Citrus Sinensis ID: 022519


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccHHHHHHHHHHHHccEEEEEEccEEEEEccccccEEEEcccccccEEEEEEcccccccccccccccEEEEEcccccHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHHcccccccEEcccccccHHHHHHHHHHHHHccccEEEEEEccccccccccEEccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEEEEEEEcccccccHHHHHHHHHHccccEEEEEccEEEEEccccccEEEEccccccccEEEEEcccccccHHHHccccEEEEEccccHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHccHHHHHHHHccccEEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccEEEEEcccccEEEccccEEEEEEEc
MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVArneskgeperLRYYVRFSyytagtggagpTILATSFLLLGEEvvaynkgeeitlepysgmlsvdfgkgigrkdvfllnlpevrsarevlgvptvsarfgtapffwnwgmvtmqrlfpaeylrdRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDlectdgrntvgifshrrlSVSVGTAIAAFVLAVLEgatqpgvwfpeepegIAIEAREVLLKRASqgtinfvmnkapwmvetepkelglgiyi
MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRvarneskgeperLRYYVRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVrsarevlgvptvsarFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTinfvmnkapwmvetepkelglgiyi
MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSyytagtggagPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
****QFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARN******ERLRYYVRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEP*ELGLG***
****QFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELV***********ERLRYYVRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
*RLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRLQQFLKLDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMVTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEPKELGLGIYI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query296
359479459 422 PREDICTED: uncharacterized protein LOC10 0.854 0.599 0.828 1e-125
449444893 416 PREDICTED: uncharacterized protein LOC10 0.854 0.608 0.832 1e-124
325461580 430 putative astaxanthin synthase [Carica pa 0.854 0.588 0.832 1e-124
224106217 431 predicted protein [Populus trichocarpa] 0.854 0.587 0.809 1e-123
255544942 422 conserved hypothetical protein [Ricinus 0.854 0.599 0.813 1e-122
164521187396 unknown, partial [Nuphar advena] 0.854 0.638 0.801 1e-119
357474051 420 Saccharopine dehydrogenase family protei 0.851 0.6 0.790 1e-119
356543827 429 PREDICTED: uncharacterized protein LOC10 0.851 0.587 0.805 1e-118
356538501 429 PREDICTED: uncharacterized protein LOC10 0.851 0.587 0.774 1e-115
18403077 428 Saccharopine dehydrogenase [Arabidopsis 0.817 0.565 0.772 1e-111
>gi|359479459|ref|XP_002274681.2| PREDICTED: uncharacterized protein LOC100251769 [Vitis vinifera] gi|297734956|emb|CBI17190.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/257 (82%), Positives = 239/257 (92%), Gaps = 4/257 (1%)

Query: 40  TVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAGPTILATSFLLLGEEVVAYNKG 99
            VMAAELVRVAR+ES+G+PERLR+Y    YYTAGTGGAGPTILATSFLLLGEEVVAYNKG
Sbjct: 170 NVMAAELVRVARSESQGKPERLRFY----YYTAGTGGAGPTILATSFLLLGEEVVAYNKG 225

Query: 100 EEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGM 159
           E+I L+PYSGML++DFGKGIG++DV+LL+LPEVRSA E+LGVPTVSARFGTAPFFWNWGM
Sbjct: 226 EKIKLKPYSGMLNIDFGKGIGKRDVYLLHLPEVRSAHEILGVPTVSARFGTAPFFWNWGM 285

Query: 160 VTMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSH 219
             M  L P E+LRDRSKVQ+LVQLFDP+VRA DGIAGERVSMRVDLEC+DGRNTVG+FSH
Sbjct: 286 EAMTNLLPVEFLRDRSKVQELVQLFDPIVRAMDGIAGERVSMRVDLECSDGRNTVGLFSH 345

Query: 220 RRLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKA 279
           RRLSVSVG A AAF LAVLEG+TQPGVWFPEEPEGIAI+AR++LLKRA+QGTINF+MNK 
Sbjct: 346 RRLSVSVGFATAAFALAVLEGSTQPGVWFPEEPEGIAIDARDILLKRAAQGTINFIMNKP 405

Query: 280 PWMVETEPKELGLGIYI 296
           PWMVET+PKELGLGIY+
Sbjct: 406 PWMVETDPKELGLGIYV 422




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444893|ref|XP_004140208.1| PREDICTED: uncharacterized protein LOC101209190 [Cucumis sativus] gi|449482525|ref|XP_004156312.1| PREDICTED: uncharacterized LOC101209190 [Cucumis sativus] Back     alignment and taxonomy information
>gi|325461580|gb|ADZ14892.1| putative astaxanthin synthase [Carica papaya] Back     alignment and taxonomy information
>gi|224106217|ref|XP_002314088.1| predicted protein [Populus trichocarpa] gi|222850496|gb|EEE88043.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255544942|ref|XP_002513532.1| conserved hypothetical protein [Ricinus communis] gi|223547440|gb|EEF48935.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|164521187|gb|ABY60455.1| unknown, partial [Nuphar advena] Back     alignment and taxonomy information
>gi|357474051|ref|XP_003607310.1| Saccharopine dehydrogenase family protein expressed [Medicago truncatula] gi|355508365|gb|AES89507.1| Saccharopine dehydrogenase family protein expressed [Medicago truncatula] Back     alignment and taxonomy information
>gi|356543827|ref|XP_003540361.1| PREDICTED: uncharacterized protein LOC100781532 [Glycine max] Back     alignment and taxonomy information
>gi|356538501|ref|XP_003537742.1| PREDICTED: uncharacterized protein LOC100811957 [Glycine max] Back     alignment and taxonomy information
>gi|18403077|ref|NP_564570.1| Saccharopine dehydrogenase [Arabidopsis thaliana] gi|14517416|gb|AAK62598.1| At1g50450/F11F12_20 [Arabidopsis thaliana] gi|20453277|gb|AAM19877.1| At1g50450/F11F12_20 [Arabidopsis thaliana] gi|332194431|gb|AEE32552.1| Saccharopine dehydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query296
TAIR|locus:2008041428 AT1G50450 [Arabidopsis thalian 0.851 0.588 0.730 3.1e-99
TAIR|locus:2008041 AT1G50450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 187/256 (73%), Positives = 217/256 (84%)

Query:    41 VMAAELVRVARNESKGEPERLRYYVRFSXXXXXXXXXXPTILATSFLLLGEEVVAYNKGE 100
             VMAAE+V  AR+E KG+PE+LR    FS          PTILATSFLLLGEEV AY +GE
Sbjct:   177 VMAAEMVAAARSEDKGKPEKLR----FSYYTAGTGGAGPTILATSFLLLGEEVTAYKQGE 232

Query:   101 EITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFGTAPFFWNWGMV 160
             ++ L PYSGM++VDFGKGI ++DV+LLNLPEVRS  EVLGVPTV ARFGTAPFFWNWGM 
Sbjct:   233 KVKLRPYSGMITVDFGKGIRKRDVYLLNLPEVRSTHEVLGVPTVVARFGTAPFFWNWGME 292

Query:   161 TMQRLFPAEYLRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHR 220
              M +L P+E LRDR+KVQQ+V+LFDPVVRA DG AGERVSMRVDLEC+DGR TVG+FSH+
Sbjct:   293 IMTKLLPSEVLRDRTKVQQMVELFDPVVRAMDGFAGERVSMRVDLECSDGRTTVGLFSHK 352

Query:   221 RLSVSVGTAIAAFVLAVLEGATQPGVWFPEEPEGIAIEAREVLLKRASQGTINFVMNKAP 280
             +LSVSVG + AAFV A+LEG+TQPGVWFPEEP+GIA+EAREVLLKRASQGT NF++NK P
Sbjct:   353 KLSVSVGVSTAAFVAAMLEGSTQPGVWFPEEPQGIAVEAREVLLKRASQGTFNFILNKPP 412

Query:   281 WMVETEPKELGLGIYI 296
             WMVETEPKE+ LGIY+
Sbjct:   413 WMVETEPKEVVLGIYV 428


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      296       286   0.00086  115 3  11 22  0.44    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  186 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.45u 0.18s 20.63t   Elapsed:  00:00:01
  Total cpu time:  20.45u 0.18s 20.63t   Elapsed:  00:00:01
  Start:  Fri May 10 03:46:22 2013   End:  Fri May 10 03:46:23 2013


GO:0000166 "nucleotide binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.44LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.IX.3638.1
hypothetical protein (399 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.V.3086.1
hypothetical protein (287 aa)
      0.459
gw1.XIII.1190.1
SubName- Full=Putative uncharacterized protein; (300 aa)
      0.421

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query296
pfam03435380 pfam03435, Saccharop_dh, Saccharopine dehydrogenas 3e-05
>gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase Back     alignment and domain information
 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 29/175 (16%), Positives = 51/175 (29%), Gaps = 24/175 (13%)

Query: 99  GEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLGVPTVSARFG-TAPFFWNW 157
           G+ + +   S   ++ F  GIG    + + L    +   V      +            +
Sbjct: 189 GKWVEVGWGSHERTIPFPYGIGPGYAYEIYLNRPGTLTRVRSWLPEADGVLFGTIRIPGY 248

Query: 158 GMVTMQRLFPAEYLRD------RSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLE--CTD 209
             V ++ L     LR          +  L  L +            +V + V++E     
Sbjct: 249 LTV-IKLLGDLGLLRPTVHYAYIPPLDALKSLLESPASLGPEEQD-KVRIGVEVEGIDKL 306

Query: 210 GRNTVGIFSH-----------RRL-SVSVGTAIAAFVLAVLEGA-TQPGVWFPEE 251
           G    G   +           R     + GT        +  G   +PGV  PEE
Sbjct: 307 GVLLTGHIYNAYGSGLSIEEGRSAMPYTTGTPAQVAAALLAGGEWAKPGVVEPEE 361


This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase. Length = 380

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 296
COG1748389 LYS9 Saccharopine dehydrogenase and related protei 99.96
PF03435386 Saccharop_dh: Saccharopine dehydrogenase ; InterPr 99.85
COG3268382 Uncharacterized conserved protein [Function unknow 99.55
PLN028191042 lysine-ketoglutarate reductase/saccharopine dehydr 98.8
KOG2733423 consensus Uncharacterized membrane protein [Functi 95.68
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] Back     alignment and domain information
Probab=99.96  E-value=1.1e-28  Score=235.17  Aligned_cols=228  Identities=19%  Similarity=0.182  Sum_probs=185.9

Q ss_pred             hhhhhhhhhhhhcccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecCCCCCC------hh--HHHHHH
Q 022519           15 FLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAG------PT--ILATSF   86 (296)
Q Consensus        15 ~~~~~~~~~~~~~g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g~g~~G------~~--~~~t~l   86 (296)
                      |+..+.+...++++...+|+|||+||++|++++++++    |++++|||++      .+.+.-|      -.  +.+.+|
T Consensus       106 ~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~----~~i~si~iy~------g~~g~~~~~~l~ya~tws~e~~l  175 (389)
T COG1748         106 WKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELF----DEIESIDIYV------GGLGEHGDNPLGYATTWSPEINL  175 (389)
T ss_pred             hhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhh----ccccEEEEEE------ecCCCCCCCCccceeeecHHHhH
Confidence            8888888888988999999999999999999996554    5999999998      2222222      11  788999


Q ss_pred             HHhCCcceEeeCCeEEEecCCccceEEEcCCCcceeEEEEecCChhhhhhhhcC-CCeEEEEeecC-hHHHHHHHHHHHh
Q 022519           87 LLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VPTVSARFGTA-PFFWNWGMVTMQR  164 (296)
Q Consensus        87 ~~l~~p~~v~~~Gr~~~v~~~s~~r~vdFp~~vG~r~~y~i~~pD~~Tlp~~~g-i~~V~~r~g~~-~~~~~~ll~~l~~  164 (296)
                      +++.+|+.+|+||+|++|+|+++.+.++||. +|...+|.++|+|+.||.++++ +.+++++++|. +.++++ +++|+.
T Consensus       176 ~e~~~p~~~~~~Gk~~~v~~~~~~~~~~~~~-~G~~~~y~~~~~el~sL~~~i~~~~~~~~~~t~r~~g~~~~-i~~L~~  253 (389)
T COG1748         176 REYTRPARYWENGKWVEVDPLEEREVFEFPV-IGYGDVYAFYHDELRSLVKTIPGVVRTRFEMTFRYPGHLEV-IKALRD  253 (389)
T ss_pred             HHhcCceEEEeCCEEEEecCcccccccccCC-CCceeEEecCCccHHHHHHhCcccceeeEEeecCcccHHHH-HHHHHH
Confidence            9999999999999999999999999999986 7999999999999999999997 78999999999 999998 468888


Q ss_pred             hccccccccch--------hhhhhhhhhhhhhhhccccCCceeEEEEEEEe-cCCceEEE---Eeec---------CCcc
Q 022519          165 LFPAEYLRDRS--------KVQQLVQLFDPVVRAFDGIAGERVSMRVDLEC-TDGRNTVG---IFSH---------RRLS  223 (296)
Q Consensus       165 lg~~~lL~~~~--------~~~~l~~~~~~~~~~~~~~~g~~~~m~v~v~g-~~G~~~~~---~~~~---------~~~~  223 (296)
                      +|   |++.++        ++++++.++.......++ ..+.+.|.++|++ |||+....   .++|         ..++
T Consensus       254 lG---ll~~~~v~~~~~i~p~eflk~vl~~~~s~~~~-~~d~t~i~v~v~G~kdG~~~~~~y~~~~~~~~~~~~~~~ais  329 (389)
T COG1748         254 LG---LLSREPVKVQQEIVPLEFLKAVLPDPLSLAPD-YKDVTVIGVEVKGTKDGRDKTVFYNVKDHAEAYSEVGSSAIS  329 (389)
T ss_pred             cC---CCcccccccccccchHHHHHHhcccccccCCC-cCceEEEEEEEEEEEcCeeeEEEecchhhHHHhhccccceee
Confidence            86   555442        356666654333333332 3455689999996 69987633   3333         3478


Q ss_pred             cccHHHHHHHHHHHHcCC-CCCcccCCcCCCCccHH
Q 022519          224 VSVGTAIAAFVLAVLEGA-TQPGVWFPEEPEGIAIE  258 (296)
Q Consensus       224 ~~Tg~~aa~~A~~ll~G~-~~~Gv~~PE~~~g~~~~  258 (296)
                      ++||++|+++|++|++|+ ..+||++||++..+++.
T Consensus       330 ~ttg~pa~~~a~ll~~g~~~~~Gv~~~E~l~~~~~~  365 (389)
T COG1748         330 YTTGVPAAIGAELLAEGEWETPGVVNPEELGPDPFL  365 (389)
T ss_pred             hhccccHHHHHHHHHcCCCCcCcEecHHHhCCChhH
Confidence            999999999999999999 89999999999988864



>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase Back     alignment and domain information
>COG3268 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase Back     alignment and domain information
>KOG2733 consensus Uncharacterized membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query296
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
2z2v_A365 Hypothetical protein PH1688; L-lysine dehydrogenas 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 60/368 (16%), Positives = 106/368 (28%), Gaps = 145/368 (39%)

Query: 2   RLQQFLKLDYAMSFLRSEKLYLLLC--------------C-------------FWI---- 30
           RLQ +LKL  A+  LR  K  +L+               C             FW+    
Sbjct: 133 RLQPYLKLRQALLELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 31  --------LILTDICY-MTVMAAEL------VRVARNESKGEPERL---RYYVR------ 66
                    +L  + Y +             +++  +  + E  RL   + Y        
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 67  ----------FSYYTAGTGGAGPTILATSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFG 116
                     F+            IL T+      + ++      I+L+ +S  L+ D  
Sbjct: 252 NVQNAKAWNAFNL--------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 117 KGIGRKDVFLLNLPEVRSAREVLGV-PTVSARFGTA----PFFW-NWGMVTMQRLFPAEY 170
           K +  K    L+       REVL   P   +    +       W NW  V   +L     
Sbjct: 304 KSLLLK---YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL----- 355

Query: 171 LRDRSKVQQLVQLFDPVVRAFDGIAGERVSMRVDLECTDGRNTVGIFSHRRLSVSVGTAI 230
               + ++  + + +P          E   M   L          +F     S      I
Sbjct: 356 ---TTIIESSLNVLEP---------AEYRKMFDRL---------SVF---PPSAH----I 387

Query: 231 AAFVLAVLEGATQPGVWF---PEEPEGIAIEAREVLLKRASQGTINFVMNKAPWMVETEP 287
              +L+++        WF     +   +  +     L + S             +VE +P
Sbjct: 388 PTILLSLI--------WFDVIKSDVMVVVNK-----LHKYS-------------LVEKQP 421

Query: 288 KELGLGIY 295
           KE  + I 
Sbjct: 422 KESTISIP 429


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query296
4ina_A405 Saccharopine dehydrogenase; structural genomics, P 99.97
2z2v_A365 Hypothetical protein PH1688; L-lysine dehydrogenas 99.91
3abi_A365 Putative uncharacterized protein PH1688; L-lysine 99.84
1ff9_A450 Saccharopine reductase; lysine biosynthesis, alpha 99.4
2axq_A467 Saccharopine dehydrogenase; rossmann fold variant, 99.38
2ph5_A480 Homospermidine synthase; alpha-beta protein, struc 99.24
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} Back     alignment and structure
Probab=99.97  E-value=6.9e-30  Score=245.74  Aligned_cols=234  Identities=16%  Similarity=0.142  Sum_probs=182.7

Q ss_pred             cccchhhhhhhhhhhhhhcccccccCCccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecCCCCCCh-----hHHH
Q 022519            9 LDYAMSFLRSEKLYLLLCCFWILILTDICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTGGAGP-----TILA   83 (296)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~g~~~~~~dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g~g~~G~-----~~~~   83 (296)
                      ++|+++|+..+.+...++....++|++||++|++++++++    +.++++++|+|+.    +..+  +.|.     =+.+
T Consensus       117 ~~~~~~~~l~~~a~~aG~~~i~g~G~~PG~~~l~a~~~~~----~~~~~i~~i~i~~----~~gg--~~g~~~~~~~sp~  186 (405)
T 4ina_A          117 FEYKEQWAFHDRYKEKGVMALLGSGFDPGVTNVFCAYAQK----HYFDEIHEIDILD----CNAG--DHGYPFATNFNPE  186 (405)
T ss_dssp             BCSHHHHTTHHHHHHHTCEEEECCBTTTBHHHHHHHHHHH----HTCSEEEEEEEEE----EECC--BCSSSSCCSSCHH
T ss_pred             hhhHHHHHHHHHHHHhCCEEEEcCCCCccHHHHHHHHHHH----hccCcccEEEEEE----ecCC--CCCccceeeeCHH
Confidence            4566666666666665666667778999999999999993    3467999999754    2121  2221     1467


Q ss_pred             HHHHHhCCcceEeeCCeEEEecCCccceEEEcCCCcceeEEEEecCChhhhhhhhcC-CCeEEEEeecChHHHHHHHHHH
Q 022519           84 TSFLLLGEEVVAYNKGEEITLEPYSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG-VPTVSARFGTAPFFWNWGMVTM  162 (296)
Q Consensus        84 t~l~~l~~p~~v~~~Gr~~~v~~~s~~r~vdFp~~vG~r~~y~i~~pD~~Tlp~~~g-i~~V~~r~g~~~~~~~~ll~~l  162 (296)
                      ++++++.+|+.+|+||+|+++||+++.+.++||. +|++.+|+++|||+.|++++++ +++|++|++|++.+.+.+ .+|
T Consensus       187 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~fp~-~G~~~~y~~~~~e~~tl~~~~~~~~~v~~~~~~~~~~~~~~-~~L  264 (405)
T 4ina_A          187 INLREVSSKGRYWENGEWIETEPMEIMQVWDYPE-VGPKDSYLLYHEELESLVRNIKGLKRIRFFMTFGQSYLTHM-RCL  264 (405)
T ss_dssp             HHHHHTTSCEEEEETTEEEEESTTCCEEEEEETT-TEEEEEEEECCTHHHHHHHHSTTCCEEEEEEECCHHHHHHH-HHH
T ss_pred             HHHHHhcCCcEEEECCEEEEecCCceeEEEECCC-CceeeEEEeCCCcHHHHHhhCCCcceEEeecccCHHHHHHH-HHH
Confidence            8899999999999999999999999999999996 9999999999999999999997 799999999999999884 577


Q ss_pred             Hhhccccccccch---------hhhhhhhhhhhhhhhccccCCceeEEEEEEEe-cCCceE----EEEeecC--------
Q 022519          163 QRLFPAEYLRDRS---------KVQQLVQLFDPVVRAFDGIAGERVSMRVDLEC-TDGRNT----VGIFSHR--------  220 (296)
Q Consensus       163 ~~lg~~~lL~~~~---------~~~~l~~~~~~~~~~~~~~~g~~~~m~v~v~g-~~G~~~----~~~~~~~--------  220 (296)
                      +++|   |++..+         ++++|+.++.....+.+. ..+...|+++++| +||++.    +.+++|+        
T Consensus       265 ~~lG---l~~~~~v~~~g~~v~p~~~l~~~l~~~~~~~~~-~~d~~~i~~~v~g~~~G~~~~~~~~~~~~~~~~~~~~~~  340 (405)
T 4ina_A          265 ENVG---MLRIDEIEVNGCKVVPIQVLKALLPDPASLASR-TKGKTNIGCYIKGIKEGKARTIYIYNVCDHESCYREVNA  340 (405)
T ss_dssp             HHHT---TTCCSCEEETTEEECHHHHHHHHSCCHHHHTTT-CBSEEEEEEEEEEEETTEEEEEEEEEEEEHHHHHHHHSS
T ss_pred             HHcC---CCCCCceeeCCceecHHHHHHHhcchhhccCCC-CCCeEEEEEEEEEEECCeEEEEEEEEEeccccccccccc
Confidence            8886   444332         356666554333333332 3455789999996 799866    4567764        


Q ss_pred             -CcccccHHHHHHHHHHHHcCC-CCCcccCCcCCCCccHH
Q 022519          221 -RLSVSVGTAIAAFVLAVLEGA-TQPGVWFPEEPEGIAIE  258 (296)
Q Consensus       221 -~~~~~Tg~~aa~~A~~ll~G~-~~~Gv~~PE~~~g~~~~  258 (296)
                       .++++||+|++++|++|++|+ ..+||+.||+++..|+.
T Consensus       341 ~a~~~ttg~p~~i~a~li~~G~~~~~Gv~~~e~~~~~~fl  380 (405)
T 4ina_A          341 QAISYTTGVPAMIGAKLMLEGKWSGKGVFNMEELDPDPFM  380 (405)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSSCCSEEEEGGGSCSHHHH
T ss_pred             eEEEeccChhHHHHHHHHhCCccCCCceecccccCcHHHH
Confidence             368999999999999999999 89999999998765553



>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} Back     alignment and structure
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Back     alignment and structure
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query296
d1e5qa2267 Saccharopine reductase {Rice blast fungus (Magnapo 96.53
>d1e5qa2 d.81.1.2 (A:125-391) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Homoserine dehydrogenase-like
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.53  E-value=0.019  Score=49.56  Aligned_cols=126  Identities=9%  Similarity=-0.039  Sum_probs=78.5

Q ss_pred             CccHHHHHHHHHHHHhcccCCCCCcEEEEeeeeeeeecCCC--CCCh---hHHHHHHHHhCCcceEeeCCeEEEecC---
Q 022519           35 DICYMTVMAAELVRVARNESKGEPERLRYYVRFSYYTAGTG--GAGP---TILATSFLLLGEEVVAYNKGEEITLEP---  106 (296)
Q Consensus        35 dPGlTn~lA~~aa~~l~~~~l~~ve~IdI~i~~~~~~~g~g--~~G~---~~~~t~l~~l~~p~~v~~~Gr~~~v~~---  106 (296)
                      |||+.+++|..+.++++ +.-..|+++..+. ...-.+...  ..+=   =+.+-++....+|..+.+||+.++||+   
T Consensus         2 dPGidhm~A~~~i~~~~-~~~g~i~~f~s~c-GGLp~p~~~~np~~YkfsWsp~gvi~~~~~~A~~~~~G~~~~v~~~~~   79 (267)
T d1e5qa2           2 DPGIDHLYAIKTIEEVH-AAGGKIKTFLSYC-GGLPAPESSDNPLGYKFSWSSRGVLLALRNAASFYKDGKVTNVAGPEL   79 (267)
T ss_dssp             TTBHHHHHHHHHHHHHH-HTTCEEEEEEEEE-EEEECGGGCCSTTSCCBSSCHHHHHHHTTCCEEEEETTEEEEECGGGS
T ss_pred             CCcHHHHHHHHHHHHHH-hcCCcEEEEEEEe-cCccCCCCCCCCccceEEeccchhHHHhcCcceeeeCCeEEEECCHHh
Confidence            89999999999998886 4444566666443 111000000  0110   055677888899999999999999999   


Q ss_pred             CccceEEEcCCCcceeEEEEecCChhhhhhhhcC---CCeEEEEeecChHHHHHHHHHHHhhc
Q 022519          107 YSGMLSVDFGKGIGRKDVFLLNLPEVRSAREVLG---VPTVSARFGTAPFFWNWGMVTMQRLF  166 (296)
Q Consensus       107 ~s~~r~vdFp~~vG~r~~y~i~~pD~~Tlp~~~g---i~~V~~r~g~~~~~~~~ll~~l~~lg  166 (296)
                      +...+.++|.+ .+.-.+|.  .-|-...-..++   |+++.-+.--.+.+... +..++.+|
T Consensus        80 ~~~~~~~~~~~-~~~~E~~p--nrdsl~y~~~y~~~~i~t~~rgTLRy~G~~~~-~~~l~~lG  138 (267)
T d1e5qa2          80 MATAKPYFIYP-GFAFVAYP--NRDSTPYKERYQIPEADNIVRGTLRYQGFPQF-IKVLVDIG  138 (267)
T ss_dssp             GGGCEECCSST-TBCEEEEE--CSBCTTHHHHTTCTTCSEEEEEEEEETTHHHH-HHHHHHTT
T ss_pred             hhhceeeeccC-CcceEEEe--cCCCcchhhhhcCcchhhhhhhhhcccchHHH-HHHHHHHH
Confidence            55667788864 45555544  335443333344   55655455555666655 34666665