Citrus Sinensis ID: 022540

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MMLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccccccEEEEEccccccHHHHccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHccHHHHHHHcccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHcccccccHHHHHHcccHHccccHHHHHHHHHHcccccccccEEEEEEEEEccHHHHHHHHHHHHHHccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccEccEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHcccccEEccHHHHHHccccHHHcccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHEHHHEEcccccccc
Coil and Loop (DISEMBL)
mmlrasqlaspVLCAITQsliptlnlssssslsifqkpasfasfykslnpasnsnsfhihiisrsftspkaasfssgtegsspgggdrEILVQHLLVKEDDLNLLSELQRRVsqgedlsdlavehsicpskgeggmlgwvrkgqlvpefeevafttplnkvaRCKTKFGWHLLQVLSEREASLlqdiqpdelhkkmqdpnfhkeaqlidvrepeevalsslpgfqvlplrqfgswgpditvkfdpqkdtyvmchhgMRSLQVAQWLQTQGFRrvfnvsggihayatkvdpsipty
Flexible Loop (DISEMBL)
mmlrasqlASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFTSPKAAsfssgtegsspggGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSIcpskgeggmlGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGgihayatkvdpsipty
Low Complexity Region (SEG)
MMLRASQLASPVLCAITQsliptlnlssssslsIFQKPASFASFYKSLNPAsnsnsfhihiisrsftsPKAAsfssgtegsspgggDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Disordered region (IsUnstruct)
**********PVLCAITQSLIPTLNL*******IFQ**ASFASFYK**********FHIHII***************************ILVQHLLVKEDDLNLLSE*************LAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSER************************************VALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK********
Disordered Region (DISOPRED)
*************CAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFTS********************EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLA***************GWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQ************DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Disordered Region (DISEMBL)
********ASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFT*****************GGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Disordered Region (DISPRO)
MMLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q93WI0	299	Rhodanese-like/PpiC domai	yes	no	0.698	0.688	0.663	9e-82
P0A265	93	Peptidyl-prolyl cis-trans	yes	no	0.284	0.903	0.436	4e-13
P0A266	93	Peptidyl-prolyl cis-trans	N/A	no	0.284	0.903	0.436	4e-13
P0A9L5	93	Peptidyl-prolyl cis-trans	N/A	no	0.274	0.870	0.452	5e-13
P0A9L6	93	Peptidyl-prolyl cis-trans	yes	no	0.274	0.870	0.452	5e-13
P0A9L7	93	Peptidyl-prolyl cis-trans	N/A	no	0.274	0.870	0.452	5e-13
Q60B78	454	Chaperone SurA OS=Methylo	no	no	0.355	0.231	0.393	2e-12
Q2S9C1	434	Chaperone SurA OS=Hahella	yes	no	0.461	0.313	0.322	3e-12
Q5ZYR3	429	Chaperone SurA OS=Legione	yes	no	0.389	0.268	0.314	5e-12
Q5WZN0	429	Chaperone SurA OS=Legione	yes	no	0.389	0.268	0.314	5e-12

>sp|Q93WI0|STR12_ARATH Rhodanese-like/PpiC domain-containing protein 12 OS=Arabidopsis thaliana GN=At5g19370 PE=2 SV=1

 Score =  303 bits (776), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 138/208 (66%), Positives = 172/208 (82%), Gaps = 2/208 (0%)

Query: 88  REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVP 147
           REILVQHLLVK +D+ L +ELQ++   GE++SDLA E+SICPSK +GG+LGWV+ GQ+VP
Sbjct: 94  REILVQHLLVKNNDVELFAELQKKFLDGEEMSDLAAEYSICPSKKDGGILGWVKLGQMVP 153

Query: 148 EFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQL 207
           EFEE AF   LN+V RC+T+FG HLLQVLSERE   ++DIQ +ELH KMQDP F  EAQL
Sbjct: 154 EFEEAAFKAELNQVVRCRTQFGLHLLQVLSEREP--VKDIQVEELHSKMQDPVFMDEAQL 211

Query: 208 IDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQ 267
           IDVREP E+ ++SLPGF+V PLRQFG+W PDIT K +P+KDT+V+C  G RS+QVA WLQ
Sbjct: 212 IDVREPNEIEIASLPGFKVFPLRQFGTWAPDITSKLNPEKDTFVLCKVGGRSMQVANWLQ 271

Query: 268 TQGFRRVFNVSGGIHAYATKVDPSIPTY 295
           +QGF+ V+N++GGI AY+ KVDPSIPTY
Sbjct: 272 SQGFKSVYNITGGIQAYSLKVDPSIPTY 299

Arabidopsis thaliana (taxid: 3702)

>sp|P0A265|PPIC_SALTY Peptidyl-prolyl cis-trans isomerase C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ppiC PE=3 SV=2

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVA 153
           H+LVKE+ L L  +L  ++  G D   LA +HSICPS  +GG LG  R+GQ+VP F++V 
Sbjct: 9   HILVKEEKLAL--DLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVV 66

Query: 154 FTTP-LNKVARCKTKFGWHLLQVLSER 179
           F+ P L       T+FG+H+++VL  +
Sbjct: 67  FSCPVLEPTGPLHTQFGYHIIKVLYRK 93

PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A266|PPIC_SALTI Peptidyl-prolyl cis-trans isomerase C OS=Salmonella typhi GN=ppiC PE=3 SV=2

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVA 153
           H+LVKE+ L L  +L  ++  G D   LA +HSICPS  +GG LG  R+GQ+VP F++V 
Sbjct: 9   HILVKEEKLAL--DLLEQIKNGGDFEKLAKKHSICPSGKKGGHLGEFRQGQMVPAFDKVV 66

Query: 154 FTTP-LNKVARCKTKFGWHLLQVLSER 179
           F+ P L       T+FG+H+++VL  +
Sbjct: 67  FSCPVLEPTGPLHTQFGYHIIKVLYRK 93

PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates.

Salmonella typhi (taxid: 90370)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A9L5|PPIC_ECOLI Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli (strain K12) GN=ppiC PE=1 SV=2

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVA 153
           H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V 
Sbjct: 9   HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVV 66

Query: 154 FTTP-LNKVARCKTKFGWHLLQVL 176
           F+ P L       T+FG+H+++VL
Sbjct: 67  FSCPVLEPTGPLHTQFGYHIIKVL 90

PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates.

Escherichia coli (strain K12) (taxid: 83333)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A9L6|PPIC_ECOL6 Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ppiC PE=3 SV=2

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVA 153
           H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V 
Sbjct: 9   HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVV 66

Query: 154 FTTP-LNKVARCKTKFGWHLLQVL 176
           F+ P L       T+FG+H+++VL
Sbjct: 67  FSCPVLEPTGPLHTQFGYHIIKVL 90

PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0A9L7|PPIC_ECO57 Peptidyl-prolyl cis-trans isomerase C OS=Escherichia coli O157:H7 GN=ppiC PE=3 SV=2

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVA 153
           H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V 
Sbjct: 9   HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVV 66

Query: 154 FTTP-LNKVARCKTKFGWHLLQVL 176
           F+ P L       T+FG+H+++VL
Sbjct: 67  FSCPVLEPTGPLHTQFGYHIIKVL 90

PPIases accelerate the folding of proteins. It prefers amino acid residues with hydrophobic side chains like leucine and phenylalanine in the P1 position of the peptides substrates.

Escherichia coli O157:H7 (taxid: 83334)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q60B78|SURA_METCA Chaperone SurA OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) GN=surA PE=3 SV=1

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 17/122 (13%)

Query: 92  VQHLLVK-------EDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKG---EGGMLGWVR 141
           V+H+L++       ED  N L  L+ R+  G+D ++LA  HS    KG   +GG LGWV+
Sbjct: 292 VRHILIRPNEVLSDEDAKNKLLALKTRIENGDDFAELARGHS--DDKGSAIKGGDLGWVK 349

Query: 142 KGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREAS----LLQDIQPDELHKKM 196
            G LVP FEE       N+++   +T+FGWHL+QVL  +E+S    +L++   DEL K+ 
Sbjct: 350 PGALVPPFEEAMNALDENQLSDPVQTQFGWHLIQVLERQESSDTNEVLKNRARDELFKRK 409

Query: 197 QD 198
            D
Sbjct: 410 VD 411

Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.

Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) (taxid: 243233)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q2S9C1|SURA_HAHCH Chaperone SurA OS=Hahella chejuensis (strain KCTC 2396) GN=surA PE=3 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 25/161 (15%)

Query: 36  QKPASFASFYKSLNPASNS----NSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREIL 91
           Q P+ FA     L P   S    NS  +H ++      K    S   E S          
Sbjct: 247 QVPSLFADVAPKLAPGQTSEPIRNSSGVHFVA---MLEKRGGVSKVVEQSK--------- 294

Query: 92  VQHLLVKEDDL-------NLLSELQRRVSQGEDLSDLAVEHSI-CPSKGEGGMLGWVRKG 143
           V+H+LV++++L        L+ E+  +V  GED ++LA  +S    S   GG L WV  G
Sbjct: 295 VRHILVQQNELRDEIAAKKLIEEIYGKVQAGEDFAELAKAYSDDAVSAAAGGSLDWVNPG 354

Query: 144 QLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASL 183
            +VPEF+++   TP+  V++  ++ FGWH+LQV   REA +
Sbjct: 355 DMVPEFDQMMRETPVGAVSKPFQSTFGWHILQVQDRREADI 395

Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.

Hahella chejuensis (strain KCTC 2396) (taxid: 349521)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5ZYR3|SURA_LEGPH Chaperone SurA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=surA PE=3 SV=2

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 92  VQHLLVKEDD-------LNLLSELQRRVSQGEDLSDLAVEHSI-CPSKGEGGMLGWVRKG 143
           V+H+L+K D        +  ++ + R++  G+D + +A ++S+   S  +GG LGWV  G
Sbjct: 286 VRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPG 345

Query: 144 QLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFH 202
           +LVPEFE+   + PL+KV++  KT++GWHL++V++ R+    +  +  ++ + +Q   F 
Sbjct: 346 ELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFV 405

Query: 203 KEAQ 206
           +  Q
Sbjct: 406 EAVQ 409

Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.

Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) (taxid: 272624)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5WZN0|SURA_LEGPL Chaperone SurA OS=Legionella pneumophila (strain Lens) GN=surA PE=3 SV=1

 Score = 72.0 bits (175), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 92  VQHLLVKEDD-------LNLLSELQRRVSQGEDLSDLAVEHSI-CPSKGEGGMLGWVRKG 143
           V+H+L+K D        +  ++ + R++  G+D + +A ++S+   S  +GG LGWV  G
Sbjct: 286 VRHILLKPDASMVPSEAIKQVNNIYRQIQSGKDFALMAKQYSLDAASAVKGGDLGWVNPG 345

Query: 144 QLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFH 202
           +LVPEFE+   + PL+KV++  KT++GWHL++V++ R+    +  +  ++ + +Q   F 
Sbjct: 346 ELVPEFEKTMNSLPLHKVSKPVKTQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFV 405

Query: 203 KEAQ 206
           +  Q
Sbjct: 406 EAVQ 409

Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.

Legionella pneumophila (strain Lens) (taxid: 297245)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
225436662	296	PREDICTED: UPF0176 protein Pput_3956 [Vi	0.969	0.966	0.707	1e-105
356554167	291	PREDICTED: UPF0176 protein Pput_3956-lik	0.779	0.790	0.779	1e-105
255639033	291	unknown [Glycine max]	0.779	0.790	0.774	1e-104
358249358	292	uncharacterized protein LOC100803404 [Gl	0.779	0.787	0.770	1e-103
357493891	649	Peptidyl-prolyl cis-trans isomerase C [M	0.966	0.439	0.65	1e-103
388516905	291	unknown [Medicago truncatula]	0.966	0.979	0.65	1e-103
449480987	292	PREDICTED: LOW QUALITY PROTEIN: rhodanes	0.969	0.979	0.64	1e-102
255570207	294	rotamase, putative [Ricinus communis] gi	0.969	0.972	0.649	1e-100
152955225	289	parvulin-type peptidyl prolyl cis/trans	0.783	0.799	0.761	1e-97
224103965	296	predicted protein [Populus trichocarpa]	0.705	0.702	0.822	5e-93

>gi|225436662|ref|XP_002276538.1| PREDICTED: UPF0176 protein Pput_3956 [Vitis vinifera] gi|296083867|emb|CBI24255.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/304 (70%), Positives = 244/304 (80%), Gaps = 18/304 (5%)

Query: 2   MLRASQL---ASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPAS--NSNS 56
           MLRA+ L   ASP L A+  SLIPTLNL+S S   I +K +SF+S +  L P +   S+ 
Sbjct: 1   MLRAAHLPPGASPALVALKLSLIPTLNLTSPS---IIRKFSSFSSLHAFL-PKTFLPSSP 56

Query: 57  FHIHIISRSFTSPKA-----ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRR 111
           + + +  + F    A     ASFSSG  G++  G  REILVQHLLVKEDDL LL ELQ+R
Sbjct: 57  YPLSLGLKRFPPMVAQPCPRASFSSG--GNT--GSGREILVQHLLVKEDDLKLLLELQQR 112

Query: 112 VSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWH 171
           +S G DLSDLAVE+SICPSK EGGMLGWVRKGQ+VPEFEE AF  PLNKV RCKTKFGWH
Sbjct: 113 ISGGVDLSDLAVEYSICPSKEEGGMLGWVRKGQMVPEFEEAAFKAPLNKVVRCKTKFGWH 172

Query: 172 LLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQ 231
           LLQV+SERE SLLQDIQP ELH KMQDPNF +E QLIDVREPEEVA +SLPGFQVLPL+Q
Sbjct: 173 LLQVISEREESLLQDIQPVELHAKMQDPNFFEEVQLIDVREPEEVAQASLPGFQVLPLQQ 232

Query: 232 FGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS 291
           FG+WGP+IT KFDP+KDTY+MCHHGMRSLQVA+WLQTQGF+RVFNVSGGIHAYATK DPS
Sbjct: 233 FGNWGPEITTKFDPEKDTYLMCHHGMRSLQVAKWLQTQGFKRVFNVSGGIHAYATKADPS 292

Query: 292 IPTY 295
           IPTY
Sbjct: 293 IPTY 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554167|ref|XP_003545420.1| PREDICTED: UPF0176 protein Pput_3956-like [Glycine max]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/231 (77%), Positives = 204/231 (88%), Gaps = 1/231 (0%)

Query: 66  FTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVE 124
           F  PKA AS+ +G  G++ G   REILVQHLLVKEDD  LL  LQ+++S GEDLSDLAVE
Sbjct: 61  FMPPKATASYGTGASGAAEGDRPREILVQHLLVKEDDQKLLLYLQQKISSGEDLSDLAVE 120

Query: 125 HSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLL 184
           +S+CPSK EGGMLGWVRKGQ+VPEFEE AFT PLN+V RCKTKFGWHLLQVLSERE S+L
Sbjct: 121 YSLCPSKEEGGMLGWVRKGQMVPEFEEAAFTAPLNQVVRCKTKFGWHLLQVLSEREESIL 180

Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 244
           QDIQPDELH K+QDP+F  EAQLIDVREP+EVA +SLPGF VLPLRQFGSWGP+IT KFD
Sbjct: 181 QDIQPDELHMKIQDPSFLDEAQLIDVREPDEVAKASLPGFTVLPLRQFGSWGPEITTKFD 240

Query: 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
           PQKDTYVMCHHGMRSLQVA+WLQ+QGFR+V+N+SGGIHAYA +VDPS+PTY
Sbjct: 241 PQKDTYVMCHHGMRSLQVAKWLQSQGFRKVYNLSGGIHAYAVQVDPSVPTY 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639033|gb|ACU19817.1| unknown [Glycine max]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 179/231 (77%), Positives = 204/231 (88%), Gaps = 1/231 (0%)

Query: 66  FTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVE 124
           F  PKA AS+ +G  G++ G   REILVQHLLVKEDD  LL  LQ+++S GEDLSDLAVE
Sbjct: 61  FMPPKATASYGTGASGAAEGDRPREILVQHLLVKEDDQKLLLYLQQKISSGEDLSDLAVE 120

Query: 125 HSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLL 184
           +S+CPSK EGGMLGWVRKGQ+VPEFEE AFT PLN+V RCKTKFGWHLLQVLSERE S+L
Sbjct: 121 YSLCPSKEEGGMLGWVRKGQMVPEFEEAAFTAPLNQVVRCKTKFGWHLLQVLSEREESIL 180

Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 244
           QDIQPDELH K+QDP+F  EAQLIDVREP+EVA +SLPGF VLPLRQFGSWGP+IT KFD
Sbjct: 181 QDIQPDELHMKIQDPSFLDEAQLIDVREPDEVAKASLPGFTVLPLRQFGSWGPEITTKFD 240

Query: 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
           PQKDTYVMCHHGMRSL+VA+WLQ+QGFR+V+N+SGGIHAYA +VDPS+PTY
Sbjct: 241 PQKDTYVMCHHGMRSLRVAKWLQSQGFRKVYNLSGGIHAYAVQVDPSVPTY 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249358|ref|NP_001240041.1| uncharacterized protein LOC100803404 [Glycine max] gi|255636250|gb|ACU18465.1| unknown [Glycine max]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/231 (77%), Positives = 202/231 (87%), Gaps = 1/231 (0%)

Query: 66  FTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVE 124
           F  PKA AS+ +G   ++ G   REILVQHLLVKEDD  LL ++Q+R+S GEDLSDLAVE
Sbjct: 62  FMPPKATASYGTGASAAAEGDRPREILVQHLLVKEDDQKLLLDIQQRISSGEDLSDLAVE 121

Query: 125 HSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLL 184
           +S+CPSK EGGMLGWVRKGQ+VPEFEE AFT PLNKV  CKTKFGWHLLQVLSERE S+L
Sbjct: 122 YSLCPSKEEGGMLGWVRKGQMVPEFEEAAFTAPLNKVVSCKTKFGWHLLQVLSEREESIL 181

Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 244
           QDIQPDELH K+QDP+F   AQLIDVREPEEVA +SLPGF VLPLRQFGSWGP+IT KFD
Sbjct: 182 QDIQPDELHVKIQDPSFFDGAQLIDVREPEEVAKASLPGFTVLPLRQFGSWGPEITTKFD 241

Query: 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
           PQKDTYV+CHHGMRSLQVA+WLQ+QGFR+V+N+SGGIHAYA +VDPS+PTY
Sbjct: 242 PQKDTYVLCHHGMRSLQVAKWLQSQGFRKVYNLSGGIHAYAVQVDPSVPTY 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357493891|ref|XP_003617234.1| Peptidyl-prolyl cis-trans isomerase C [Medicago truncatula] gi|355518569|gb|AET00193.1| Peptidyl-prolyl cis-trans isomerase C [Medicago truncatula]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/300 (65%), Positives = 225/300 (75%), Gaps = 15/300 (5%)

Query: 2   MLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHI 61
           MLRA Q          +  +P   LSS S++      +  +  +  ++  S    FH H 
Sbjct: 359 MLRACQF---------RVGLPIPKLSSLSTIPSIFSFSFPSHSHSKIHTFSYKKPFHFHS 409

Query: 62  IS---RSFTS--PKAASFSSGTEGSS-PGGGDREILVQHLLVKEDDLNLLSELQRRVSQG 115
            S     FTS  P  AS S  T GSS  GG +REILVQHLLVKEDD  LL +LQ+RV+ G
Sbjct: 410 PSLPLSPFTSTMPPKASASYSTGGSSVEGGAEREILVQHLLVKEDDPKLLVDLQQRVAAG 469

Query: 116 EDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQV 175
           EDLSDLAVEHSICPSK EGGMLGWVRKGQ+VPEFEE AF+ PLNK+ RCKT+FGWHLLQV
Sbjct: 470 EDLSDLAVEHSICPSKDEGGMLGWVRKGQMVPEFEEAAFSAPLNKIVRCKTQFGWHLLQV 529

Query: 176 LSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW 235
           LSERE  +L DIQPDELH K QDPNF +EAQLIDVREPEEV  +SLPGF VLPLRQFG+W
Sbjct: 530 LSEREEPVLLDIQPDELHVKFQDPNFLEEAQLIDVREPEEVTTASLPGFTVLPLRQFGTW 589

Query: 236 GPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
           GP+I  KFD QKDTYV+CHHG+RSLQVA+WLQ+QGFR+V+N+SGGIHAYA KVDPS+PTY
Sbjct: 590 GPEINSKFDLQKDTYVLCHHGVRSLQVARWLQSQGFRKVYNISGGIHAYAVKVDPSVPTY 649

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516905|gb|AFK46514.1| unknown [Medicago truncatula]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/300 (65%), Positives = 225/300 (75%), Gaps = 15/300 (5%)

Query: 2   MLRASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHI 61
           MLRA Q          +  +P   LSS S++      +  +  +  ++  S    FH H 
Sbjct: 1   MLRACQF---------RVGLPIPKLSSLSTIPSIFSFSFPSHSHSKIHTFSYKKPFHFHS 51

Query: 62  IS---RSFTS--PKAASFSSGTEGSS-PGGGDREILVQHLLVKEDDLNLLSELQRRVSQG 115
            S     FTS  P  AS S  T GSS  GG +REILVQHLLVKEDD  LL +LQ+RV+ G
Sbjct: 52  PSLPLSPFTSTMPPKASASYSTGGSSVEGGAEREILVQHLLVKEDDPKLLVDLQQRVAAG 111

Query: 116 EDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQV 175
           EDLSDLAVEHSICPSK EGGMLGWVRKGQ+VPEFEE AF+ PLNK+ RCKT+FGWHLLQV
Sbjct: 112 EDLSDLAVEHSICPSKDEGGMLGWVRKGQMVPEFEEAAFSAPLNKIVRCKTQFGWHLLQV 171

Query: 176 LSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW 235
           LSERE  +L DIQPDELH K QDPNF +EAQLIDVREPEEV  +SLPGF VLPLRQFG+W
Sbjct: 172 LSEREEPVLLDIQPDELHVKFQDPNFLEEAQLIDVREPEEVTTASLPGFTVLPLRQFGTW 231

Query: 236 GPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
           GP+I  KFD QKDTYV+CHHG+RSLQVA+WLQ+QGFR+V+N+SGGIHAYA KVDPS+PTY
Sbjct: 232 GPEINSKFDLQKDTYVLCHHGVRSLQVARWLQSQGFRKVYNISGGIHAYAVKVDPSVPTY 291

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480987|ref|XP_004156048.1| PREDICTED: LOW QUALITY PROTEIN: rhodanese-like/PpiC domain-containing protein 12-like [Cucumis sativus]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/300 (64%), Positives = 228/300 (76%), Gaps = 14/300 (4%)

Query: 2   MLRASQL---ASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSF- 57
           M+R S+L   ASPV  A  Q  IP +++S + +L      ASF+S+         S SF 
Sbjct: 1   MMRCSRLPPLASPVFNAFRQCWIPAISISHNLNLHSASIYASFSSYV--------SKSFK 52

Query: 58  HIHIISRSFTSPKAASFSSGTEGSSPGGGD--REILVQHLLVKEDDLNLLSELQRRVSQG 115
           H+  +     S    SF      SS GG +  RE+LVQHLLVKEDD+ LLSELQ+R++ G
Sbjct: 53  HVKPLWIRPMSLHRPSFKVTASFSSAGGSEDGRELLVQHLLVKEDDIKLLSELQQRIAGG 112

Query: 116 EDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQV 175
           EDLSDLAVE+S+CPSK E GMLGWVRKGQ+VPEFEE AF  PLNKV +CKTKFGWHLLQV
Sbjct: 113 EDLSDLAVEYSLCPSKEEXGMLGWVRKGQMVPEFEEAAFNAPLNKVVKCKTKFGWHLLQV 172

Query: 176 LSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW 235
           LSERE S+L DIQP+ELH KMQD NF  +AQLIDVREPEEV  +SLP FQVLPLRQFGSW
Sbjct: 173 LSEREGSVLLDIQPEELHLKMQDSNFLNDAQLIDVREPEEVDQASLPAFQVLPLRQFGSW 232

Query: 236 GPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
           GP++  KFDP+KDTYV+CHHGMRS+QVA++LQTQGF++V+NV GGIHAY+ KVDPSIPTY
Sbjct: 233 GPEVATKFDPEKDTYVLCHHGMRSMQVARYLQTQGFKKVYNVCGGIHAYSLKVDPSIPTY 292

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570207|ref|XP_002526064.1| rotamase, putative [Ricinus communis] gi|223534645|gb|EEF36341.1| rotamase, putative [Ricinus communis]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/302 (64%), Positives = 226/302 (74%), Gaps = 16/302 (5%)

Query: 2   MLRA-----SQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASFASF---YKSLNPASN 53
           ML+A     S + SP   A+  S+IPTL+L+ S       K ++FA F    K L P+  
Sbjct: 1   MLKAYSNFPSLITSP---ALKLSVIPTLSLTCSLPSHFHNKHSTFAPFNFLTKILKPSLP 57

Query: 54  SNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVS 113
           S    I         P  AS  S   GS  G   REILVQHLLVKEDDL LL ELQ+R++
Sbjct: 58  S--LPIKWKPYMLGHPPCASSFSSGSGSVDG---REILVQHLLVKEDDLKLLVELQQRIA 112

Query: 114 QGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLL 173
            GEDLSDLAV++SICPSK EGGMLGWVRKG++VPEFEE AF  PLNKV +CKTKFGWHLL
Sbjct: 113 GGEDLSDLAVDYSICPSKAEGGMLGWVRKGEMVPEFEEAAFNAPLNKVVKCKTKFGWHLL 172

Query: 174 QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG 233
           QVLS+RE S+L+DIQPDE H KMQDP F +EAQLIDVREP+EV  +SLPGFQ+LPLRQFG
Sbjct: 173 QVLSDREESVLKDIQPDEFHVKMQDPKFVEEAQLIDVREPDEVEKASLPGFQILPLRQFG 232

Query: 234 SWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP 293
           SW  +I  KFD QKDTYVMCHHG+RSLQVA+WLQTQGF+RVFNV+GGIHAYA KVDPS+P
Sbjct: 233 SWATEIAAKFDSQKDTYVMCHHGVRSLQVAKWLQTQGFKRVFNVAGGIHAYAVKVDPSVP 292

Query: 294 TY 295
           TY
Sbjct: 293 TY 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|152955225|emb|CAM59673.1| parvulin-type peptidyl prolyl cis/trans isomerase [Lotus japonicus]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 176/231 (76%), Positives = 201/231 (87%)

Query: 65  SFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVE 124
           S  +PKA++  S    S  GGG+REILVQHLLVKE+D  LL +L +R+S+GEDLSDLAVE
Sbjct: 59  SIMAPKASASYSTGSSSGEGGGEREILVQHLLVKEEDQKLLLDLLQRISKGEDLSDLAVE 118

Query: 125 HSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLL 184
           +SICPSK EGGMLGWVRKGQ+VPEFEE AF  PLNKV RCKT+FGWHLLQVLSERE SLL
Sbjct: 119 YSICPSKDEGGMLGWVRKGQMVPEFEEAAFGAPLNKVVRCKTQFGWHLLQVLSEREESLL 178

Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 244
           QDIQP ELH K QDPNF +EAQLIDVREPEEV  +SLPGF VLPLRQFG+WGP++T KFD
Sbjct: 179 QDIQPAELHAKFQDPNFSEEAQLIDVREPEEVDKASLPGFTVLPLRQFGTWGPEVTTKFD 238

Query: 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
           PQKDTYVMCHHG+RSLQV++WLQ+QGFR+V+NVSGGIHAYA +VDPS+P Y
Sbjct: 239 PQKDTYVMCHHGVRSLQVSKWLQSQGFRKVYNVSGGIHAYAVQVDPSVPKY 289

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103965|ref|XP_002313264.1| predicted protein [Populus trichocarpa] gi|222849672|gb|EEE87219.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 172/209 (82%), Positives = 192/209 (91%), Gaps = 1/209 (0%)

Query: 88  REILVQHLLVKEDDLNLLSELQRRVSQG-EDLSDLAVEHSICPSKGEGGMLGWVRKGQLV 146
           RE+LVQHLLVKEDDL LL ELQ+R+S G EDLSDLAVE+S+CPSK EGGMLGWVRKGQ+V
Sbjct: 88  RELLVQHLLVKEDDLKLLLELQQRISGGGEDLSDLAVEYSLCPSKEEGGMLGWVRKGQMV 147

Query: 147 PEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ 206
           PEFEE AF+ PLNKV RCKTKFGWHLLQV+SERE SLL +IQ DELH K+QDP F KEAQ
Sbjct: 148 PEFEEAAFSAPLNKVVRCKTKFGWHLLQVISEREESLLGEIQADELHVKIQDPTFAKEAQ 207

Query: 207 LIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 266
           LIDVREP+EVA +SLPGF+VLPLRQFGSWGP++T KFDP+KDTYVMCHHGMRSLQVA+WL
Sbjct: 208 LIDVREPDEVAKASLPGFEVLPLRQFGSWGPEVTTKFDPEKDTYVMCHHGMRSLQVAKWL 267

Query: 267 QTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
           Q+QGF+RVFNVSGGIHAYA +VDPSIPTY
Sbjct: 268 QSQGFKRVFNVSGGIHAYAVRVDPSIPTY 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2150235	299	AT5G19370 [Arabidopsis thalian	0.698	0.688	0.663	3.1e-74
UNIPROTKB|Q607L7	106	MCA1742 "Rhodanese-like domain	0.359	1.0	0.392	1.1e-16
TIGR_CMR|CPS_3482	92	CPS_3482 "peptidyl-prolyl cis-	0.274	0.880	0.464	2.3e-14
TIGR_CMR|CPS_3636	92	CPS_3636 "peptidyl-prolyl cis-	0.274	0.880	0.452	3e-14
UNIPROTKB|P0A9L5	93	ppiC "peptidyl-prolyl cis-tran	0.274	0.870	0.452	3.8e-14
TIGR_CMR|SO_1832	92	SO_1832 "peptidyl-prolyl cis-t	0.281	0.902	0.441	2.1e-13
TIGR_CMR|GSU_0823	92	GSU_0823 "peptidyl-prolyl cis-	0.274	0.880	0.369	7.1e-13
UNIPROTKB|Q4KAR2	93	ppiC_1 "Peptidyl-prolyl cis-tr	0.291	0.924	0.393	1.5e-12
UNIPROTKB|Q5LWL7	276	SPO0058 "PPIC-type PPIASE doma	0.464	0.496	0.333	1.8e-12
TIGR_CMR|SPO_0058	276	SPO_0058 "PPIC-type PPIASE dom	0.464	0.496	0.333	1.8e-12

TAIR|locus:2150235 AT5G19370 [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 138/208 (66%), Positives = 172/208 (82%)

Query:    88 REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVP 147
             REILVQHLLVK +D+ L +ELQ++   GE++SDLA E+SICPSK +GG+LGWV+ GQ+VP
Sbjct:    94 REILVQHLLVKNNDVELFAELQKKFLDGEEMSDLAAEYSICPSKKDGGILGWVKLGQMVP 153

Query:   148 EFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQL 207
             EFEE AF   LN+V RC+T+FG HLLQVLSERE   ++DIQ +ELH KMQDP F  EAQL
Sbjct:   154 EFEEAAFKAELNQVVRCRTQFGLHLLQVLSEREP--VKDIQVEELHSKMQDPVFMDEAQL 211

Query:   208 IDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQ 267
             IDVREP E+ ++SLPGF+V PLRQFG+W PDIT K +P+KDT+V+C  G RS+QVA WLQ
Sbjct:   212 IDVREPNEIEIASLPGFKVFPLRQFGTWAPDITSKLNPEKDTFVLCKVGGRSMQVANWLQ 271

Query:   268 TQGFRRVFNVSGGIHAYATKVDPSIPTY 295
             +QGF+ V+N++GGI AY+ KVDPSIPTY
Sbjct:   272 SQGFKSVYNITGGIQAYSLKVDPSIPTY 299

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016853 "isomerase activity" evidence=IEA;ISS

UNIPROTKB|Q607L7 MCA1742 "Rhodanese-like domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 44/112 (39%), Positives = 67/112 (59%)

Query:   184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 243
             ++ + P ++   + +P       L+DVREP E A   + G   +P+ +  S   ++    
Sbjct:     1 MRQLTPHQVKALLDEPE--AAPLLLDVREPGEFAFCHIDGSLHIPMGEIVSRLGEL---- 54

Query:   244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
             DP   T V+CHHGMRS QVA++L+TQGF RV N++GGI A+A + DP +P Y
Sbjct:    55 DPDWTTVVVCHHGMRSFQVARFLETQGFGRVINLAGGIDAWAREADPGMPRY 106

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_3482 CPS_3482 "peptidyl-prolyl cis-trans isomerase C" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 39/84 (46%), Positives = 57/84 (67%)

Query:    94 HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVA 153
             H+LVK + L +  EL+ ++ +G +   LA +HS+CPSK +GG LG  R+GQ+V  F++V 
Sbjct:     8 HILVKTEKLAV--ELKTQLDKGANFGALAKKHSLCPSKKKGGDLGEFRRGQMVKAFDDVV 65

Query:   154 FTTPLNKV-ARCKTKFGWHLLQVL 176
             F  PL KV    KTKFG+HL++ L
Sbjct:    66 FKRPLLKVHGPIKTKFGYHLIKTL 89

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

TIGR_CMR|CPS_3636 CPS_3636 "peptidyl-prolyl cis-trans isomerase C" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 38/84 (45%), Positives = 56/84 (66%)

Query:    93 QHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 152
             +HLLV  ++  L   L+  +  G+D +++A EHS CPS  +GG LG    GQ+VPEF++V
Sbjct:     7 RHLLVDTEEKCLA--LKAEIEAGKDFAEVAKEHSNCPSNAQGGDLGSFGPGQMVPEFDKV 64

Query:   153 AFTTPLNKV-ARCKTKFGWHLLQV 175
              F+ PLN V    +T+FG+HLL+V
Sbjct:    65 VFSAPLNTVQGPVQTQFGYHLLEV 88

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

UNIPROTKB|P0A9L5 ppiC "peptidyl-prolyl cis-trans isomerase C (rotamase C)" [Escherichia coli K-12 (taxid:83333)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 38/84 (45%), Positives = 54/84 (64%)

Query:    94 HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVA 153
             H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V 
Sbjct:     9 HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVV 66

Query:   154 FTTP-LNKVARCKTKFGWHLLQVL 176
             F+ P L       T+FG+H+++VL
Sbjct:    67 FSCPVLEPTGPLHTQFGYHIIKVL 90

GO:0005515 "protein binding" evidence=IPI

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;IDA

GO:0006457 "protein folding" evidence=IEA

TIGR_CMR|SO_1832 SO_1832 "peptidyl-prolyl cis-trans isomerase C" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 38/86 (44%), Positives = 53/86 (61%)

Query:    93 QHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 152
             +HLLV  +D      L++++  G D + +A  HS CPS  +GG LG    G +V EF+EV
Sbjct:     7 RHLLVSSEDQ--CQALKQQILDGADFAQIARAHSSCPSGAQGGELGSFGPGMMVREFDEV 64

Query:   153 AFTTPLNKV-ARCKTKFGWHLLQVLS 177
              F+ PLN V    KT+FG+HLL+V S
Sbjct:    65 VFSAPLNVVQGPVKTQFGYHLLEVTS 90

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

TIGR_CMR|GSU_0823 GSU_0823 "peptidyl-prolyl cis-trans isomerase C" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 31/84 (36%), Positives = 57/84 (67%)

Query:    93 QHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 152
             +H+LV  +   L  +L+  +  G + +D+A +HS+CPS+ +GG LG   +GQ+V EF+++
Sbjct:     7 RHILVSSEAECL--QLKAEIEAGAEFADVARQHSLCPSRAQGGDLGTFTQGQMVKEFDDI 64

Query:   153 AFTTPLNKV-ARCKTKFGWHLLQV 175
              F+  +NKV    +T+FG+HL+++
Sbjct:    65 VFSGEINKVLGPVRTQFGYHLIEI 88

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

UNIPROTKB|Q4KAR2 ppiC_1 "Peptidyl-prolyl cis-trans isomerase C" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 35/89 (39%), Positives = 56/89 (62%)

Query:    93 QHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEV 152
             +H+LV  +     +EL+  +  G D +++A ++S CPS  +GG LG    GQ+V EF+ V
Sbjct:     7 RHILVASEAK--CNELKAEIEAGADFAEVAKKNSTCPSSRDGGNLGSFGPGQMVKEFDTV 64

Query:   153 AFTTPLNKV-ARCKTKFGWHLLQVLSERE 180
              F+ P+N V    KT+FG+HLL+V S ++
Sbjct:    65 VFSAPVNVVQGPVKTQFGYHLLEVTSRQD 93

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

UNIPROTKB|Q5LWL7 SPO0058 "PPIC-type PPIASE domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 176 (67.0 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 49/147 (33%), Positives = 75/147 (51%)

Query:    89 EILVQHLLV-KEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVP 147
             E    H+LV  ED+   + EL   +  G D +  A E S  PS   GG LGW   G +VP
Sbjct:   130 EYNASHILVPSEDEAKAVKEL---LDNGADFAATAKEKSTGPSGPNGGALGWFGAGAMVP 186

Query:   148 EFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER--EASLLQDIQPDELHKKMQDPNFHKE 204
             EFE+        +V+   +T+FGWH++ +  +R  EA  L +++ DEL  ++Q      E
Sbjct:   187 EFEQAVVALNAGQVSDPVQTQFGWHVIILNDKRKSEAPALDEVR-DELAGRIQQDAI--E 243

Query:   205 AQLIDVREPEEVALSSLPGFQVLPLRQ 231
             A+L ++ +  E+    L G +   LRQ
Sbjct:   244 ARLAELTKDSEIEKPELTGVEPAVLRQ 270

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_0058 SPO_0058 "PPIC-type PPIASE domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 176 (67.0 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 49/147 (33%), Positives = 75/147 (51%)

Query:    89 EILVQHLLV-KEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVP 147
             E    H+LV  ED+   + EL   +  G D +  A E S  PS   GG LGW   G +VP
Sbjct:   130 EYNASHILVPSEDEAKAVKEL---LDNGADFAATAKEKSTGPSGPNGGALGWFGAGAMVP 186

Query:   148 EFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER--EASLLQDIQPDELHKKMQDPNFHKE 204
             EFE+        +V+   +T+FGWH++ +  +R  EA  L +++ DEL  ++Q      E
Sbjct:   187 EFEQAVVALNAGQVSDPVQTQFGWHVIILNDKRKSEAPALDEVR-DELAGRIQQDAI--E 243

Query:   205 AQLIDVREPEEVALSSLPGFQVLPLRQ 231
             A+L ++ +  E+    L G +   LRQ
Sbjct:   244 ARLAELTKDSEIEKPELTGVEPAVLRQ 270

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93WI0	STR12_ARATH	No assigned EC number	0.6634	0.6983	0.6889	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	LOW CONFIDENCE prediction!
3rd Layer	5.2.1	LOW CONFIDENCE prediction!
4th Layer	5.2.1.8	LOW CONFIDENCE prediction!
3rd Layer	2.8.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00022284001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (296 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036804001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (118 aa)			•				•		0.482

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
cd01528	101	cd01528, RHOD_2, Member of the Rhodanese Homology	2e-41
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	3e-21
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	4e-19
pfam00639	94	pfam00639, Rotamase, PPIC-type PPIASE domain	2e-18
PRK15441	93	PRK15441, PRK15441, peptidyl-prolyl cis-trans isom	7e-17
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	1e-16
cd01444	96	cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and	1e-14
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	9e-14
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	1e-13
pfam13616	114	pfam13616, Rotamase_3, PPIC-type PPIASE domain	3e-13
PRK03095	287	PRK03095, prsA, peptidylprolyl isomerase; Reviewed	5e-13
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	1e-12
COG0760	320	COG0760, SurA, Parvulin-like peptidyl-prolyl isome	1e-11
PRK02998	283	PRK02998, prsA, peptidylprolyl isomerase; Reviewed	9e-11
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	1e-10
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	5e-09
TIGR02933	256	TIGR02933, nifM_nitrog, nitrogen fixation protein	5e-09
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	6e-09
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	2e-08
PRK00059	336	PRK00059, prsA, peptidylprolyl isomerase; Provisio	3e-08
PRK03002	285	PRK03002, prsA, peptidylprolyl isomerase; Reviewed	5e-08
PRK00162	108	PRK00162, glpE, thiosulfate sulfurtransferase; Val	9e-08
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	2e-07
cd01518	101	cd01518, RHOD_YceA, Member of the Rhodanese Homolo	2e-07
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	1e-06
COG1054	308	COG1054, COG1054, Predicted sulfurtransferase [Gen	1e-05
PTZ00356	115	PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isom	2e-05
PRK00142	314	PRK00142, PRK00142, putative rhodanese-related sul	6e-05
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	1e-04
cd01527	99	cd01527, RHOD_YgaP, Member of the Rhodanese Homolo	4e-04
TIGR04271	101	TIGR04271, ThiI_C_thiazole, thiazole biosynthesis	0.002
PRK01269	482	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase;	0.002

>gnl|CDD|238786 cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2

 Score =  138 bits (350), Expect = 2e-41
 Identities = 47/104 (45%), Positives = 65/104 (62%), Gaps = 3/104 (2%)

Query: 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDP 245
            I   EL + + D    +E  LIDVREPEE+ ++ LPGF  LP+ +      ++    +P
Sbjct: 1   QISVAELAEWLADER--EEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELD-SDNP 57

Query: 246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 289
            KD  V+CHHG RS+QVAQWL  QGF  V+N+ GGI A++ +VD
Sbjct: 58  DKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDAWSLEVD 101

Subgroup 2 includes uncharacterized putative rhodanese-related domains. Length = 101

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 86.1 bits (213), Expect = 3e-21
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 7/112 (6%)

Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPG-FQVLPLRQFGSWGPDITVKF 243
           + I  DE    +   +    A L+DVREPEE     +PG    +PL +  +    + +  
Sbjct: 5   ETISEDEAALLLAGED----AVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLELPD 60

Query: 244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
           D      V C  G+RS   A  L+  GF  V+N+ GGI A+     P +  Y
Sbjct: 61  D--DPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRGY 110

Length = 110

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 79.7 bits (197), Expect = 4e-19
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 191 ELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDT- 249
           EL + + D    ++A L+DVREPEE A   +PG   +PL +      +     +  KD  
Sbjct: 1   ELKELLDD----EDAVLLDVREPEEYAAGHIPGAINIPLSEL----EERAALLELDKDKP 52

Query: 250 -YVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285
             V C  G RS + A+ L+  G   V+N+ GG+ A+ 
Sbjct: 53  IVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGMLAWK 89

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|216038 pfam00639, Rotamase, PPIC-type PPIASE domain

 Score = 78.1 bits (193), Expect = 2e-18
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)

Query: 94  HLLVK-------EDDLNLLSELQRRVSQGED-LSDLAVEHSI-CPSKGEGGMLGWVRKGQ 144
           H+L+K               E+  ++  GED  ++LA E+S  CPS   GG LGW  +GQ
Sbjct: 1   HILIKPPESADRAAAKAKAEEILEQLQSGEDTFAELAREYSDDCPSAANGGDLGWFTRGQ 60

Query: 145 LVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 176
           L PEFE+ AF+    +++   +T FG+H+++V 
Sbjct: 61  LPPEFEDAAFSLKEGEISGPVETPFGYHIIKVT 93

Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 94

>gnl|CDD|185338 PRK15441, PRK15441, peptidyl-prolyl cis-trans isomerase C; Provisional

 Score = 73.9 bits (181), Expect = 7e-17
 Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 3/84 (3%)

Query: 94  HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVA 153
           H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V 
Sbjct: 9   HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVV 66

Query: 154 FTTP-LNKVARCKTKFGWHLLQVL 176
           F+ P L       T+FG+H+++VL
Sbjct: 67  FSCPVLEPTGPLHTQFGYHIIKVL 90

Length = 93

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 15/130 (11%)

Query: 173 LQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF 232
           L++LS  E      +   +    +Q     K+  L+DVR      +  LP    +PL + 
Sbjct: 1   LKLLSPEER-----VSVKDYKNILQA---GKKHVLLDVRPKVHFEICRLPEAINIPLSEL 52

Query: 233 GSWGPDIT------VKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRR-VFNVSGGIHAYA 285
            S   ++       +  D     YV+C  G  S    + L+  G  R V ++ GG+ A+A
Sbjct: 53  LSKAAELKSLQELPLDNDKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKAWA 112

Query: 286 TKVDPSIPTY 295
            KVDP+ P Y
Sbjct: 113 DKVDPTFPLY 122

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

>gnl|CDD|238721 cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSS--LPGFQVLPLRQFGSWGPDITVKFD 244
           I  DEL + +          L+DVR+P   A     +PG   L       W  D     D
Sbjct: 2   ISVDELAELLAAGE---APVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGD----LD 54

Query: 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 283
             +   V C+HG  S Q+AQ L+  GF  V +++GG  A
Sbjct: 55  RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFEA 93

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. Length = 96

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 65.6 bits (160), Expect = 9e-14
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 201 FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITV----------KFDPQKDTY 250
             ++  L+DVR PEE     +PG   +PL +      ++ +            D  K   
Sbjct: 1   NDEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVV 60

Query: 251 VMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290
           V C  G RS + A  L+  GF+ V+ + GG   ++    P
Sbjct: 61  VYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 14/109 (12%)

Query: 189 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPG-----FQVLPLRQFGSWGPDITVKF 243
            +EL   ++  +      LIDVR PEE A   +PG       +  L +  S   ++  K 
Sbjct: 2   AEELKALLEADDVV----LIDVRSPEEYAKGHIPGAVNIPLSLPSLDKLESELEELGKKL 57

Query: 244 DPQKDTYVMCHHGMRSLQVAQWLQTQ-----GFRRVFNVSGGIHAYATK 287
           D  K   V C  G RS Q A  L        G++ V+ + GG  A+  +
Sbjct: 58  DKDKTIVVYCASGNRSGQAAALLLALILKALGYKNVYVLDGGFEAWKAE 106

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|222266 pfam13616, Rotamase_3, PPIC-type PPIASE domain

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 9/97 (9%)

Query: 89  EILVQHLLVKEDDLNLLSELQRR-------VSQGEDLSDLAVEHSICP-SKGEGGMLGWV 140
            + V+H+LV        +E +         +  G D + LA ++S  P SK +GG LGW 
Sbjct: 15  SVKVRHILVAYAGAQRKAEAKALADSIYNALKGGADFAALAKKYSDDPGSKAQGGDLGWF 74

Query: 141 -RKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVL 176
              GQ+V EF +  FT  + ++   +T FG+H++QV 
Sbjct: 75  TASGQMVKEFIDALFTLKVGEIGVVETPFGYHIIQVT 111

Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline. Length = 114

>gnl|CDD|179537 PRK03095, prsA, peptidylprolyl isomerase; Reviewed

 Score = 67.7 bits (165), Expect = 5e-13
 Identities = 40/133 (30%), Positives = 77/133 (57%), Gaps = 9/133 (6%)

Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVP 147
           EI   H+LVK++      +++  + QG+   +LA ++S    SK +GG LG+   G++V 
Sbjct: 132 EIKASHILVKDEAT--AKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVK 189

Query: 148 EFEEVAFTTPLNKVAR-CKTKFGWHLLQV--LSEREASLLQ---DIQPDELHKKMQDPNF 201
           EFE+ A+    ++V+   K++FG+H+++V  + E E S  Q   DI+ + + KK QD  F
Sbjct: 190 EFEDAAYKLKKDEVSEPVKSQFGYHIIKVTDIKEPEKSFEQSKADIKKELVQKKAQDGEF 249

Query: 202 HKEAQLIDVREPE 214
             +  + ++++ +
Sbjct: 250 MNDLMMKEIKKAD 262

Length = 287

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 7/123 (5%)

Query: 175 VLSE--REASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF 232
           V+S+  ++A+    I P EL K+  D    K+  LIDVREP E  +  +PG Q++P  + 
Sbjct: 275 VVSDEAQQAAAGSTITPREL-KEWLDSG--KKIALIDVREPVEWDIVHIPGAQLIPKSEI 331

Query: 233 GSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 292
            S   +   K    +   + C  G+RS +    L+  GF    ++ GG+ A+A +VDPS+
Sbjct: 332 LS--GEALAKLPQDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGVVAWAKQVDPSL 389

Query: 293 PTY 295
           P Y
Sbjct: 390 PMY 392

Length = 392

>gnl|CDD|223831 COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

 Score = 63.6 bits (154), Expect = 1e-11
 Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 87  DREILVQHLLVKEDDLNLLSELQRRV-SQGEDLSDLAVEHSICPSKGE-GGMLGWVRKGQ 144
            R ILV+    +      L+ L++ V     D ++LA + S  PS    GG+LGW +KGQ
Sbjct: 171 ARHILVK---AEAKAKEALALLKKGVREAKADFAELAKKQSEDPSSKNGGGLLGWNKKGQ 227

Query: 145 LVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQD 186
           LVPEF + AF   + +V+   KT FG+H+++V  +R+A L   
Sbjct: 228 LVPEFRKAAFILKVGEVSAPVKTSFGYHIIKVEKKRDAKLDFP 270

Length = 320

>gnl|CDD|179522 PRK02998, prsA, peptidylprolyl isomerase; Reviewed

 Score = 60.8 bits (147), Expect = 9e-11
 Identities = 39/127 (30%), Positives = 69/127 (54%), Gaps = 8/127 (6%)

Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVP 147
           E+ V H+LVK  D     E++ +V+ GED + LA ++S    SK +GG +     GQ V 
Sbjct: 134 EMKVSHILVK--DEKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVK 191

Query: 148 EFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQD----IQPDELHKKMQDPNFH 202
           EFEE A+     +V+   KT +G+H+++V  ++E     +    I+ D   +++QD    
Sbjct: 192 EFEEAAYKLDAGQVSEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDLEQQRLQDTTGK 251

Query: 203 KEAQLID 209
            + Q+++
Sbjct: 252 WKQQVVN 258

Length = 283

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 246
           +Q  EL     D        LIDVR P+E     + G   +PL +      D   +    
Sbjct: 1   VQWHELDNYRAD-----GVTLIDVRTPQEFEKGHIKGAINIPLDEL----RDRLNELPKD 51

Query: 247 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 286
           K+  V C  G+R    A+ L   GF +V N+ GG   Y+T
Sbjct: 52  KEIIVYCAVGLRGYIAARILTQNGF-KVKNLDGGYKTYST 90

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 7/102 (6%)

Query: 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 243
           +++I P E   +         A LIDVRE  E A     G   +P R F     + T   
Sbjct: 2   IREISPAEARARAAQ-----GAVLIDVREAHERASGQAEGALRIP-RGFLELRIE-THLP 54

Query: 244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285
           D  ++  ++C  G RS   A  L+  G+ RV +V+GG  A+ 
Sbjct: 55  DRDREIVLICASGTRSAHAAATLRELGYTRVASVAGGFSAWK 96

Length = 376

>gnl|CDD|131979 TIGR02933, nifM_nitrog, nitrogen fixation protein NifM

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 8/91 (8%)

Query: 91  LVQHLL--VKEDDLNLLSE----LQRRVSQGEDL-SDLAVEHSICPSKGEGGMLGWVRKG 143
           L +HLL  V EDD   +      + RR+       ++ A+ HS CP+  EGG+LGWV +G
Sbjct: 125 LTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGLLGWVSRG 184

Query: 144 QLVPEFEEVAFTTPLNKV-ARCKTKFGWHLL 173
            L P+ +   F     ++    +++ GWHLL
Sbjct: 185 LLYPQLDAALFQLAEGELSPPIESEIGWHLL 215

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase [Central intermediary metabolism, Nitrogen fixation]. Length = 256

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 207 LIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT-VK-FDPQKDTYVMCHHGMRSLQVAQ 264
           LIDVR P E  ++ +PG  ++PL    + GP +  VK           C  G RS +   
Sbjct: 302 LIDVRNPNEYEIARIPGSVLVPLPDIEN-GPGVEKVKELLNGHRLIAHCKMGGRSAKALG 360

Query: 265 WLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
            L+  G     NV GGI A++ +VDPS+P Y
Sbjct: 361 ILKEAGIEGT-NVKGGITAWSREVDPSVPQY 390

Length = 390

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 205 AQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 264
             LIDVREP E A  S+PG   +PL                  +  V C  G+RS Q   
Sbjct: 275 VTLIDVREPSEFAAYSIPGAHNVPLSAI--REGANPPSVSAGDEVVVYCAAGVRSAQAVA 332

Query: 265 WLQTQGFRRVFNVSGGIHAY 284
            L+  G+  + ++ GGI  +
Sbjct: 333 ILERAGYTGMSSLDGGIEGW 352

Length = 355

>gnl|CDD|234605 PRK00059, prsA, peptidylprolyl isomerase; Provisional

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 26/130 (20%)

Query: 89  EILVQHLLVK-EDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWV--RKGQ 144
            + + H+LVK ED+     ++++R+ +GED + +A E S  P SK +GG LG V      
Sbjct: 196 TMHLAHILVKTEDEAK---KVKKRLDKGEDFAKVAKEVSQDPGSKDKGGDLGDVPYSDSG 252

Query: 145 LVPEFEEVAFTTPLNK---VARCKTKFGWHLLQVLSERE--------------ASLLQDI 187
              EF + A    L +    A  KT+FG+H+++ + ++E                LLQ+ 
Sbjct: 253 YDKEFMDGA--KALKEGEISAPVKTQFGYHIIKAIKKKEYPVKPFDSVKEDIKKQLLQEK 310

Query: 188 QPDELHKKMQ 197
           Q +   KK++
Sbjct: 311 QSEVFKKKIE 320

Length = 336

>gnl|CDD|101162 PRK03002, prsA, peptidylprolyl isomerase; Reviewed

 Score = 52.6 bits (126), Expect = 5e-08
 Identities = 33/123 (26%), Positives = 66/123 (53%), Gaps = 10/123 (8%)

Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVP 147
           EI   H+LV   D N   E+++++  G    +LA + S    SK +GG LG+   G++ P
Sbjct: 136 EIKASHILV--SDENEAKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAP 193

Query: 148 EFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQ-----DPNF 201
           EFE  A+   + +++   K+  G+H++++  +++     +++ D + K ++     DP F
Sbjct: 194 EFETAAYKLKVGQISNPVKSPNGYHIIKLTDKKDLKPYDEVK-DSIRKNLEEERTADPIF 252

Query: 202 HKE 204
            K+
Sbjct: 253 GKK 255

Length = 285

>gnl|CDD|178908 PRK00162, glpE, thiosulfate sulfurtransferase; Validated

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 8/100 (8%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 246
           I  ++ H+K+Q+      A L+D+R+P+  A+   PG   L     G++       FD  
Sbjct: 7   INVEQAHQKLQE----GGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFMRQ--ADFD-- 58

Query: 247 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 286
               VMC+HG  S   AQ+L  QGF  V+++ GG  A+  
Sbjct: 59  TPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFEAWRR 98

Length = 108

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-ALSSLPGFQVLPLRQFGSW----GPDITV 241
           + P++    +  P       L+DVR+P E+     +PG    P      W     P    
Sbjct: 1   LSPEDARALLGSP----GVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKP 56

Query: 242 KFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285
            F   K     C  G RS    + LQ  G + V+N+ GG   + 
Sbjct: 57  AFAEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFKDWK 100

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|238776 cd01518, RHOD_YceA, Member of the Rhodanese Homology Domain superfamily

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 6/102 (5%)

Query: 186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDP 245
            + P E ++ ++DP    E  L+DVR   E  +    G     +  F  +   +    D 
Sbjct: 3   YLSPAEWNELLEDP----EVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDL 58

Query: 246 QKDTYVM--CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285
            K   V+  C  G+R  + + +L+ +GF+ V+ + GGI  Y 
Sbjct: 59  LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGILKYL 100

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins. Length = 101

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 199 PNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF-GSW---GPDITVKF-----DPQKDT 249
           PN H    LIDVREPEE+    +PG   +PL     +      +   K+        K+ 
Sbjct: 10  PNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKEL 69

Query: 250 YVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 280
              C  G+RS   A+  ++ G+  V N  G 
Sbjct: 70  IFYCKAGVRSKAAAELARSLGYENVGNYPGS 100

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|223982 COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 6/104 (5%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 246
           + P + ++ + DP+      +ID R   EVA+    G     +  F  +   +    D  
Sbjct: 115 LSPKDWNELLSDPD----VVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLDLL 170

Query: 247 KDTYVM--CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV 288
           KD  V+  C  G+R  + + W++  GF+ V+++ GGI  Y   V
Sbjct: 171 KDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDV 214

Length = 308

>gnl|CDD|185573 PTZ00356, PTZ00356, peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)

Query: 98  KEDDLNLLSELQRRVSQGEDL-SDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT 156
           KE+ +  L++ + ++  GE    ++A + S C S  +GG LG+  +GQ+   FE+ AF  
Sbjct: 34  KEEAIKELAKWREQIVSGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQMQKPFEDAAFAL 93

Query: 157 PLNKVAR-CKTKFGWHLLQ 174
            + +++    T  G H++ 
Sbjct: 94  KVGEISDIVHTDSGVHIIL 112

Length = 115

>gnl|CDD|234663 PRK00142, PRK00142, putative rhodanese-related sulfurtransferase; Provisional

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 14/108 (12%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLP----LRQFGSWGPDITVK 242
           ++P E+++ + DP    +   ID+R   E  +       + P     R+F  W   +   
Sbjct: 114 LKPKEVNELLDDP----DVVFIDMRNDYEYEIGHFEN-AIEPDIETFREFPPW---VEEN 165

Query: 243 FDPQKDTYVM--CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV 288
            DP KD  V+  C  G+R  + + W++ +GF+ V+ + GGI  Y    
Sbjct: 166 LDPLKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIITYGEDP 213

Length = 314

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 10/101 (9%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVR-EPEEVALSSLPGFQVLPLRQFGSWGPD----ITV 241
           + P E    +Q      +A L+DVR E E   +  +P    +  + +     +      +
Sbjct: 1   LTPAEAWALLQADP---QAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAEL 57

Query: 242 KFDPQKDTYV--MCHHGMRSLQVAQWLQTQGFRRVFNVSGG 280
           +    KD  V  +C  G RS+  A+     GF  V+NV  G
Sbjct: 58  EEKVGKDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEG 98

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|238785 cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 243
           L  I P++  + +        A L+D+REP+E     +PG +++PL Q  S G    +  
Sbjct: 1   LTTISPNDACELLAQ-----GAVLVDIREPDEYLRERIPGARLVPLSQLESEG----LPL 51

Query: 244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285
                    C  GMR+ Q A+ L        + + GG+ A+ 
Sbjct: 52  VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLDAWK 93

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. Length = 99

>gnl|CDD|211994 TIGR04271, ThiI_C_thiazole, thiazole biosynthesis domain

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 20/77 (25%)

Query: 208 IDVREPEEVALS--SLPGFQVLPL------RQFGSWGPDITVKFDPQKDTYVM-CHHG-M 257
           ID+R P+E   +   L G +V+ +       QF             Q  TY++ C  G M
Sbjct: 30  IDIRHPDEQEKAPLELEGVEVIKIPFYKLATQFAEL---------DQDKTYLLYCDKGVM 80

Query: 258 RSLQVAQWLQTQGFRRV 274
             LQ A +L+ QGF  V
Sbjct: 81  SRLQ-ALYLKEQGFTNV 96

The ThiI protein of Escherichia coli is a bifunctional protein in which most of the length of the protein is responsible for sulfurtransferase activity in 4-thiouridine modification to tRNA (EC 2.8.1.4 - see model TIGR00342). This rhodanese-like C-terminal domain, by itself, is able to synthesize the thiazole moiety during thiamin biosynthesis. Note that the invariant Cys residue in this domain is unusual in being required for both activities of the bifunctional ThiI protein. Length = 101

>gnl|CDD|234932 PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 24/122 (19%)

Query: 167 KFGWHLL-QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQ----LIDVREPEEVALSSL 221
           KF + +L +V+ E     +++I  ++  +++ +     E      +ID+R P+E     L
Sbjct: 366 KFDFAILDRVVEEARNIDIREI-AEQTEQEVVEVETVSELPPDDVIIDIRSPDEQEDKPL 424

Query: 222 PGFQVLPLR--------QFGSWGPDITVKFDPQKDTYVM-CHHGMRSLQVAQWLQTQGFR 272
               V            QFG          D  K TY++ C  G+ S   A +L+ QGF 
Sbjct: 425 KLEGVEVKSLPFYKLSTQFG--------DLDQSK-TYLLYCDRGVMSRLQALYLREQGFS 475

Query: 273 RV 274
            V
Sbjct: 476 NV 477

Length = 482

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PRK10770	413	peptidyl-prolyl cis-trans isomerase SurA; Provisio	99.92
PF13616	117	Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3	99.87
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.87
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.86
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.86
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.85
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.84
PRK15441	93	peptidyl-prolyl cis-trans isomerase C; Provisional	99.84
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.84
TIGR02933	256	nifM_nitrog nitrogen fixation protein NifM. Member	99.83
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.83
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.82
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.82
PLN02160	136	thiosulfate sulfurtransferase	99.82
PTZ00356	115	peptidyl-prolyl cis-trans isomerase (PPIase); Prov	99.82
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.81
PF00639	95	Rotamase: PPIC-type PPIASE domain; InterPro: IPR00	99.81
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.81
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.8
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.8
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.8
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.8
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.79
PRK05320	257	rhodanese superfamily protein; Provisional	99.78
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.78
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.78
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.78
KOG3259	163	consensus Peptidyl-prolyl cis-trans isomerase [Pos	99.78
PRK01415	247	hypothetical protein; Validated	99.78
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.78
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.77
PRK03002	285	prsA peptidylprolyl isomerase; Reviewed	99.77
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.76
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.76
PRK02998	283	prsA peptidylprolyl isomerase; Reviewed	99.76
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.76
PRK04405	298	prsA peptidylprolyl isomerase; Provisional	99.76
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.76
PRK10770	413	peptidyl-prolyl cis-trans isomerase SurA; Provisio	99.75
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.75
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.75
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.74
PRK07411	390	hypothetical protein; Validated	99.74
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.74
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.73
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.73
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.73
PRK03095	287	prsA peptidylprolyl isomerase; Reviewed	99.73
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.72
KOG3258	133	consensus Parvulin-like peptidyl-prolyl cis-trans	99.71
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.71
PRK00059	336	prsA peptidylprolyl isomerase; Provisional	99.7
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.69
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.66
PRK10788	623	periplasmic folding chaperone; Provisional	99.64
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.63
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.63
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.62
PRK12450	309	foldase protein PrsA; Reviewed	99.62
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.61
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.61
PRK01326	310	prsA foldase protein PrsA; Reviewed	99.6
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.59
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.59
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.59
COG1054	308	Predicted sulfurtransferase [General function pred	99.58
TIGR02925	232	cis_trans_EpsD peptidyl-prolyl cis-trans isomerase	99.57
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.57
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.56
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.55
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.49
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.48
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.29
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.27
COG0760	320	SurA Parvulin-like peptidyl-prolyl isomerase [Post	99.19
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.14
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	98.88
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	98.43
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.16
PF13145	121	Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2	98.0
PRK10788	623	periplasmic folding chaperone; Provisional	97.95
PF00639	95	Rotamase: PPIC-type PPIASE domain; InterPro: IPR00	97.85
PF13616	117	Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3	97.76
KOG3259	163	consensus Peptidyl-prolyl cis-trans isomerase [Pos	97.61
KOG3258	133	consensus Parvulin-like peptidyl-prolyl cis-trans	97.36
PTZ00356	115	peptidyl-prolyl cis-trans isomerase (PPIase); Prov	97.21
PRK15441	93	peptidyl-prolyl cis-trans isomerase C; Provisional	96.96
COG2603	334	Predicted ATPase [General function prediction only	96.72
TIGR02933	256	nifM_nitrog nitrogen fixation protein NifM. Member	96.65
PRK04405	298	prsA peptidylprolyl isomerase; Provisional	96.44
PRK03095	287	prsA peptidylprolyl isomerase; Reviewed	95.96
PRK02998	283	prsA peptidylprolyl isomerase; Reviewed	95.51
KOG1093	725	consensus Predicted protein kinase (contains TBC a	95.0
PRK03002	285	prsA peptidylprolyl isomerase; Reviewed	94.93
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	94.43
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	93.42
PRK01326	310	prsA foldase protein PrsA; Reviewed	92.93
PRK12450	309	foldase protein PrsA; Reviewed	92.85
PRK00059	336	prsA peptidylprolyl isomerase; Provisional	91.39
COG0760	320	SurA Parvulin-like peptidyl-prolyl isomerase [Post	88.37
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	86.53

>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional

Probab=99.92  E-value=4e-26  Score=213.79  Aligned_cols=185  Identities=16%  Similarity=0.209  Sum_probs=150.3

Q ss_pred             hhhhhccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCCCC-----
Q 022540           11 PVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPG-----   84 (295)
Q Consensus        11 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-----   84 (295)
                      ..+.+.++......+.++..+..+ ..|+.+ +.||+++. +.+||.+||+..+.+.++|+.+.|.+++++++.+     
T Consensus       168 ~~s~~~~~~~~~~a~~l~~~l~~g-~~F~~lA~~yS~~~~-a~~gGdlg~~~~~~l~~~~~~~~~~l~~G~is~Pi~t~~  245 (413)
T PRK10770        168 NPTQDQVDEAESQARSIVDQARNG-ADFGKLAIAYSADQQ-ALKGGQMGWGRIQELPGLFAQALSTAKKGDIVGPIRSGV  245 (413)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCcc-cccCCcCCccccccccHHHHHHHHhCCCCCCCCcEECCC
Confidence            344555555566666777777665 599999 99999986 7899999999999999999999999888776541     


Q ss_pred             ---------CC-------CccEEEeeEEeccc-------hHHHHHHHHHHhcCCC-cHHHHHHHhCCCC-CccCCCcccc
Q 022540           85 ---------GG-------DREILVQHLLVKED-------DLNLLSELQRRVSQGE-DLSDLAVEHSICP-SKGEGGMLGW  139 (295)
Q Consensus        85 ---------~~-------~~~~~~~hIl~~~~-------~~~~a~~~~~~i~~g~-~F~~~a~~~S~~~-~~~~gG~lg~  139 (295)
                               ..       .++++++|||+++.       +++++++++++|.+|. +|+++|++||+|+ ++.+||+|||
T Consensus       246 GyhIikl~~~~~~~~~~~~~e~~~~hIli~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~~A~~~S~d~~s~~~gG~lg~  325 (413)
T PRK10770        246 GFHILKVNDLRGESQNISVTEVHARHILLKPSPIMTDEQARAKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGW  325 (413)
T ss_pred             ceEEEEEeeeccccccchHHhhhhhheEECCCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCCChHhhCCcCCc
Confidence                     11       23699999999863       4567899999999996 9999999999998 8999999999


Q ss_pred             ccCCCCcHHHHHHHHhCCCCccc-cccccceeEEEeeehhhhhhhcccccchhhhhhcc
Q 022540          140 VRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQ  197 (295)
Q Consensus       140 ~~~~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~~~~~~~~~~is~~el~~~L~  197 (295)
                      +..+.++|+|..++++|++|++| |+.+++|||++++++.+..........+++++.|.
T Consensus       326 ~~~~~~~~~~~~~~~~l~~GeiS~pv~t~~g~~ii~v~~~~~~~~~~~~~r~~~~~~l~  384 (413)
T PRK10770        326 ATPDIFDPAFRDALMRLNKGQISAPVHSSFGWHLIELLDTRQVDKTDAAQKDRAYRMLF  384 (413)
T ss_pred             cCccccCHHHHHHHHcCCCCCcCCcEEcCCeEEEEEEeecccCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999 99999999999999876543322233334444443

>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A

Probab=99.87  E-value=2.3e-22  Score=155.62  Aligned_cols=95  Identities=29%  Similarity=0.565  Sum_probs=84.4

Q ss_pred             CCCccEEEeeEEeccc---------hHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCcccccc-CCCCcHHHHHHH
Q 022540           85 GGDREILVQHLLVKED---------DLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVR-KGQLVPEFEEVA  153 (295)
Q Consensus        85 ~~~~~~~~~hIl~~~~---------~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~-~~~~~~~~~~~~  153 (295)
                      ..+++|+++||+|+..         ++++|++|+++|++|+||++||++||+|+ ++.+||++||+. .+.++++|.+++
T Consensus        11 ~~~~~v~~~~I~i~~~~~~~~~~~~ak~~a~~i~~~l~~G~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~   90 (117)
T PF13616_consen   11 QAPDEVKVSHILIPVPDASSRSKEEAKKKADSILKQLKSGADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAA   90 (117)
T ss_dssp             GE--EEEEEEEEESS-----------HHHHHHHHHHHHCTCCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHH
T ss_pred             CCcCeEEEEEEEEeccccccchhHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHH
Confidence            4567999999999963         37789999999999999999999999998 799999999999 999999999999


Q ss_pred             HhCCCCccc-cccccceeEEEeeehhh
Q 022540          154 FTTPLNKVA-RCKTKFGWHLLQVLSER  179 (295)
Q Consensus       154 ~~l~~G~vs-pv~~~~G~~ii~v~~~~  179 (295)
                      |+|++|++| |+++++||||+++.+++
T Consensus        91 ~~l~~G~is~~v~s~~G~hIikv~drk  117 (117)
T PF13616_consen   91 FSLKVGEISGPVESPNGYHIIKVTDRK  117 (117)
T ss_dssp             HHS-TTECTCEEEETTEEEEEEEEEE-
T ss_pred             HcCCCCCCCCeEEECCEEEEEEEEeeC
Confidence            999999999 99999999999998753

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=1.8e-22  Score=157.64  Aligned_cols=109  Identities=28%  Similarity=0.494  Sum_probs=92.9

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcccc------ccCCCCCcEEEEeCCCh
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT------VKFDPQKDTYVMCHHGM  257 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~------~~~~~~~~ivv~C~~g~  257 (295)
                      ...++++++.+.+.+.   .+..|||+|++.||..||||||+|||+..+..+...+.      ..++++++|++||++|.
T Consensus         7 ~~~is~~el~~~~~~~---~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~   83 (122)
T cd01526           7 EERVSVKDYKNILQAG---KKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAELKSLQELPLDNDKDSPIYVVCRRGN   83 (122)
T ss_pred             ccccCHHHHHHHHhCC---CCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhhhhhhhhcccccCCCCcEEEECCCCC
Confidence            3457888998888652   45789999999999999999999999987765432221      12368899999999999


Q ss_pred             hHHHHHHHHHHcCC-CceEEccccHhhcccccCCCCCCC
Q 022540          258 RSLQVAQWLQTQGF-RRVFNVSGGIHAYATKVDPSIPTY  295 (295)
Q Consensus       258 rs~~aa~~L~~~G~-~~v~~l~GG~~~W~~~~~p~~p~~  295 (295)
                      ||..++..|+..|| ++|+.++||+.+|..+.++.+|.|
T Consensus        84 rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~~~~~  122 (122)
T cd01526          84 DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFPLY  122 (122)
T ss_pred             cHHHHHHHHHHcCCccceeeecchHHHHHHHhCccCCCC
Confidence            99999999999999 799999999999999999999987

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=2.4e-22  Score=151.60  Aligned_cols=96  Identities=24%  Similarity=0.465  Sum_probs=80.6

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcccc--ccCCCCCcEEEEeCCChhHHHHH
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT--VKFDPQKDTYVMCHHGMRSLQVA  263 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~--~~~~~~~~ivv~C~~g~rs~~aa  263 (295)
                      .++++++.+.+.+    ++..|||||++.||..||||||+|||+..+......+.  ..++++++|||||++|.||..++
T Consensus         3 ~is~~~l~~~~~~----~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~a~   78 (101)
T cd01518           3 YLSPAEWNELLED----PEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFPFWLDENLDLLKGKKVLMYCTGGIRCEKAS   78 (101)
T ss_pred             cCCHHHHHHHHcC----CCEEEEEcCChhhhhcCEeccccCCCcccHhHhHHHHHhhhhhcCCCEEEEECCCchhHHHHH
Confidence            3678888888875    46789999999999999999999999987643211111  12368899999999999999999


Q ss_pred             HHHHHcCCCceEEccccHhhcc
Q 022540          264 QWLQTQGFRRVFNVSGGIHAYA  285 (295)
Q Consensus       264 ~~L~~~G~~~v~~l~GG~~~W~  285 (295)
                      .+|+..||++|++|+||+.+|.
T Consensus        79 ~~L~~~G~~~v~~l~GG~~~W~  100 (101)
T cd01518          79 AYLKERGFKNVYQLKGGILKYL  100 (101)
T ss_pred             HHHHHhCCcceeeechhHHHHh
Confidence            9999999999999999999996

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.86  E-value=4.3e-22  Score=152.30  Aligned_cols=100  Identities=21%  Similarity=0.232  Sum_probs=83.1

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  263 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa  263 (295)
                      ...++++++.+.+.+.   ....+||+|++.||..||||||+|+|+..+..+...+.  .+++++|||||++|.||..++
T Consensus         9 ~~~i~~~~l~~~~~~~---~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~--~~~~~~ivv~C~~G~rs~~a~   83 (109)
T cd01533           9 TPSVSADELAALQARG---APLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELA--PDPRTPIVVNCAGRTRSIIGA   83 (109)
T ss_pred             CCcCCHHHHHHHHhcC---CCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcC--CCCCCeEEEECCCCchHHHHH
Confidence            3457888999888753   34689999999999999999999999987754322221  146789999999999999999


Q ss_pred             HHHHHcCCCc-eEEccccHhhccccc
Q 022540          264 QWLQTQGFRR-VFNVSGGIHAYATKV  288 (295)
Q Consensus       264 ~~L~~~G~~~-v~~l~GG~~~W~~~~  288 (295)
                      ..|+..||++ |++|+||+.+|...|
T Consensus        84 ~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          84 QSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             HHHHHCCCCcceeEecCCHHHHHhcC
Confidence            9999999988 999999999998654

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.85  E-value=7.7e-22  Score=148.51  Aligned_cols=95  Identities=21%  Similarity=0.305  Sum_probs=80.3

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC----ccccccCCCCCcEEEEeCCChhHHHH
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG----PDITVKFDPQKDTYVMCHHGMRSLQV  262 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~----~~~~~~~~~~~~ivv~C~~g~rs~~a  262 (295)
                      ++++++.+++.+.   ....|||||++.||..||||||+|+|+..+....    ......++++++|||||.+|.||..+
T Consensus         1 is~~el~~~l~~~---~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~a   77 (100)
T cd01523           1 LDPEDLYARLLAG---QPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEIEEDILDQLPDDQEVTVICAKEGSSQFV   77 (100)
T ss_pred             CCHHHHHHHHHcC---CCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHhhHHHHhhCCCCCeEEEEcCCCCcHHHH
Confidence            3567888888763   3578999999999999999999999998764321    12234568899999999999999999


Q ss_pred             HHHHHHcCCCceEEccccHhhcc
Q 022540          263 AQWLQTQGFRRVFNVSGGIHAYA  285 (295)
Q Consensus       263 a~~L~~~G~~~v~~l~GG~~~W~  285 (295)
                      +..|++.||+ +++|.||+.+|.
T Consensus        78 a~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          78 AELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             HHHHHHcCce-eEEeCCcHHhhc
Confidence            9999999998 999999999996

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.84  E-value=3.8e-21  Score=144.41  Aligned_cols=96  Identities=27%  Similarity=0.474  Sum_probs=84.5

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHH
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQW  265 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~  265 (295)
                      .++++++.+.+..     +..|||+|++.+|..||||||+|+|+..+...    ...++++++||+||++|.+|..++..
T Consensus         3 ~i~~~el~~~~~~-----~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~----~~~~~~~~~iv~~c~~g~~s~~~~~~   73 (99)
T cd01527           3 TISPNDACELLAQ-----GAVLVDIREPDEYLRERIPGARLVPLSQLESE----GLPLVGANAIIFHCRSGMRTQQNAER   73 (99)
T ss_pred             ccCHHHHHHHHHC-----CCEEEECCCHHHHHhCcCCCCEECChhHhccc----ccCCCCCCcEEEEeCCCchHHHHHHH
Confidence            4778899888875     26899999999999999999999999877543    12367899999999999999999999


Q ss_pred             HHHcCCCceEEccccHhhcccccCC
Q 022540          266 LQTQGFRRVFNVSGGIHAYATKVDP  290 (295)
Q Consensus       266 L~~~G~~~v~~l~GG~~~W~~~~~p  290 (295)
                      |.+.||.+|+++.||+.+|...+.|
T Consensus        74 L~~~g~~~v~~l~gG~~~W~~~~~~   98 (99)
T cd01527          74 LAAISAGEAYVLEGGLDAWKAAGLP   98 (99)
T ss_pred             HHHcCCccEEEeeCCHHHHHHCcCC
Confidence            9999999999999999999988776

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional

Probab=99.84  E-value=5.8e-21  Score=141.62  Aligned_cols=89  Identities=40%  Similarity=0.758  Sum_probs=83.5

Q ss_pred             ccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCCccc-cccc
Q 022540           88 REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT  166 (295)
Q Consensus        88 ~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~  166 (295)
                      .++.++||++..++.  |++++++|++|++|+++|++||+|+++..||+|||+..++++++|.++++.|++|++| |+++
T Consensus         3 ~~~~~~~I~~~~~~~--A~~i~~~l~~g~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~Pi~t   80 (93)
T PRK15441          3 KTAAALHILVKEEKL--ALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHT   80 (93)
T ss_pred             CceEEEEEEECCHHH--HHHHHHHHHCCCCHHHHHHHhCCCchhhcCccceeecccccCHHHHHHHHhCCCCCcCCcEEc
Confidence            468999999987766  9999999999999999999999999777899999999999999999999999999999 9999


Q ss_pred             cceeEEEeeehh
Q 022540          167 KFGWHLLQVLSE  178 (295)
Q Consensus       167 ~~G~~ii~v~~~  178 (295)
                      ++|||+++++++
T Consensus        81 ~~G~hIlkv~~r   92 (93)
T PRK15441         81 QFGYHIIKVLYR   92 (93)
T ss_pred             CCEEEEEEEEec
Confidence            999999999864

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.84  E-value=3e-21  Score=147.38  Aligned_cols=101  Identities=31%  Similarity=0.557  Sum_probs=88.4

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  263 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa  263 (295)
                      +..++++++.+.+.+    ....+||+|++.+|..||||||+|+|+..|..+    +..++++++|+|||.+|.+|..++
T Consensus         4 ~~~is~~el~~~l~~----~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~~----~~~~~~~~~ivv~c~~g~~s~~a~   75 (108)
T PRK00162          4 FECINVEQAHQKLQE----GGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAF----MRQADFDTPVMVMCYHGNSSQGAA   75 (108)
T ss_pred             ccccCHHHHHHHHHc----CCCEEEEcCCHHHHhcCCCCCCeECCHHHHHHH----HHhcCCCCCEEEEeCCCCCHHHHH
Confidence            456888999998865    356899999999999999999999999877543    334678999999999999999999


Q ss_pred             HHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          264 QWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       264 ~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ..|+..||++|++++||+.+|...+.|..
T Consensus        76 ~~L~~~G~~~v~~l~GG~~~w~~~~~~~~  104 (108)
T PRK00162         76 QYLLQQGFDVVYSIDGGFEAWRRTFPAEV  104 (108)
T ss_pred             HHHHHCCchheEEecCCHHHHHhcCCCcc
Confidence            99999999999999999999999888754

>TIGR02933 nifM_nitrog nitrogen fixation protein NifM

Probab=99.83  E-value=2.9e-21  Score=169.28  Aligned_cols=126  Identities=25%  Similarity=0.450  Sum_probs=99.1

Q ss_pred             ccChHhhh-ccccCCCCCCCCCCCccEEEeeEEeccc------hHHHHHHHHHHhcCC-CcHHHHHHHhCCCCCccCCCc
Q 022540           65 SFTSPKAA-SFSSGTEGSSPGGGDREILVQHLLVKED------DLNLLSELQRRVSQG-EDLSDLAVEHSICPSKGEGGM  136 (295)
Q Consensus        65 ~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~hIl~~~~------~~~~a~~~~~~i~~g-~~F~~~a~~~S~~~~~~~gG~  136 (295)
                      .|++.|.. +|..+..   .+..++.++++|||++.+      ++++|++++++|++| .+|+++|++||+|+++.+||+
T Consensus       101 ~ise~ei~~yy~~~~~---~~~~~e~~~~~hIli~~~~~~~~~a~~~a~~l~~~l~~g~~~F~~lA~~~S~~~sa~~GGd  177 (256)
T TIGR02933       101 QPDDADVEAWYRRHAE---QFKRPEQRLTRHLLLTVNEDDREAVRTRILAILRRLRGKPAAFAEQAMRHSHCPTAMEGGL  177 (256)
T ss_pred             CCCHHHHHHHHHHHHH---hcCCCCeEEEEEEEEECCcccHHHHHHHHHHHHHHHHhCcccHHHHHHHhCCCCccccCCc
Confidence            44555553 3333332   234567788999999853      245678899999987 599999999999998899999


Q ss_pred             cccccCCCCcHHHHHHHHhCCCCccc-cccccceeEEEeeehhhhhhhcccccchhhhhhc
Q 022540          137 LGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREASLLQDIQPDELHKKM  196 (295)
Q Consensus       137 lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~~~~~~~~~~is~~el~~~L  196 (295)
                      |||+..+.++|.|.+++++|++|++| ||.+++||||+++.+.++...   .+.++++..+
T Consensus       178 lG~~~~~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl~~~~~~~~---~~~eevk~~I  235 (256)
T TIGR02933       178 LGWVSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLLCEAIRPARP---LTLEEALPRA  235 (256)
T ss_pred             cCCcCCCccChHHHHHHHcCCCCCcCCceeeCCeEEEEEEeeecCCCC---CCHHHHHHHH
Confidence            99999999999999999999999999 999999999999998776432   3444444444

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.83  E-value=5.7e-21  Score=142.43  Aligned_cols=94  Identities=27%  Similarity=0.395  Sum_probs=76.9

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHH
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL  266 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L  266 (295)
                      ++++++.+++.+..  ....+||||++.||..||||||+|+|+..+......+..  .++++||+||.+|.||..++.+|
T Consensus         1 is~~~l~~~~~~~~--~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~~~~~--~~~~~iv~~c~~G~rs~~aa~~L   76 (95)
T cd01534           1 IGAAELARWAAEGD--RTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAP--VRGARIVLADDDGVRADMTASWL   76 (95)
T ss_pred             CCHHHHHHHHHcCC--CCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHHHhcc--cCCCeEEEECCCCChHHHHHHHH
Confidence            35678888886531  246799999999999999999999999876543222211  25789999999999999999999


Q ss_pred             HHcCCCceEEccccHhhcc
Q 022540          267 QTQGFRRVFNVSGGIHAYA  285 (295)
Q Consensus       267 ~~~G~~~v~~l~GG~~~W~  285 (295)
                      ...||+ |++++||+.+|.
T Consensus        77 ~~~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          77 AQMGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             HHcCCE-EEEecCcHHHhc
Confidence            999998 999999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.82  E-value=1.2e-20  Score=142.26  Aligned_cols=99  Identities=46%  Similarity=0.813  Sum_probs=81.7

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHH
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL  266 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L  266 (295)
                      ++++++.+.+....  ...++||+|++.||..+|||||+|+|+..+..+...+.. .+++++||+||++|.||..++..|
T Consensus         2 i~~~~l~~~~~~~~--~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~~~~~~~-~~~~~~vv~~c~~g~rs~~~~~~l   78 (101)
T cd01528           2 ISVAELAEWLADER--EEPVLIDVREPEELEIAFLPGFLHLPMSEIPERSKELDS-DNPDKDIVVLCHHGGRSMQVAQWL   78 (101)
T ss_pred             CCHHHHHHHHhcCC--CCCEEEECCCHHHHhcCcCCCCEecCHHHHHHHHHHhcc-cCCCCeEEEEeCCCchHHHHHHHH
Confidence            56778888887521  246899999999999999999999999877554222211 146899999999999999999999


Q ss_pred             HHcCCCceEEccccHhhccccc
Q 022540          267 QTQGFRRVFNVSGGIHAYATKV  288 (295)
Q Consensus       267 ~~~G~~~v~~l~GG~~~W~~~~  288 (295)
                      .+.||++|++++||+.+|....
T Consensus        79 ~~~G~~~v~~l~GG~~~w~~~~  100 (101)
T cd01528          79 LRQGFENVYNLQGGIDAWSLEV  100 (101)
T ss_pred             HHcCCccEEEecCCHHHHhhhc
Confidence            9999999999999999997653

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.82  E-value=1.3e-20  Score=142.94  Aligned_cols=104  Identities=26%  Similarity=0.438  Sum_probs=85.4

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCC----CccccccC-----CCCCcEEEEeC
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW----GPDITVKF-----DPQKDTYVMCH  254 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~----~~~~~~~~-----~~~~~ivv~C~  254 (295)
                      ...++.++++.++..    .+..+||||+++||..||+|.+||||+......    .++++..+     +.|+.|||+|.
T Consensus        22 ~~sv~~~qvk~L~~~----~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~   97 (136)
T KOG1530|consen   22 PQSVSVEQVKNLLQH----PDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCA   97 (136)
T ss_pred             cEEEEHHHHHHHhcC----CCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEec
Confidence            344778889999887    458999999999999999999999999533221    12222221     35679999999


Q ss_pred             CChhHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          255 HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       255 ~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      +|.||..|...|..+||+||.++.|||.+|...+.|.
T Consensus        98 SG~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~  134 (136)
T KOG1530|consen   98 SGVRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPK  134 (136)
T ss_pred             cCcchhHHHHHHHHcCcccccccCccHHHHHHccCCC
Confidence            9999999999999999999999999999999988775

>PLN02160 thiosulfate sulfurtransferase

Probab=99.82  E-value=3.1e-20  Score=147.36  Aligned_cols=104  Identities=22%  Similarity=0.328  Sum_probs=84.5

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCc--cccCccccCCC--C------ccccccCCCCCcEEEEe
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGF--QVLPLRQFGSW--G------PDITVKFDPQKDTYVMC  253 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgA--inip~~~l~~~--~------~~~~~~~~~~~~ivv~C  253 (295)
                      ...++++++.+++++     +..|||||++.||..||||||  +|+|+..+...  .      ..+...++++++||+||
T Consensus        14 ~~~i~~~e~~~~~~~-----~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC   88 (136)
T PLN02160         14 VVSVDVSQAKTLLQS-----GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGC   88 (136)
T ss_pred             eeEeCHHHHHHHHhC-----CCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEEC
Confidence            445778888888865     347999999999999999999  89997433110  0      01112247889999999


Q ss_pred             CCChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          254 HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       254 ~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ++|.||..++..|...||++|+++.||+.+|...+.|..
T Consensus        89 ~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  127 (136)
T PLN02160         89 QSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPIN  127 (136)
T ss_pred             CCcHHHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999864

>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

Probab=99.82  E-value=6.9e-20  Score=141.16  Aligned_cols=91  Identities=27%  Similarity=0.529  Sum_probs=83.3

Q ss_pred             CCccEEEeeEEeccch--------------------HHHHHHHHHHhcCCC-cHHHHHHHhCCCCCccCCCccccccCCC
Q 022540           86 GDREILVQHLLVKEDD--------------------LNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWVRKGQ  144 (295)
Q Consensus        86 ~~~~~~~~hIl~~~~~--------------------~~~a~~~~~~i~~g~-~F~~~a~~~S~~~~~~~gG~lg~~~~~~  144 (295)
                      .+++|+++|||+....                    ++++++|+++|++|. +|+++|++||+++++.+||++||+..+.
T Consensus         2 ~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~~~~~~gG~lG~~~~~~   81 (115)
T PTZ00356          2 EGDTVRAAHLLIKHTGSRNPVSRRTGKPVTRSKEEAIKELAKWREQIVSGEKTFEEIARQRSDCGSAAKGGDLGFFGRGQ   81 (115)
T ss_pred             CCcEEEEEEEEEecCCCcCcccccccccccccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCCchhhcCccceeEcccc
Confidence            4689999999999532                    457899999999996 9999999999988888999999999999


Q ss_pred             CcHHHHHHHHhCCCCccc-cccccceeEEEeee
Q 022540          145 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  176 (295)
Q Consensus       145 ~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~  176 (295)
                      ++++|.+++++|++|++| |+++++|||++++.
T Consensus        82 L~~~~~~a~~~L~~Geis~Pi~t~~G~hIlk~~  114 (115)
T PTZ00356         82 MQKPFEDAAFALKVGEISDIVHTDSGVHIILRL  114 (115)
T ss_pred             cCHHHHHHHHcCCCCCCCCcEEECCEEEEEEEc
Confidence            999999999999999999 99999999999875

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.81  E-value=5.2e-20  Score=139.65  Aligned_cols=96  Identities=17%  Similarity=0.236  Sum_probs=77.3

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCC--------CCCcEEEEeCCChh
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD--------PQKDTYVMCHHGMR  258 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~--------~~~~ivv~C~~g~r  258 (295)
                      ++++++++.+.+..  ....|||+|++.||..||||||+|+|+..+...... ...++        .+++|||||.+|.+
T Consensus         1 is~~~l~~~l~~~~--~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~-~~~~~~~~~~~~~~~~~vv~~c~~g~~   77 (105)
T cd01525           1 ISVYDVIRLLDNSP--AKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGE-LEQLPTVPRLENYKGKIIVIVSHSHKH   77 (105)
T ss_pred             CCHHHHHHHHhCCC--CCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccc-cccccchHHHHhhcCCeEEEEeCCCcc
Confidence            45678888887521  357899999999999999999999999765321111 11122        47899999999999


Q ss_pred             HHHHHHHHHHcCCCceEEccccHhhcc
Q 022540          259 SLQVAQWLQTQGFRRVFNVSGGIHAYA  285 (295)
Q Consensus       259 s~~aa~~L~~~G~~~v~~l~GG~~~W~  285 (295)
                      |..++..|+..||++|++|+||+.+|+
T Consensus        78 s~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          78 AALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence            999999999999999999999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5

Probab=99.81  E-value=1.3e-19  Score=135.14  Aligned_cols=84  Identities=37%  Similarity=0.620  Sum_probs=77.5

Q ss_pred             eEEeccc--------hHHHHHHHHHHhcCCCc-HHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCCCCccc-
Q 022540           94 HLLVKED--------DLNLLSELQRRVSQGED-LSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-  162 (295)
Q Consensus        94 hIl~~~~--------~~~~a~~~~~~i~~g~~-F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-  162 (295)
                      |||++.+        .+++|++++++|++|++ |+++|++||++. ++.+||++||+..++++++|.+++++|++|++| 
T Consensus         1 HIl~~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs~   80 (95)
T PF00639_consen    1 HILVKPPPSDEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVSK   80 (95)
T ss_dssp             EEEEESTTSCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBEE
T ss_pred             CEEEECCCchhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcCC
Confidence            9999964        26789999999999985 999999999665 999999999999999999999999999999999 


Q ss_pred             cccccceeEEEeeeh
Q 022540          163 RCKTKFGWHLLQVLS  177 (295)
Q Consensus       163 pv~~~~G~~ii~v~~  177 (295)
                      |+.+++||||+++.+
T Consensus        81 pi~t~~G~~Ii~v~d   95 (95)
T PF00639_consen   81 PIETDNGYHIIKVED   95 (95)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             CEEECCEEEEEEEEC
Confidence            999999999998863

2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.81  E-value=4.4e-20  Score=137.65  Aligned_cols=92  Identities=33%  Similarity=0.538  Sum_probs=80.2

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHhh--cCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHH
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL--SSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  264 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~--ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~  264 (295)
                      ++++++.+.+.+.   .+..+||+|++.+|..  ||||||+|+|+..+..+    ...++++++|||||.+|.+|..++.
T Consensus         2 i~~~~~~~~~~~~---~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~~----~~~~~~~~~ivv~c~~g~~s~~a~~   74 (96)
T cd01444           2 ISVDELAELLAAG---EAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDDW----LGDLDRDRPVVVYCYHGNSSAQLAQ   74 (96)
T ss_pred             cCHHHHHHHHhcC---CCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHHH----HhhcCCCCCEEEEeCCCChHHHHHH
Confidence            4567787777652   3578999999999999  99999999999877543    3446889999999999999999999


Q ss_pred             HHHHcCCCceEEccccHhhcc
Q 022540          265 WLQTQGFRRVFNVSGGIHAYA  285 (295)
Q Consensus       265 ~L~~~G~~~v~~l~GG~~~W~  285 (295)
                      .|+..||++|++++||+.+|.
T Consensus        75 ~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          75 ALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             HHHHcCCceEEEcCCCHHHhc
Confidence            999999999999999999995

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.80  E-value=6.7e-20  Score=138.40  Aligned_cols=97  Identities=25%  Similarity=0.480  Sum_probs=78.9

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHH-hhcCCCCccccCccccCCCCcc----ccccCCCCCcEEEEeCCChhHHH
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-ALSSLPGFQVLPLRQFGSWGPD----ITVKFDPQKDTYVMCHHGMRSLQ  261 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~-~~ghIpgAinip~~~l~~~~~~----~~~~~~~~~~ivv~C~~g~rs~~  261 (295)
                      ++++++.+.+.+    .+.+|||+|++.+| ..||||||+|+|+..+..+...    ....++++++|||||.+|.+|..
T Consensus         1 is~~el~~~~~~----~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~   76 (103)
T cd01447           1 LSPEDARALLGS----PGVLLVDVRDPRELERTGMIPGAFHAPRGMLEFWADPDSPYHKPAFAEDKPFVFYCASGWRSAL   76 (103)
T ss_pred             CCHHHHHHHHhC----CCeEEEECCCHHHHHhcCCCCCcEEcccchhhhhcCccccccccCCCCCCeEEEEcCCCCcHHH
Confidence            356778877765    45789999999998 5799999999998766432211    11235789999999999999999


Q ss_pred             HHHHHHHcCCCceEEccccHhhcccc
Q 022540          262 VAQWLQTQGFRRVFNVSGGIHAYATK  287 (295)
Q Consensus       262 aa~~L~~~G~~~v~~l~GG~~~W~~~  287 (295)
                      ++..|+..||++|++++||+.+|...
T Consensus        77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~  102 (103)
T cd01447          77 AGKTLQDMGLKPVYNIEGGFKDWKEA  102 (103)
T ss_pred             HHHHHHHcChHHhEeecCcHHHHhhc
Confidence            99999999999999999999999754

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.80  E-value=6.1e-20  Score=135.48  Aligned_cols=88  Identities=31%  Similarity=0.505  Sum_probs=76.9

Q ss_pred             cchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHH
Q 022540          188 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQ  267 (295)
Q Consensus       188 s~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~  267 (295)
                      +++++.+++.     ++.++||+|++.+|..||||||+|+|+..+..+    ...++++++||+||.+|.++..++..|+
T Consensus         2 ~~~e~~~~~~-----~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~----~~~~~~~~~vvl~c~~g~~a~~~a~~L~   72 (90)
T cd01524           2 QWHELDNYRA-----DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR----LNELPKDKEIIVYCAVGLRGYIAARILT   72 (90)
T ss_pred             CHHHHHHHhc-----CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH----HHhcCCCCcEEEEcCCChhHHHHHHHHH
Confidence            4677888774     456899999999999999999999999877543    3346788999999999999999999999


Q ss_pred             HcCCCceEEccccHhhcc
Q 022540          268 TQGFRRVFNVSGGIHAYA  285 (295)
Q Consensus       268 ~~G~~~v~~l~GG~~~W~  285 (295)
                      ..|| +|++|+||+.+|.
T Consensus        73 ~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          73 QNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             HCCC-CEEEecCCHHHhc
Confidence            9999 8999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.80  E-value=8.4e-20  Score=138.71  Aligned_cols=94  Identities=28%  Similarity=0.412  Sum_probs=76.9

Q ss_pred             cchhhhhhcc-CCCccccceeecCcchhHHhhcCCCCccccCccccCCCCc----cccc-----cCCCCCcEEEEeCCCh
Q 022540          188 QPDELHKKMQ-DPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP----DITV-----KFDPQKDTYVMCHHGM  257 (295)
Q Consensus       188 s~~el~~~L~-~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~----~~~~-----~~~~~~~ivv~C~~g~  257 (295)
                      +++++.++++ .    ....|||+|++.||..||||||+|+|+..+.....    .+..     ..+++++||+||++|.
T Consensus         2 ~~~~~~~~l~~~----~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~   77 (106)
T cd01519           2 SFEEVKNLPNPH----PNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEFEKKYGFPKPSKDKELIFYCKAGV   77 (106)
T ss_pred             cHHHHHHhcCCC----CCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcH
Confidence            4567777776 4    46789999999999999999999999977643210    1111     1356899999999999


Q ss_pred             hHHHHHHHHHHcCCCceEEccccHhhcc
Q 022540          258 RSLQVAQWLQTQGFRRVFNVSGGIHAYA  285 (295)
Q Consensus       258 rs~~aa~~L~~~G~~~v~~l~GG~~~W~  285 (295)
                      +|..++..|..+||++|++++||+.+|.
T Consensus        78 ~s~~~~~~l~~~G~~~v~~~~Gg~~~W~  105 (106)
T cd01519          78 RSKAAAELARSLGYENVGNYPGSWLDWA  105 (106)
T ss_pred             HHHHHHHHHHHcCCccceecCCcHHHHc
Confidence            9999999999999999999999999996

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.80  E-value=1.1e-19  Score=135.81  Aligned_cols=83  Identities=23%  Similarity=0.276  Sum_probs=70.5

Q ss_pred             ccceeecCcchhHHhhcCCCCccccCccccCCCCccc--cccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEcccc
Q 022540          203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG  280 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~--~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG  280 (295)
                      +...|||+|++.+|..||||||+|+|+..+......+  +...+++++||+||++|.+|..++.+|+..||++|++|+||
T Consensus        11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG   90 (96)
T cd01529          11 PGTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGG   90 (96)
T ss_pred             CCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCCHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCC
Confidence            4678999999999999999999999987664332221  12246889999999999999999999999999999999999


Q ss_pred             Hhhcc
Q 022540          281 IHAYA  285 (295)
Q Consensus       281 ~~~W~  285 (295)
                      +.+|.
T Consensus        91 ~~~W~   95 (96)
T cd01529          91 TSAWV   95 (96)
T ss_pred             HHHhc
Confidence            99996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.79  E-value=1.4e-19  Score=138.58  Aligned_cols=102  Identities=24%  Similarity=0.278  Sum_probs=85.1

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCCh--hHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGM--RSLQ  261 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~--rs~~  261 (295)
                      ...++++++.+.+.+..  +..+|||+|++.+|..||||||+|+|+..+..+   ....++++++|||||++|.  +|..
T Consensus         7 ~~~~s~~el~~~l~~~~--~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~---~~~~i~~~~~vvvyc~~g~~~~s~~   81 (110)
T cd01521           7 AFETDCWDVAIALKNGK--PDFVLVDVRSAEAYARGHVPGAINLPHREICEN---ATAKLDKEKLFVVYCDGPGCNGATK   81 (110)
T ss_pred             eeecCHHHHHHHHHcCC--CCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH---hhhcCCCCCeEEEEECCCCCchHHH
Confidence            34588899999887521  247899999999999999999999999876522   2234688999999999874  8999


Q ss_pred             HHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          262 VAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       262 aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      ++..|+..||+ +++++||+.+|...+.|.
T Consensus        82 ~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          82 AALKLAELGFP-VKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             HHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence            99999999995 999999999999888763

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.78  E-value=4.4e-19  Score=154.92  Aligned_cols=104  Identities=19%  Similarity=0.354  Sum_probs=83.4

Q ss_pred             ccccchhhhhhccCCCc--cccceeecCcchhHHhhcCCCCccccCccccCCCCccccccC--CCCCcEEEEeCCChhHH
Q 022540          185 QDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCHHGMRSL  260 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~--~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~--~~~~~ivv~C~~g~rs~  260 (295)
                      ..++++++.+++++...  .+..++||||++.||+.||||||+|||+..|.++..++....  .++++|++||++|.||.
T Consensus       110 ~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~~~~~l~~~~~~~kdk~IvvyC~~G~Rs~  189 (257)
T PRK05320        110 PSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTEFPEALAAHRADLAGKTVVSFCTGGIRCE  189 (257)
T ss_pred             ceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhhhHHHHHhhhhhcCCCeEEEECCCCHHHH
Confidence            34777888887765210  024689999999999999999999999988765432221111  27899999999999999


Q ss_pred             HHHHHHHHcCCCceEEccccHhhccccc
Q 022540          261 QVAQWLQTQGFRRVFNVSGGIHAYATKV  288 (295)
Q Consensus       261 ~aa~~L~~~G~~~v~~l~GG~~~W~~~~  288 (295)
                      .++..|++.||++|++|.||+.+|.++.
T Consensus       190 ~Aa~~L~~~Gf~~V~~L~GGi~~w~~~~  217 (257)
T PRK05320        190 KAAIHMQEVGIDNVYQLEGGILKYFEEV  217 (257)
T ss_pred             HHHHHHHHcCCcceEEeccCHHHHHHhC
Confidence            9999999999999999999999998764

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.78  E-value=1.6e-19  Score=140.55  Aligned_cols=100  Identities=19%  Similarity=0.315  Sum_probs=79.1

Q ss_pred             cccchhhhhhccCCC--ccccceeecCcchhHHhhcCCCCccccCcc-ccCCCCccc--cccCCCCCcEEEEeC-CChhH
Q 022540          186 DIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLR-QFGSWGPDI--TVKFDPQKDTYVMCH-HGMRS  259 (295)
Q Consensus       186 ~is~~el~~~L~~~~--~~~~~~iiDvR~~~e~~~ghIpgAinip~~-~l~~~~~~~--~~~~~~~~~ivv~C~-~g~rs  259 (295)
                      .++++++.+++.+..  ....+.+||||++.||..||||||+|||+. .+.......  ...++++++|||||+ +|.||
T Consensus         3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~~~~~~~~~~~~~~vv~yC~~sg~rs   82 (121)
T cd01530           3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFLDKPGVASKKKRRVLIFHCEFSSKRG   82 (121)
T ss_pred             ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHHHhhcccccCCCCEEEEECCCccccH
Confidence            477888988886520  013578999999999999999999999996 453321110  012578999999997 99999


Q ss_pred             HHHHHHHHHc------------CCCceEEccccHhhcc
Q 022540          260 LQVAQWLQTQ------------GFRRVFNVSGGIHAYA  285 (295)
Q Consensus       260 ~~aa~~L~~~------------G~~~v~~l~GG~~~W~  285 (295)
                      ..++..|+..            ||++|++|+||+.+|.
T Consensus        83 ~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          83 PRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             HHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence            9999999985            9999999999999984

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.78  E-value=1.8e-19  Score=139.51  Aligned_cols=98  Identities=22%  Similarity=0.392  Sum_probs=80.7

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHh-hcCCCCccccCccccCCCC------ccccccCCCCCcEEEEeCCChhH
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVA-LSSLPGFQVLPLRQFGSWG------PDITVKFDPQKDTYVMCHHGMRS  259 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~-~ghIpgAinip~~~l~~~~------~~~~~~~~~~~~ivv~C~~g~rs  259 (295)
                      ++++++.+++++.   ++..+||||++.||. .||||||+|+|+..+....      ..+...++++++||+||++|.+|
T Consensus         1 is~~el~~~l~~~---~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs   77 (117)
T cd01522           1 LTPAEAWALLQAD---PQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGNRS   77 (117)
T ss_pred             CCHHHHHHHHHhC---CCeEEEECCCHHHHhcccCCCCceecchhhccccccCHHHHHHHHhhCCCCCeEEEEcCCCccH
Confidence            3567888888763   367899999999999 9999999999998765321      11112236889999999999999


Q ss_pred             HHHHHHHHHcCCCceEEccccHhhcccc
Q 022540          260 LQVAQWLQTQGFRRVFNVSGGIHAYATK  287 (295)
Q Consensus       260 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~  287 (295)
                      ..++..|+..||++++++.||+.+|...
T Consensus        78 ~~aa~~L~~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          78 IAAAEAAAQAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             HHHHHHHHHCCCCeEEECcCceecCCCC
Confidence            9999999999999999999999999643

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.78  E-value=4.5e-19  Score=132.17  Aligned_cols=88  Identities=30%  Similarity=0.537  Sum_probs=75.5

Q ss_pred             ccceeecCcchhHHhhcCCCCccccCccccCCCCccc----------cccCCCCCcEEEEeCCChhHHHHHHHHHHcCCC
Q 022540          203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI----------TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFR  272 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~----------~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~  272 (295)
                      ++..|||+|++.+|..||||||+|+|+..+.......          ....+++++|||||.+|.++..++..|+..||+
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~   82 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFK   82 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCC
Confidence            4678999999999999999999999998765542211          233578899999999999999999999999999


Q ss_pred             ceEEccccHhhcccccCC
Q 022540          273 RVFNVSGGIHAYATKVDP  290 (295)
Q Consensus       273 ~v~~l~GG~~~W~~~~~p  290 (295)
                      +|++|+||+.+|...+.|
T Consensus        83 ~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       83 NVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             ceEEecCCHHHHHhcCCC
Confidence            999999999999987754

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=8.5e-19  Score=134.41  Aligned_cols=92  Identities=32%  Similarity=0.548  Sum_probs=83.6

Q ss_pred             CCCccEEEeeEEeccc-------------------hHHHHHHHHHHhcCCC-cHHHHHHHhCCCCCccCCCccccccCCC
Q 022540           85 GGDREILVQHLLVKED-------------------DLNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWVRKGQ  144 (295)
Q Consensus        85 ~~~~~~~~~hIl~~~~-------------------~~~~a~~~~~~i~~g~-~F~~~a~~~S~~~~~~~gG~lg~~~~~~  144 (295)
                      ..+++|+.+||||+-+                   +...++.+.+.|.+|+ +|++||+++|++.++..||+||||.+++
T Consensus        50 ~~p~~Vr~sHlLVKH~~SRrpsSwr~~~it~skeeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrgq  129 (163)
T KOG3259|consen   50 GEPARVRCSHLLVKHKGSRRPSSWRSENITRSKEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRGQ  129 (163)
T ss_pred             CCccceeEEEEEEccccCCCCcccccccchhhHHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCccccccccc
Confidence            5678999999999942                   3456778888899997 9999999999999999999999999999


Q ss_pred             CcHHHHHHHHhCCCCccc-cccccceeEEEeee
Q 022540          145 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  176 (295)
Q Consensus       145 ~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~  176 (295)
                      |-++|++++|+|++|++| ||.|+.|+|||+..
T Consensus       130 Mqk~FEdaafaL~~ge~SgiV~t~SG~HiI~R~  162 (163)
T KOG3259|consen  130 MQKPFEDAAFALKVGEMSGIVDTDSGVHIIYRT  162 (163)
T ss_pred             ccccchhhhhhcccccccCceecCCceEEEEec
Confidence            999999999999999999 99999999999753

>PRK01415 hypothetical protein; Validated

Probab=99.78  E-value=2.3e-19  Score=154.51  Aligned_cols=101  Identities=19%  Similarity=0.382  Sum_probs=85.6

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccc--cccCCCCCcEEEEeCCChhHHHH
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI--TVKFDPQKDTYVMCHHGMRSLQV  262 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~--~~~~~~~~~ivv~C~~g~rs~~a  262 (295)
                      ..++++++.+++++    +++++||||++.||..||||||+|+|+..+.+...+.  ...++++++|++||.+|.||..+
T Consensus       112 ~~i~p~e~~~ll~~----~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e~~~~~~~~~~~~k~k~Iv~yCtgGiRs~kA  187 (247)
T PRK01415        112 EYIEPKDWDEFITK----QDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQFPAWVQQNQELLKGKKIAMVCTGGIRCEKS  187 (247)
T ss_pred             cccCHHHHHHHHhC----CCcEEEECCCHHHHhcCCcCCCCCCChHHHhhhHHHHhhhhhhcCCCeEEEECCCChHHHHH
Confidence            45888999999986    5788999999999999999999999987664321111  13357899999999999999999


Q ss_pred             HHHHHHcCCCceEEccccHhhcccccC
Q 022540          263 AQWLQTQGFRRVFNVSGGIHAYATKVD  289 (295)
Q Consensus       263 a~~L~~~G~~~v~~l~GG~~~W~~~~~  289 (295)
                      +..|++.||++|++|.||+.+|.+...
T Consensus       188 a~~L~~~Gf~~Vy~L~GGi~~w~~~~~  214 (247)
T PRK01415        188 TSLLKSIGYDEVYHLKGGILQYLEDTQ  214 (247)
T ss_pred             HHHHHHcCCCcEEEechHHHHHHHhcc
Confidence            999999999999999999999987654

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.78  E-value=3.8e-19  Score=145.19  Aligned_cols=106  Identities=17%  Similarity=0.239  Sum_probs=82.5

Q ss_pred             hhcccccchhhhhhccCCCccccceeecCcchh----HHhhc---------CCCCccccCccccCCCCcc----c---cc
Q 022540          182 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPE----EVALS---------SLPGFQVLPLRQFGSWGPD----I---TV  241 (295)
Q Consensus       182 ~~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~----e~~~g---------hIpgAinip~~~l~~~~~~----~---~~  241 (295)
                      .....++++++.+++.+    ....|||||++.    +|..|         |||||+|+|+..+......    +   +.
T Consensus        33 ~~~~~vs~~el~~~l~~----~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~l~~~~~~~~~~~l~  108 (162)
T TIGR03865        33 KGARVLDTEAAQALLAR----GPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGNLAPAWQAYFRRGLE  108 (162)
T ss_pred             CCccccCHHHHHHHHhC----CCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCCCCCchhHHHHHHHH
Confidence            44567889999999976    457899999865    45444         9999999996433221110    1   11


Q ss_pred             ---cCCCCCcEEEEeCCCh-hHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          242 ---KFDPQKDTYVMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       242 ---~~~~~~~ivv~C~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                         ..+++++||+||++|. +|..++..|+.+||++|++|+||+.+|...+.|.
T Consensus       109 ~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv  162 (162)
T TIGR03865       109 RATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL  162 (162)
T ss_pred             HhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence               1258899999999986 8999999999999999999999999999999874

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.77  E-value=2.5e-19  Score=140.98  Aligned_cols=94  Identities=31%  Similarity=0.469  Sum_probs=75.4

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC--------------------------cccc
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG--------------------------PDIT  240 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~--------------------------~~~~  240 (295)
                      ++++++.+.+.+     +..|||||++.||..||||||+|||+..+....                          ..+.
T Consensus         1 ~s~~el~~~l~~-----~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (128)
T cd01520           1 ITAEDLLALRKA-----DGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRIL   75 (128)
T ss_pred             CCHHHHHHHHhc-----CCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHH
Confidence            456788887763     468999999999999999999999996432110                          0010


Q ss_pred             -----ccCCCCCcEEEEeC-CChhHHHHHHHHHHcCCCceEEccccHhhccc
Q 022540          241 -----VKFDPQKDTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT  286 (295)
Q Consensus       241 -----~~~~~~~~ivv~C~-~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~  286 (295)
                           ..++++++|||||. +|.||..++..|+.+|| +|++|+||+.+|..
T Consensus        76 ~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          76 NEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             HHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence                 24688999999997 68999999999999999 69999999999964

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>PRK03002 prsA peptidylprolyl isomerase; Reviewed

Probab=99.77  E-value=4.8e-19  Score=157.57  Aligned_cols=90  Identities=28%  Similarity=0.608  Sum_probs=84.6

Q ss_pred             cEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCCCCccc-cccc
Q 022540           89 EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT  166 (295)
Q Consensus        89 ~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~  166 (295)
                      +++++||+++.++.  |+.++++|++|++|+++|++||.|+ ++.+||++||+..+.++|+|.+++++|++|++| ||++
T Consensus       136 ~~~~~~Ilv~~~~~--A~~i~~~l~~G~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~GevS~pI~t  213 (285)
T PRK03002        136 EIKASHILVSDENE--AKEIKKKLDAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQISNPVKS  213 (285)
T ss_pred             ceEEEEEEECCHHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCCCCcCCcEEE
Confidence            58999999998755  8999999999999999999999998 788999999999999999999999999999999 9999


Q ss_pred             cceeEEEeeehhhh
Q 022540          167 KFGWHLLQVLSERE  180 (295)
Q Consensus       167 ~~G~~ii~v~~~~~  180 (295)
                      ++|||++++.+++.
T Consensus       214 ~~G~hIikv~~~~~  227 (285)
T PRK03002        214 PNGYHIIKLTDKKD  227 (285)
T ss_pred             CCEEEEEEEeecCC
Confidence            99999999998764

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.76  E-value=1.1e-18  Score=133.10  Aligned_cols=91  Identities=33%  Similarity=0.546  Sum_probs=80.7

Q ss_pred             ccceeecCcchhHHhhcCCCC-ccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccH
Q 022540          203 KEAQLIDVREPEEVALSSLPG-FQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI  281 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpg-Ainip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~  281 (295)
                      +...++|||++.||..+|||| ++|+|+..+........  ++++++++|||.+|.||..++..|+..||++++++.||+
T Consensus        19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~--~~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~   96 (110)
T COG0607          19 EDAVLLDVREPEEYERGHIPGAAINIPLSELKAAENLLE--LPDDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGI   96 (110)
T ss_pred             CCCEEEeccChhHhhhcCCCcceeeeecccchhhhcccc--cCCCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcH
Confidence            467999999999999999999 99999998866432222  578999999999999999999999999999888999999


Q ss_pred             hhcccccCCCCCCC
Q 022540          282 HAYATKVDPSIPTY  295 (295)
Q Consensus       282 ~~W~~~~~p~~p~~  295 (295)
                      .+|...+.|..+.+
T Consensus        97 ~~w~~~~~~~~~~~  110 (110)
T COG0607          97 DAWKGAGLPLVRGY  110 (110)
T ss_pred             HHHHhcCCCcccCC
Confidence            99999999987653

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.76  E-value=8.3e-19  Score=162.66  Aligned_cols=106  Identities=34%  Similarity=0.607  Sum_probs=92.7

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHH
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  264 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~  264 (295)
                      ..++++++.+++++.   ....+||+|++.||..||||||+|+|+..+...  .....++++++|||||++|.||..++.
T Consensus       287 ~~Is~~el~~~l~~~---~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~--~~~~~l~~d~~iVvyC~~G~rS~~aa~  361 (392)
T PRK07878        287 STITPRELKEWLDSG---KKIALIDVREPVEWDIVHIPGAQLIPKSEILSG--EALAKLPQDRTIVLYCKTGVRSAEALA  361 (392)
T ss_pred             CccCHHHHHHHHhCC---CCeEEEECCCHHHHhcCCCCCCEEcChHHhcch--hHHhhCCCCCcEEEEcCCChHHHHHHH
Confidence            457788888888753   356899999999999999999999999876431  123456889999999999999999999


Q ss_pred             HHHHcCCCceEEccccHhhcccccCCCCCCC
Q 022540          265 WLQTQGFRRVFNVSGGIHAYATKVDPSIPTY  295 (295)
Q Consensus       265 ~L~~~G~~~v~~l~GG~~~W~~~~~p~~p~~  295 (295)
                      .|++.||++|++++||+.+|...++|.+|.|
T Consensus       362 ~L~~~G~~~V~~L~GG~~~W~~~~~~~~p~~  392 (392)
T PRK07878        362 ALKKAGFSDAVHLQGGVVAWAKQVDPSLPMY  392 (392)
T ss_pred             HHHHcCCCcEEEecCcHHHHHHhcCCCCCCC
Confidence            9999999999999999999999999999998

>PRK02998 prsA peptidylprolyl isomerase; Reviewed

Probab=99.76  E-value=7.3e-19  Score=156.27  Aligned_cols=90  Identities=37%  Similarity=0.603  Sum_probs=84.6

Q ss_pred             cEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCCCCccc-cccc
Q 022540           89 EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT  166 (295)
Q Consensus        89 ~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~  166 (295)
                      +++++||++++++.  |++++++|++|++|+++|++||.|+ ++.+||++||+..+.++|+|.+++|+|++|++| ||.+
T Consensus       134 ~~~v~~Ilv~~e~~--A~~i~~~l~~G~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~GevS~pi~t  211 (283)
T PRK02998        134 EMKVSHILVKDEKT--AKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQVSEPVKT  211 (283)
T ss_pred             ceEEEEEEeCCHHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCCCCcCCceEE
Confidence            58999999998655  9999999999999999999999998 778999999999999999999999999999999 9999


Q ss_pred             cceeEEEeeehhhh
Q 022540          167 KFGWHLLQVLSERE  180 (295)
Q Consensus       167 ~~G~~ii~v~~~~~  180 (295)
                      ++|||++++.+++.
T Consensus       212 ~~G~hIikv~~~~~  225 (283)
T PRK02998        212 TYGYHIIKVTDKKE  225 (283)
T ss_pred             CCEEEEEEEeccCC
Confidence            99999999998654

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.76  E-value=1.3e-18  Score=135.67  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=79.9

Q ss_pred             ccchhhhhhccCCCccccceeecCcch-------hHHhhcCCCCccccCccccCCC----Ccccc-----------ccCC
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREP-------EEVALSSLPGFQVLPLRQFGSW----GPDIT-----------VKFD  244 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~-------~e~~~ghIpgAinip~~~l~~~----~~~~~-----------~~~~  244 (295)
                      ++++++.+++.+    ....|||+|++       .+|..||||||+|+|+..+...    ...+.           ..++
T Consensus         2 i~~~~l~~~l~~----~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (122)
T cd01448           2 VSPDWLAEHLDD----PDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGIS   77 (122)
T ss_pred             cCHHHHHHHhCC----CCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence            567788888876    35789999999       9999999999999999766432    11110           1246


Q ss_pred             CCCcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccccHhhccccc
Q 022540          245 PQKDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV  288 (295)
Q Consensus       245 ~~~~ivv~C~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~  288 (295)
                      ++++|||||++ |.+|..++..|+..||++|++++||+.+|...+
T Consensus        78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence            78999999998 588999999999999999999999999997653

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>PRK04405 prsA peptidylprolyl isomerase; Provisional

Probab=99.76  E-value=1.4e-18  Score=155.21  Aligned_cols=91  Identities=23%  Similarity=0.423  Sum_probs=82.6

Q ss_pred             ccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCcccccc--CCCCcHHHHHHHHhCCCCcc-c-
Q 022540           88 REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVR--KGQLVPEFEEVAFTTPLNKV-A-  162 (295)
Q Consensus        88 ~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~--~~~~~~~~~~~~~~l~~G~v-s-  162 (295)
                      ++|+++||++++++.  |++++++|++|++|+++|++||+|+ ++.+||+|||+.  .+.++|+|.+++++|++|++ | 
T Consensus       143 ~~~~v~hIlv~~~~~--A~~v~~~l~~G~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a~~~L~~Geiss~  220 (298)
T PRK04405        143 PKVTVQHILVSKKST--AETVIKKLKDGKDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTAAFKLKNGEYTTT  220 (298)
T ss_pred             hhEEEEEEEecChHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHHHHcCCCCCccCC
Confidence            479999999997765  9999999999999999999999998 778999999885  46899999999999999998 5 


Q ss_pred             cccccceeEEEeeehhhh
Q 022540          163 RCKTKFGWHLLQVLSERE  180 (295)
Q Consensus       163 pv~~~~G~~ii~v~~~~~  180 (295)
                      ||++++||||+++.+...
T Consensus       221 pv~t~~GyhIikv~~~~~  238 (298)
T PRK04405        221 PVKTTYGYEVIKMIKHPA  238 (298)
T ss_pred             CEEeCCeEEEEEEeecCC
Confidence            999999999999987543

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.76  E-value=1.9e-18  Score=133.83  Aligned_cols=94  Identities=20%  Similarity=0.360  Sum_probs=77.1

Q ss_pred             cchhhhhhccCCCccccceeecCcchhHHhh-----------cCCCCccccCccccCCCCc---------cccc--cCCC
Q 022540          188 QPDELHKKMQDPNFHKEAQLIDVREPEEVAL-----------SSLPGFQVLPLRQFGSWGP---------DITV--KFDP  245 (295)
Q Consensus       188 s~~el~~~L~~~~~~~~~~iiDvR~~~e~~~-----------ghIpgAinip~~~l~~~~~---------~~~~--~~~~  245 (295)
                      +++++.+.+++    ....|||+|+..||..           ||||||+|+|+..+.....         ..+.  .+++
T Consensus         2 s~~~l~~~l~~----~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (118)
T cd01449           2 TAEEVLANLDS----GDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITP   77 (118)
T ss_pred             CHHHHHHhcCC----CCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCC
Confidence            56778887765    3578999999999987           9999999999976543210         1111  2357


Q ss_pred             CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcc
Q 022540          246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA  285 (295)
Q Consensus       246 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~  285 (295)
                      +++||+||++|.+|..++..|+.+||+++++++||+.+|.
T Consensus        78 ~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~  117 (118)
T cd01449          78 DKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG  117 (118)
T ss_pred             CCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence            8999999999999999999999999999999999999996

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional

Probab=99.75  E-value=5.2e-19  Score=165.75  Aligned_cols=116  Identities=19%  Similarity=0.309  Sum_probs=96.6

Q ss_pred             cccChHhhhccccCCCCCCCCCCCccEEEeeEEeccc----------hHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccC
Q 022540           64 RSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKED----------DLNLLSELQRRVSQGEDLSDLAVEHSICPSKGE  133 (295)
Q Consensus        64 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~hIl~~~~----------~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~  133 (295)
                      -.|.+.|...|.....  ..+..+.+|+++||+|+.+          .+++|++++++|++|++|+++|++||+|+++.+
T Consensus       132 i~vs~~ei~~~~~~~~--~~~~~~~~~~~~~I~i~~~~~~s~~~~~~~~~~a~~l~~~l~~g~~F~~lA~~yS~~~~a~~  209 (413)
T PRK10770        132 ITILPQEVDSLAKQIG--NQNDASTELNLSHILIPLPENPTQDQVDEAESQARSIVDQARNGADFGKLAIAYSADQQALK  209 (413)
T ss_pred             CCCCHHHHHHHHHHHH--hhccccceEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCccccc
Confidence            4556666544432111  1124577899999999832          356799999999999999999999999998999


Q ss_pred             CCccccccCCCCcHHHHHHHHhCCCCccc-cccccceeEEEeeehhhhh
Q 022540          134 GGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA  181 (295)
Q Consensus       134 gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~~~~~  181 (295)
                      ||+|||+..++|+++|.+++++|++|++| |+++++|||++++.+.++.
T Consensus       210 gGdlg~~~~~~l~~~~~~~~~~l~~G~is~Pi~t~~GyhIikl~~~~~~  258 (413)
T PRK10770        210 GGQMGWGRIQELPGLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE  258 (413)
T ss_pred             CCcCCccccccccHHHHHHHHhCCCCCCCCcEECCCceEEEEEeeeccc
Confidence            99999999999999999999999999999 9999999999999987653

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.75  E-value=1.4e-18  Score=128.67  Aligned_cols=80  Identities=26%  Similarity=0.303  Sum_probs=67.6

Q ss_pred             ccceeecCcchhHHhhcCCCCccccCccccCCCCccccccC-CCCCcEEEEeCCChh--HHHHHHHHHHcCCCceEEccc
Q 022540          203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF-DPQKDTYVMCHHGMR--SLQVAQWLQTQGFRRVFNVSG  279 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~-~~~~~ivv~C~~g~r--s~~aa~~L~~~G~~~v~~l~G  279 (295)
                      +.+.+||+|++.||..||||||+|+|+..+...  . ...+ +++++|||||.+|.+  |..++..|++.||++|++|+|
T Consensus         9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--~-~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~G   85 (92)
T cd01532           9 EEIALIDVREEDPFAQSHPLWAANLPLSRLELD--A-WVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEG   85 (92)
T ss_pred             CCeEEEECCCHHHHhhCCcccCeeCCHHHHHhh--h-HhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccC
Confidence            467899999999999999999999999765321  1 1113 358899999999887  689999999999999999999


Q ss_pred             cHhhcc
Q 022540          280 GIHAYA  285 (295)
Q Consensus       280 G~~~W~  285 (295)
                      |+.+|.
T Consensus        86 G~~~W~   91 (92)
T cd01532          86 GLQGWR   91 (92)
T ss_pred             CHHHHc
Confidence            999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.75  E-value=1e-18  Score=131.23  Aligned_cols=81  Identities=25%  Similarity=0.360  Sum_probs=68.3

Q ss_pred             ccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540          203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  282 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~  282 (295)
                      ....+||+|++.||..||||||+|||+.++........  .+++++|||||++|.+|..++..|++.||++++++ ||+.
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l~~~~--~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~-GG~~   93 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHIATAV--PDKNDTVKLYCNAGRQSGMAKDILLDMGYTHAENA-GGIK   93 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCEECCHHHHHHHHHHhC--CCCCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEec-CCHH
Confidence            34579999999999999999999999987754322221  24678999999999999999999999999999885 9999


Q ss_pred             hccc
Q 022540          283 AYAT  286 (295)
Q Consensus       283 ~W~~  286 (295)
                      +|..
T Consensus        94 ~~~~   97 (101)
T TIGR02981        94 DIAM   97 (101)
T ss_pred             Hhhh
Confidence            9963

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.74  E-value=1.1e-18  Score=134.23  Aligned_cols=98  Identities=18%  Similarity=0.286  Sum_probs=78.1

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccC--CCCCcEEEEeC-CChhHHHH
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCH-HGMRSLQV  262 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~--~~~~~ivv~C~-~g~rs~~a  262 (295)
                      .++++++.+++....  ....+||||++ ||..||||||+|+|+..+......+....  +++++|||||. +|.|+..+
T Consensus         3 ~is~~~l~~~~~~~~--~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~~~~~~~~~~~~~~~iv~yC~~~~~r~~~a   79 (113)
T cd01531           3 YISPAQLKGWIRNGR--PPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQLNQLVQLLSGSKKDTVVFHCALSQVRGPSA   79 (113)
T ss_pred             cCCHHHHHHHHHcCC--CCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCHHHHHHHHhcCCCCeEEEEeecCCcchHHH
Confidence            467888988886531  24679999999 99999999999999988765433333222  56789999998 67899988


Q ss_pred             HHHHHH--------cCCCceEEccccHhhccc
Q 022540          263 AQWLQT--------QGFRRVFNVSGGIHAYAT  286 (295)
Q Consensus       263 a~~L~~--------~G~~~v~~l~GG~~~W~~  286 (295)
                      +..|.+        .||.+|++|+||+.+|..
T Consensus        80 a~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~  111 (113)
T cd01531          80 ARKFLRYLDEEDLETSKFEVYVLHGGFNAWES  111 (113)
T ss_pred             HHHHHHHHHHhccccCCCeEEEEcChHHHHHh
Confidence            887754        499999999999999975

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>PRK07411 hypothetical protein; Validated

Probab=99.74  E-value=2.4e-18  Score=159.27  Aligned_cols=108  Identities=29%  Similarity=0.489  Sum_probs=90.2

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC-ccccccCCCCCcEEEEeCCChhHHHHH
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG-PDITVKFDPQKDTYVMCHHGMRSLQVA  263 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~-~~~~~~~~~~~~ivv~C~~g~rs~~aa  263 (295)
                      ..++++++.+++++..  .+.++||||++.||..||||||+|||+..+.... ...+..++++++||+||.+|.||..++
T Consensus       282 ~~Is~~el~~~l~~~~--~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~~~~l~~l~~d~~IVvyC~~G~RS~~aa  359 (390)
T PRK07411        282 PEMTVTELKALLDSGA--DDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPGVEKVKELLNGHRLIAHCKMGGRSAKAL  359 (390)
T ss_pred             CccCHHHHHHHHhCCC--CCeEEEECCCHHHhccCcCCCCEEccHHHhhcccchHHHhhcCCCCeEEEECCCCHHHHHHH
Confidence            4577888888886531  2468999999999999999999999998775421 112234568899999999999999999


Q ss_pred             HHHHHcCCCceEEccccHhhcccccCCCCCCC
Q 022540          264 QWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY  295 (295)
Q Consensus       264 ~~L~~~G~~~v~~l~GG~~~W~~~~~p~~p~~  295 (295)
                      ..|+..||++ +.+.||+.+|.+..+|++|.|
T Consensus       360 ~~L~~~G~~~-~~l~GG~~~W~~~~~p~~p~y  390 (390)
T PRK07411        360 GILKEAGIEG-TNVKGGITAWSREVDPSVPQY  390 (390)
T ss_pred             HHHHHcCCCe-EEecchHHHHHHhcCCCCCCC
Confidence            9999999985 689999999999999999998

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.74  E-value=2.2e-18  Score=138.23  Aligned_cols=86  Identities=17%  Similarity=0.205  Sum_probs=76.1

Q ss_pred             ccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540          203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  282 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~  282 (295)
                      ....|||||++.+|..||||||+|+|...|...    +..++++.+|||||.+|.+|..++..|+..||++|++|+||+.
T Consensus        10 ~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~----l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~   85 (145)
T cd01535          10 GQTAVVDVTASANYVKRHIPGAWWVLRAQLAQA----LEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA   85 (145)
T ss_pred             CCeEEEECCCHHHHHcCCCCCceeCCHHHHHHH----HHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence            357899999999999999999999998877433    4445778999999999999999999999999999999999999


Q ss_pred             hcccccCCCC
Q 022540          283 AYATKVDPSI  292 (295)
Q Consensus       283 ~W~~~~~p~~  292 (295)
                      +|...+.|..
T Consensus        86 aW~~~g~pl~   95 (145)
T cd01535          86 AWIAAGLPVE   95 (145)
T ss_pred             HHHHCCCCcc
Confidence            9999888754

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.73  E-value=4.5e-18  Score=124.43  Aligned_cols=81  Identities=36%  Similarity=0.617  Sum_probs=71.0

Q ss_pred             ccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540          203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  282 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~  282 (295)
                      ....|||+|++.+|..||||||+|+|+..+....  .....+++++|||||..|.++..++..|+..||.+++++.||+.
T Consensus         9 ~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~--~~~~~~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~   86 (89)
T cd00158           9 EDAVLLDVREPEEYAAGHIPGAINIPLSELEERA--ALLELDKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML   86 (89)
T ss_pred             CCeEEEECCCHHHHhccccCCCEecchHHHhhHH--HhhccCCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence            5679999999999999999999999998664321  12335789999999999999999999999999999999999999


Q ss_pred             hcc
Q 022540          283 AYA  285 (295)
Q Consensus       283 ~W~  285 (295)
                      +|.
T Consensus        87 ~w~   89 (89)
T cd00158          87 AWK   89 (89)
T ss_pred             hcC
Confidence            994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.73  E-value=3.4e-18  Score=153.48  Aligned_cols=102  Identities=21%  Similarity=0.474  Sum_probs=85.9

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcccc--ccCCCCCcEEEEeCCChhHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT--VKFDPQKDTYVMCHHGMRSLQ  261 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~--~~~~~~~~ivv~C~~g~rs~~  261 (295)
                      ...++++++.+++.+    ++.+|||||++.||..||||||+|+|+..|.+....+.  ....++++|++||++|.||..
T Consensus       111 ~~~is~~el~~~l~~----~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~~~~l~~~~~~~kdk~IvvyC~~G~Rs~~  186 (314)
T PRK00142        111 GTYLKPKEVNELLDD----PDVVFIDMRNDYEYEIGHFENAIEPDIETFREFPPWVEENLDPLKDKKVVMYCTGGIRCEK  186 (314)
T ss_pred             CcccCHHHHHHHhcC----CCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhhHHHHHHhcCCCCcCeEEEECCCCcHHHH
Confidence            345888899998876    56799999999999999999999999988765322221  123588999999999999999


Q ss_pred             HHHHHHHcCCCceEEccccHhhcccccC
Q 022540          262 VAQWLQTQGFRRVFNVSGGIHAYATKVD  289 (295)
Q Consensus       262 aa~~L~~~G~~~v~~l~GG~~~W~~~~~  289 (295)
                      ++.+|+..||++|++|+||+.+|.....
T Consensus       187 aa~~L~~~Gf~~V~~L~GGi~~w~~~~~  214 (314)
T PRK00142        187 ASAWMKHEGFKEVYQLEGGIITYGEDPE  214 (314)
T ss_pred             HHHHHHHcCCCcEEEecchHHHHHHhhc
Confidence            9999999999999999999999987644

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.73  E-value=1.1e-18  Score=133.59  Aligned_cols=95  Identities=32%  Similarity=0.570  Sum_probs=76.1

Q ss_pred             cchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC------------ccccccCCCCCcEEEEeCC
Q 022540          188 QPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG------------PDITVKFDPQKDTYVMCHH  255 (295)
Q Consensus       188 s~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~------------~~~~~~~~~~~~ivv~C~~  255 (295)
                      +++++.+.+.+    ...+|||+|++.+|..||||||+|+|+..+....            ......++++++|||||.+
T Consensus         1 s~~el~~~l~~----~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~   76 (113)
T PF00581_consen    1 SPEELKEMLEN----ESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSS   76 (113)
T ss_dssp             -HHHHHHHHTT----TTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESS
T ss_pred             CHHHHHhhhhC----CCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeec
Confidence            46788888843    6789999999999999999999999996541110            1112234678899999999


Q ss_pred             ChhHHHHHHH-----HHHcCCCceEEccccHhhccc
Q 022540          256 GMRSLQVAQW-----LQTQGFRRVFNVSGGIHAYAT  286 (295)
Q Consensus       256 g~rs~~aa~~-----L~~~G~~~v~~l~GG~~~W~~  286 (295)
                      |.++..++..     |..+||++|++|+||+.+|.+
T Consensus        77 ~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~  112 (113)
T PF00581_consen   77 GWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKA  112 (113)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence            9988877776     888999999999999999975

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>PRK03095 prsA peptidylprolyl isomerase; Reviewed

Probab=99.73  E-value=8.1e-18  Score=149.85  Aligned_cols=90  Identities=33%  Similarity=0.613  Sum_probs=85.0

Q ss_pred             cEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCCCCccc-cccc
Q 022540           89 EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT  166 (295)
Q Consensus        89 ~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~  166 (295)
                      +++++||+++.++.  |++++++|++|.||+++|++||.|+ ++.+||++||+..+.++|.|..++++|++|++| |+++
T Consensus       132 ~v~~~hIlv~~~~~--A~~i~~~l~~G~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~GevS~pi~t  209 (287)
T PRK03095        132 EIKASHILVKDEAT--AKKVKEELGQGKSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVKS  209 (287)
T ss_pred             cEEEEEEEeCCHHH--HHHHHHHHHCCCCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCCCCcCCceEE
Confidence            49999999998765  8999999999999999999999998 788999999999999999999999999999999 8999


Q ss_pred             cceeEEEeeehhhh
Q 022540          167 KFGWHLLQVLSERE  180 (295)
Q Consensus       167 ~~G~~ii~v~~~~~  180 (295)
                      ++|||++++.++++
T Consensus       210 ~~G~hIikv~~~~~  223 (287)
T PRK03095        210 QFGYHIIKVTDIKE  223 (287)
T ss_pred             CCEEEEEEEeeecC
Confidence            99999999998764

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.72  E-value=3.7e-18  Score=131.36  Aligned_cols=99  Identities=22%  Similarity=0.362  Sum_probs=74.3

Q ss_pred             cccchhhhhhccCCC--ccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccC--CCCCcEEEEeCC-ChhHH
Q 022540          186 DIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF--DPQKDTYVMCHH-GMRSL  260 (295)
Q Consensus       186 ~is~~el~~~L~~~~--~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~--~~~~~ivv~C~~-g~rs~  260 (295)
                      .++++++++++.+..  ..+...|||||++ ||..||||||+|||+..+..+.......+  .+.++|||||.+ |.||.
T Consensus         3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~~~~~~~~~~~~~~~iv~~C~~~g~rs~   81 (113)
T cd01443           3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTLPQVYALFSLAGVKLAIFYCGSSQGRGP   81 (113)
T ss_pred             ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHHHHHHHHhhhcCCCEEEEECCCCCcccH
Confidence            477889999887620  0024689999999 99999999999999987754433332222  346789999996 68888


Q ss_pred             HHHHHHH----HcCC--CceEEccccHhhcc
Q 022540          261 QVAQWLQ----TQGF--RRVFNVSGGIHAYA  285 (295)
Q Consensus       261 ~aa~~L~----~~G~--~~v~~l~GG~~~W~  285 (295)
                      .++.+|.    +.||  .++++|+||+.+|.
T Consensus        82 ~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          82 RAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             HHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            8776654    3475  68999999999995

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=2.4e-17  Score=119.90  Aligned_cols=91  Identities=30%  Similarity=0.625  Sum_probs=81.8

Q ss_pred             CCCCccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCCc---
Q 022540           84 GGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK---  160 (295)
Q Consensus        84 ~~~~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~---  160 (295)
                      ...+.-|.+||||....-+  +.+.++.|++|..|.++|.+||+|+ +..||+|||++++.|+-+|.+++|+|+++.   
T Consensus        34 kgggtaVKvRHiLCEKqGK--i~EA~eKLk~G~~F~evAA~YSEdk-ar~GGDLGW~~RG~MvGPFQdaAFalpvs~~~~  110 (133)
T KOG3258|consen   34 KGGGTAVKVRHILCEKQGK--INEAMEKLKSGMKFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQDAAFALPVSTVDK  110 (133)
T ss_pred             CCCcceEEEEEeeehhhch--HHHHHHHHHcccchHHHHHHhccCc-cccCCcccceeccccccchhhhhhcccccccCC
Confidence            3567889999999988877  9999999999999999999999998 567999999999999999999999999884   


Q ss_pred             ---cc-cccccceeEEEeeeh
Q 022540          161 ---VA-RCKTKFGWHLLQVLS  177 (295)
Q Consensus       161 ---vs-pv~~~~G~~ii~v~~  177 (295)
                         .+ ||++.+|||||.+..
T Consensus       111 pv~TdpP~KtkfGYHiImvEG  131 (133)
T KOG3258|consen  111 PVYTDPPVKTKFGYHIIMVEG  131 (133)
T ss_pred             ccccCCCcccccceEEEEecc
Confidence               34 689999999997754

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.71  E-value=7.9e-18  Score=127.01  Aligned_cols=79  Identities=25%  Similarity=0.391  Sum_probs=66.8

Q ss_pred             cceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhh
Q 022540          204 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA  283 (295)
Q Consensus       204 ~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~  283 (295)
                      +-.+||+|++.||..||||||+|+|+..+..+...+.  .+++++||+||++|.+|..++..|.+.||++|++ .||+.+
T Consensus        20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l~~l~--~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~-~GG~~~   96 (104)
T PRK10287         20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAV--PDKNDTVKLYCNAGRQSGQAKEILSEMGYTHAEN-AGGLKD   96 (104)
T ss_pred             CCEEEECCCHHHHhcCCCCccEECCHHHHHHHHHhcC--CCCCCeEEEEeCCChHHHHHHHHHHHcCCCeEEe-cCCHHH
Confidence            3469999999999999999999999987754322221  2457889999999999999999999999999987 699999


Q ss_pred             cc
Q 022540          284 YA  285 (295)
Q Consensus       284 W~  285 (295)
                      |.
T Consensus        97 ~~   98 (104)
T PRK10287         97 IA   98 (104)
T ss_pred             Hh
Confidence            95

>PRK00059 prsA peptidylprolyl isomerase; Provisional

Probab=99.70  E-value=1e-17  Score=152.90  Aligned_cols=112  Identities=28%  Similarity=0.425  Sum_probs=94.8

Q ss_pred             ccChHhh-hccccCCCCCCCCC-CCccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCcccccc
Q 022540           65 SFTSPKA-ASFSSGTEGSSPGG-GDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVR  141 (295)
Q Consensus        65 ~~~~~e~-~~~~~~~~~~~~~~-~~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~  141 (295)
                      .|++.|. ++|..+..   .+. .+.+++++||++++++.  |++++++|++|++|+++|++||.++ ++.+||++||+.
T Consensus       173 ~vsd~ei~~~y~~~~~---~~~~~p~~~~v~~I~~~~~~~--a~~~~~~l~~g~~F~~la~~~s~~~~~~~~~g~lg~~~  247 (336)
T PRK00059        173 KVTDKDAQKYYNENKS---KFTEKPNTMHLAHILVKTEDE--AKKVKKRLDKGEDFAKVAKEVSQDPGSKDKGGDLGDVP  247 (336)
T ss_pred             CCCHHHHHHHHHHhhh---hhcCCcceEEEEEEEecCHHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhhcCCcccccc
Confidence            4555555 34444432   122 57799999999998755  9999999999999999999999997 888999999999


Q ss_pred             C--CCCcHHHHHHHHhCCCCccc-cccccceeEEEeeehhhhh
Q 022540          142 K--GQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA  181 (295)
Q Consensus       142 ~--~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~~~~~  181 (295)
                      .  +.++|+|.+++++|++|++| |+.+++|||++++.+.++.
T Consensus       248 ~~~~~l~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~~~~~~  290 (336)
T PRK00059        248 YSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAIKKKEY  290 (336)
T ss_pred             cccCccCHHHHHHHHcCCCCCcCccEecCCeEEEEEEEeeccC
Confidence            8  78999999999999999999 8999999999999987653

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.69  E-value=2.4e-17  Score=152.35  Aligned_cols=101  Identities=29%  Similarity=0.375  Sum_probs=86.1

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHH
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  264 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~  264 (295)
                      ..++++++.+++.+     +..+||+|++.||..||||||+|+|+..+..+....  ..+++++||+||++|.||..++.
T Consensus         3 ~~is~~el~~~l~~-----~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~--~~~~~~~IvvyC~~G~rs~~aa~   75 (376)
T PRK08762          3 REISPAEARARAAQ-----GAVLIDVREAHERASGQAEGALRIPRGFLELRIETH--LPDRDREIVLICASGTRSAHAAA   75 (376)
T ss_pred             ceeCHHHHHHHHhC-----CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHHhhh--cCCCCCeEEEEcCCCcHHHHHHH
Confidence            34778888888864     468999999999999999999999998775442221  12678999999999999999999


Q ss_pred             HHHHcCCCceEEccccHhhcccccCCCC
Q 022540          265 WLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       265 ~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      .|+..||++|++++||+.+|...+.|..
T Consensus        76 ~L~~~G~~~v~~l~GG~~~W~~~g~p~~  103 (376)
T PRK08762         76 TLRELGYTRVASVAGGFSAWKDAGLPLE  103 (376)
T ss_pred             HHHHcCCCceEeecCcHHHHHhcCCccc
Confidence            9999999999999999999998888764

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.66  E-value=1.9e-16  Score=125.96  Aligned_cols=99  Identities=17%  Similarity=0.219  Sum_probs=75.7

Q ss_pred             ccchhhhhhccCCCccccceeecCcch--------hHHhh------------cCCCCccccCccccCCCCc---------
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREP--------EEVAL------------SSLPGFQVLPLRQFGSWGP---------  237 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~--------~e~~~------------ghIpgAinip~~~l~~~~~---------  237 (295)
                      ++.+++.+.+.+....++..|||+|..        .+|..            ||||||+|+|+..+.....         
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~   80 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE   80 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence            356778888763111146899999976        88988            9999999999865432111         


Q ss_pred             -cc---c--ccCCCCCcEEEEeCC---ChhHHHHHHHHHHcCCCceEEccccHhhcc
Q 022540          238 -DI---T--VKFDPQKDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNVSGGIHAYA  285 (295)
Q Consensus       238 -~~---~--~~~~~~~~ivv~C~~---g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~  285 (295)
                       .+   +  ..+.++++|||||.+   |..+..++..|+.+|+++|++|+||+.+|.
T Consensus        81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence             11   1  134678999999986   778999999999999999999999999996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>PRK10788 periplasmic folding chaperone; Provisional

Probab=99.64  E-value=1.2e-16  Score=157.18  Aligned_cols=95  Identities=18%  Similarity=0.261  Sum_probs=86.6

Q ss_pred             CCCCccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCCCCccc
Q 022540           84 GGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA  162 (295)
Q Consensus        84 ~~~~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs  162 (295)
                      ...+++++++||+++.++.  |++++++|++|++|+++|++||+|+ ++.+||+|||+..+.++++|.++++ +++|++|
T Consensus       265 ~~~~e~~~~~~i~~~~~~~--A~~~~~~l~~G~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~-~~~G~vs  341 (623)
T PRK10788        265 FTQPERKRYSIIQTKTEAE--AKAVLDELKKGADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGL-KEKGQLS  341 (623)
T ss_pred             cCChhheeeeEEEECCHHH--HHHHHHHHhCCCCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhc-cCCCCcC
Confidence            3567889999999986655  9999999999999999999999998 9999999999999999999999987 6889999


Q ss_pred             -cccccceeEEEeeehhhhh
Q 022540          163 -RCKTKFGWHLLQVLSEREA  181 (295)
Q Consensus       163 -pv~~~~G~~ii~v~~~~~~  181 (295)
                       |+++++||||+++...++.
T Consensus       342 ~pv~t~~G~~Iikv~~~~~~  361 (623)
T PRK10788        342 GVIKSSVGFLIVRLDDIQPA  361 (623)
T ss_pred             CcEEECCeEEEEEEEeeccC
Confidence             9999999999999987653

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.63  E-value=5.7e-16  Score=137.87  Aligned_cols=102  Identities=19%  Similarity=0.248  Sum_probs=81.4

Q ss_pred             cccchhhhhhccCCCccccceeecCcc----------hhHHhhcCCCCccccCccccCCCCc---cc----------c--
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVRE----------PEEVALSSLPGFQVLPLRQFGSWGP---DI----------T--  240 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~----------~~e~~~ghIpgAinip~~~l~~~~~---~~----------~--  240 (295)
                      -++++++.+.+.+    ++..|||+|+          +.+|..||||||+|+|+..+.....   ..          +  
T Consensus         6 lvs~~~l~~~l~~----~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (281)
T PRK11493          6 FVAADWLAEHIDD----PEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRE   81 (281)
T ss_pred             ccCHHHHHHhcCC----CCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            4778899999876    5679999996          6789999999999999865533211   01          1  


Q ss_pred             ccCCCCCcEEEEeCCChh-HHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          241 VKFDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       241 ~~~~~~~~ivv~C~~g~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      ..++++++|||||.++.+ +..++..|...||++|.+|+||+.+|...+.|.
T Consensus        82 ~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~  133 (281)
T PRK11493         82 LGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLL  133 (281)
T ss_pred             cCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCc
Confidence            124688999999998775 567788899999999999999999999887764

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.63  E-value=4.5e-16  Score=140.84  Aligned_cols=98  Identities=18%  Similarity=0.220  Sum_probs=79.3

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHH-----------hhcCCCCccccCccccCCCCcc---------cc--ccCC
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEV-----------ALSSLPGFQVLPLRQFGSWGPD---------IT--VKFD  244 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~-----------~~ghIpgAinip~~~l~~~~~~---------~~--~~~~  244 (295)
                      ++.+++...+.+    ....|||+|++.||           ..||||||+|||+..+......         .+  ..++
T Consensus       192 ~~~~~v~~~~~~----~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~~~~~~~~el~~~~~~~gi~  267 (320)
T PLN02723        192 WTLEQVKKNIED----KTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSSQTLLPAEELKKRFEQEGIS  267 (320)
T ss_pred             ecHHHHHHhhcC----CCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCCCCCCCHHHHHHHHHhcCCC
Confidence            567788877765    45689999999988           4599999999999765432111         11  1357


Q ss_pred             CCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhccccc
Q 022540          245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV  288 (295)
Q Consensus       245 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~  288 (295)
                      ++++||+||++|.+|+.++..|+.+||++|++|+|||.+|....
T Consensus       268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~  311 (320)
T PLN02723        268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALP  311 (320)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCC
Confidence            89999999999999999999999999999999999999998663

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.62  E-value=9.4e-16  Score=134.61  Aligned_cols=99  Identities=21%  Similarity=0.301  Sum_probs=80.8

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHhh----------cCCCCccccCccccCCCCc---------ccc--ccCCC
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL----------SSLPGFQVLPLRQFGSWGP---------DIT--VKFDP  245 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~----------ghIpgAinip~~~l~~~~~---------~~~--~~~~~  245 (295)
                      ++.+.+...+..    ...+|||+|++.+|.+          ||||||+|||+..+.....         .+.  ..+++
T Consensus       158 ~~~~~~~~~~~~----~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~  233 (285)
T COG2897         158 VDATLVADALEV----PAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDP  233 (285)
T ss_pred             CCHHHHHHHhcC----CCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCC
Confidence            444556666665    4567999999999988          9999999999987765211         111  23578


Q ss_pred             CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccccC
Q 022540          246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD  289 (295)
Q Consensus       246 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~  289 (295)
                      +++||+||++|.+|+.....|+.+|+.++.+++|+|.+|....+
T Consensus       234 ~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~  277 (285)
T COG2897         234 DKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPD  277 (285)
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCC
Confidence            99999999999999999999999999888999999999987755

>PRK12450 foldase protein PrsA; Reviewed

Probab=99.62  E-value=2.5e-16  Score=141.57  Aligned_cols=88  Identities=14%  Similarity=0.178  Sum_probs=76.3

Q ss_pred             cEEEeeEEeccchHHHHHHHHHHhc-CCCcHHHHHHHhCCCCCccCCCccccccC-CCCcHHHHHHHHhCCCCccc-cc-
Q 022540           89 EILVQHLLVKEDDLNLLSELQRRVS-QGEDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKVA-RC-  164 (295)
Q Consensus        89 ~~~~~hIl~~~~~~~~a~~~~~~i~-~g~~F~~~a~~~S~~~~~~~gG~lg~~~~-~~~~~~~~~~~~~l~~G~vs-pv-  164 (295)
                      +++++||++..++.  |++++++|+ .|+||+++|++||.|+  ..||++||... ++|+|+|.+++|+|++|++| || 
T Consensus       148 ~~~~~~I~~~~~~~--A~~i~~~l~~~G~dF~~lAk~~S~~~--~~~g~~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i~  223 (309)
T PRK12450        148 TMTAEIMQFEKEED--AKAALEAVKAEGADFAAIAKEKTIAA--DKKTTYTFDSGETTLPAEVVRAASGLKEGNRSEIIT  223 (309)
T ss_pred             cceeEEEEeCCHHH--HHHHHHHHHhcCCCHHHHHHHhCCCc--ccCCcccccCCCCCCCHHHHHHHHcCCCCCcccccc
Confidence            68899999976654  999999998 5999999999999986  35889998754 57999999999999999998 55 


Q ss_pred             -----cccceeEEEeeehhhh
Q 022540          165 -----KTKFGWHLLQVLSERE  180 (295)
Q Consensus       165 -----~~~~G~~ii~v~~~~~  180 (295)
                           ++++||||+++.+.+.
T Consensus       224 ~~~pv~t~~GyhIikl~~~~~  244 (309)
T PRK12450        224 ALDPATSKRTYHIIKVTKKAT  244 (309)
T ss_pred             CCCccccCCceEEEEEecccc
Confidence                 6899999999998764

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.61  E-value=3.2e-16  Score=140.30  Aligned_cols=87  Identities=36%  Similarity=0.445  Sum_probs=68.1

Q ss_pred             ceeecCcchhHHhhcCCCCccccCccccCCCC------------------------------ccccccCCCCCcEEEEeC
Q 022540          205 AQLIDVREPEEVALSSLPGFQVLPLRQFGSWG------------------------------PDITVKFDPQKDTYVMCH  254 (295)
Q Consensus       205 ~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~------------------------------~~~~~~~~~~~~ivv~C~  254 (295)
                      ..|||||++.||..||||||+|||+....+..                              ..+....+++..|||||.
T Consensus         3 ~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC~   82 (311)
T TIGR03167         3 DPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYCW   82 (311)
T ss_pred             CEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEEC
Confidence            47999999999999999999999995432110                              011112244556999995


Q ss_pred             -CChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          255 -HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       255 -~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                       +|.||..++.+|+..|| +|++++||+.+|...+.+.+
T Consensus        83 ~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~  120 (311)
T TIGR03167        83 RGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQL  120 (311)
T ss_pred             CCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhh
Confidence             78999999999999999 69999999999988776543

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.61  E-value=9.8e-16  Score=136.36  Aligned_cols=100  Identities=17%  Similarity=0.218  Sum_probs=78.3

Q ss_pred             chhhhhhccCCCccccceeecCcchhHHh-----------hcCCCCccccCccccCCCC-----cccc-----ccCCCCC
Q 022540          189 PDELHKKMQDPNFHKEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWG-----PDIT-----VKFDPQK  247 (295)
Q Consensus       189 ~~el~~~L~~~~~~~~~~iiDvR~~~e~~-----------~ghIpgAinip~~~l~~~~-----~~~~-----~~~~~~~  247 (295)
                      .+++...+..    ....|||+|+..||.           .||||||+|+|+..+....     .++.     ..+++++
T Consensus       157 ~~~v~~~~~~----~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  232 (281)
T PRK11493        157 LTDVLLASHE----KTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSFDR  232 (281)
T ss_pred             HHHHHHhhcC----CCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHhcCCCCCC
Confidence            3455555544    356899999999995           6999999999997765321     1110     1246889


Q ss_pred             cEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhccc-ccCCCC
Q 022540          248 DTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT-KVDPSI  292 (295)
Q Consensus       248 ~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~-~~~p~~  292 (295)
                      +||+||++|.||..++..|+.+||++|++|+|||.+|.. .+.|..
T Consensus       233 ~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~  278 (281)
T PRK11493        233 PIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVE  278 (281)
T ss_pred             CEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcC
Confidence            999999999999999999999999999999999999987 466654

>PRK01326 prsA foldase protein PrsA; Reviewed

Probab=99.60  E-value=7.9e-16  Score=138.51  Aligned_cols=88  Identities=16%  Similarity=0.275  Sum_probs=78.4

Q ss_pred             cEEEeeEEeccchHHHHHHHHHHhc-CCCcHHHHHHHhCCCCCccCCCccccccC-CCCcHHHHHHHHhCCCCccc-ccc
Q 022540           89 EILVQHLLVKEDDLNLLSELQRRVS-QGEDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKVA-RCK  165 (295)
Q Consensus        89 ~~~~~hIl~~~~~~~~a~~~~~~i~-~g~~F~~~a~~~S~~~~~~~gG~lg~~~~-~~~~~~~~~~~~~l~~G~vs-pv~  165 (295)
                      +++++||++..++.  |++++++|+ .|+||+++|++||.  ++.+||+|||+.. +.++++|.+++|+|++|++| ||+
T Consensus       145 ~~~~~~I~~~~~~~--A~~i~~~l~~~G~dF~~lA~~~S~--s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~pv~  220 (310)
T PRK01326        145 EVTAQIIRLDNEDK--AKSVLEEAKAEGADFAQIAKENTT--TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSDVIS  220 (310)
T ss_pred             cccchhhhHhhhHH--HHHHHHHHHhCCCCHHHHHHHhCc--ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCCcee
Confidence            57999999876655  999999998 59999999999999  6678999999987 46888999999999999999 887


Q ss_pred             c------cceeEEEeeehhhh
Q 022540          166 T------KFGWHLLQVLSERE  180 (295)
Q Consensus       166 ~------~~G~~ii~v~~~~~  180 (295)
                      +      .+||||+++.+.++
T Consensus       221 t~~~~~~~~GyhIikv~~~~~  241 (310)
T PRK01326        221 VLDPTAYQSKYYIVKVTKKTE  241 (310)
T ss_pred             cCCCCcCCceEEEEEEeccCC
Confidence            6      78999999998764

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.59  E-value=2.8e-15  Score=135.63  Aligned_cols=103  Identities=16%  Similarity=0.288  Sum_probs=81.0

Q ss_pred             cccchhhhhhccCCCccccceeecCc--------c-hhHHhhcCCCCccccCccccCCCCccc-------------cc--
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVR--------E-PEEVALSSLPGFQVLPLRQFGSWGPDI-------------TV--  241 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR--------~-~~e~~~ghIpgAinip~~~l~~~~~~~-------------~~--  241 (295)
                      .++++++.+.+.+    ++..|||+|        + ..+|..||||||+|+|+..+.......             +.  
T Consensus        23 lvs~~~L~~~l~~----~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~   98 (320)
T PLN02723         23 VVSVDWLHANLRE----PDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSAL   98 (320)
T ss_pred             eecHHHHHHHhcC----CCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHc
Confidence            4788899999876    467899996        3 368999999999999986654421111             11  


Q ss_pred             cCCCCCcEEEEeCCChh-HHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          242 KFDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       242 ~~~~~~~ivv~C~~g~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      .+.++++|||||.+|.. +..++..|+.+||++|++|+||+.+|..++.|..
T Consensus        99 Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~  150 (320)
T PLN02723         99 GIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVE  150 (320)
T ss_pred             CCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcc
Confidence            23578899999988765 5677888999999999999999999998887653

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.59  E-value=2.1e-15  Score=138.13  Aligned_cols=81  Identities=31%  Similarity=0.521  Sum_probs=70.7

Q ss_pred             cceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhh
Q 022540          204 EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA  283 (295)
Q Consensus       204 ~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~  283 (295)
                      ...|||+|++.||..||||||+|+|+..+.....  ...++++++|++||++|.+|..++..|++.||++|++++||+.+
T Consensus       274 ~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~--~~~~~~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~  351 (355)
T PRK05597        274 GVTLIDVREPSEFAAYSIPGAHNVPLSAIREGAN--PPSVSAGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEG  351 (355)
T ss_pred             CCEEEECCCHHHHccCcCCCCEEeCHHHhhhccc--cccCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHH
Confidence            4689999999999999999999999987654211  11256889999999999999999999999999999999999999


Q ss_pred             ccc
Q 022540          284 YAT  286 (295)
Q Consensus       284 W~~  286 (295)
                      |.+
T Consensus       352 W~~  354 (355)
T PRK05597        352 WLD  354 (355)
T ss_pred             Hhh
Confidence            964

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.59  E-value=2.9e-15  Score=145.54  Aligned_cols=102  Identities=17%  Similarity=0.248  Sum_probs=83.0

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCC-------CCc------cccc--cCCCCCcEE
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGS-------WGP------DITV--KFDPQKDTY  250 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~-------~~~------~~~~--~~~~~~~iv  250 (295)
                      .++++++.+.+++    ++.+|||+|++.+|..||||||+|+|+..+..       ..+      ..+.  .++++++||
T Consensus        10 lIs~~eL~~~l~~----~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VV   85 (610)
T PRK09629         10 VIEPNDLLERLDA----PELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYV   85 (610)
T ss_pred             eecHHHHHHHhcC----CCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEE
Confidence            4788999999976    46899999999999999999999999753211       001      1111  236799999


Q ss_pred             EEeCCC-hhHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          251 VMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       251 v~C~~g-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      |||++| .++..++..|+.+||++|++|+||+.+|..++.|.
T Consensus        86 vYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~  127 (610)
T PRK09629         86 VYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPL  127 (610)
T ss_pred             EECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCcc
Confidence            999977 57889999999999999999999999999988875

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.58  E-value=5.9e-16  Score=133.74  Aligned_cols=167  Identities=18%  Similarity=0.350  Sum_probs=121.6

Q ss_pred             eEEeccc--------hHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCCc-cccc
Q 022540           94 HLLVKED--------DLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNK-VARC  164 (295)
Q Consensus        94 hIl~~~~--------~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~-vspv  164 (295)
                      .|||+.+        ..+.++.+.+.|.+-..|+++.-+.|......       |.  .|--.+.+.+-+|-..+ +.|-
T Consensus        38 rillA~EGINgtvsG~~e~~~~~~~~l~a~~~f~~l~~K~s~~~~~p-------F~--r~kVk~kkEIV~lg~~ddv~p~  108 (308)
T COG1054          38 RILLAHEGINGTVSGSAEAIEAYMAWLRADPGFADLRFKISEADEKP-------FW--RLKVKLKKEIVALGVEDDVDPL  108 (308)
T ss_pred             EEEEccCCcceeEecCHHHHHHHHHHHHhCcccccceeeeccccCCC-------cc--eEEEeehhhheecCCCCCcCcc
Confidence            4666654        35568889999988778999988887754210       11  11122333444554444 4442


Q ss_pred             cccceeEEEeeehhhhhhhcccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcccccc--
Q 022540          165 KTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVK--  242 (295)
Q Consensus       165 ~~~~G~~ii~v~~~~~~~~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~--  242 (295)
                      ..-                -..++++++.++|.+    ++.++||.|+..||+.||..||++.+...|.++.++....  
T Consensus       109 ~~v----------------G~yl~p~~wn~~l~D----~~~vviDtRN~YE~~iG~F~gAv~p~~~tFrefP~~v~~~~~  168 (308)
T COG1054         109 ENV----------------GTYLSPKDWNELLSD----PDVVVIDTRNDYEVAIGHFEGAVEPDIETFREFPAWVEENLD  168 (308)
T ss_pred             ccc----------------cCccCHHHHHHHhcC----CCeEEEEcCcceeEeeeeecCccCCChhhhhhhHHHHHHHHH
Confidence            211                234778999999998    6789999999999999999999999998776654433221  


Q ss_pred             CCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccccC
Q 022540          243 FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD  289 (295)
Q Consensus       243 ~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~  289 (295)
                      .-++++|+.||.+|.|+.+++.+|...||++|+.|+||+-.+.+...
T Consensus       169 ~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGIl~Y~e~~~  215 (308)
T COG1054         169 LLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGILKYLEDVG  215 (308)
T ss_pred             hccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchHHHHhhhcC
Confidence            23677999999999999999999999999999999999998876543

>TIGR02925 cis_trans_EpsD peptidyl-prolyl cis-trans isomerase, EpsD family

Probab=99.57  E-value=3.3e-15  Score=129.35  Aligned_cols=112  Identities=16%  Similarity=0.068  Sum_probs=91.8

Q ss_pred             ccChHhh-hccccCCCCCCCCCCCccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCC
Q 022540           65 SFTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKG  143 (295)
Q Consensus        65 ~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~  143 (295)
                      .+++.|. ++|..+..   .+..+.+|+++||+++.+ ...++++++++++|++|+++|.+++... ...+|.+||+..+
T Consensus       116 ~vse~ev~~~Y~~~~~---~f~~~~~~~~~hIlv~~~-~~~a~~~~~~l~~g~~f~~la~~~~~~~-~~~~~~~~~~~~~  190 (232)
T TIGR02925       116 KPSPEEAKSYFQEHPQ---LFAERKLYNLQEIALPPD-MELLDELRAMVENGKPLEDILAWLKAKN-VPFNASSAARPAE  190 (232)
T ss_pred             CCCHHHHHHHHHhCHH---hcCCCceEEEEEEEecCC-hhHHHHHHHHHhcCCCHHHHHHHhhhcC-cccccccccCchh
Confidence            4555554 45554432   235678999999999854 3358999999999999999999988643 3457889999999


Q ss_pred             CCcHHHHHHHHhCCCCccccccccceeEEEeeehhhhh
Q 022540          144 QLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREA  181 (295)
Q Consensus       144 ~~~~~~~~~~~~l~~G~vspv~~~~G~~ii~v~~~~~~  181 (295)
                      +++|+|.+++++|++|+++|+++++|||++++.+.++.
T Consensus       191 ~l~~~~~~a~~~l~~G~is~v~s~~G~hiikv~~~~~~  228 (232)
T TIGR02925       191 QLPAEILAVLAKLKPGAPLVVQGPNNVLILVLADAQPA  228 (232)
T ss_pred             hCCHHHHHHHHhCCCCCeEEeecCCceEEEEEeccccC
Confidence            99999999999999999999999999999999887653

Members of this family belong to the peptidyl-prolyl cis-trans isomerase family and are found in loci associated with exopolysaccharide biosynthesis. All members are encoded near a homolog of EpsH, as detected by TIGR02602.

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.57  E-value=1.1e-15  Score=138.74  Aligned_cols=97  Identities=31%  Similarity=0.482  Sum_probs=73.6

Q ss_pred             chhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC-----------------------ccc------
Q 022540          189 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG-----------------------PDI------  239 (295)
Q Consensus       189 ~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~-----------------------~~~------  239 (295)
                      ..++...+.     .+..|||||++.||..||||||+|+|+....+..                       +.+      
T Consensus         5 ~~~~~~~~~-----~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~   79 (345)
T PRK11784          5 AQDFRALFL-----NDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREE   79 (345)
T ss_pred             HHHHHHHHh-----CCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHH
Confidence            445555544     3568999999999999999999999995432100                       000      


Q ss_pred             -cccCC-CCCcEEEEeC-CChhHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          240 -TVKFD-PQKDTYVMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       240 -~~~~~-~~~~ivv~C~-~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                       ...++ ++++|||||. +|.||..++.+|...|| +++++.||+.+|...+.++
T Consensus        80 ~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~  133 (345)
T PRK11784         80 AWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDT  133 (345)
T ss_pred             HHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHH
Confidence             01122 7889999994 78999999999999999 5999999999998766543

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.56  E-value=4.2e-15  Score=136.58  Aligned_cols=93  Identities=29%  Similarity=0.438  Sum_probs=75.6

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCC---CccccCccccCCCCc--cccccCCCCCcEEEEeCCChhHH
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLP---GFQVLPLRQFGSWGP--DITVKFDPQKDTYVMCHHGMRSL  260 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIp---gAinip~~~l~~~~~--~~~~~~~~~~~ivv~C~~g~rs~  260 (295)
                      .++++++.+++.+    ...++||||++.||+.||||   ||+|||+..+..+..  ..+..++++ +|||||++|.||.
T Consensus       272 ~~~~~el~~~l~~----~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~~~~~~l~~~~~~-~Ivv~C~sG~RS~  346 (370)
T PRK05600        272 RTDTTSLIDATLN----GSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDADILHALSPIDGD-NVVVYCASGIRSA  346 (370)
T ss_pred             ccCHHHHHHHHhc----CCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcchhhhhhccccCCC-cEEEECCCChhHH
Confidence            4677888888876    34689999999999999998   599999988854310  112233455 9999999999999


Q ss_pred             HHHHHHHHcCCCc-eEEccccHhh
Q 022540          261 QVAQWLQTQGFRR-VFNVSGGIHA  283 (295)
Q Consensus       261 ~aa~~L~~~G~~~-v~~l~GG~~~  283 (295)
                      .++..|++.||++ |+++.||+.+
T Consensus       347 ~Aa~~L~~~G~~~~v~~l~GG~~~  370 (370)
T PRK05600        347 DFIEKYSHLGHELTLHNLPGGVNA  370 (370)
T ss_pred             HHHHHHHHcCCCCceEEeccccCC
Confidence            9999999999986 9999999853

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.55  E-value=6.6e-15  Score=143.07  Aligned_cols=98  Identities=18%  Similarity=0.276  Sum_probs=79.6

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHh--------hcCCCCccccCccccCCCC---------cccc--ccCCCC
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVA--------LSSLPGFQVLPLRQFGSWG---------PDIT--VKFDPQ  246 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~--------~ghIpgAinip~~~l~~~~---------~~~~--~~~~~~  246 (295)
                      .++.+++.+.+.+    .+..|||+|++.||.        .||||||+|||+..+....         ..++  ..++++
T Consensus       148 ~v~~e~v~~~l~~----~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi~~~  223 (610)
T PRK09629        148 TATREYLQSRLGA----ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPD  223 (610)
T ss_pred             cccHHHHHHhhCC----CCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCCCCC
Confidence            3667888888865    467899999999995        6999999999986542211         1111  124789


Q ss_pred             CcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccc
Q 022540          247 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK  287 (295)
Q Consensus       247 ~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~  287 (295)
                      ++||+||++|.+|+.++..|+.+||++|++++|||.+|...
T Consensus       224 ~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~  264 (610)
T PRK09629        224 KEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNH  264 (610)
T ss_pred             CCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCC
Confidence            99999999999999999999999999999999999999865

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.49  E-value=3e-14  Score=112.55  Aligned_cols=98  Identities=15%  Similarity=0.084  Sum_probs=72.3

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC---c-----------cccccC--CCCCcEE
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG---P-----------DITVKF--DPQKDTY  250 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~---~-----------~~~~~~--~~~~~iv  250 (295)
                      ++++++.+.++...  +..++||+|+..+|..||||||+|+|+..+....   .           .....+  .++++||
T Consensus         2 is~~~l~~~l~~~~--~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~VV   79 (132)
T cd01446           2 IDCAWLAALLREGG--ERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLRRGESLAVV   79 (132)
T ss_pred             cCHHHHHHHHhcCC--CCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHhcCCCCeEE
Confidence            57788888887531  3679999999999999999999999987532100   0           000011  1578999


Q ss_pred             EEeCCChh---------HHHHHHHHHH--cCCCceEEccccHhhccc
Q 022540          251 VMCHHGMR---------SLQVAQWLQT--QGFRRVFNVSGGIHAYAT  286 (295)
Q Consensus       251 v~C~~g~r---------s~~aa~~L~~--~G~~~v~~l~GG~~~W~~  286 (295)
                      |||.++.+         +..++..|..  .|+.+|++|+||+.+|..
T Consensus        80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~  126 (132)
T cd01446          80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS  126 (132)
T ss_pred             EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence            99997765         5666677776  477889999999999965

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.48  E-value=2.3e-14  Score=125.70  Aligned_cols=109  Identities=27%  Similarity=0.474  Sum_probs=89.9

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcc-ccccC-CCCCcEEEEeCCChhHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPD-ITVKF-DPQKDTYVMCHHGMRSLQ  261 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~-~~~~~-~~~~~ivv~C~~g~rs~~  261 (295)
                      ...++..++++++++.   +...++|||++.||+..|+|+|+|||+.++.....+ ....+ ...++|+|+|+.|+.|..
T Consensus       316 ~~Rvsv~d~k~il~~~---~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~~~~~~~~~~~~~~I~ViCrrGNdSQ~  392 (427)
T KOG2017|consen  316 DERVSVTDYKRILDSG---AKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSGKKLQGDLNTESKDIFVICRRGNDSQR  392 (427)
T ss_pred             hhcccHHHHHHHHhcC---CCeEEEeccCcceEEEEecccccccchhhhhhhhhhhhcccccccCCCEEEEeCCCCchHH
Confidence            3457788888888874   567999999999999999999999999888665331 11112 246789999999999999


Q ss_pred             HHHHHHHcCC-CceEEccccHhhcccccCCCCCCC
Q 022540          262 VAQWLQTQGF-RRVFNVSGGIHAYATKVDPSIPTY  295 (295)
Q Consensus       262 aa~~L~~~G~-~~v~~l~GG~~~W~~~~~p~~p~~  295 (295)
                      +++.|++... .+|+.+.||+.+|..+.+|++|.|
T Consensus       393 Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~fP~Y  427 (427)
T KOG2017|consen  393 AVRILREKFPDSSVRDVIGGLKAWAAKVDPNFPLY  427 (427)
T ss_pred             HHHHHHhhCCchhhhhhhhHHHHHHHhcCcCCCCC
Confidence            9999998654 368899999999999999999998

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.29  E-value=3.1e-12  Score=121.84  Aligned_cols=73  Identities=26%  Similarity=0.389  Sum_probs=64.3

Q ss_pred             ccceeecCcchhHHhhcCCCC----ccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEcc
Q 022540          203 KEAQLIDVREPEEVALSSLPG----FQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVS  278 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpg----Ainip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~  278 (295)
                      ++..+||+|++.||..|||||    |+|+|+..+...    ...+++++++++||++|.||..++..|++.||+||+++.
T Consensus       406 ~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~----~~~l~~~~~iivyC~~G~rS~~aa~~L~~~G~~nv~~y~  481 (482)
T PRK01269        406 PDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ----FGDLDQSKTYLLYCDRGVMSRLQALYLREQGFSNVKVYR  481 (482)
T ss_pred             CCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH----HhhcCCCCeEEEECCCCHHHHHHHHHHHHcCCccEEecC
Confidence            356899999999999999999    999999887543    334678899999999999999999999999999998875


Q ss_pred             c
Q 022540          279 G  279 (295)
Q Consensus       279 G  279 (295)
                      +
T Consensus       482 ~  482 (482)
T PRK01269        482 P  482 (482)
T ss_pred             C
Confidence            3

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.27  E-value=1.1e-11  Score=109.09  Aligned_cols=107  Identities=20%  Similarity=0.186  Sum_probs=78.5

Q ss_pred             cccchhhhhhccCCCc-cccceeecCcc--hhHHhhcCCCCccccCccccCCCCc---ccc------------ccCCCCC
Q 022540          186 DIQPDELHKKMQDPNF-HKEAQLIDVRE--PEEVALSSLPGFQVLPLRQFGSWGP---DIT------------VKFDPQK  247 (295)
Q Consensus       186 ~is~~el~~~L~~~~~-~~~~~iiDvR~--~~e~~~ghIpgAinip~~~l~~~~~---~~~------------~~~~~~~  247 (295)
                      -++++.+.+.|.+.+. ..++.+++++.  ..+|..+|||||+++++..+.....   ..+            ..+..+.
T Consensus        12 lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~d~   91 (285)
T COG2897          12 LVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRNDD   91 (285)
T ss_pred             EEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCCCC
Confidence            3677788888775210 01344555544  4889999999999999976543221   111            1236789


Q ss_pred             cEEEEeCCC-hhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          248 DTYVMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       248 ~ivv~C~~g-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      +||+|...+ .-|+.++..|+-+|+++|++|+||+.+|..+++|+.
T Consensus        92 tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~  137 (285)
T COG2897          92 TVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLE  137 (285)
T ss_pred             EEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCcc
Confidence            999999755 457899999999999999999999999999999875

>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=5.9e-12  Score=112.64  Aligned_cols=94  Identities=39%  Similarity=0.693  Sum_probs=83.7

Q ss_pred             CccEEEeeEEeccchHHHHHHHHHHhcCC-----CcHHHHHHHhCCCCCcc-CCCccccccCCCCcHHHHHHHHhCCCCc
Q 022540           87 DREILVQHLLVKEDDLNLLSELQRRVSQG-----EDLSDLAVEHSICPSKG-EGGMLGWVRKGQLVPEFEEVAFTTPLNK  160 (295)
Q Consensus        87 ~~~~~~~hIl~~~~~~~~a~~~~~~i~~g-----~~F~~~a~~~S~~~~~~-~gG~lg~~~~~~~~~~~~~~~~~l~~G~  160 (295)
                      .++++++||++..++.  +.++...++.+     .+|+++|+++|.|++.. .||++||...+.++|+|.++++.+++|+
T Consensus       166 ~~~~~~~~i~~~~~~~--a~~~~~~~~~~~~~~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g~  243 (320)
T COG0760         166 VTEVQARHILVKAEAK--AKEALALLKKGVREAKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGE  243 (320)
T ss_pred             HHHHhhcccccCchHh--HHHHHHHHHhccccccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCcc
Confidence            5789999999999987  77777777766     79999999999999554 5788899999999999999999999999


Q ss_pred             cc-cccccceeEEEeeehhhhhh
Q 022540          161 VA-RCKTKFGWHLLQVLSEREAS  182 (295)
Q Consensus       161 vs-pv~~~~G~~ii~v~~~~~~~  182 (295)
                      ++ |+++.+|||++++.+.++..
T Consensus       244 ~~~pv~t~~g~~ii~v~~~~~~~  266 (320)
T COG0760         244 VSAPVKTSFGYHIIKVEKKRDAK  266 (320)
T ss_pred             cccccccchHHHHHHHHhhhhhh
Confidence            99 99999999999998877654

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.14  E-value=3.3e-11  Score=106.09  Aligned_cols=106  Identities=18%  Similarity=0.208  Sum_probs=77.7

Q ss_pred             hhcccccchhhhhhccCCC--ccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCC---CCCcEEEEeC-C
Q 022540          182 SLLQDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD---PQKDTYVMCH-H  255 (295)
Q Consensus       182 ~~~~~is~~el~~~L~~~~--~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~---~~~~ivv~C~-~  255 (295)
                      ..+..|+++.+..+|+...  ....+.|||+|-+.||.+|||+||+||+..+..+..--......   ....+||||. +
T Consensus       153 ~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~f~~~~~~~~~~~~~i~IFhCefS  232 (325)
T KOG3772|consen  153 QDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDFFLLKDGVPSGSKRVILIFHCEFS  232 (325)
T ss_pred             ccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhhhccccccccccCceeEEEEeeec
Confidence            4566799999999887621  11235799999999999999999999998755332111111111   2356889997 6


Q ss_pred             ChhHHHHHHHHHH------------cCCCceEEccccHhhcccc
Q 022540          256 GMRSLQVAQWLQT------------QGFRRVFNVSGGIHAYATK  287 (295)
Q Consensus       256 g~rs~~aa~~L~~------------~G~~~v~~l~GG~~~W~~~  287 (295)
                      ..|...+|..|+.            +-|+.+|+|+||+..|-..
T Consensus       233 q~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~  276 (325)
T KOG3772|consen  233 QERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN  276 (325)
T ss_pred             cccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence            7899999999984            3677899999999999643

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=98.88  E-value=2.3e-09  Score=92.78  Aligned_cols=83  Identities=20%  Similarity=0.228  Sum_probs=68.8

Q ss_pred             ccceeecCcchhHHh-----------hcCCCCccccCccccCCCCcccc-----------ccCCCCCcEEEEeCCChhHH
Q 022540          203 KEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPDIT-----------VKFDPQKDTYVMCHHGMRSL  260 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~-----------~ghIpgAinip~~~l~~~~~~~~-----------~~~~~~~~ivv~C~~g~rs~  260 (295)
                      .++..+|.|...+|.           .||||||+|+|+.++-.+.+...           ..+..++|+++-|++|..+.
T Consensus       171 ~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~  250 (286)
T KOG1529|consen  171 KNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISAS  250 (286)
T ss_pred             ccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccccccCCHHHHHHHHHhcCcccCCCEEEeeccchhHH
Confidence            467899999998884           38999999999987655432221           13356899999999999999


Q ss_pred             HHHHHHHHcCCCceEEccccHhhccc
Q 022540          261 QVAQWLQTQGFRRVFNVSGGIHAYAT  286 (295)
Q Consensus       261 ~aa~~L~~~G~~~v~~l~GG~~~W~~  286 (295)
                      ..+..|.+.| .++.+++|++.+|.-
T Consensus       251 ~i~~al~r~g-~~~~lYdGS~~Ew~~  275 (286)
T KOG1529|consen  251 IIALALERSG-PDAKLYDGSWTEWAL  275 (286)
T ss_pred             HHHHHHHhcC-CCcceecccHHHHhh
Confidence            9999999999 789999999999985

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=98.43  E-value=6.2e-07  Score=77.84  Aligned_cols=102  Identities=15%  Similarity=0.179  Sum_probs=75.2

Q ss_pred             ccchhhhhhccCCCccccceeecCc---------chhHHhhcCCCCccccCccccCCCCccc---------------ccc
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVR---------EPEEVALSSLPGFQVLPLRQFGSWGPDI---------------TVK  242 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR---------~~~e~~~ghIpgAinip~~~l~~~~~~~---------------~~~  242 (295)
                      ++++-+.+.+.+    ....|||.-         ...||...|||||.++.++.........               ...
T Consensus         7 v~~~~v~~~~~~----~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG   82 (286)
T KOG1529|consen    7 VSVKWVMENLGN----HGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG   82 (286)
T ss_pred             cChHHHHHhCcC----CCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence            455566666665    467788872         3457888899999999887653221000               112


Q ss_pred             CCCCCcEEEEeC--CChh-HHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          243 FDPQKDTYVMCH--HGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       243 ~~~~~~ivv~C~--~g~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      +.+++-+|||.+  .|.- |++++.+++-.|+++|..|+||+..|+..+.|..
T Consensus        83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~  135 (286)
T KOG1529|consen   83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVD  135 (286)
T ss_pred             CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccc
Confidence            367888999998  6654 6788899999999999999999999999988754

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.16  E-value=7.6e-07  Score=77.90  Aligned_cols=102  Identities=15%  Similarity=0.206  Sum_probs=73.3

Q ss_pred             hhhcccccchhhhhhccCCCccc---cceeecCcchhHHhhcCCCCccccCccccCCCCcccc-ccCCCCCcEEEEeC-C
Q 022540          181 ASLLQDIQPDELHKKMQDPNFHK---EAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT-VKFDPQKDTYVMCH-H  255 (295)
Q Consensus       181 ~~~~~~is~~el~~~L~~~~~~~---~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~-~~~~~~~~ivv~C~-~  255 (295)
                      ...+..++++.++..++.. +..   .+.|||+|-+.||.+|||-.||||.-.+-..  ..++ .-+.--.-+|++|. +
T Consensus       238 ~Ds~~RIs~etlk~vl~g~-~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~--~~F~hkplThp~aLifHCEfS  314 (427)
T COG5105         238 SDSIQRISVETLKQVLEGM-YNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLG--LLFRHKPLTHPRALIFHCEFS  314 (427)
T ss_pred             ccchhhcCHHHHHHHHhch-hhhhhhceeEEeecceeeecCceeeeeeecchHHHHH--HHHHhccccCceeEEEEeecc
Confidence            3456678888888887642 212   3579999999999999999999997642111  0111 11223456899998 6


Q ss_pred             ChhHHHHHHHHHHc------------CCCceEEccccHhhcc
Q 022540          256 GMRSLQVAQWLQTQ------------GFRRVFNVSGGIHAYA  285 (295)
Q Consensus       256 g~rs~~aa~~L~~~------------G~~~v~~l~GG~~~W~  285 (295)
                      ..|+...|.+|+.+            -|+.|++|+||+..+-
T Consensus       315 shRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy  356 (427)
T COG5105         315 SHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFY  356 (427)
T ss_pred             cccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHh
Confidence            78999999999753            4678999999998764

>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A

Probab=98.00  E-value=1.6e-06  Score=66.51  Aligned_cols=89  Identities=22%  Similarity=0.324  Sum_probs=59.8

Q ss_pred             CCCccEEEeeEEeccchHHHHHHHHHHhc--CCCcHHHHHHHhCCCCCccCCCccccccC-CCCcHHHHHHHHhCCCCcc
Q 022540           85 GGDREILVQHLLVKEDDLNLLSELQRRVS--QGEDLSDLAVEHSICPSKGEGGMLGWVRK-GQLVPEFEEVAFTTPLNKV  161 (295)
Q Consensus        85 ~~~~~~~~~hIl~~~~~~~~a~~~~~~i~--~g~~F~~~a~~~S~~~~~~~gG~lg~~~~-~~~~~~~~~~~~~l~~G~v  161 (295)
                      ..+..+.+.+++++.+..  ++...+.++  .+.+|.+++..++.+.     ..+++... ..++++|.++++.|+.|++
T Consensus        18 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~l~~g~~   90 (121)
T PF13145_consen   18 SQPERRIFQIIFFKAEDA--AEAAKALAKKKAGEDFAALAKKYSIDQ-----SDLGIFTDESDLPPEFADALFKLKPGEV   90 (121)
T ss_dssp             --EEEEEEEEEEESSCCH--HHHHHHHHHHHCHHHHHHHHHCTHCCC-----CCCCCCETTHHH-HHHHCCHTT-STT-E
T ss_pred             CCcccEEEEEEEeCCHHH--HHHHHHHHhhcccchHHHHHHhcCCcc-----ccccccccccccCHHHHHHHhcCCCCCe
Confidence            445566666777776654  333333333  4458999988887764     23344444 3477899999999999999


Q ss_pred             c-cccccceeEEEeeehhhh
Q 022540          162 A-RCKTKFGWHLLQVLSERE  180 (295)
Q Consensus       162 s-pv~~~~G~~ii~v~~~~~  180 (295)
                      | |+.+..||+++++....+
T Consensus        91 s~~i~~~~~~~v~~v~~~~~  110 (121)
T PF13145_consen   91 SGPIESGNGYYVVKVKERNP  110 (121)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             eeeEEECCEEEEEEEEeecC
Confidence            9 899999999999988665

>PRK10788 periplasmic folding chaperone; Provisional

Probab=97.95  E-value=6e-05  Score=74.58  Aligned_cols=145  Identities=11%  Similarity=0.040  Sum_probs=97.9

Q ss_pred             cchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCCCCCCCccEEEeeEEeccch-------
Q 022540           30 SSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSPGGGDREILVQHLLVKEDD-------  101 (295)
Q Consensus        30 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~hIl~~~~~-------  101 (295)
                      .+.. ..+|+.+ +.||.|+.++.++|++||+..+.++++|+.+.+..+...+.+...+..+|+-++.=..++       
T Consensus       290 ~l~~-G~~F~~lA~~~s~d~~s~~~gGdlg~~~~~~~~~~~~~a~~~~~G~vs~pv~t~~G~~Iikv~~~~~~~~~~~~e  368 (623)
T PRK10788        290 ELKK-GADFATLAKEKSTDIISARNGGDLGWLEPATTPDELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKPLSE  368 (623)
T ss_pred             HHhC-CCCHHHHHHHhCCCcchhhcCCcccccCCCCCChHHHHHhccCCCCcCCcEEECCeEEEEEEEeeccCCCCCHHH
Confidence            4444 4699999 999999999999999999999999999999988533334456677788888777653221       


Q ss_pred             ----------H--------HHHHHHHHHhc-CCCcHHHHHHHhCCCCCccCCCccccccCCC-----CcHHHHHHHHhC-
Q 022540          102 ----------L--------NLLSELQRRVS-QGEDLSDLAVEHSICPSKGEGGMLGWVRKGQ-----LVPEFEEVAFTT-  156 (295)
Q Consensus       102 ----------~--------~~a~~~~~~i~-~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~-----~~~~~~~~~~~l-  156 (295)
                                .        ..++.+.+.+. .|.+|+++|++..-..     ...+|+..+.     -.+++..++|.. 
T Consensus       369 vk~~I~~~l~~~ka~~~~~~~~~~l~~~~~~~~~~l~~~a~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~aF~~~  443 (623)
T PRK10788        369 VRDDIAAKVKQEKALDAYYALQQKVSDAASNDNESLASAEQAAGVKA-----VQTGWFSRDNVPAELNFKPVAQAIFNGG  443 (623)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHcCCeE-----EEcCCcCCCCCccccCCHHHHHHHcChH
Confidence                      0        12334444443 4558999888754221     1112333321     135688999984 


Q ss_pred             ------CCCccc-ccccc-ceeEEEeeehhhh
Q 022540          157 ------PLNKVA-RCKTK-FGWHLLQVLSERE  180 (295)
Q Consensus       157 ------~~G~vs-pv~~~-~G~~ii~v~~~~~  180 (295)
                            ++|..| ++... .+|.++++.+..+
T Consensus       444 v~~~~~~~g~~s~~i~~~~~~~~vv~v~~~~p  475 (623)
T PRK10788        444 LVGENGAPGSNSDVITVDGDRAFVLRISEHKP  475 (623)
T ss_pred             hhhccccCCCCCCCEEEcCCEEEEEEEcccCc
Confidence                  468888 56654 5688888887654

>PF00639 Rotamase: PPIC-type PPIASE domain; InterPro: IPR000297 Peptidylprolyl isomerase (5

Probab=97.85  E-value=1.9e-06  Score=63.82  Aligned_cols=87  Identities=10%  Similarity=-0.052  Sum_probs=74.5

Q ss_pred             CchhhhhccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCC
Q 022540            9 ASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGG   86 (295)
Q Consensus         9 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~   86 (295)
                      .|+.+.+.++.....++.+++++..+...|..+ +.||++..++.++|.+||+....+.++++.+.|.+++++++ +...
T Consensus         5 ~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~~A~~yS~~~~~~~~gG~~g~~~~~~l~~~~~~~~~~l~~Gevs~pi~t   84 (95)
T PF00639_consen    5 KPPPSDEEKDAAKKKAEEIYEQLKKGEDSFAELAREYSEDSPSAENGGDLGWISRGQLPPEFEKALFALKPGEVSKPIET   84 (95)
T ss_dssp             ESTTSCCHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHCSSSCTGGGTTEEEEEETTSSBHHHHHHHHTSTTTSBEEEEEE
T ss_pred             ECCCchhhHHHHHHHHHHHHHHHHhCchhHHHHHHHhCCCcccccccCccccccCCcccHHHHHHHHhCCCCCcCCCEEE
Confidence            344578888888999999999999988789999 99999999999999999999999999999999999887654 4566


Q ss_pred             CccEEEeeE
Q 022540           87 DREILVQHL   95 (295)
Q Consensus        87 ~~~~~~~hI   95 (295)
                      +..||+-++
T Consensus        85 ~~G~~Ii~v   93 (95)
T PF00639_consen   85 DNGYHIIKV   93 (95)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            667776554

2.1.8 from EC) is an enzyme that accelerates protein folding by catalyzing the cis-trans isomerization of proline imidic peptide bonds in oligopeptides []. It has been reported in bacteria and eukayotes. Synonyms for proteins with this domain are: Peptidylprolyl isomerase, Peptidyl-prolyl cis-trans isomerase, PPIase, rotamase, cyclophilin, FKBP65.; GO: 0016853 isomerase activity; PDB: 2JZV_A 2PV3_B 1M5Y_A 2PV2_B 2PV1_A 1JNS_A 1JNT_A 3KAB_A 2ZR6_A 2XPB_A ....

>PF13616 Rotamase_3: PPIC-type PPIASE domain; PDB: 3RFW_A 3UI5_A 3UI4_A 1FJD_A 1EQ3_A 1ZK6_A

Probab=97.76  E-value=7e-06  Score=63.27  Aligned_cols=83  Identities=10%  Similarity=-0.045  Sum_probs=63.0

Q ss_pred             hhhccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEe-cccccChHhhhccccCCCCC-CCCCCCcc
Q 022540           13 LCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSSGTEGS-SPGGGDRE   89 (295)
Q Consensus        13 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~-~~~~~~~~   89 (295)
                      +....+......+.+.+.+. +.++|+.+ ..||+|+.+..++|++||+. ...+.++|+.++|.++++++ .+...+..
T Consensus        29 ~~~~~~~ak~~a~~i~~~l~-~G~dF~~lA~~yS~D~~s~~~gG~lgw~~~~~~~~~~f~~~~~~l~~G~is~~v~s~~G  107 (117)
T PF13616_consen   29 SSRSKEEAKKKADSILKQLK-SGADFAELAKKYSQDPSSAENGGDLGWMSEPSQLPPEFEEAAFSLKVGEISGPVESPNG  107 (117)
T ss_dssp             --------HHHHHHHHHHHH-CTCCHHHHHHHHTSSCGTGGGTTEEEEEETTTSSSCHHHHHHHHS-TTECTCEEEETTE
T ss_pred             ccchhHHHHHHHHHHHHHHH-CCCCHHHHHHHhCCCCcccccCCccccccCCccccHHHHHHHHcCCCCCCCCeEEECCE
Confidence            33444444566667777776 56699999 99999999999999999999 99999999999999988876 45677788


Q ss_pred             EEEeeEE
Q 022540           90 ILVQHLL   96 (295)
Q Consensus        90 ~~~~hIl   96 (295)
                      +|+-+++
T Consensus       108 ~hIikv~  114 (117)
T PF13616_consen  108 YHIIKVT  114 (117)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8877664

>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=1.9e-05  Score=61.40  Aligned_cols=76  Identities=11%  Similarity=-0.034  Sum_probs=61.5

Q ss_pred             cccccccccccCccchhccCCchhhhhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCCC-CCCCccEEE
Q 022540           17 TQSLIPTLNLSSSSSLSIFQKPASFASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSP-GGGDREILV   92 (295)
Q Consensus        17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~   92 (295)
                      |+..++.|+.|+..+..+-..|..|..-..|..++..+|+||+|.+++|-++||.++|.+.+++++. ....-.+|+
T Consensus        82 keeA~~llk~~~~~l~~g~~~f~elA~q~SdCSSaKRGGDLG~fgrgqMqk~FEdaafaL~~ge~SgiV~t~SG~Hi  158 (163)
T KOG3259|consen   82 KEEALDLLKGYHEDLKSGSGDFEELAKQRSDCSSAKRGGDLGFFGRGQMQKPFEDAAFALKVGEMSGIVDTDSGVHI  158 (163)
T ss_pred             HHHHHHHHHHhHHHhhcCcccHHHHHHhhcChhhhccCCcccccccccccccchhhhhhcccccccCceecCCceEE
Confidence            4455577889999999998899999444558899999999999999999999999999999876554 344445543

>KOG3258 consensus Parvulin-like peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.00024  Score=52.37  Aligned_cols=47  Identities=13%  Similarity=0.019  Sum_probs=41.5

Q ss_pred             hhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCC
Q 022540           32 LSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS   81 (295)
Q Consensus        32 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~   81 (295)
                      .+++ .|... .+||+|.  ++.+|+|||+.++.||-||..++|.++....
T Consensus        61 k~G~-~F~evAA~YSEdk--ar~GGDLGW~~RG~MvGPFQdaAFalpvs~~  108 (133)
T KOG3258|consen   61 KSGM-KFNEVAAQYSEDK--ARQGGDLGWMTRGSMVGPFQDAAFALPVSTV  108 (133)
T ss_pred             Hccc-chHHHHHHhccCc--cccCCcccceeccccccchhhhhhccccccc
Confidence            3444 88888 9999998  8999999999999999999999999988643

>PTZ00356 peptidyl-prolyl cis-trans isomerase (PPIase); Provisional

Probab=97.21  E-value=7.1e-05  Score=57.47  Aligned_cols=80  Identities=10%  Similarity=-0.058  Sum_probs=64.7

Q ss_pred             hccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEE
Q 022540           15 AITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILV   92 (295)
Q Consensus        15 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~   92 (295)
                      +.+......++.+++.+..+..+|+.+ ..||++ .+...+|.+||+....+.++|..+.+.+++++++ +...+..+|+
T Consensus        32 ~~~~~a~~~~~~i~~~l~~g~~~F~~la~~~S~~-~~~~~gG~lG~~~~~~L~~~~~~a~~~L~~Geis~Pi~t~~G~hI  110 (115)
T PTZ00356         32 RSKEEAIKELAKWREQIVSGEKTFEEIARQRSDC-GSAAKGGDLGFFGRGQMQKPFEDAAFALKVGEISDIVHTDSGVHI  110 (115)
T ss_pred             ccHHHHHHHHHHHHHHHHhCccCHHHHHHHhCCC-chhhcCccceeEcccccCHHHHHHHHcCCCCCCCCcEEECCEEEE
Confidence            445566667888888887776799999 999987 5667899999999999999999999999887764 5667777777


Q ss_pred             eeE
Q 022540           93 QHL   95 (295)
Q Consensus        93 ~hI   95 (295)
                      -++
T Consensus       111 lk~  113 (115)
T PTZ00356        111 ILR  113 (115)
T ss_pred             EEE
Confidence            655

>PRK15441 peptidyl-prolyl cis-trans isomerase C; Provisional

Probab=96.96  E-value=0.00055  Score=50.38  Aligned_cols=69  Identities=6%  Similarity=-0.111  Sum_probs=55.2

Q ss_pred             ccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCC-CCCCCCccEEEeeEE
Q 022540           26 LSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS-SPGGGDREILVQHLL   96 (295)
Q Consensus        26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~hIl   96 (295)
                      .+++.+..+ .+|+.+ .+||+++.. ..+|++||+....+.++|+++++.++.+++ .+...+..+|+-+++
T Consensus        20 ~i~~~l~~g-~~F~~la~~~S~~~~~-~~gG~lg~~~~~~l~~~f~~a~~~l~~G~vs~Pi~t~~G~hIlkv~   90 (93)
T PRK15441         20 DLLEQIKNG-ADFGKLAKKHSICPSG-KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL   90 (93)
T ss_pred             HHHHHHHCC-CCHHHHHHHhCCCchh-hcCccceeecccccCHHHHHHHHhCCCCCcCCcEEcCCEEEEEEEE
Confidence            344455444 699999 999999854 578999999999999999999999988765 456777888877664

>COG2603 Predicted ATPase [General function prediction only]

Probab=96.72  E-value=0.00045  Score=60.27  Aligned_cols=90  Identities=28%  Similarity=0.427  Sum_probs=61.2

Q ss_pred             hhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCC-----------C------------cccc------
Q 022540          190 DELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-----------G------------PDIT------  240 (295)
Q Consensus       190 ~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~-----------~------------~~~~------  240 (295)
                      +.++.++.     .+..++|||.+.||..|+.|+++|+|.-.-...           .            +.+.      
T Consensus         6 q~~~~~~~-----~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~a   80 (334)
T COG2603           6 QDYRALLL-----ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEA   80 (334)
T ss_pred             HHHHHHHh-----cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHH
Confidence            34455544     356899999999999999999999997321110           0            0000      


Q ss_pred             -ccCCCCCcEEEEeC-CChhHHHHHHHH-HHcCCCceEEccccHhhcc
Q 022540          241 -VKFDPQKDTYVMCH-HGMRSLQVAQWL-QTQGFRRVFNVSGGIHAYA  285 (295)
Q Consensus       241 -~~~~~~~~ivv~C~-~g~rs~~aa~~L-~~~G~~~v~~l~GG~~~W~  285 (295)
                       ..+.-+.|+-++|. +|.||...+.+| ...|++ ..-+.||+.+..
T Consensus        81 sk~f~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~-~~r~iGGeKalr  127 (334)
T COG2603          81 SKAFQEENPVGILCARGGLRSKIVQKWLGYAAGID-YPRVIGGEKALR  127 (334)
T ss_pred             HHHHHHhCCcceeeccccchhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence             01123667778897 567999999999 778864 556779987653

>TIGR02933 nifM_nitrog nitrogen fixation protein NifM

Probab=96.65  E-value=0.00057  Score=60.05  Aligned_cols=74  Identities=9%  Similarity=-0.142  Sum_probs=58.1

Q ss_pred             ccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeEE
Q 022540           22 PTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLL   96 (295)
Q Consensus        22 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl   96 (295)
                      ...+.+++.+..+...|+.+ ..||+++ ++..||++||...+.+.++|+.+.+.+++++++ |...+..+|+-.+.
T Consensus       143 ~~a~~l~~~l~~g~~~F~~lA~~~S~~~-sa~~GGdlG~~~~~~l~~~~~~~l~~L~~G~vS~Pi~s~~G~hIlkl~  218 (256)
T TIGR02933       143 TRILAILRRLRGKPAAFAEQAMRHSHCP-TAMEGGLLGWVSRGLLYPQLDAALFQLAEGELSPPIESEIGWHLLLCE  218 (256)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHhCCCC-ccccCCccCCcCCCccChHHHHHHHcCCCCCcCCceeeCCeEEEEEEe
Confidence            33445556665666789999 9999998 567899999999999999999999999887655 55667777666443

Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.

>PRK04405 prsA peptidylprolyl isomerase; Provisional

Probab=96.44  E-value=0.0032  Score=56.54  Aligned_cols=70  Identities=9%  Similarity=-0.004  Sum_probs=57.6

Q ss_pred             CccchhccCCchhh-hhhccccCCCCCCCcceeEec--ccccChHhhhccccCCCCC--CCCCCCccEEEeeEEec
Q 022540           28 SSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHII--SRSFTSPKAASFSSGTEGS--SPGGGDREILVQHLLVK   98 (295)
Q Consensus        28 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~~hIl~~   98 (295)
                      .+.+..| .+|+.+ +.||.++.+..+||++||+..  ..++++|+.++|.++++++  .|...+..||+-.++=.
T Consensus       162 ~~~l~~G-~~F~~lA~~~S~d~~~~~~GGdlG~~~~~~~~l~~~f~~a~~~L~~Geiss~pv~t~~GyhIikv~~~  236 (298)
T PRK04405        162 IKKLKDG-KDFAKLAKKYSTDTATKNKGGKLSAFDSTDTTLDSTFKTAAFKLKNGEYTTTPVKTTYGYEVIKMIKH  236 (298)
T ss_pred             HHHHHCC-CCHHHHHHHhCCCcchhhcCCcCcccccCCCCCCHHHHHHHHcCCCCCccCCCEEeCCeEEEEEEeec
Confidence            3445444 599999 999999999999999998753  5789999999999988875  47788889999888754

>PRK03095 prsA peptidylprolyl isomerase; Reviewed

Probab=95.96  E-value=0.0046  Score=55.25  Aligned_cols=71  Identities=4%  Similarity=-0.025  Sum_probs=57.9

Q ss_pred             cCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeEEec
Q 022540           27 SSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLLVK   98 (295)
Q Consensus        27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl~~   98 (295)
                      .++.+..| .+|+.+ +.||.++.+..++|.+||+....+.++|+.++|.+++++++ |...+..||+-++.=.
T Consensus       149 i~~~l~~G-~~F~~lA~~yS~d~~s~~~gG~lg~~~~~~L~~~~~~al~~L~~GevS~pi~t~~G~hIikv~~~  221 (287)
T PRK03095        149 VKEELGQG-KSFEELAKQYSEDTGSKEKGGDLGFFGAGKMVKEFEDAAYKLKKDEVSEPVKSQFGYHIIKVTDI  221 (287)
T ss_pred             HHHHHHCC-CCHHHHHHHhCCCccccccCCcCceeccccccHHHHHHHHhCCCCCcCCceEECCEEEEEEEeee
Confidence            34455555 599999 99999999999999999999999999999999999887665 4566677877777544

>PRK02998 prsA peptidylprolyl isomerase; Reviewed

Probab=95.51  E-value=0.0068  Score=54.05  Aligned_cols=72  Identities=7%  Similarity=-0.006  Sum_probs=57.7

Q ss_pred             ccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeEEec
Q 022540           26 LSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLLVK   98 (295)
Q Consensus        26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl~~   98 (295)
                      ..++.+.. ..+|+.+ +.||.++.+..++|.+||+..+.+.++|+.++|.+++++++ +...+..||+-.+.=+
T Consensus       150 ~i~~~l~~-G~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~a~~~Lk~GevS~pi~t~~G~hIikv~~~  223 (283)
T PRK02998        150 EVKEKVNN-GEDFAALAKQYSEDTGSKEQGGEISGFAPGQTVKEFEEAAYKLDAGQVSEPVKTTYGYHIIKVTDK  223 (283)
T ss_pred             HHHHHHHC-CCCHHHHHHHhCCCcchhhcCCcCCCcCCCcchHHHHHHHHcCCCCCcCCceEECCEEEEEEEecc
Confidence            34455544 4599999 99999999999999999999999999999999999887765 4566677777666543

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=95.00  E-value=0.0087  Score=56.96  Aligned_cols=97  Identities=13%  Similarity=0.092  Sum_probs=64.9

Q ss_pred             hhcccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccC-----CCCCcEEEEeCCC
Q 022540          182 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF-----DPQKDTYVMCHHG  256 (295)
Q Consensus       182 ~~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~-----~~~~~ivv~C~~g  256 (295)
                      ...+.++.+++..+       ....++|.|...||..+|+++++|+|+. +.+..-.....+     ...+.++++....
T Consensus       619 e~~prmsAedl~~~-------~~l~v~d~r~~~ef~r~~~s~s~nip~~-~~ea~l~~~~~l~~~~~~~~~~~v~~~~~~  690 (725)
T KOG1093|consen  619 EHCPRISAEDLIWL-------KMLYVLDTRQESEFQREHFSDSINIPFN-NHEADLDWLRFLPGIVCSEGKKCVVVGKND  690 (725)
T ss_pred             hcCccccHHHHHHH-------HHHHHHhHHHHHHHHHhhccccccCCcc-chHHHHHHhhcchHhHHhhCCeEEEeccch
Confidence            44555666665554       2457999999999999999999999997 222110111111     1345566665555


Q ss_pred             hhHHHHHHHHHHcCCCceEEccccHhhccc
Q 022540          257 MRSLQVAQWLQTQGFRRVFNVSGGIHAYAT  286 (295)
Q Consensus       257 ~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~  286 (295)
                      .-++.....+..+.+.+++.+.+|++....
T Consensus       691 K~~~e~~~~~~~mk~p~~cil~~~~~~~~~  720 (725)
T KOG1093|consen  691 KHAAERLTELYVMKVPRICILHDGFNNIDP  720 (725)
T ss_pred             HHHHHHhhHHHHhcccHHHHHHHHHhhcCc
Confidence            557777777777778889999999996543

>PRK03002 prsA peptidylprolyl isomerase; Reviewed

Probab=94.93  E-value=0.026  Score=50.33  Aligned_cols=68  Identities=9%  Similarity=-0.056  Sum_probs=55.9

Q ss_pred             ccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeEEe
Q 022540           29 SSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLLV   97 (295)
Q Consensus        29 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl~   97 (295)
                      ..+.. ..+|+.+ +.||.++.+...+|.+||+....+.++|+.++|.+++++++ |...+..+|+-.+.=
T Consensus       155 ~~l~~-G~~F~~lA~~~S~d~~s~~~gGdlg~~~~~~l~p~~~~a~~~L~~GevS~pI~t~~G~hIikv~~  224 (285)
T PRK03002        155 KKLDA-GASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQISNPVKSPNGYHIIKLTD  224 (285)
T ss_pred             HHHHC-CCCHHHHHHHhCCCcchhhcCCccceeccccCCHHHHHHHHcCCCCCcCCcEEECCEEEEEEEee
Confidence            34443 4699999 99999999889999999999999999999999999887654 566777777766643

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=94.43  E-value=0.0016  Score=58.83  Aligned_cols=81  Identities=11%  Similarity=0.075  Sum_probs=53.3

Q ss_pred             chhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCC--ChhH----HHH
Q 022540          189 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHH--GMRS----LQV  262 (295)
Q Consensus       189 ~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~--g~rs----~~a  262 (295)
                      ++++++.+.+     ...++|+|....|+.+||||++|+|...+..|..++.. .+..+++++.-..  +...    ..+
T Consensus        18 ~~~~~~~l~~-----~~~~~d~rg~i~~a~egIngtis~~~~~~~~~~~~l~~-~~~~~~i~l~~~~~~~~~f~~l~~~~   91 (314)
T PRK00142         18 PEAFRDEHLA-----LCKSLGLKGRILVAEEGINGTVSGTIEQTEAYMAWLKA-DPRFADIRFKISEDDGHAFPRLSVKV   91 (314)
T ss_pred             HHHHHHHHHH-----HHHHcCCeeEEEEcCCCceEEEEecHHHHHHHHHHHhh-CcCCCCceEEeccccCCCcccceeee
Confidence            4567776663     45789999999999999999999999877776555543 2234555555432  1222    344


Q ss_pred             HHHHHHcCCC-ceE
Q 022540          263 AQWLQTQGFR-RVF  275 (295)
Q Consensus       263 a~~L~~~G~~-~v~  275 (295)
                      ...|...|++ ++.
T Consensus        92 ~~eLv~~G~d~~v~  105 (314)
T PRK00142         92 RKEIVALGLDDDID  105 (314)
T ss_pred             eeeeeecCCCCCCC
Confidence            5555666764 443

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=93.42  E-value=0.095  Score=41.27  Aligned_cols=28  Identities=18%  Similarity=0.331  Sum_probs=20.5

Q ss_pred             CCCcEEEEeCCChhHHHHHHHH-HHcCCC
Q 022540          245 PQKDTYVMCHHGMRSLQVAQWL-QTQGFR  272 (295)
Q Consensus       245 ~~~~ivv~C~~g~rs~~aa~~L-~~~G~~  272 (295)
                      .+.||++||.+|.|+..++.++ ...|.+
T Consensus        85 ~~~pvL~HC~sG~Rt~~l~al~~~~~g~~  113 (135)
T TIGR01244        85 AEGPVLAYCRSGTRSSLLWGFRQAAEGVP  113 (135)
T ss_pred             CCCCEEEEcCCChHHHHHHHHHHHHcCCC
Confidence            4689999999999988776543 334543

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>PRK01326 prsA foldase protein PrsA; Reviewed

Probab=92.93  E-value=0.085  Score=47.70  Aligned_cols=52  Identities=13%  Similarity=0.050  Sum_probs=39.6

Q ss_pred             ccchhccCCchhh-hhhccccCCCCCCCcceeEeccc-ccChHhhhccccCCCCCCC
Q 022540           29 SSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISR-SFTSPKAASFSSGTEGSSP   83 (295)
Q Consensus        29 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~   83 (295)
                      +.+...+.+|+.+ ++||.   ++.+||++||+.... +.++|+.++|.+++++++.
T Consensus       164 ~~l~~~G~dF~~lA~~~S~---s~~~GGdlg~~~~~~~l~~~~~~a~~~Lk~GevS~  217 (310)
T PRK01326        164 EEAKAEGADFAQIAKENTT---TKEKKGEYKFDSGSTNVPEQVKKAAFALDEDGVSD  217 (310)
T ss_pred             HHHHhCCCCHHHHHHHhCc---ccccCCcccccCCCCcccHHHHHHHHcCCCCCcCC
Confidence            3443335699999 99987   567899999987654 4557999999998877654

>PRK12450 foldase protein PrsA; Reviewed

Probab=92.85  E-value=0.087  Score=47.61  Aligned_cols=68  Identities=7%  Similarity=-0.071  Sum_probs=48.0

Q ss_pred             CccchhccCCchhh-hhhccccCCCCCCCcceeEe-cccccChHhhhccccCCCCCCC-------CCCCccEEEeeEEec
Q 022540           28 SSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSSGTEGSSP-------GGGDREILVQHLLVK   98 (295)
Q Consensus        28 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~-------~~~~~~~~~~hIl~~   98 (295)
                      .+.+...+.+|+.+ ++||.+.   ..+|.+||.. ...++++|+.++|.+.++++++       ...+..||+-.+.=.
T Consensus       166 ~~~l~~~G~dF~~lAk~~S~~~---~~~g~~~f~~~~~~l~~ef~~aa~~Lk~GevS~~i~~~~pv~t~~GyhIikl~~~  242 (309)
T PRK12450        166 LEAVKAEGADFAAIAKEKTIAA---DKKTTYTFDSGETTLPAEVVRAASGLKEGNRSEIITALDPATSKRTYHIIKVTKK  242 (309)
T ss_pred             HHHHHhcCCCHHHHHHHhCCCc---ccCCcccccCCCCCCCHHHHHHHHcCCCCCccccccCCCccccCCceEEEEEecc
Confidence            33444334699999 9999764   3567788765 3479999999999998887653       245667777665543

>PRK00059 prsA peptidylprolyl isomerase; Provisional

Probab=91.39  E-value=0.18  Score=45.96  Aligned_cols=72  Identities=7%  Similarity=-0.157  Sum_probs=56.5

Q ss_pred             ccCccchhccCCchhh-hhhccccCCCCCCCcceeEec--ccccChHhhhccccCCCCCC-CCCCCccEEEeeEEec
Q 022540           26 LSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHII--SRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLLVK   98 (295)
Q Consensus        26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl~~   98 (295)
                      .+++.+..+ .+|+.+ ..||.++.++..+|.+||...  ..+.+++..+.|.++.++++ |...+..+|+-++.=.
T Consensus       212 ~~~~~l~~g-~~F~~la~~~s~~~~~~~~~g~lg~~~~~~~~l~~~~~~a~~~l~~Gevs~pi~~~~G~~i~~v~~~  287 (336)
T PRK00059        212 KVKKRLDKG-EDFAKVAKEVSQDPGSKDKGGDLGDVPYSDSGYDKEFMDGAKALKEGEISAPVKTQFGYHIIKAIKK  287 (336)
T ss_pred             HHHHHHHCC-CCHHHHHHHhCCCcchhhcCCcccccccccCccCHHHHHHHHcCCCCCcCccEecCCeEEEEEEEee
Confidence            344455454 499999 999999998999999999887  66788899999998887765 5667777887777544

>COG0760 SurA Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.37  E-value=0.14  Score=45.24  Aligned_cols=59  Identities=8%  Similarity=-0.047  Sum_probs=46.2

Q ss_pred             ccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEE
Q 022540           34 IFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILV   92 (295)
Q Consensus        34 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~   92 (295)
                      ...+|..+ +.++.++.....++.++|...+.++++|+.++|....++++ |......+|+
T Consensus       196 ~~~~f~~~a~~~s~~~~~~~~g~~~~~~~~~~~~p~f~~a~~~~~~g~~~~pv~t~~g~~i  256 (320)
T COG0760         196 AKADFAELAKKQSEDPSSKNGGGLLGWNKKGQLVPEFRKAAFILKVGEVSAPVKTSFGYHI  256 (320)
T ss_pred             ccCCHHHHHHHcCCCcccccCCccccccCccccChHHHHHHHhccCcccccccccchHHHH
Confidence            45799999 99999998887677888888999999999999998877544 4444444433

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=86.53  E-value=0.89  Score=34.46  Aligned_cols=22  Identities=18%  Similarity=0.249  Sum_probs=16.9

Q ss_pred             CCCcEEEEeCCChhHHHHHHHH
Q 022540          245 PQKDTYVMCHHGMRSLQVAQWL  266 (295)
Q Consensus       245 ~~~~ivv~C~~g~rs~~aa~~L  266 (295)
                      ..+||++||++|.||...+..-
T Consensus        85 ~~~Pvl~hC~sG~Ra~~l~~l~  106 (110)
T PF04273_consen   85 LPKPVLAHCRSGTRASALWALA  106 (110)
T ss_dssp             TTTSEEEE-SCSHHHHHHHHHH
T ss_pred             CCCCEEEECCCChhHHHHHHHH
Confidence            4579999999999998776543

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
1jns_A	92	Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRA		4e-14
3iwh_A	103	Crystal Structure Of Rhodanese-Like Domain Protein		2e-09
3foj_A	100	Crystal Structure Of Ssp1007 From Staphylococcus Sa		5e-08
1zk6_A	93	Nmr Solution Structure Of B. Subtilis Prsa Ppiase L		4e-07
1yw5_A	177	Peptidyl-Prolyl Isomerase Ess1 From Candida Albican		7e-07
1gn0_A	108	Escherichia Coli Glpe Sulfurtransferase Soaked With		4e-06
3ui4_A	101	0.8 A Resolution Crystal Structure Of Human Parvuli		6e-06
1fjd_A	104	Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMER		7e-06
3icr_A	588	Crystal Structure Of Oxidized Bacillus Anthracis Co		1e-05
1eq3_A	96	Nmr Structure Of Human Parvulin Hpar14 Length = 96		3e-05
2rqs_A	97	3d Structure Of Pin From The Psychrophilic Archeon		4e-05
1qxn_A	137	Solution Structure Of The 30 Kda Polysulfide-Sulfur		5e-05
3rfw_A	252	The Virulence Factor Peb4 And The Periplasmic Prote		7e-05
1gmx_A	108	Escherichia Coli Glpe Sulfurtransferase Length = 10		1e-04
1m5y_A	408	Crystallographic Structure Of Sura, A Molecular Cha		3e-04

>pdb|1JNS|A Chain A, Nmr Structure Of The E. Coli Peptidyl-Prolyl CisTRANS- Isomerase Parvulin 10 Length = 92

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 94  HLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVA 153
           H+LVKE+ L L  +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP F++V 
Sbjct: 8   HILVKEEKLAL--DLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVV 65
Query: 154 FTTP-LNKVARCKTKFGWHLLQVL 176
           F+ P L       T+FG+H+++VL
Sbjct: 66  FSCPVLEPTGPLHTQFGYHIIKVL 89

>pdb|3IWH|A Chain A, Crystal Structure Of Rhodanese-Like Domain Protein From Staphylococcus Aureus Length = 103

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 244
           + I  DEL  K+ +    K  Q++DVR  EE A   +P  +++P        PD    F+
Sbjct: 2   KSITTDELKNKLLE---SKPVQIVDVRTDEETAXGYIPNAKLIPXDTI----PDNLNSFN 54
Query: 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285
             +  Y++C  G+RS +V ++L+  G   V NV GG HA+ 
Sbjct: 55  KNEIYYIVCAGGVRSAKVVEYLEANGIDAV-NVEGGXHAWG 94

>pdb|3FOJ|A Chain A, Crystal Structure Of Ssp1007 From Staphylococcus Saprophyticus Subsp. Saprophyticus. Northeast Structural Genomics Target Syr101a Length = 100

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 244
           + I   EL +K+ D N      ++DVR  +E A   +PG + +P        PD    F+
Sbjct: 2   ESITVTELKEKILDAN---PVNIVDVRTDQETAXGIIPGAETIPXNSI----PDNLNYFN 54
Query: 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285
             +  Y++C  G RS QV Q+L+  G   V NV GG   + 
Sbjct: 55  DNETYYIICKAGGRSAQVVQYLEQNGVNAV-NVEGGXDEFG 94

>pdb|1ZK6|A Chain A, Nmr Solution Structure Of B. Subtilis Prsa Ppiase Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGW-VRKGQLVP 147
           +I   H+LV   D     E+++++ +GE   DLA E+S   S  +GG LGW  ++GQ+  
Sbjct: 4   KIRASHILVA--DKKTAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDE 61
Query: 148 EFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSE 178
            F + AF     +V+   KT++G+H+++   E
Sbjct: 62  TFSKAAFKLKTGEVSDPVKTQYGYHIIKKTEE 93

>pdb|1YW5|A Chain A, Peptidyl-Prolyl Isomerase Ess1 From Candida Albicans Length = 177

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 22/110 (20%)
Query: 87  DREILVQHLLVK--------------------EDDLNLLSELQRRVSQGE-DLSDLAVEH 125
           D ++ V HLL+K                    ++ + +L +   R+  GE  LS+LA   
Sbjct: 65  DGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTE 124
Query: 126 SICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQ 174
           S C S   GG LG+  KGQ+ P FEE AF   + +V+   +T  G H+LQ
Sbjct: 125 SDCSSHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQ 174

>pdb|1GN0|A Chain A, Escherichia Coli Glpe Sulfurtransferase Soaked With Kcn Length = 108

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 246
           I   + H+K+Q+    KEA L+D+R+P+  A+        L     G++  D     D  
Sbjct: 7   INVADAHQKLQE----KEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDN----DFD 58
Query: 247 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284
               VMC+HG  S   AQ+L  QG+  V+++ GG  A+
Sbjct: 59  TPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96

>pdb|3UI4|A Chain A, 0.8 A Resolution Crystal Structure Of Human Parvulin 14 Length = 101

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 10/93 (10%)
Query: 90  ILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEF 149
           + V+H+L ++     + E   ++  G   +++A ++S   ++ +GG LGW+ +G +V  F
Sbjct: 8   VKVRHILCEKH--GKIMEAMEKLKSGMRFNEVAAQYSEDKAR-QGGDLGWMTRGSMVGPF 64
Query: 150 EEVAFTTPLNKVAR-------CKTKFGWHLLQV 175
           +E AF  P++ + +        KTKFG+H++ V
Sbjct: 65  QEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV 97

>pdb|1FJD|A Chain A, Human Parvulin-Like Peptidyl Prolyl CisTRANS ISOMERASE, Hpar14 Length = 104

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 10/93 (10%)
Query: 90  ILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEF 149
           + V+H+L ++     + E   ++  G   +++A ++S   ++ +GG LGW+ +G +V  F
Sbjct: 11  VKVRHILCEKH--GKIMEAMEKLKSGMRFNEVAAQYSEDKAR-QGGDLGWMTRGSMVGPF 67
Query: 150 EEVAFTTPLNKVAR-------CKTKFGWHLLQV 175
           +E AF  P++ + +        KTKFG+H++ V
Sbjct: 68  QEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV 100

>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 207 LIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL 266
           LIDVREP E+    + G   +PL +      ++ V     KD Y+ C  G R    A+ L
Sbjct: 506 LIDVREPNELKQGXIKGSINIPLDELRDRLEEVPV----DKDIYITCQLGXRGYVAARXL 561
Query: 267 QTQGFRRVFNVSGGIHAYAT 286
             +G+ +V NV GG   Y T
Sbjct: 562 XEKGY-KVKNVDGGFKLYGT 580

>pdb|1EQ3|A Chain A, Nmr Structure Of Human Parvulin Hpar14 Length = 96

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 53/93 (56%), Gaps = 10/93 (10%)
Query: 90  ILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEF 149
           + V+H+L ++     + E   ++  G   +++A ++S   ++ +GG LGW+ +G +V  F
Sbjct: 3   VKVRHILCEKH--GKIMEAMEKLKSGMRFNEVAAQYSEDKAR-QGGDLGWMTRGSMVGPF 59
Query: 150 EEVAFTTPLNKVAR-------CKTKFGWHLLQV 175
           +E AF  P++ + +        KTKFG+H++ V
Sbjct: 60  QEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV 92

>pdb|2RQS|A Chain A, 3d Structure Of Pin From The Psychrophilic Archeon Cenarcheaum Symbiosum (Cspin) Length = 97

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLVP 147
           +I   H+LVK+    L   +Q R+  GE    LA E SI   S    G LG+  +G++V 
Sbjct: 9   KIKCSHILVKKQGEAL--AVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVK 66
Query: 148 EFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 176
            FE+ AF   + +V+   K++FG+H+++ L
Sbjct: 67  PFEDAAFRLQVGEVSEPVKSEFGYHVIKRL 96

>pdb|1QXN|A Chain A, Solution Structure Of The 30 Kda Polysulfide-Sulfur Transferase Homodimer From Wolinella Succinogenes Length = 137

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVK-FDP 245
           + P + +K +Q+   + +  LIDVR+P+E+     P  +       G   P +     DP
Sbjct: 25  LSPKDAYKLLQE---NPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSGLDP 81
Query: 246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 292
           +K   V C    R+    + L+  GF+ ++N  GG+  +  +  PS+
Sbjct: 82  EKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSL 128

>pdb|3RFW|A Chain A, The Virulence Factor Peb4 And The Periplasmic Protein Cj1289 Are Two Structurally-Related Sura-Like Chaperones In The Human Pathogen Campylobacter Jejuni Length = 252

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 19/97 (19%)
Query: 90  ILVQHLLV--KEDDLNLLSELQRRVSQGED--LSDLAVEHSICP-SKGEGGMLGWVRKGQ 144
           +  +H+LV  +++  ++++EL+    +  D   S+LA E SI P SK +GG LGW  +  
Sbjct: 113 VQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQST 172
Query: 145 LVPEFEEVAF--------TTPLNKVARCKTKFGWHLL 173
           +V  F + AF        TTP+      KT FG+H++
Sbjct: 173 MVKPFTDAAFALKNGTITTTPV------KTNFGYHVI 203

>pdb|1GMX|A Chain A, Escherichia Coli Glpe Sulfurtransferase Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 246
           I   + H+K+Q+    KEA L+D+R+P+  A+        L     G++  D     D  
Sbjct: 7   INVADAHQKLQE----KEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDN----DFD 58
Query: 247 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284
               VM +HG  S   AQ+L  QG+  V+++ GG  A+
Sbjct: 59  TPVMVMXYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96

>pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone That Facilitates Outer Membrane Porin Folding Length = 408

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 18/131 (13%)
Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDL----------AVEHSICP-SKGEGGML 137
           E+  +H+L+K   +  +++ Q RV   +  +D+          A E S  P S  +GG L
Sbjct: 264 EVHARHILLKPSPI--MTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDL 321
Query: 138 GWVRKGQLVPEFEEVAFTTPLNK---VARCKTKFGWHLLQVLSEREASLLQDIQPDELHK 194
           GW       P F +    T LNK    A   + FGWHL+++L  R        Q D  ++
Sbjct: 322 GWATPDIFDPAFRDA--LTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYR 379
Query: 195 KMQDPNFHKEA 205
            + +  F +EA
Sbjct: 380 MLMNRKFSEEA 390

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	2e-37
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	5e-33
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	2e-32
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	4e-31
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	6e-30
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	2e-28
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	9e-27
1tq1_A	129	AT5G66040, senescence-associated family protein; C	5e-26
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	8e-26
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	9e-26
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	3e-25
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	5e-25
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	1e-24
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	2e-24
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	4e-24
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	5e-24
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	1e-23
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	1e-21
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	2e-21
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	2e-21
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	3e-21
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	5e-21
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	6e-21
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	2e-20
2jtq_A	85	Phage shock protein E; solution structure rhodanes	8e-20
1vee_A	134	Proline-rich protein family; hypothetical protein,	2e-19
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	3e-19
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	5e-18
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	8e-18
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	8e-18
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	1e-17
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	5e-17
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	2e-16
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	6e-15
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	5e-14
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	2e-11
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	4e-11
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	6e-15
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	2e-13
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	5e-14
3r2u_A	466	Metallo-beta-lactamase family protein; structural	3e-13
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	4e-13
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	5e-13
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	4e-10
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	3e-09
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	4e-09
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	6e-07
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	4e-06
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	6e-06
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	3e-05
3rgc_A	252	Possible periplasmic protein; ppiase, chaperone; 2	1e-04
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	4e-04

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score =  128 bits (323), Expect = 2e-37
 Identities = 28/128 (21%), Positives = 47/128 (36%), Gaps = 22/128 (17%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF-------------G 233
           +   +  + +          L+DVR   EV +  LP    +PL+                
Sbjct: 3   VSVTDYKRLLDS---GAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEA 59

Query: 234 SWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRR------VFNVSGGIHAYATK 287
            W      +       YV+C  G  S +  + LQ+    +      V +V GG+ A+A K
Sbjct: 60  IWEEKQGTQEGAAVPIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAK 119

Query: 288 VDPSIPTY 295
           +D + P Y
Sbjct: 120 IDGTFPQY 127

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score =  116 bits (292), Expect = 5e-33
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 182 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITV 241
           S  + I   +L++ ++         ++DVREP E+   S+     +P+ +      +   
Sbjct: 1   SYYRSINAADLYENIKA------YTVLDVREPFELIFGSIANSINIPISEL----REKWK 50

Query: 242 KFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPTY 295
             +  K   V+C HG RS    ++L   G   + +V GGI ++  +  P +  +
Sbjct: 51  ILERDKKYAVICAHGNRSAAAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVLEH 103

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score =  114 bits (288), Expect = 2e-32
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 244
           + I   + H+K+Q+    KEA L+D+R+P+  A+        L                D
Sbjct: 5   ECINVADAHQKLQE----KEAVLVDIRDPQSFAMGHAVQAFHLTNDTL----GAFMRDND 56

Query: 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPT 294
                 VMC+HG  S   AQ+L  QG+  V+++ GG  A+  +    +  
Sbjct: 57  FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPAEVAY 106

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score =  111 bits (279), Expect = 4e-31
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 8/106 (7%)

Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 244
           + I   EL +K+ D        ++DVR  +E A+  +PG + +P+       PD    F+
Sbjct: 2   ESITVTELKEKILD---ANPVNIVDVRTDQETAMGIIPGAETIPMNSI----PDNLNYFN 54

Query: 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290
             +  Y++C  G RS QV Q+L+  G     NV GG+  +  +   
Sbjct: 55  DNETYYIICKAGGRSAQVVQYLEQNGV-NAVNVEGGMDEFGDEGLE 99

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A Length = 92

 Score =  104 bits (261), Expect = 2e-28
 Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 88  REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVP 147
           +     H+LVKE+ L    +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP
Sbjct: 2   KTAAALHILVKEEKL--ALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVP 59

Query: 148 EFEEVAFTTPLNKVAR-CKTKFGWHLLQVLS 177
            F++V F+ P+ +      T+FG+H+++VL 
Sbjct: 60  AFDKVVFSCPVLEPTGPLHTQFGYHIIKVLY 90

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 99.6 bits (249), Expect = 9e-27
 Identities = 18/102 (17%), Positives = 46/102 (45%), Gaps = 11/102 (10%)

Query: 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 243
           ++ ++P+EL   +++        ++DVR  +  +       + +PL +       +    
Sbjct: 1   MRKVRPEELPALLEEG-----VLVVDVRPADRRSTPLPFAAEWVPLEKIQKGEHGL---- 51

Query: 244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285
            P++   ++C  G+ S   A +L+ +G+    ++ GG+ A  
Sbjct: 52  -PRRPLLLVCEKGLLSQVAALYLEAEGY-EAMSLEGGLQALT 91

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score = 98.7 bits (246), Expect = 5e-26
 Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 13/130 (10%)

Query: 169 GWHLLQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLP 228
           G H    L   E+ +   +     H  +         + +DVR PEE +     G   +P
Sbjct: 2   GHHHHHHLEAEESRVPSSVSVTVAHDLLL-----AGHRYLDVRTPEEFSQGHACGAINVP 56

Query: 229 LRQFGSWG--------PDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGG 280
               G+ G          ++  F    +  V C  G RS++    L   GF  V ++ GG
Sbjct: 57  YMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGG 116

Query: 281 IHAYATKVDP 290
             A+A    P
Sbjct: 117 YSAWAKNGLP 126

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 97.3 bits (243), Expect = 8e-26
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 191 ELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTY 250
            L  +++         ++DVR+        + G   +P+          +   +  +D Y
Sbjct: 2   VLKSRLEWGE--PAFTILDVRDRSTYNDGHIMGAMAMPIEDLVD---RASSSLEKSRDIY 56

Query: 251 VMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290
           V      ++ Q    L++ GF  V  + GG+ A+     P
Sbjct: 57  VYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGP 96

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 98.2 bits (245), Expect = 9e-26
 Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 189 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKD 248
              L  +++         ++DVR+        + G   +P+          +   +  +D
Sbjct: 4   AHVLKSRLEWGE--PAFTILDVRDRSTYNDGHIMGAMAMPIEDLVD---RASSSLEKSRD 58

Query: 249 TYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290
            YV      ++ Q    L++ GF  V  + GG+ A+     P
Sbjct: 59  IYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGP 100

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis} Length = 93

 Score = 95.3 bits (238), Expect = 3e-25
 Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 86  GDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWV-RKGQ 144
           G  +I   H+LV +       E+++++ +GE   DLA E+S   S  +GG LGW  ++GQ
Sbjct: 1   GSGKIRASHILVADKKTAE--EVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQ 58

Query: 145 LVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQV 175
           +   F + AF     +V+   KT++G+H+++ 
Sbjct: 59  MDETFSKAAFKLKTGEVSDPVKTQYGYHIIKK 90

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} PDB: 3ui5_A 1fjd_A 1eq3_A Length = 101

 Score = 95.4 bits (238), Expect = 5e-25
 Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 10/101 (9%)

Query: 86  GDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQL 145
           G   + V+H+L ++     + E   ++  G   +++A ++S   ++ +GG LGW+ +G +
Sbjct: 4   GSNAVKVRHILCEKHGK--IMEAMEKLKSGMRFNEVAAQYSEDKAR-QGGDLGWMTRGSM 60

Query: 146 VPEFEEVAFTTPLNKVARC-------KTKFGWHLLQVLSER 179
           V  F+E AF  P++ + +        KTKFG+H++ V   +
Sbjct: 61  VGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 101

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 95.4 bits (238), Expect = 1e-24
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 8/112 (7%)

Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLP---GFQVLPLRQFGSWGPDITV 241
             + P + +K +Q+   + +  LIDVR+P+E+     P    ++ +   +          
Sbjct: 23  VMLSPKDAYKLLQE---NPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKS-- 77

Query: 242 KFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP 293
             DP+K   V C    R+    + L+  GF+ ++N  GG+  +  +  PS+ 
Sbjct: 78  GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD 129

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum} Length = 97

 Score = 93.4 bits (233), Expect = 2e-24
 Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 84  GGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSI-CPSKGEGGMLGWVRK 142
           G    +I   H+LVK+    L   +Q R+  GE    LA E SI   S    G LG+  +
Sbjct: 4   GSMADKIKCSHILVKKQGEAL--AVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGR 61

Query: 143 GQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 176
           G++V  FE+ AF   + +V+   K++FG+H+++ L
Sbjct: 62  GKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKRL 96

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans} Length = 112

 Score = 93.1 bits (232), Expect = 4e-24
 Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 86  GDREILVQHLLVK------EDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGW 139
           G  E  +  + +               ++  ++ QG      A ++S   +   GG LGW
Sbjct: 4   GTEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGW 63

Query: 140 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREAS 182
           +R  QL  E    A +    ++A   + + G+ +L ++ +RE  
Sbjct: 64  IRLAQLPTELATTAASMGPGQLAGPVEIRGGFSILYLIDKREGH 107

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 93.7 bits (233), Expect = 5e-24
 Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 174 QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG 233
                +  S +Q    +++ + +   +      L+DVREP E ++  +P    +P R   
Sbjct: 12  TESQSKNVSNIQSYSFEDMKRIVGKHD--PNVVLVDVREPSEYSIVHIPASINVPYRSHP 69

Query: 234 S---WGPDI------TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284
                 P          K D  K+    C  G R  +  +   + G+       G ++ +
Sbjct: 70  DAFALDPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDW 129

Query: 285 ATKVDPSI 292
            +     +
Sbjct: 130 VSHGGDKL 137

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp} Length = 110

 Score = 91.6 bits (228), Expect = 1e-23
 Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 10/102 (9%)

Query: 89  EILVQHLLVKEDDL-------NLLSELQRRVSQGE-DLSDLAVEHSICP-SKGEGGMLGW 139
           E+  +H+L+K   +         L E+   +  G+   +  A E+S  P S  +GG LGW
Sbjct: 8   EVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGW 67

Query: 140 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSERE 180
                  P F +        +++    + FGWHL+++L  R+
Sbjct: 68  ATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRK 109

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni} Length = 252

 Score = 90.6 bits (225), Expect = 1e-21
 Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 24/148 (16%)

Query: 85  GGDREILVQHLLVK--EDDLNLLSELQ--RRVSQGEDLSDLAVEHSICP-SKGEGGMLGW 139
                +  +H+LV   ++  ++++EL+  +        S+LA E SI P SK +GG LGW
Sbjct: 108 VKPARVQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGW 167

Query: 140 VRKGQLVPEFEEVAFTTPLNKVARC--KTKFGWHLLQVLSEREAS--------------L 183
             +  +V  F + AF      +     KT FG+H++   + +                 L
Sbjct: 168 FDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGL 227

Query: 184 LQDIQPDELHKKMQDPNFHKEAQLIDVR 211
             +     +++K QD      A+ ++ +
Sbjct: 228 KFEEFKKVINQKGQD--LLNSAK-VEYK 252

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ... Length = 166

 Score = 87.9 bits (218), Expect = 2e-21
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 98  KEDDLNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT 156
           KE+ L L++   +++  GE D   LA + S C S    G LG   +GQ+   FE+ +F  
Sbjct: 85  KEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFAL 144

Query: 157 PLNKVAR-CKTKFGWHLLQV 175
              +++    T  G H++  
Sbjct: 145 RTGEMSGPVFTDSGIHIILR 164

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A Length = 123

 Score = 86.7 bits (215), Expect = 2e-21
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 98  KEDDLNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT 156
           +E+ L L++   +++  GE D   LA + S C S    G LG   +GQ+   FE+ +F  
Sbjct: 42  QEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFAL 101

Query: 157 PLNKVAR-CKTKFGWHLLQV 175
              +++    T  G H++  
Sbjct: 102 RTGEMSGPVFTDSGIHIILR 121

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A Length = 103

 Score = 85.4 bits (212), Expect = 3e-21
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 89  EILVQHLLVK----------EDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLG 138
           E+ + H+L+            +  +    +  +   G D   LA+ HS       GG +G
Sbjct: 2   ELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMG 61

Query: 139 WVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER 179
           W R  +L   F +   T     +    ++  G+H+L+V   R
Sbjct: 62  WGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR 103

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1 Length = 139

 Score = 85.6 bits (212), Expect = 5e-21
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 98  KEDDLNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT 156
           +E  +  L  ++  +  G+ +  ++A   S C S   GG LG   +GQ+   FEE  +  
Sbjct: 58  REAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYAL 117

Query: 157 PLNKVAR-CKTKFGWHLLQV 175
            +  ++    T  G H+++ 
Sbjct: 118 KVGDISDIVDTDSGVHIIKR 137

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli} Length = 102

 Score = 84.6 bits (210), Expect = 6e-21
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 89  EILVQHLLVK-EDDLNLLSELQRRVSQGEDLSDLAVEHSI-CPSKGEGGMLGWVRKGQLV 146
                 +  K ED+      +   +++G D + LA E S    S   GG +GW+    + 
Sbjct: 5   RTRYSIIQTKTEDEAK---AVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIP 61

Query: 147 PEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREA 181
            E +              K+  G+ ++++   + A
Sbjct: 62  DELKNAGLKEKGQLSGVIKSSVGFLIVRLDDIQAA 96

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans} Length = 177

 Score = 85.3 bits (211), Expect = 2e-20
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 98  KEDDLNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTT 156
           +++ + +L +   R+  GE  LS+LA   S C S   GG LG+  KGQ+ P FEE AF  
Sbjct: 96  RDESIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKGQMQPPFEEAAFNL 155

Query: 157 PLNKVAR-CKTKFGWHLLQV 175
            + +V+   +T  G H+LQ 
Sbjct: 156 HVGEVSNIIETNSGVHILQR 175

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 80.7 bits (200), Expect = 8e-20
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 205 AQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ 264
              IDVR PE+     + G   +PL++            D      V C+ G +S Q  +
Sbjct: 2   EHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATAVP--DKNDTVKVYCNAGRQSGQAKE 59

Query: 265 WLQTQGFRRVFNVSGGIHAYATKVD 289
            L   G+  V N  GG+   A    
Sbjct: 60  ILSEMGYTHVENA-GGLKDIAMPKV 83

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 81.2 bits (200), Expect = 2e-19
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 14/112 (12%)

Query: 181 ASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLR---------Q 231
            S          + K+        AQL+D+R   +      P  + L  +          
Sbjct: 1   GSSGSSGSAKNAYTKLGT---DDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGED 57

Query: 232 FGSWGPDITVKFDPQKDT--YVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI 281
              +   +++KF   ++T  Y++      S  VA+ +   GF+  + +  G 
Sbjct: 58  KPGFLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGA 109

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus} Length = 111

 Score = 80.4 bits (199), Expect = 3e-19
 Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 16/104 (15%)

Query: 89  EILVQHLLVK-------------EDDLNLLSELQRRVSQG-EDLSDLAVEHSI-CPSKGE 133
                H+L+K             ++      E+Q+ VS+      ++A + S+   S  +
Sbjct: 7   SKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKK 66

Query: 134 GGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 176
            G LG+V KGQ   +FE+  F     +V+   K+ FG+H+++  
Sbjct: 67  DGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKAD 110

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 78.2 bits (192), Expect = 5e-18
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 20/116 (17%)

Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLR----QFGSWGPDIT 240
            DI P +  + + D   +  A L+DVR   E     +P    L       ++ +      
Sbjct: 5   GDITPLQAWEMLSD---NPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHN 61

Query: 241 VKF-------------DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 283
             F               ++    +C  G RS+  A+     G    +NV  G   
Sbjct: 62  DNFLAELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEG 117

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 76.6 bits (189), Expect = 8e-18
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQV 262
            +  ++DVRE +E     LP   ++ +         +       K   + C  G R+L  
Sbjct: 15  NDFIVVDVRELDEYEELHLPNATLISVNDQEKLADFL--SQHKDKKVLLHCRAGRRALDA 72

Query: 263 AQWLQTQGFRRVFNVSGGIHAYA 285
           A+ +   G+     + G ++ + 
Sbjct: 73  AKSMHELGYTPY-YLEGNVYDFE 94

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 76.6 bits (189), Expect = 8e-18
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 10/114 (8%)

Query: 180 EASLLQDIQPDELHKKMQDPNFHKEAQLIDVRE-PEEVALSSLPGFQVLPLRQFGSWGPD 238
              L   I    +   MQ+     +  ++DVR  P +V    + G   +P +   +   +
Sbjct: 10  TTYLSLYIDHHTVLADMQNAT--GKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGE 67

Query: 239 ITVKFDPQKDTYVMCHHGMRSL--QVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290
           +    DP K   V    G  +L       L + GF   + ++G +  +     P
Sbjct: 68  L----DPAKTYVVYDWTGGTTLGKTALLVLLSAGF-EAYELAGALEGWKGMQLP 116

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 77.1 bits (190), Expect = 1e-17
 Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 8/113 (7%)

Query: 174 QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG 233
           +        L  +    +L   ++    ++   ++DVR+ E      +P    +P  +  
Sbjct: 5   EAYRHYMKKLSYETDIADLSIDIKKG--YEGIIVVDVRDAEAYKECHIPTAISIPGNKIN 62

Query: 234 SWGPDITVKFDPQKDTYVMCH--HGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284
               D T +   +K     C       + + A      GF RV  + GGI  +
Sbjct: 63  E---DTTKRLSKEKVIITYCWGPACNGATKAAAKFAQLGF-RVKELIGGIEYW 111

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 75.0 bits (185), Expect = 5e-17
 Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 7/116 (6%)

Query: 173 LQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALS-SLPGFQVLPL-- 229
           ++ + +   S ++ +   +     +      +  ++D+R+P E+     +PG        
Sbjct: 10  IKAMLDEANSSIETLTTADAIALHKSGA--SDVVIVDIRDPREIERDGKIPGSFSCTRGM 67

Query: 230 --RQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 283
                    P     F   K     C  G+RS   A+  Q  G + V ++ GG  A
Sbjct: 68  LEFWIDPQSPYAKPIFQEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid} Length = 325

 Score = 77.3 bits (190), Expect = 2e-16
 Identities = 14/148 (9%), Positives = 51/148 (34%), Gaps = 22/148 (14%)

Query: 89  EILVQHLLVKEDDLN--------LLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGW 139
              +  +  + D +         +    +  ++     + +A      P  +   GM+ W
Sbjct: 161 RYRIISIAPENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALRARRGMVEW 220

Query: 140 VRKGQLVPEFE---EVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQP---DEL 192
           +    L    +    +A   P   V+   + +   + +  +  +  + +++++    + L
Sbjct: 221 ISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRPTPMENLRGGIQNIL 280

Query: 193 HKKMQDPNFHKEAQ------LIDVREPE 214
           ++  ++  FH+  +       I + +  
Sbjct: 281 YRDKEEDTFHRWLKESRAEIPIQIFDEA 308

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 73.6 bits (180), Expect = 6e-15
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 5/100 (5%)

Query: 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 243
           +      ++   +      +E  L+DVRE +  A +       LPL +            
Sbjct: 6   IAVRTFHDIRAALLA---RRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVP-- 60

Query: 244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 283
                  V       +   AQ L   G+  V  + GG+  
Sbjct: 61  RRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSG 100

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 70.9 bits (173), Expect = 5e-14
 Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 244
             I P  L   + +P      +++D       A   +PG   +   Q       +     
Sbjct: 377 DTIDPTTLADWLGEPG----TRVLDFTASANYAKRHIPGAAWVLRSQLKQALERL----G 428

Query: 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA 283
             +   + C   + +      +Q    + VF + GG  A
Sbjct: 429 TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSA 467

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 63.2 bits (153), Expect = 2e-11
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 10/143 (6%)

Query: 133 EGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDEL 192
             G +GW   GQ +   +   F        +   +    +       + + ++ +    L
Sbjct: 219 RNGTIGWTLAGQQLEHGQTRRFGAISQDTRKAAAQRARAV------ADRAGVERLDLAGL 272

Query: 193 HKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVM 252
            +   + +  +   L+DVR PEE     LPG +  P  Q       +           ++
Sbjct: 273 AQWQDEHD--RTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVAS--VRGARLVLV 328

Query: 253 CHHGMRSLQVAQWLQTQGFRRVF 275
              G+R+   A WL   G++   
Sbjct: 329 DDDGVRANMSASWLAQMGWQVAV 351

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 62.1 bits (150), Expect = 4e-11
 Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 23/153 (15%)

Query: 133 EGGMLGWVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDEL 192
           +GG+ GW   G                     +                     +  +E+
Sbjct: 95  DGGLSGWRNAGG-----------------ELFRDVNVPSKAFGELVEAERHTPSLAAEEV 137

Query: 193 HKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVM 252
              +       EA ++D R  +E    S+PG   +P  +      ++    DP+    V 
Sbjct: 138 QALLDA---RAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAEL--APDPRTRVIVN 192

Query: 253 CHHGMRSLQVAQWLQTQGFRRVF-NVSGGIHAY 284
           C    RS+   Q L   G       +  G   +
Sbjct: 193 CAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGW 225

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408

 Score = 73.6 bits (180), Expect = 6e-15
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 25/188 (13%)

Query: 33  SIFQKPASFASFYKSLNPASNSNSFH----IHIISRSFTSPKAASFSSGTEGSSPGGGDR 88
            I + P  FA    +                HI+  +              G S      
Sbjct: 215 RIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVN-----------DLRGESKNISVT 263

Query: 89  EILVQHLLVK-------EDDLNLLSELQRRVSQGE-DLSDLAVEHSICP-SKGEGGMLGW 139
           E+  +H+L+K       E     L ++   +  G+   +  A E S  P S  +GG LGW
Sbjct: 264 EVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGW 323

Query: 140 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQD 198
                  P F +        +++    + FGWHL+++L  R        Q D  ++ + +
Sbjct: 324 ATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMN 383

Query: 199 PNFHKEAQ 206
             F +EA 
Sbjct: 384 RKFSEEAA 391

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A Length = 408

 Score = 68.9 bits (168), Expect = 2e-13
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)

Query: 98  KEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTP 157
             +  +    +  +   G D   LA+ HS       GG +GW R  +L   F +   T  
Sbjct: 172 VNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAK 231

Query: 158 LNKVAR-CKTKFGWHLLQVLSEREAS 182
              +    ++  G+H+L+V   R  S
Sbjct: 232 KGDIVGPIRSGVGFHILKVNDLRGES 257

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 70.8 bits (173), Expect = 5e-14
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 179 REASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPD 238
            + +   ++ PDE+   +      +   L+DVR  +E A   LP    +PL +  +   D
Sbjct: 368 DDVASYANVSPDEVRGALA----QQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHIHD 423

Query: 239 ITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285
           +           V C  G RS   A  L+  G   V N+ GG  A+ 
Sbjct: 424 V----PRDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYEAWR 466

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 68.5 bits (167), Expect = 3e-13
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 8/141 (5%)

Query: 143 GQLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSEREASLLQDIQPDELHKKMQDPNFH 202
           G  +   +E+      + V++        L  +  +  A         +      +    
Sbjct: 330 GWYLNYDQEINLIGDYHLVSKATH----TLQLIGYDDIAGYQLPQSKIQTRSIHSEDITG 385

Query: 203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQV 262
            E+ ++DVR   E     L     +P  +      +  + F+     YV C  G+RS   
Sbjct: 386 NESHILDVRNDNEWNNGHLSQAVHVPHGKL----LETDLPFNKNDVIYVHCQSGIRSSIA 441

Query: 263 AQWLQTQGFRRVFNVSGGIHA 283
              L+ +G+  + NV+ G   
Sbjct: 442 IGILEHKGYHNIINVNEGYKD 462

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 68.0 bits (167), Expect = 4e-13
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 11/111 (9%)

Query: 174 QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG 233
            V S         I  D++    +D        L+DVR P E+    L G   +P+ +  
Sbjct: 462 FVASNIIKGDATPIHFDQIDNLSED------QLLLDVRNPGELQNGGLEGAVNIPVDELR 515

Query: 234 SWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284
               ++       K+  +    G+R     + L   G+ R  N+ GG   Y
Sbjct: 516 DRMHEL----PKDKEIIIFSQVGLRGNVAYRQLVNNGY-RARNLIGGYRTY 561

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 10/113 (8%)

Query: 174 QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG 233
              S      +  +Q  E+ + +++        LIDVREP E+    + G   +PL +  
Sbjct: 478 YAASNIVDGFVDTVQWHEIDRIVEN-----GGYLIDVREPNELKQGMIKGSINIPLDEL- 531

Query: 234 SWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 286
               D   +    KD Y+ C  GMR    A+ L  +G+ +V NV GG   Y T
Sbjct: 532 ---RDRLEEVPVDKDIYITCQLGMRGYVAARMLMEKGY-KVKNVDGGFKLYGT 580

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 56.5 bits (136), Expect = 4e-10
 Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 15/114 (13%)

Query: 180 EASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI 239
            A  +  I   +L    + PN      +IDVR+ E      + G        F      +
Sbjct: 23  MARSISYITSTQLLPLHRRPNI----AIIDVRDEERNYDGHIAGSLHYASGSFDDKISHL 78

Query: 240 TVKFDPQKDTYV--MCHHGMRSLQVAQWL--------QTQGFRRVFNVSGGIHA 283
                  KDT V       +R    A+ L        +  G + +  +  G + 
Sbjct: 79  VQNV-KDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 53.9 bits (129), Expect = 3e-09
 Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 11/116 (9%)

Query: 182 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF-GSWGPDIT 240
           +    I+P+EL + + +P+   +A +ID R   +     +     +P           + 
Sbjct: 2   TNYTYIKPEELVELLDNPDSLVKAAVIDCR-DSDRDCGFIVNSINMPTISCTEEMYEKLA 60

Query: 241 VKFDPQKDTYVMCH---HGMRSLQVAQWLQTQ------GFRRVFNVSGGIHAYATK 287
                +K    + H     +R+ + A                V+ + GG  A+   
Sbjct: 61  KTLFEEKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHM 116

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 53.2 bits (127), Expect = 4e-09
 Identities = 18/115 (15%), Positives = 29/115 (25%), Gaps = 32/115 (27%)

Query: 201 FHKEAQLIDVREPEEVALSSLPGFQVLPL------------------------------R 230
              +   +DVR   E     +     +PL                               
Sbjct: 14  KLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSY 73

Query: 231 QFGSWGPDITVKFDPQKDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284
           +                +  + C   GMRS  +   L + G   V+ + GG  AY
Sbjct: 74  KLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAY 127

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 21/133 (15%), Positives = 47/133 (35%), Gaps = 17/133 (12%)

Query: 171 HLLQVLSEREASLLQDIQPDELHKKMQD--PNFHKEAQLIDVREPEEVALSSLPGFQVLP 228
           +L   ++ +   L + I P+ +   +     N  KE  +ID R P E     + G   L 
Sbjct: 10  YLFHTVAGKHQDL-KYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLH 68

Query: 229 LRQFGSWG--PDITVKFDPQKDTYVMC--HHGMRSLQVAQWLQTQ----------GFRRV 274
           + +           V  D ++   V        R  ++ ++++ +           +  +
Sbjct: 69  MEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPEL 128

Query: 275 FNVSGGIHAYATK 287
           + + GG   +  K
Sbjct: 129 YVLKGGYKEFFMK 141

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 3e-07
 Identities = 42/286 (14%), Positives = 78/286 (27%), Gaps = 89/286 (31%)

Query: 15  AITQSLIP--TLNLSSSSSLSIFQKPASFASFYKSLN------P--ASNSNSFHIHIISR 64
            +T  L    T ++S              +   K L+      P     +N   + II  
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-- 333

Query: 65  SFTSPKAASFSSGTEGSSPGGGDREILVQHLLVK------EDDLNLLS--ELQRRVSQGE 116
                 A S   G               +H+         E  LN+L   E ++      
Sbjct: 334 ------AESIRDGL--------ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM----- 374

Query: 117 DLSDLAV--EHSICPSKGEGGMLG--WVRKGQLVPEFEEVAFTTPLNKVARCKTKFGWHL 172
               L+V    +  P+     +L   W     ++     V        V +        L
Sbjct: 375 -FDRLSVFPPSAHIPTI----LLSLIW---FDVIKSDVMVV-------VNKLHKYS---L 416

Query: 173 LQVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQF 232
           ++   +     +  I  +   K   +   H+   ++D                    + F
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHR--SIVD---------------HYNIPKTF 459

Query: 233 GSWGPDITVKFDPQKDTYVMCH---HGMRSLQVAQWLQTQGFRRVF 275
            S          P  D Y   H   H +++++  +  +   FR VF
Sbjct: 460 DSDDL-----IPPYLDQYFYSHIGHH-LKNIEHPE--RMTLFRMVF 497

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 25/213 (11%), Positives = 63/213 (29%), Gaps = 64/213 (30%)

Query: 88  REILVQHLL---VKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGG-MLGWV--R 141
           ++IL        V   D   + ++ + +   E++  + +          G   L W    
Sbjct: 19  KDIL-SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS----KDAVSGTLRLFWTLLS 73

Query: 142 KG-QLVPEFEEVAFTTPLNKVARCKTKFGWHLLQVLSE-REASLLQDIQPDELHKKMQDP 199
           K  ++V +F E             +  + + +  + +E R+ S++  +  ++  +   D 
Sbjct: 74  KQEEMVQKFVEEVL----------RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 200 N-FHKEAQLIDVREPEEV-----ALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMC 253
             F K     +V   +       AL          LR       ++ +            
Sbjct: 124 QVFAK----YNVSRLQPYLKLRQALLE--------LRP----AKNVLI------------ 155

Query: 254 HHGM----RSLQVAQWLQTQGFRRVFNVSGGIH 282
             G+    ++        +   +   +    I 
Sbjct: 156 -DGVLGSGKTWVALDVCLSYKVQCKMD--FKIF 185

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 19/131 (14%), Positives = 44/131 (33%), Gaps = 18/131 (13%)

Query: 171 HLLQVLSEREASLLQDIQPDELHKKMQD--PNFHKEAQLIDVREPEEVALSSLPGFQVLP 228
            LLQ +  +   L + I P+ +   +     N   +  ++D R P E     +     LP
Sbjct: 11  FLLQTVDGKHQDL-KYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLP 69

Query: 229 LRQFGSWG--PDITVKFDPQKDTYVMCH---HGMRSLQVAQWLQTQ----------GFRR 273
           L +                 K   ++ H      R  ++ ++++ +           +  
Sbjct: 70  LERDAESFLLKSPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPE 129

Query: 274 VFNVSGGIHAY 284
           ++ + GG   +
Sbjct: 130 MYILKGGYKEF 140

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 18/134 (13%)

Query: 171 HLLQVLSEREASLLQDIQPDELHKKMQD--PNFHKEAQLIDVREPEEVALSSLPGFQVLP 228
            LLQ +  +   L + I P+ +   +     N   +  ++D R P E     +     LP
Sbjct: 31  FLLQTVDGKHQDL-KYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLP 89

Query: 229 LRQFGSW--GPDITVKFDPQKDTYVMCH---HGMRSLQVAQWLQTQ----------GFRR 273
           L +                 K   ++ H      R  ++ ++++ +           +  
Sbjct: 90  LERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPE 149

Query: 274 VFNVSGGIHAYATK 287
           ++ + GG   +  +
Sbjct: 150 MYILKGGYKEFFPQ 163

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 45.5 bits (107), Expect = 6e-06
 Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 17/121 (14%)

Query: 184 LQDIQPDELHKKMQD--PNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQ--FGSWGPDI 239
           L+ + P+ +   +        ++  +ID R P E     + G   L  ++  F  +    
Sbjct: 56  LKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNFFLKKP 115

Query: 240 TVKFDPQKDTYVMCHH---GMRSLQVAQWLQTQ----------GFRRVFNVSGGIHAYAT 286
            V  D QK   ++ H      R  ++ + L+ +           +  ++ + GG   +  
Sbjct: 116 IVPLDTQKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFP 175

Query: 287 K 287
           +
Sbjct: 176 E 176

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 21/135 (15%)

Query: 173 LQVLSEREASLLQDIQPDELHKKMQD---PNFHKEAQLIDVREPEEVALSSLPGFQVLPL 229
            Q +     + ++ + P ELH+ MQ+       +  Q++DVR   +     +        
Sbjct: 19  FQGMDSYSITNVKYLDPTELHRWMQEGHTTTLREPFQVVDVR-GSDYMGGHIKDGWHYAY 77

Query: 230 RQFGSWGPDI--------TVKFDPQKDTYVMCH---HGMRSLQVAQWLQTQ------GFR 272
            +       +          + D +    V+ H      R    A  L            
Sbjct: 78  SRLKQDPEYLRELKHRLLEKQADGRGALNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRC 137

Query: 273 RVFNVSGGIHAYATK 287
           R++ + GG   + + 
Sbjct: 138 RLWVLRGGFSRWQSV 152

>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni} Length = 252

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 1/55 (1%)

Query: 129 PSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSEREAS 182
                      +      P    +    P+   +     K G+ L +V S+    
Sbjct: 156 KKTILKPQNASLNTSNADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKSKDGTQ 210

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp} Length = 265

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 12/109 (11%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPG---FQVLPLRQFGSWGPDITVKF 243
           + P+E H+ +QDPN      L+D R   E  L +        +   R+F  +   +    
Sbjct: 124 LSPEEWHQFIQDPNVI----LLDTRNDYEYELGTFKNAINPDIENFREFPDY---VQRNL 176

Query: 244 DPQKD-TYVM-CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290
             +KD    M C  G+R  +   +++  GF  V+ +  GI  Y   +  
Sbjct: 177 IDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNYLESIPE 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.92
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.92
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	99.91
2lj4_A	115	Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT;	99.91
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	99.91
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.91
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	99.9
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	99.9
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	99.89
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.89
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	99.89
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	99.89
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	99.89
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.89
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	99.89
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.89
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.88
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	99.88
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	99.88
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.88
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	99.87
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.87
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.87
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.87
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.87
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.87
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.86
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	99.86
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.86
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.84
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.84
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	99.84
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.83
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.81
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.81
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.8
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.8
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.78
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.77
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.77
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	99.76
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.76
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.76
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.76
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.76
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.75
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.74
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.74
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.74
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.74
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.74
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.73
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.73
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.72
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.72
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.72
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.72
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.71
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.71
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	99.7
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.7
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.7
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.7
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.7
1m5y_A	408	SurviVal protein, surviVal protein SURA; surviVal	99.69
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.69
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.68
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.67
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.67
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.67
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.66
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.65
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.64
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.64
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.63
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.62
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.59
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.58
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.58
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.46
3rgc_A	252	Possible periplasmic protein; ppiase, chaperone; 2	99.41
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.24
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.17
2lj4_A	115	Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT;	98.58
4g2p_A	110	Chaperone SURA; structural genomics, PSI-biology,	98.31
3i6c_A	123	Peptidyl-prolyl CIS-trans isomerase NIMA- interact	98.06
3gpk_A	112	PPIC-type peptidyl-prolyl CIS-trans isomerase; rot	98.02
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	97.89
2pv1_A	103	Chaperone SURA; surviVal protein A, peptidyl-proly	97.74
2jzv_A	111	Foldase protein PRSA; ppiase, parvulin, proline is	97.73
1zk6_A	93	Foldase protein PRSA; alpha/beta structure, isomer	97.64
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	97.64
1j6y_A	139	Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN	97.6
2rqs_A	97	Parvulin-like peptidyl-prolyl isomerase; CIS/trans	97.57
3ui4_A	101	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	97.56
2kgj_A	102	Peptidyl-prolyl CIS-trans isomerase D; prolyl isom	97.55
1jns_A	92	Peptidyl-prolyl CIS-trans isomerase C; alpha-beta	97.54
2f46_A	156	Hypothetical protein; structural genomics, joint c	97.31
3nrk_A	325	LIC12922; NC domain, parvulin domain, SURA homolog	96.72
3rfw_A	252	Cell-binding factor 2; SURA-like, chaperone; 2.20A	96.36
1v8c_A	168	MOAD related protein; riken structural genomics/pr	87.49
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	84.81

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.92  E-value=8.2e-26  Score=169.90  Aligned_cols=100  Identities=30%  Similarity=0.567  Sum_probs=88.8

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHH
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  264 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~  264 (295)
                      ..++++++++.+.+.   +.+.|||||++.||..||||||+|||++.|...    +..++++++|||||++|.||..++.
T Consensus         2 k~Is~~el~~~l~~~---~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~----~~~l~~~~~ivv~C~~G~rS~~aa~   74 (103)
T 3iwh_A            2 KSITTDELKNKLLES---KPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDN----LNSFNKNEIYYIVCAGGVRSAKVVE   74 (103)
T ss_dssp             CEECHHHHHHGGGSS---SCCEEEECSCHHHHTTCBCTTCEECCGGGGGGC----GGGCCTTSEEEEECSSSSHHHHHHH
T ss_pred             CCcCHHHHHHHHhCC---CCeEEEECCChhHHhcCccCCcccCcccchhhh----hhhhcCCCeEEEECCCCHHHHHHHH
Confidence            357889999988764   567899999999999999999999999988654    4557899999999999999999999


Q ss_pred             HHHHcCCCceEEccccHhhcccccCCCC
Q 022540          265 WLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       265 ~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      .|++.||++ ++|.||+.+|..+++|..
T Consensus        75 ~L~~~G~~~-~~l~GG~~~W~~~g~pve  101 (103)
T 3iwh_A           75 YLEANGIDA-VNVEGGMHAWGDEGLEIK  101 (103)
T ss_dssp             HHHTTTCEE-EEETTHHHHHCSSSCBCC
T ss_pred             HHHHcCCCE-EEecChHHHHHHCCCcce
Confidence            999999965 579999999999999875

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.92  E-value=4.6e-25  Score=165.09  Aligned_cols=98  Identities=29%  Similarity=0.548  Sum_probs=87.9

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHH
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQW  265 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~  265 (295)
                      .++++++.+++.+.   ++..|||||++.||..||||||+|+|+..+...    +..++++++|||||++|.||..++..
T Consensus         3 ~is~~el~~~l~~~---~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~----~~~l~~~~~ivvyC~~g~rs~~a~~~   75 (100)
T 3foj_A            3 SITVTELKEKILDA---NPVNIVDVRTDQETAMGIIPGAETIPMNSIPDN----LNYFNDNETYYIICKAGGRSAQVVQY   75 (100)
T ss_dssp             EECHHHHHHGGGSS---SCCEEEECSCHHHHTTCBCTTCEECCGGGGGGC----GGGSCTTSEEEEECSSSHHHHHHHHH
T ss_pred             ccCHHHHHHHHhcC---CCcEEEECCCHHHHhcCcCCCCEECCHHHHHHH----HHhCCCCCcEEEEcCCCchHHHHHHH
Confidence            47788999988543   578999999999999999999999999988654    45568999999999999999999999


Q ss_pred             HHHcCCCceEEccccHhhcccccCCC
Q 022540          266 LQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       266 L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      |+..|| +|++|+||+.+|..++.|+
T Consensus        76 L~~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           76 LEQNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             HHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             HHHCCC-CEEEecccHHHHHHcCCCC
Confidence            999999 9999999999999998874

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}

Probab=99.91  E-value=7.1e-25  Score=166.54  Aligned_cols=95  Identities=27%  Similarity=0.508  Sum_probs=88.6

Q ss_pred             CCCccEEEeeEEeccc-------hHHHHHHHHHHhcCCC-cHHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHh
Q 022540           85 GGDREILVQHLLVKED-------DLNLLSELQRRVSQGE-DLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFT  155 (295)
Q Consensus        85 ~~~~~~~~~hIl~~~~-------~~~~a~~~~~~i~~g~-~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~  155 (295)
                      ...++|+++||||+.+       ++++|++++++|++|+ +|++||++||+|+ ++.+||+|||+..++|+|+|.+++|+
T Consensus         4 ~~~~~v~~~hIli~~~~~~~~~~a~~~a~~i~~~l~~G~~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~   83 (110)
T 4g2p_A            4 ISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTK   83 (110)
T ss_dssp             CCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHT
T ss_pred             ccccEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCccccccccccCeecccccCHHHHHHHHc
Confidence            4578999999999963       3678999999999999 9999999999998 99999999999999999999999999


Q ss_pred             CCCCccc-cccccceeEEEeeehhh
Q 022540          156 TPLNKVA-RCKTKFGWHLLQVLSER  179 (295)
Q Consensus       156 l~~G~vs-pv~~~~G~~ii~v~~~~  179 (295)
                      |++|++| ||++++||||+++.+++
T Consensus        84 l~~Geis~pv~t~~G~hIikv~~~r  108 (110)
T 4g2p_A           84 LHKGQISAPVHSSFGWHLIELLDTR  108 (110)
T ss_dssp             CCTTCBCCCEEETTEEEEEEEEEEE
T ss_pred             CCCCCcCccEEECCEEEEEEEEEEe
Confidence            9999999 99999999999998865

>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}

Probab=99.91  E-value=6.2e-25  Score=167.87  Aligned_cols=90  Identities=27%  Similarity=0.505  Sum_probs=83.1

Q ss_pred             CccEEEeeEEeccc---------------------hHHHHHHHHHHhcCCC-cHHHHHHHhCCCCCccCCCccccccCCC
Q 022540           87 DREILVQHLLVKED---------------------DLNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWVRKGQ  144 (295)
Q Consensus        87 ~~~~~~~hIl~~~~---------------------~~~~a~~~~~~i~~g~-~F~~~a~~~S~~~~~~~gG~lg~~~~~~  144 (295)
                      +++++++||||+.+                     +++++++++++|++|+ +|+++|++||+++++.+||+|||+..++
T Consensus         2 pe~vrasHILi~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~sa~~GGdLG~~~~~~   81 (115)
T 2lj4_A            2 SEKLRAAHLLVKFSGSRNPVSRRTGDSTADVTYEDAIKELQKWSQRIASGEVSFEEAASQRSDCGSYASGGDLGFFSSGE   81 (115)
T ss_dssp             CCEEEEEEEEECCTTSSCCCCTTTSSCCTTSCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGTTSEEEEEETTS
T ss_pred             CCcEEEEEEEEecCCccChhhhhhccccccccHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCcccccCCccceecCCC
Confidence            57899999999632                     3567999999999996 9999999999888999999999999999


Q ss_pred             CcHHHHHHHHhCCCCccc-cccccceeEEEeee
Q 022540          145 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  176 (295)
Q Consensus       145 ~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~  176 (295)
                      |+|+|++++|+|++|++| ||+|++|||||+++
T Consensus        82 ~~~~f~~a~~~l~~GeiS~pv~t~~G~HIIkl~  114 (115)
T 2lj4_A           82 MMKPFEDAVRALKIGDISPIVQTDSGLHIIKRL  114 (115)
T ss_dssp             SCHHHHHHHTTSCBTCBCCCEECSSSEEEEEEC
T ss_pred             CCchHHHHHhcCCCCCCCCcEEeCCeEEEEEEe
Confidence            999999999999999999 99999999999875

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}

Probab=99.91  E-value=9e-25  Score=165.97  Aligned_cols=96  Identities=22%  Similarity=0.381  Sum_probs=88.6

Q ss_pred             CCccEEEeeEEeccc------hHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCC
Q 022540           86 GDREILVQHLLVKED------DLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLN  159 (295)
Q Consensus        86 ~~~~~~~~hIl~~~~------~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G  159 (295)
                      .+++|+++||||+..      ++++|++++++|++|++|++||++||+|+++.+||+|||+..++++|+|.+++|+|++|
T Consensus         4 ~~~~~~v~hIli~~~~~~~~~a~~~A~~i~~~l~~G~~F~~lA~~~S~d~sa~~GGdlG~~~~~~l~~~f~~a~~~l~~G   83 (112)
T 3gpk_A            4 GTEEYRIGEIFLAATEENKPQVFANAEKIVEQLKQGGSFVAYARQYSEASTAAVGGDLGWIRLAQLPTELATTAASMGPG   83 (112)
T ss_dssp             -CCEEEEEEEEEECCGGGHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHHHHCCTT
T ss_pred             CCcEEEEEEEEEeCChhhHHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCcchhcCcccceEcccccCHHHHHHHHhCCCC
Confidence            467999999999965      24679999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc-cccccceeEEEeeehhhhh
Q 022540          160 KVA-RCKTKFGWHLLQVLSEREA  181 (295)
Q Consensus       160 ~vs-pv~~~~G~~ii~v~~~~~~  181 (295)
                      ++| ||++++||||+++.+.++.
T Consensus        84 eiS~pv~t~~G~hIikv~~~~~~  106 (112)
T 3gpk_A           84 QLAGPVEIRGGFSILYLIDKREG  106 (112)
T ss_dssp             CEEEEEEETTEEEEEEEEEEECC
T ss_pred             CccceEEECCEEEEEEEEeEecc
Confidence            999 9999999999999987653

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A

Probab=99.90  E-value=2.7e-24  Score=158.32  Aligned_cols=89  Identities=40%  Similarity=0.758  Sum_probs=84.4

Q ss_pred             ccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCCccc-cccc
Q 022540           88 REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT  166 (295)
Q Consensus        88 ~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~  166 (295)
                      ++++++|||++.+++  |++++++|++|++|+++|++||+|+++.+||+|||+..++++++|.+++++|++|++| ||++
T Consensus         2 ~~~~~~hIl~~~~~~--A~~i~~~l~~g~~F~~lA~~~S~~~s~~~gGdlg~~~~~~l~~~f~~a~~~l~~G~is~pv~t   79 (92)
T 1jns_A            2 KTAAALHILVKEEKL--ALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHT   79 (92)
T ss_dssp             CEEEEEEEEESSHHH--HHHHHHHHHHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEEEEEE
T ss_pred             CEEEEEEEEeCCHHH--HHHHHHHHHCCCCHHHHHHHhCCCcchhcCCeeeEEcCcccCHHHHHHHHhCCCCCcCCcEEE
Confidence            579999999998765  9999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             cceeEEEeeehh
Q 022540          167 KFGWHLLQVLSE  178 (295)
Q Consensus       167 ~~G~~ii~v~~~  178 (295)
                      ++||||+++.++
T Consensus        80 ~~G~hIi~v~~~   91 (92)
T 1jns_A           80 QFGYHIIKVLYR   91 (92)
T ss_dssp             TTEEEEEEEECC
T ss_pred             CCEEEEEEEEee
Confidence            999999998764

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A

Probab=99.90  E-value=3.3e-24  Score=165.46  Aligned_cols=94  Identities=29%  Similarity=0.469  Sum_probs=82.9

Q ss_pred             CCCCCccEEEeeEEecc-------------------chHHHHHHHHHHhcCC-CcHHHHHHHhCCCCCccCCCccccccC
Q 022540           83 PGGGDREILVQHLLVKE-------------------DDLNLLSELQRRVSQG-EDLSDLAVEHSICPSKGEGGMLGWVRK  142 (295)
Q Consensus        83 ~~~~~~~~~~~hIl~~~-------------------~~~~~a~~~~~~i~~g-~~F~~~a~~~S~~~~~~~gG~lg~~~~  142 (295)
                      .+..+++|+++||||+.                   ++++.+++|+++|++| ++|++||++||+|+++.+||+|||+..
T Consensus         8 ~~~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~~sa~~GGdLG~~~~   87 (123)
T 3i6c_A            8 GQGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSR   87 (123)
T ss_dssp             ---CCSEEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEEET
T ss_pred             ccCCCcEEEEEEEEEecCCccCccccchhhhhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCchhhhCCceeeEcC
Confidence            34678899999999983                   1345677777899999 699999999999889999999999999


Q ss_pred             CCCcHHHHHHHHhCCCCccc-cccccceeEEEeee
Q 022540          143 GQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  176 (295)
Q Consensus       143 ~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~  176 (295)
                      ++|+++|.+++|+|++|++| ||++++||||+++.
T Consensus        88 ~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~  122 (123)
T 3i6c_A           88 GQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT  122 (123)
T ss_dssp             TTSCHHHHHHHHHSCTTCBCSCEEETTEEEEEEEC
T ss_pred             CCCCHHHHHHHHhCCCCCccccEEECCEEEEEEEe
Confidence            99999999999999999999 99999999999875

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A

Probab=99.89  E-value=1.2e-23  Score=157.14  Aligned_cols=89  Identities=29%  Similarity=0.590  Sum_probs=83.4

Q ss_pred             CccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCCccc----
Q 022540           87 DREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA----  162 (295)
Q Consensus        87 ~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs----  162 (295)
                      +++|+++||+++.+++  |++++++|++|++|++||++||+|+ +.+||+|||+..++++++|.+++|+|++|++|    
T Consensus         5 ~~~v~~~~Ilv~~~~~--A~~i~~~l~~G~~F~~lA~~~S~d~-a~~GGdlG~~~~~~l~~~f~~a~~~l~~G~vs~~~~   81 (101)
T 3ui4_A            5 SNAVKVRHILCEKHGK--IMEAMEKLKSGMRFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVF   81 (101)
T ss_dssp             GCEEEEEEEEESSHHH--HHHHHHHHHTTCCHHHHHHHHCSSS-GGGTTEEEEEETTSSCHHHHHHHHTSCCCBTTBCCB
T ss_pred             CcEEEEEEEEECCHHH--HHHHHHHHHCCCCHHHHHHHhCcCc-hhcCCceeeEcCCCCCHHHHHHHHhCCCCCCccCcc
Confidence            5789999999998765  9999999999999999999999995 78999999999999999999999999999998    


Q ss_pred             ---cccccceeEEEeeehh
Q 022540          163 ---RCKTKFGWHLLQVLSE  178 (295)
Q Consensus       163 ---pv~~~~G~~ii~v~~~  178 (295)
                         ||++++||||+++.++
T Consensus        82 ~~~pv~t~~G~hIikv~~r  100 (101)
T 3ui4_A           82 TDPPVKTKFGYHIIMVEGR  100 (101)
T ss_dssp             CSSCEEETTEEEEEEEEEE
T ss_pred             cCCcEEECCEEEEEEEEee
Confidence               7999999999998864

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.89  E-value=3.6e-24  Score=162.47  Aligned_cols=98  Identities=24%  Similarity=0.471  Sum_probs=87.7

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHH
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  264 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~  264 (295)
                      ..++++++.+++.+      +.|||||++.||..||||||+|||+..+...    +..++++++|||||++|.||..++.
T Consensus         4 ~~is~~el~~~l~~------~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~----~~~l~~~~~ivvyC~~G~rs~~aa~   73 (108)
T 3gk5_A            4 RSINAADLYENIKA------YTVLDVREPFELIFGSIANSINIPISELREK----WKILERDKKYAVICAHGNRSAAAVE   73 (108)
T ss_dssp             CEECHHHHHHTTTT------CEEEECSCHHHHTTCBCTTCEECCHHHHHHH----GGGSCTTSCEEEECSSSHHHHHHHH
T ss_pred             cEeCHHHHHHHHcC------CEEEECCCHHHHhcCcCCCCEEcCHHHHHHH----HHhCCCCCeEEEEcCCCcHHHHHHH
Confidence            45788888888763      7899999999999999999999999887543    4556899999999999999999999


Q ss_pred             HHHHcCCCceEEccccHhhcccccCCCCC
Q 022540          265 WLQTQGFRRVFNVSGGIHAYATKVDPSIP  293 (295)
Q Consensus       265 ~L~~~G~~~v~~l~GG~~~W~~~~~p~~p  293 (295)
                      .|+..|| +|++|+||+.+|..++.|+.+
T Consensus        74 ~L~~~G~-~v~~l~GG~~~W~~~~~~~~~  101 (108)
T 3gk5_A           74 FLSQLGL-NIVDVEGGIQSWIEEGYPVVL  101 (108)
T ss_dssp             HHHTTTC-CEEEETTHHHHHHHTTCCCBC
T ss_pred             HHHHcCC-CEEEEcCcHHHHHHcCCCCCC
Confidence            9999999 999999999999999998765

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}

Probab=99.89  E-value=1e-23  Score=155.59  Aligned_cols=89  Identities=31%  Similarity=0.598  Sum_probs=83.1

Q ss_pred             CccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCcccccc-CCCCcHHHHHHHHhCCCCccc-cc
Q 022540           87 DREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVR-KGQLVPEFEEVAFTTPLNKVA-RC  164 (295)
Q Consensus        87 ~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~-~~~~~~~~~~~~~~l~~G~vs-pv  164 (295)
                      .++|+++|||++.++  +|++++++|++|++|+++|++||+|+++.+||+|||+. .+.++++|.+++++|++|++| ||
T Consensus         2 ~~~~~~~hIl~~~~~--~A~~i~~~l~~g~~F~~lA~~~S~~~s~~~gG~lg~~~~~~~l~~~f~~a~~~l~~G~is~pv   79 (93)
T 1zk6_A            2 SGKIRASHILVADKK--TAEEVEKKLKKGEKFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPV   79 (93)
T ss_dssp             -CCEEEEEEEESSHH--HHHHHHHHHHHTCCHHHHHHHHCCSGGGGGTTEEEEECTTTSSCTTHHHHHHHSCTTCBCCCE
T ss_pred             CCEEEEEEEEeccHH--HHHHHHHHHHCCCCHHHHHHHhCCCchhhhCCeeeeecccccCCHHHHHHHHcCCCCCccceE
Confidence            468999999999654  49999999999999999999999999999999999999 999999999999999999999 99


Q ss_pred             cccceeEEEeeeh
Q 022540          165 KTKFGWHLLQVLS  177 (295)
Q Consensus       165 ~~~~G~~ii~v~~  177 (295)
                      ++++||||+++.+
T Consensus        80 ~t~~G~hIi~v~~   92 (93)
T 1zk6_A           80 KTQYGYHIIKKTE   92 (93)
T ss_dssp             ECSSCEEEEEEEE
T ss_pred             EECCEEEEEEEec
Confidence            9999999998864

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A

Probab=99.89  E-value=1.4e-23  Score=157.79  Aligned_cols=90  Identities=23%  Similarity=0.393  Sum_probs=84.0

Q ss_pred             cEEEeeEEeccc----------hHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCC
Q 022540           89 EILVQHLLVKED----------DLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPL  158 (295)
Q Consensus        89 ~~~~~hIl~~~~----------~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~  158 (295)
                      +|+++||||+.+          ++++|++++++|++|++|+++|++||+|+++.+||+|||+..++++++|.+++++|++
T Consensus         2 ~~~~~hIli~~~~~~~~~~~~~a~~~a~~i~~~l~~g~~F~~lA~~~S~~~s~~~gG~lg~~~~~~l~~~f~~a~~~l~~   81 (103)
T 2pv1_A            2 ELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKK   81 (103)
T ss_dssp             CEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEECGGGSCHHHHHHTTTCCT
T ss_pred             cEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHhCCCcccccCCccceEchhhcCHHHHHHHHcCCC
Confidence            689999999843          3578999999999999999999999999999999999999999999999999999999


Q ss_pred             Cccc-cccccceeEEEeeehh
Q 022540          159 NKVA-RCKTKFGWHLLQVLSE  178 (295)
Q Consensus       159 G~vs-pv~~~~G~~ii~v~~~  178 (295)
                      |++| ||++++||||+++.++
T Consensus        82 G~is~pv~t~~G~hii~v~~~  102 (103)
T 2pv1_A           82 GDIVGPIRSGVGFHILKVNDL  102 (103)
T ss_dssp             TCEEEEEEETTEEEEEEEEEE
T ss_pred             CCeeccEEECCEEEEEEEEEE
Confidence            9999 9999999999998764

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}

Probab=99.89  E-value=3.2e-23  Score=154.03  Aligned_cols=90  Identities=33%  Similarity=0.555  Sum_probs=84.0

Q ss_pred             CCCccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCC-CCccCCCccccccCCCCcHHHHHHHHhCCCCccc-
Q 022540           85 GGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSIC-PSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-  162 (295)
Q Consensus        85 ~~~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~-~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-  162 (295)
                      +.+++++++||+++.+++  |++++++|++|++|+++|++||+| +++.+||+|||+..++++++|.+++++|++|++| 
T Consensus         5 ~~~~~~~~~hIl~~~~~~--A~~i~~~l~~g~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~l~~G~is~   82 (97)
T 2rqs_A            5 SMADKIKCSHILVKKQGE--ALAVQERLKAGEKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSE   82 (97)
T ss_dssp             CCCCSEEEEEEEESCHHH--HHHHHHHHTTTCCHHHHHHHTCCCCGGGGGTTEEEEECTTSSCHHHHHHHTTCTTSCBCC
T ss_pred             cccceEEEEEEEeCCHHH--HHHHHHHHHCCCCHHHHHHHhCCCCcchhcCceeeeEcCCCCCHHHHHHHHcCCCCCccc
Confidence            567899999999996554  999999999999999999999966 5999999999999999999999999999999999 


Q ss_pred             cccccceeEEEeee
Q 022540          163 RCKTKFGWHLLQVL  176 (295)
Q Consensus       163 pv~~~~G~~ii~v~  176 (295)
                      ||++++||||+++.
T Consensus        83 pv~t~~G~hIi~v~   96 (97)
T 2rqs_A           83 PVKSEFGYHVIKRL   96 (97)
T ss_dssp             CEECSSCEEEEEEC
T ss_pred             cEEECCEEEEEEEe
Confidence            99999999999875

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.89  E-value=1.6e-24  Score=168.83  Aligned_cols=107  Identities=25%  Similarity=0.404  Sum_probs=89.6

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccc-------------cCCCCCcEEEE
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITV-------------KFDPQKDTYVM  252 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~-------------~~~~~~~ivv~  252 (295)
                      .++++++.+++.+.   ++++|||||++.||..||||||+|||+..+.........             ..+++++||||
T Consensus         2 ~is~~el~~~l~~~---~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~   78 (127)
T 3i2v_A            2 RVSVTDYKRLLDSG---AFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEKQGTQEGAAVPIYVI   78 (127)
T ss_dssp             EECHHHHHHHHHHT---CCCEEEECSCHHHHHHCCCTTSEECCHHHHHTTCHHHHHHHHHHHHHHHTTC---CCEEEEEE
T ss_pred             CCCHHHHHHHHhCC---CCeEEEECCCHHHhhheecCCceeCChHHHhhhhhhhHHHHHHHHhhhcccccCCCCCeEEEE
Confidence            36788898888753   357999999999999999999999999887665433211             11234599999


Q ss_pred             eCCChhHHHHHHHHHHc------CCCceEEccccHhhcccccCCCCCCC
Q 022540          253 CHHGMRSLQVAQWLQTQ------GFRRVFNVSGGIHAYATKVDPSIPTY  295 (295)
Q Consensus       253 C~~g~rs~~aa~~L~~~------G~~~v~~l~GG~~~W~~~~~p~~p~~  295 (295)
                      |++|.||..++.+|+..      ||.+|++|+||+.+|..+.+|++|.|
T Consensus        79 C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~~~p~y  127 (127)
T 3i2v_A           79 CKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGTFPQY  127 (127)
T ss_dssp             CSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCTTSCCC
T ss_pred             cCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCCCCCCC
Confidence            99999999999999998      68899999999999999999999998

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=99.89  E-value=2.4e-23  Score=168.98  Aligned_cols=120  Identities=26%  Similarity=0.355  Sum_probs=92.9

Q ss_pred             CCcceeEecccccChHhh---hccccCCCCCCCCCCCccEEEeeEEeccc-------------------hHHHHHHHHHH
Q 022540           54 SNSFHIHIISRSFTSPKA---ASFSSGTEGSSPGGGDREILVQHLLVKED-------------------DLNLLSELQRR  111 (295)
Q Consensus        54 ~~~~~~~~~~~~~~~~e~---~~~~~~~~~~~~~~~~~~~~~~hIl~~~~-------------------~~~~a~~~~~~  111 (295)
                      .|+.+|+.+....+.+|.   .+|....   .....+++|+++||||+..                   +++.+++++++
T Consensus        22 ~g~~yy~n~~t~~t~We~P~~~~~~~~~---~~~~~~~~v~~~HILi~~~~~~~p~~~~~~~~~~~~~~A~~~~~~i~~~   98 (166)
T 3tc5_A           22 SGRVYYFNHITNASQWERPSGNSSSGGK---NGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQK   98 (166)
T ss_dssp             TCCEEEEETTTCCEESSCC----------------CCSCEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCEEecCCCCCcccccc---cccccccceeEeeeEEecccccCccccchhhhhhHHHHHHHHHHHHHHH
Confidence            466777776655554444   1222111   1235678999999999831                   34556667779


Q ss_pred             hcCC-CcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCCccc-cccccceeEEEeee
Q 022540          112 VSQG-EDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  176 (295)
Q Consensus       112 i~~g-~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~  176 (295)
                      |++| ++|++||++||+|+++.+||+|||+..++|+++|++++|+|++|++| ||++++|||||++.
T Consensus        99 l~~g~~~F~~lA~~~Sd~~sa~~GGdLG~~~~~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~v~  165 (166)
T 3tc5_A           99 IKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT  165 (166)
T ss_dssp             HHHTSSCHHHHHHHHCSSGGGGGTTEEEEECTTSSCHHHHHHHHHSCTTCBCCCEEETTEEEEEEEC
T ss_pred             HHcCccCHHHHHHHhCcccHHhcCCccceecccccCHHHHHHHHhCCCCCCcccEEECCEEEEEEEe
Confidence            9999 59999999999988999999999999999999999999999999999 99999999999875

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.89  E-value=2.8e-24  Score=162.51  Aligned_cols=99  Identities=18%  Similarity=0.329  Sum_probs=79.2

Q ss_pred             hhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcC
Q 022540          191 ELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQG  270 (295)
Q Consensus       191 el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G  270 (295)
                      ++.+++.+..  +++.|||||++.||..||||||+|||+..+...   ....++++++|||||.+|.||..++..|+..|
T Consensus         2 el~~~l~~~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~---~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G   76 (106)
T 3hix_A            2 VLKSRLEWGE--PAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR---ASSSLEKSRDIYVYGAGDEQTSQAVNLLRSAG   76 (106)
T ss_dssp             -------------CCEEEECSCHHHHHTCEETTCEECCGGGHHHH---HHHHSCTTSCEEEECSSHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcCC--CCeEEEECCCHHHHhcCcCCCCEeCCHHHHHHH---HHhcCCCCCeEEEEECCCChHHHHHHHHHHcC
Confidence            4566666421  457999999999999999999999999887542   22456889999999999999999999999999


Q ss_pred             CCceEEccccHhhcccccCCCCCC
Q 022540          271 FRRVFNVSGGIHAYATKVDPSIPT  294 (295)
Q Consensus       271 ~~~v~~l~GG~~~W~~~~~p~~p~  294 (295)
                      |++|++|+||+.+|..++.|+.|.
T Consensus        77 ~~~v~~l~GG~~~W~~~g~~~~~~  100 (106)
T 3hix_A           77 FEHVSELKGGLAAWKAIGGPTELE  100 (106)
T ss_dssp             CSCEEECTTHHHHHHHTTCCEEEC
T ss_pred             CcCEEEecCCHHHHHHCCCCCCCC
Confidence            999999999999999999987654

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.88  E-value=5.7e-24  Score=161.35  Aligned_cols=98  Identities=32%  Similarity=0.528  Sum_probs=86.6

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHH
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  264 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~  264 (295)
                      ..++++++.+++.+    .+..|||||++.||..||||||+|||+..+..+    +..++++++|||||.+|.||..++.
T Consensus         5 ~~i~~~~l~~~~~~----~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~----~~~l~~~~~ivvyc~~g~rs~~a~~   76 (108)
T 1gmx_A            5 ECINVADAHQKLQE----KEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAF----MRDNDFDTPVMVMCYHGNSSKGAAQ   76 (108)
T ss_dssp             EEECHHHHHHHHHT----TCCEEEECSCHHHHHHCEETTCEECCHHHHHHH----HHHSCTTSCEEEECSSSSHHHHHHH
T ss_pred             cccCHHHHHHHHhC----CCCEEEEcCCHHHHHhCCCccCEeCCHHHHHHH----HHhcCCCCCEEEEcCCCchHHHHHH
Confidence            45778899888876    357899999999999999999999999887543    3446899999999999999999999


Q ss_pred             HHHHcCCCceEEccccHhhcccccCCC
Q 022540          265 WLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       265 ~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      .|+..||++|++|+||+.+|... .|.
T Consensus        77 ~L~~~G~~~v~~l~GG~~~W~~~-~p~  102 (108)
T 1gmx_A           77 YLLQQGYDVVYSIDGGFEAWQRQ-FPA  102 (108)
T ss_dssp             HHHHHTCSSEEEETTHHHHHHHH-CGG
T ss_pred             HHHHcCCceEEEecCCHHHHHHh-CCc
Confidence            99999999999999999999887 664

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}

Probab=99.88  E-value=1.2e-23  Score=157.49  Aligned_cols=93  Identities=16%  Similarity=0.313  Sum_probs=87.2

Q ss_pred             ccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCCCCccc-ccc
Q 022540           88 REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCK  165 (295)
Q Consensus        88 ~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~  165 (295)
                      ++|+++|||+..+++++|++++++|++|++|++||++||+|+ ++.+||+|||+..++++++|.+++|+ ++|++| ||+
T Consensus         2 ~~~~~~hIl~~~~~~~~A~~i~~~l~~G~~F~~lA~~~S~d~~sa~~GGdlG~~~~~~l~~~f~~a~~~-~~GeiS~pv~   80 (102)
T 2kgj_A            2 QPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLK-EKGQLSGVIK   80 (102)
T ss_dssp             CCCEEEEEEEEESSHHHHHHHHHHHHHTSCHHHHHHHTCTTHHHHTTTSEEEEEETTCCCHHHHTTCCC-STTCEEEEEE
T ss_pred             CEEEEEeeecChhhHHHHHHHHHHHHCCCCHHHHHHHhCCCchhhhcCCccceecccccCHHHHHHHhc-CCCCccccEE
Confidence            578999999976667889999999999999999999999999 99999999999999999999999999 999999 999


Q ss_pred             ccceeEEEeeehhhhh
Q 022540          166 TKFGWHLLQVLSEREA  181 (295)
Q Consensus       166 ~~~G~~ii~v~~~~~~  181 (295)
                      +++||||+++.++++.
T Consensus        81 t~~G~hIikv~~~~~~   96 (102)
T 2kgj_A           81 SSVGFLIVRLDDIQAA   96 (102)
T ss_dssp             ETTEEEEEEEEEEECS
T ss_pred             ECCEEEEEEEeecccc
Confidence            9999999999987654

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A

Probab=99.88  E-value=4.5e-23  Score=191.46  Aligned_cols=160  Identities=18%  Similarity=0.239  Sum_probs=137.0

Q ss_pred             ccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCCC---------------
Q 022540           20 LIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSP---------------   83 (295)
Q Consensus        20 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---------------   83 (295)
                      .....+.+.+.+..+ ..|+.+ +.||.++ ++..+|++||+..+.+.++|+.+.|.++.++++.               
T Consensus       175 ~~~~a~~~~~~l~~g-~~F~~lA~~~S~~~-~~~~gG~lg~~~~~~l~~~~~~~~~~l~~G~vs~pv~~~~g~~iikv~~  252 (408)
T 1m5y_A          175 AESQARAIVDQARNG-ADFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVND  252 (408)
T ss_dssp             HHHHHHHHHHHHHTT-CCHHHHHHHHCCST-TGGGTTEEEEECGGGSCHHHHTGGGTCCTTCEEEEEEETTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCC-CCHHHHHHHcCCCc-ccccCCcccccchhhccHHHHHHHHhCCCCCccCeeecCCeEEEEEEEE
Confidence            334444455556544 699999 9999998 6789999999999999999999999988776542               


Q ss_pred             ------CCCCccEEEeeEEeccc-------hHHHHHHHHHHhcCCC-cHHHHHHHhCCCC-CccCCCccccccCCCCcHH
Q 022540           84 ------GGGDREILVQHLLVKED-------DLNLLSELQRRVSQGE-DLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPE  148 (295)
Q Consensus        84 ------~~~~~~~~~~hIl~~~~-------~~~~a~~~~~~i~~g~-~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~  148 (295)
                            ....++++++|||+++.       +++++++++++|++|+ +|+++|++||.|+ ++.+||++||+..+.++|+
T Consensus       253 ~~~~~~~~~~~~~~~~~Il~~~~~~~~~~~a~~~a~~~~~~l~~g~~~f~~~A~~~s~~~~s~~~gg~lg~~~~~~~~~~  332 (408)
T 1m5y_A          253 LRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPA  332 (408)
T ss_dssp             ECCCCCCCCCEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHH
T ss_pred             ecCCCCcccccchhhheeeecCCCCcCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCcchhhcCCcCcccCcccchHH
Confidence                  12346899999999853       3567899999999998 9999999999998 8999999999999999999


Q ss_pred             HHHHHHhCCCCccc-cccccceeEEEeeehhhhh
Q 022540          149 FEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA  181 (295)
Q Consensus       149 ~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~~~~~  181 (295)
                      |.+++|+|++|++| ||.+++|||++++.+.++.
T Consensus       333 ~~~a~f~l~~G~~s~~v~~~~g~~ii~v~~~~~~  366 (408)
T 1m5y_A          333 FRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNV  366 (408)
T ss_dssp             HHHHHHTCCTTCBCCCEECSSCEEEEEEEEEEEC
T ss_pred             HHHHHHcCCCCCccCcEeeCCeEEEEEEeeecCC
Confidence            99999999999999 9999999999999987754

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.88  E-value=4.6e-23  Score=152.38  Aligned_cols=92  Identities=18%  Similarity=0.403  Sum_probs=76.6

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHH
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQW  265 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~  265 (295)
                      .++++++.+++.+     +..+||||++.||..||||||+|+|+..+...    +..+++ ++||+||.+|.||..++..
T Consensus         3 ~is~~~l~~~~~~-----~~~liDvR~~~e~~~ghi~gAi~ip~~~l~~~----~~~l~~-~~ivvyC~~g~rs~~a~~~   72 (94)
T 1wv9_A            3 KVRPEELPALLEE-----GVLVVDVRPADRRSTPLPFAAEWVPLEKIQKG----EHGLPR-RPLLLVCEKGLLSQVAALY   72 (94)
T ss_dssp             EECGGGHHHHHHT-----TCEEEECCCC--CCSCCSSCCEECCHHHHTTT----CCCCCS-SCEEEECSSSHHHHHHHHH
T ss_pred             cCCHHHHHHHHHC-----CCEEEECCCHHHHhcccCCCCEECCHHHHHHH----HHhCCC-CCEEEEcCCCChHHHHHHH
Confidence            4678888888764     46899999999999999999999999988654    344577 9999999999999999999


Q ss_pred             HHHcCCCceEEccccHhhccccc
Q 022540          266 LQTQGFRRVFNVSGGIHAYATKV  288 (295)
Q Consensus       266 L~~~G~~~v~~l~GG~~~W~~~~  288 (295)
                      |+..||+ |++|+||+.+|..+|
T Consensus        73 L~~~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           73 LEAEGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             HHHHTCC-EEEETTGGGCC----
T ss_pred             HHHcCCc-EEEEcccHHHHHhCc
Confidence            9999998 999999999998654

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}

Probab=99.87  E-value=1.7e-22  Score=153.84  Aligned_cols=92  Identities=28%  Similarity=0.451  Sum_probs=85.1

Q ss_pred             CCCccEEEeeEEeccc-------------hHHHHHHHHHHhcCC-CcHHHHHHHhCCCC-CccCCCccccccCCCCcHHH
Q 022540           85 GGDREILVQHLLVKED-------------DLNLLSELQRRVSQG-EDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEF  149 (295)
Q Consensus        85 ~~~~~~~~~hIl~~~~-------------~~~~a~~~~~~i~~g-~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~  149 (295)
                      ..+++|+++||||+.+             ++++|++++++|++| ++|+++|++||+|+ ++.+||+|||+..++++++|
T Consensus         3 ~~~~~~~~~hIli~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~g~~~F~~lA~~~S~d~~s~~~gG~lG~~~~~~l~~~f   82 (111)
T 2jzv_A            3 LGSDSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDF   82 (111)
T ss_dssp             CCCSEEEEEEEEEEBCSCSSCSSSBCHHHHHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEEETTSSCHHH
T ss_pred             CCCcEEEEEEEEEECCCCCChhhhhhHHHHHHHHHHHHHHHHcCcccHHHHHHHHCCCcchhhhCCccceecCCcccHHH
Confidence            3568999999999821             567899999999999 89999999999999 99999999999999999999


Q ss_pred             HHHHHhCCCCccc-cccccceeEEEeee
Q 022540          150 EEVAFTTPLNKVA-RCKTKFGWHLLQVL  176 (295)
Q Consensus       150 ~~~~~~l~~G~vs-pv~~~~G~~ii~v~  176 (295)
                      .+++|+|++|++| ||++++||||+++.
T Consensus        83 ~~a~~~l~~G~is~pv~t~~G~hIi~v~  110 (111)
T 2jzv_A           83 EKALFKLKDGEVSEVVKSSFGYHIIKAD  110 (111)
T ss_dssp             HHHHHTCCTTCBCCCEEETTEEEEEEEC
T ss_pred             HHHHHhCCCCCcCccEEECCEEEEEEEe
Confidence            9999999999999 99999999999875

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.3e-22  Score=160.81  Aligned_cols=109  Identities=17%  Similarity=0.317  Sum_probs=90.8

Q ss_pred             hcccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCc----ccc-----ccCCCCCcEEEEe
Q 022540          183 LLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP----DIT-----VKFDPQKDTYVMC  253 (295)
Q Consensus       183 ~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~----~~~-----~~~~~~~~ivv~C  253 (295)
                      ....++++++.+++.+..  .+..|||||++.||..||||||+|||+..+.....    .+.     ..++++++|||||
T Consensus        21 ~~~~is~~el~~~l~~~~--~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC   98 (139)
T 3d1p_A           21 NIQSYSFEDMKRIVGKHD--PNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYC   98 (139)
T ss_dssp             CCEECCHHHHHHHHHHTC--TTEEEEECSCHHHHHHCCCTTCEECCTTTCTTGGGSCHHHHHHHHSSCCCCTTSEEEEEC
T ss_pred             CcceecHHHHHHHHhCCC--CCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhhccCCHHHHHHHHhccCCCCCCeEEEEC
Confidence            345688899999886311  46799999999999999999999999988754321    000     1357889999999


Q ss_pred             CCChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCCC
Q 022540          254 HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP  293 (295)
Q Consensus       254 ~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~p  293 (295)
                      ++|.||..++..|+..||++|++|+||+.+|...++|++.
T Consensus        99 ~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A           99 ASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             SSSHHHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             CCCchHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            9999999999999999999999999999999999998764

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.87  E-value=3.6e-23  Score=161.95  Aligned_cols=106  Identities=24%  Similarity=0.370  Sum_probs=87.5

Q ss_pred             hhcccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCC--------CCccccccCCCCCcEEEEe
Q 022540          182 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGS--------WGPDITVKFDPQKDTYVMC  253 (295)
Q Consensus       182 ~~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~--------~~~~~~~~~~~~~~ivv~C  253 (295)
                      .....++++++.+++.     .+..|||||++.||..||||||+|||+..+..        ........++++++|||||
T Consensus        15 ~~~~~is~~e~~~~l~-----~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC   89 (129)
T 1tq1_A           15 RVPSSVSVTVAHDLLL-----AGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGC   89 (129)
T ss_dssp             CCCEEEEHHHHHHHHH-----HTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEE
T ss_pred             CCCcccCHHHHHHHhc-----CCCEEEECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEEC
Confidence            3445688888888876     25689999999999999999999999943321        1112233467899999999


Q ss_pred             CCChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          254 HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       254 ~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ++|.||..++..|+..||++|++|+||+.+|...+.|..
T Consensus        90 ~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  128 (129)
T 1tq1_A           90 QSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  128 (129)
T ss_dssp             SSCSHHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             CCCcHHHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCC
Confidence            999999999999999999999999999999999888864

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.87  E-value=2e-22  Score=159.57  Aligned_cols=107  Identities=21%  Similarity=0.369  Sum_probs=89.1

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhh-cCCCCccccCccccCCCC----ccccccCCCCCcEEEEeCCChh
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL-SSLPGFQVLPLRQFGSWG----PDITVKFDPQKDTYVMCHHGMR  258 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~-ghIpgAinip~~~l~~~~----~~~~~~~~~~~~ivv~C~~g~r  258 (295)
                      ...++++++.+++.+..  .+..|||||++.||.. ||||||+|||+..+....    ......++++++|||||++|.|
T Consensus        21 ~~~is~~~l~~~l~~~~--~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~ivvyC~~G~r   98 (139)
T 2hhg_A           21 IETLTTADAIALHKSGA--SDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDPQSPYAKPIFQEDKKFVFYCAGGLR   98 (139)
T ss_dssp             SEEECHHHHHHHHHTTC--TTEEEEECSCHHHHHHHCCCTTCEECCGGGHHHHHCTTSTTCCGGGGSSSEEEEECSSSHH
T ss_pred             cCccCHHHHHHHHhccC--CCeEEEECCCHHHHHhCCCCCCeEECChHHHHHhcCccchhhhccCCCCCeEEEECCCChH
Confidence            45588889999887310  4678999999999999 999999999998763211    1112345789999999999999


Q ss_pred             HHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          259 SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       259 s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      |..++..|+..||++|++|+||+.+|...+.|..
T Consensus        99 s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  132 (139)
T 2hhg_A           99 SALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIE  132 (139)
T ss_dssp             HHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCee
Confidence            9999999999999999999999999999998875

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.87  E-value=7.4e-23  Score=161.85  Aligned_cols=103  Identities=23%  Similarity=0.487  Sum_probs=89.4

Q ss_pred             cccccchhhhhhcc-CCCccccceeecCcchhHHhh-cC--CCCccccCccccCCCCccccccCCCCCcEEEEeCCChhH
Q 022540          184 LQDIQPDELHKKMQ-DPNFHKEAQLIDVREPEEVAL-SS--LPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRS  259 (295)
Q Consensus       184 ~~~is~~el~~~L~-~~~~~~~~~iiDvR~~~e~~~-gh--IpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs  259 (295)
                      ...++++++.+++. +    ++.+|||||++.||.. ||  ||||+|||+..+...  ..+..++++++|||||++|.||
T Consensus        22 ~~~is~~el~~~l~~~----~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~~~--~~~~~l~~~~~ivvyC~~G~rS   95 (137)
T 1qxn_A           22 MVMLSPKDAYKLLQEN----PDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPL--LAKSGLDPEKPVVVFCKTAARA   95 (137)
T ss_dssp             SEEECHHHHHHHHHHC----TTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHH--HHHHCCCTTSCEEEECCSSSCH
T ss_pred             CcccCHHHHHHHHhcC----CCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhhhH--HhhccCCCCCeEEEEcCCCcHH
Confidence            44588889999887 4    4679999999999999 99  999999999877431  1234568999999999999999


Q ss_pred             HHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          260 LQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       260 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ..++..|+..||++|++|+||+.+|...++|..
T Consensus        96 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  128 (137)
T 1qxn_A           96 ALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSL  128 (137)
T ss_dssp             HHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEE
T ss_pred             HHHHHHHHHcCCcceEEEcCcHHHHHHCCCCcc
Confidence            999999999999999999999999999998764

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.87  E-value=2.9e-23  Score=161.44  Aligned_cols=104  Identities=17%  Similarity=0.257  Sum_probs=89.8

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHH-hhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChh--HH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEV-ALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMR--SL  260 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~-~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~r--s~  260 (295)
                      ...++++++.+++.+..  ++++|||||++.|| ..||||||+|||+..|...    +..++++++|||||++|.|  |.
T Consensus        14 ~~~is~~el~~~l~~~~--~~~~liDvR~~~e~~~~ghIpgA~nip~~~l~~~----~~~l~~~~~ivvyC~~g~r~~s~   87 (124)
T 3flh_A           14 SLYIDHHTVLADMQNAT--GKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATR----IGELDPAKTYVVYDWTGGTTLGK   87 (124)
T ss_dssp             TTEECHHHHHHHHHHTC--CCEEEEECCCSCHHHHCCEETTCEECCHHHHHHH----GGGSCTTSEEEEECSSSSCSHHH
T ss_pred             cceecHHHHHHHHHcCC--CCEEEEECCCHHHHHhcCcCCCCEECCHHHHHHH----HhcCCCCCeEEEEeCCCCchHHH
Confidence            34588899999887631  24799999999998 9999999999999887543    4457889999999999999  89


Q ss_pred             HHHHHHHHcCCCceEEccccHhhcccccCCCCCC
Q 022540          261 QVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPT  294 (295)
Q Consensus       261 ~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~p~  294 (295)
                      .++..|+..||+ |++|+||+.+|...+.|..|.
T Consensus        88 ~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~~  120 (124)
T 3flh_A           88 TALLVLLSAGFE-AYELAGALEGWKGMQLPLEHH  120 (124)
T ss_dssp             HHHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC-
T ss_pred             HHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCcc
Confidence            999999999996 999999999999999998774

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.86  E-value=8.2e-23  Score=162.35  Aligned_cols=100  Identities=18%  Similarity=0.342  Sum_probs=86.8

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHH
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL  266 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L  266 (295)
                      ++++++.+++.+..  ++++|||||++.||..||||||+|||+..|..+   ....++++++|||||.+|.||..++..|
T Consensus         2 Is~~el~~~l~~~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~---~~~~l~~~~~ivvyC~~g~rs~~aa~~L   76 (141)
T 3ilm_A            2 SDAHVLKSRLEWGE--PAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR---ASSSLEKSRDIYVYGAGDEQTSQAVNLL   76 (141)
T ss_dssp             CCHHHHHHHHHHSC--SCEEEEECSCHHHHHHCEETTCEECCGGGHHHH---HHTTSCTTSEEEEECSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCC--CCEEEEECCCHHHHhCCCCCCCEEcCHHHHHHH---HHhcCCCCCeEEEEECCChHHHHHHHHH
Confidence            56788888887531  357999999999999999999999999887543   1234688999999999999999999999


Q ss_pred             HHcCCCceEEccccHhhcccccCCC
Q 022540          267 QTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       267 ~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      +..||++|++|+||+.+|...+.|.
T Consensus        77 ~~~G~~~v~~l~GG~~~W~~~g~p~  101 (141)
T 3ilm_A           77 RSAGFEHVSELKGGLAAWKAIGGPT  101 (141)
T ss_dssp             HHTTCCSEEECTTHHHHHHHTTCCE
T ss_pred             HHcCCCCEEEecCHHHHHHHCCCCc
Confidence            9999999999999999999988875

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1

Probab=99.86  E-value=7.6e-23  Score=161.58  Aligned_cols=93  Identities=23%  Similarity=0.458  Sum_probs=84.3

Q ss_pred             CCCCccEEEeeEEeccc-----------------------hHHHHHHHHHHhcCCC-cHHHHHHHhCCCCCccCCCcccc
Q 022540           84 GGGDREILVQHLLVKED-----------------------DLNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGW  139 (295)
Q Consensus        84 ~~~~~~~~~~hIl~~~~-----------------------~~~~a~~~~~~i~~g~-~F~~~a~~~S~~~~~~~gG~lg~  139 (295)
                      +..+++|+++||||+.+                       ++++|++++++|++|+ +|++||++||+|+++.+||+|||
T Consensus        21 f~~~~~v~~~HILi~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~a~~i~~~l~~G~~~F~~lA~~~S~~~sa~~GGdLG~  100 (139)
T 1j6y_A           21 MASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGS  100 (139)
T ss_dssp             CSSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEE
T ss_pred             cCCCCeEEEEEEEEecCccccccccccccccccchHHHHHHHHHHHHHHHHHHcCcccHHHHHHHhccCchhhcCCeeee
Confidence            36788999999999842                       2456789999999998 79999999999888899999999


Q ss_pred             ccCCCCcHHHHHHHHhCCCCccc-cccccceeEEEeee
Q 022540          140 VRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  176 (295)
Q Consensus       140 ~~~~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~  176 (295)
                      +..++|+++|.+++|+|++|++| ||++++||||+++.
T Consensus       101 ~~~~~l~~~f~~a~~~l~~GeiS~pv~t~~G~hIikv~  138 (139)
T 1j6y_A          101 FGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT  138 (139)
T ss_dssp             CSSSSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSC
T ss_pred             ecccccCHHHHHHHHcCCCCCccccEEECCEEEEEEEe
Confidence            99999999999999999999999 99999999999764

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.86  E-value=6.7e-22  Score=157.66  Aligned_cols=102  Identities=18%  Similarity=0.244  Sum_probs=88.3

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCC--hhHHHH
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHG--MRSLQV  262 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g--~rs~~a  262 (295)
                      ..++++++.+++.+..  ++++|||||++.||..||||||+|||+..+...   .+..++++++|||||++|  .||..+
T Consensus        16 ~~is~~el~~~l~~~~--~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~---~~~~l~~~~~ivvyC~~g~~~rs~~a   90 (144)
T 3nhv_A           16 YETDIADLSIDIKKGY--EGIIVVDVRDAEAYKECHIPTAISIPGNKINED---TTKRLSKEKVIITYCWGPACNGATKA   90 (144)
T ss_dssp             TEEEHHHHHHHHHTTC--CSEEEEECSCHHHHHHCBCTTCEECCGGGCSTT---TTTTCCTTSEEEEECSCTTCCHHHHH
T ss_pred             cccCHHHHHHHHHcCC--CCEEEEECcCHHHHhcCCCCCCEECCHHHHhHH---HHhhCCCCCeEEEEECCCCccHHHHH
Confidence            3478899999887631  367999999999999999999999999988631   244568999999999998  699999


Q ss_pred             HHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          263 AQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       263 a~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      +..|+..|| +|++|+||+.+|...+.|..
T Consensus        91 a~~L~~~G~-~v~~l~GG~~~W~~~g~pv~  119 (144)
T 3nhv_A           91 AAKFAQLGF-RVKELIGGIEYWRKENGEVE  119 (144)
T ss_dssp             HHHHHHTTC-EEEEEESHHHHHHHTTCCCB
T ss_pred             HHHHHHCCC-eEEEeCCcHHHHHHCCCCcc
Confidence            999999999 69999999999999998865

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.84  E-value=5.9e-22  Score=159.38  Aligned_cols=105  Identities=14%  Similarity=0.199  Sum_probs=89.2

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeC-CChhHHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCH-HGMRSLQV  262 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~-~g~rs~~a  262 (295)
                      ...++++++.+++.+    ++.+|||||++.||..||||||+|||+..+......+...++++++|||||+ +|.||..+
T Consensus        27 ~~~Is~~el~~~l~~----~~~~lIDvR~~~ey~~ghIpgAinip~~~l~~~~~~l~~~~~~~~~iVvyC~~~G~rs~~a  102 (152)
T 1t3k_A           27 ISYITSTQLLPLHRR----PNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQVRGPTC  102 (152)
T ss_dssp             SEEECTTTTTTCCCC----TTEEEEEESCSHHHHSSCCCSSEEECCSSSSTTHHHHHHTCCSCCEEEESSSCCSSSHHHH
T ss_pred             CceECHHHHHHHhcC----CCEEEEECCChhhccCccCCCCEECCHHHHHHHHHHHHHhcCCCCEEEEEcCCCCcchHHH
Confidence            445788888888765    4679999999999999999999999999887654444444578999999999 99999999


Q ss_pred             HHHHHH--------cCCCceEEccccHhhcccccCCCC
Q 022540          263 AQWLQT--------QGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       263 a~~L~~--------~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      +..|.+        .||++|++|+||+.+|...+.|..
T Consensus       103 a~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  140 (152)
T 1t3k_A          103 ARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVC  140 (152)
T ss_dssp             HHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCccc
Confidence            988753        899999999999999999888765

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.84  E-value=1e-21  Score=149.42  Aligned_cols=87  Identities=17%  Similarity=0.314  Sum_probs=76.5

Q ss_pred             ccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540          203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  282 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~  282 (295)
                      ++.+|||||++.||..||||||+|||+..+......  ..++++++|||||++|.||..++..|+..||++ ++|+||+.
T Consensus        15 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~--~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~-~~l~GG~~   91 (110)
T 2k0z_A           15 NDFIVVDVRELDEYEELHLPNATLISVNDQEKLADF--LSQHKDKKVLLHCRAGRRALDAAKSMHELGYTP-YYLEGNVY   91 (110)
T ss_dssp             GGSEEEEEECHHHHHHSBCTTEEEEETTCHHHHHHH--HHSCSSSCEEEECSSSHHHHHHHHHHHHTTCCC-EEEESCGG
T ss_pred             CCeEEEECCCHHHHhcCcCCCCEEcCHHHHHHHHHh--cccCCCCEEEEEeCCCchHHHHHHHHHHCCCCE-EEecCCHH
Confidence            467999999999999999999999999877543111  126789999999999999999999999999999 99999999


Q ss_pred             hcccccCCCC
Q 022540          283 AYATKVDPSI  292 (295)
Q Consensus       283 ~W~~~~~p~~  292 (295)
                      +|...+.|..
T Consensus        92 ~W~~~g~p~~  101 (110)
T 2k0z_A           92 DFEKYGFRMV  101 (110)
T ss_dssp             GTTTTTCCCB
T ss_pred             HHHHCCCcEe
Confidence            9999988864

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=99.84  E-value=5.1e-21  Score=157.48  Aligned_cols=92  Identities=39%  Similarity=0.634  Sum_probs=83.0

Q ss_pred             CCCccEEEeeEEeccc--------------------hHHHHHHHHHHhcCCC-cHHHHHHHhCCCCCccCCCccccccCC
Q 022540           85 GGDREILVQHLLVKED--------------------DLNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWVRKG  143 (295)
Q Consensus        85 ~~~~~~~~~hIl~~~~--------------------~~~~a~~~~~~i~~g~-~F~~~a~~~S~~~~~~~gG~lg~~~~~  143 (295)
                      ..+++++++||||+..                    +++.+++++++|++|+ +|++||++||+|+++.+||+|||+..+
T Consensus        63 ~~~~~~~~~hIlv~~~~~~~p~~~~~~~~~~~~~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~~sa~~GGdLG~~~~~  142 (177)
T 1yw5_A           63 NEDGQVRVSHLLIKNNQSRKPKSWKSPDGISRTRDESIQILKKHLERILSGEVKLSELANTESDCSSHDRGGDLGFFSKG  142 (177)
T ss_dssp             CTTSCEEEEEEEECCTTSSSCCBTTBTTCCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSGGGGGTTEEEEECTT
T ss_pred             CCcceEEEEEEEEecCCccCcccccccccchhHHHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCcchhcCCccceeccc
Confidence            4678999999999842                    2345677889999998 899999999999999999999999999


Q ss_pred             CCcHHHHHHHHhCCCCccc-cccccceeEEEeee
Q 022540          144 QLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  176 (295)
Q Consensus       144 ~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~  176 (295)
                      +|+++|.+++|+|++|++| ||++++||||+++.
T Consensus       143 ~l~~~f~~a~f~L~~GeiS~pv~t~~G~hIikv~  176 (177)
T 1yw5_A          143 QMQPPFEEAAFNLHVGEVSNIIETNSGVHILQRT  176 (177)
T ss_dssp             SSCHHHHHHHHTSCTTCBCCCEEETTEEEEEEEC
T ss_pred             ccCHHHHHHHHcCCCCCcCCeEEECCEEEEEEEe
Confidence            9999999999999999999 99999999999875

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.83  E-value=1.4e-21  Score=141.56  Aligned_cols=79  Identities=28%  Similarity=0.397  Sum_probs=68.9

Q ss_pred             ceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhc
Q 022540          205 AQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY  284 (295)
Q Consensus       205 ~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W  284 (295)
                      +.+||||++.||..||||||+|||+..+......+  ..+++++|||||++|.||..++..|++.||++|+++ ||+.+|
T Consensus         2 ~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~~~~l--~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~~w   78 (85)
T 2jtq_A            2 EHWIDVRVPEQYQQEHVQGAINIPLKEVKERIATA--VPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLKDI   78 (85)
T ss_dssp             EEEEECSCHHHHTTEEETTCEECCHHHHHHHHHHH--CCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETTTC
T ss_pred             CEEEECCCHHHHHhCCCCCCEEcCHHHHHHHHHHh--CCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHHHH
Confidence            57999999999999999999999998875432211  127889999999999999999999999999999999 999999


Q ss_pred             cc
Q 022540          285 AT  286 (295)
Q Consensus       285 ~~  286 (295)
                      ..
T Consensus        79 ~~   80 (85)
T 2jtq_A           79 AM   80 (85)
T ss_dssp             CS
T ss_pred             hc
Confidence            64

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.81  E-value=4e-21  Score=150.77  Aligned_cols=97  Identities=22%  Similarity=0.283  Sum_probs=76.7

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCC-----------------------------
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-----------------------------  235 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~-----------------------------  235 (295)
                      ..++++++.+   .    +++.|||||++.||..||||||+|||+..+...                             
T Consensus         5 ~~i~~~el~~---~----~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (134)
T 3g5j_A            5 SVIKIEKALK---L----DKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKD   77 (134)
T ss_dssp             CEECHHHHTT---C----TTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGHHH
T ss_pred             cccCHHHHHh---c----CCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccccccHHH
Confidence            3466666655   2    578999999999999999999999999643210                             


Q ss_pred             CccccccCCCC-CcEEEEe-CCChhHHHHHHHHHHcCCCceEEccccHhhcccccC
Q 022540          236 GPDITVKFDPQ-KDTYVMC-HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD  289 (295)
Q Consensus       236 ~~~~~~~~~~~-~~ivv~C-~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~  289 (295)
                      ....+..++++ ++||||| ++|.||..++..|+..|| +|++|+||+.+|.+...
T Consensus        78 ~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~~~  132 (134)
T 3g5j_A           78 IYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAYRNFVL  132 (134)
T ss_dssp             HHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHHHHHHHT
T ss_pred             HHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHHHHHHhh
Confidence            00112234677 9999999 589999999999999999 99999999999986543

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.81  E-value=1.2e-20  Score=164.14  Aligned_cols=105  Identities=21%  Similarity=0.368  Sum_probs=88.6

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccc--cCCCCCcEEEEeCCChhHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITV--KFDPQKDTYVMCHHGMRSLQ  261 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~--~~~~~~~ivv~C~~g~rs~~  261 (295)
                      ...++++++.+++.+    ++.+|||||++.||..||||||+|+|+..+.+....+..  ..+++++||+||++|.||..
T Consensus       121 ~~~Is~~el~~ll~~----~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~~~~~~l~~~l~~~kdk~IVvyC~~G~RS~~  196 (265)
T 4f67_A          121 GTYLSPEEWHQFIQD----PNVILLDTRNDYEYELGTFKNAINPDIENFREFPDYVQRNLIDKKDKKIAMFCTGGIRCEK  196 (265)
T ss_dssp             TCEECHHHHHHHTTC----TTSEEEECSCHHHHHHEEETTCBCCCCSSGGGHHHHHHHHTGGGTTSCEEEECSSSHHHHH
T ss_pred             CceECHHHHHHHhcC----CCeEEEEeCCchHhhcCcCCCCEeCCHHHHHhhHHHHHHhhhhCCCCeEEEEeCCChHHHH
Confidence            445888999999876    578999999999999999999999999887543222211  12688999999999999999


Q ss_pred             HHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          262 VAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       262 aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ++..|+..||++|++|+||+.+|.++..+..
T Consensus       197 Aa~~L~~~Gf~nV~~L~GGi~aW~~~~~~~~  227 (265)
T 4f67_A          197 TTAYMKELGFEHVYQLHDGILNYLESIPESE  227 (265)
T ss_dssp             HHHHHHHHTCSSEEEETTHHHHHHHHSCTTT
T ss_pred             HHHHHHHcCCCCEEEecCHHHHHHHhcCccc
Confidence            9999999999999999999999998876643

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.80  E-value=1.1e-20  Score=151.23  Aligned_cols=104  Identities=19%  Similarity=0.252  Sum_probs=79.9

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhh-cCC------CCccccCccccCC-----CCccccc-----cCCCCCc
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL-SSL------PGFQVLPLRQFGS-----WGPDITV-----KFDPQKD  248 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~-ghI------pgAinip~~~l~~-----~~~~~~~-----~~~~~~~  248 (295)
                      .++++++.+++.+.   ++.+|||||++.||.. |||      |||+|||+..+..     +...+..     .++++++
T Consensus         6 ~is~~el~~~l~~~---~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~   82 (148)
T 2fsx_A            6 DITPLQAWEMLSDN---PRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDRIPADADQHERP   82 (148)
T ss_dssp             EECHHHHHHHHHHC---TTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBCTTSCBCTTHHHHHHHHCC-------CC
T ss_pred             cCCHHHHHHHHhcC---CCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeeccccccCHHHHHHHHHHHhhccCCCCCE
Confidence            47788898888742   3678999999999997 999      9999999987211     0011111     1378899


Q ss_pred             EEEEeCCChhHHHHHHHHHHcCCCceEEccccH------------hhcccccCCCC
Q 022540          249 TYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGI------------HAYATKVDPSI  292 (295)
Q Consensus       249 ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~------------~~W~~~~~p~~  292 (295)
                      |||||++|.||..++..|+..||++|++|+||+            .+|...++|..
T Consensus        83 ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp~~  138 (148)
T 2fsx_A           83 VIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWR  138 (148)
T ss_dssp             EEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCSEE
T ss_pred             EEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhhhhhccccccccHHHcCCCCC
Confidence            999999999999999999999999999999999            56777776653

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.80  E-value=1.8e-20  Score=147.47  Aligned_cols=106  Identities=17%  Similarity=0.230  Sum_probs=83.7

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhh-cCC------CCccccCccccCC--CCccccccC--CCCCcEEEE
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL-SSL------PGFQVLPLRQFGS--WGPDITVKF--DPQKDTYVM  252 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~-ghI------pgAinip~~~l~~--~~~~~~~~~--~~~~~ivv~  252 (295)
                      ...++++++.+++.+.   ++.+|||||++.||.. +|+      |||+|||+..+..  +...+...+  +++++||||
T Consensus         4 ~~~is~~e~~~~l~~~---~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~~~~~~~l~~~~~~~~~~~ivv~   80 (134)
T 1vee_A            4 GSSGSAKNAYTKLGTD---DNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKKLSLKFKDPENTTLYIL   80 (134)
T ss_dssp             SCBCCHHHHHHHHHHC---TTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGGGHHHHHHHHHTTCSCGGGCEEEEE
T ss_pred             CCccCHHHHHHHHHhC---CCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccccChhHHHHHHHHhCCCCCCEEEEE
Confidence            3457888998888632   4678999999999986 333      7999999976421  101111112  678999999


Q ss_pred             eCCChhHHHHHHHHHHcCCCceEEccccH---hhcccccCCCC
Q 022540          253 CHHGMRSLQVAQWLQTQGFRRVFNVSGGI---HAYATKVDPSI  292 (295)
Q Consensus       253 C~~g~rs~~aa~~L~~~G~~~v~~l~GG~---~~W~~~~~p~~  292 (295)
                      |++|.||..++..|+.+||++|++|.||+   .+|...++|..
T Consensus        81 C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~  123 (134)
T 1vee_A           81 DKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWI  123 (134)
T ss_dssp             CSSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEE
T ss_pred             eCCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCC
Confidence            99999999999999999999999999999   78999998865

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.78  E-value=1e-19  Score=162.35  Aligned_cols=104  Identities=18%  Similarity=0.194  Sum_probs=87.9

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHH-----------hhcCCCCccccCccccCCCCccc---------c--ccC
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEV-----------ALSSLPGFQVLPLRQFGSWGPDI---------T--VKF  243 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~-----------~~ghIpgAinip~~~l~~~~~~~---------~--~~~  243 (295)
                      .++.+++.+.+.+    ....|||||++.||           ..||||||+|||+..+......+         +  ..+
T Consensus       176 ~i~~~e~~~~~~~----~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~l~~~~~~~~~  251 (302)
T 3olh_A          176 IKTYEDIKENLES----RRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRHLFQEKKV  251 (302)
T ss_dssp             EECHHHHHHHHHH----CCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCGGGGBCSSSCBCCHHHHHHHHHHTTC
T ss_pred             eecHHHHHHhhcC----CCcEEEecCCHHHccccccCCCcCCcCccCCCceecCHHHhcCCCCccCCHHHHHHHHHhcCC
Confidence            4677888888765    46789999999999           78999999999998875532211         0  136


Q ss_pred             CCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCCC
Q 022540          244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP  293 (295)
Q Consensus       244 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~p  293 (295)
                      +++++||+||++|.||..++..|+.+||++|++|+|||.+|...++|.+.
T Consensus       252 ~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~~~P~~~  301 (302)
T 3olh_A          252 DLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPEDV  301 (302)
T ss_dssp             CTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHHHHHHHCCCC-
T ss_pred             CCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHHHhhccCCCCC
Confidence            78999999999999999999999999999999999999999999999874

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.77  E-value=9.2e-20  Score=147.87  Aligned_cols=107  Identities=17%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             cccccchhhhhhccCCCc--cccceeecCcchhHHhhcCCCCccccCccccCCC-CccccccC-CCCCcE--EEEeC-CC
Q 022540          184 LQDIQPDELHKKMQDPNF--HKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-GPDITVKF-DPQKDT--YVMCH-HG  256 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~--~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~-~~~~~~~~-~~~~~i--vv~C~-~g  256 (295)
                      ...++++++.+++.+...  .++..|||||++.||..||||||+|||+..+... ... ...+ +++++|  ||||. +|
T Consensus        22 ~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~~~~~~~~~-~~~~~~~~~~ivvv~yC~~sg  100 (161)
T 1c25_A           22 LKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLK-KPIVPTDGKRVIVVFHCEFSS  100 (161)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHTTT-SCCCCCTTSEEEEEEECSSSS
T ss_pred             cceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChhHHHHHHHhh-hhhccCCCCCeEEEEEcCCCC
Confidence            456888999998875200  0257899999999999999999999999865321 111 1112 567886  67899 99


Q ss_pred             hhHHHHHHHHHH----------cCCCceEEccccHhhcccccCCC
Q 022540          257 MRSLQVAQWLQT----------QGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       257 ~rs~~aa~~L~~----------~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      .||..++..|++          .||++|++|+||+.+|...+.|.
T Consensus       101 ~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~  145 (161)
T 1c25_A          101 ERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSY  145 (161)
T ss_dssp             SHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGG
T ss_pred             cchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccc
Confidence            999999999986          49999999999999999887654

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.77  E-value=5.5e-19  Score=155.11  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=86.8

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHh--------hcCCCCccccCccccCCCCc---------cccc--cCCCC
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVA--------LSSLPGFQVLPLRQFGSWGP---------DITV--KFDPQ  246 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~--------~ghIpgAinip~~~l~~~~~---------~~~~--~~~~~  246 (295)
                      .++.+++.+.+.+    .+..|||||++.||.        .||||||+|||+..+.....         ..+.  .++++
T Consensus       148 ~i~~~~l~~~l~~----~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  223 (271)
T 1e0c_A          148 TASRDYLLGRLGA----ADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPD  223 (271)
T ss_dssp             BCCHHHHHHHTTC----TTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTT
T ss_pred             cccHHHHHHHhcC----CCcEEEEcCChhhcCCccCCCCcCCcCCCceeccHHHhCCCCCCCCCHHHHHHHHHHcCCCCC
Confidence            4778889888876    467899999999999        89999999999987743210         0122  46789


Q ss_pred             CcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccc-cCCCC
Q 022540          247 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK-VDPSI  292 (295)
Q Consensus       247 ~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~-~~p~~  292 (295)
                      ++|||||++|.||..++..|+.+||++|++|+||+.+|... +.|..
T Consensus       224 ~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~~pv~  270 (271)
T 1e0c_A          224 KEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  270 (271)
T ss_dssp             SEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             CCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCCc
Confidence            99999999999999999999999999999999999999987 76653

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}

Probab=99.76  E-value=1.4e-19  Score=157.38  Aligned_cols=112  Identities=26%  Similarity=0.486  Sum_probs=93.8

Q ss_pred             ccChHhh-hccccCCCCCCCCCCCccEEEeeEEeccchHHHHHHHHHHhc--CC----CcHHHHHHHhCCCC-CccCCCc
Q 022540           65 SFTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVS--QG----EDLSDLAVEHSICP-SKGEGGM  136 (295)
Q Consensus        65 ~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~hIl~~~~~~~~a~~~~~~i~--~g----~~F~~~a~~~S~~~-~~~~gG~  136 (295)
                      .|++.|. ++|..+..   .+..+++++++||+++.++.  |++++++|+  +|    ++|+++|++||.|+ ++.+||+
T Consensus        90 ~vtd~ei~~~Y~~~~~---~f~~~~~~~~~~I~~~~~~~--A~~~~~~l~~~~g~~~~~~F~~lA~~~S~~~~~~~~gGd  164 (252)
T 3rfw_A           90 KIDAAKVKAFYDQNKD---KYVKPARVQAKHILVATEKE--AKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGE  164 (252)
T ss_dssp             CCCHHHHHHHHHHHGG---GSEECCEEEEEEEEESSHHH--HHHHHHHHTTCCHHHHHHHHHHHHHHHCCCTTTGGGTTE
T ss_pred             CCCHHHHHHHHHHhHH---hccccceEEEEEEEeCCHHH--HHHHHHHHHhhcCCCccccHHHHHHHhCCCCchhhcCCc
Confidence            4555544 44444432   23567899999999998765  999999999  55    49999999999999 5667999


Q ss_pred             cccccCCCCcHHHHHHHHhCCCCccc--cccccceeEEEeeehhhhh
Q 022540          137 LGWVRKGQLVPEFEEVAFTTPLNKVA--RCKTKFGWHLLQVLSEREA  181 (295)
Q Consensus       137 lg~~~~~~~~~~~~~~~~~l~~G~vs--pv~~~~G~~ii~v~~~~~~  181 (295)
                      +||+..++++|+|.+++++|++|++|  |+++++|||++++.+.++.
T Consensus       165 lg~~~~~~l~~~f~~a~~~l~~G~is~~pv~t~~G~hii~v~~~~~~  211 (252)
T 3rfw_A          165 LGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKENSQAK  211 (252)
T ss_dssp             EEEECSSSSCHHHHHHHHHSCTTEECSSCEEETTEEEEEEEEEEECC
T ss_pred             ccccccccccHHHHHHHHcCCCCCccCceEEECCEEEEEEEEEecCC
Confidence            99999999999999999999999998  7999999999999987754

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.76  E-value=1.6e-19  Score=145.07  Aligned_cols=107  Identities=18%  Similarity=0.229  Sum_probs=79.2

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCC-CCccccccCC-CCC-cEEEEe-CCChhHH
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGS-WGPDITVKFD-PQK-DTYVMC-HHGMRSL  260 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~-~~~~~~~~~~-~~~-~ivv~C-~~g~rs~  260 (295)
                      ..++++++.+++.+....++.+|||||++ ||..||||||+|||+..+.. ..+.+...+. +++ .||+|| .+|.||.
T Consensus         5 ~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~~~~~~l~~~l~~~~~~~vV~yC~~sg~rs~   83 (152)
T 2j6p_A            5 TYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEEMYEKLAKTLFEEKKELAVFHCAQSLVRAP   83 (152)
T ss_dssp             EEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCHHHHHHHHHHHHHTTCCEEEEECSSSSSHHH
T ss_pred             CccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhHHHHHHHHHHhcccCCCEEEEEcCCCCCccH
Confidence            45778888888865100015789999999 99999999999999987643 1112211111 344 577779 7999998


Q ss_pred             HHH----HHHHHcCC--CceEEccccHhhcccccCCCC
Q 022540          261 QVA----QWLQTQGF--RRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       261 ~aa----~~L~~~G~--~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      .++    ..|++.||  .+|++|+||+.+|...+.+..
T Consensus        84 ~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~~  121 (152)
T 2j6p_A           84 KGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDVR  121 (152)
T ss_dssp             HHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCCC
Confidence            888    77888997  589999999999998887654

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.76  E-value=3e-19  Score=157.59  Aligned_cols=105  Identities=19%  Similarity=0.253  Sum_probs=80.3

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHH-----------hhcCCCCccccCccccCCCC-----cccc-----ccC
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEV-----------ALSSLPGFQVLPLRQFGSWG-----PDIT-----VKF  243 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~-----------~~ghIpgAinip~~~l~~~~-----~~~~-----~~~  243 (295)
                      ..++.+++.+.+.+    .+..|||||++.||           ..||||||+|||+..+....     ..+.     ..+
T Consensus       152 ~~i~~~e~~~~~~~----~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~~~~~~~~~~~~~~~l~~~~~~~~~  227 (280)
T 1urh_A          152 AVVKVTDVLLASHE----NTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGV  227 (280)
T ss_dssp             GBCCHHHHHHHHHH----TCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTC
T ss_pred             cEEcHHHHHHHhcC----CCcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeHHHhhcCCccCCHHHHHHHHHHcCC
Confidence            35788899888875    45789999999999           68999999999998876510     0111     135


Q ss_pred             CCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccc-cCCCCC
Q 022540          244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK-VDPSIP  293 (295)
Q Consensus       244 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~-~~p~~p  293 (295)
                      +++++|||||++|.||..++..|+.+||++|++|+|||.+|... +.|...
T Consensus       228 ~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~  278 (280)
T 1urh_A          228 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVEP  278 (280)
T ss_dssp             CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-----------
T ss_pred             CCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHhcCCCCCcee
Confidence            78999999999999999999999999999999999999999874 777653

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.76  E-value=2.7e-19  Score=151.53  Aligned_cols=108  Identities=14%  Similarity=0.182  Sum_probs=84.3

Q ss_pred             hcccccchhhhhhccCCC--ccccceeecCcchhHHhhcCCCCccccCccccCCC-CccccccCC--CCCcE--EEEeC-
Q 022540          183 LLQDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-GPDITVKFD--PQKDT--YVMCH-  254 (295)
Q Consensus       183 ~~~~is~~el~~~L~~~~--~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~-~~~~~~~~~--~~~~i--vv~C~-  254 (295)
                      ....++++++.+++.+..  ...+++|||||++.||..||||||+|||+..+... ... ...++  ++++|  ||||. 
T Consensus        42 ~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~~l~~~~~~~-~~~l~~~~d~~ivvVvyC~~  120 (211)
T 1qb0_A           42 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK-SPIAPCSLDKRVILIFHCEF  120 (211)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHT-TTCCCSSTTSEEEEEEECSS
T ss_pred             CCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCchHHHHHhhhh-hhhccccCCCCeEEEEECCC
Confidence            345688899999887520  00257899999999999999999999999765321 110 11233  67887  78899 


Q ss_pred             CChhHHHHHHHHHH----------cCCCceEEccccHhhcccccCCC
Q 022540          255 HGMRSLQVAQWLQT----------QGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       255 ~g~rs~~aa~~L~~----------~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      +|.||..++..|+.          +||++|++|+||+.+|...+.|.
T Consensus       121 sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~  167 (211)
T 1qb0_A          121 SSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNF  167 (211)
T ss_dssp             SSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGG
T ss_pred             CCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccc
Confidence            99999999999986          69999999999999999887754

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.76  E-value=2.7e-19  Score=147.08  Aligned_cols=108  Identities=13%  Similarity=0.156  Sum_probs=81.0

Q ss_pred             hcccccchhhhhhccCCC--ccccceeecCcchhHHhhcCCCCccccCccccCCC-CccccccC--CCCCcEEE--EeC-
Q 022540          183 LLQDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-GPDITVKF--DPQKDTYV--MCH-  254 (295)
Q Consensus       183 ~~~~is~~el~~~L~~~~--~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~-~~~~~~~~--~~~~~ivv--~C~-  254 (295)
                      ....++++++.+++.+..  ...+..|||||++.||..||||||+|||+..+... ... ...+  +++++|+|  ||+ 
T Consensus        22 ~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~~~~-~~~~~~~~~~~ivvv~yC~~  100 (175)
T 2a2k_A           22 DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLK-SPIAPCSLDKRVILIFHSEF  100 (175)
T ss_dssp             TSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHS-SCCCC----CEEEEEEECSS
T ss_pred             CCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChhHHHHHhhhh-hhhccccCCCCeEEEEECCC
Confidence            345688899999887520  00257899999999999999999999999765321 100 0112  37888754  699 


Q ss_pred             CChhHHHHHHHHHH----------cCCCceEEccccHhhcccccCCC
Q 022540          255 HGMRSLQVAQWLQT----------QGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       255 ~g~rs~~aa~~L~~----------~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      +|.||..++..|++          +||++|++|+||+.+|...+.|.
T Consensus       101 ~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~  147 (175)
T 2a2k_A          101 SSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNF  147 (175)
T ss_dssp             SSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGG
T ss_pred             CCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccc
Confidence            99999999999985          49999999999999999887664

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.75  E-value=1.4e-18  Score=152.61  Aligned_cols=103  Identities=19%  Similarity=0.283  Sum_probs=87.0

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCc-------------ccccc--CCCCCcEE
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGP-------------DITVK--FDPQKDTY  250 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~-------------~~~~~--~~~~~~iv  250 (295)
                      .++++++.+++.+    ++++|||||++.||..||||||+|||+..+.....             ..+..  ++++++||
T Consensus        10 ~is~~~l~~~l~~----~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vv   85 (271)
T 1e0c_A           10 VIEPADLQARLSA----PELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYV   85 (271)
T ss_dssp             EECHHHHHTTTTC----TTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEE
T ss_pred             eeeHHHHHHhccC----CCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEE
Confidence            5788899988875    46799999999999999999999999987754310             01222  57899999


Q ss_pred             EEeCCCh-hHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          251 VMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       251 v~C~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      |||.+|. +|..++..|+..||++|++|+||+.+|...+.|..
T Consensus        86 vyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~  128 (271)
T 1e0c_A           86 VYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLS  128 (271)
T ss_dssp             EECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCB
T ss_pred             EEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCcc
Confidence            9999988 99999999999999999999999999998887754

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.74  E-value=9.7e-19  Score=155.58  Aligned_cols=103  Identities=17%  Similarity=0.155  Sum_probs=85.4

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHH------------hhcCCCCccccCccccCCCCcc------c---cc--
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEV------------ALSSLPGFQVLPLRQFGSWGPD------I---TV--  241 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~------------~~ghIpgAinip~~~l~~~~~~------~---~~--  241 (295)
                      ..++.+++.+.+.+    .+.+|||||++.||            ..||||||+|||+..+......      +   +.  
T Consensus       160 ~~i~~~e~~~~~~~----~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~~~l~~~~~~~~~~~~l~~~~~~~  235 (296)
T 1rhs_A          160 LLKTYEQVLENLES----KRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAK  235 (296)
T ss_dssp             GEECHHHHHHHHHH----CCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHT
T ss_pred             eEEcHHHHHHHhcC----CCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecHHHhcCCCCcCCCHHHHHHHHHHc
Confidence            35778888888865    45789999999999            7899999999999887542111      1   11  


Q ss_pred             cCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhccc-ccCCC
Q 022540          242 KFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT-KVDPS  291 (295)
Q Consensus       242 ~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~-~~~p~  291 (295)
                      .++++++|||||++|.||..++..|+.+||++|++|+|||.+|.. .+.|.
T Consensus       236 ~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv  286 (296)
T 1rhs_A          236 KVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPET  286 (296)
T ss_dssp             TCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGG
T ss_pred             CCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCc
Confidence            357899999999999999999999999999999999999999987 45554

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.74  E-value=3e-18  Score=151.15  Aligned_cols=103  Identities=18%  Similarity=0.205  Sum_probs=86.2

Q ss_pred             cccchhhhhhccCCCccccceeecCc----------chhHHhhcCCCCccccCccccCCCCc-------------ccccc
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVR----------EPEEVALSSLPGFQVLPLRQFGSWGP-------------DITVK  242 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR----------~~~e~~~ghIpgAinip~~~l~~~~~-------------~~~~~  242 (295)
                      .++++++.+++.+    ++++|||+|          ++.||..||||||+|||+..+.....             ..+..
T Consensus         5 ~is~~~l~~~l~~----~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
T 1urh_A            5 FVGADWLAEHIDD----PEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRE   80 (280)
T ss_dssp             EECHHHHHTTTTC----TTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHH
T ss_pred             eeeHHHHHHhcCC----CCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            4778899988875    467999999          78899999999999999987654211             11122


Q ss_pred             --CCCCCcEEEEeCCChh-HHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          243 --FDPQKDTYVMCHHGMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       243 --~~~~~~ivv~C~~g~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                        ++++++|||||.+|.+ |..++..|+.+||++|++|+||+.+|...+.|..
T Consensus        81 ~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  133 (280)
T 1urh_A           81 LGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLE  133 (280)
T ss_dssp             TTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCB
T ss_pred             cCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCccc
Confidence              4789999999999998 8999999999999999999999999998887754

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.74  E-value=5.7e-19  Score=141.93  Aligned_cols=102  Identities=15%  Similarity=0.163  Sum_probs=78.2

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccC-CCCc-------cc-----cc--cCCCCCcE
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG-SWGP-------DI-----TV--KFDPQKDT  249 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~-~~~~-------~~-----~~--~~~~~~~i  249 (295)
                      ..++++++.+++++..  ++.+|||||++.||..||||||+|||+..+. ....       .+     ..  .++++++|
T Consensus         4 ~~Is~~~l~~~l~~~~--~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~i   81 (153)
T 2vsw_A            4 TQIVTERLVALLESGT--EKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKV   81 (153)
T ss_dssp             EEECHHHHHHHHTSTT--CCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTTSEE
T ss_pred             ccccHHHHHHHHhcCC--CCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhhcCCcCHHHhcCchhhhhhccCCCCeE
Confidence            3477889998887421  4679999999999999999999999998762 1000       11     01  24678999


Q ss_pred             EEEeCCChhHHHH------HHHHHH--cCCCceEEccccHhhccccc
Q 022540          250 YVMCHHGMRSLQV------AQWLQT--QGFRRVFNVSGGIHAYATKV  288 (295)
Q Consensus       250 vv~C~~g~rs~~a------a~~L~~--~G~~~v~~l~GG~~~W~~~~  288 (295)
                      ||||++|.++..+      +..|+.  .||++|++|+||+.+|....
T Consensus        82 Vvyc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~  128 (153)
T 2vsw_A           82 VVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCF  128 (153)
T ss_dssp             EEECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHC
T ss_pred             EEEeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhC
Confidence            9999999988765      466774  49999999999999998753

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.74  E-value=1.7e-18  Score=163.64  Aligned_cols=101  Identities=28%  Similarity=0.408  Sum_probs=90.1

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  263 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa  263 (295)
                      ...++.+++.+.+.+    .+..|||+|++.||..||||||+|+|+..+...    +..++++++||+||++|.||..++
T Consensus       373 ~~~i~~~~l~~~~~~----~~~~lvDvR~~~e~~~ghIpgA~~ip~~~l~~~----~~~l~~~~~vvv~C~~G~ra~~a~  444 (474)
T 3tp9_A          373 YANVSPDEVRGALAQ----QGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAH----IHDVPRDGSVCVYCRTGGRSAIAA  444 (474)
T ss_dssp             CEEECHHHHHHTTTT----TCCEEEECSCHHHHHHCBCTTCEECCHHHHTTT----GGGSCSSSCEEEECSSSHHHHHHH
T ss_pred             ccccCHHHHHHHhcC----CCcEEEECCCHHHHhcCcCCCCEECCHHHHHHH----HhcCCCCCEEEEECCCCHHHHHHH
Confidence            345778888888875    467899999999999999999999999988654    345789999999999999999999


Q ss_pred             HHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          264 QWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       264 ~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ..|+.+||++|++|+|||.+|...+.|..
T Consensus       445 ~~L~~~G~~~v~~~~Gg~~~W~~~g~p~~  473 (474)
T 3tp9_A          445 SLLRAHGVGDVRNMVGGYEAWRGKGFPVE  473 (474)
T ss_dssp             HHHHHHTCSSEEEETTHHHHHHHTTCCCB
T ss_pred             HHHHHcCCCCEEEecChHHHHHhCCCCCC
Confidence            99999999999999999999999988864

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.74  E-value=9.5e-19  Score=148.14  Aligned_cols=105  Identities=17%  Similarity=0.257  Sum_probs=78.5

Q ss_pred             cccccchhhhhhccCCC--ccccceeecCcchhHHhhcCCCCccccCccc-cCCCC-ccccccCCCCC--cEEEEeC-CC
Q 022540          184 LQDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQ-FGSWG-PDITVKFDPQK--DTYVMCH-HG  256 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~--~~~~~~iiDvR~~~e~~~ghIpgAinip~~~-l~~~~-~~~~~~~~~~~--~ivv~C~-~g  256 (295)
                      ...++++++.+++.+..  ..++++|||||++.||..||||||+|||+.. +.... .......++++  +|||||. +|
T Consensus        56 ~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~~~l~~~l~~~~~~~~~~~k~~~VVvyC~~SG  135 (216)
T 3op3_A           56 LKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNFFLKKPIVPLDTQKRIIIVFHCEFSS  135 (216)
T ss_dssp             SEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSHHHHHHHHTSSCCCCSSTTSEEEEEEECCC--
T ss_pred             CCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChHHHHHHHHhhccccccccCCCCEEEEEeCCCC
Confidence            55688999999997631  0015789999999999999999999999975 32110 00011123344  4999999 99


Q ss_pred             hhHHHHHHHHHHc----------CCCceEEccccHhhccccc
Q 022540          257 MRSLQVAQWLQTQ----------GFRRVFNVSGGIHAYATKV  288 (295)
Q Consensus       257 ~rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~~  288 (295)
                      .||..++..|+..          ||++|++|+||+.+|..+.
T Consensus       136 ~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~  177 (216)
T 3op3_A          136 ERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEY  177 (216)
T ss_dssp             CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTC
T ss_pred             hHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhC
Confidence            9999999999886          8999999999999998753

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.73  E-value=5.4e-19  Score=139.83  Aligned_cols=100  Identities=20%  Similarity=0.209  Sum_probs=72.9

Q ss_pred             ccchhhhh--------hccCCCccccceeecCcchhHHhhcCCCCccccCccccCCC-C---ccc--cccC------C--
Q 022540          187 IQPDELHK--------KMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW-G---PDI--TVKF------D--  244 (295)
Q Consensus       187 is~~el~~--------~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~-~---~~~--~~~~------~--  244 (295)
                      ++++++.+        .+.+    ++.+|||+|++.||..||||||+|||+..+... .   ...  ...+      .  
T Consensus         3 Is~~~l~~~l~~~~~~~l~~----~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (142)
T 2ouc_A            3 IYPNDLAKKMTKCSKSHLPS----QGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSF   78 (142)
T ss_dssp             ECHHHHHHHHHC--------------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHHHTTSSCHHHHHHTTSCTTHH
T ss_pred             cCHHHHHHHHHhcccccCCC----CCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHhhcCCcchhhhCCChhhhHHH
Confidence            56677777        4443    467899999999999999999999999764210 0   000  0000      0  


Q ss_pred             ---CCCcEEEEeCCChhH---------HHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          245 ---PQKDTYVMCHHGMRS---------LQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       245 ---~~~~ivv~C~~g~rs---------~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                         ++++|||||++|.++         ..++..|...|| +|++|+||+.+|...+.|.
T Consensus        79 ~~~~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~  136 (142)
T 2ouc_A           79 KRIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENL  136 (142)
T ss_dssp             HHHHHSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGG
T ss_pred             hccCCCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHh
Confidence               278999999999885         467888999999 9999999999999887653

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.73  E-value=1.4e-18  Score=156.09  Aligned_cols=104  Identities=10%  Similarity=0.111  Sum_probs=84.8

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhH-HhhcCCCCccccCccc-cCCCC----------cccccc--CCCCCcEE
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEE-VALSSLPGFQVLPLRQ-FGSWG----------PDITVK--FDPQKDTY  250 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e-~~~ghIpgAinip~~~-l~~~~----------~~~~~~--~~~~~~iv  250 (295)
                      ..++++++.+++.+    ++.+|||||++.| |..||||||+|||+.. +....          ...+..  ++++++||
T Consensus        40 ~~is~~~l~~~l~~----~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~lgi~~~~~vV  115 (318)
T 3hzu_A           40 RLVTADWLSAHMGA----PGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQFAELMDRKGIARDDTVV  115 (318)
T ss_dssp             GEECHHHHHHHTTC----TTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEE
T ss_pred             ceecHHHHHHhccC----CCEEEEECCCChhHHhcCcCCCCeEeCchhhhccCcccCCCCHHHHHHHHHHcCCCCCCeEE
Confidence            34788899998876    4689999999887 9999999999999842 21100          111222  57899999


Q ss_pred             EEeCCCh-hHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          251 VMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       251 v~C~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      |||++|. +|..++..|+..||++|++|+||+.+|..++.|..
T Consensus       116 vyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  158 (318)
T 3hzu_A          116 IYGDKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETT  158 (318)
T ss_dssp             EECSGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCB
T ss_pred             EECCCCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCcc
Confidence            9999887 89999999999999999999999999999988764

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.72  E-value=3.9e-18  Score=153.18  Aligned_cols=101  Identities=24%  Similarity=0.283  Sum_probs=83.6

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhh----------------cCCCCccccCccccCCCCc---------ccc
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL----------------SSLPGFQVLPLRQFGSWGP---------DIT  240 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~----------------ghIpgAinip~~~l~~~~~---------~~~  240 (295)
                      .++.+++.+.+.+     . .|||||++.||..                ||||||+|||+..+.....         ..+
T Consensus       180 ~i~~~el~~~l~~-----~-~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~~~~~~~~g~~~~~~~l~~~~  253 (318)
T 3hzu_A          180 RAFRDDVLAILGA-----Q-PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADESGRFRSREELERLY  253 (318)
T ss_dssp             BCCHHHHHHHTTT-----S-CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHT
T ss_pred             cccHHHHHHhhcC-----C-eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCHHHhcCCCCcCCCHHHHHHHh
Confidence            4678889888875     2 8999999999998                9999999999976543211         112


Q ss_pred             ccCCCCCcEEEEeCCChhHHHHHHHHHH-cCCCceEEccccHhhccc-ccCCCC
Q 022540          241 VKFDPQKDTYVMCHHGMRSLQVAQWLQT-QGFRRVFNVSGGIHAYAT-KVDPSI  292 (295)
Q Consensus       241 ~~~~~~~~ivv~C~~g~rs~~aa~~L~~-~G~~~v~~l~GG~~~W~~-~~~p~~  292 (295)
                      ..++++++|||||++|.||..++..|++ +||++|++|+|||.+|.. .+.|..
T Consensus       254 ~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~W~~~~g~Pv~  307 (318)
T 3hzu_A          254 DFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWGNAVRVPIV  307 (318)
T ss_dssp             TTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHHHTTSTTCCCB
T ss_pred             cCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcc
Confidence            3467899999999999999999999997 999999999999999985 466653

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.72  E-value=1.5e-19  Score=147.79  Aligned_cols=108  Identities=16%  Similarity=0.207  Sum_probs=81.4

Q ss_pred             hcccccchhhhhhccCCC---ccccceeecCcchhHHhhcCCCCccccCccccCCC---CccccccCC-------CCCcE
Q 022540          183 LLQDIQPDELHKKMQDPN---FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW---GPDITVKFD-------PQKDT  249 (295)
Q Consensus       183 ~~~~is~~el~~~L~~~~---~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~---~~~~~~~~~-------~~~~i  249 (295)
                      ....++++++.+++.+..   ..++++|||||+ .||..||||||+|||+..+...   ...+...+.       .+++|
T Consensus        29 ~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~I  107 (169)
T 3f4a_A           29 NVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNV  107 (169)
T ss_dssp             SEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHCHHHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             CCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhcccccHHHHHHHHHhhcccccCCCeE
Confidence            345688999999987531   012479999999 8999999999999999877543   222222111       14799


Q ss_pred             EEEeCCC-hhHHHHHHHHHH----cC--CCceEEccccHhhcccccCCC
Q 022540          250 YVMCHHG-MRSLQVAQWLQT----QG--FRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       250 vv~C~~g-~rs~~aa~~L~~----~G--~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      ||||.+| .||..++.+|.+    .|  +.+|++|+||+.+|...+.|.
T Consensus       108 VvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~~  156 (169)
T 3f4a_A          108 IFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDD  156 (169)
T ss_dssp             EEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTTC
T ss_pred             EEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCCc
Confidence            9999987 899988877765    36  578999999999999887654

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.72  E-value=7.4e-18  Score=144.49  Aligned_cols=96  Identities=30%  Similarity=0.423  Sum_probs=80.5

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhh----------cCCCCccccCccccCCCCccccc--cCCCCCcEEEEe
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVAL----------SSLPGFQVLPLRQFGSWGPDITV--KFDPQKDTYVMC  253 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~----------ghIpgAinip~~~l~~~~~~~~~--~~~~~~~ivv~C  253 (295)
                      .++.+++.+         +..|||+|++.||..          ||||||+|||+..+.... ++..  .++++++||+||
T Consensus       122 ~i~~~e~~~---------~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~-e~~~~~~~~~~~~iv~~C  191 (230)
T 2eg4_A          122 LLTADEAAR---------HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE-GLLERLGLQPGQEVGVYC  191 (230)
T ss_dssp             BCCHHHHHT---------CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT-THHHHHTCCTTCEEEEEC
T ss_pred             eeCHHHHhh---------CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH-HHHHhcCCCCCCCEEEEc
Confidence            355666654         257999999999999          999999999998875531 1222  467899999999


Q ss_pred             CCChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          254 HHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       254 ~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ++|.||..++..|+.+| .+|++|+||+.+|...+.|..
T Consensus       192 ~~G~rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p~~  229 (230)
T 2eg4_A          192 HSGARSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLPTE  229 (230)
T ss_dssp             SSSHHHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCCCB
T ss_pred             CChHHHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCCCC
Confidence            99999999999999999 899999999999999887753

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.72  E-value=6.9e-18  Score=149.17  Aligned_cols=104  Identities=21%  Similarity=0.279  Sum_probs=84.9

Q ss_pred             ccccchhhhhhcc---CCCccccceeecCcchhHHh----------------hcCCCCccccCccccCCCCc--------
Q 022540          185 QDIQPDELHKKMQ---DPNFHKEAQLIDVREPEEVA----------------LSSLPGFQVLPLRQFGSWGP--------  237 (295)
Q Consensus       185 ~~is~~el~~~L~---~~~~~~~~~iiDvR~~~e~~----------------~ghIpgAinip~~~l~~~~~--------  237 (295)
                      ..++.+++.+.+.   ..    ...|||||++.||.                .||||||+|||+..+.....        
T Consensus       146 ~~i~~~el~~~l~~~~~~----~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l  221 (285)
T 1uar_A          146 IRAYRDDVLEHIIKVKEG----KGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEEL  221 (285)
T ss_dssp             GEECHHHHHHHHHHHHTT----SEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHH
T ss_pred             eEEcHHHHHHHHhhcccC----CCcEEEcCCccceeeeccccccccccccccCCcCCCccccCHHHhcCCCCcCCCHHHH
Confidence            3478888988884   11    23699999999998                79999999999987754211        


Q ss_pred             -ccccc--CCCCCcEEEEeCCChhHHHHHHHHH-HcCCCceEEccccHhhcc-cccCCCC
Q 022540          238 -DITVK--FDPQKDTYVMCHHGMRSLQVAQWLQ-TQGFRRVFNVSGGIHAYA-TKVDPSI  292 (295)
Q Consensus       238 -~~~~~--~~~~~~ivv~C~~g~rs~~aa~~L~-~~G~~~v~~l~GG~~~W~-~~~~p~~  292 (295)
                       ..+..  ++++++|||||++|.||..++..|+ .+||++|++|+||+.+|. ..+.|..
T Consensus       222 ~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~  281 (285)
T 1uar_A          222 RALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIA  281 (285)
T ss_dssp             HHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCB
T ss_pred             HHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHHHhcCCCCCcc
Confidence             12222  6789999999999999999999999 999999999999999998 6777764

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.71  E-value=1.4e-17  Score=146.66  Aligned_cols=100  Identities=27%  Similarity=0.358  Sum_probs=81.5

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHhh----------------cCCCCccccCccccCCCCc---------cccc
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVAL----------------SSLPGFQVLPLRQFGSWGP---------DITV  241 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~----------------ghIpgAinip~~~l~~~~~---------~~~~  241 (295)
                      ++.+++.+.+.+    ..  |||+|++.||..                ||||||+|||+..+.....         ..+.
T Consensus       146 ~~~~el~~~~~~----~~--liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~  219 (277)
T 3aay_A          146 AFRDEVLAAINV----KN--LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAKLYA  219 (277)
T ss_dssp             ECHHHHHHTTTT----SE--EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHH
T ss_pred             cCHHHHHHhcCC----CC--EEEeCChHHeeeeecccccccccccccCCcCCCceecCHHHhcCCCCcCCCHHHHHHHHH
Confidence            567788888765    23  999999999986                9999999999986533211         1111


Q ss_pred             --cCCCCCcEEEEeCCChhHHHHHHHHHH-cCCCceEEccccHhhccc-ccCCCC
Q 022540          242 --KFDPQKDTYVMCHHGMRSLQVAQWLQT-QGFRRVFNVSGGIHAYAT-KVDPSI  292 (295)
Q Consensus       242 --~~~~~~~ivv~C~~g~rs~~aa~~L~~-~G~~~v~~l~GG~~~W~~-~~~p~~  292 (295)
                        .++++++|||||++|.||..++..|++ +||++|++|+||+.+|.. .+.|..
T Consensus       220 ~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~  274 (277)
T 3aay_A          220 DAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIE  274 (277)
T ss_dssp             HHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCB
T ss_pred             HcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHHHhcCCCCCCc
Confidence              357899999999999999999999996 999999999999999998 777754

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.71  E-value=3.3e-18  Score=150.64  Aligned_cols=103  Identities=11%  Similarity=0.087  Sum_probs=83.7

Q ss_pred             cccchhhhhhccCCCccccceeecCcc-hhHHhhcCCCCccccCccccCCC-----------Ccccccc--CCCCCcEEE
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVRE-PEEVALSSLPGFQVLPLRQFGSW-----------GPDITVK--FDPQKDTYV  251 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~-~~e~~~ghIpgAinip~~~l~~~-----------~~~~~~~--~~~~~~ivv  251 (295)
                      .++++++.+++.+    .+.+|||||+ +.||..||||||+|||+..+...           ....+..  ++++++|||
T Consensus         7 ~is~~~l~~~l~~----~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvv   82 (277)
T 3aay_A            7 LVSADWAESNLHA----PKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVIL   82 (277)
T ss_dssp             EECHHHHHTTTTC----TTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCSSSSSBCCHHHHHHHHHHHTCCTTSEEEE
T ss_pred             eEcHHHHHHHhCC----CCEEEEEcCCChhhHhhCCCCCcEEecccccccCCCCCCCCCHHHHHHHHHHcCCCCCCeEEE
Confidence            4778899888876    4678999998 89999999999999998753210           0111122  578999999


Q ss_pred             EeCCCh-hHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          252 MCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       252 ~C~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ||.+|. +|..++..|+.+||++|++|+||+.+|...+.|..
T Consensus        83 yc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  124 (277)
T 3aay_A           83 YGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLS  124 (277)
T ss_dssp             ECSGGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCB
T ss_pred             ECCCCCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCccc
Confidence            999875 68899999999999999999999999998887754

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}

Probab=99.70  E-value=4e-18  Score=153.53  Aligned_cols=109  Identities=15%  Similarity=0.218  Sum_probs=92.6

Q ss_pred             ChHhh-hccccCCCCCCCCCCCccEEEeeEEe-cc--------chHHHHHHHHHH-hcCCCcHHHHHHHhCCCC-CccCC
Q 022540           67 TSPKA-ASFSSGTEGSSPGGGDREILVQHLLV-KE--------DDLNLLSELQRR-VSQGEDLSDLAVEHSICP-SKGEG  134 (295)
Q Consensus        67 ~~~e~-~~~~~~~~~~~~~~~~~~~~~~hIl~-~~--------~~~~~a~~~~~~-i~~g~~F~~~a~~~S~~~-~~~~g  134 (295)
                      ++.|. ++|..+..     .-+..++++|||+ +.        .++++|++++++ |++|++|+++|++||+|+ ++.+|
T Consensus       141 td~ei~~yy~~~~~-----~~~~~~~~~~Ili~~~~~~~~~~~~~~~~a~~i~~~~l~~g~~F~~lA~~~S~d~~s~~~g  215 (325)
T 3nrk_A          141 NEQEIRSWYNQNKD-----KVGFEIRYRIISIAPENDSIQEENRLYKEVSEIRKSILADPSSFALIAGSPRNDPALRARR  215 (325)
T ss_dssp             CHHHHHHHHHHCHH-----HHCEEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSTTSCHHHHHTT
T ss_pred             CHHHHHHHHHHhhh-----hcCcceEEEEEEEecCCCCccchHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCccccccC
Confidence            55555 44545543     2356799999999 32        356779999999 999999999999999998 66999


Q ss_pred             CccccccCCCCc---HHHHHHHHhCCCCccc-cccccc-eeEEEeeehhhh
Q 022540          135 GMLGWVRKGQLV---PEFEEVAFTTPLNKVA-RCKTKF-GWHLLQVLSERE  180 (295)
Q Consensus       135 G~lg~~~~~~~~---~~~~~~~~~l~~G~vs-pv~~~~-G~~ii~v~~~~~  180 (295)
                      |+|||+..+.++   |+|.+++|+|++|++| ||++++ ||||+++.++++
T Consensus       216 G~lg~~~~~~l~~~~~~~~~a~~~l~~Geis~pv~t~~~G~hIikv~~~~~  266 (325)
T 3nrk_A          216 GMVEWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCILKIEGKRP  266 (325)
T ss_dssp             TEEEEEEHHHHHHHCHHHHHHHTTCCTTCBCCCEECTTSCEEEEEEEEEEE
T ss_pred             CcccccccccccccCHHHHHHHHcCCCCCCCceEEeCCCeEEEEEEeccCC
Confidence            999999999999   9999999999999999 999999 999999998753

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.70  E-value=1.9e-17  Score=133.82  Aligned_cols=104  Identities=20%  Similarity=0.182  Sum_probs=77.4

Q ss_pred             cccccchhhhhhccCCC----ccccceeecCcchhHHhhcCCCCccccCccccC------C-CCc--ccc------ccC-
Q 022540          184 LQDIQPDELHKKMQDPN----FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG------S-WGP--DIT------VKF-  243 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~----~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~------~-~~~--~~~------~~~-  243 (295)
                      ...++++++.+++....    ..++.+|||||++.||..||||||+|||+..+.      . ..+  .++      ..+ 
T Consensus        10 ~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (158)
T 3tg1_B           10 IKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFK   89 (158)
T ss_dssp             -CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHHTTSSCCHHHHTCCCCSSCSST
T ss_pred             CcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhhhcCcccHHhhcCCHHHHHHHh
Confidence            44578889998887310    014578999999999999999999999998752      1 110  000      111 


Q ss_pred             -CCCCcEEEEeCCC---------hhHHHHHHHHHHcCCCceEEccccHhhccccc
Q 022540          244 -DPQKDTYVMCHHG---------MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKV  288 (295)
Q Consensus       244 -~~~~~ivv~C~~g---------~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~  288 (295)
                       .++++|||||.+|         .+|..++..|+..|| +|++|+||+.+|....
T Consensus        90 ~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~~  143 (158)
T 3tg1_B           90 RIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNH  143 (158)
T ss_dssp             TTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTSSC
T ss_pred             ccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHHHh
Confidence             2478999999999         468999999999999 6999999999997653

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.70  E-value=2.6e-17  Score=146.30  Aligned_cols=107  Identities=13%  Similarity=0.164  Sum_probs=85.2

Q ss_pred             cccchhhhhhccCCCccccceeecCc--------chhHHhhcCCCCccccCccccCCCCc---cc----------cc--c
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVR--------EPEEVALSSLPGFQVLPLRQFGSWGP---DI----------TV--K  242 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR--------~~~e~~~ghIpgAinip~~~l~~~~~---~~----------~~--~  242 (295)
                      .++++++.+++.+....++.+|||||        ++.||..||||||+|||+..+.....   ..          +.  .
T Consensus         9 ~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~l~~lg   88 (296)
T 1rhs_A            9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSLG   88 (296)
T ss_dssp             EECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHHTT
T ss_pred             eeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence            57788898888651100257899999        68999999999999999987754321   11          11  2


Q ss_pred             CCCCCcEEEEeCC--Chh-HHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          243 FDPQKDTYVMCHH--GMR-SLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       243 ~~~~~~ivv~C~~--g~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ++++++|||||.+  |.+ +..++..|+..||++|++|+||+.+|...+.|..
T Consensus        89 i~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  141 (296)
T 1rhs_A           89 ISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVT  141 (296)
T ss_dssp             CCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCB
T ss_pred             CCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCccc
Confidence            5788999999998  876 7799999999999999999999999999888753

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.70  E-value=2.4e-18  Score=152.05  Aligned_cols=103  Identities=12%  Similarity=0.194  Sum_probs=84.0

Q ss_pred             cccchhhhhhccCCCccccceeecCc-chhHHhhcCCCCccccCccc-cCCC----------Ccccccc--CCCCCcEEE
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVR-EPEEVALSSLPGFQVLPLRQ-FGSW----------GPDITVK--FDPQKDTYV  251 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR-~~~e~~~ghIpgAinip~~~-l~~~----------~~~~~~~--~~~~~~ivv  251 (295)
                      .++++++.+++.+    .+.+||||| ++.+|..||||||+|||+.. +...          ....+..  ++++++|||
T Consensus         9 ~is~~~l~~~l~~----~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ivv   84 (285)
T 1uar_A            9 LVSTDWVQEHLED----PKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVL   84 (285)
T ss_dssp             EECHHHHHTTTTC----TTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEE
T ss_pred             eEcHHHHHHhcCC----CCEEEEEcCCCcchhhcCcCCCCEECCchhhccCCcccCCCCHHHHHHHHHHcCCCCCCeEEE
Confidence            4788899988875    467899999 78999999999999999974 2110          0111222  478999999


Q ss_pred             EeCCCh-hHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          252 MCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       252 ~C~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ||++|. +|..++..|+..||++|++|+||+.+|...+.|..
T Consensus        85 yc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  126 (285)
T 1uar_A           85 YGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLT  126 (285)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCB
T ss_pred             ECCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCccc
Confidence            999988 79999999999999999999999999998887654

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.70  E-value=3.7e-18  Score=137.25  Aligned_cols=100  Identities=13%  Similarity=0.101  Sum_probs=74.4

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccC------C--CCccc---------cccCCCCC
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG------S--WGPDI---------TVKFDPQK  247 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~------~--~~~~~---------~~~~~~~~  247 (295)
                      ..++++++.+++.+..  .+.+|||||++.||..||||||+|||+..+.      .  .....         ...+++++
T Consensus        16 ~~is~~~l~~~l~~~~--~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~   93 (154)
T 1hzm_A           16 ISKTVAWLNEQLELGN--ERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCGTD   93 (154)
T ss_dssp             SBSCCCCHHHHHHHCS--SSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHHSTTSS
T ss_pred             cccCHHHHHHHHhCCC--CCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcCcccHHHhCCCHHHHHHHhccCCCC
Confidence            4577888888886520  2678999999999999999999999997642      1  00011         12246789


Q ss_pred             cEEEEeCCChhH-------HHHHHHHHHc---CCCceEEccccHhhcccc
Q 022540          248 DTYVMCHHGMRS-------LQVAQWLQTQ---GFRRVFNVSGGIHAYATK  287 (295)
Q Consensus       248 ~ivv~C~~g~rs-------~~aa~~L~~~---G~~~v~~l~GG~~~W~~~  287 (295)
                      +|||||.+|.++       ..++..|+.+   ||+ |++|+||+.+|...
T Consensus        94 ~iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           94 TVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             CEEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred             eEEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence            999999998875       3335556654   998 99999999999764

>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A, periplasmic molecular chaperone, membrane protein folding, GRAM negative bacteria; 3.00A {Escherichia coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A

Probab=99.69  E-value=4.6e-18  Score=157.67  Aligned_cols=113  Identities=19%  Similarity=0.318  Sum_probs=93.1

Q ss_pred             ccChHhh-hccccCCCCCCCCCCCccEEEeeEEeccc----------hHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccC
Q 022540           65 SFTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKED----------DLNLLSELQRRVSQGEDLSDLAVEHSICPSKGE  133 (295)
Q Consensus        65 ~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~hIl~~~~----------~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~  133 (295)
                      .|++.|. ++|..+..   .+..+++++++||+++.+          .+++|++++++|++|++|+++|++||+|+++.+
T Consensus       131 ~vsd~ei~~~y~~~~~---~~~~~~~~~~~~i~i~~~~~~s~~~~~~~~~~a~~~~~~l~~g~~F~~lA~~~S~~~~~~~  207 (408)
T 1m5y_A          131 TILPQEVESLAQQVGN---QNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALN  207 (408)
T ss_dssp             CCCTTHHHHHHHCC----------CCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGG
T ss_pred             CCCHHHHHHHHHhhhh---hcCCcccEEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHcCCCccccc
Confidence            4455555 34444432   335678999999999853          256799999999999999999999999999999


Q ss_pred             CCccccccCCCCcHHHHHHHHhCCCCccc-cccccceeEEEeeehhhh
Q 022540          134 GGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSERE  180 (295)
Q Consensus       134 gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~~~~  180 (295)
                      ||+|||+..+.++++|.++++.|++|++| ||++++|||++++.+.++
T Consensus       208 gG~lg~~~~~~l~~~~~~~~~~l~~G~vs~pv~~~~g~~iikv~~~~~  255 (408)
T 1m5y_A          208 GGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRG  255 (408)
T ss_dssp             TTEEEEECGGGSCHHHHTGGGTCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred             CCcccccchhhccHHHHHHHHhCCCCCccCeeecCCeEEEEEEEEecC
Confidence            99999999999999999999999999999 999999999999988665

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.69  E-value=8.2e-18  Score=161.36  Aligned_cols=104  Identities=17%  Similarity=0.118  Sum_probs=88.5

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  263 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa  263 (295)
                      ...++++++.+.+.+.   ++.+|||||++.||..||||||+|||+..|..+...+.  .+++++|||||++|.+|..++
T Consensus         6 ~~~is~~~l~~~l~~~---~~~~liDvR~~~e~~~ghIpgAv~ip~~~~~~~~~~l~--~~~~~~iVvyc~~g~~s~~a~   80 (539)
T 1yt8_A            6 IAVRTFHDIRAALLAR---RELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARV--PRRDTPITVYDDGEGLAPVAA   80 (539)
T ss_dssp             CEEECHHHHHHHHHHT---CCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHHHHHS--CCTTSCEEEECSSSSHHHHHH
T ss_pred             CcccCHHHHHHHHhCC---CCeEEEECCCHHHHhcCcCCCCEECCHHHHHHHHHhhC--CCCCCeEEEEECCCChHHHHH
Confidence            3457888999988652   36799999999999999999999999988754422221  147899999999999999999


Q ss_pred             HHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          264 QWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       264 ~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ..|+..||++|++|+||+.+|...+.|..
T Consensus        81 ~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  109 (539)
T 1yt8_A           81 QRLHDLGYSDVALLDGGLSGWRNAGGELF  109 (539)
T ss_dssp             HHHHHTTCSSEEEETTHHHHHHHTTCCCB
T ss_pred             HHHHHcCCCceEEeCCCHHHHHhcCCCcc
Confidence            99999999999999999999999998864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.68  E-value=3.7e-17  Score=157.54  Aligned_cols=95  Identities=22%  Similarity=0.381  Sum_probs=82.7

Q ss_pred             hcccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHH
Q 022540          183 LLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQV  262 (295)
Q Consensus       183 ~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~a  262 (295)
                      ....++++++.++  +    ++..|||||++.||..||||||+|||+..+...    +..++++++||+||++|.||..+
T Consensus       471 ~~~~i~~~~~~~~--~----~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~~----~~~~~~~~~iv~~c~~g~rs~~a  540 (565)
T 3ntd_A          471 DATPIHFDQIDNL--S----EDQLLLDVRNPGELQNGGLEGAVNIPVDELRDR----MHELPKDKEIIIFSQVGLRGNVA  540 (565)
T ss_dssp             SCCEECTTTTTSC--C----TTEEEEECSCGGGGGGCCCTTCEECCGGGTTTS----GGGSCTTSEEEEECSSSHHHHHH
T ss_pred             ccceeeHHHHHhC--C----CCcEEEEeCCHHHHhcCCCCCcEECCHHHHHHH----HhhcCCcCeEEEEeCCchHHHHH
Confidence            3455777777766  2    567999999999999999999999999988654    44578999999999999999999


Q ss_pred             HHHHHHcCCCceEEccccHhhccccc
Q 022540          263 AQWLQTQGFRRVFNVSGGIHAYATKV  288 (295)
Q Consensus       263 a~~L~~~G~~~v~~l~GG~~~W~~~~  288 (295)
                      +..|++.|| +|++|+||+.+|...+
T Consensus       541 ~~~l~~~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          541 YRQLVNNGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             HHHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred             HHHHHHcCC-CEEEEcChHHHHHhCc
Confidence            999999999 9999999999998654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.67  E-value=3.2e-17  Score=158.87  Aligned_cols=99  Identities=30%  Similarity=0.548  Sum_probs=86.7

Q ss_pred             hhcccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHH
Q 022540          182 SLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQ  261 (295)
Q Consensus       182 ~~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~  261 (295)
                      .....++++++.+++.+     +..|||||++.||..||||||+|||+..+...    +..++++++||+||++|.||..
T Consensus       486 ~~~~~i~~~~~~~~~~~-----~~~~iDvR~~~e~~~ghi~ga~~ip~~~l~~~----~~~l~~~~~iv~~C~~g~rs~~  556 (588)
T 3ics_A          486 GFVDTVQWHEIDRIVEN-----GGYLIDVREPNELKQGMIKGSINIPLDELRDR----LEEVPVDKDIYITCQLGMRGYV  556 (588)
T ss_dssp             TSCCEECTTTHHHHHHT-----TCEEEECSCGGGGGGCBCTTEEECCHHHHTTC----GGGSCSSSCEEEECSSSHHHHH
T ss_pred             cccceecHHHHHHHhcC-----CCEEEEcCCHHHHhcCCCCCCEECCHHHHHHH----HhhCCCCCeEEEECCCCcHHHH
Confidence            33556888899888863     57899999999999999999999999988654    4456899999999999999999


Q ss_pred             HHHHHHHcCCCceEEccccHhhcccccCC
Q 022540          262 VAQWLQTQGFRRVFNVSGGIHAYATKVDP  290 (295)
Q Consensus       262 aa~~L~~~G~~~v~~l~GG~~~W~~~~~p  290 (295)
                      ++..|++.||+ |++|+||+.+|.....+
T Consensus       557 a~~~l~~~G~~-v~~l~GG~~~w~~~~~~  584 (588)
T 3ics_A          557 AARMLMEKGYK-VKNVDGGFKLYGTVLPE  584 (588)
T ss_dssp             HHHHHHHTTCC-EEEETTHHHHHHHHCGG
T ss_pred             HHHHHHHcCCc-EEEEcchHHHHHhhhhh
Confidence            99999999998 99999999999876544

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.67  E-value=2e-17  Score=158.68  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=88.7

Q ss_pred             ccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHH
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQ  264 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~  264 (295)
                      ..++.+++.+.+.+    .+..|||||++.||..||||||+|+|...|...    +..++++++|||||.+|.||..++.
T Consensus       377 ~~i~~~~l~~~l~~----~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~----l~~l~~~~~ivv~C~sG~rs~~aa~  448 (539)
T 1yt8_A          377 DTIDPTTLADWLGE----PGTRVLDFTASANYAKRHIPGAAWVLRSQLKQA----LERLGTAERYVLTCGSSLLARFAVA  448 (539)
T ss_dssp             CEECHHHHHHHTTS----TTEEEEECSCHHHHHHCBCTTCEECCGGGHHHH----HHHHCCCSEEEEECSSSHHHHHHHH
T ss_pred             CccCHHHHHHHhcC----CCeEEEEeCCHHHhhcCcCCCchhCCHHHHHHH----HHhCCCCCeEEEEeCCChHHHHHHH
Confidence            45778888888876    467899999999999999999999999887543    3446889999999999999999999


Q ss_pred             HHHHcCCCceEEccccHhhcccccCCCC
Q 022540          265 WLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       265 ~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      .|+..||++|++|+||+.+|...+.|..
T Consensus       449 ~L~~~G~~~v~~l~GG~~~W~~~g~pv~  476 (539)
T 1yt8_A          449 EVQALSGKPVFLLDGGTSAWVAAGLPTE  476 (539)
T ss_dssp             HHHHHHCSCEEEETTHHHHHHHTTCCCB
T ss_pred             HHHHcCCCCEEEeCCcHHHHHhCCCCcc
Confidence            9999999999999999999999888765

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.67  E-value=1.1e-16  Score=142.81  Aligned_cols=107  Identities=13%  Similarity=0.181  Sum_probs=83.1

Q ss_pred             cccchhhhhhccCCCccccceeecCc---------chhHHhhcCCCCccccCccccCCCCc-------------ccccc-
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVR---------EPEEVALSSLPGFQVLPLRQFGSWGP-------------DITVK-  242 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR---------~~~e~~~ghIpgAinip~~~l~~~~~-------------~~~~~-  242 (295)
                      .++++++.+.+.+....++.+|||||         ++.||..||||||+|||+..+.....             ..+.. 
T Consensus        23 lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~~~~~~lp~~~~~~~~~~~l  102 (302)
T 3olh_A           23 MVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEYAGRL  102 (302)
T ss_dssp             EECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSCSSSSCCCCHHHHHHHHHHT
T ss_pred             ccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCCCCCCCCCCHHHHHHHHHHc
Confidence            47888999988752111267999999         88999999999999999976532210             11112 


Q ss_pred             -CCCCCcEEEEeCC---ChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          243 -FDPQKDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       243 -~~~~~~ivv~C~~---g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                       ++++++|||||++   +.+|..++..|+..||++|++|+||+.+|..++.|..
T Consensus       103 gi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  156 (302)
T 3olh_A          103 GVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLS  156 (302)
T ss_dssp             TCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-C
T ss_pred             CCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCcc
Confidence             3788999999964   3468999999999999999999999999999887654

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.66  E-value=6.9e-17  Score=150.56  Aligned_cols=102  Identities=17%  Similarity=0.299  Sum_probs=81.8

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHH-----------hhcCCCCccccCcc-------ccCCCCc------cc--
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEV-----------ALSSLPGFQVLPLR-------QFGSWGP------DI--  239 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~-----------~~ghIpgAinip~~-------~l~~~~~------~~--  239 (295)
                      .++.+++.+.+.+    .+..|||||++.||           ..||||||+|+|+.       .+.....      .+  
T Consensus       273 ~i~~~e~~~~l~~----~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~l~~  348 (423)
T 2wlr_A          273 MLDMEQARGLLHR----QDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDITA  348 (423)
T ss_dssp             EECHHHHHTTTTC----SSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCCSSTTCCGGGBCTTSSBCCHHHHHH
T ss_pred             eecHHHHHHHhcC----CCceEEecCchhheeeeccCCCCCCcCCCCCCccccccccccccHHHHcCCCCcCCCHHHHHH
Confidence            4677888888765    46789999999999           78999999999986       1111000      11  


Q ss_pred             -c--ccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhccc-ccCCC
Q 022540          240 -T--VKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT-KVDPS  291 (295)
Q Consensus       240 -~--~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~-~~~p~  291 (295)
                       +  ..++++++|||||++|.||..++..|+.+||++|++|+||+.+|.. .+.|.
T Consensus       349 ~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv  404 (423)
T 2wlr_A          349 MWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPV  404 (423)
T ss_dssp             HHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHHHHTTSTTSCE
T ss_pred             HHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHHHHhcCCCCCc
Confidence             1  2357899999999999999999999999999999999999999987 55554

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.2e-16  Score=143.34  Aligned_cols=105  Identities=20%  Similarity=0.311  Sum_probs=83.3

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHh-----------hcCCCCccccCccccCCCCcccc---------------
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPDIT---------------  240 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~-----------~ghIpgAinip~~~l~~~~~~~~---------------  240 (295)
                      ++.+++.+.+.+.......+|||+|++.+|.           .||||||+|+|+..+........               
T Consensus       186 ~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~~~~~~~e~l~~~l~~~~  265 (327)
T 3utn_X          186 VDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETKTYPEAGEAIHATLEKAL  265 (327)
T ss_dssp             ECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTCCCCCTTHHHHHHHHHHH
T ss_pred             ecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCCCCCCCcHHHHHHHHHHHH
Confidence            5566777777653222356899999999996           39999999999987754321110               


Q ss_pred             ----ccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          241 ----VKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       241 ----~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                          ..++++++||+||++|.+|+..+..|..+||++|.+|+|+|.+|....+|.
T Consensus       266 ~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~~r~~pe  320 (327)
T 3utn_X          266 KDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLKSGPE  320 (327)
T ss_dssp             HHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHCGG
T ss_pred             HHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhccccCCc
Confidence                135788999999999999999999999999999999999999999877664

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.64  E-value=9.3e-17  Score=149.66  Aligned_cols=105  Identities=17%  Similarity=0.206  Sum_probs=82.8

Q ss_pred             ccchhhhhhccCCCc----cccceeecCc--chhHHhhcCCCCccccCccccCCCCcc----------cc--ccCCCCCc
Q 022540          187 IQPDELHKKMQDPNF----HKEAQLIDVR--EPEEVALSSLPGFQVLPLRQFGSWGPD----------IT--VKFDPQKD  248 (295)
Q Consensus       187 is~~el~~~L~~~~~----~~~~~iiDvR--~~~e~~~ghIpgAinip~~~l~~~~~~----------~~--~~~~~~~~  248 (295)
                      ++.+++.+.+.....    ..+..|||+|  ++.||..||||||+|||+..+......          .+  ..++++++
T Consensus       126 i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~~  205 (423)
T 2wlr_A          126 VYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDTT  205 (423)
T ss_dssp             ECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTTSE
T ss_pred             cCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCCCe
Confidence            555666666653210    1357899999  999999999999999999877431111          11  13578999


Q ss_pred             EEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          249 TYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       249 ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      ||+||++|.+|..++..|+.+||++|++|+||+.+|...+.|.
T Consensus       206 ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv  248 (423)
T 2wlr_A          206 VILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPV  248 (423)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCC
T ss_pred             EEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCc
Confidence            9999999999999999999999999999999999998877664

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.64  E-value=1.8e-16  Score=145.18  Aligned_cols=100  Identities=11%  Similarity=0.100  Sum_probs=81.3

Q ss_pred             ccccchhhhhhccCCCccccceeecCcc--------hhHHhhcCCCCccccCccc-cCCC--C---cc----------cc
Q 022540          185 QDIQPDELHKKMQDPNFHKEAQLIDVRE--------PEEVALSSLPGFQVLPLRQ-FGSW--G---PD----------IT  240 (295)
Q Consensus       185 ~~is~~el~~~L~~~~~~~~~~iiDvR~--------~~e~~~ghIpgAinip~~~-l~~~--~---~~----------~~  240 (295)
                      ..++++++.+++.     . .+|||||+        +.||..||||||+|||+.. +...  .   ..          .+
T Consensus        14 ~~Is~~el~~~l~-----~-~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~~~~~~~~lp~~~~f~~~l   87 (373)
T 1okg_A           14 VFLDPSEVADHLA-----E-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFIDWC   87 (373)
T ss_dssp             CEECHHHHTTCGG-----G-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHH
T ss_pred             cEEcHHHHHHHcC-----C-cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccccCCccccCCCHHHHHHHH
Confidence            4577888888775     2 68999998        6899999999999999986 6442  0   00          01


Q ss_pred             --ccCCCCCcEEEEe-CCChhHH-HHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          241 --VKFDPQKDTYVMC-HHGMRSL-QVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       241 --~~~~~~~~ivv~C-~~g~rs~-~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                        ..++++++||||| .+|.+|+ .++..|+.+|| +|++|+||+.+|...+.|.
T Consensus        88 ~~~gi~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv  141 (373)
T 1okg_A           88 MANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEM  141 (373)
T ss_dssp             HHTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCE
T ss_pred             HHcCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCc
Confidence              1347899999999 7788886 99999999999 9999999999999888764

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.63  E-value=2.4e-17  Score=155.45  Aligned_cols=80  Identities=24%  Similarity=0.407  Sum_probs=0.0

Q ss_pred             ccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHh
Q 022540          203 KEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIH  282 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~  282 (295)
                      ++..|||||++.||..||||||+|+|+..+...    +..++++++||+||++|.||..++..|+..||++|++|+||+.
T Consensus       386 ~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~----~~~l~~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~  461 (466)
T 3r2u_A          386 NESHILDVRNDNEWNNGHLSQAVHVPHGKLLET----DLPFNKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYK  461 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEEeCCHHHHhcCcCCCCEECCHHHHHHH----HhhCCCCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHH
Confidence            457899999999999999999999999988654    3446899999999999999999999999999999999999999


Q ss_pred             hccc
Q 022540          283 AYAT  286 (295)
Q Consensus       283 ~W~~  286 (295)
                      +|..
T Consensus       462 ~W~~  465 (466)
T 3r2u_A          462 DIQL  465 (466)
T ss_dssp             ----
T ss_pred             HHhh
Confidence            9974

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.62  E-value=1.7e-16  Score=145.30  Aligned_cols=84  Identities=15%  Similarity=0.214  Sum_probs=69.5

Q ss_pred             ccceeecCcchhHHh-----------hcCCCCccccCccccC--CCCcc-------c---cc----cCCC---CCcEEEE
Q 022540          203 KEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFG--SWGPD-------I---TV----KFDP---QKDTYVM  252 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~-----------~ghIpgAinip~~~l~--~~~~~-------~---~~----~~~~---~~~ivv~  252 (295)
                      .+..|||+|++.||.           .||||||+|||+..+.  .....       +   +.    .+++   +++||+|
T Consensus       173 ~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~~~~l~~~~~~~~~gi~~~~~d~~ivvy  252 (373)
T 1okg_A          173 PQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVFS  252 (373)
T ss_dssp             TTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEEE
T ss_pred             cCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCCCCccCCHHHHHHHHHhhhcCCCcccCCCCEEEE
Confidence            467899999999999           9999999999998875  21111       1   12    2367   8999999


Q ss_pred             eCCChhHHHHHHHHHHcCCCceEEccccHhhccc
Q 022540          253 CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT  286 (295)
Q Consensus       253 C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~  286 (295)
                      |++|.||..++..|+.+||++|++|+|||.+|..
T Consensus       253 C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~  286 (373)
T 1okg_A          253 CGSGVTACINIALVHHLGLGHPYLYCGSWSEYSG  286 (373)
T ss_dssp             CSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHcCCCCeeEeCChHHHHhc
Confidence            9999999999999999999999999999999976

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.59  E-value=7.1e-16  Score=132.07  Aligned_cols=80  Identities=19%  Similarity=0.177  Sum_probs=65.9

Q ss_pred             ccceeecCcchhHHhhcCCCCccccCcc--ccCCC-----------CccccccCCCCCcEEEEeCCCh-hHHHHHHHHHH
Q 022540          203 KEAQLIDVREPEEVALSSLPGFQVLPLR--QFGSW-----------GPDITVKFDPQKDTYVMCHHGM-RSLQVAQWLQT  268 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpgAinip~~--~l~~~-----------~~~~~~~~~~~~~ivv~C~~g~-rs~~aa~~L~~  268 (295)
                      ++.+|||+|++.||..||||||+|+|+.  .+...           ....+..++.+++|||||++|. +|..++..|+ 
T Consensus         5 ~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~-   83 (230)
T 2eg4_A            5 EDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELKALEGGLTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLG-   83 (230)
T ss_dssp             TTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHHHHHHHHHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHH-
T ss_pred             CCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcCCCHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHH-
Confidence            4678999999999999999999999998  44210           0112233455899999999998 9999999999 


Q ss_pred             cCCCceEEccccHhhccc
Q 022540          269 QGFRRVFNVSGGIHAYAT  286 (295)
Q Consensus       269 ~G~~~v~~l~GG~~~W~~  286 (295)
                      +||++|++|+||   |..
T Consensus        84 ~G~~~v~~l~GG---W~~   98 (230)
T 2eg4_A           84 LGGLEVQLWTEG---WEP   98 (230)
T ss_dssp             HTTCCEEEECSS---CGG
T ss_pred             cCCceEEEeCCC---Ccc
Confidence            999999999999   876

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.58  E-value=6.3e-16  Score=124.72  Aligned_cols=102  Identities=15%  Similarity=0.086  Sum_probs=70.6

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC--ccccccCC-----------CCCcEE
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG--PDITVKFD-----------PQKDTY  250 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~--~~~~~~~~-----------~~~~iv  250 (295)
                      ...++++++.+++.+..  .+.+|||||++.||..||||||+|||+..+....  ..+...++           +...||
T Consensus        14 ~~~i~~~~l~~~l~~~~--~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l~~~lp~~~~~~~~~~~~~~~VV   91 (157)
T 1whb_A           14 KGAITAKELYTMMTDKN--ISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVV   91 (157)
T ss_dssp             CSEECHHHHHHHHTCSS--SCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHHHHSCCTTHHHHHHGGGTSSEEE
T ss_pred             CCccCHHHHHHHHhcCC--CCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHHHHHCChHHHHHHHhcCCCCEEE
Confidence            34578889999887521  2679999999999999999999999997664321  01111111           234489


Q ss_pred             EEeCCChh----HHHHHHHHHH----c----CCCc-eEEccccHhhcccc
Q 022540          251 VMCHHGMR----SLQVAQWLQT----Q----GFRR-VFNVSGGIHAYATK  287 (295)
Q Consensus       251 v~C~~g~r----s~~aa~~L~~----~----G~~~-v~~l~GG~~~W~~~  287 (295)
                      |||.++.+    +..++..|.+    .    ||.+ |++|+||+.+|...
T Consensus        92 vy~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~  141 (157)
T 1whb_A           92 LLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  141 (157)
T ss_dssp             EECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH
T ss_pred             EECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH
Confidence            99987754    3445556552    2    4543 99999999999864

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.58  E-value=6.8e-16  Score=124.50  Aligned_cols=102  Identities=15%  Similarity=0.089  Sum_probs=70.3

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC--ccccccC-----------CCCCcEE
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG--PDITVKF-----------DPQKDTY  250 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~--~~~~~~~-----------~~~~~iv  250 (295)
                      ...++++++.+++.+..  .+.+|||||++.||..||||||+|||+..+....  ..+...+           .+...||
T Consensus        19 ~~~is~~~l~~~l~~~~--~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l~~~lp~~~~~l~~~~~~~~~VV   96 (157)
T 2gwf_A           19 SGAITAKELYTMMTDKN--ISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVV   96 (157)
T ss_dssp             CCEECHHHHHHHHHSTT--SCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEE
T ss_pred             CCccCHHHHHHHHhcCC--CCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHHHHHcCHHHHHHHHhcCCCCEEE
Confidence            34588899999887521  2679999999999999999999999998764321  0011111           2234588


Q ss_pred             EEeCCChh----HHHHHHHHH----Hc----CCCc-eEEccccHhhcccc
Q 022540          251 VMCHHGMR----SLQVAQWLQ----TQ----GFRR-VFNVSGGIHAYATK  287 (295)
Q Consensus       251 v~C~~g~r----s~~aa~~L~----~~----G~~~-v~~l~GG~~~W~~~  287 (295)
                      |||.+|.+    +..++..|.    ..    ||.+ |++|+||+.+|...
T Consensus        97 vy~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~  146 (157)
T 2gwf_A           97 LLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  146 (157)
T ss_dssp             EECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             EEcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH
Confidence            99987654    233445544    22    4544 99999999999864

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.46  E-value=3.3e-14  Score=134.26  Aligned_cols=98  Identities=16%  Similarity=0.280  Sum_probs=80.9

Q ss_pred             hcccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccc-cCCCCccccccCCCCCcEEEEeCCChhHHH
Q 022540          183 LLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQ-FGSWGPDITVKFDPQKDTYVMCHHGMRSLQ  261 (295)
Q Consensus       183 ~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~-l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~  261 (295)
                      ....++++++.+.+.+     . +|||+|++.+|..||||||+|+|++. |..+...+   .+++++|||||..|. +..
T Consensus       271 ~~~~is~~~l~~~l~~-----~-~iiD~R~~~~y~~ghIpGA~~i~~~~~~~~~~~~l---~~~~~~vvvy~~~~~-~~~  340 (474)
T 3tp9_A          271 ERVDLPPERVRAWREG-----G-VVLDVRPADAFAKRHLAGSLNIPWNKSFVTWAGWL---LPADRPIHLLAADAI-APD  340 (474)
T ss_dssp             EECCCCGGGHHHHHHT-----S-EEEECSCHHHHHHSEETTCEECCSSTTHHHHHHHH---CCSSSCEEEECCTTT-HHH
T ss_pred             CCceeCHHHHHHHhCC-----C-EEEECCChHHHhccCCCCeEEECcchHHHHHHHhc---CCCCCeEEEEECCCc-HHH
Confidence            3556889999999875     3 89999999999999999999999974 43332333   368899999999876 666


Q ss_pred             HHHHHHHcCCCceEEccccHhhcccccCC
Q 022540          262 VAQWLQTQGFRRVFNVSGGIHAYATKVDP  290 (295)
Q Consensus       262 aa~~L~~~G~~~v~~l~GG~~~W~~~~~p  290 (295)
                      ++.+|+.+||++|+.+.+|+.+|...+.|
T Consensus       341 ~~~~L~~~G~~~v~~~l~G~~~W~~~g~~  369 (474)
T 3tp9_A          341 VIRALRSIGIDDVVDWTDPAAVDRAAPDD  369 (474)
T ss_dssp             HHHHHHHTTCCCEEEEECGGGGTTCCGGG
T ss_pred             HHHHHHHcCCcceEEecCcHHHHHhcccc
Confidence            99999999999999877799999987654

>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A {Campylobacter jejuni}

Probab=99.41  E-value=1.3e-14  Score=125.95  Aligned_cols=94  Identities=13%  Similarity=0.098  Sum_probs=76.0

Q ss_pred             cChHhh-hccccCCCCCCCCCCCccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCC
Q 022540           66 FTSPKA-ASFSSGTEGSSPGGGDREILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQ  144 (295)
Q Consensus        66 ~~~~e~-~~~~~~~~~~~~~~~~~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~  144 (295)
                      |++.|. ++|..+..   .+..+++|+++||++..+      +++++|++|++|+             -||++||+..+.
T Consensus       114 vtd~ei~~yy~~~~~---~f~~~~~v~~~~i~~~~~------~~~~~l~~g~~f~-------------l~g~lg~~~~~~  171 (252)
T 3rgc_A          114 FSDDGAKKFFEQNKD---KFTFYTQINANIYLSNNP------QTLENIKNTKKTI-------------LKPQNASLNTSN  171 (252)
T ss_dssp             CCHHHHHHHHHTCGG---GCCEESEEEEEEEECSCH------HHHHHHHHHCCCC-------------SCCEEEEEETTT
T ss_pred             CCHHHHHHHHHhCHH---hcCCCceEEEEEecCCCH------HHHHHHHhCCCcc-------------cccccceecHHh
Confidence            456555 44445543   346678999999998653      3556777888886             278999999999


Q ss_pred             CcHHHHHHHHhCCCCccc-cccccceeEEEeeehhhhh
Q 022540          145 LVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLSEREA  181 (295)
Q Consensus       145 ~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~~~~~  181 (295)
                      ++|+|.+++++|++|++| |+++++|||++++.+.++.
T Consensus       172 l~~~~~~a~~~l~~G~is~pv~t~~G~hiikv~~~~~~  209 (252)
T 3rgc_A          172 ADPRLLGLLSQIPVGSFSPVLNGKNGYELYEVKSKDGT  209 (252)
T ss_dssp             SCHHHHHHHHHSCTTCBCCCBTTTTCEEEEEEEECSCE
T ss_pred             cCHHHHHHHHcCCCCCcCCcEEeCCeEEEEEEecccCC
Confidence            999999999999999999 8999999999999987763

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.24  E-value=1.2e-11  Score=110.91  Aligned_cols=104  Identities=13%  Similarity=0.130  Sum_probs=79.2

Q ss_pred             cccchhhhhhccCCCccccceeecCc--------c-hhHH-hhcCCCCccccCccccCCCCcccc---------------
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVR--------E-PEEV-ALSSLPGFQVLPLRQFGSWGPDIT---------------  240 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR--------~-~~e~-~~ghIpgAinip~~~l~~~~~~~~---------------  240 (295)
                      -++++++.++|...+. .++++||++        + ..|| +.||||||++++++.+........               
T Consensus        29 LIsp~~l~~ll~~~~~-~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~~~ph~LP~~~~f~~~l~~  107 (327)
T 3utn_X           29 LISPKAFVKLVASEKV-HRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAMSN  107 (327)
T ss_dssp             EECHHHHHHHHHHCSS-SCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTSSSTTCCCCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHhCCCC-CcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCCCCCCCCcCHHHHHHHHHH
Confidence            4788999998875321 357889984        3 3466 779999999999886644321111               


Q ss_pred             ccCCCCCcEEEEeCCCh-hHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          241 VKFDPQKDTYVMCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       241 ~~~~~~~~ivv~C~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                      ..+.++++||||.+.|. .|++++.+|+..|+++|++|+|| .+|..++.|.
T Consensus       108 lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~  158 (327)
T 3utn_X          108 LGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPL  158 (327)
T ss_dssp             TTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCC
T ss_pred             cCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCc
Confidence            13468999999998764 57899999999999999999977 8999988875

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.17  E-value=1.4e-11  Score=115.92  Aligned_cols=79  Identities=11%  Similarity=0.051  Sum_probs=62.2

Q ss_pred             ccceeecCcchhHHhhcCCCCccccCcc-ccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHHHHcCCCceEE-cccc
Q 022540          203 KEAQLIDVREPEEVALSSLPGFQVLPLR-QFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFN-VSGG  280 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~~ghIpgAinip~~-~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~-l~GG  280 (295)
                      ++.+|||+|++.+|..||||||+|||+. .+..+..++   ++++++||+||. +.++..++..|+..||++|+. ++|+
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~~~~~~~~~~~---~~~~~~vvly~~-~~~a~~a~~~L~~~G~~~v~~~l~g~  370 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPYDKNFINQIGWY---LNYDQEINLIGD-YHLVSKATHTLQLIGYDDIAGYQLPQ  370 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCSSTTHHHHHTTT---CCTTSCEEEESC-HHHHHHHHHHHHTTTCCCEEEEECCC
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCccHHHHHHHHhc---cCCCCeEEEEEC-CchHHHHHHHhhhhhcccccccccCc
Confidence            4679999999999999999999999997 354443332   478999999999 668999999999999999987 6676


Q ss_pred             Hhhcc
Q 022540          281 IHAYA  285 (295)
Q Consensus       281 ~~~W~  285 (295)
                      ...|.
T Consensus       371 ~~~~~  375 (466)
T 3r2u_A          371 SKIQT  375 (466)
T ss_dssp             -----
T ss_pred             ccccH
Confidence            55553

>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}

Probab=98.58  E-value=6.8e-09  Score=78.71  Aligned_cols=79  Identities=9%  Similarity=-0.116  Sum_probs=65.2

Q ss_pred             ccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEe
Q 022540           16 ITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQ   93 (295)
Q Consensus        16 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~   93 (295)
                      .++.....++.+++.+..+...|+.+ +.|| |..++.+||+|||+..+.++++|+.++|.+++++++ +...+-.||+-
T Consensus        33 ~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~S-d~~sa~~GGdLG~~~~~~~~~~f~~a~~~l~~GeiS~pv~t~~G~HII  111 (115)
T 2lj4_A           33 TYEDAIKELQKWSQRIASGEVSFEEAASQRS-DCGSYASGGDLGFFSSGEMMKPFEDAVRALKIGDISPIVQTDSGLHII  111 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHC-CSGGGGTTSEEEEEETTSSCHHHHHHHTTSCBTCBCCCEECSSSEEEE
T ss_pred             cHHHHHHHHHHHHHHHHcCchhHHHHHHHhC-CCcccccCCccceecCCCCCchHHHHHhcCCCCCCCCcEEeCCeEEEE
Confidence            34455666778888888888899999 9999 557899999999999999999999999999888765 55677778775


Q ss_pred             eE
Q 022540           94 HL   95 (295)
Q Consensus        94 hI   95 (295)
                      ..
T Consensus       112 kl  113 (115)
T 2lj4_A          112 KR  113 (115)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}

Probab=98.31  E-value=5.3e-08  Score=73.21  Aligned_cols=78  Identities=12%  Similarity=-0.094  Sum_probs=65.6

Q ss_pred             cccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeEE
Q 022540           19 SLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLL   96 (295)
Q Consensus        19 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl   96 (295)
                      ....+++.+++.+..+..+|+.+ +.||+|+.++.+||++||+..+.++++|+.++|.+++++++ +...+..||+-+++
T Consensus        26 ~a~~~a~~i~~~l~~G~~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~l~~Geis~pv~t~~G~hIikv~  105 (110)
T 4g2p_A           26 QARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELL  105 (110)
T ss_dssp             HHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHTCCTTCBCCCEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCcccHHHHHHHhCCCccccccccccCeecccccCHHHHHHHHcCCCCCcCccEEECCEEEEEEEE
Confidence            35566777888887776699999 99999999999999999999999999999999999888766 45667777776654

>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A

Probab=98.06  E-value=2.4e-07  Score=70.88  Aligned_cols=78  Identities=17%  Similarity=0.034  Sum_probs=62.3

Q ss_pred             cccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEee
Q 022540           17 TQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQH   94 (295)
Q Consensus        17 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~h   94 (295)
                      ++.....++.+++.+..+..+|+.| ++||++ .++.++|+|||+..+.++++|+.++|.+++++++ +...+..|||-.
T Consensus        42 ~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~-~sa~~GGdLG~~~~~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~  120 (123)
T 3i6c_A           42 QEEALELINGYIQKIKSGEEDFESLASQFSDC-SSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIIL  120 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSS-GGGGGTTEEEEEETTTSCHHHHHHHHHSCTTCBCSCEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCcccHHHHHHHhCCC-chhhhCCceeeEcCCCCCHHHHHHHHhCCCCCccccEEECCEEEEEE
Confidence            3444555667777887776799999 999976 5778999999999999999999999999887765 456667777655


Q ss_pred             E
Q 022540           95 L   95 (295)
Q Consensus        95 I   95 (295)
                      +
T Consensus       121 v  121 (123)
T 3i6c_A          121 R  121 (123)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}

Probab=98.02  E-value=2.6e-07  Score=69.49  Aligned_cols=91  Identities=8%  Similarity=-0.013  Sum_probs=70.3

Q ss_pred             ccccCCchhhhhccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC
Q 022540            4 RASQLASPVLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS   82 (295)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~   82 (295)
                      +.+||-=+.+++.++......+.+++.+..+ .+|+.+ ++||+++ ++.++|+|||+....++++|+.++|.+++++++
T Consensus         9 ~v~hIli~~~~~~~~~a~~~A~~i~~~l~~G-~~F~~lA~~~S~d~-sa~~GGdlG~~~~~~l~~~f~~a~~~l~~GeiS   86 (112)
T 3gpk_A            9 RIGEIFLAATEENKPQVFANAEKIVEQLKQG-GSFVAYARQYSEAS-TAAVGGDLGWIRLAQLPTELATTAASMGPGQLA   86 (112)
T ss_dssp             EEEEEEEECCGGGHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCST-TGGGTTEEEEECGGGSCHHHHHHHHHCCTTCEE
T ss_pred             EEEEEEEeCChhhHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCc-chhcCcccceEcccccCHHHHHHHHhCCCCCcc
Confidence            4455543344455666677778888888766 599999 9999995 788999999999999999999999999887765


Q ss_pred             -CCCCCccEEEeeEE
Q 022540           83 -PGGGDREILVQHLL   96 (295)
Q Consensus        83 -~~~~~~~~~~~hIl   96 (295)
                       +...+..|++-.+.
T Consensus        87 ~pv~t~~G~hIikv~  101 (112)
T 3gpk_A           87 GPVEIRGGFSILYLI  101 (112)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             ceEEECCEEEEEEEE
Confidence             45666677766554

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=97.89  E-value=8.6e-07  Score=71.42  Aligned_cols=78  Identities=17%  Similarity=0.034  Sum_probs=62.1

Q ss_pred             cccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEee
Q 022540           17 TQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQH   94 (295)
Q Consensus        17 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~h   94 (295)
                      ++.....++.+++.+..+..+|+.| ++||++ .++.+||+|||+..+.++++|+.++|.+++++++ +......|||-.
T Consensus        85 ~~~A~~~~~~i~~~l~~g~~~F~~lA~~~Sd~-~sa~~GGdLG~~~~~~l~~~f~~a~f~l~~GeiS~pv~t~~G~hIi~  163 (166)
T 3tc5_A           85 KEEALELINGYIQKIKSGEEDFESLASQFSDC-SSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIIL  163 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSS-GGGGGTTEEEEECTTSSCHHHHHHHHHSCTTCBCCCEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCccCHHHHHHHhCcc-cHHhcCCccceecccccCHHHHHHHHhCCCCCCcccEEECCEEEEEE
Confidence            3445555667777887776799999 999965 6788999999999999999999999999888765 455666776654


Q ss_pred             E
Q 022540           95 L   95 (295)
Q Consensus        95 I   95 (295)
                      +
T Consensus       164 v  164 (166)
T 3tc5_A          164 R  164 (166)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2pv1_A Chaperone SURA; surviVal protein A, peptidyl-prolyl CIS-trans isomerase domain, peptide, complex; 1.30A {Escherichia coli} SCOP: d.26.1.1 PDB: 2pv2_A

Probab=97.74  E-value=2.8e-06  Score=62.82  Aligned_cols=81  Identities=6%  Similarity=-0.119  Sum_probs=63.5

Q ss_pred             hhhccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccE
Q 022540           13 LCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREI   90 (295)
Q Consensus        13 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~   90 (295)
                      +++.++......+.+++.+..+ .+|+.+ +.||+++ ++.++|++||+....++++|+.++|.++.++++ +...+..|
T Consensus        17 ~~~~~~~a~~~a~~i~~~l~~g-~~F~~lA~~~S~~~-s~~~gG~lg~~~~~~l~~~f~~a~~~l~~G~is~pv~t~~G~   94 (103)
T 2pv1_A           17 TSDQVNEAESQARAIVDQARNG-ADFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGF   94 (103)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCST-TGGGTTEEEEECGGGSCHHHHHHTTTCCTTCEEEEEEETTEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHhCCCc-ccccCCccceEchhhcCHHHHHHHHcCCCCCeeccEEECCEE
Confidence            4555555666677777777665 589999 9999998 678999999999999999999999999887654 44556666


Q ss_pred             EEeeE
Q 022540           91 LVQHL   95 (295)
Q Consensus        91 ~~~hI   95 (295)
                      |+-.+
T Consensus        95 hii~v   99 (103)
T 2pv1_A           95 HILKV   99 (103)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66544

>2jzv_A Foldase protein PRSA; ppiase, parvulin, proline isomerase, lipoprotein, membrane, palmitate, rotamase; NMR {Staphylococcus aureus}

Probab=97.73  E-value=2.5e-06  Score=64.05  Aligned_cols=76  Identities=7%  Similarity=-0.140  Sum_probs=60.8

Q ss_pred             ccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeE
Q 022540           20 LIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHL   95 (295)
Q Consensus        20 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hI   95 (295)
                      .....+.+++.+..+..+|+.+ ++||+++.++.++|++||+....++++|+.++|.++.++++ +...+..||+-++
T Consensus        32 ~~~~a~~i~~~l~~g~~~F~~lA~~~S~d~~s~~~gG~lG~~~~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v  109 (111)
T 2jzv_A           32 AKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKA  109 (111)
T ss_dssp             HHHHHHHHHHHHHSCTTSHHHHHHHHCSCHHHHTTTTEEEEEETTSSCHHHHHHHHTCCTTCBCCCEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCcccHHHHHHHHCCCcchhhhCCccceecCCcccHHHHHHHHhCCCCCcCccEEECCEEEEEEE
Confidence            3445566777776664699999 99999998899999999999999999999999999887664 4555666665443

>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}

Probab=97.64  E-value=1.4e-05  Score=57.84  Aligned_cols=70  Identities=11%  Similarity=-0.019  Sum_probs=56.6

Q ss_pred             ccccCccchhccCCchhh-hhhccccCCCCCCCcceeEe-cccccChHhhhccccCCCCCC-CCCCCccEEEeeE
Q 022540           24 LNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHI-ISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHL   95 (295)
Q Consensus        24 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hI   95 (295)
                      .+.+++.+..+ .+|+.+ ++||+++ ++.++|++||+. ...+.++|+.++|.+++++++ +...+..||+-.+
T Consensus        18 A~~i~~~l~~g-~~F~~lA~~~S~~~-s~~~gG~lg~~~~~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v   90 (93)
T 1zk6_A           18 AEEVEKKLKKG-EKFEDLAKEYSTDS-SASKGGDLGWFAKEGQMDETFSKAAFKLKTGEVSDPVKTQYGYHIIKK   90 (93)
T ss_dssp             HHHHHHHHHHT-CCHHHHHHHHCCSG-GGGGTTEEEEECTTTSSCTTHHHHHHHSCTTCBCCCEECSSCEEEEEE
T ss_pred             HHHHHHHHHCC-CCHHHHHHHhCCCc-hhhhCCeeeeecccccCCHHHHHHHHcCCCCCccceEEECCEEEEEEE
Confidence            34555666665 499999 9999999 789999999999 999999999999999887765 5566667776554

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=97.64  E-value=3.6e-06  Score=68.62  Aligned_cols=78  Identities=10%  Similarity=-0.034  Sum_probs=61.1

Q ss_pred             cccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEee
Q 022540           17 TQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQH   94 (295)
Q Consensus        17 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~h   94 (295)
                      ++.....++.+++.+..+...|+.| +.||+++ ++.+||+|||+..+.++++|+.++|.+++++++ +...+..+||-.
T Consensus        96 ~~~A~~~~~~i~~~l~~G~~~F~~lA~~~S~~~-sa~~GGdLG~~~~~~l~~~f~~a~f~L~~GeiS~pv~t~~G~hIik  174 (177)
T 1yw5_A           96 RDESIQILKKHLERILSGEVKLSELANTESDCS-SHDRGGDLGFFSKGQMQPPFEEAAFNLHVGEVSNIIETNSGVHILQ  174 (177)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHCCSG-GGGGTTEEEEECTTSSCHHHHHHHHTSCTTCBCCCEEETTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCchhHHHHHHHhCCCc-chhcCCccceecccccCHHHHHHHHcCCCCCcCCeEEECCEEEEEE
Confidence            4444455666777777766689999 9999874 688999999999999999999999999888764 455666676654


Q ss_pred             E
Q 022540           95 L   95 (295)
Q Consensus        95 I   95 (295)
                      +
T Consensus       175 v  175 (177)
T 1yw5_A          175 R  175 (177)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} SCOP: d.26.1.1

Probab=97.60  E-value=2.7e-06  Score=66.50  Aligned_cols=78  Identities=8%  Similarity=-0.026  Sum_probs=61.1

Q ss_pred             hhccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEE
Q 022540           14 CAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREIL   91 (295)
Q Consensus        14 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~   91 (295)
                      ++.++.....++.+++.+..+...|+.+ ++||+++ ++.++|+|||+....++++|+.++|.+++++++ +...+..||
T Consensus        55 ~~~~~~A~~~a~~i~~~l~~G~~~F~~lA~~~S~~~-sa~~GGdLG~~~~~~l~~~f~~a~~~l~~GeiS~pv~t~~G~h  133 (139)
T 1j6y_A           55 TTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCS-SAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVH  133 (139)
T ss_dssp             CCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHH-HHHTCSEEEECSSSSSCTHHHHHHHHCCSSSCCSCEEETTEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHcCcccHHHHHHHhccCc-hhhcCCeeeeecccccCHHHHHHHHcCCCCCccccEEECCEEE
Confidence            4455566666777888887766679999 9999875 677999999999999999999999999887664 444555555


Q ss_pred             E
Q 022540           92 V   92 (295)
Q Consensus        92 ~   92 (295)
                      |
T Consensus       134 I  134 (139)
T 1j6y_A          134 I  134 (139)
T ss_dssp             C
T ss_pred             E
Confidence            4

>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}

Probab=97.57  E-value=1.5e-05  Score=58.27  Aligned_cols=70  Identities=11%  Similarity=-0.043  Sum_probs=56.8

Q ss_pred             cccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeE
Q 022540           25 NLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHL   95 (295)
Q Consensus        25 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hI   95 (295)
                      +.+++.+..+ .+|+.+ ++||+|..++.++|++||+....+.++|+.++|.++.++++ +...+..||+-++
T Consensus        24 ~~i~~~l~~g-~~F~~lA~~~S~d~~s~~~GG~lG~~~~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v   95 (97)
T 2rqs_A           24 LAVQERLKAG-EKFGKLAKELSIDGGSAKRDGSLGYFGRGKMVKPFEDAAFRLQVGEVSEPVKSEFGYHVIKR   95 (97)
T ss_dssp             HHHHHHHTTT-CCHHHHHHHTCCCCGGGGGTTEEEEECTTSSCHHHHHHHTTCTTSCBCCCEECSSCEEEEEE
T ss_pred             HHHHHHHHCC-CCHHHHHHHhCCCCcchhcCceeeeEcCCCCCHHHHHHHHcCCCCCccccEEECCEEEEEEE
Confidence            4455555555 489999 99999999999999999999999999999999999887765 5566667776544

>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A

Probab=97.56  E-value=1.5e-05  Score=58.62  Aligned_cols=67  Identities=10%  Similarity=0.003  Sum_probs=52.4

Q ss_pred             ccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-------CCCCCccEEEeeE
Q 022540           26 LSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-------PGGGDREILVQHL   95 (295)
Q Consensus        26 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-------~~~~~~~~~~~hI   95 (295)
                      .+.+.+..+ .+|+.+ ++||+|.  +.++|++||+....++++|+.++|.++.++++       +...+..||+-.+
T Consensus        23 ~i~~~l~~G-~~F~~lA~~~S~d~--a~~GGdlG~~~~~~l~~~f~~a~~~l~~G~vs~~~~~~~pv~t~~G~hIikv   97 (101)
T 3ui4_A           23 EAMEKLKSG-MRFNEVAAQYSEDK--ARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV   97 (101)
T ss_dssp             HHHHHHHTT-CCHHHHHHHHCSSS--GGGTTEEEEEETTSSCHHHHHHHHTSCCCBTTBCCBCSSCEEETTEEEEEEE
T ss_pred             HHHHHHHCC-CCHHHHHHHhCcCc--hhcCCceeeEcCCCCCHHHHHHHHhCCCCCCccCcccCCcEEECCEEEEEEE
Confidence            344455444 599999 9999984  67899999999999999999999999887765       3455666666554

>2kgj_A Peptidyl-prolyl CIS-trans isomerase D; prolyl isomerase, parvulin, cell inner membrane, cell membrane, membrane, rotamase, stress response; NMR {Escherichia coli}

Probab=97.55  E-value=6.5e-06  Score=60.76  Aligned_cols=73  Identities=11%  Similarity=-0.108  Sum_probs=57.3

Q ss_pred             ccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeEE
Q 022540           22 PTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLL   96 (295)
Q Consensus        22 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl   96 (295)
                      .+.+++++.+..+ .+|+.+ ++||+++.++.++|+|||+..+.++++|+.++|. ++++++ +...+..|++-.+.
T Consensus        17 ~~A~~i~~~l~~G-~~F~~lA~~~S~d~~sa~~GGdlG~~~~~~l~~~f~~a~~~-~~GeiS~pv~t~~G~hIikv~   91 (102)
T 2kgj_A           17 DEAKAVLDELNKG-GDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLK-EKGQLSGVIKSSVGFLIVRLD   91 (102)
T ss_dssp             HHHHHHHHHHHHT-SCHHHHHHHTCTTHHHHTTTSEEEEEETTCCCHHHHTTCCC-STTCEEEEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHCC-CCHHHHHHHhCCCchhhhcCCccceecccccCHHHHHHHhc-CCCCccccEEECCEEEEEEEe
Confidence            3344556666555 489999 9999999889999999999999999999999999 887654 44555666665543

>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A

Probab=97.54  E-value=1.4e-05  Score=57.69  Aligned_cols=70  Identities=4%  Similarity=-0.146  Sum_probs=55.5

Q ss_pred             ccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeE
Q 022540           24 LNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHL   95 (295)
Q Consensus        24 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hI   95 (295)
                      .+.+++.+..+. +|+.+ ++||+++ ++.++|++||+....++++|+.++|.+++++++ +...+..||+-.+
T Consensus        17 A~~i~~~l~~g~-~F~~lA~~~S~~~-s~~~gGdlg~~~~~~l~~~f~~a~~~l~~G~is~pv~t~~G~hIi~v   88 (92)
T 1jns_A           17 ALDLLEQIKNGA-DFGKLAKKHSICP-SGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKV   88 (92)
T ss_dssp             HHHHHHHHHHTC-CHHHHHHHHHCST-TTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHCCC-CHHHHHHHhCCCc-chhcCCeeeEEcCcccCHHHHHHHHhCCCCCcCCcEEECCEEEEEEE
Confidence            345556665554 89999 9999886 678999999999999999999999999887765 4556666766554

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=97.31  E-value=0.00016  Score=57.34  Aligned_cols=81  Identities=14%  Similarity=0.172  Sum_probs=48.2

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhH------------Hhhc-CCCCccccCccccCCCCcc----ccccC-CCCCc
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEE------------VALS-SLPGFQVLPLRQFGSWGPD----ITVKF-DPQKD  248 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e------------~~~g-hIpgAinip~~~l~~~~~~----~~~~~-~~~~~  248 (295)
                      ++.+++..+.+.    .-..|||+|++.|            +..+ +|.|.+|+|+... .....    +...+ ..+.|
T Consensus        30 ~~~~d~~~L~~~----Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~~-~~~~~~~~~~~~~l~~~~~p  104 (156)
T 2f46_A           30 LTKADAEQIAQL----GIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTAR-DIQKHDVETFRQLIGQAEYP  104 (156)
T ss_dssp             CCGGGHHHHHHH----TCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCTT-TCCHHHHHHHHHHHHTSCSS
T ss_pred             CCHHHHHHHHHC----CCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCCC-CCCHHHHHHHHHHHHhCCCC
Confidence            345555554332    1237999997655            3334 5988999998642 11111    11112 35789


Q ss_pred             EEEEeCCChhHHHHHHH-HHHcCCC
Q 022540          249 TYVMCHHGMRSLQVAQW-LQTQGFR  272 (295)
Q Consensus       249 ivv~C~~g~rs~~aa~~-L~~~G~~  272 (295)
                      |+|||.+|.|+..++.. |...|.+
T Consensus       105 VlvHC~sG~Rs~~l~al~l~~~g~~  129 (156)
T 2f46_A          105 VLAYCRTGTRCSLLWGFRRAAEGMP  129 (156)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCC
Confidence            99999999998755444 3445654

>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable chaperon unknown function; 3.10A {Leptospira interrogans serovar copenhaorganism_taxid}

Probab=96.72  E-value=0.00013  Score=65.09  Aligned_cols=76  Identities=9%  Similarity=-0.083  Sum_probs=60.6

Q ss_pred             ccccccccCcc-chhccCCchhh-hhhccccCCCCCCCcceeEeccccc---ChHhhhccccCCCCCC-CCCCCc-cEEE
Q 022540           20 LIPTLNLSSSS-SLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSF---TSPKAASFSSGTEGSS-PGGGDR-EILV   92 (295)
Q Consensus        20 ~~~~l~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~~~~~~~-~~~~~~-~~~~   92 (295)
                      ....++.+++. +.. ..+|+.+ +.||.++.++.+||.+||+..+.++   ++|+.++|.+++++++ +...+. .||+
T Consensus       180 ~~~~a~~i~~~~l~~-g~~F~~lA~~~S~d~~s~~~gG~lg~~~~~~l~~~~~~~~~a~~~l~~Geis~pv~t~~~G~hI  258 (325)
T 3nrk_A          180 LYKEVSEIRKSILAD-PSSFALIAGSPRNDPALRARRGMVEWISSFDLYKYSKITATIAAPLPNGGVSEVFRDERKRYCI  258 (325)
T ss_dssp             HHHHHHHHHHHHHHC-TTHHHHHHHSTTSCHHHHHTTTEEEEEEHHHHHHHCHHHHHHHTTCCTTCBCCCEECTTSCEEE
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHhCCCccccccCCcccccccccccccCHHHHHHHHcCCCCCCCceEEeCCCeEEE
Confidence            34445566666 544 4599999 9999999998999999999999999   9999999999888766 455566 6777


Q ss_pred             eeEE
Q 022540           93 QHLL   96 (295)
Q Consensus        93 ~hIl   96 (295)
                      -.+.
T Consensus       259 ikv~  262 (325)
T 3nrk_A          259 LKIE  262 (325)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6654

>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter jejuni}

Probab=96.36  E-value=0.00079  Score=57.60  Aligned_cols=63  Identities=10%  Similarity=-0.085  Sum_probs=54.0

Q ss_pred             CCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC--CCCCCccEEEeeEEec
Q 022540           36 QKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS--PGGGDREILVQHLLVK   98 (295)
Q Consensus        36 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~~hIl~~   98 (295)
                      .+|+.+ +.||.++.+..+||++||+..+.++++|+.++|.+++++++  +...+..||+-.+.=.
T Consensus       143 ~~F~~lA~~~S~~~~~~~~gGdlg~~~~~~l~~~f~~a~~~l~~G~is~~pv~t~~G~hii~v~~~  208 (252)
T 3rfw_A          143 AKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTNFGYHVILKENS  208 (252)
T ss_dssp             HHHHHHHHHHCCCTTTGGGTTEEEEECSSSSCHHHHHHHHHSCTTEECSSCEEETTEEEEEEEEEE
T ss_pred             ccHHHHHHHhCCCCchhhcCCcccccccccccHHHHHHHHcCCCCCccCceEEECCEEEEEEEEEe
Confidence            489999 99999999988899999999999999999999999888765  5567777877766544

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=87.49  E-value=0.048  Score=43.52  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=23.0

Q ss_pred             ceeecCcchhHHhhcCCCCccccCccccCC
Q 022540          205 AQLIDVREPEEVALSSLPGFQVLPLRQFGS  234 (295)
Q Consensus       205 ~~iiDvR~~~e~~~ghIpgAinip~~~l~~  234 (295)
                      ..+||||++.||.    |||+|||...+..
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg~lE~  147 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQLRVEV  147 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChhHHHH
Confidence            4899999999999    9999999987643

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=84.81  E-value=0.63  Score=35.45  Aligned_cols=67  Identities=24%  Similarity=0.368  Sum_probs=36.4

Q ss_pred             eeecCcchhHHhhcCCCC--ccccCccccCCCCcc----c---c-ccCCCCCcEEEEeCCCh-hHH-HHHHHH-HHcCCC
Q 022540          206 QLIDVREPEEVALSSLPG--FQVLPLRQFGSWGPD----I---T-VKFDPQKDTYVMCHHGM-RSL-QVAQWL-QTQGFR  272 (295)
Q Consensus       206 ~iiDvR~~~e~~~ghIpg--Ainip~~~l~~~~~~----~---~-~~~~~~~~ivv~C~~g~-rs~-~aa~~L-~~~G~~  272 (295)
                      .|+|+|+..+......+|  -+++|+.........    .   + ..+..+.+|+|+|..|. ||. .++..| ...|.+
T Consensus        38 ~Vi~l~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rsg~~~a~~l~~~~~~~  117 (150)
T 4erc_A           38 HLVSLTERGPPHSDSCPGLTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVKERGLA  117 (150)
T ss_dssp             EEEECSSSCCTTGGGCTTSEEEECCCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSHHHHHHHHHHHHHHHTCC
T ss_pred             EEEEcCCCCCCcccccCCceEEEEecCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHcCCC
Confidence            799999876543333344  234555433211111    0   1 11135689999999885 876 444434 446653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	295
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	7e-20
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	4e-15
d1eq3a_	96	d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar	1e-13
d1jnsa_	92	d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichi	8e-13
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	1e-12
d1j6ya_	120	d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Tha	2e-12
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	9e-11
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	3e-10
d1m5ya3	108	d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase	3e-10
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	4e-10
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	8e-10
d1pina2	119	d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain	1e-09
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	3e-09
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	3e-08
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	1e-07
d2pv2a1	103	d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase	1e-07
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	1e-06
d1t3ka_	132	c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {	3e-06
d1rhsa2	144	c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [	4e-06
d1urha2	120	c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtran	2e-05
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	4e-05
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	0.001
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	0.004

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 80.5 bits (198), Expect = 7e-20
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKF 243
            + I   + H+K+Q+      A L+D+R+P+  A+        L                
Sbjct: 4   FECINVADAHQKLQEKE----AVLVDIRDPQSFAMGHAVQAFHLTND----TLGAFMRDN 55

Query: 244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI 292
           D      VMC+HG  S   AQ+L  QG+  V+++ GG  A+  +    +
Sbjct: 56  DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPAEV 104

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 68.7 bits (167), Expect = 4e-15
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLR-QFGSWGPDITVK 242
           +  + P + +K +Q+   + +  LIDVR+P+E+     P  +      +           
Sbjct: 22  MVMLSPKDAYKLLQE---NPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSG 78

Query: 243 FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP 293
            DP+K   V C    R+    + L+  GF+ ++N  GG+  +  +  PS+ 
Sbjct: 79  LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLD 129

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

 Score = 63.1 bits (153), Expect = 1e-13
 Identities = 24/98 (24%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 89  EILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPE 148
            + V+H+L ++     + E   ++  G   +++A ++S   ++  G + GW+ +G +V  
Sbjct: 2   AVKVRHILCEKH--GKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDL-GWMTRGSMVGP 58

Query: 149 FEEVAFTTPLNKVARC-------KTKFGWHLLQVLSER 179
           F+E AF  P++ + +        KTKFG+H++ V   +
Sbjct: 59  FQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 96

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]} Length = 92

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

 Score = 61.2 bits (148), Expect = 8e-13
 Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 88  REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVP 147
           +     H+LVKE+ L    +L  ++  G D   LA +HSICPS   GG LG  R+GQ+VP
Sbjct: 2   KTAAALHILVKEEKL--ALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVP 59

Query: 148 EFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 176
            F++V F+ P+ +      T+FG+H+++VL
Sbjct: 60  AFDKVVFSCPVLEPTGPLHTQFGYHIIKVL 89

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 61.4 bits (148), Expect = 1e-12
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 13/119 (10%)

Query: 180 EASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDI 239
           E+ +   +     H  +         + +DVR PEE +     G   +P    G+ G   
Sbjct: 3   ESRVPSSVSVTVAHDLLL-----AGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSK 57

Query: 240 TVKF--------DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290
              F            +  V C  G RS++    L   GF  V ++ GG  A+A    P
Sbjct: 58  NTDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLP 116

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.6 bits (146), Expect = 2e-12
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 2/93 (2%)

Query: 87  DREILVQHLLVKEDDLNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWVRKGQL 145
           D E  +     +E  +  L  ++  +  G+ +  ++A   S C S   GG LG   +GQ+
Sbjct: 28  DPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQM 87

Query: 146 VPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLS 177
              FEE  +   +  ++    T  G H+++  +
Sbjct: 88  QKPFEEATYALKVGDISDIVDTDSGVHIIKRTA 120

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.9 bits (136), Expect = 9e-11
 Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 8/106 (7%)

Query: 185 QDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFD 244
             I P  L   + +P      +++D       A                S       +  
Sbjct: 5   DTIDPTTLADWLGEPG----TRVLDFTASANYAK----RHIPGAAWVLRSQLKQALERLG 56

Query: 245 PQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDP 290
             +   + C   + +      +Q    + VF + GG  A+     P
Sbjct: 57  TAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLP 102

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.2 bits (129), Expect = 3e-10
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 189 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKD 248
             ++   +      +E  L+DVRE +  A +       LPL +          + D    
Sbjct: 6   FHDIRAALLA---RRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRRD--TP 60

Query: 249 TYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYA 285
             V       +   AQ L   G+  V  + GG+  + 
Sbjct: 61  ITVYDDGEGLAPVAAQRLHDLGYSDVALLDGGLSGWR 97

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

 Score = 54.4 bits (130), Expect = 3e-10
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 10/102 (9%)

Query: 89  EILVQHLLVK-------EDDLNLLSELQRRVSQG-EDLSDLAVEHSICP-SKGEGGMLGW 139
           E+  +H+L+K       E     L ++   +  G    +  A E S  P S  +GG LGW
Sbjct: 6   EVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGW 65

Query: 140 VRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSERE 180
                  P F +        +++    + FGWHL+++L  R 
Sbjct: 66  ATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRN 107

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 6/100 (6%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 246
           +  +E+   +       EA ++D R  +E    S+PG   +P  +      ++    DP+
Sbjct: 26  LAAEEVQALLD---ARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAEL--APDPR 80

Query: 247 KDTYVMCHHGMRSLQVAQWLQTQGFRR-VFNVSGGIHAYA 285
               V C    RS+   Q L   G    V  +  G   + 
Sbjct: 81  TRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGTIGWT 120

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.8 bits (128), Expect = 8e-10
 Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 174 QVLSEREASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG 233
           + +++R    ++ +    L +   + +  +   L+DVR PEE     LPG +  P  Q  
Sbjct: 14  RAVADRAG--VERLDLAGLAQWQDEHD--RTTYLLDVRTPEEYEAGHLPGSRSTPGGQLV 69

Query: 234 SWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHA-YATKVDPSI 292
                +           ++   G+R+   A WL   G+ +V  + G   A ++ +   S 
Sbjct: 70  QETDHV--ASVRGARLVLVDDDGVRANMSASWLAQMGW-QVAVLDGLSEADFSERGAWSA 126

Query: 293 P 293
           P
Sbjct: 127 P 127

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 1e-09
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 21/118 (17%)

Query: 80  GSSPGGGDREILVQHLLV-------------------KEDDLNLLSELQRRVSQG-EDLS 119
           G +  G    +   HLLV                   KE+ L L++   +++  G ED  
Sbjct: 1   GKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFE 60

Query: 120 DLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVL 176
            LA + S C S    G LG   +GQ+   FE+ +F     +++    T  G H++   
Sbjct: 61  SLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 118

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (126), Expect = 3e-09
 Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 17/130 (13%)

Query: 171 HLLQVLSEREASLLQDIQPDELHKKMQDP--NFHKEAQLIDVREPEEVALSSLPGFQVLP 228
           +L   ++ +   L + I P+ +   +     N  KE  +ID R P E     + G   L 
Sbjct: 10  YLFHTVAGKHQDL-KYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLH 68

Query: 229 LRQF-GSWGPDITVKFDPQKDTYVM---CHHGMRSLQVAQWLQTQ----------GFRRV 274
           + +    +     +     K   V+        R  ++ ++++ +           +  +
Sbjct: 69  MEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPEL 128

Query: 275 FNVSGGIHAY 284
           + + GG   +
Sbjct: 129 YVLKGGYKEF 138

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 18/134 (13%)

Query: 171 HLLQVLSEREASLLQDIQPDELHKKMQ--DPNFHKEAQLIDVREPEEVALSSLPGFQVLP 228
            LLQ +  +   L + I P+ +   +     N   +  ++D R P E     +     LP
Sbjct: 10  FLLQTVDGKHQDL-KYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLP 68

Query: 229 LRQFGSWG--PDITVKFDPQKDTYVMCH---HGMRSLQVAQWLQTQ----------GFRR 273
           L +                 K   ++ H      R  ++ ++++ +           +  
Sbjct: 69  LERDAESFLLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPE 128

Query: 274 VFNVSGGIHAYATK 287
           ++ + GG   +  +
Sbjct: 129 MYILKGGYKEFFPQ 142

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 23/120 (19%)

Query: 189 PDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPG-------------------FQVLPL 229
            D L  ++   +      + D R P+E     +                           
Sbjct: 16  RDYLLGRLGAADL----AIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALR 71

Query: 230 RQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVD 289
            +    G    +   P K+    C    RS       +  G+ RV   +G    +    D
Sbjct: 72  IRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPD 131

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]} Length = 103

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

 Score = 47.1 bits (111), Expect = 1e-07
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 11/102 (10%)

Query: 89  EILVQHLLVK----------EDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLG 138
           E+ + H+L+            +  +    +  +   G D   LA+ HS       GG +G
Sbjct: 2   ELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMG 61

Query: 139 WVRKGQLVPEFEEVAFTTPLNKVAR-CKTKFGWHLLQVLSER 179
           W R  +L   F +   T     +    ++  G+H+L+V   R
Sbjct: 62  WGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLR 103

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 20/120 (16%)

Query: 181 ASLLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT 240
           ASL   I+P +L  ++  P       L+D+      A   +PG + +  ++     P   
Sbjct: 5   ASLPLVIEPADLQARLSAPEL----ILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAP 60

Query: 241 VKF----------------DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284
                                          G  + +    L   G +R   ++GG+ A+
Sbjct: 61  GLQPPREQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAW 120

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.6 bits (101), Expect = 3e-06
 Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 13/108 (12%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQ 246
           I   +L    + PN      +IDVR+ E      + G        F      +      +
Sbjct: 10  ITSTQLLPLHRRPN----IAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDK 65

Query: 247 KDTYVMCHH-GMRSLQVAQWLQT--------QGFRRVFNVSGGIHAYA 285
                      +R    A+ L           G + +  +  G + + 
Sbjct: 66  DTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWE 113

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (102), Expect = 4e-06
 Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 27/127 (21%)

Query: 190 DELHKKMQDPNFHKEAQLIDVREPEEVA-----------------LSSLPGFQVLPLRQF 232
           +++ + ++   F    QL+D R                        S    F        
Sbjct: 16  EQVLENLESKRF----QLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDG 71

Query: 233 GSWGPDI------TVKFDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYAT 286
               P+         K D  K     C  G+ +  +A      G   V    G    +  
Sbjct: 72  FEKSPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFH 131

Query: 287 KVDPSIP 293
           +  P   
Sbjct: 132 RAPPETW 138

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 17/116 (14%), Positives = 27/116 (23%), Gaps = 25/116 (21%)

Query: 190 DELHKKMQDPNFHKEAQLIDVREPEE---------------VALSSLPGFQVLPLRQFGS 234
            ++     +      AQ+ID R                       +L       +R+   
Sbjct: 9   TDVLLASHENT----AQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGEL 64

Query: 235 WGPDITVK------FDPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284
              D              K   V C  G+ +  V   L T     V    G    +
Sbjct: 65  KTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 120

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 4e-05
 Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 28/127 (22%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW----------G 236
           I   EL+  M D N      ++D R  ++   S +     +P                  
Sbjct: 3   ITAKELYTMMTDKN--ISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLP 60

Query: 237 PDITVKFDPQKDTYVMCHH----GMRSLQVAQWLQTQ------------GFRRVFNVSGG 280
            D    +  + +   +         + LQ+   L++                    + GG
Sbjct: 61  DDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGG 120

Query: 281 IHAYATK 287
              +   
Sbjct: 121 YENWLLC 127

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 12/113 (10%), Positives = 36/113 (31%), Gaps = 19/113 (16%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREP-EEVALSSLPGFQVLPLRQFGSWGPDITVKFDP 245
           +  D + + ++DP      ++++V E         +PG Q +  ++            + 
Sbjct: 9   VSTDWVQEHLEDPKV----RVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEE 64

Query: 246 QKDTYV--------------MCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY 284
           +    +                 +   +     + +  G + V  ++GG   +
Sbjct: 65  EFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKW 117

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 12/128 (9%), Positives = 30/128 (23%), Gaps = 30/128 (23%)

Query: 187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT------ 240
                L+++++  N  +   L+D R  E    S +     + +                 
Sbjct: 18  KTVAWLNEQLELGN--ERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRA 75

Query: 241 -----------VKFDPQKDTYVMCHHG----------MRSLQVAQWLQTQGFRRVFNVSG 279
                       +        +                    + + L+     R F + G
Sbjct: 76  LFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLK-DEGCRAFYLEG 134

Query: 280 GIHAYATK 287
           G   +  +
Sbjct: 135 GFSKFQAE 142

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1jnsa_	92	Parvulin 10 (rotamase C) {Escherichia coli [TaxId:	99.91
d1eq3a_	96	Parvulin {Human (Homo sapiens), hpar14 [TaxId: 960	99.9
d1pina2	119	Mitotic rotamase PIN1, domain 2 {Human (Homo sapie	99.89
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.89
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.88
d1m5ya3	108	Porin chaperone SurA, PPIase domains {Escherichia	99.87
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.87
d1j6ya_	120	Mitotic rotamase PIN1, domain 2 {Thale cress (Arab	99.87
d2pv2a1	103	Porin chaperone SurA, PPIase domains {Escherichia	99.86
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.86
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.86
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.84
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.84
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.84
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.82
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.82
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.78
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.77
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.77
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.76
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.76
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.75
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.72
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.59
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.57
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.46
d1pina2	119	Mitotic rotamase PIN1, domain 2 {Human (Homo sapie	97.97
d1m5ya3	108	Porin chaperone SurA, PPIase domains {Escherichia	97.91
d1eq3a_	96	Parvulin {Human (Homo sapiens), hpar14 [TaxId: 960	97.8
d1j6ya_	120	Mitotic rotamase PIN1, domain 2 {Thale cress (Arab	97.72
d1jnsa_	92	Parvulin 10 (rotamase C) {Escherichia coli [TaxId:	97.4
d2pv2a1	103	Porin chaperone SurA, PPIase domains {Escherichia	97.14
d1jl3a_	137	Arsenate reductase ArsC {Bacillus subtilis [TaxId:	83.45

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=7.7e-25  Score=159.14  Aligned_cols=89  Identities=40%  Similarity=0.758  Sum_probs=84.1

Q ss_pred             ccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCCccc-cccc
Q 022540           88 REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-RCKT  166 (295)
Q Consensus        88 ~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-pv~~  166 (295)
                      +.++++|||++.+++  |++++++|++|++|+++|++||+|+++.+||+|||+..+.++|+|.++++.|++|++| ||+|
T Consensus         2 ~~~~a~HIlv~~~~~--A~~i~~~l~~g~~F~~lA~~~S~d~s~~~gG~lG~~~~~~l~~~f~~~~~~l~~G~vs~pi~t   79 (92)
T d1jnsa_           2 KTAAALHILVKEEKL--ALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHT   79 (92)
T ss_dssp             CEEEEEEEEESSHHH--HHHHHHHHHHTCCHHHHHHHHHCSTTTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEEEEEE
T ss_pred             CcceEEEEEeCCHHH--HHHHHHHHHCCCCHHHHHHHhCCCcccchhhhhceeeHhhhhhHHHHHHHhCCCCCcCCCEEe
Confidence            468999999987766  9999999999999999999999999888999999999999999999999999999999 9999


Q ss_pred             cceeEEEeeehh
Q 022540          167 KFGWHLLQVLSE  178 (295)
Q Consensus       167 ~~G~~ii~v~~~  178 (295)
                      ++||||+++.++
T Consensus        80 ~~G~HIikv~dr   91 (92)
T d1jnsa_          80 QFGYHIIKVLYR   91 (92)
T ss_dssp             TTEEEEEEEECC
T ss_pred             CCeEEEEEEEeC
Confidence            999999998864

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

Probab=99.90  E-value=4.1e-24  Score=156.18  Aligned_cols=89  Identities=29%  Similarity=0.598  Sum_probs=82.0

Q ss_pred             ccEEEeeEEeccchHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCCCccc-----
Q 022540           88 REILVQHLLVKEDDLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPLNKVA-----  162 (295)
Q Consensus        88 ~~~~~~hIl~~~~~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~G~vs-----  162 (295)
                      +.|++||||+..+++  |++++++|++|++|++||++||+|+ +.+||+|||+..++++|+|.+++|.|++|++|     
T Consensus         1 ~~v~vrHIl~~~~~~--a~~i~~~i~~g~~F~~lA~~~S~d~-~~~~G~lG~~~~~~l~~ef~~a~f~l~~g~is~~~~~   77 (96)
T d1eq3a_           1 NAVKVRHILCEKHGK--IMEAMEKLKSGMRFNEVAAQYSEDK-ARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFT   77 (96)
T ss_dssp             CCEEEEEEEECCCST--HHHHHHHHTTTTSHHHHHHHHCCCT-TTCCSEEEEESSCCSSSHHHHHHHHCCSCCSSTTTBC
T ss_pred             CcEEEEEEEECCHHH--HHHHHHHHHCCCCHHHHHHHhCcCc-cccccccceechHHhhHHHHHHHHhCCCCcCcccccc
Confidence            468999999998887  9999999999999999999999996 45789999999999999999999999999986     


Q ss_pred             --cccccceeEEEeeehhh
Q 022540          163 --RCKTKFGWHLLQVLSER  179 (295)
Q Consensus       163 --pv~~~~G~~ii~v~~~~  179 (295)
                        ||+|.+||||+++.+++
T Consensus        78 ~~pi~T~~G~HIikv~~kr   96 (96)
T d1eq3a_          78 DPPVKTKFGYHIIMVEGRK   96 (96)
T ss_dssp             SSCEEETTEEEEEEEEECC
T ss_pred             CCCEecCCeEEEEEEeeEC
Confidence              79999999999998653

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.2e-24  Score=162.22  Aligned_cols=94  Identities=29%  Similarity=0.468  Sum_probs=85.1

Q ss_pred             CCCCccEEEeeEEeccc-------------------hHHHHHHHHHHhcCC-CcHHHHHHHhCCCCCccCCCccccccCC
Q 022540           84 GGGDREILVQHLLVKED-------------------DLNLLSELQRRVSQG-EDLSDLAVEHSICPSKGEGGMLGWVRKG  143 (295)
Q Consensus        84 ~~~~~~~~~~hIl~~~~-------------------~~~~a~~~~~~i~~g-~~F~~~a~~~S~~~~~~~gG~lg~~~~~  143 (295)
                      ...|++|+++||||+..                   +++++++++++|++| ++|++||++||+|+++.+||+|||+..+
T Consensus         5 ~~~p~~vr~~HILi~~~~~~~~~~~~~~~i~~~k~ea~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~gG~lg~~~~~   84 (119)
T d1pina2           5 QGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRG   84 (119)
T ss_dssp             CCCCSCEEEEEEEECCTTSSSCCBTTBSSCCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSGGGGGTTEEEEECTT
T ss_pred             CCCCcEEEEEEEEEecCCCcCchhhhhhhhhhhHHHHHHHHHHHHHHHHcChhhHHHHHHHcCCCccccccccccccccc
Confidence            46789999999999632                   346788999999988 6999999999999999999999999999


Q ss_pred             CCcHHHHHHHHhCCCCccc-cccccceeEEEeeeh
Q 022540          144 QLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVLS  177 (295)
Q Consensus       144 ~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~~  177 (295)
                      +|+|+|.+++++|++|++| ||+|++||||+++.+
T Consensus        85 ~l~~~f~~~~~~l~~GeiS~pi~t~~G~HIikv~d  119 (119)
T d1pina2          85 QMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE  119 (119)
T ss_dssp             SSCHHHHHHHHHCCTTCBCCCEECSSCEEEEEECC
T ss_pred             hHHHHHHHHHhcCCCCCcCCcEEeCCcEEEEEEeC
Confidence            9999999999999999999 999999999998753

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1e-24  Score=163.68  Aligned_cols=100  Identities=31%  Similarity=0.515  Sum_probs=88.6

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  263 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa  263 (295)
                      +..++++++.+++++    ++.+|||||++.||..||||||+|+|+..+...    +..++++++|||||.+|.||..++
T Consensus         4 ~~~Is~~e~~~~l~~----~~~~liDvR~~~e~~~ghI~gA~~ip~~~l~~~----~~~~~~~~~ivv~c~~g~rs~~~a   75 (108)
T d1gmxa_           4 FECINVADAHQKLQE----KEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAF----MRDNDFDTPVMVMCYHGNSSKGAA   75 (108)
T ss_dssp             CEEECHHHHHHHHHT----TCCEEEECSCHHHHHHCEETTCEECCHHHHHHH----HHHSCTTSCEEEECSSSSHHHHHH
T ss_pred             CCEeCHHHHHHHHHC----CCeEEEECCCHHHHHhcCCCCcccccchhHHHH----hhhccccCcccccCCCChHHHHHH
Confidence            456889999999987    567999999999999999999999999887543    455789999999999999999999


Q ss_pred             HHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          264 QWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       264 ~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ..|++.||+||++|+||+.+|.+. +|..
T Consensus        76 ~~L~~~G~~~v~~l~GG~~~W~~~-~p~e  103 (108)
T d1gmxa_          76 QYLLQQGYDVVYSIDGGFEAWQRQ-FPAE  103 (108)
T ss_dssp             HHHHHHTCSSEEEETTHHHHHHHH-CGGG
T ss_pred             HHHHHcCCCCEEEEcChHHHHHHc-CCCc
Confidence            999999999999999999999754 5653

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=1.3e-23  Score=160.27  Aligned_cols=102  Identities=25%  Similarity=0.402  Sum_probs=85.2

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCC----c----cccccCCCCCcEEEEeCCCh
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWG----P----DITVKFDPQKDTYVMCHHGM  257 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~----~----~~~~~~~~~~~ivv~C~~g~  257 (295)
                      .++.+.+.+++++     +..|||||++.||..||||||+|+|+..+....    .    .+...++++++|||||++|.
T Consensus         9 ~i~~~~a~~l~~~-----g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G~   83 (119)
T d1tq1a_           9 SVSVTVAHDLLLA-----GHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG   83 (119)
T ss_dssp             EEEHHHHHHHHHH-----TCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCS
T ss_pred             ccCHHHHHHHHHC-----cCEEEECCCHHHHHcCCCCCccchhhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCcC
Confidence            4667777777764     467999999999999999999999986543221    1    12234578999999999999


Q ss_pred             hHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          258 RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       258 rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ||..++..|.+.||+||++|+||+.+|...++|+.
T Consensus        84 rs~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~e  118 (119)
T d1tq1a_          84 RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  118 (119)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             cHHHHHHHHHhcccCCeEEecChHHHHHHCCCCcc
Confidence            99999999999999999999999999999999975

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=8.8e-23  Score=152.76  Aligned_cols=93  Identities=27%  Similarity=0.527  Sum_probs=84.7

Q ss_pred             CccEEEeeEEeccc-------hHHHHHHHHHHhcCC-CcHHHHHHHhCCCC-CccCCCccccccCCCCcHHHHHHHHhCC
Q 022540           87 DREILVQHLLVKED-------DLNLLSELQRRVSQG-EDLSDLAVEHSICP-SKGEGGMLGWVRKGQLVPEFEEVAFTTP  157 (295)
Q Consensus        87 ~~~~~~~hIl~~~~-------~~~~a~~~~~~i~~g-~~F~~~a~~~S~~~-~~~~gG~lg~~~~~~~~~~~~~~~~~l~  157 (295)
                      -.++++||||+++.       +++++++++.+|.+| ++|+++|++||+|+ ++.+||+|||+..+.++++|.+++++|+
T Consensus         4 ~tev~vrHILi~~~~~~~~~~a~~~~~~i~~~l~~~~~~F~~lA~~~S~d~~~~~~gG~lgw~~~~~l~~~~~~~~~~l~   83 (108)
T d1m5ya3           4 VTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLN   83 (108)
T ss_dssp             CEEEEEEEEEECCCSSSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHTCC
T ss_pred             ccEEEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCcccHHHHHHHhCcCCccccccccccccccccccHHHHHHHHhCC
Confidence            35799999999854       356788999999887 59999999999998 8899999999999999999999999999


Q ss_pred             CCccc-cccccceeEEEeeehhh
Q 022540          158 LNKVA-RCKTKFGWHLLQVLSER  179 (295)
Q Consensus       158 ~G~vs-pv~~~~G~~ii~v~~~~  179 (295)
                      +|++| |+++++||||+++.+++
T Consensus        84 ~GeiS~pi~t~~G~hIikl~~~r  106 (108)
T d1m5ya3          84 KGQMSAPVHSSFGWHLIELLDTR  106 (108)
T ss_dssp             TTCBCCCEECSSCEEEEEEEEEE
T ss_pred             CCCCCccEEeCCEEEEEEEEEEe
Confidence            99999 99999999999998765

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=2.2e-23  Score=162.65  Aligned_cols=104  Identities=20%  Similarity=0.257  Sum_probs=89.1

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  263 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa  263 (295)
                      ...++++++.++++++   ++..|||+|++.||..||||||+|||...+......+.  .+++++||+||++|.||..++
T Consensus        23 ~~~Is~~el~~~l~~~---~~~~liDvR~~~e~~~ghIpGAi~ip~~~l~~~~~~l~--~~~~~~iV~~C~~g~rs~~aa   97 (136)
T d1yt8a1          23 TPSLAAEEVQALLDAR---AEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELA--PDPRTRVIVNCAGRTRSIIGT   97 (136)
T ss_dssp             CCEECHHHHHHHHHTT---CSEEEEECSCHHHHHHSBCTTCEECCGGGHHHHHHHHC--CSTTSEEEEECSSSHHHHHHH
T ss_pred             CCccCHHHHHHHHhcC---CCcEEEEcCChhhccceecCCchhhhhhHHHHHhhccc--ccccceEEEEcCCCCchHHHH
Confidence            4568899999998653   56789999999999999999999999988755422221  146789999999999999999


Q ss_pred             HHHHHcCCCc-eEEccccHhhcccccCCCC
Q 022540          264 QWLQTQGFRR-VFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       264 ~~L~~~G~~~-v~~l~GG~~~W~~~~~p~~  292 (295)
                      .+|++.||.| |++|.||+.+|..++.|..
T Consensus        98 ~~L~~~G~~~~V~~L~GG~~~W~~~G~pve  127 (136)
T d1yt8a1          98 QSLLNAGIPNPVAALRNGTIGWTLAGQQLE  127 (136)
T ss_dssp             HHHHHTTCSSCEEEETTHHHHHHHTTCCCB
T ss_pred             HHHHHcCCCceEEEeCCcHHHHHHCCCCce
Confidence            9999999986 9999999999999998865

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=2.2e-23  Score=158.92  Aligned_cols=92  Identities=23%  Similarity=0.475  Sum_probs=83.0

Q ss_pred             CCCccEEEeeEEeccc-----------------------hHHHHHHHHHHhcCCC-cHHHHHHHhCCCCCccCCCccccc
Q 022540           85 GGDREILVQHLLVKED-----------------------DLNLLSELQRRVSQGE-DLSDLAVEHSICPSKGEGGMLGWV  140 (295)
Q Consensus        85 ~~~~~~~~~hIl~~~~-----------------------~~~~a~~~~~~i~~g~-~F~~~a~~~S~~~~~~~gG~lg~~  140 (295)
                      ...++|+++|||++..                       +.+.+++++++|.+|. +|+++|++||+++++.+||+|||+
T Consensus         3 ~s~e~vr~sHILik~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~s~~~GG~lGw~   82 (120)
T d1j6ya_           3 ASRDQVKASHILIKHQGSRRKASWKDPEGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSF   82 (120)
T ss_dssp             SSCCSCEEECCEECSCTTSSSSSCSCCCSCCCSCCCHHHHHHHHHHHHHHHHSSCCCCHHHHHHSSCHHHHHTCSEEEEC
T ss_pred             CCcceEEEEEEEEccCcccchhhhccccccccccccHHHHHHHHHHHHHHHHcCcccHHHHHHHhCCCcccccccccccc
Confidence            4567899999999732                       2567899999998885 999999999988899999999999


Q ss_pred             cCCCCcHHHHHHHHhCCCCccc-cccccceeEEEeee
Q 022540          141 RKGQLVPEFEEVAFTTPLNKVA-RCKTKFGWHLLQVL  176 (295)
Q Consensus       141 ~~~~~~~~~~~~~~~l~~G~vs-pv~~~~G~~ii~v~  176 (295)
                      ..++++|+|.++++.|++|++| ||+|++||||+++.
T Consensus        83 ~~~~l~~~f~~~~~~l~~G~is~pi~t~~G~HIikvt  119 (120)
T d1j6ya_          83 GRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT  119 (120)
T ss_dssp             SSSSSCTHHHHHHHHCCSSSCCSCEEETTEEECCCSC
T ss_pred             hhhhcChHHHHHHHcCCCCCcCCCEEeCCeeEEEEEe
Confidence            9999999999999999999999 99999999999764

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.9e-22  Score=149.68  Aligned_cols=90  Identities=23%  Similarity=0.393  Sum_probs=83.7

Q ss_pred             cEEEeeEEeccc----------hHHHHHHHHHHhcCCCcHHHHHHHhCCCCCccCCCccccccCCCCcHHHHHHHHhCCC
Q 022540           89 EILVQHLLVKED----------DLNLLSELQRRVSQGEDLSDLAVEHSICPSKGEGGMLGWVRKGQLVPEFEEVAFTTPL  158 (295)
Q Consensus        89 ~~~~~hIl~~~~----------~~~~a~~~~~~i~~g~~F~~~a~~~S~~~~~~~gG~lg~~~~~~~~~~~~~~~~~l~~  158 (295)
                      +|+++||||+..          .++.|++++++|++|++|+++|++||+|+++.+||+|||+..++++++|.+++++|++
T Consensus         2 e~~~~hIli~~~~~~~~~~~~~~~~~a~~~~~~l~~g~~F~~la~~~S~~~~~~~gG~lg~~~~~~l~~~~~~~i~~l~~   81 (103)
T d2pv2a1           2 ELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKK   81 (103)
T ss_dssp             EEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCSTTGGGTTEEEEEEGGGSBHHHHHHHHTCCT
T ss_pred             ceEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHhcccccccccccccccccccccccchhhhhhhhhcCC
Confidence            699999999743          2567899999999999999999999999999999999999999999999999999999


Q ss_pred             Cccc-cccccceeEEEeeehh
Q 022540          159 NKVA-RCKTKFGWHLLQVLSE  178 (295)
Q Consensus       159 G~vs-pv~~~~G~~ii~v~~~  178 (295)
                      |++| |+++++||||+++.++
T Consensus        82 G~is~pi~t~~G~hIikl~~~  102 (103)
T d2pv2a1          82 GDIVGPIRSGVGFHILKVNDL  102 (103)
T ss_dssp             TCEEEEEEETTEEEEEEEEEE
T ss_pred             CCCCCcEEECCEEEEEEEeeE
Confidence            9999 9999999999998764

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=4.8e-23  Score=152.55  Aligned_cols=98  Identities=18%  Similarity=0.126  Sum_probs=82.4

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHHHHH
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVAQWL  266 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa~~L  266 (295)
                      ++.+++++.|.++   +...|||+|++.||..||||||+|+|...+......+  ...++++|++||++|.+|..++..|
T Consensus         4 ~S~~~l~~~l~~~---~~~~liDvR~~~e~~~ghIpgAi~~~~~~~~~~~~~~--~~~~~~~vv~~~~~g~~s~~~~~~l   78 (101)
T d1yt8a2           4 RTFHDIRAALLAR---RELALLDVREEDPFAQAHPLFAANLPLSRLELEIHAR--VPRRDTPITVYDDGEGLAPVAAQRL   78 (101)
T ss_dssp             ECHHHHHHHHHHT---CCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHHHHH--SCCTTSCEEEECSSSSHHHHHHHHH
T ss_pred             CcHHHHHHHHHCC---CCeEEEECCCHHHHHhccCCCcccccccchhhhhhhc--ccccCceeeeccchhhhHHHHHHHH
Confidence            5677888877553   5679999999999999999999999998764332222  1246789999999999999999999


Q ss_pred             HHcCCCceEEccccHhhcccccC
Q 022540          267 QTQGFRRVFNVSGGIHAYATKVD  289 (295)
Q Consensus       267 ~~~G~~~v~~l~GG~~~W~~~~~  289 (295)
                      +++||+||++|+||+.+|.++|.
T Consensus        79 ~~~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          79 HDLGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             HHTTCSSEEEETTHHHHHHHTTC
T ss_pred             HHcCCCcEEEeCChHHHHHHCcC
Confidence            99999999999999999988764

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.86  E-value=5.3e-23  Score=160.62  Aligned_cols=107  Identities=22%  Similarity=0.450  Sum_probs=91.0

Q ss_pred             hcccccchhhhhhccCCCccccceeecCcchhHHhhcC---CCCccccCccccCCCCccccccCCCCCcEEEEeCCChhH
Q 022540          183 LLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSS---LPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRS  259 (295)
Q Consensus       183 ~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~gh---IpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs  259 (295)
                      ....++++++.++|.+.   ++++|||||++.||..+|   |+||+|+|...+..+..  ...++++++|||||++|.||
T Consensus        21 ~~~~Isp~e~~~ll~~~---~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~~l~~~~~--~~~~~~~~~ivvyC~~G~rs   95 (137)
T d1qxna_          21 DMVMLSPKDAYKLLQEN---PDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLA--KSGLDPEKPVVVFCKTAARA   95 (137)
T ss_dssp             SSEEECHHHHHHHHHHC---TTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHHHH--HHCCCTTSCEEEECCSSSCH
T ss_pred             cCCEEcHHHHHHHHHcC---cCEEEEECCcHHHHHHhccccccccccCCccccccccc--ccccCcccceeeeecccchH
Confidence            34568899999999753   568999999999999998   66789999876643211  12357899999999999999


Q ss_pred             HHHHHHHHHcCCCceEEccccHhhcccccCCCCCC
Q 022540          260 LQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIPT  294 (295)
Q Consensus       260 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~p~  294 (295)
                      ..++..|++.||+||++|+||+.+|...++|+++.
T Consensus        96 ~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~~~  130 (137)
T d1qxna_          96 ALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR  130 (137)
T ss_dssp             HHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECC
T ss_pred             HHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCCCC
Confidence            99999999999999999999999999999999875

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=4.3e-22  Score=154.09  Aligned_cols=106  Identities=23%  Similarity=0.276  Sum_probs=87.7

Q ss_pred             hcccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHH
Q 022540          183 LLQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQV  262 (295)
Q Consensus       183 ~~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~a  262 (295)
                      ....++.+++.+++.+..  ....|||||++.||..||||||+|+|+..+..+...+  ..+++++|||||.+|.||..+
T Consensus        21 ~~~~I~~~e~~~~l~~~~--~~~~liDvR~~~e~~~ghipgai~~p~~~~~~~~~~~--~~~~~~~ivl~C~~G~rS~~a   96 (130)
T d1yt8a4          21 GVERLDLAGLAQWQDEHD--RTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHV--ASVRGARLVLVDDDGVRANMS   96 (130)
T ss_dssp             TCEEECHHHHHHHHHCTT--SCEEEEECSCHHHHHHCBCTTCEECCHHHHHHSHHHH--CCSBTCEEEEECSSSSHHHHH
T ss_pred             CCcccCHHHHHHHHHccC--CCEEEEECCCcHHHhcCccCCcccccccccccccccc--cCCccceEEeecCCCccHHHH
Confidence            355688999999987632  3578999999999999999999999998775442221  246889999999999999999


Q ss_pred             HHHHHHcCCCceEEccccHhhccccc-CCCCC
Q 022540          263 AQWLQTQGFRRVFNVSGGIHAYATKV-DPSIP  293 (295)
Q Consensus       263 a~~L~~~G~~~v~~l~GG~~~W~~~~-~p~~p  293 (295)
                      +.+|+++|| ++++|+||+.+|..++ .+..|
T Consensus        97 a~~L~~~G~-~v~~l~GG~~aw~~~~g~~~~p  127 (130)
T d1yt8a4          97 ASWLAQMGW-QVAVLDGLSEADFSERGAWSAP  127 (130)
T ss_dssp             HHHHHHTTC-EEEEECSCCGGGCCBCSSCCCC
T ss_pred             HHHHHHcCC-CeEEEcCchHHHHHhcCCCCCC
Confidence            999999999 7999999999997664 55554

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=4.2e-22  Score=159.20  Aligned_cols=101  Identities=16%  Similarity=0.226  Sum_probs=90.0

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCChhHHHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHGMRSLQVA  263 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g~rs~~aa  263 (295)
                      ...++++++.+++++    ++..|||||+..||..||||||+|+|...+...    ...++++++|||||.+|.||..++
T Consensus         4 ~~~Is~~el~~~l~~----~~~~ivDvR~~~e~~~ghIpga~~~~~~~~~~~----~~~~~~~~~vv~~c~~g~rs~~~a   75 (157)
T d1yt8a3           4 ADTIDPTTLADWLGE----PGTRVLDFTASANYAKRHIPGAAWVLRSQLKQA----LERLGTAERYVLTCGSSLLARFAV   75 (157)
T ss_dssp             CCEECHHHHHHHTTS----TTEEEEECSCHHHHHHCBCTTCEECCGGGHHHH----HHHHCCCSEEEEECSSSHHHHHHH
T ss_pred             CCEECHHHHHHHHhC----CCeEEEEeCCHHHHhhcccccceeccccccccc----ccccccCcceeeccCCcchHHHHH
Confidence            346889999999976    568999999999999999999999999876432    344678999999999999999999


Q ss_pred             HHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          264 QWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       264 ~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ..|...||++|++|.||+.+|...|+|+.
T Consensus        76 ~~l~~~G~~~v~~L~GG~~~W~~aGlp~~  104 (157)
T d1yt8a3          76 AEVQALSGKPVFLLDGGTSAWVAAGLPTE  104 (157)
T ss_dssp             HHHHHHHCSCEEEETTHHHHHHHTTCCCB
T ss_pred             HHHhcccCceEEEecCCHHHHhhCCCCCc
Confidence            99999999999999999999999998865

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.84  E-value=1.9e-21  Score=151.47  Aligned_cols=101  Identities=20%  Similarity=0.265  Sum_probs=83.2

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHh--------hcCCCCccccCccccCCCCc------cc---c--ccCCCC
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVA--------LSSLPGFQVLPLRQFGSWGP------DI---T--VKFDPQ  246 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~--------~ghIpgAinip~~~l~~~~~------~~---~--~~~~~~  246 (295)
                      .++.+++.+.+.+    ++.+|||+|++.||.        .||||||+|+|+..+.....      .+   +  ..++++
T Consensus        13 ~~s~d~l~~~l~~----~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~   88 (136)
T d1e0ca2          13 TASRDYLLGRLGA----ADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPD   88 (136)
T ss_dssp             BCCHHHHHHHTTC----TTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTT
T ss_pred             eEcHHHHHHhhCC----CCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccccccchhHHHhhhhhhcccCCC
Confidence            5788999999987    578999999999996        68999999999876532211      11   1  124789


Q ss_pred             CcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccc-cCC
Q 022540          247 KDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK-VDP  290 (295)
Q Consensus       247 ~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~-~~p  290 (295)
                      ++||+||++|.||+.++..|+.+||+||++|+|||.+|... +.|
T Consensus        89 ~~vV~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~P  133 (136)
T d1e0ca2          89 KEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTP  133 (136)
T ss_dssp             SEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCC
T ss_pred             CceEEeCCChHHHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999653 444

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=2.7e-21  Score=151.91  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=86.3

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHh------------hcCCCCccccCccccCCCCcccc-----------ccC
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVA------------LSSLPGFQVLPLRQFGSWGPDIT-----------VKF  243 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~------------~ghIpgAinip~~~l~~~~~~~~-----------~~~  243 (295)
                      ++.+++.+.+.+    +..+|||+|++.||.            .||||||+|+|+..+......+.           ..+
T Consensus        13 ~~~~ev~~~l~~----~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~gi   88 (144)
T d1rhsa2          13 KTYEQVLENLES----KRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKV   88 (144)
T ss_dssp             ECHHHHHHHHHH----CCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTC
T ss_pred             ecHHHHHHHhcC----CCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhhcccCCHHHHHHHHHHcCC
Confidence            567888888876    578999999999995            59999999999987644322111           135


Q ss_pred             CCCCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCCC
Q 022540          244 DPQKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSIP  293 (295)
Q Consensus       244 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~p  293 (295)
                      +++++||+||++|.||+.++..|+.+||++|.+|+|||.+|....+|..|
T Consensus        89 ~~~~~iI~yC~sG~~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p~~p  138 (144)
T d1rhsa2          89 DLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETW  138 (144)
T ss_dssp             CTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGE
T ss_pred             CCCCCEEEEecccchHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCCCCC
Confidence            78899999999999999999999999999999999999999987777654

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=2.2e-21  Score=150.46  Aligned_cols=105  Identities=14%  Similarity=0.197  Sum_probs=88.2

Q ss_pred             cccccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCccccccCCCCCcEEEEeCCC-hhHHHH
Q 022540          184 LQDIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDITVKFDPQKDTYVMCHHG-MRSLQV  262 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~~~~~~~~~ivv~C~~g-~rs~~a  262 (295)
                      ...++++++.+++++    ++..|||||++.||+.||||||+|||+..|....+.+...+++++++||||..| .|+..+
T Consensus         7 v~~I~~~el~~~~~~----~~v~iIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~iv~~c~~~~~~~~~a   82 (132)
T d1t3ka_           7 ISYITSTQLLPLHRR----PNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQNVKDKDTLVFHSALSQVRGPTC   82 (132)
T ss_dssp             SEEECTTTTTTCCCC----TTEEEEEESCSHHHHSSCCCSSEEECCSSSSTTHHHHHHTCCSCCEEEESSSCCSSSHHHH
T ss_pred             CCEECHHHHHHHHhC----CCeEEEEccCHHHHHhccCcccceeeeecccccccccccccccccceEEEeccccccchHH
Confidence            456888999999887    568999999999999999999999999988777666666677889999999855 466666


Q ss_pred             HHHHH--------HcCCCceEEccccHhhcccccCCCC
Q 022540          263 AQWLQ--------TQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       263 a~~L~--------~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      +..|.        ..||+||++|+||+.+|..++.|..
T Consensus        83 a~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~  120 (132)
T d1t3ka_          83 ARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVC  120 (132)
T ss_dssp             HHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcc
Confidence            65554        3699999999999999999999865

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.78  E-value=2e-19  Score=139.50  Aligned_cols=103  Identities=19%  Similarity=0.279  Sum_probs=82.2

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcccc---------------ccCCCCCcEE
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPDIT---------------VKFDPQKDTY  250 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~~~---------------~~~~~~~~iv  250 (295)
                      -++++++.++|.+    ++++|||+|++.+|..||||||+|+|+..+........               .....+..++
T Consensus        10 lIs~~el~~~l~~----~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   85 (135)
T d1e0ca1          10 VIEPADLQARLSA----PELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYV   85 (135)
T ss_dssp             EECHHHHHTTTTC----TTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEE
T ss_pred             EeeHHHHHHHhcC----CCeEEEECCCHHHHhcccCccccccchhhhhhcccccchhhcchhhhhhhhcccccccccccc
Confidence            3689999999986    57899999999999999999999999977643221100               0113456677


Q ss_pred             EEeC-CChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          251 VMCH-HGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       251 v~C~-~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      +||. ++.++..++..|+..||+||++|+||+.+|..++.|+.
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~  128 (135)
T d1e0ca1          86 VYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLS  128 (135)
T ss_dssp             EECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCB
T ss_pred             ccccccCccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCC
Confidence            7765 56778899999999999999999999999999998765

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=3.6e-19  Score=140.25  Aligned_cols=103  Identities=18%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             cccchhhhhhccCCCccccceeecCc----------chhHHhhcCCCCccccCccccCCCCccc-------------c--
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVR----------EPEEVALSSLPGFQVLPLRQFGSWGPDI-------------T--  240 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR----------~~~e~~~ghIpgAinip~~~l~~~~~~~-------------~--  240 (295)
                      -++++.+.+.|.+    ++.+|||+|          ...+|..||||||+|+|+..+.......             +  
T Consensus         4 lVs~~wL~~~L~~----~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~   79 (147)
T d1urha1           4 FVGADWLAEHIDD----PEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRE   79 (147)
T ss_dssp             EECHHHHHTTTTC----TTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHH
T ss_pred             cCcHHHHHHHhCC----CCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccccccccCCCHHHHHHHHHH
Confidence            3778899999987    678999999          3468999999999999987654322111             0  


Q ss_pred             ccCCCCCcEEEEeCCC-hhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          241 VKFDPQKDTYVMCHHG-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       241 ~~~~~~~~ivv~C~~g-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ..+.++++||+||.++ ..|+.++..|+.+||++|++|+||+.+|..++.|+.
T Consensus        80 ~Gi~~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~  132 (147)
T d1urha1          80 LGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLE  132 (147)
T ss_dssp             TTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCB
T ss_pred             hCcCCCCeEEEEeCCCcccchhHHHHHHhhcccceEEeCChHHHHHHcCCCcc
Confidence            1346889999999754 567889999999999999999999999999988764

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=2.5e-19  Score=139.97  Aligned_cols=89  Identities=24%  Similarity=0.323  Sum_probs=73.2

Q ss_pred             ccceeecCcchhHHh----------------hcCCCCccccCccccCCCCcccc-----------ccCCCCCcEEEEeCC
Q 022540          203 KEAQLIDVREPEEVA----------------LSSLPGFQVLPLRQFGSWGPDIT-----------VKFDPQKDTYVMCHH  255 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~----------------~ghIpgAinip~~~l~~~~~~~~-----------~~~~~~~~ivv~C~~  255 (295)
                      .+.+|||+|++.||.                .||||||+|+|+..+......+.           ..++++++||+||++
T Consensus        19 ~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~~~~~~~~~~~~~~~~~gi~~d~~vV~yC~~   98 (141)
T d1uara2          19 GKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRI   98 (141)
T ss_dssp             TSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGTCCTTSEEEEECSS
T ss_pred             CCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccccccccHHHHHHHHHHhCCCCCCeEEEEecC
Confidence            456899999999996                69999999999987654322211           135789999999999


Q ss_pred             ChhHHHHHHHHHH-cCCCceEEccccHhhccc-ccCCC
Q 022540          256 GMRSLQVAQWLQT-QGFRRVFNVSGGIHAYAT-KVDPS  291 (295)
Q Consensus       256 g~rs~~aa~~L~~-~G~~~v~~l~GG~~~W~~-~~~p~  291 (295)
                      |.+|+.++..|.. +||++|++|+|||.+|.. .+.|.
T Consensus        99 G~~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~Pv  136 (141)
T d1uara2          99 AERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPI  136 (141)
T ss_dssp             HHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCC
T ss_pred             cchHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCc
Confidence            9999999999986 799999999999999966 46664

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=4.1e-19  Score=135.12  Aligned_cols=94  Identities=19%  Similarity=0.237  Sum_probs=77.1

Q ss_pred             ccchhhhhhccCCCccccceeecCcchhHHh-----------hcCCCCccccCccccCCCCcc-----c-----cccCCC
Q 022540          187 IQPDELHKKMQDPNFHKEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGPD-----I-----TVKFDP  245 (295)
Q Consensus       187 is~~el~~~L~~~~~~~~~~iiDvR~~~e~~-----------~ghIpgAinip~~~l~~~~~~-----~-----~~~~~~  245 (295)
                      ++.+++...+++    ..++|||+|++.+|.           .||||||+|+|+..+......     +     ...+++
T Consensus         6 ~~~~ev~~~~~~----~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (120)
T d1urha2           6 VKVTDVLLASHE----NTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSY   81 (120)
T ss_dssp             CCHHHHHHHHHH----TCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCS
T ss_pred             ccHHHHHHHhhC----CCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccccccCCHHHhhhhhhhcccCc
Confidence            567778777776    567999999999995           699999999999765432211     0     113578


Q ss_pred             CCcEEEEeCCChhHHHHHHHHHHcCCCceEEccccHhhc
Q 022540          246 QKDTYVMCHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAY  284 (295)
Q Consensus       246 ~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W  284 (295)
                      +++||+||++|.||+.++..|+.+||++|++|+|||.+|
T Consensus        82 ~~~ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          82 DKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             SSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             cCceEEEccchhHHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            899999999999999999999999999999999999999

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=9.9e-19  Score=137.98  Aligned_cols=107  Identities=12%  Similarity=0.171  Sum_probs=85.3

Q ss_pred             cccchhhhhhccCCCccccceeecCc--------chhHHhhcCCCCccccCccccCCCCcc-------------cc--cc
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVR--------EPEEVALSSLPGFQVLPLRQFGSWGPD-------------IT--VK  242 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR--------~~~e~~~ghIpgAinip~~~l~~~~~~-------------~~--~~  242 (295)
                      -++++++.+.|++.+..++..|||+|        ...+|..||||||+|+|++.+......             .+  ..
T Consensus         9 lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G   88 (149)
T d1rhsa1           9 LVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSLG   88 (149)
T ss_dssp             EECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHHTT
T ss_pred             ccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccccchhhhhhhhHHHHHHHhhhh
Confidence            37889999999765433578999998        457899999999999998765432110             01  12


Q ss_pred             CCCCCcEEEEeCC---ChhHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          243 FDPQKDTYVMCHH---GMRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       243 ~~~~~~ivv~C~~---g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      +.++++|||||+.   +..++.++..|+.+||++|++|+||+.+|.+++.|+.
T Consensus        89 i~~~~~vVvy~~~~~~~~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~  141 (149)
T d1rhsa1          89 ISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVT  141 (149)
T ss_dssp             CCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCB
T ss_pred             ccCCceeEEeeccCCcchhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCccc
Confidence            4678999999974   4578899999999999999999999999999998864

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=1.6e-19  Score=141.67  Aligned_cols=103  Identities=12%  Similarity=0.137  Sum_probs=81.6

Q ss_pred             cccchhhhhhccCCCccccceeecCcc-hhHHhhcCCCCccccCccccCCC-C----------ccccc--cCCCCCcEEE
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVRE-PEEVALSSLPGFQVLPLRQFGSW-G----------PDITV--KFDPQKDTYV  251 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~-~~e~~~ghIpgAinip~~~l~~~-~----------~~~~~--~~~~~~~ivv  251 (295)
                      -++++++.+.|.+    +++.|||+|+ ..+|..||||||+|+|+...... .          ..++.  .+.++++||+
T Consensus         8 lVs~~~l~~~l~~----~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVv   83 (143)
T d1uara1           8 LVSTDWVQEHLED----PKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVL   83 (143)
T ss_dssp             EECHHHHHTTTTC----TTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEE
T ss_pred             cCcHHHHHHHhCC----CCeEEEECCCCHHHHhcCCCCCcccccccccccccccccchhhHHHHHHhhhhccCCCceEEE
Confidence            4788999999976    5789999995 67899999999999987532110 0          11111  2378899999


Q ss_pred             EeCCCh-hHHHHHHHHHHcCCCceEEccccHhhcccccCCCC
Q 022540          252 MCHHGM-RSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPSI  292 (295)
Q Consensus       252 ~C~~g~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~~  292 (295)
                      ||.+|. .|..++..|+.+||++|++|+||+.+|..++.|..
T Consensus        84 y~~~~~~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~  125 (143)
T d1uara1          84 YGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLT  125 (143)
T ss_dssp             ECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCB
T ss_pred             ecCCCcccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCcc
Confidence            998765 56778888999999999999999999999888764

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.72  E-value=2.1e-18  Score=134.51  Aligned_cols=85  Identities=15%  Similarity=0.197  Sum_probs=68.5

Q ss_pred             ccceeecCcchhHHh-----------hcCCCCccccCccccCCCCc---------cc----------cccCCCCCcEEEE
Q 022540          203 KEAQLIDVREPEEVA-----------LSSLPGFQVLPLRQFGSWGP---------DI----------TVKFDPQKDTYVM  252 (295)
Q Consensus       203 ~~~~iiDvR~~~e~~-----------~ghIpgAinip~~~l~~~~~---------~~----------~~~~~~~~~ivv~  252 (295)
                      ++.+|||+|++.||.           .||||||+|+|+..+.....         .+          ...+.++++||+|
T Consensus        11 p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~y   90 (139)
T d1okga2          11 PQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFVFS   90 (139)
T ss_dssp             TTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSEEE
T ss_pred             CCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCeEEEE
Confidence            567899999999997           79999999999865422110         00          0123567899999


Q ss_pred             eCCChhHHHHHHHHHHcCCCceEEccccHhhcccc
Q 022540          253 CHHGMRSLQVAQWLQTQGFRRVFNVSGGIHAYATK  287 (295)
Q Consensus       253 C~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~  287 (295)
                      |++|.+|+.++..|+.+||++|++++|||.+|.+.
T Consensus        91 C~sG~~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~  125 (139)
T d1okga2          91 CGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGL  125 (139)
T ss_dssp             CSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhCCCCccCCCCCHHHHhCC
Confidence            99999999999999999999999999999999764

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5.1e-18  Score=135.56  Aligned_cols=104  Identities=18%  Similarity=0.286  Sum_probs=77.8

Q ss_pred             cccccchhhhhhccCC--CccccceeecCcchhHHhhcCCCCccccCccccCC-C-Cc-cccccCCCCCcEEEEeC-CCh
Q 022540          184 LQDIQPDELHKKMQDP--NFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGS-W-GP-DITVKFDPQKDTYVMCH-HGM  257 (295)
Q Consensus       184 ~~~is~~el~~~L~~~--~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~-~-~~-~~~~~~~~~~~ivv~C~-~g~  257 (295)
                      ...++++++.++|++.  ...++++|||||++.||..||||||+|+|..+... . .. .......+...||+||. +|.
T Consensus        22 ~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~~~~~~~l~~~~~~~~~~~~~~vV~yc~~s~~  101 (161)
T d1c25a_          22 LKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSE  101 (161)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHTTTSCCCCCTTSEEEEEEECSSSSS
T ss_pred             CCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcHHHHHHHHhhhhhhhhhccCCeEEEEeccccc
Confidence            4458899999988752  11146799999999999999999999999754211 0 00 11111234556899997 788


Q ss_pred             hHHHHHHHHHHc----------CCCceEEccccHhhcccc
Q 022540          258 RSLQVAQWLQTQ----------GFRRVFNVSGGIHAYATK  287 (295)
Q Consensus       258 rs~~aa~~L~~~----------G~~~v~~l~GG~~~W~~~  287 (295)
                      ||..++..|+..          ||++|++|+||+.+|..+
T Consensus       102 rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~  141 (161)
T d1c25a_         102 RGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK  141 (161)
T ss_dssp             HHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHH
Confidence            999999988754          999999999999999765

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.7e-17  Score=130.94  Aligned_cols=104  Identities=15%  Similarity=0.269  Sum_probs=78.5

Q ss_pred             cccccchhhhhhccCCC--ccccceeecCcchhHHhhcCCCCccccCccccCCC----CccccccCCCCCcEEEEeC-CC
Q 022540          184 LQDIQPDELHKKMQDPN--FHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSW----GPDITVKFDPQKDTYVMCH-HG  256 (295)
Q Consensus       184 ~~~is~~el~~~L~~~~--~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~----~~~~~~~~~~~~~ivv~C~-~g  256 (295)
                      ...++++++.++|.+..  ..++++|||+|++.||..|||+||+|+|...+...    ........++..+||+||. ++
T Consensus        22 ~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~~~~~~~~~~~~~~~~~~~~~~~vV~yc~~s~  101 (174)
T d1ymka1          22 LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLDKRVILIFHCEFSS  101 (174)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHTTTCCC----CEEEEEEECSSSS
T ss_pred             CcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCchHHHHHHHHHhhhhhhhhccCceEEEEeCCCC
Confidence            55699999999997631  11467999999999999999999999998754221    0111112245567999997 56


Q ss_pred             hhHHHHHHHHHH----------cCCCceEEccccHhhcccc
Q 022540          257 MRSLQVAQWLQT----------QGFRRVFNVSGGIHAYATK  287 (295)
Q Consensus       257 ~rs~~aa~~L~~----------~G~~~v~~l~GG~~~W~~~  287 (295)
                      .|+..++..|+.          .||++|++|+||+.+|..+
T Consensus       102 ~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~  142 (174)
T d1ymka1         102 ERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ  142 (174)
T ss_dssp             SHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             chHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHh
Confidence            789999998875          4999999999999999754

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.59  E-value=7.8e-16  Score=121.42  Aligned_cols=99  Identities=15%  Similarity=0.137  Sum_probs=75.8

Q ss_pred             cccchhhhhhccCCCccccceeecCc--------chhHHhhcCCCCccccCccccCCC-C---------cc------cc-
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVR--------EPEEVALSSLPGFQVLPLRQFGSW-G---------PD------IT-  240 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR--------~~~e~~~ghIpgAinip~~~l~~~-~---------~~------~~-  240 (295)
                      -++++++.+.+.      +..|||+|        ...+|..||||||++++++..... .         +.      .+ 
T Consensus         9 lvs~~~L~~~l~------d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~l~   82 (156)
T d1okga1           9 FLDPSEVADHLA------EYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCM   82 (156)
T ss_dssp             EECHHHHTTCGG------GSEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHH
T ss_pred             EeCHHHHHHhcC------CCEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCCCCCccccCCHHHHHHHHH
Confidence            377888888775      46899999        467899999999999987542211 0         00      01 


Q ss_pred             -ccCCCCCcEEEEeCC-C-hhHHHHHHHHHHcCCCceEEccccHhhcccccCCC
Q 022540          241 -VKFDPQKDTYVMCHH-G-MRSLQVAQWLQTQGFRRVFNVSGGIHAYATKVDPS  291 (295)
Q Consensus       241 -~~~~~~~~ivv~C~~-g-~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~~~p~  291 (295)
                       ..++++++||+||+. | ..+++++..|+.+|+ +|++|+||+.+|..++.|.
T Consensus        83 ~lGI~~~~~VVvYd~~~g~~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~pv  135 (156)
T d1okga1          83 ANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEM  135 (156)
T ss_dssp             HTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCE
T ss_pred             hccccCCceEEEEeCCCCchHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCCC
Confidence             124789999999964 3 468899999999997 7999999999999988764

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-16  Score=121.20  Aligned_cols=100  Identities=16%  Similarity=0.066  Sum_probs=72.5

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccCCCCcc--c-----------cccCCCCCcEEEE
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFGSWGPD--I-----------TVKFDPQKDTYVM  252 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~~~~~~--~-----------~~~~~~~~~ivv~  252 (295)
                      .++++++.++|++.+  ...+|||+|+..+|..||||||+|||...+......  +           .......++||+|
T Consensus         2 ~Is~~eL~~~l~~~~--~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~iV~y   79 (135)
T d2gwfa1           2 AITAKELYTMMTDKN--ISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLL   79 (135)
T ss_dssp             EECHHHHHHHHHSTT--SCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEEE
T ss_pred             eECHHHHHHHHhcCC--CCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhhhhhHHHHHHHhccCCCCeEEEE
Confidence            378899999998743  568999999999999999999999999877542110  0           1122466789999


Q ss_pred             eCCChh-H---HH----HHHHHH-----HcCCCceEEccccHhhcccc
Q 022540          253 CHHGMR-S---LQ----VAQWLQ-----TQGFRRVFNVSGGIHAYATK  287 (295)
Q Consensus       253 C~~g~r-s---~~----aa~~L~-----~~G~~~v~~l~GG~~~W~~~  287 (295)
                      |..+.. +   ..    ....|.     ..|..+|++|+||+.+|...
T Consensus        80 d~~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~  127 (135)
T d2gwfa1          80 DWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  127 (135)
T ss_dssp             CSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             eCCCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHh
Confidence            986542 2   11    222332     24678899999999999876

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.8e-14  Score=111.82  Aligned_cols=99  Identities=13%  Similarity=0.106  Sum_probs=68.9

Q ss_pred             cccchhhhhhccCCCccccceeecCcchhHHhhcCCCCccccCccccC-----CC---Ccccc---------ccCCCCCc
Q 022540          186 DIQPDELHKKMQDPNFHKEAQLIDVREPEEVALSSLPGFQVLPLRQFG-----SW---GPDIT---------VKFDPQKD  248 (295)
Q Consensus       186 ~is~~el~~~L~~~~~~~~~~iiDvR~~~e~~~ghIpgAinip~~~l~-----~~---~~~~~---------~~~~~~~~  248 (295)
                      .++++++.+.|+..+  ++.+|||+|++.||..||||||+|+|+..+.     ..   ....+         .....++.
T Consensus        17 ~~s~e~L~~~l~~~~--~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (154)
T d1hzma_          17 SKTVAWLNEQLELGN--ERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCGTDT   94 (154)
T ss_dssp             BSCCCCHHHHHHHCS--SSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTSHHHHHHHHSTTSSC
T ss_pred             ccCHHHHHHHHhcCC--CCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhhccCCcccccccCCcHHHHHHHhhcCCCCe
Confidence            377888988886432  5789999999999999999999999975431     00   00111         11245678


Q ss_pred             EEEEeCCCh----------hHHHHHHHHHHcCCCceEEccccHhhcccc
Q 022540          249 TYVMCHHGM----------RSLQVAQWLQTQGFRRVFNVSGGIHAYATK  287 (295)
Q Consensus       249 ivv~C~~g~----------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~  287 (295)
                      ||+||..|.          +...+...|...|+ +|++|+||+.+|...
T Consensus        95 VVvYd~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~v~iL~GG~~~w~~~  142 (154)
T d1hzma_          95 VVLYDESSSDWNENTGGESLLGLLLKKLKDEGC-RAFYLEGGFSKFQAE  142 (154)
T ss_dssp             EEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTC-CCEECCCCHHHHHHH
T ss_pred             EEEEcCCCchhhhhHHHHHHHHHHHHHHHhcCC-eEEEEeCcHHHHHHH
Confidence            999998643          22333444555554 799999999999765

>d1pina2 d.26.1.1 (A:45-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=3e-07  Score=68.18  Aligned_cols=76  Identities=17%  Similarity=0.031  Sum_probs=62.0

Q ss_pred             ccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEee
Q 022540           18 QSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQH   94 (295)
Q Consensus        18 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~h   94 (295)
                      +.....++++++.+.++...|+.+ ++||+++ ++.++|.+||+..+.++++|+.++|.+++++++ +...+..||+-.
T Consensus        39 ~ea~~~~~~i~~~i~~g~~~F~~lA~~~Sd~~-s~~~gG~lg~~~~~~l~~~f~~~~~~l~~GeiS~pi~t~~G~HIik  116 (119)
T d1pina2          39 EEALELINGYIQKIKSGEEDFESLASQFSDCS-SAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIIL  116 (119)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCHHHHHHHHCSSG-GGGGTTEEEEECTTSSCHHHHHHHHHCCTTCBCCCEECSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHcChhhHHHHHHHcCCCc-cccccccccccccchHHHHHHHHHhcCCCCCcCCcEEeCCcEEEEE
Confidence            334456777888888888899999 9999886 677999999999999999999999999887764 456666776643

>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=9.9e-07  Score=64.12  Aligned_cols=76  Identities=12%  Similarity=-0.073  Sum_probs=64.1

Q ss_pred             cccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCC-CCCCCCccEEEeeEE
Q 022540           21 IPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGS-SPGGGDREILVQHLL   96 (295)
Q Consensus        21 ~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~hIl   96 (295)
                      ...++.+...+.++...|..+ .+||+|+.+..++|++||+....+.++|+.++|+++.+++ .+...+..||+-++.
T Consensus        26 ~~~~~~i~~~l~~~~~~F~~lA~~~S~d~~~~~~gG~lgw~~~~~l~~~~~~~~~~l~~GeiS~pi~t~~G~hIikl~  103 (108)
T d1m5ya3          26 RVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELL  103 (108)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHCCCTTTGGGTTEEEEECGGGSCHHHHHHHHTCCTTCBCCCEECSSCEEEEEEE
T ss_pred             HHHHHHHHHHHHcCcccHHHHHHHhCcCCccccccccccccccccccHHHHHHHHhCCCCCCCccEEeCCEEEEEEEE
Confidence            344566677777887899999 9999999999999999999999999999999999988775 456777788877664

>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin
species: Human (Homo sapiens), hpar14 [TaxId: 9606]

Probab=97.80  E-value=4.3e-06  Score=59.26  Aligned_cols=69  Identities=9%  Similarity=-0.037  Sum_probs=52.5

Q ss_pred             ccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCCC-------CCCCccEEEeeE
Q 022540           24 LNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSSP-------GGGDREILVQHL   95 (295)
Q Consensus        24 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-------~~~~~~~~~~hI   95 (295)
                      .+++.+++.. ..+|+.| ++||+++  +.++|.|||+..+.++++|+.++|+++.+++++       .++...||+-++
T Consensus        16 a~~i~~~i~~-g~~F~~lA~~~S~d~--~~~~G~lG~~~~~~l~~ef~~a~f~l~~g~is~~~~~~~pi~T~~G~HIikv   92 (96)
T d1eq3a_          16 IMEAMEKLKS-GMRFNEVAAQYSEDK--ARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMV   92 (96)
T ss_dssp             HHHHHHHHTT-TTSHHHHHHHHCCCT--TTCCSEEEEESSCCSSSHHHHHHHHCCSCCSSTTTBCSSCEEETTEEEEEEE
T ss_pred             HHHHHHHHHC-CCCHHHHHHHhCcCc--cccccccceechHHhhHHHHHHHHhCCCCcCccccccCCCEecCCeEEEEEE
Confidence            4455566644 4589999 9999885  567889999999999999999999999887653       344445666444

>d1j6ya_ d.26.1.1 (A:) Mitotic rotamase PIN1, domain 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Mitotic rotamase PIN1, domain 2
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.72  E-value=6.8e-07  Score=66.30  Aligned_cols=74  Identities=8%  Similarity=-0.027  Sum_probs=59.6

Q ss_pred             cccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEe
Q 022540           19 SLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQ   93 (295)
Q Consensus        19 ~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~   93 (295)
                      .....++.++..+..+..+|+.+ ++||++ .++.+||.|||+....++++|+.++|.+++++++ |...+..||+-
T Consensus        41 ~a~~~~~~i~~~i~~g~~~F~~lA~~~Sd~-~s~~~GG~lGw~~~~~l~~~f~~~~~~l~~G~is~pi~t~~G~HIi  116 (120)
T d1j6ya_          41 AAVEQLKSIREDIVSGKANFEEVATRVSDC-SSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHII  116 (120)
T ss_dssp             HHHHHHHHHHHHHHSSCCCCHHHHHHSSCH-HHHHTCSEEEECSSSSSCTHHHHHHHHCCSSSCCSCEEETTEEECC
T ss_pred             HHHHHHHHHHHHHHcCcccHHHHHHHhCCC-cccccccccccchhhhcChHHHHHHHcCCCCCcCCCEEeCCeeEEE
Confidence            34455667777777787899999 999955 4678899999999999999999999999887764 55666677653

>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Parvulin 10 (rotamase C)
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=2.7e-05  Score=54.49  Aligned_cols=68  Identities=6%  Similarity=-0.083  Sum_probs=54.3

Q ss_pred             cCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCccEEEeeEE
Q 022540           27 SSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDREILVQHLL   96 (295)
Q Consensus        27 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~hIl   96 (295)
                      +.+.+.. ..+|..+ +.||+++ ++.++|.+||+..+.++++|+.++|.+++++++ |.+.+..||+-.++
T Consensus        20 i~~~l~~-g~~F~~lA~~~S~d~-s~~~gG~lG~~~~~~l~~~f~~~~~~l~~G~vs~pi~t~~G~HIikv~   89 (92)
T d1jnsa_          20 LLEQIKN-GADFGKLAKKHSICP-SGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVL   89 (92)
T ss_dssp             HHHHHHH-TCCHHHHHHHHHCST-TTTTGGGCCEEETTSSCHHHHHHHHHSCTTCCEEEEEETTEEEEEEEE
T ss_pred             HHHHHHC-CCCHHHHHHHhCCCc-ccchhhhhceeeHhhhhhHHHHHHHhCCCCCcCCCEEeCCeEEEEEEE
Confidence            4444544 4589999 9999996 567899999999999999999999999888764 56677778775553

>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Porin chaperone SurA, PPIase domains
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=2.2e-05  Score=56.20  Aligned_cols=82  Identities=6%  Similarity=-0.125  Sum_probs=64.9

Q ss_pred             hhhhccccccccccccCccchhccCCchhh-hhhccccCCCCCCCcceeEecccccChHhhhccccCCCCCC-CCCCCcc
Q 022540           12 VLCAITQSLIPTLNLSSSSSLSIFQKPASF-ASFYKSLNPASNSNSFHIHIISRSFTSPKAASFSSGTEGSS-PGGGDRE   89 (295)
Q Consensus        12 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~   89 (295)
                      .+++.++........++..+..+ ..|+.+ ..||+++ ++.++|.+||+....+.++|+.+.+.+++++++ +...+..
T Consensus        16 ~~~~~~~~~~~~a~~~~~~l~~g-~~F~~la~~~S~~~-~~~~gG~lg~~~~~~l~~~~~~~i~~l~~G~is~pi~t~~G   93 (103)
T d2pv2a1          16 PTSDQVNEAESQARAIVDQARNG-ADFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVG   93 (103)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHCCST-TGGGTTEEEEEEGGGSBHHHHHHHHTCCTTCEEEEEEETTE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcC-CCHHHHhccccccc-ccccccccccccccccchhhhhhhhhcCCCCCCCcEEECCE
Confidence            34555556666666677777554 599999 9999986 678899999999999999999999999887664 5667778


Q ss_pred             EEEeeE
Q 022540           90 ILVQHL   95 (295)
Q Consensus        90 ~~~~hI   95 (295)
                      ||+-+|
T Consensus        94 ~hIikl   99 (103)
T d2pv2a1          94 FHILKV   99 (103)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887665

>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Bacillus subtilis [TaxId: 1423]

Probab=83.45  E-value=0.39  Score=34.55  Aligned_cols=39  Identities=26%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             CCcEEEEeCC-ChhHHHHHHHHHHcCCCceEEccccHhhc
Q 022540          246 QKDTYVMCHH-GMRSLQVAQWLQTQGFRRVFNVSGGIHAY  284 (295)
Q Consensus       246 ~~~ivv~C~~-g~rs~~aa~~L~~~G~~~v~~l~GG~~~W  284 (295)
                      ++.|+|+|.+ -.||.+|..+|+..+-.++.+..+|+.++
T Consensus         1 ~K~ILFVC~gN~cRSpmAEai~~~~~~~~~~~~Sag~~~~   40 (137)
T d1jl3a_           1 NKIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIEAH   40 (137)
T ss_dssp             CEEEEEEESSSSSHHHHHHHHHHHHSCTTEEEEEEESSCC
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHHhCCCCeeecccccccc
Confidence            4679999974 46999999999998777788888888765