Citrus Sinensis ID: 022576

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
MFLQNLRRSVGRWSLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSLKPTSPLALSHRFLSSSVTQNKDHYEEHPLQHEETEAGETTDDGWEEEDEAEPQVGDGGDGGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNNMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLYLEY
cHHHHHHHHccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHccccEEEEEEEEcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccccccEEEEEEcccccccEEEEEEEEEEEEccccEEEEEEcccccccccccccccccccccccEEEEccccEEEEEEEEEc
cHHHHHHHHHccEEEEEEcccccccEEEEEEcccccccccEEEcccEEccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccEcccccccEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccEEEEEccHHHHHHccccEEEEEEcccccccccccEEEEEEEEccccEEEEEEEEcccccccccccccccHHHcccEccccHHHEEEEEEEEcc
MFLQNLRRSVGRWSLFFsssslstrrlsffalpniqhnsllfqnpcrfvdvslkptsplalshrflsssvtqnkdhyeehplqheeteagettddgweeedeaepqvgdggdgggvvfqgvpwgeRALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNNMEELESYSQEYKKKLDevgalgeipddlalevstpgaermlkvpddlgrfkempitvcyedqdsdsrekTGVFLLDSIEMDSEICVWKLadvkenrdpqekgrplsrkrrdwrlnlpFVMHKRVTLYLEY
mflqnlrrsvgrwsLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSLKPTSPLALSHRFLSSSVTQNKDHYeehplqheeteagETTDDGWEEEDEAepqvgdggdggGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNNMEELESYSQEYKKKLDEVgalgeipddlalevstpgaermlkvpddlgrfkeMPITvcyedqdsdsreKTGVFLLDSIEMDSEICVWkladvkenrdpqekgrplsrkrrdwrlnlpfvmhkrvtlyley
MFLQNLRRSVGRWslffsssslstrrlsffalPNIQHNSLLFQNPCRFVDVSLKPTSPLALSHRFLSSSVTQNKDHYEEHPLQHeeteagettddgweeedeaePqvgdggdgggvvfqgvPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNNMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLYLEY
********SVGRWSLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSL************************************************************GGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLS********************GALGEI***LAL***********KVPDDLGRFKEMPITVCYE*********TGVFLLDSIEMDSEICVWKLADV******************DWRLNLPFVMHKRVTLYL**
*********VGRWSLFFSS***************IQHNSLLFQNPCRF***************************************EAGETTDDGWEEEDEA********DGGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNNMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE******************RLNLPFVMHKRVTLYLEY
MFLQNLRRSVGRWSLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSLKPTSPLALSHRFLSSS***************************************DGGDGGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNNMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKE***********SRKRRDWRLNLPFVMHKRVTLYLEY
MFLQNLRRSVGRWSLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSLKPTSPLALSHRFLSSSV********************************AEPQVGDGGDGGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNNMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRD**EKGRPLSRKRRDWRLNLPFVMHKRVTLYLEY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFLQNLRRSVGRWSLFFSSSSLSTRRLSFFALPNIQHNSLLFQNPCRFVDVSLKPTSPLALSHRFLSSSVTQNKDHYEEHPLQHEETEAGETTDDGWEEEDEAEPQVGDGGDGGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRxxxxxxxxxxxxxxxxxxxxxxxxVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLYLEY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query295 2.2.26 [Sep-21-2011]
Q8F7K3162 Ribosome maturation facto yes no 0.308 0.561 0.349 1e-06
Q72NX1162 Ribosome maturation facto yes no 0.308 0.561 0.349 1e-06
Q04ZJ3162 Ribosome maturation facto yes no 0.355 0.648 0.296 8e-06
Q04U33162 Ribosome maturation facto yes no 0.355 0.648 0.296 8e-06
>sp|Q8F7K3|RIMP_LEPIN Ribosome maturation factor RimP OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) GN=rimP PE=3 SV=1 Back     alignment and function desciption
 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 15/106 (14%)

Query: 142 IKLYAFKATPR---GYVYVRLDKL-----SNNMEELESYSQEYKKKLDEVGALGEIPD-D 192
           +KLY+ K   R     + V LD L     S ++ E E  S++ K++L+ +      PD D
Sbjct: 20  VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELERIS-----PDLD 74

Query: 193 LALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVF 238
             L+VS+ GAER L +P DL RF+ +PI + +  ++S+ +E+ G+F
Sbjct: 75  YTLKVSSAGAERKLNLPGDLDRFRGIPIRLVFRSEESE-KEQEGIF 119
Required for maturation of 30S ribosomal subunits.
Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) (taxid: 189518)
>sp|Q72NX1|RIMP_LEPIC Ribosome maturation factor RimP OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni (strain Fiocruz L1-130) GN=rimP PE=3 SV=1 Back     alignment and function description
>sp|Q04ZJ3|RIMP_LEPBL Ribosome maturation factor RimP OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=rimP PE=3 SV=1 Back     alignment and function description
>sp|Q04U33|RIMP_LEPBJ Ribosome maturation factor RimP OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=rimP PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
356499905279 PREDICTED: uncharacterized protein LOC10 0.725 0.767 0.710 4e-79
357487659282 Ribosome maturation factor rimP [Medicag 0.911 0.953 0.538 5e-76
388510886282 unknown [Medicago truncatula] 0.911 0.953 0.535 5e-75
224112098229 predicted protein [Populus trichocarpa] 0.722 0.930 0.680 2e-69
297738103310 unnamed protein product [Vitis vinifera] 0.813 0.774 0.617 2e-69
225423440223 PREDICTED: uncharacterized protein LOC10 0.711 0.941 0.689 2e-68
147774154 1721 hypothetical protein VITISV_038204 [Viti 0.752 0.128 0.586 1e-65
449478348315 PREDICTED: uncharacterized protein LOC10 0.732 0.685 0.660 4e-65
449434720315 PREDICTED: uncharacterized protein LOC10 0.732 0.685 0.656 5e-65
18409217305 uncharacterized protein [Arabidopsis tha 0.606 0.586 0.605 1e-58
>gi|356499905|ref|XP_003518776.1| PREDICTED: uncharacterized protein LOC100806065 [Glycine max] Back     alignment and taxonomy information
 Score =  300 bits (769), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 157/221 (71%), Positives = 186/221 (84%), Gaps = 7/221 (3%)

Query: 80  HPLQHEETEAGETTDDGWEEEDEAEPQVGDGGDGGGVVFQGVPWGERALSIAHEVLLQLG 139
           H    E T+ G +TD GWEEEDE EP++GDGGDGGGV  Q VPWG+RALSIA EVL+Q  
Sbjct: 60  HHFPDETTDEGASTD-GWEEEDEVEPKIGDGGDGGGVALQNVPWGQRALSIAEEVLMQFS 118

Query: 140 DDIKLYAFKATPRGYVYVRLDKLSN-----NMEELESYSQEYKKKLDEVGALGEIPDDLA 194
           +DIKL+AFK TPRGYVYVRLDKL++     +MEELE Y+Q+YK +LDEVGALGEIPDDLA
Sbjct: 119 EDIKLFAFKTTPRGYVYVRLDKLTHEYGCPSMEELECYNQKYKTRLDEVGALGEIPDDLA 178

Query: 195 LEVSTPGAERMLKVPDDLGRFKEMPITVCY-EDQDSDSREKTGVFLLDSIEMDSEICVWK 253
           LEVS+PGAER+LKVPDD+ RFK++P+ VCY E+ +S+  EK GVFLLDSIE DSE+CVWK
Sbjct: 179 LEVSSPGAERLLKVPDDISRFKDLPMRVCYTENIESNCPEKDGVFLLDSIENDSEMCVWK 238

Query: 254 LADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLYLE 294
           LADVKENRDP +KGRPLSRK++DWRL LPF +H+ VTLYLE
Sbjct: 239 LADVKENRDPLKKGRPLSRKQKDWRLQLPFNLHRMVTLYLE 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357487659|ref|XP_003614117.1| Ribosome maturation factor rimP [Medicago truncatula] gi|355515452|gb|AES97075.1| Ribosome maturation factor rimP [Medicago truncatula] Back     alignment and taxonomy information
>gi|388510886|gb|AFK43509.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224112098|ref|XP_002316081.1| predicted protein [Populus trichocarpa] gi|222865121|gb|EEF02252.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297738103|emb|CBI27304.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225423440|ref|XP_002273771.1| PREDICTED: uncharacterized protein LOC100259261 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147774154|emb|CAN72408.1| hypothetical protein VITISV_038204 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449478348|ref|XP_004155292.1| PREDICTED: uncharacterized protein LOC101225208 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449434720|ref|XP_004135144.1| PREDICTED: uncharacterized protein LOC101211568 [Cucumis sativus] Back     alignment and taxonomy information
>gi|18409217|ref|NP_564954.1| uncharacterized protein [Arabidopsis thaliana] gi|13937141|gb|AAK50064.1|AF372924_1 At1g69210/F4N2_11 [Arabidopsis thaliana] gi|22137004|gb|AAM91347.1| At1g69210/F4N2_11 [Arabidopsis thaliana] gi|332196773|gb|AEE34894.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
TAIR|locus:2033263305 AT1G69210 "AT1G69210" [Arabido 0.583 0.563 0.612 3.7e-55
TAIR|locus:1005716723323 AT1G77122 "AT1G77122" [Arabido 0.579 0.529 0.395 5.8e-34
TAIR|locus:2033263 AT1G69210 "AT1G69210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 109/178 (61%), Positives = 143/178 (80%)

Query:   123 WGERALSIAHEVLLQLGDDIKLYAFKATPRGYVYVRLDKLSNN-----MEELESYSQEYK 177
             WGER LSIA +VL Q   D++L+AFK +PRGY+YVRLDKLS       M+ELE +S+E+K
Sbjct:   128 WGERVLSIAAQVLKQSEKDLELFAFKTSPRGYIYVRLDKLSTEYGCPTMDELEEFSREFK 187

Query:   178 KKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCY-EDQDSDSREKTG 236
             K+LD+ GA   IP+DLALEVS+PGAER+L+VP+DL RFK+MP+TV Y E+ +S    K+G
Sbjct:   188 KRLDDAGAEKVIPEDLALEVSSPGAERLLRVPEDLPRFKDMPMTVSYVEETNSRKAVKSG 247

Query:   237 VFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWRLNLPFVMHKRVTLYLE 294
             VFLL+SI+ +S+ CVWKLADV+ENRDP+ KGRPLSRK++D R+ LPF  HK++ LYL+
Sbjct:   248 VFLLESIDAESDNCVWKLADVRENRDPESKGRPLSRKQKDLRITLPFADHKKINLYLD 305
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
TAIR|locus:1005716723 AT1G77122 "AT1G77122" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00030022001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (313 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
pfam02576140 pfam02576, DUF150, Uncharacterized BCR, YhbC famil 2e-11
PRK14635162 PRK14635, PRK14635, hypothetical protein; Provisio 1e-08
COG0779153 COG0779, COG0779, Uncharacterized protein conserve 5e-04
>gnl|CDD|217116 pfam02576, DUF150, Uncharacterized BCR, YhbC family COG0779 Back     alignment and domain information 
 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 130 IAHEVLLQLGDDIKLYAFKATPRG-YVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALG 187
           +   V+  LG ++    F    RG  + + +DK     +++ E  S+     LD      
Sbjct: 1   LIEPVVESLGFELVDVEFVKEGRGWVLRIYIDKDGGVTLDDCEEVSRAISALLDVED--- 57

Query: 188 EIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITVCYEDQDSDSREKTGVFLLDSIEMDS 247
            IP+   LEVS+PG ER LK      RF    + V  ++     +  TG  L    E+D 
Sbjct: 58  PIPEAYFLEVSSPGLERPLKTERHFARFIGKLVKVSLKEPIDGRKNFTGKLL----EVDG 113

Query: 248 EICVWKLADVKENR 261
           +    ++ D +  R
Sbjct: 114 DTVTIEVDDKERKR 127

Length = 140
>gnl|CDD|184774 PRK14635, PRK14635, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|223850 COG0779, COG0779, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 295
PRK14640152 hypothetical protein; Provisional 100.0
PRK14633150 hypothetical protein; Provisional 100.0
COG0779153 Uncharacterized protein conserved in bacteria [Fun 100.0
PRK14647159 hypothetical protein; Provisional 100.0
PRK14632172 hypothetical protein; Provisional 100.0
PRK14646155 hypothetical protein; Provisional 100.0
PRK14643164 hypothetical protein; Provisional 100.0
PRK14634155 hypothetical protein; Provisional 100.0
PRK14638150 hypothetical protein; Provisional 100.0
PRK00092154 ribosome maturation protein RimP; Reviewed 100.0
PRK14639140 hypothetical protein; Provisional 100.0
PRK14636176 hypothetical protein; Provisional 100.0
PRK14631174 hypothetical protein; Provisional 100.0
PRK14635162 hypothetical protein; Provisional 100.0
PRK14630143 hypothetical protein; Provisional 100.0
PRK14641173 hypothetical protein; Provisional 100.0
PF02576141 DUF150: Uncharacterised BCR, YhbC family COG0779; 100.0
PRK14637151 hypothetical protein; Provisional 100.0
PRK14645154 hypothetical protein; Provisional 100.0
PRK02001152 hypothetical protein; Validated 100.0
PRK14642197 hypothetical protein; Provisional 100.0
PRK14644136 hypothetical protein; Provisional 100.0
cd0173483 YlxS_C YxlS is a Bacillus subtilis gene of unknown 99.85
cd0616875 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins 84.68
>PRK14640 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-38  Score=274.84  Aligned_cols=146  Identities=18%  Similarity=0.254  Sum_probs=130.7

Q ss_pred             CHHHHHHHHHHHHHhhcCCeEEEEEE-eeCCCcEEEEEEeCCCC-ChhhHHHHHHHHHHhhhccccCCCCCCCeEEEEec
Q 022576          122 PWGERALSIAHEVLLQLGDDIKLYAF-KATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALEVST  199 (295)
Q Consensus       122 ~~~ekI~el~epvle~~G~eLvdVe~-k~~~~~~LrV~IDk~~G-sIDDCe~vSR~Is~~LD~~e~~d~I~~~Y~LEVSS  199 (295)
                      ...++++++++|+++++||+||+|+| +.++.++|||+||+++| |+|||+.+||+|+++||   +.|+|+++|+|||||
T Consensus         3 ~~~~~i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD---~~d~i~~~Y~LEVSS   79 (152)
T PRK14640          3 TLEQRLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMD---VEDPITEEYYLEVSS   79 (152)
T ss_pred             hHHHHHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc---ccccCCCCeEEEEeC
Confidence            36788999999999999999999999 66778999999999999 99999999999999999   578999999999999


Q ss_pred             CCCCCCCCChHHHhhcCCCeeEEEE-eecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccccCCCCCCCcccccccccee
Q 022576          200 PGAERMLKVPDDLGRFKEMPITVCY-EDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRPLSRKRRDWR  278 (295)
Q Consensus       200 PGiERpLk~~~df~RfiGr~V~V~l-~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~nr~~~~KGr~l~kKq~e~~  278 (295)
                      ||++|||++++||+||+|++|+|++ .+.+|++ .++|+|  .+++++++++.             .+|++         
T Consensus        80 PGl~RpL~~~~~f~r~~G~~v~V~l~~~~~~~k-~~~G~L--~~v~~~~v~l~-------------~~~~~---------  134 (152)
T PRK14640         80 PGLDRPLFKVAQFEKYVGQEAAVTLRMATNNRR-KFKGVI--KAVQGDMITLT-------------VDGKD---------  134 (152)
T ss_pred             CCCCCcCCCHHHHHHhCCCeEEEEEecccCCce-EEEEEE--EEEeCCEEEEE-------------ECCeE---------
Confidence            9999999999999999999999999 7777775 578988  89999877433             12332         


Q ss_pred             EEeeccCcceeEEEEeC
Q 022576          279 LNLPFVMHKRVTLYLEY  295 (295)
Q Consensus       279 v~Ipf~~IkkArL~iEF  295 (295)
                      ..|||++|+||||.++|
T Consensus       135 ~~i~~~~I~ka~l~~~~  151 (152)
T PRK14640        135 EVLAFTNIQKANIVPNF  151 (152)
T ss_pred             EEEEhHHeeeEEEeccc
Confidence            78999999999999987

>PRK14633 hypothetical protein; Provisional Back     alignment and domain information
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK14647 hypothetical protein; Provisional Back     alignment and domain information
>PRK14632 hypothetical protein; Provisional Back     alignment and domain information
>PRK14646 hypothetical protein; Provisional Back     alignment and domain information
>PRK14643 hypothetical protein; Provisional Back     alignment and domain information
>PRK14634 hypothetical protein; Provisional Back     alignment and domain information
>PRK14638 hypothetical protein; Provisional Back     alignment and domain information
>PRK00092 ribosome maturation protein RimP; Reviewed Back     alignment and domain information
>PRK14639 hypothetical protein; Provisional Back     alignment and domain information
>PRK14636 hypothetical protein; Provisional Back     alignment and domain information
>PRK14631 hypothetical protein; Provisional Back     alignment and domain information
>PRK14635 hypothetical protein; Provisional Back     alignment and domain information
>PRK14630 hypothetical protein; Provisional Back     alignment and domain information
>PRK14641 hypothetical protein; Provisional Back     alignment and domain information
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [] Back     alignment and domain information
>PRK14637 hypothetical protein; Provisional Back     alignment and domain information
>PRK14645 hypothetical protein; Provisional Back     alignment and domain information
>PRK02001 hypothetical protein; Validated Back     alignment and domain information
>PRK14642 hypothetical protein; Provisional Back     alignment and domain information
>PRK14644 hypothetical protein; Provisional Back     alignment and domain information
>cd01734 YlxS_C YxlS is a Bacillus subtilis gene of unknown function with two domains that each have an alpha/beta fold Back     alignment and domain information
>cd06168 LSm9 The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
1ib8_A164 Conserved protein SP14.3; nucleic acid binding pro 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1 Length = 164 Back     alignment and structure
 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 165 NMEELESYSQEYKKKLDEVGALGEIPDDLALEVSTPGAERMLKVPDDLGRFKEMPITV 222
            + +    ++     LD +      P+   LE+++PG ER LK  D +       I V
Sbjct: 53  TLNDTADLTEMISPVLDTIKPDP-FPEQYFLEITSPGLERPLKTKDAVAGAVGKYIHV 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
1ib8_A164 Conserved protein SP14.3; nucleic acid binding pro 100.0
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1 Back     alignment and structure
Probab=100.00  E-value=7e-40  Score=284.24  Aligned_cols=159  Identities=19%  Similarity=0.248  Sum_probs=136.2

Q ss_pred             CCceeecCCCHHHHHHHHHHHHHhhcCCeEEEEEE-eeCCCcEEEEEEeCCCC-ChhhHHHHHHHHHHhhhccccCCCCC
Q 022576          113 GGGVVFQGVPWGERALSIAHEVLLQLGDDIKLYAF-KATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIP  190 (295)
Q Consensus       113 g~~i~~~~~~~~ekI~el~epvle~~G~eLvdVe~-k~~~~~~LrV~IDk~~G-sIDDCe~vSR~Is~~LD~~e~~d~I~  190 (295)
                      |.|+..+ ....++|+++++|++++ ||+||+|++ +.+++++|||+||+++| ++|||+++||+|++.||+. ++|+|+
T Consensus         1 ~~~~~mm-~~~~~~v~~li~p~~~~-g~eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD~~-~~d~i~   77 (164)
T 1ib8_A            1 GSGVDAI-ATIVELVREVVEPVIEA-PFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDTI-KPDPFP   77 (164)
T ss_dssp             CCSCCHH-HHHHHHHHHHHHHHHCS-SSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTTTC-CSCCCC
T ss_pred             CchhHHH-HHHHHHHHHHHHHHHcC-CcEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc-cccCCC
Confidence            3455544 34678999999999999 999999999 77788999999999999 9999999999999999942 368999


Q ss_pred             CCeEEEEecCCCCCCCCChHHHhhcCCCeeEEEE-eecCCCeeEEeEEEEEeeeeCCeeEEEEEeecccccCCCCCCCcc
Q 022576          191 DDLALEVSTPGAERMLKVPDDLGRFKEMPITVCY-EDQDSDSREKTGVFLLDSIEMDSEICVWKLADVKENRDPQEKGRP  269 (295)
Q Consensus       191 ~~Y~LEVSSPGiERpLk~~~df~RfiGr~V~V~l-~~~eG~k~~~~GvL~L~svded~itv~~~LaDVk~nr~~~~KGr~  269 (295)
                      ++|+|||||||++|||++++||+||+|+.|+|++ .+++|+++ ++|+|  .+++++.+++.+.           .|++.
T Consensus        78 ~~Y~LEVSSPGldRpL~~~~df~r~~G~~V~V~l~~~~~g~k~-~~G~L--~~~~~~~v~l~~~-----------~k~~~  143 (164)
T 1ib8_A           78 EQYFLEITSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKV-FEGTL--LAFEEDELTMEYM-----------DKTRK  143 (164)
T ss_dssp             SCEEEEEECCSSSSCCSSHHHHHHHCSEEEEEECSSCSSSCSE-EEEEE--EEEETTEEEEEEE-----------CSSCE
T ss_pred             CCeEEEEeCCCCCCCCCCHHHHHHhCCcEEEEEEecccCCceE-EEEEE--EEEeCCEEEEEEe-----------cccCC
Confidence            9999999999999999999999999999999999 77888754 68987  8999998855543           11110


Q ss_pred             ccccccceeEEeeccCcceeEEEEeC
Q 022576          270 LSRKRRDWRLNLPFVMHKRVTLYLEY  295 (295)
Q Consensus       270 l~kKq~e~~v~Ipf~~IkkArL~iEF  295 (295)
                             ..++|||++|++|||.++|
T Consensus       144 -------~~~~i~~~~I~ka~l~~ef  162 (164)
T 1ib8_A          144 -------KTVQIPYSLVSKARLAVKL  162 (164)
T ss_dssp             -------EEEEECSSCCSSCEEECSC
T ss_pred             -------eEEEEEHHHCcEEEEEEEe
Confidence                   1378999999999999998

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
d1ib8a290 Hypothetical protein SP14.3 (SP0552) {Streptococcu 99.89
d1ib8a174 Hypothetical protein SP14.3 (SP0552) {Streptococcu 99.44
>d1ib8a2 d.52.4.1 (A:1-90) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: YhbC-like, N-terminal domain
family: YhbC-like, N-terminal domain
domain: Hypothetical protein SP14.3 (SP0552)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.89  E-value=1.2e-23  Score=165.11  Aligned_cols=80  Identities=16%  Similarity=0.235  Sum_probs=73.3

Q ss_pred             CHHHHHHHHHHHHHhhcCCeEEEEEE-eeCCCcEEEEEEeCCCC-ChhhHHHHHHHHHHhhhccccCCCCCCCeEEEEec
Q 022576          122 PWGERALSIAHEVLLQLGDDIKLYAF-KATPRGYVYVRLDKLSN-NMEELESYSQEYKKKLDEVGALGEIPDDLALEVST  199 (295)
Q Consensus       122 ~~~ekI~el~epvle~~G~eLvdVe~-k~~~~~~LrV~IDk~~G-sIDDCe~vSR~Is~~LD~~e~~d~I~~~Y~LEVSS  199 (295)
                      .+.++|+++++|+++ +||+||+|+| +.+++++|||+||+++| ++|||+++||.|+++||.. +.++|+++|+|||||
T Consensus         9 ~i~e~i~~li~pvv~-~G~eL~~ve~~~~~~~~~l~I~ID~~~gv~iddC~~vSr~is~~LD~~-e~d~i~~~Y~LEVSS   86 (90)
T d1ib8a2           9 TIVELVREVVEPVIE-APFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLDTI-KPDPFPEQYFLEITS   86 (90)
T ss_dssp             HHHHHHHHHHHHHHC-SSSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTTTC-CSCCCCSCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHh-CCCEEEEEEEEeCCCCEEEEEEEECCCCcCHHHHHHHHHHHHHHhccc-cccCCCCCeEEEeeC
Confidence            678899999999996 7999999999 66778899999999999 9999999999999999952 257999999999999


Q ss_pred             CCCC
Q 022576          200 PGAE  203 (295)
Q Consensus       200 PGiE  203 (295)
                      ||+|
T Consensus        87 PGld   90 (90)
T d1ib8a2          87 PGLE   90 (90)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            9996
>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure