Citrus Sinensis ID: 022563

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
MSAIASSQNCSGQSMFRHCKTTARLIRNAKEIAPVTHLPTTPLSAVSSNVRTNIVMNNNVVDPHQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPVAIERCD
cccccccccccccHHccccccHHHHHHccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHcccEEEEEEEccccccccHHHHHHHHHHccccccccccccEEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEccEEccccccccccccccccccccccHHHHHHHcccccEEEEEcccccccccccccccccccccEEEccccEEEcccHHHHHcc
ccEEEEcccccccHHEEHHHHHHHHHccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHccEEEEEEEcccccccccHHHHHHHHHccccccccccccEEEEEEEEcccccEEEEEEccccccccccccccccccccccccccHHHccccccccEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEccEEEcccccccccccccccEEEccccEEEccHHHHHHcc
msaiassqncsgqsmfrHCKTTARLIRNakeiapvthlpttplsavssnVRTNivmnnnvvdphQLEAIFQKKRSLRSKIRKdlknmdpiqrsqedtaVQDIVLESSWFKASRNICAYIScaslrevdTSRIVSEILsnqtdegngqmrkklyvprvedknsnmrMLKISAVKDLVANSmnilepslldsdgnqcedvmqasepvdllilpglafdrsggrlgrgggYYDVFLKKYQKLAQEQKWKQPLLVALLYSLqlvdeesipvtpydvpvdalvsprgfipispvaiercd
msaiassqncsgqsmfRHCKTTARLIRNAKeiapvthlpttplsavsSNVRTNIVMNNNVVDPHQLEAIFQKKRSLRSKirkdlknmdpiqrsqedtavqDIVLESSWFKASRNICAYISCASLREVDTSRIVSEIlsnqtdegngqmrkklyvprvedknsnmRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDAlvsprgfipispvaiercd
MSAIASSQNCSGQSMFRHCKTTARLIRNAKEIAPVTHLPTTPLSAVSSNVRTNIVMNNNVVDPHQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDrsggrlgrgggYYDVFLKKYQKLAQEQKWKQPllvallyslqlVDEESIPVTPYDVPVDALVSPRGFIPISPVAIERCD
***************FRHCKTTARLIRNAKEIAPVTHLPTTPLSAVSSNVRTNIVMNNNVVDPHQLEAIF***************************AVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEIL*****************************LKISAVKDLVANSMNILE*************VMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPVAI****
*************SMFRHCKTTARLIRNAKEIAPVTHLPT**********************************SLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPVAI*R**
**************MFRHCKTTARLIRNAKEIAPVTHLPTTPLSAVSSNVRTNIVMNNNVVDPHQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPVAIERCD
***I*SSQNCSGQSMFRHCKTTARLIRNAKEIAPVTHLPTTPLSAVS**********************FQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDE**GQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPVAI*RCD
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MSAIASSQNCSGQSMFRHCKTTARLIRNAKEIAPVTHLPTTPLSAVSSNVRTNIVMNNNVVDPHQLEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPVAIERCD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query295 2.2.26 [Sep-21-2011]
P49914203 5-formyltetrahydrofolate yes no 0.640 0.931 0.294 1e-17
P80405201 5-formyltetrahydrofolate yes no 0.623 0.915 0.306 2e-17
Q9D110203 5-formyltetrahydrofolate yes no 0.623 0.906 0.282 4e-17
Q9XWE6206 Probable 5-formyltetrahyd yes no 0.650 0.932 0.25 5e-14
Q9P7W2204 Probable 5-formyltetrahyd yes no 0.661 0.955 0.277 2e-12
P44905187 Uncharacterized protein H yes no 0.613 0.967 0.287 3e-12
Q8K9E3199 Uncharacterized protein B yes no 0.620 0.919 0.246 3e-11
P0AC28182 Uncharacterized protein Y N/A no 0.481 0.780 0.3 1e-10
P0AC29182 Uncharacterized protein Y N/A no 0.481 0.780 0.3 1e-10
P40099211 5-formyltetrahydrofolate yes no 0.630 0.881 0.265 2e-10
>sp|P49914|MTHFS_HUMAN 5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1 SV=2 Back     alignment and function desciption
 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 116/214 (54%), Gaps = 25/214 (11%)

Query: 68  AIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREV 127
           A+   KRSLR ++++ L+ M   +R ++   +   V+  S ++ S+ I  ++S     E+
Sbjct: 5   AVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EI 62

Query: 128 DTSRIVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKD---LVANSMNILE 184
           +T  I+ +I          Q  K  ++PR   ++++M M++I + ++   L   S NI +
Sbjct: 63  ETEEIIKDIF---------QRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQ 113

Query: 185 PSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQK 244
           P     +G+  E+ + ++  +DL+ +PGL FD+ G RLGRG GYYD +LK   +  Q Q+
Sbjct: 114 PG----EGDVREEAL-STGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLK---RCLQHQE 165

Query: 245 WKQPLLVALLYSLQLVDEESIPVTPYDVPVDALV 278
            K P  +AL +  Q+  +  +PV   D+ VD ++
Sbjct: 166 VK-PYTLALAFKEQICLQ--VPVNENDMKVDEVL 196
Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 3EC: .EC: 2
>sp|P80405|MTHFS_RABIT 5-formyltetrahydrofolate cyclo-ligase OS=Oryctolagus cuniculus GN=MTHFS PE=1 SV=1 Back     alignment and function description
>sp|Q9D110|MTHFS_MOUSE 5-formyltetrahydrofolate cyclo-ligase OS=Mus musculus GN=Mthfs PE=2 SV=2 Back     alignment and function description
>sp|Q9XWE6|MTHFS_CAEEL Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis elegans GN=Y106G6E.4 PE=3 SV=1 Back     alignment and function description
>sp|Q9P7W2|FTHC_SCHPO Probable 5-formyltetrahydrofolate cyclo-ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.08c PE=3 SV=1 Back     alignment and function description
>sp|P44905|Y858_HAEIN Uncharacterized protein HI_0858 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0858 PE=1 SV=1 Back     alignment and function description
>sp|Q8K9E3|Y396_BUCAP Uncharacterized protein BUsg_396 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=BUsg_396 PE=3 SV=1 Back     alignment and function description
>sp|P0AC28|YGFA_ECOLI Uncharacterized protein YgfA OS=Escherichia coli (strain K12) GN=ygfA PE=1 SV=1 Back     alignment and function description
>sp|P0AC29|YGFA_ECO57 Uncharacterized protein YgfA OS=Escherichia coli O157:H7 GN=ygfA PE=3 SV=1 Back     alignment and function description
>sp|P40099|FTHC_YEAST 5-formyltetrahydrofolate cyclo-ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAU1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
359473400294 PREDICTED: LOW QUALITY PROTEIN: probable 0.925 0.928 0.592 1e-85
255540841292 5-formyltetrahydrofolate cyclo-ligase, p 0.884 0.893 0.586 4e-84
359491756273 PREDICTED: 5-formyltetrahydrofolate cycl 0.816 0.882 0.650 2e-83
297734059242 unnamed protein product [Vitis vinifera] 0.779 0.950 0.678 1e-82
350535903273 5-formyltetrahydrofolate cycloligase [So 0.837 0.904 0.607 9e-80
224121584276 5-formyltetrahydrofolate cyclo-ligase [P 0.772 0.826 0.649 1e-77
449477615337 PREDICTED: 5-formyltetrahydrofolate cycl 0.908 0.795 0.553 5e-76
449441041337 PREDICTED: 5-formyltetrahydrofolate cycl 0.908 0.795 0.550 2e-75
18416944277 5-formyltetrahydrofolate cycloligase [Ar 0.925 0.985 0.562 6e-74
351720903254 uncharacterized protein LOC100527426 [Gl 0.793 0.921 0.625 2e-72
>gi|359473400|ref|XP_003631296.1| PREDICTED: LOW QUALITY PROTEIN: probable 5-formyltetrahydrofolate cyclo-ligase-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/285 (59%), Positives = 210/285 (73%), Gaps = 12/285 (4%)

Query: 20  KTTARLIRNAKEIAPVTHLPT--TPLSAVSSNVRTNIVMNNNVVDPHQLEAIFQKKRSLR 77
           K    LI   + IA  T  P+  +P    SS+   +IV  +  +D  QL+AIFQ+KR LR
Sbjct: 9   KAKGLLISPPRTIALCTSFPSPLSPTVRCSSDSPPSIVTMSRGID-SQLDAIFQQKRILR 67

Query: 78  SKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEIL 137
           SKIR++LKNMD IQRS+ED A+Q IVL + WFK+S+++ AY+SCA+L+EVDTSRI+SE L
Sbjct: 68  SKIRRELKNMDLIQRSKEDDAIQSIVLVAPWFKSSKSLFAYVSCATLQEVDTSRILSECL 127

Query: 138 SNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCED 197
            +    G  ++RKKLYV  +ED+  NMRMLKIS++ DLVA+SMNILEP+ +D DGN+ ED
Sbjct: 128 CSPAKVGYTEVRKKLYVLHLEDRKCNMRMLKISSINDLVASSMNILEPAPVDCDGNERED 187

Query: 198 VMQASEPVDLLI---------LPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQP 248
            +QAS PVDL I         LPGLAFDRSG RLG  GGYYDVFLK YQ+L +E KWKQP
Sbjct: 188 ALQASNPVDLFIIPDNFSSVCLPGLAFDRSGRRLGHIGGYYDVFLKXYQELTKEWKWKQP 247

Query: 249 LLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPVAIER 293
           LLVAL YSLQ+V E +I +TP D+PVDALVSP GFIPISP A+ER
Sbjct: 248 LLVALSYSLQVVGEGAIAITPIDIPVDALVSPSGFIPISPAALER 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540841|ref|XP_002511485.1| 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis] gi|223550600|gb|EEF52087.1| 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359491756|ref|XP_002266146.2| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734059|emb|CBI15306.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|350535903|ref|NP_001234731.1| 5-formyltetrahydrofolate cycloligase [Solanum lycopersicum] gi|22087556|gb|AAM90961.1|AF516366_1 5-formyltetrahydrofolate cycloligase [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|224121584|ref|XP_002318620.1| 5-formyltetrahydrofolate cyclo-ligase [Populus trichocarpa] gi|222859293|gb|EEE96840.1| 5-formyltetrahydrofolate cyclo-ligase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449477615|ref|XP_004155072.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449441041|ref|XP_004138292.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18416944|ref|NP_568284.1| 5-formyltetrahydrofolate cycloligase [Arabidopsis thaliana] gi|22087553|gb|AAM90960.1|AF516365_1 5-formyltetrahydrofolate cycloligase [Arabidopsis thaliana] gi|21536640|gb|AAM60972.1| 5-formyltetrahydrofolate cyclo-ligase-like protein [Arabidopsis thaliana] gi|87116638|gb|ABD19683.1| At5g13050 [Arabidopsis thaliana] gi|332004461|gb|AED91844.1| 5-formyltetrahydrofolate cycloligase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|351720903|ref|NP_001235912.1| uncharacterized protein LOC100527426 [Glycine max] gi|255632316|gb|ACU16516.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
TAIR|locus:2179827277 5-FCL "5-formyltetrahydrofolat 0.908 0.967 0.510 2.5e-65
UNIPROTKB|F1NWN8201 MTHFS "Uncharacterized protein 0.644 0.945 0.275 5.4e-15
FB|FBgn0085453201 CG34424 [Drosophila melanogast 0.633 0.930 0.261 3e-14
RGD|1306876203 Mthfs "5,10-methenyltetrahydro 0.623 0.906 0.253 2.3e-11
UNIPROTKB|P49914203 MTHFS "5-formyltetrahydrofolat 0.640 0.931 0.247 3.1e-11
UNIPROTKB|P80405201 MTHFS "5-formyltetrahydrofolat 0.640 0.940 0.257 6.8e-11
UNIPROTKB|E2RR20203 MTHFS "Uncharacterized protein 0.515 0.748 0.245 1.1e-10
MGI|MGI:1340032203 Mthfs "5, 10-methenyltetrahydr 0.623 0.906 0.239 1.9e-10
UNIPROTKB|Q1RMT3201 MTHFS "5,10-methenyltetrahydro 0.640 0.940 0.228 8.6e-09
POMBASE|SPBC1703.08c204 SPBC1703.08c "5-formyltetrahyd 0.664 0.960 0.232 1.1e-07
TAIR|locus:2179827 5-FCL "5-formyltetrahydrofolate cycloligase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 140/274 (51%), Positives = 182/274 (66%)

Query:    19 CKTTARLIRNAKEIAPVTHLPTTPLSAVSSNVRTNIVMNNNVVDPHQLEAIFQKKRSLRS 78
             C TT  L R+     P   +PT P+  +S   R  + M+    +  +L++IF++KR +RS
Sbjct:     8 CITTTALRRSPIFFFP--KIPTRPVFRLSPATRPIVAMSTTSKNQEELDSIFKQKRVVRS 65

Query:    79 KIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILS 138
              +RK LK MDP  R+Q+D A+Q  VLE+ WFK+ + +CAYISC SL EVDTS+I+SEIL 
Sbjct:    66 TVRKSLKAMDPSLRTQQDEAIQKTVLEAPWFKSCKGLCAYISCKSLNEVDTSKILSEIL- 124

Query:   139 NQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDV 198
              Q  + N Q  KKLYVP VEDKNSNMRML IS ++DLVANSMNILEP+ +D+ GN  EDV
Sbjct:   125 -QHPDSNTQ--KKLYVPWVEDKNSNMRMLHISHMEDLVANSMNILEPAPVDAQGNDREDV 181

Query:   199 MQASEPVDLLILPGLAFDXXXXXXXXXXXYYDVFLKKYQKLAQEQKWKQPXXXXXXXXXX 258
             +QA EP+DL ILPGLAFD           YYD FLK+YQ  A+E+ W+ P          
Sbjct:   182 LQADEPIDLFILPGLAFDRCGRRLGRGGGYYDTFLKRYQDRAKEKGWRYPLMVALSYSPQ 241

Query:   259 XVDEESIPVTPYDVPVDALVSPRGFIPISPVAIE 292
              +++ SIPVTP DV +DALV+P G +PI+P A E
Sbjct:   242 ILEDGSIPVTPNDVLIDALVTPSGVVPITPRATE 275
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA
GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA;IGI;IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP
UNIPROTKB|F1NWN8 MTHFS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0085453 CG34424 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1306876 Mthfs "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P49914 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P80405 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|E2RR20 MTHFS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1340032 Mthfs "5, 10-methenyltetrahydrofolate synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q1RMT3 MTHFS "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
POMBASE|SPBC1703.08c SPBC1703.08c "5-formyltetrahydrofolate cyclo-ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00000050001
SubName- Full=Chromosome chr17 scaffold_101, whole genome shotgun sequence; (287 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00011727001
SubName- Full=Chromosome undetermined scaffold_332, whole genome shotgun sequence; (300 aa)
     •• 0.925
GSVIVG00031739001
SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (351 aa)
     •  0.800
GSVIVG00024726001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (594 aa)
     •• 0.473
GSVIVG00012972001
SubName- Full=Chromosome undetermined scaffold_419, whole genome shotgun sequence; (221 aa)
      • 0.406

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
PLN02812211 PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo 1e-112
TIGR02727179 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofola 4e-39
pfam01812182 pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolat 2e-36
COG0212191 COG0212, COG0212, 5-formyltetrahydrofolate cyclo-l 7e-36
PRK10333182 PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo 3e-14
>gnl|CDD|178408 PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo-ligase Back     alignment and domain information 
 Score =  321 bits (825), Expect = e-112
 Identities = 139/219 (63%), Positives = 173/219 (78%), Gaps = 9/219 (4%)

Query: 67  EAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLRE 126
           + I ++K++LR ++R+ LK + P QR+QED A+Q  +LE  WFK+S+ +CAY+SCA LRE
Sbjct: 1   DEIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLRE 60

Query: 127 VDTSRIVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAV-KDLVANSMNILEP 185
           VDTS+I+SEIL N          K+LYVPRVEDKNSNMRML I+ +  DLVANSMNILEP
Sbjct: 61  VDTSKILSEILQNP--------DKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEP 112

Query: 186 SLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKW 245
           + +D+DGN  EDV+QA EP+DLL+LPGLAFDRSG RLGRGGGYYD FL KYQ+LA+E+ W
Sbjct: 113 TPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRGGGYYDTFLSKYQELAKEKGW 172

Query: 246 KQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFI 284
           KQPLLVAL YS Q++DE S+PV   DV VDALV+P G I
Sbjct: 173 KQPLLVALSYSPQILDEGSVPVDETDVLVDALVTPSGVI 211

Length = 211
>gnl|CDD|233985 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase Back     alignment and domain information
>gnl|CDD|216717 pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolate cyclo-ligase family Back     alignment and domain information
>gnl|CDD|223290 COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|182385 PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 295
PLN02812211 5-formyltetrahydrofolate cyclo-ligase 100.0
PRK10333182 5-formyltetrahydrofolate cyclo-ligase family prote 100.0
PF01812186 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-lig 100.0
TIGR02727181 MTHFS_bact 5,10-methenyltetrahydrofolate synthetas 100.0
KOG3093200 consensus 5-formyltetrahydrofolate cyclo-ligase [C 100.0
COG0212191 5-formyltetrahydrofolate cyclo-ligase [Coenzyme me 100.0
KOG4410 396 consensus 5-formyltetrahydrofolate cyclo-ligase [C 99.71
>PLN02812 5-formyltetrahydrofolate cyclo-ligase Back     alignment and domain information 
Probab=100.00  E-value=9.6e-54  Score=383.49  Aligned_cols=206  Identities=66%  Similarity=1.073  Sum_probs=172.0

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcC
Q 022563           68 AIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQ  147 (295)
Q Consensus        68 ~~~~~K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~  147 (295)
                      .+.+.|++||++++++|++++++++...|.+|+++|++++.|+++++|++|+|+++.+||||.+|++.+++         
T Consensus         2 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~---------   72 (211)
T PLN02812          2 EIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLREVDTSKILSEILQ---------   72 (211)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcChhhHhcCEEEEEEECCCCCCcCHHHHHHHHHH---------
Confidence            35678999999999999999999999999999999999999999999999999982239999999999999         


Q ss_pred             CC-cEEEeeeEecCCCceEEEEcCCC-cccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccC
Q 022563          148 MR-KKLYVPRVEDKNSNMRMLKISAV-KDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRG  225 (295)
Q Consensus       148 ~G-k~V~vP~v~~~~~~m~f~~~~~~-~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~G  225 (295)
                      .| |+|+||++......|.|+.|.+. ++|..|.|||+||.........+.+.+.....+|||||||||||++|+|||||
T Consensus        73 ~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG~G  152 (211)
T PLN02812         73 NPDKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRG  152 (211)
T ss_pred             cCCcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCcCC
Confidence            99 99999999765446999999986 78999999999997531111100011113467899999999999999999999


Q ss_pred             CcchhHHHHHhhhhHhhhhccCceEEEEEcCccccc--CCCCCCCCCcccCCEEEeCCceE
Q 022563          226 GGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVD--EESIPVTPYDVPVDALVSPRGFI  284 (295)
Q Consensus       226 gGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd--~~~lP~e~hDiplD~IITe~gii  284 (295)
                      ||||||||+.++......+++++.+|||||++|+++  +  ||+|+||++||+||||+|++
T Consensus       153 gGyYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~~~~--iP~e~hD~~ld~iiTe~~vi  211 (211)
T PLN02812        153 GGYYDTFLSKYQELAKEKGWKQPLLVALSYSPQILDEGS--VPVDETDVLVDALVTPSGVI  211 (211)
T ss_pred             CchHHHHHHHhhhhhccccCCCceEEEEeeheeeECCCC--CCCccccccCCEEEcCCcCC
Confidence            999999999885211001123466899999999999  8  99999999999999999974

>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional Back     alignment and domain information
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6 Back     alignment and domain information
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase Back     alignment and domain information
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism] Back     alignment and domain information
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
3hxt_A203 Structure Of Human Mthfs Length = 203 6e-11
1sou_A194 Nmr Structure Of Aquifex Aeolicus 5,10- Methenyltet 2e-05
>pdb|3HXT|A Chain A, Structure Of Human Mthfs Length = 203 Back     alignment and structure 
Iteration: 1

 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 19/171 (11%)
Query: 68  AIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREV 127
           A+   KRSLR ++++ L+ M   +R ++   +   V+  S ++ S+ I  ++S     E+
Sbjct: 5   AVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EI 62
Query: 128 DTSRIVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKD---LVANSMNILE 184
           +T  I+ +I          Q  K  ++PR   ++++M M++I + ++   L   S NI +
Sbjct: 63  ETEEIIKDIF---------QRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQ 113
Query: 185 PSLLDSDGNQCEDVMQASEPVDLLILPGLAFDXXXXXXXXXXXYYDVFLKK 235
           P     +G+  E+ + ++  +DL+ +PGL FD           YYD +LK+
Sbjct: 114 PG----EGDVREEAL-STGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKR 159
>pdb|1SOU|A Chain A, Nmr Structure Of Aquifex Aeolicus 5,10- Methenyltetrahydrofolate Synthetase: Northeast Structural Genomics Consortium Target Qr46 Length = 194 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
3hy3_A203 5-formyltetrahydrofolate cyclo-ligase; antifolate, 8e-61
1ydm_A187 Hypothetical protein YQGN; northeast structural ge 7e-60
2jcb_A200 5-formyltetrahydrofolate cyclo-ligase family PROT; 2e-59
1sou_A194 5,10-methenyltetrahydrofolate synthetase; structur 4e-50
1wkc_A184 HB8 TT1367 protein; structural genomics, riken str 2e-47
1sbq_A189 H91_ORF164, 5,10-methenyltetrahydrofolate syntheta 3e-38
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A Length = 203 Back     alignment and structure
 Score =  190 bits (486), Expect = 8e-61
 Identities = 60/221 (27%), Positives = 112/221 (50%), Gaps = 25/221 (11%)

Query: 67  EAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLRE 126
            A+   KRSLR ++++ L+ M   +R ++   +   V+  S ++ S+ I  ++S     E
Sbjct: 4   AAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--E 61

Query: 127 VDTSRIVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKD---LVANSMNIL 183
           ++T  I+ +I          Q  K  ++PR   ++++M M++I + ++   L   S NI 
Sbjct: 62  IETEEIIKDIF---------QRGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112

Query: 184 EPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQ 243
           +P     +G+  E+ +      DL+ +PGL FD+ G RLGRG GYYD +LK+  +     
Sbjct: 113 QPG----EGDVREEALSTGGL-DLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQ----H 163

Query: 244 KWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFI 284
           +  +P  +AL +  Q+  +  +PV   D+ VD ++      
Sbjct: 164 QEVKPYTLALAFKEQICLQ--VPVNENDMKVDEVLYEDSST 202
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis} Length = 187 Back     alignment and structure
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis} Length = 200 Back     alignment and structure
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6 Length = 194 Back     alignment and structure
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6 Length = 184 Back     alignment and structure
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A* Length = 189 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
3hy3_A203 5-formyltetrahydrofolate cyclo-ligase; antifolate, 100.0
1ydm_A187 Hypothetical protein YQGN; northeast structural ge 100.0
2jcb_A200 5-formyltetrahydrofolate cyclo-ligase family PROT; 100.0
1sou_A194 5,10-methenyltetrahydrofolate synthetase; structur 100.0
1wkc_A184 HB8 TT1367 protein; structural genomics, riken str 100.0
1sbq_A189 H91_ORF164, 5,10-methenyltetrahydrofolate syntheta 100.0
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A Back     alignment and structure
Probab=100.00  E-value=1.4e-55  Score=391.58  Aligned_cols=196  Identities=30%  Similarity=0.539  Sum_probs=168.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCC
Q 022563           66 LEAIFQKKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGN  145 (295)
Q Consensus        66 ~~~~~~~K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~  145 (295)
                      |+++...|++||++++++|++|+++++..+|.+|+++|++++.|+++++|++|+|++  +||||.+|++.+++       
T Consensus         3 ~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~-------   73 (203)
T 3hy3_A            3 AAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DEIETEEIIKDIFQ-------   73 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTCHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH-------
T ss_pred             hhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH-------
Confidence            667889999999999999999999999999999999999999999999999999998  59999999999999       


Q ss_pred             cCCCcEEEeeeEecCCCceEEEEcCCCc---ccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCee
Q 022563          146 GQMRKKLYVPRVEDKNSNMRMLKISAVK---DLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRL  222 (295)
Q Consensus       146 ~~~Gk~V~vP~v~~~~~~m~f~~~~~~~---~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RL  222 (295)
                        .||+|+||++...+..|.|+.|.+.+   .|.+|.|||+||....    ...+.+ ....+|||||||||||++|+||
T Consensus        74 --~gk~v~lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~----~~~~~~-~~~~~DlvlVP~vaFD~~G~RL  146 (203)
T 3hy3_A           74 --RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGD----VREEAL-STGGLDLIFMPGLGFDKHGNRL  146 (203)
T ss_dssp             --TTCEEEEEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTC----CCCBGG-GTTCCSEEEECCSEECTTCCEE
T ss_pred             --CCCEEEEEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCcc----cccccc-CccCCCEEEeCCeEECCCCcee
Confidence              99999999997655579999998864   5789999999997421    011111 3457999999999999999999


Q ss_pred             ccCCcchhHHHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeCCce
Q 022563          223 GRGGGYYDVFLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGF  283 (295)
Q Consensus       223 G~GgGYYDRfL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gi  283 (295)
                      |||||||||||+.++..    .+.++.+|||+|++|++++  ||+|+||++||+||||+|+
T Consensus       147 G~GgGyYDR~L~~~~~~----~~~~~~~igla~~~Q~~~~--lP~e~hDi~ld~iiTe~~~  201 (203)
T 3hy3_A          147 GRGKGYYDAYLKRCLQH----QEVKPYTLALAFKEQICLQ--VPVNENDMKVDEVLYEDSS  201 (203)
T ss_dssp             CSSSCHHHHHHHHHTTT----CSSCCEEEEECCGGGBCSC--CCCC--CCCCSEEECC---
T ss_pred             cCCCchHHHHHHHhhhh----cCCCCeEEEEecHHhccCC--CCCCcccccCCEEEeCCCc
Confidence            99999999999987531    1345778999999999999  9999999999999999986
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis} Back     alignment and structure
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis} Back     alignment and structure
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6 Back     alignment and structure
>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6 Back     alignment and structure
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 295
d1wkca_175 c.124.1.6 (A:) Hypothetical protein TTHA1611 {Ther 9e-23
d1soua_194 c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquif 2e-22
d1sbqa_164 c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synth 1e-19
>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]} Length = 175 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

 Score = 90.7 bits (224), Expect = 9e-23
 Identities = 49/215 (22%), Positives = 75/215 (34%), Gaps = 44/215 (20%)

Query: 72  KKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSR 131
            K  LR + R   + +D    S+   AV   +L     +  R+I  Y             
Sbjct: 2   TKAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPLP--------- 49

Query: 132 IVSEILSNQTDEGNGQMRKKLYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSD 191
                      E N     + Y  R        + L +     L      +         
Sbjct: 50  ----------HELNLLPLMEAYPARYYLPKVAGKGLTVHPFGPLAPGPFGL--------- 90

Query: 192 GNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDVFLKKYQKLAQEQKWKQPLLV 251
             +     +    +DL+++PGLAFDR G RLG G G+YD FLK+           +   V
Sbjct: 91  -LEPTTPPEDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRFLKEV----------RAATV 139

Query: 252 ALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPI 286
            ++    L     +P  P+DVPVD L +  G   +
Sbjct: 140 GVVPQALLFPA--LPRDPWDVPVDHLATEAGVEAV 172
>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]} Length = 194 Back     information, alignment and structure
>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]} Length = 164 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
d1soua_194 Hypothetical protein aq_1731 {Aquifex aeolicus [Ta 100.0
d1wkca_175 Hypothetical protein TTHA1611 {Thermus thermophilu 100.0
d1sbqa_164 5,10-methenyltetrahydrofolate synthetase homolog M 100.0
>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein aq 1731
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=3.9e-53  Score=371.46  Aligned_cols=184  Identities=30%  Similarity=0.501  Sum_probs=166.6

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCccccCCCeEEEEecCCCCCCCCcHHHHHHHHhcCCcCCCcCCCcE
Q 022563           72 KKRSLRSKIRKDLKNMDPIQRSQEDTAVQDIVLESSWFKASRNICAYISCASLREVDTSRIVSEILSNQTDEGNGQMRKK  151 (295)
Q Consensus        72 ~K~~LRk~~~~~R~~ls~~~r~~~s~~i~~~L~~~~~~~~a~~V~~Ylp~~~~~Evdt~~Li~~~l~~~~~~~~~~~Gk~  151 (295)
                      .|++||++++++|++|+++++...|..|+++|.+++.|+++++|++|+|++  +||||.+|++.+++         . |+
T Consensus         2 ~K~~lRk~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~~~~I~~Y~p~~--~Evdt~~li~~l~~---------~-k~   69 (194)
T d1soua_           2 LKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK---------E-KE   69 (194)
T ss_dssp             CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH---------H-SE
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhHHhhcCCEEEEEeccc--ccCChHHHHHHHhh---------c-cc
Confidence            389999999999999999999999999999999999999999999999998  69999999999886         4 68


Q ss_pred             EEeeeEecCCCceEEEEcCCCcccccccCCccCCCCCCCCCCccccccccCCCCcEEEEeceeEeCCCCeeccCCcchhH
Q 022563          152 LYVPRVEDKNSNMRMLKISAVKDLVANSMNILEPSLLDSDGNQCEDVMQASEPVDLLILPGLAFDRSGGRLGRGGGYYDV  231 (295)
Q Consensus       152 V~vP~v~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~~g~~~~~~~~~~~~iDLvIVPgLAFD~~G~RLG~GgGYYDR  231 (295)
                      |+||++.++  .|.|+.|.+.++|..|+|||+||....        . ..+..+|+|||||||||++|+|||||||||||
T Consensus        70 v~lP~i~~~--~m~~~~~~~~~~l~~~~~gI~EP~~~~--------~-~~~~~iDlilVP~lafD~~G~RlG~G~GyYDR  138 (194)
T d1soua_          70 LILPKVEGN--EISLYRVHSPACLGVGAFGIMEPVEGE--------R-VNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDR  138 (194)
T ss_dssp             EEEEEESSS--SEEEEEESSSCCCEECSSSCEECCSSE--------E-ECGGGCSEEEECCSCBCSSSCBCCSCCSSHHH
T ss_pred             ccccccchh--ceeeeccCCCcccccccccccCCCccc--------c-ccccccceehhhHHHHhhcCCccccCCEeHHH
Confidence            999999754  599999999999999999999996421        1 13467899999999999999999999999999


Q ss_pred             HHHHhhhhHhhhhccCceEEEEEcCcccccCCCCCCCCCcccCCEEEeCCceEecCCCc
Q 022563          232 FLKKYQKLAQEQKWKQPLLVALLYSLQLVDEESIPVTPYDVPVDALVSPRGFIPISPVA  290 (295)
Q Consensus       232 fL~~~~~~~~~~~~~~~~~IGlaf~~Qivd~~~lP~e~hDiplD~IITe~gii~~~~~~  290 (295)
                      ||+.++          +.+|||+|++|++++  +|+|+||++||+||||+|+++|....
T Consensus       139 ~L~~~~----------~~~igl~~~~Q~~~~--ip~e~hD~~ld~iiTe~~i~~~~~~r  185 (194)
T d1soua_         139 LLKRVK----------GLKVGVAYSFQVFER--LPRDAWDIPVDVLVTEKNVRRLRDGR  185 (194)
T ss_dssp             HHHHCC----------SEEEEECCGGGBCSC--CCCCSCCCCCSEEECSSCEEESCCCC
T ss_pred             hhhccC----------CCEEEEEecceecCC--CCCCCcCeECCEEEEccceEEecCCC
Confidence            999763          468999999999999  99999999999999999999997643
>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]} Back     information, alignment and structure