQ+KGALPEGFFD+KEADL ARGIK VKPDVKDEYKE+EKLIQEDL++VDDR E
Sbjct: 234 GGSRYMKQVKGALPEGFFDDKEADLRARGIKLVKPDVKDEYKEFEKLIQEDLQEVDDRLE 293

Query: 254 EEEVSC 259
           EEE+  
Sbjct: 294 EEEIDA 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460630|ref|XP_004148048.1| PREDICTED: zinc finger protein 830-like [Cucumis sativus] gi|449516880|ref|XP_004165474.1| PREDICTED: zinc finger protein 830-like [Cucumis sativus]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 140/262 (53%), Positives = 178/262 (67%), Gaps = 34/262 (12%)

Query: 1   MDA-ARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRK 59
           MDA A++KA+FRAKLNAQKK+KRI+SPLVRYNE DQPVCRVCD+VLKS++ WDAHQ+SR+
Sbjct: 1   MDAQAKRKALFRAKLNAQKKDKRIDSPLVRYNELDQPVCRVCDMVLKSEAYWDAHQSSRR 60

Query: 60  HHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIE--SSAKLGKARTS 117
           HHEAI+N+KA A G   R   +  K EA  E   +    + +  E+   +S++L K  +S
Sbjct: 61  HHEAIQNLKASAAG---RSGVENIKAEAPAELPNNRPIDSKEKKEMTGGTSSELPKRPSS 117

Query: 118 SVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVD 177
           SVLPS+FFD Q AKR KT      D +++  SG  A++Q             +P  + ++
Sbjct: 118 SVLPSDFFD-QNAKRLKTGK----DIETDSRSGSIAQSQV------------IPKASDLN 160

Query: 178 AKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEY 237
                      +KS  +  SE KQIKGALPEGFFD+KEADL A GIK VKPDVKDEYKE+
Sbjct: 161 -----------KKSSMNAGSEGKQIKGALPEGFFDDKEADLRAHGIKLVKPDVKDEYKEF 209

Query: 238 EKLIQEDLKQVDDRFEEEEVSC 259
           EKLIQEDL++VDDR EEEE+  
Sbjct: 210 EKLIQEDLQEVDDRLEEEEIDA 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443180|ref|XP_002267521.1| PREDICTED: zinc finger protein 830-like [Vitis vinifera]

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 135/235 (57%), Positives = 166/235 (70%), Gaps = 17/235 (7%)

Query: 30  YNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSDAAKPEAGR 89
           YNEFDQPVCRVCDV+LKS+S WDAHQASRKHHEAIKN+KA A G      ++ AKPEA  
Sbjct: 27  YNEFDQPVCRVCDVILKSESLWDAHQASRKHHEAIKNVKANAAG---LTRANNAKPEA-- 81

Query: 90  ESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKT--DSVKLVDPDS-N 146
              + ES +   NA  E S  L KA+ SS LP++FFD+   K+ K+  D VK +DPDS N
Sbjct: 82  --PKPESSTVLSNATSEPSMNLQKAQLSSGLPADFFDNHVTKKQKSGNDDVKFLDPDSYN 139

Query: 147 KTSG-VSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQS----VDSEAKQ 201
           KT G  SA+TQ+M+ +  +N +D L + ++   K G+    H     Q+    V SE K+
Sbjct: 140 KTGGSASAQTQSMEPLESKNNLDGLSSSHS--EKMGKSGIRHARDLTQTSGKIVGSETKE 197

Query: 202 IKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEE 256
           +KGALPEGFFDNK+ADL ARGI PVKPDVKDEYKE+EKLIQEDLK+VD+R EEEE
Sbjct: 198 VKGALPEGFFDNKDADLRARGIVPVKPDVKDEYKEFEKLIQEDLKEVDNRLEEEE 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204698|emb|CBI25196.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (580), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 139/261 (53%), Positives = 174/261 (66%), Gaps = 20/261 (7%)

Query: 1   MDA-ARKKAIFRAKLN--AQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQAS 57
           MDA ARKKA++RAKL    +KK KRI SPLVRYNEFDQPVCRVCDV+LKS+S WDAHQAS
Sbjct: 1   MDAQARKKALYRAKLKNLEEKKVKRIESPLVRYNEFDQPVCRVCDVILKSESLWDAHQAS 60

Query: 58  RKHHEAIKNIKAGATGNNSRMVSDAAKPEAGRESSRSESRSASQNAEIESSAKLGKARTS 117
           RKHHEAIKN+KA A G      ++ AKPEA     + ES +   NA  E S  L KA+ S
Sbjct: 61  RKHHEAIKNVKANAAGLTR---ANNAKPEA----PKPESSTVLSNATSEPSMNLQKAQLS 113

Query: 118 SVLPSNFFDSQEAKRPKT--DSVKLVDPDS-NKTSG-VSAKTQAMKSVVLENEMDELPNG 173
           S LP++FFD+   K+ K+  D+VK +DPDS NKT G  SA+TQ+M+ +  +N +D L + 
Sbjct: 114 SGLPADFFDNHVTKKQKSGNDAVKFLDPDSYNKTGGSASAQTQSMEPLESKNNLDRLSSS 173

Query: 174 NAVDAKKGQPLKEHPEKSKQS----VDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPD 229
           ++   K G+    H     Q+    V SE K++KGALPEGFFDNK+ADL ARGI PVKPD
Sbjct: 174 HS--EKMGKSGIHHARDLTQTSGKIVGSETKEVKGALPEGFFDNKDADLRARGIVPVKPD 231

Query: 230 VKDEYKEYEKLIQEDLKQVDD 250
           VK      EK+ +  +    D
Sbjct: 232 VKLSSSHSEKMGKSGIHHARD 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
TAIR|locus:2075422	313	AT3G02860 [Arabidopsis thalian	0.503	0.476	0.432	1.9e-26
MGI|MGI:1914233	363	Zfp830 "zinc finger protein 83	0.834	0.680	0.25	9.9e-13
UNIPROTKB|E2RNS2	371	ZNF830 "Uncharacterized protei	0.381	0.304	0.268	3.2e-11
UNIPROTKB|Q96NB3	372	ZNF830 "Zinc finger protein 83	0.256	0.204	0.263	4.2e-10
UNIPROTKB|I3L6H7	367	ZNF830 "Uncharacterized protei	0.216	0.174	0.307	1.2e-09
ZFIN|ZDB-GENE-040426-1834	326	zgc:77398 "zgc:77398" [Danio r	0.746	0.677	0.196	9.8e-06
UNIPROTKB|A3KN01	373	ZNF830 "Uncharacterized protei	0.783	0.621	0.223	1.3e-05
RGD|1562573	370	Zfp830 "zinc finger protein 83	0.574	0.459	0.235	3.6e-05
UNIPROTKB|F1NPL1	368	ZNF830 "Uncharacterized protei	0.560	0.451	0.238	0.0001

TAIR|locus:2075422 AT3G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 67/155 (43%), Positives = 93/155 (60%)

Query:   104 EIESSAKLGKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVL 163
             +IE+ AK   ++TSS LP NFF+++E  R + +  K  + + +K + + ++T   K  + 
Sbjct:    88 KIEALAKSSNSQTSSGLPPNFFENREPARAEVEPAKSKNLEQSKHT-IGSETNKSKGPLP 146

Query:   164 ENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAK-QIKGALPEGFFDNKEADLLARG 222
                 D        D+   +   E  +   Q+   E K  + G LP GFFDNKEADLLA G
Sbjct:   147 AGFFDN----QKTDSSNTKTTSEPKQSQTQTTGPETKPMVNGNLPTGFFDNKEADLLAHG 202

Query:   223 IKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEEV 257
             IK VKPD+KDEYKE+EKLIQ+DL+ VD R EEEEV
Sbjct:   203 IKLVKPDIKDEYKEFEKLIQDDLQVVDSRMEEEEV 237

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1914233 Zfp830 "zinc finger protein 830" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 9.9e-13, P = 9.9e-13
 Identities = 67/268 (25%), Positives = 106/268 (39%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + R K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMREKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query:    67 IKA--GAT-GNNSRMVSDAAKPXXXXXXXXXXXXXXX------QNAEIESSAKLGKARTS 117
             +K   GAT G ++  V  A K                      Q +   SSA L  AR +
Sbjct:    82 LKGAKGATQGPSTGTVPQATKRRATDVESQDAKKAKASAGPQVQPSTSASSANLDAARAA 141

Query:   118 SVLPS----NFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNG 173
                P       +D +E +  +    +  D  S        K  ++ S   E   + LPN 
Sbjct:   142 PSKPGLGLLPDYDDEEEEEEEGGGEERRD-SSKHLPDAQGKEHSLASP-RETTSNVLPND 199

Query:   174 NAVDAKKGQPLKEHP---EKSK--QSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKP 228
                      PL  H    EK++  + V    +    ALPEGFFD+ E D   R +   K 
Sbjct:   200 PFNTNPPKAPLVPHSGSIEKAEIHEKVVERRENTAEALPEGFFDDPEVDAKVRKVDAPKD 259

Query:   229 DVKDEYKEYEKLIQEDLKQVDDRFEEEE 256
              +  E+ E++K +++ +  + +    EE
Sbjct:   260 QMDKEWDEFQKAMRQ-VNTISEAIVAEE 286

GO:0000077 "DNA damage checkpoint" evidence=IMP

GO:0001832 "blastocyst growth" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005694 "chromosome" evidence=IEA

GO:0007049 "cell cycle" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016607 "nuclear speck" evidence=IDA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0060729 "intestinal epithelial structure maintenance" evidence=IMP

UNIPROTKB|E2RNS2 ZNF830 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 32/119 (26%), Positives = 54/119 (45%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESSAKLGKARTS-SVLPSNF 124
             +K GA    ++  S +A P               Q+A+   ++ L + + S S LP+NF
Sbjct:    82 LK-GAR-EATQGPSSSAAPQSAKRKVPDADG---QDAKRLKASPLPQVQPSTSALPTNF 135

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

UNIPROTKB|Q96NB3 ZNF830 "Zinc finger protein 830" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 20/76 (26%), Positives = 33/76 (43%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTSRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNSRMVSDA 82
             +K     +     S A
Sbjct:    82 LKGAKEASQGSSASSA 97

GO:0007067 "mitosis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|I3L6H7 ZNF830 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 110 (43.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 20/65 (30%), Positives = 32/65 (49%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGA 71
             +K GA
Sbjct:    82 LK-GA 85

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

ZFIN|ZDB-GENE-040426-1834 zgc:77398 "zgc:77398" [Danio rerio (taxid:7955)]

 Score = 128 (50.1 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 47/239 (19%), Positives = 94/239 (39%)

Query:    19 KEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRM 78
             ++KR+ SP  RY+   Q +C +CD  +K+   W  H   ++H + ++ +K+     ++  
Sbjct:    31 RQKRVESPFARYSGAGQLMCALCDAPVKNALLWQTHVLGKQHKDKLQELKSRTAPAHTP- 89

Query:    79 VSDAAKPXXXXXXXXXXXXXXXQNAEIESS-AKLGKARTSSVLPSNFFDSQEAKRPKTDS 137
              + A  P               + AE   +  K  K +T +                 D 
Sbjct:    90 -APAHTPAHTPAAASSSSSTLKRAAEPPPAPGKRAKLQTGAGAGLGLLAGHY------DD 142

Query:   138 VKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDS 197
                 D D    +G         S +  +  D  P      +  G   K   ++S++  ++
Sbjct:   143 ----DDDDEGGAGERKTAPPTDSALPADFFDSGPAPAPPISHSGSVSKAEQQESQEPPEN 198

Query:   198 EAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLIQEDLKQVDDRFEEEE 256
               +    +LPEGFFD+   D   R +   K  ++ E++E++K +++ +    D    E+
Sbjct:   199 RPE----SLPEGFFDDPVRDAQVRQVDTPKDQLEREWEEFQKEMRQ-VNSASDAIVAED 252

GO:0046872 "metal ion binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

UNIPROTKB|A3KN01 ZNF830 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 57/255 (22%), Positives = 104/255 (40%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAE 81

Query:    67 IKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESSAKLGKARTS-SVLPSNFF 125
             +K GA    ++  S +A P               Q+A+   ++ + + + S S LP+NF 
Sbjct:    82 LK-GAK-EAAQGPSASAVPQSTKRKAPDSES---QDAKRAKASLVPQVQPSTSALPTNF- 135

Query:   126 DSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQPLK 185
                +A +  T +         K SG+            E+E +E   G     K     +
Sbjct:   136 --DKAGKESTRATV------GKASGLGLLPDYDDE---EDEEEEKGGGGGEGKKGDACKQ 184

Query:   186 EHPEKSKQSVDSEAKQIKGA-LPEGFFDNK--EADLLARGIKPVKPDVKDEYKEYEKLIQ 242
                 +SK+   S +++  G+ LP  F D    +A L+       K ++ ++  E  +   
Sbjct:   185 PSTSQSKEHSLSSSREATGSRLPSNFSDTNPPKAPLIPHSGSIEKAEIHEKVVERRENTA 244

Query:   243 EDLKQVDDRFEEEEV 257
             E L +    F++ E+
Sbjct:   245 EALPE--GFFDDPEI 257

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

RGD|1562573 Zfp830 "zinc finger protein 830" [Rattus norvegicus (taxid:10116)]

 Score = 124 (48.7 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 45/191 (23%), Positives = 74/191 (38%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN 66
             + + + K       KRI SP  +YN   Q  C +C+  +KS+  W  H   ++H E +  
Sbjct:    22 RRLMKEKQRLSTNRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAE 81

Query:    67 IKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESS-AKLGKARTSSVLPSNFF 125
             +K             A +P               +  ++ES  AK  KA    V PS   
Sbjct:    82 LKGAKGATQGPSAGTAPQPTKR------------KTTDVESQDAKKAKASVDQVQPSTSA 129

Query:   126 DSQEAKRPKTDSVKLVDPDSNKTS-GVSAKTQAMKSVVLENEMDELPNGNAV-DAKKGQP 183
              S   ++   ++ ++    S+KT  G+    +  +    E E +EL  G    D+ K  P
Sbjct:   130 SSANFEKSGKEATRVA---SSKTGLGLLPDYEEEEE---EEEEEELGGGEERRDSSKHLP 183

Query:   184 LKEHPEKSKQS 194
               +  E S  S
Sbjct:   184 DAQGREHSLAS 194

GO:0000077 "DNA damage checkpoint" evidence=ISO

GO:0001832 "blastocyst growth" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0007049 "cell cycle" evidence=ISO

GO:0007067 "mitosis" evidence=IEA;ISO

GO:0016607 "nuclear speck" evidence=ISO

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0060729 "intestinal epithelial structure maintenance" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1NPL1 ZNF830 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
 Identities = 43/180 (23%), Positives = 69/180 (38%)

Query:     7 KAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAI-- 64
             + + R K      +KRI SP  +Y       C +C   +KS+  W  H   ++H E +  
Sbjct:    22 RRLMREKKRQNADKKRIESPFAKYPRLGHLSCTLCSAPVKSELLWQTHVLGKQHRERVAE 81

Query:    65 -KNIKAGATGNNSRMVSDAAKPXXXXXXXXXXXXXXXQNAEIESSAKLGKARTSSVLPSN 123
              K  K  A+G+ +   S A K                 + +  +S       ++S LP++
Sbjct:    82 LKGAKQAASGSAAGASSHAVKRKTADAESTQLKRSKGTDDKPHTST------STSGLPAD 135

Query:   124 FFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSVVLENEMDELPNGNAVDAKKGQP 183
             FFD  E        +K   P  +  SG        +    E E D+ PN ++V  K   P
Sbjct:   136 FFDESEQNNANKQFLK--GPGPSLLSGNYDDDDEEEEE--EEEQDQ-PNTSSVMHKTEIP 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.128   0.353    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      296       281   0.00083  115 3  11 23  0.44    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  190 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.03u 0.09s 30.12t   Elapsed:  00:00:02
  Total cpu time:  30.03u 0.09s 30.12t   Elapsed:  00:00:02
  Start:  Fri May 10 03:42:47 2013   End:  Fri May 10 03:42:49 2013

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001832 "blastocyst growth" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00002209 hypothetical protein (331 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	296
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	2e-05
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	0.002

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 38 CRVCDVVLKSDSQWDAHQASRKH 60
          C +C+V   S+SQ  +H   +KH
Sbjct: 3  CELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 35 QPVCRVCDVVLKSDSQWDAHQASRKH 60
          Q  C  CD   KS++  + H  S+KH
Sbjct: 1  QFYCVACDKYFKSENALENHLKSKKH 26

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
KOG3032	264	consensus Uncharacterized conserved protein [Funct	100.0
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	97.98
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.56
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	97.02
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	96.68
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	95.87
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	94.96
PLN02748	468	tRNA dimethylallyltransferase	94.84
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	89.56
KOG4727	193	consensus U1-like Zn-finger protein [General funct	88.51
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	87.18

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.8e-45  Score=336.04  Aligned_cols=198  Identities=41%  Similarity=0.651  Sum_probs=150.3

Q ss_pred             cHHHHHHHHHHHHHHHHhhhccCCCccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhhccCCCCCCCCcc
Q 022517            2 DAARKKAIFRAKLNAQKKEKRINSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGATGNNSRMVSD   81 (296)
Q Consensus         2 daa~~ka~~Rallrqqr~~krI~~P~A~Y~~~GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK~~~~~~~~~~~~~   81 (296)
                      ..+++|++||++|+..+...||++|||+||++|||+|+|||++|| ++||++|++||+||++|+.||.......      
T Consensus         2 nq~~~krl~k~k~~~kk~~~ri~splakyn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs~~~Kv~------   74 (264)
T KOG3032|consen    2 NQAKKKRLFKSKLNAKKKDTRIDSPLAKYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKSRGSKVA------   74 (264)
T ss_pred             chHHHHHHHHHHhhccCcccccccHhhccCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHhhhcccc------
Confidence            348999999999999999999999999999999999999999999 8999999999999999999994322211      


Q ss_pred             CCCCCCCCCCCCCCCCccchhhhhhhhhhcccCCCCCCCCCcccCcccccCCCCCCccccCCCCCcccCCcccccccccc
Q 022517           82 AAKPEAGRESSRSESRSASQNAEIESSAKLGKARTSSVLPSNFFDSQEAKRPKTDSVKLVDPDSNKTSGVSAKTQAMKSV  161 (296)
Q Consensus        82 ~a~~~~~s~krk~~~~~~~~~K~~k~s~~~~~~q~sS~LP~dFFD~~~~~~~~~~~l~lld~d~~~~s~~~~~t~~~~~~  161 (296)
                        .+   ++.+.+..+.+...|..-.     +.+.+|.||++||+....+- ...       |++.              
T Consensus        75 --k~---~~T~~p~~p~spn~kts~~-----pnk~pstlPdk~~~~eqekh-~~g-------d~e~--------------  122 (264)
T KOG3032|consen   75 --KT---RPTKIPALPKSPNSKTSFF-----PNKEPSTLPDKSKNLEQEKH-TIG-------DEEN--------------  122 (264)
T ss_pred             --cC---cCccCccCCCCCCcccccc-----CCCCCCcCCCCCcchhcccC-CCC-------ccch--------------
Confidence              11   1234444443333332211     23356999999987543221 000       0000              


Q ss_pred             cccccccCCCCCCccccCCCCCCCCCCccccccchhhHhhhhcCCCCCCCCCHHhhhhhhcCCCCCcchHHHHHHHHHHH
Q 022517          162 VLENEMDELPNGNAVDAKKGQPLKEHPEKSKQSVDSEAKQIKGALPEGFFDNKEADLLARGIKPVKPDVKDEYKEYEKLI  241 (296)
Q Consensus       162 p~e~~k~~LP~d~f~~~~~~~~~~e~s~s~~ka~~~E~k~~~~~LPeGFFDD~~~DakaR~v~~~k~~~~~E~~eFqkeI  241 (296)
                          .+.    ++|++++                  ++..+.++||+|||||++.|++||||..++++|++||++||++|
T Consensus       123 ----kaq----Gnfs~~p------------------enent~e~lPegFFDdke~d~~vr~~~e~k~~~d~Ey~rfqkeI  176 (264)
T KOG3032|consen  123 ----KAQ----GNFSNQP------------------ENENTNENLPEGFFDDKEADLLVRGIKEVKPDIDDEYKRFQKEI  176 (264)
T ss_pred             ----hcc----ccccCCc------------------cccchhhcCcccccCchhhhhhhhhccccchhHHHHHHHHHHHH
Confidence                011    1233222                  34568999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhccccCccc
Q 022517          242 QEDLKQVDDRFEEEEVSCFSPFS  264 (296)
Q Consensus       242 ~E~~~e~d~r~EEeE~~a~~~~~  264 (296)
                      +++++++|.+.||||+|++.-++
T Consensus       177 ~~~~tesd~iveEeeed~~l~re  199 (264)
T KOG3032|consen  177 QDDLTESDSIVEEEEEDAALTRE  199 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986653

>smart00451 ZnF_U1 U1-like zinc finger

Probab=97.98  E-value=4.1e-06  Score=54.47  Aligned_cols=33  Identities=24%  Similarity=0.590  Sum_probs=30.9

Q ss_pred             CCceeecccccccCcchhHHhhCChHHHHHHHH
Q 022517           34 DQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKN   66 (296)
Q Consensus        34 GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~   66 (296)
                      |...|.+|+..+.++..|..|+.|++|+.++++
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            678999999999999999999999999999975

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.56  E-value=3e-05  Score=48.82  Aligned_cols=27  Identities=37%  Similarity=0.642  Sum_probs=25.0

Q ss_pred             CceeecccccccCcchhHHhhCChHHH
Q 022517           35 QPVCRVCDVVLKSDSQWDAHQASRKHH   61 (296)
Q Consensus        35 qL~C~lCn~~VKsEslW~aHv~Sk~Hr   61 (296)
                      |..|.+|+...++|..|..|+.|++||
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            468999999999999999999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.00036  Score=70.63  Aligned_cols=36  Identities=31%  Similarity=0.601  Sum_probs=34.1

Q ss_pred             CceeecccccccCcchhHHhhCChHHHHHHHHHhhc
Q 022517           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAG   70 (296)
Q Consensus        35 qL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK~~   70 (296)
                      +|.|.+||...|+|..|.-|.+||+|+++|+.|++.
T Consensus       292 ~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqe  327 (508)
T KOG0717|consen  292 VLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQE  327 (508)
T ss_pred             ceEEeeccccccchHHHHhhHHHHHHHHHHHHHHHH
Confidence            399999999999999999999999999999999864

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=96.68  E-value=0.00088  Score=40.76  Aligned_cols=25  Identities=28%  Similarity=0.603  Sum_probs=23.7

Q ss_pred             ceeecccccccCcchhHHhhCChHH
Q 022517           36 PVCRVCDVVLKSDSQWDAHQASRKH   60 (296)
Q Consensus        36 L~C~lCn~~VKsEslW~aHv~Sk~H   60 (296)
                      ..|.+|++...++..|..|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            3699999999999999999999998

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=95.87  E-value=0.011  Score=54.24  Aligned_cols=50  Identities=18%  Similarity=0.386  Sum_probs=43.9

Q ss_pred             cCCCccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhhccC
Q 022517           23 INSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKAGAT   72 (296)
Q Consensus        23 I~~P~A~Y~~~GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK~~~~   72 (296)
                      -+.||..-|.+|++.|.||+..--+|+-.-.|..+|+|++|+.+-...+.
T Consensus        41 ~dDPyl~knh~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~eks   90 (222)
T COG5246          41 MDDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSEEKS   90 (222)
T ss_pred             ccCcchhhcCCCcEEeeeeccccccHHHHHHhhccchhhhhHHHHHHHhh
Confidence            45699999999999999999988889999999999999999998644433

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=94.96  E-value=0.027  Score=52.03  Aligned_cols=45  Identities=18%  Similarity=0.428  Sum_probs=40.9

Q ss_pred             CCCccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 022517           24 NSPLVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (296)
Q Consensus        24 ~~P~A~Y~~~GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK   68 (296)
                      +.||---|-.|.+.|.||+.--.+|.-.-+|.-||+|.+||++--
T Consensus        42 kDPy~mkNh~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarra   86 (222)
T KOG0227|consen   42 KDPYFMKNHLGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRA   86 (222)
T ss_pred             cCchhhhccCcceeehhhhhhhcchhhhhhhhccchhhHHHHHHH
Confidence            358888899999999999999889999999999999999999843

>PLN02748 tRNA dimethylallyltransferase

Probab=94.84  E-value=0.017  Score=58.55  Aligned_cols=39  Identities=31%  Similarity=0.711  Sum_probs=33.5

Q ss_pred             CCceeecccc-cccCcchhHHhhCChHHHHHHHHHhhccC
Q 022517           34 DQPVCRVCDV-VLKSDSQWDAHQASRKHHEAIKNIKAGAT   72 (296)
Q Consensus        34 GqL~C~lCn~-~VKsEslW~aHv~Sk~Hre~v~~lK~~~~   72 (296)
                      -+-+|-+|+. .+..|--|..|+.|+.||.++.++++.+.
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~~~  456 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQKQT  456 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhhhh
Confidence            3447999997 78889999999999999999999876444

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.56  E-value=0.27  Score=33.96  Aligned_cols=30  Identities=33%  Similarity=0.572  Sum_probs=19.2

Q ss_pred             eeecccccccCcc--hhHHhhCChHHHHHHHH
Q 022517           37 VCRVCDVVLKSDS--QWDAHQASRKHHEAIKN   66 (296)
Q Consensus        37 ~C~lCn~~VKsEs--lW~aHv~Sk~Hre~v~~   66 (296)
                      -|-.|++-|.+.+  .|..|..|.+|++|+.+
T Consensus         5 yCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    5 YCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             ecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            5889999995444  89999999999999976

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=88.51  E-value=0.55  Score=42.90  Aligned_cols=42  Identities=21%  Similarity=0.331  Sum_probs=34.7

Q ss_pred             ccccCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 022517           27 LVRYNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (296)
Q Consensus        27 ~A~Y~~~GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK   68 (296)
                      -+.-+..|..-|-||+.+||.-.-+--|+|+|.|.-|+..+-
T Consensus        67 ~tp~sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgmsm  108 (193)
T KOG4727|consen   67 STPRSQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMSM  108 (193)
T ss_pred             CCcccccCceeeeecceeehhhHHHHHHhccHHHHHHHhhhh
Confidence            334467788999999999997666888999999999998743

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=87.18  E-value=0.3  Score=42.30  Aligned_cols=38  Identities=16%  Similarity=0.284  Sum_probs=35.2

Q ss_pred             CCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 022517           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (296)
Q Consensus        32 ~~GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK~   69 (296)
                      -.||--|+.|....=+++.-..|..+|.||-+|..|+.
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            67999999999988889999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.62
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	94.78
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.71
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.18
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	85.26

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.62  E-value=0.0012  Score=54.03  Aligned_cols=37  Identities=19%  Similarity=0.377  Sum_probs=34.1

Q ss_pred             CCCCceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 022517           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (296)
Q Consensus        32 ~~GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK   68 (296)
                      ..+.+.|.+|++.+.++..+..|++||+|+.++.+++
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence            5678899999999999999999999999999998764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=94.78  E-value=0.014  Score=48.61  Aligned_cols=39  Identities=15%  Similarity=0.297  Sum_probs=36.0

Q ss_pred             CCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 022517           31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (296)
Q Consensus        31 ~~~GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK~   69 (296)
                      +..++..|..|+....+++.+..|.+||.|+.++..|+.
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            356899999999999999999999999999999999974

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.71  E-value=0.013  Score=57.06  Aligned_cols=36  Identities=28%  Similarity=0.564  Sum_probs=31.6

Q ss_pred             Cceeecccc------cccCcchhHHhhCChHHHHHHHHHhhc
Q 022517           35 QPVCRVCDV------VLKSDSQWDAHQASRKHHEAIKNIKAG   70 (296)
Q Consensus        35 qL~C~lCn~------~VKsEslW~aHv~Sk~Hre~v~~lK~~   70 (296)
                      +-+|-+|+.      .+-.|.-|..|+.|+.||.++.+.++.
T Consensus       360 ~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~  401 (409)
T 3eph_A          360 HYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ  401 (409)
T ss_dssp             EEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred             ceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence            458999997      677889999999999999999987764

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.18  E-value=0.02  Score=46.69  Aligned_cols=35  Identities=43%  Similarity=0.624  Sum_probs=32.4

Q ss_pred             CceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 022517           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (296)
Q Consensus        35 qL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK~   69 (296)
                      .+.|.+|++.+.+++.-..|..|+.|+.+|..+..
T Consensus        32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            48999999999999999999999999999987654

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=85.26  E-value=0.47  Score=36.69  Aligned_cols=32  Identities=38%  Similarity=0.623  Sum_probs=27.0

Q ss_pred             ceeecccccccCc--chhHHhhCChHHHHHHHHH
Q 022517           36 PVCRVCDVVLKSD--SQWDAHQASRKHHEAIKNI   67 (296)
Q Consensus        36 L~C~lCn~~VKsE--slW~aHv~Sk~Hre~v~~l   67 (296)
                      --|--|++-|...  +.|..|++|++|+.|+...
T Consensus         4 YyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             cccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            4599999999544  5689999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1zr9a1	67	g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593	0.002

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 6/36 (16%), Positives = 11/36 (30%)

Query: 33 FDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68
               C  C       +    H  S+ H + +K + 
Sbjct: 13 GGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLS 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.73
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	93.09
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	90.38

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=6.3e-06  Score=60.70  Aligned_cols=38  Identities=16%  Similarity=0.313  Sum_probs=35.9

Q ss_pred             CCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 022517           32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA   69 (296)
Q Consensus        32 ~~GqL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK~   69 (296)
                      ..||.-|++|+...+++..|..|..||+||.+|.+|+.
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             CCCEEecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            36999999999999999999999999999999999975

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=93.09  E-value=0.023  Score=39.96  Aligned_cols=33  Identities=18%  Similarity=0.422  Sum_probs=29.9

Q ss_pred             CceeecccccccCcchhHHhhCChHHHHHHHHH
Q 022517           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNI   67 (296)
Q Consensus        35 qL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~l   67 (296)
                      .-.|.|||+..-+..+=..|..||.|+.++..-
T Consensus        21 nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          21 SKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHh
Confidence            448999999999999999999999999998754

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=90.38  E-value=0.06  Score=39.49  Aligned_cols=34  Identities=41%  Similarity=0.619  Sum_probs=31.3

Q ss_pred             CceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 022517           35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK   68 (296)
Q Consensus        35 qL~C~lCn~~VKsEslW~aHv~Sk~Hre~v~~lK   68 (296)
                      ...|-+|+.++-+||---+|--|++|..+|..+-
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf   65 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999998753