Citrus Sinensis ID: 022529

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL
ccccccccHHHHHHHHHHHHccccHHHHcccccccccccccccccHHHHHccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHccccccccccccccccccccHHHHHHHHHHHHHHccccEEEEcccEEcccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHccccccccc
cccccccccHHHHHHHHHHHHccHHHHcHHHHcHHHHcccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHcccccccc
maslaasstpaasigakemlgnplnvssavrtsapgasnpstfkpvalfskkkaappakskpvavspvneelakwygpdrriflpeglldrseipeyltgevpgdygydpfglskkpddfskYQAYELIHARWAMLGaagfiipeafnkfgancgpeavwFKTGAllldgntlnyfgknipiNLVFAVIAEIVLVGGaeyyritnglvidledklhpggpfdplglakdpdQFALLKVKEIKNGRLAMFAMLGFFLQAYvtgegpvenlakhlsdpfannLLTVISgnaeraptl
maslaasstpaasigakemlGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKkaappakskpvavspvneelakwygpdrRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLltvisgnaeraptl
MaslaasstpaasIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFskkkaappakskpvavspvNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL
**********************************************************************ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI**********
***********************************************************************************LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL
************SIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSK***************PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL
*************************************************************************KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooo
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MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query295 2.2.26 [Sep-21-2011]
Q9XF89280 Chlorophyll a-b binding p yes no 0.945 0.996 0.830 1e-118
P27517253 Chlorophyll a-b binding p N/A no 0.776 0.905 0.495 2e-56
P12330265 Chlorophyll a-b binding p no no 0.847 0.943 0.483 3e-56
P27490268 Chlorophyll a-b binding p N/A no 0.830 0.914 0.486 5e-56
P15193278 Chlorophyll a-b binding p N/A no 0.684 0.726 0.535 2e-55
P15194274 Chlorophyll a-b binding p N/A no 0.755 0.813 0.489 2e-55
P04782266 Chlorophyll a-b binding p N/A no 0.718 0.796 0.515 2e-55
P04781267 Chlorophyll a-b binding p N/A no 0.718 0.794 0.515 4e-55
P24006278 Chlorophyll a-b binding p N/A no 0.684 0.726 0.531 5e-55
P27492266 Chlorophyll a-b binding p N/A no 0.722 0.800 0.508 6e-55
>sp|Q9XF89|CB5_ARATH Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1 Back     alignment and function desciption
 Score =  425 bits (1092), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/284 (83%), Positives = 255/284 (89%), Gaps = 5/284 (1%)

Query: 12  ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
           AS+G  EMLG PLN  +  R+SAP AS+PSTFK VALFSKKK A    +K  AVS  ++E
Sbjct: 2   ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPA---PAKSKAVSETSDE 58

Query: 72  LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
           LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA
Sbjct: 59  LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118

Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191
           RWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178

Query: 192 IVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 251
           +VL+GGAEYYRITNGL  D EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAM
Sbjct: 179 VVLLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAM 236

Query: 252 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 295
           LGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 237 LGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.
Arabidopsis thaliana (taxid: 3702)
>sp|P27517|CB2_DUNTE Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1 Back     alignment and function description
>sp|P12330|CB21_ORYSJ Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2 Back     alignment and function description
>sp|P27490|CB28_PEA Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1 Back     alignment and function description
>sp|P15193|CB2A_PINSY Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1 Back     alignment and function description
>sp|P15194|CB2B_PINSY Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1 Back     alignment and function description
>sp|P04782|CB24_PETSP Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1 Back     alignment and function description
>sp|P04781|CB23_PETSP Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1 Back     alignment and function description
>sp|P24006|CB2A_PYRPY Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1 Back     alignment and function description
>sp|P27492|CB21_TOBAC Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
255557841292 chlorophyll A/B binding protein, putativ 0.989 1.0 0.857 1e-135
225459918290 PREDICTED: chlorophyll a-b binding prote 0.938 0.955 0.871 1e-132
356535308287 PREDICTED: chlorophyll a-b binding prote 0.972 1.0 0.844 1e-131
255638437287 unknown [Glycine max] 0.972 1.0 0.840 1e-131
224127848290 light-harvesting complex II protein Lhcb 0.938 0.955 0.861 1e-130
356576567288 PREDICTED: chlorophyll a-b binding prote 0.972 0.996 0.837 1e-129
261351266287 chloroplast pigment-binding protein CP26 0.959 0.986 0.821 1e-125
449447521288 PREDICTED: chlorophyll a-b binding prote 0.932 0.954 0.829 1e-124
1644289283 chlorophyll a/b-binding protein CP26 in 0.952 0.992 0.796 1e-123
356530963291 PREDICTED: chlorophyll a-b binding prote 0.942 0.955 0.836 1e-122
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis] gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/295 (85%), Positives = 271/295 (91%), Gaps = 3/295 (1%)

Query: 1   MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
           MASLAAS   A S+G  EMLGNPLN S A R++AP +S PST K VALFSKKKAAPP K+
Sbjct: 1   MASLAASRA-AGSLGVSEMLGNPLNFSGATRSAAPTSSTPSTLKTVALFSKKKAAPPPKA 59

Query: 61  KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
           KP AVSPV++ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 60  KPAAVSPVDDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 119

Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
           +KYQAYELIHARWAMLGAAGFI+PEAFNKFGANCGPEAVWFKTGALLLDG TLNYFG +I
Sbjct: 120 AKYQAYELIHARWAMLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSI 179

Query: 181 PINLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 240
           PINLV AVIAE+VL+GGAEYYRI NGL  DLEDKLHPGGPFDPLGLAKDPDQ A+LKVKE
Sbjct: 180 PINLVVAVIAEVVLLGGAEYYRIINGL--DLEDKLHPGGPFDPLGLAKDPDQAAILKVKE 237

Query: 241 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 295
           IKNGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTV++G+AERAPTL
Sbjct: 238 IKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVLAGSAERAPTL 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Vitis vinifera] gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera] gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|255638437|gb|ACU19528.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa] gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa] gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum] Back     alignment and taxonomy information
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Cucumis sativus] gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea] Back     alignment and taxonomy information
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
TAIR|locus:2122794280 LHCB5 "light harvesting comple 0.938 0.989 0.797 1.8e-119
UNIPROTKB|P12330265 CAB1R "Chlorophyll a-b binding 0.684 0.762 0.545 1.5e-53
UNIPROTKB|P12331261 CAB2R "Chlorophyll a-b binding 0.684 0.773 0.545 1.5e-53
TAIR|locus:2019287267 CAB3 "chlorophyll A/B binding 0.684 0.756 0.523 2.7e-52
TAIR|locus:2019372267 CAB2 "chlorophyll A/B-binding 0.684 0.756 0.523 2.7e-52
TAIR|locus:2019322267 CAB1 "chlorophyll A/B binding 0.684 0.756 0.523 2.7e-52
TAIR|locus:2044988265 LHCB2.2 "photosystem II light 0.684 0.762 0.535 1.2e-51
TAIR|locus:2042148265 LHCB2.1 "photosystem II light 0.684 0.762 0.535 1.2e-51
TAIR|locus:2040934265 LHB1B2 "photosystem II light h 0.684 0.762 0.519 1.9e-51
TAIR|locus:2040944266 LHB1B1 "light-harvesting chlor 0.684 0.759 0.519 1.9e-51
TAIR|locus:2122794 LHCB5 "light harvesting complex of photosystem II 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
 Identities = 225/282 (79%), Positives = 243/282 (86%)

Query:    14 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELA 73
             +G  EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELA
Sbjct:     4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELA 60

Query:    74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
             KWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARW
Sbjct:    61 KWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARW 120

Query:   134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 193
             AMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+V
Sbjct:   121 AMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVV 180

Query:   194 LVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 253
             L+GGAEYYRITNGL  D EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLG
Sbjct:   181 LLGGAEYYRITNGL--DFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 238

Query:   254 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 295
             FF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct:   239 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009533 "chloroplast stromal thylakoid" evidence=IDA
GO:0009765 "photosynthesis, light harvesting" evidence=IEA
GO:0015979 "photosynthesis" evidence=ISS;IMP
GO:0016020 "membrane" evidence=IEA;IDA
GO:0016168 "chlorophyll binding" evidence=ISS
GO:0030076 "light-harvesting complex" evidence=ISS
GO:0009783 "photosystem II antenna complex" evidence=IMP
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0010287 "plastoglobule" evidence=IDA
GO:0010196 "nonphotochemical quenching" evidence=IMP
GO:0009579 "thylakoid" evidence=IDA
GO:0009637 "response to blue light" evidence=IEP;RCA
GO:0010114 "response to red light" evidence=IEP;RCA
GO:0010218 "response to far red light" evidence=IEP;RCA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0009517 "PSII associated light-harvesting complex II" evidence=IDA
UNIPROTKB|P12330 CAB1R "Chlorophyll a-b binding protein 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P12331 CAB2R "Chlorophyll a-b binding protein 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2019287 CAB3 "chlorophyll A/B binding protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019372 CAB2 "chlorophyll A/B-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2019322 CAB1 "chlorophyll A/B binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044988 LHCB2.2 "photosystem II light harvesting complex gene 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042148 LHCB2.1 "photosystem II light harvesting complex gene 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040934 LHB1B2 "photosystem II light harvesting complex gene B1B2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040944 LHB1B1 "light-harvesting chlorophyll-protein complex II subunit B1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XF89CB5_ARATHNo assigned EC number0.83090.94570.9964yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00031964001
SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_61, whole genome shotgun sequence); (290 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
PLN00025262 PLN00025, PLN00025, photosystem II light harvestin 1e-81
PLN00171324 PLN00171, PLN00171, photosystem light-harvesting c 1e-64
PLN00147252 PLN00147, PLN00147, light-harvesting complex I chl 7e-46
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 7e-44
PLN00048262 PLN00048, PLN00048, photosystem I light harvesting 2e-43
PLN00187286 PLN00187, PLN00187, photosystem II light-harvestin 2e-42
PLN00099243 PLN00099, PLN00099, light-harvesting complex IChlo 9e-41
PLN00098267 PLN00098, PLN00098, light-harvesting complex I chl 7e-38
PLN00097244 PLN00097, PLN00097, photosystem I light harvesting 2e-34
PLN00101250 PLN00101, PLN00101, Photosystem I light-harvesting 2e-33
PLN00100246 PLN00100, PLN00100, light-harvesting complex chlor 6e-27
PLN00170255 PLN00170, PLN00170, photosystem II light-harvestin 1e-18
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 2e-08
PLN00089209 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c bi 5e-08
PLN00120202 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c bi 3e-05
pfam00504135 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding 8e-04
>gnl|CDD|215033 PLN00025, PLN00025, photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information 
 Score =  246 bits (631), Expect = 1e-81
 Identities = 120/235 (51%), Positives = 149/235 (63%), Gaps = 13/235 (5%)

Query: 52  KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
           +K      +    V+      + WYGPDR  +L  G     E P YLTGE PGDYG+D  
Sbjct: 23  RKVGNGRVTMRKTVAKAAGSGSIWYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTA 79

Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
           GLS  P+ F++ +  E+IHARWAMLGA G + PE   K G   G EAVWFK GA +    
Sbjct: 80  GLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGAQIFSEG 138

Query: 172 TLNYFGKNIPINLVFA--VIA----EIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLG 225
            L+Y G     +LV A  ++A    ++VL+G  E YR+  G + +  D L+PGG FDPLG
Sbjct: 139 GLDYLGNP---SLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLG 195

Query: 226 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 280
           LA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 196 LADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANN 250

Length = 262
>gnl|CDD|215088 PLN00171, PLN00171, photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>gnl|CDD|215076 PLN00147, PLN00147, light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177680 PLN00048, PLN00048, photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>gnl|CDD|177781 PLN00187, PLN00187, photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>gnl|CDD|177717 PLN00099, PLN00099, light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>gnl|CDD|177716 PLN00098, PLN00098, light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>gnl|CDD|165670 PLN00097, PLN00097, photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>gnl|CDD|215054 PLN00100, PLN00100, light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>gnl|CDD|215087 PLN00170, PLN00170, photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information
>gnl|CDD|177710 PLN00089, PLN00089, fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215063 PLN00120, PLN00120, fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>gnl|CDD|215956 pfam00504, Chloroa_b-bind, Chlorophyll A-B binding protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 295
PLN00187286 photosystem II light-harvesting complex II protein 100.0
PLN00025262 photosystem II light harvesting chlorophyll a/b bi 100.0
PLN00171324 photosystem light-harvesting complex -chlorophyll 100.0
PLN00098267 light-harvesting complex I chlorophyll a/b-binding 100.0
PLN00101250 Photosystem I light-harvesting complex type 4 prot 100.0
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 100.0
PLN00097244 photosystem I light harvesting complex Lhca2/4, ch 100.0
PLN00099243 light-harvesting complex IChlorophyll A-B binding 100.0
PLN00147252 light-harvesting complex I chlorophyll-a/b binding 100.0
PLN00100246 light-harvesting complex chlorophyll-a/b protein o 100.0
PLN00170255 photosystem II light-harvesting-Chl-binding protei 100.0
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 100.0
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 100.0
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 100.0
PLN00098 267 light-harvesting complex I chlorophyll a/b-binding 99.57
PLN00101250 Photosystem I light-harvesting complex type 4 prot 99.54
PLN00147 252 light-harvesting complex I chlorophyll-a/b binding 99.48
PLN00170 255 photosystem II light-harvesting-Chl-binding protei 99.43
PLN00097 244 photosystem I light harvesting complex Lhca2/4, ch 99.41
PLN00171 324 photosystem light-harvesting complex -chlorophyll 99.41
PLN00048262 photosystem I light harvesting chlorophyll a/b bin 99.4
PLN00025 262 photosystem II light harvesting chlorophyll a/b bi 99.39
PLN00100 246 light-harvesting complex chlorophyll-a/b protein o 99.37
PLN00089209 fucoxanthin-chlorophyll a/c binding protein; Provi 99.36
PLN00187286 photosystem II light-harvesting complex II protein 99.35
PLN00099 243 light-harvesting complex IChlorophyll A-B binding 99.32
PF00504156 Chloroa_b-bind: Chlorophyll A-B binding protein; I 99.26
PLN00120202 fucoxanthin-chlorophyll a-c binding protein; Provi 99.1
PHA0233735 putative high light inducible protein 98.11
PLN00084214 photosystem II subunit S (PsbS); Provisional 97.98
PLN00014250 light-harvesting-like protein 3; Provisional 97.42
PHA0233735 putative high light inducible protein 96.73
PLN00014250 light-harvesting-like protein 3; Provisional 95.54
PLN00084214 photosystem II subunit S (PsbS); Provisional 89.48
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-65  Score=479.18  Aligned_cols=234  Identities=38%  Similarity=0.705  Sum_probs=193.2

Q ss_pred             hhhcCCccccccccccCCCCCCCCCCCcceeeccCCCCCCCCCCCCCccCCchhhhhhhcCCCcccccCCCcCCCCCCCC
Q 022529           17 KEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE   96 (295)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~r~~~lp~g~~~~~~~P~   96 (295)
                      +.+.|.++. .          +.++..+++++|+.++...++ +++       .+...||+++|++|||+     .+.|+
T Consensus         8 ~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~r~~w~p~-----~~~P~   63 (286)
T PLN00187          8 SSFMGTRVP-D----------VASNSGRIVARFGFGKKKKAA-KKA-------KKKSSKVGADRPLWFPG-----AKAPE   63 (286)
T ss_pred             hhhhhhhhc-c----------cccCccchhhhhccCcccccC-Ccc-------ccCccCCCCCccccCCC-----CCCcc
Confidence            556676654 1          244677888888753321111 111       11246789999999996     79999


Q ss_pred             CCCCCCCCCCCCCCCcCCCChhh-------------------------------------------HHHHHHHhhhhcce
Q 022529           97 YLTGEVPGDYGYDPFGLSKKPDD-------------------------------------------FSKYQAYELIHARW  133 (295)
Q Consensus        97 ~L~G~~pGd~gfDPLGL~~~p~~-------------------------------------------l~~~ReaELkHGR~  133 (295)
                      ||||++|||||||||||+++|+.                                           ++||||+|||||||
T Consensus        64 ~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHGRw  143 (286)
T PLN00187         64 WLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHGRW  143 (286)
T ss_pred             cccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhhHH
Confidence            99999999999999999999885                                           69999999999999


Q ss_pred             eheeccchhhhhhhccCCCCCCCcchhhhccccccCCCccccccccchhHHHHHHHHHHHHHhhhhheeeccCcccccCC
Q 022529          134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLVIDLED  213 (295)
Q Consensus       134 AMLA~vG~ivpE~~~~~G~~~~p~~~W~~aG~~~l~~~~l~y~g~~~pi~~~~~~~~qv~l~G~~E~~r~~~G~~~~~~d  213 (295)
                      ||||++||++||+++  |      ..|+++|...+..+ ..|++.+.++.+..++++|+++||++|++|+.+.   +..+
T Consensus       144 AMLAvaG~lvpEll~--G------~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~---~~~~  211 (286)
T PLN00187        144 AMLATLGALSVEALT--G------VTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAEL---DPEK  211 (286)
T ss_pred             HHHHhhchhhHHhcc--C------Cccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccCC---CCCC
Confidence            999999999999974  2      25999997654332 3588877776666778999999999999998642   3346


Q ss_pred             CCCCCCC-CCCCCCCCChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhh
Q 022529          214 KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS  286 (295)
Q Consensus       214 ~~~PGg~-FDPLgl~~dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~  286 (295)
                      ..||||. ||||||.+|+++++++|++|||||||||+|++||++|+.+||++|++||.+|++||+||||++++.
T Consensus       212 ~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~~n~~~~~~  285 (286)
T PLN00187        212 RLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS  285 (286)
T ss_pred             CCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence            7799997 999999999999999999999999999999999999999999999999999999999999999874

>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional Back     alignment and domain information
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional Back     alignment and domain information
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional Back     alignment and domain information
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional Back     alignment and domain information
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional Back     alignment and domain information
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional Back     alignment and domain information
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional Back     alignment and domain information
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional Back     alignment and domain information
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional Back     alignment and domain information
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional Back     alignment and domain information
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional Back     alignment and domain information
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional Back     alignment and domain information
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein Back     alignment and domain information
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PHA02337 putative high light inducible protein Back     alignment and domain information
>PLN00014 light-harvesting-like protein 3; Provisional Back     alignment and domain information
>PLN00084 photosystem II subunit S (PsbS); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
1vcr_A232 An Icosahedral Assembly Of Light-Harvesting Chlorop 6e-55
2bhw_A232 Pea Light-Harvesting Complex Ii At 2.5 Angstrom Res 7e-55
1rwt_A232 Crystal Structure Of Spinach Major Light-harvesting 2e-54
2wsc_1241 Improved Model Of Plant Photosystem I Length = 241 2e-35
2o01_1187 The Structure Of A Plant Photosystem I Supercomplex 4e-35
2wsc_3276 Improved Model Of Plant Photosystem I Length = 276 1e-31
3lw5_1170 Improved Model Of Plant Photosystem I Length = 170 2e-31
3pl9_A243 Crystal Structure Of Spinach Minor Light-Harvesting 6e-30
2wsc_2269 Improved Model Of Plant Photosystem I Length = 269 3e-29
2o01_2186 The Structure Of A Plant Photosystem I Supercomplex 5e-29
2wsc_4251 Improved Model Of Plant Photosystem I Length = 251 2e-26
2o01_3165 The Structure Of A Plant Photosystem I Supercomplex 3e-21
3lw5_2176 Improved Model Of Plant Photosystem I Length = 176 4e-20
3lw5_3172 Improved Model Of Plant Photosystem I Length = 172 5e-19
2o01_4165 The Structure Of A Plant Photosystem I Supercomplex 2e-18
3lw5_4166 Improved Model Of Plant Photosystem I Length = 166 6e-17
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB Protein Complex From Pea Thylakoid Membranes Length = 232 Back     alignment and structure 
Iteration: 1

 Score =  210 bits (535), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 141/209 (67%), Gaps = 7/209 (3%)
Query: 75  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
           WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWA
Sbjct: 16  WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
           MLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +
Sbjct: 73  MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 192 IVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 251
           ++L+G  E YRI  G + ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 132 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 191
Query: 252 LGFFLQAYVTGEGPVENLAKHLSDPFANN 280
            GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct: 192 FGFFVQAIVTGKGPLENLADHLADPVNNN 220
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting Complex At 2.72 Angstrom Resolution Length = 232 Back     alignment and structure
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I Length = 241 Back     alignment and structure
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I Length = 276 Back     alignment and structure
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I Length = 170 Back     alignment and structure
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting Complex Cp29 At 2.80 Angstrom Resolution Length = 243 Back     alignment and structure
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I Length = 269 Back     alignment and structure
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I Length = 251 Back     alignment and structure
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I Length = 176 Back     alignment and structure
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I Length = 172 Back     alignment and structure
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 165 Back     alignment and structure
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I Length = 166 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 7e-63
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 2e-54
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 8e-51
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 7e-50
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 3e-49
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 3e-48
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Length = 232 Back     alignment and structure
 Score =  197 bits (501), Expect = 7e-63
 Identities = 110/226 (48%), Positives = 143/226 (63%), Gaps = 7/226 (3%)

Query: 61  KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
           K      V    + WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F
Sbjct: 2   KSATTKKVASSGSPWYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETF 58

Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
           SK +  E+IH+RWAMLGA G + PE  ++ G     EAVWFK G+ +     L+Y G   
Sbjct: 59  SKNRELEVIHSRWAMLGALGSVFPELLSRNGVKF-GEAVWFKAGSQIFSEGGLDYLGNPS 117

Query: 181 PIN---LVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLK 237
            ++   ++     +++L+G  E YRI  G + ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 118 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELK 177

Query: 238 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 283
           VKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN  +
Sbjct: 178 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWS 223
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Length = 269 Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Length = 251 Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Length = 276 Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Length = 241 Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Length = 243 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
2bhw_A232 Chlorophyll A-B binding protein AB80; LHC-II, phot 100.0
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 100.0
2wsc_2269 LHCA2, type II chlorophyll A/B binding protein fro 100.0
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 100.0
2wsc_4251 Chlorophyll A-B binding protein P4, chloroplastic; 100.0
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 100.0
2bhw_A 232 Chlorophyll A-B binding protein AB80; LHC-II, phot 99.39
2wsc_4 251 Chlorophyll A-B binding protein P4, chloroplastic; 99.36
3pl9_A243 Chlorophyll A-B binding protein; CP29, light-harve 99.35
2wsc_2 269 LHCA2, type II chlorophyll A/B binding protein fro 99.33
2wsc_3276 LHCA3, type II chlorophyll A/B binding protein fro 99.31
2wsc_1241 AT3G54890, LHCA1; photosynthesis, electron transfe 99.22
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
Probab=100.00  E-value=1.3e-65  Score=468.03  Aligned_cols=217  Identities=51%  Similarity=0.923  Sum_probs=187.8

Q ss_pred             hhhhcCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCC
Q 022529           72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG  151 (295)
Q Consensus        72 ~~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G  151 (295)
                      .++|||+||++||  |+++ .+.|+||||++|||+|||||||++|+++++||||+|||||||||||++|+++||+++..|
T Consensus        13 ~~~~~~~~r~~~l--~~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G   89 (232)
T 2bhw_A           13 GSPWYGPDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG   89 (232)
T ss_dssp             TCTTSSTTCCCTT--GGGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCcccCCCccccc--Cccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence            4589999999999  4455 689999999999999999999999999999999999999999999999999999998877


Q ss_pred             CCCCCcchhhhccccccCCCccccccccchh---HHHHHHHHHHHHHhhhhheeeccCcccccCCCCCCCCCCCCCCCCC
Q 022529          152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAK  228 (295)
Q Consensus       152 ~~~~p~~~W~~aG~~~l~~~~l~y~g~~~pi---~~~~~~~~qv~l~G~~E~~r~~~G~~~~~~d~~~PGg~FDPLgl~~  228 (295)
                      ..+ ++..|+++|...+++.+++|++.+...   .+..++++|+++||++|.+|+.++...+..|..||||.||||||.+
T Consensus        90 ~~~-~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~  168 (232)
T 2bhw_A           90 VKF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAD  168 (232)
T ss_dssp             CCC-SCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTC
T ss_pred             cCC-cccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhcc
Confidence            543 367899999877766667788765321   2344567899999999999887643223346789999999999999


Q ss_pred             ChHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhhcccccCCCC
Q 022529          229 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL  295 (295)
Q Consensus       229 dpe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~~~~~~~~~~  295 (295)
                      |+++++++|++|||||||||+||+|+++|+.+||++|++||.+|++||||||+++++   .+.+|++
T Consensus       169 ~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~---~~~~~~~  232 (232)
T 2bhw_A          169 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYA---TNFVPGK  232 (232)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGT---TTTCSCC
T ss_pred             chHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHH---HhhcCCC
Confidence            999999999999999999999999999999999999999999999999999999873   4677764
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* Back     alignment and structure
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4* Back     alignment and structure
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea} Back     alignment and structure
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2* Back     alignment and structure
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3* Back     alignment and structure
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 295
d1rwta_218 f.43.1.1 (A:) Chlorophyll a-b binding protein {Spi 2e-70
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 218 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  215 bits (548), Expect = 2e-70
 Identities = 109/214 (50%), Positives = 139/214 (64%), Gaps = 7/214 (3%)

Query: 73  AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
           + WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH R
Sbjct: 1   SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 57

Query: 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVI 189
           WAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   ++    
Sbjct: 58  WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 116

Query: 190 AEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 249
            +++L+G  E YRI  G + ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 117 CQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 176

Query: 250 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 283
           +M GFF+QA VTG+GP+ENLA HL+DP  NN   
Sbjct: 177 SMFGFFVQAIVTGKGPLENLADHLADPVNNNAWN 210

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
d1rwta_218 Chlorophyll a-b binding protein {Spinach (Spinacia 100.0
d1rwta_ 218 Chlorophyll a-b binding protein {Spinach (Spinacia 99.47
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Chlorophyll a-b binding protein
superfamily: Chlorophyll a-b binding protein
family: Chlorophyll a-b binding protein
domain: Chlorophyll a-b binding protein
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=1.7e-65  Score=460.31  Aligned_cols=214  Identities=51%  Similarity=0.931  Sum_probs=175.6

Q ss_pred             hhhcCCCcccccCCCcCCCCCCCCCCCCCCCCCCCCCCCcCCCChhhHHHHHHHhhhhcceeheeccchhhhhhhccCCC
Q 022529           73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA  152 (295)
Q Consensus        73 ~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~gfDPLGL~~~p~~l~~~ReaELkHGR~AMLA~vG~ivpE~~~~~G~  152 (295)
                      +.|||+||++|||  ++. ++.|+||||++|||+|||||||++|+++++||||+|||||||||||++|++++|++++++.
T Consensus         1 ~~~~~~~r~~~~~--~~~-~~~P~~LdGs~pGD~GFDPLgls~d~~~~~~~ReaELKHGR~AMLA~vG~~~~E~~~~~~~   77 (218)
T d1rwta_           1 SPWYGPDRVKYLG--PFS-GESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV   77 (218)
T ss_dssp             CTTSSTTCCCTTG--GGG-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCCCCCCcccCC--ccc-cCCCcccCCCCCCCCCcCCcccCCCHHHHHHHHHHHHhhceehHhhhcceeehhhhccCCC
Confidence            3799999999996  343 6789999999999999999999999999999999999999999999999999999998765


Q ss_pred             CCCCcchhhhccccccCCCccccccccch--h-HHHHHHHHHHHHHhhhhheeeccCcccccCCCCCCCCCCCCCCCCCC
Q 022529          153 NCGPEAVWFKTGALLLDGNTLNYFGKNIP--I-NLVFAVIAEIVLVGGAEYYRITNGLVIDLEDKLHPGGPFDPLGLAKD  229 (295)
Q Consensus       153 ~~~p~~~W~~aG~~~l~~~~l~y~g~~~p--i-~~~~~~~~qv~l~G~~E~~r~~~G~~~~~~d~~~PGg~FDPLgl~~d  229 (295)
                      .. ....|+.++........+.+++.+..  . .+....+.++.+++.+|.+|..++......+..|||+.||||++.+|
T Consensus        78 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~fdPlg~~~~  156 (218)
T d1rwta_          78 KF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADD  156 (218)
T ss_dssp             CC-SCCSHHHHGGGGGSTTCBCGGGCTTSCCBCCHHHHHHHHHHHHHHHHHHHHHCBTTBCCSSSSCCCGGGCTTCTTCS
T ss_pred             CC-CCcccccccccccCcchhhhhcCchHHHHHHHHHHHHHHHHHHhhhhhhcccCCCcccccCCCCCCCCccccccCCC
Confidence            43 35678887765555445555544321  1 22233344556678899887765432334567788888999999999


Q ss_pred             hHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccCCcchhhhhhhhcCCccchHHHHhhcccccCC
Q 022529          230 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAP  293 (295)
Q Consensus       230 pe~~~~~k~kELKNGRLAMlAilG~~~Q~~vTG~gPl~nL~~h~adP~~~n~~~~~~~~~~~~~  293 (295)
                      +|+++++|+|||||||||||||+||++|+++||++|++||++|++||+|+||++.+.   .+||
T Consensus       157 ~e~~~~~k~kElkNGRLAMlAi~G~~~qe~vtG~gp~~nl~~h~~~P~~~n~~~~~~---~~~~  217 (218)
T d1rwta_         157 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFAT---NFVP  217 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHCTTTSSGGGGTT---SSCC
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCHHHHHHHHhcCchhhhHHHHHh---ccCC
Confidence            999999999999999999999999999999999999999999999999999997653   4555
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure