Citrus Sinensis ID: 022577

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLK
Secondary Structure (PSIPRED)
ccccHHHHHHHcccccccccccEEEccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHcccccccccEEEEccccccHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccEccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHccccccccccccccc
Coil and Loop (DISEMBL)
mskcgyiarlelqpsisnlgydlklenfpggseTFEIILKFCyglpiafnpnniaplrcasefldmseeyedgnliskTEAFLTLVILSSWKETITVLKScknlspwaENLQIVRRCCDSIAWkasrensttedianrqgwwfddvatlGIDHFMRIITTIkvkgtkpeiIGKCIMHYAKKWlpgmdveleglrgygygkhELQFSILNAGKEEVSVGQKEQRTIIENLVNllphqdegvscKFFLQMLKMAMVYNASPALISELEKRVGMMLedanandllipnyknedhaklk
Flexible Loop (DISEMBL)
MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWkasrensttedianrqgwwFDDVATLGIDHFMRIITTikvkgtkpeiIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDanandllipnyknedhaklk
Low Complexity Region (SEG)
MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLK
Disordered region (IsUnstruct)
***CGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLI************
Disordered Region (DISOPRED)
*SKCGYI****************KLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRE***********GWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGM*********************************KEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLL*************
Disordered Region (DISEMBL)
MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGK********EQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLK
Disordered Region (DISPRO)
***CGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGM********************************QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q9LFU0	607	Putative BTB/POZ domain-c	yes	no	0.983	0.477	0.625	1e-107
Q5KS50	762	Coleoptile phototropism p	yes	no	0.881	0.341	0.408	4e-68
Q9FMF5	746	Root phototropism protein	no	no	0.945	0.373	0.391	6e-67
Q9SN21	526	Putative BTB/POZ domain-c	no	no	0.928	0.520	0.367	5e-47
Q9S9Q9	665	BTB/POZ domain-containing	no	no	0.871	0.386	0.326	2e-45
Q9FN09	579	BTB/POZ domain-containing	no	no	0.820	0.417	0.340	3e-45
Q9FNB3	591	Putative BTB/POZ domain-c	no	no	0.922	0.460	0.354	4e-45
Q66GP0	604	BTB/POZ domain-containing	no	no	0.928	0.453	0.343	5e-45
Q9LYW0	592	BTB/POZ domain-containing	no	no	0.911	0.454	0.334	5e-43
Q9C9V6	631	BTB/POZ domain-containing	no	no	0.922	0.431	0.362	1e-42

>sp|Q9LFU0|DOT3_ARATH Putative BTB/POZ domain-containing protein DOT3 OS=Arabidopsis thaliana GN=DOT3 PE=3 SV=1

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 184/294 (62%), Positives = 237/294 (80%), Gaps = 4/294 (1%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI+ +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+  NP N+APLRCA
Sbjct: 71  ISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCA 130

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SE+L M+EE+E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWAENLQIVRRCCD 
Sbjct: 131 SEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDL 190

Query: 121 IAWKASRENSTTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
           +AWKA  +N+  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  KP+I GK IM YA
Sbjct: 191 LAWKACNDNNIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYA 250

Query: 180 KKWLPGMDVELEGLRGYGYGKHELQFSILNAGK--EEVSVGQKEQRTIIENLVNLLPHQD 237
             +LP ++ +LEG++GYG GK+ELQFS+ N G+  E  S+G +E +  IE+LV++LP Q 
Sbjct: 251 DNFLPVINDDLEGIKGYGLGKNELQFSV-NRGRMEESNSLGCQEHKETIESLVSVLPPQS 309

Query: 238 EGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDH 291
             VSC F L+MLK ++VY+ASPALIS+LEKRVGM LEDAN  DLLIPN+KNE+ 
Sbjct: 310 GAVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEEQ 363

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1

 Score =  258 bits (659), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 134/328 (40%), Positives = 190/328 (57%), Gaps = 68/328 (20%)

Query: 27  NFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLV 86
           + PGG+ +FE+  +F YG+ +     NI+ LRCA+E+L+M+EE E+GNLI KTEAFL+ V
Sbjct: 104 DLPGGAGSFELAARFSYGMAVDLTAANISGLRCAAEYLEMTEEMEEGNLIFKTEAFLSYV 163

Query: 87  ILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKA--------------------- 125
           +LSSW+++I VLKSC+ LSPWAENLQIVRRC +SIAWKA                     
Sbjct: 164 VLSSWRDSIAVLKSCEALSPWAENLQIVRRCSESIAWKACANPRGVRWAYTGAGAGSGGA 223

Query: 126 ------------------------------SRENSTTEDIANRQGWWFDDVATLGIDHFM 155
                                         S+E+S +        WWF+DV+ L IDHF+
Sbjct: 224 RGGPAAIRGGGGSGGTASPRWNVGGGGGGESKESSPSRQAVPPADWWFEDVSVLRIDHFV 283

Query: 156 RIITTIKVKGTKPEIIGKCIMHYAKKWLPGM--DVELEGLRGYGYGK-----------HE 202
           R++T IKVKG + ++IG  I HYA KWLPG+  D  L       + +           H 
Sbjct: 284 RVVTAIKVKGMRFDLIGAAITHYASKWLPGLTKDAPLGATHDEPWAQASAAGVGGGGLHM 343

Query: 203 LQFSILNAGKEEV----SVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNAS 258
           +  S    GK++V    S   +EQR ++E+++++ P Q + VSC F L++L++A++  A+
Sbjct: 344 MIISGAGGGKDDVLAACSAPSREQRMVVESIISITPPQRDSVSCGFLLRLLRLAIMLRAA 403

Query: 259 PALISELEKRVGMMLEDANANDLLIPNY 286
           PAL++ELEKRVGM LE A   DLLIP+Y
Sbjct: 404 PALVTELEKRVGMQLEQAALADLLIPSY 431

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Plays a role as signal transduction component in coleoptile phototropism and lateral translocation of auxin.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FMF5|RPT3_ARATH Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=2

 Score =  254 bits (648), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 148/378 (39%), Positives = 204/378 (53%), Gaps = 99/378 (26%)

Query: 1   MSKCGYIARL-----ELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIA 55
           +S+ G + RL     +  P+I      L L++ PGG E FE+  KFCYG+P+     NI+
Sbjct: 73  LSRSGKMNRLIYESRDPDPTI------LILDDLPGGPEAFELASKFCYGVPVDLTATNIS 126

Query: 56  PLRCASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVR 115
            LRCA+E+L+M+E+ E+GNLI KTEAFL+ V+LSSW+++I VLKSC+ LSPWAENLQIVR
Sbjct: 127 GLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVR 186

Query: 116 RCCDSIAWKA-------------SRENSTTEDIA----------------------NRQ- 139
           RC +SIAWKA                + +T + A                      N Q 
Sbjct: 187 RCSESIAWKACSNPKGIRWAYTGKAPSPSTTNFAGSSPRWNESKDSSFYCSPSRNTNSQP 246

Query: 140 ---GWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVE------- 189
               WWF+DV+ L IDHF+R+IT IKVKG + E++G  IMHYA KWLPG+  E       
Sbjct: 247 VPPDWWFEDVSILRIDHFVRVITAIKVKGMRFELLGAVIMHYAGKWLPGLIKEGGVAIAP 306

Query: 190 ---------------------------LEGLRGYGYGKHELQFSILNAGKEE-------- 214
                                            +  G H     +L+AGK          
Sbjct: 307 AMSSAIGGGLGLGGDEMSISCGSNSSGGSSGPDWKGGLH----MVLSAGKTNGHQDSVAC 362

Query: 215 ---VSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGM 271
              + +  K+QR I+E+L++++P Q + V+C F L++L+ A +   +PALI+ELEKRVGM
Sbjct: 363 LAGLGISPKDQRMIVESLISIIPPQKDSVTCSFLLRLLRAANMLKVAPALITELEKRVGM 422

Query: 272 MLEDANANDLLIPNYKNE 289
             E A   DLLIP Y N+
Sbjct: 423 QFEQATLQDLLIPGYNNK 440

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Signal transducer of the phototropic response and photo-induced movements. Involved in the phot1 pathway under low blue light (LBL) fluence rate and in the phot2 pathway under higher fluence rate of blue light (HBL). Necessary for root and hypocotyl phototropisms, but not for the regulation of stomata opening. Not involved in chloroplast accumulation and translocation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN21|Y3997_ARATH Putative BTB/POZ domain-containing protein At3g49970 OS=Arabidopsis thaliana GN=At3g49970 PE=3 SV=1

 Score =  188 bits (477), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 105/286 (36%), Positives = 165/286 (57%), Gaps = 12/286 (4%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCG+I +L  + S  N    +++ +FPGG+E FE+++KFCY +    N  NIA L CA
Sbjct: 15  VSKCGFIKKLASESS--NDSNIIRIPDFPGGAEGFELVIKFCYDISFEINTENIAMLLCA 72

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           +E+L+M+EE+   NL+   E +L  VIL S  +++ VL+  ++L P AE +++V RC DS
Sbjct: 73  AEYLEMTEEHSVENLVETIEVYLNEVILKSLSKSVKVLQKSQDLLPIAERVRLVDRCIDS 132

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IA+   +E+ + EDI +   WW DD+A L ID F R++  +  +G K   +G  +  YA+
Sbjct: 133 IAYAICQESQSNEDIVD---WWADDLAVLKIDMFRRVLVAMIARGFKRYSLGPVLKLYAE 189

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGV 240
           K L G+      +R   +   +       A K E    + E+R I+E +V+LLP +   V
Sbjct: 190 KALRGL------VRFLNFLTEQCDIFGKEAKKMEAE-QEHEKRLILETIVSLLPRERNSV 242

Query: 241 SCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY 286
           S  F   +L+ A+    + A   +LEKR+G+ L  A  +DLLIP Y
Sbjct: 243 SVSFLSILLRAAIYLETTVACRLDLEKRMGLQLRQAVIDDLLIPYY 288

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9Q9|Y1044_ARATH BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2

 Score =  182 bits (463), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 161/294 (54%), Gaps = 37/294 (12%)

Query: 23  LKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAF 82
           +++ + PGG +TFE++ KFCYG+ +    +N+  LRCA+E L+M+EE+ +GNLIS+TE F
Sbjct: 70  IEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEGNLISQTETF 129

Query: 83  LTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRE-------------- 128
              V+L SWK++I  L SC  +  +A+ L I ++C +S+A +AS +              
Sbjct: 130 FNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRASTDPNLFGWPVVEHGGP 189

Query: 129 -------------NSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCI 175
                        ++          WW++D + L    F R+IT ++ +G + +II   +
Sbjct: 190 MQSPGGSVLWNGISTGARPKHTSSDWWYEDASMLSFPLFKRLITVMESRGIREDIIAGSL 249

Query: 176 MHYAKKWLPGMDVELEGLRGYGYGKHELQFSI-LNAGKEEVSVGQKEQRTIIENLVNLLP 234
            +Y +K LPG+     G    G      +FS  L +G     + ++EQ+ ++E +  LL 
Sbjct: 250 TYYTRKHLPGLKRRRGGPESSG------RFSTPLGSGN---VLSEEEQKNLLEEIQELLR 300

Query: 235 HQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKN 288
            Q   V  KFF+ ML++A +  ASP  I+ LEKR+GM L+ A   DL++P++ +
Sbjct: 301 MQKGLVPTKFFVDMLRIAKILKASPDCIANLEKRIGMQLDQAALEDLVMPSFSH 354

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN09|NPY3_ARATH BTB/POZ domain-containing protein NPY3 OS=Arabidopsis thaliana GN=NPY3 PE=2 SV=1

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 156/279 (55%), Gaps = 37/279 (13%)

Query: 22  DLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA 81
           ++++ + PGG   FEI  KFCYG+ +  N  N+  +RCA+E+L+M E  E+GNL+ K E 
Sbjct: 71  EIRIPDIPGGPPAFEICAKFCYGMAVTLNAYNVVAVRCAAEYLEMYESIENGNLVYKMEV 130

Query: 82  FLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTE--DIANR- 138
           FL   +L SWK++I VL++ ++  PW+E++++  RC +SIA KA+ + +  +     NR 
Sbjct: 131 FLNSSVLRSWKDSIIVLQTTRSFYPWSEDVKLDVRCLESIALKAAMDPARVDWSYTYNRR 190

Query: 139 -------------QGWWFDDVATLGIDHFMRIITTIKVK-GTKPEIIGKCIMHYAKKWLP 184
                        + WW +D+A L ID F R+++TI+ K G  PE+IG+ +  YA K +P
Sbjct: 191 KLLPPEMNNNSVPRDWWVEDLAELSIDLFKRVVSTIRRKGGVLPEVIGEALEVYAAKRIP 250

Query: 185 GMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKF 244
           G                     ++     +      EQR+++E LV++LP + + VSC F
Sbjct: 251 GF--------------------MIQNDDNDDEEDVMEQRSLLETLVSMLPSEKQSVSCGF 290

Query: 245 FLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLI 283
            +++LK ++ +        EL +R+G  LE+AN  DLLI
Sbjct: 291 LIKLLKSSVSFECGEEERKELSRRIGEKLEEANVGDLLI 329

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). May play an essential role in auxin-mediated organogenesis and in root gravitropic responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNB3|Y5360_ARATH Putative BTB/POZ domain-containing protein At5g13600 OS=Arabidopsis thaliana GN=At5g13600 PE=3 SV=1

 Score =  181 bits (460), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 167/316 (52%), Gaps = 44/316 (13%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +S+ GY+  L  + S +      +L + PGG ETF ++ KFCYG+ I   P N   LRCA
Sbjct: 47  LSRSGYLETLFSKASETTCV--AQLHDIPGGPETFLLVAKFCYGVRIEVTPENAVSLRCA 104

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVL-KSCK-NLSPWAENLQIVRRCC 118
           +E+L MSE Y D NLI  TE+FL   +  +W+++I  L KSC+  + P AE L IV RC 
Sbjct: 105 AEYLQMSENYGDANLIYLTESFLNDHVFVNWEDSIKALEKSCEPKVLPLAEELHIVSRCI 164

Query: 119 DSIAWKASRENSTT----------------------EDIANRQGWWFDDVAT-LGIDHFM 155
            S+A KA  E++T+                      +  A  + WWF+DV++ L +  + 
Sbjct: 165 GSLAMKACAEDNTSFFNWPISLPEGTTTTTIYWNGIQTKATSENWWFNDVSSFLDLPMYK 224

Query: 156 RIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELE----GLRGYGYGKHELQFSILNAG 211
           R I T++ +G    II   + HYAK+ LP +    +       G  YG            
Sbjct: 225 RFIKTVESRGVNAGIIAASVTHYAKRNLPLLGCSRKSGSPSEEGTNYG------------ 272

Query: 212 KEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGM 271
            +++    +EQR+++E +V LLP +    S KF L++L+ +MV +AS      LEKR+GM
Sbjct: 273 -DDMYYSHEEQRSLLEEIVELLPGKKCVTSTKFLLRLLRTSMVLHASQVTQETLEKRIGM 331

Query: 272 MLEDANANDLLIPNYK 287
            L++A   DLLIPN K
Sbjct: 332 QLDEAALEDLLIPNMK 347

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q66GP0|Y5738_ARATH BTB/POZ domain-containing protein At5g67385 OS=Arabidopsis thaliana GN=At5g67385 PE=2 SV=2

 Score =  181 bits (460), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 168/309 (54%), Gaps = 35/309 (11%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           MSKCG+I +L  + S  +    +K+ + PGGSE FE+  KFCYG+    +  NIA LRCA
Sbjct: 46  MSKCGFIKKLVSESSKDSDSTVIKIPDIPGGSEAFELAAKFCYGINFDMSTENIAMLRCA 105

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           +E+L+M+EE+   NL+ + EA+L  V L S   +ITVL   + L P AE +++V RC D+
Sbjct: 106 AEYLEMTEEHSVENLVVRAEAYLNEVALKSLSSSITVLHKSEKLLPIAERVKLVSRCIDA 165

Query: 121 IAWKASREN----------STTEDIANRQG------WWFDDVATLGIDHFMRIITTIKVK 164
           IA+   +E+             E +  +Q       WW +D+  L ID F R++  +  +
Sbjct: 166 IAYMTCQESHFCSPSSSNSGNNEVVVQQQSKQPVVDWWAEDLTVLRIDSFQRVLIAMMAR 225

Query: 165 GTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRT 224
           G K   +G  +M YA+K L G+++       +G G  +++       K+E      E+R 
Sbjct: 226 GFKQYGLGPVLMLYAQKSLRGLEI-------FGKGMKKIE------PKQE-----HEKRV 267

Query: 225 IIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIP 284
           I+E +V+LLP +   +S  F   +L+ A+    + A   +LE R+G+ L  A  +DLLIP
Sbjct: 268 ILETIVSLLPREKNAMSVSFLSMLLRAAIFLETTVACRLDLENRMGLQLGQAVLDDLLIP 327

Query: 285 NYK-NEDHA 292
           +Y    DH+
Sbjct: 328 SYSFTGDHS 336

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana GN=At5g03250 PE=2 SV=1

 Score =  174 bits (442), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 106/317 (33%), Positives = 167/317 (52%), Gaps = 48/317 (15%)

Query: 1   MSKCGYIARLELQPSISN-LGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRC 59
           +S+ G + RL  + S  +  G  L L+  PGG +TFE++ KFCYG+ I     N+  LRC
Sbjct: 47  LSRSGLLERLIEESSTDDGSGCVLSLDEIPGGGKTFELVTKFCYGVKIELTAFNVVSLRC 106

Query: 60  ASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCD 119
           A+E+L+M++ Y +GNL+  TE FL  V   +W ++I  L++C+ +  +AE+L I+ RC D
Sbjct: 107 AAEYLEMTDNYGEGNLVGMTETFLNEV-FGNWTDSIKALQTCEEVIDYAEDLHIISRCVD 165

Query: 120 SIAWKASRENS----------------TTEDIAN---------------RQGWWFDDVAT 148
           S+A KA  + S                 TED ++                + WWFDD + 
Sbjct: 166 SLAVKACADPSLFNWPVGGGKNATSGQNTEDESHLWNGISASGKMLQHTGEDWWFDDASF 225

Query: 149 LGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSIL 208
           L +  F R+IT I+ +G K E I   +M+Y +K +P M+                Q ++ 
Sbjct: 226 LSLPLFKRLITAIEARGMKLENIAMAVMYYTRKHVPLMN---------------RQVNMD 270

Query: 209 NAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKR 268
               E  +  +++Q+T +E +V LLP +      KF L++L+ AMV +AS +    LE+R
Sbjct: 271 EQVIETPNPSEEDQKTCLEEIVGLLPSKKGVNPTKFLLRLLQTAMVLHASQSSRENLERR 330

Query: 269 VGMMLEDANANDLLIPN 285
           +G  L+ A   DLLIPN
Sbjct: 331 IGNQLDQAALVDLLIPN 347

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9V6|Y1790_ARATH BTB/POZ domain-containing protein At1g67900 OS=Arabidopsis thaliana GN=At1g67900 PE=1 SV=1

 Score =  173 bits (439), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 113/312 (36%), Positives = 170/312 (54%), Gaps = 40/312 (12%)

Query: 1   MSKCGYIARL--ELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLR 58
           +SKC  + R+  E   SI      ++L  FPGG E FE+  KFCYG+ I  +  NI   R
Sbjct: 47  LSKCLRLQRMCSESPESI------IQLPEFPGGVEAFELCAKFCYGITITISAYNIVAAR 100

Query: 59  CASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCC 118
           CA+E+L MSEE E GNL+ K E F    IL+ W+++I  L++ K    W+E+L I  RC 
Sbjct: 101 CAAEYLQMSEEVEKGNLVYKLEVFFNSCILNGWRDSIVTLQTTKAFPLWSEDLAITSRCI 160

Query: 119 DSIAWKA-------------SR-----ENSTTEDIANRQGWWFDDVATLGIDHFMRIITT 160
           ++IA K              SR     + S+    A+ +GWW +D+A LGID + R +  
Sbjct: 161 EAIASKVLSHPSKVSLSHSHSRRVRDDDMSSNRAAASSRGWWAEDIAELGIDLYWRTMIA 220

Query: 161 IKVKGTKP-EIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQ 219
           IK  G  P  +IG  +  YA KWLP +    + ++     K E      ++  +  +   
Sbjct: 221 IKSGGKVPASLIGDALRVYASKWLPTLQRNRKVVK-----KKE------DSDSDSDTDTS 269

Query: 220 KEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANAN 279
            + R ++E++++LLP +   VSC F L++LK A + NAS +   EL +RV + LE+A  +
Sbjct: 270 SKHRLLLESIISLLPAEKGAVSCSFLLKLLKAANILNASTSSKMELARRVALQLEEATVS 329

Query: 280 DLLIP--NYKNE 289
           DLLIP  +YK+E
Sbjct: 330 DLLIPPMSYKSE 341

May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
255580882	643	Root phototropism protein, putative [Ric	0.993	0.455	0.765	1e-133
429326652	637	transposase [Populus tomentosa]	0.983	0.455	0.749	1e-129
224093756	544	predicted protein [Populus trichocarpa]	0.983	0.533	0.749	1e-129
224081144	540	predicted protein [Populus trichocarpa]	0.996	0.544	0.755	1e-129
359497198	571	PREDICTED: putative BTB/POZ domain-conta	0.996	0.514	0.722	1e-126
359497580	556	PREDICTED: putative BTB/POZ domain-conta	0.996	0.528	0.718	1e-126
356528467	626	PREDICTED: putative BTB/POZ domain-conta	0.993	0.468	0.710	1e-123
356511091	629	PREDICTED: putative BTB/POZ domain-conta	0.993	0.465	0.704	1e-122
296084654	489	unnamed protein product [Vitis vinifera]	0.911	0.550	0.680	1e-115
296090702	459	unnamed protein product [Vitis vinifera]	0.911	0.586	0.673	1e-113

>gi|255580882|ref|XP_002531260.1| Root phototropism protein, putative [Ricinus communis] gi|223529145|gb|EEF31124.1| Root phototropism protein, putative [Ricinus communis]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 225/294 (76%), Positives = 251/294 (85%), Gaps = 1/294 (0%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI RLELQPSISN GY+LKLENFPGGSE FEIILKFCYGLP+  NPNNIA LRCA
Sbjct: 92  VSKCGYIGRLELQPSISNFGYELKLENFPGGSEAFEIILKFCYGLPLDLNPNNIAALRCA 151

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+MSEE EDGNLISKTEAFLT V+LSSWK+TITVLKSC+ LSPWAENLQIVRRCCDS
Sbjct: 152 SEFLEMSEELEDGNLISKTEAFLTFVVLSSWKDTITVLKSCETLSPWAENLQIVRRCCDS 211

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKASR+NST  +I N +GWWFDDVATL  DHFMRI+T ++ KG KPEI GKCIMHYA 
Sbjct: 212 IAWKASRDNSTVHNIINEEGWWFDDVATLRTDHFMRIVTAVRAKGAKPEITGKCIMHYAS 271

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQ-KEQRTIIENLVNLLPHQDEG 239
           +WLPGMDVELEGLRGY YGK+ELQF IL    ++  VG  KEQ+ IIE++V LLP Q E 
Sbjct: 272 RWLPGMDVELEGLRGYRYGKNELQFGILCGRNKDEGVGHSKEQKNIIESIVRLLPPQPEA 331

Query: 240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAK 293
           V CKF L+MLKMA+VY+ASPALISELE RVG+ LE+A+ NDLLIPNYK ED  K
Sbjct: 332 VPCKFLLKMLKMAIVYSASPALISELEMRVGLTLENASVNDLLIPNYKTEDQVK 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|429326652|gb|AFZ78666.1| transposase [Populus tomentosa]

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/295 (74%), Positives = 252/295 (85%), Gaps = 5/295 (1%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI RLELQPSISN GY+LKLENFPGGSE F+IILKFCYGLP+  NP+N APLRCA
Sbjct: 90  VSKCGYIGRLELQPSISNFGYELKLENFPGGSEAFKIILKFCYGLPLDLNPSNSAPLRCA 149

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+MSEE +DGNLISKTEAFLT V+LSSWK+TITVLKSC+ LSPWAENLQIVRRCCDS
Sbjct: 150 SEFLEMSEEIDDGNLISKTEAFLTFVVLSSWKDTITVLKSCETLSPWAENLQIVRRCCDS 209

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKA R+NS    + N +GW FDDVA+L IDHFMRIIT I+ +G KPEIIGKCIM YA 
Sbjct: 210 IAWKAPRDNS----MVNDEGWCFDDVASLRIDHFMRIITAIRARGAKPEIIGKCIMRYAD 265

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQ-KEQRTIIENLVNLLPHQDEG 239
           +WLPGMD ELEGLRGYGYGK+ELQFSIL   KE+  +   KEQ++IIE+LV++LP Q E 
Sbjct: 266 RWLPGMDAELEGLRGYGYGKNELQFSILIGRKEDEGIEHSKEQKSIIESLVSILPSQPEA 325

Query: 240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKL 294
             CKF L+MLKMAMVY+AS ALI+ELEKR GMMLE+AN NDLLIPNYK+ED  K+
Sbjct: 326 APCKFLLKMLKMAMVYSASQALIAELEKRAGMMLENANVNDLLIPNYKSEDQGKM 380

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093756|ref|XP_002309978.1| predicted protein [Populus trichocarpa] gi|222852881|gb|EEE90428.1| predicted protein [Populus trichocarpa]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/295 (74%), Positives = 252/295 (85%), Gaps = 5/295 (1%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI RLELQPSISN GY+LKLENFPGGSE F+IILKFCYGLP+  NP+N APLRCA
Sbjct: 35  VSKCGYIGRLELQPSISNFGYELKLENFPGGSEAFKIILKFCYGLPLDLNPSNSAPLRCA 94

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+MSEE +DGNLISKTEAFLT V+LSSWK+TITVLKSC+ LSPWAENLQIVRRCCDS
Sbjct: 95  SEFLEMSEEIDDGNLISKTEAFLTFVVLSSWKDTITVLKSCETLSPWAENLQIVRRCCDS 154

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKA R+NS    + N +GW FDDVA+L IDHFMRIIT I+ +G KPEIIGKCIM YA 
Sbjct: 155 IAWKAPRDNS----MVNDEGWCFDDVASLRIDHFMRIITAIRARGAKPEIIGKCIMRYAD 210

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQ-KEQRTIIENLVNLLPHQDEG 239
           +WLPGMD ELEGLRGYGYGK+ELQFSIL   KE+  +   KEQ++IIE+LV++LP Q E 
Sbjct: 211 RWLPGMDAELEGLRGYGYGKNELQFSILIGRKEDEGIEHSKEQKSIIESLVSILPSQPEA 270

Query: 240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKL 294
             CKF L+MLKMAMVY+AS ALI+ELEKR GMMLE+AN NDLLIPNYK+ED  K+
Sbjct: 271 APCKFLLKMLKMAMVYSASQALIAELEKRAGMMLENANVNDLLIPNYKSEDQGKM 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081144|ref|XP_002306309.1| predicted protein [Populus trichocarpa] gi|222855758|gb|EEE93305.1| predicted protein [Populus trichocarpa]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 223/295 (75%), Positives = 251/295 (85%), Gaps = 1/295 (0%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SK  YI RLE+QPSISN GY+LKLENFPGG E FEIILKFCYGL +  NP+NIAPLRCA
Sbjct: 27  VSKSSYIGRLEIQPSISNFGYELKLENFPGGPEAFEIILKFCYGLTLDLNPSNIAPLRCA 86

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+MSEE +DGNLISKTEAFLT V+LSSWK+TITVLKSC+ LSPWAENLQIVRRCCDS
Sbjct: 87  SEFLEMSEELDDGNLISKTEAFLTFVVLSSWKDTITVLKSCETLSPWAENLQIVRRCCDS 146

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKASR+NST  D  N +G WFDDVA+L IDHFMRIIT I  +GTKPEIIGKCIM YA+
Sbjct: 147 IAWKASRDNSTIGDTVNDEGCWFDDVASLRIDHFMRIITAIGARGTKPEIIGKCIMQYAE 206

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQ-KEQRTIIENLVNLLPHQDEG 239
           +WLPGMDVELEG RGYGYGK+ELQFSIL   KE+  +   +EQ++IIE+LV++LP Q   
Sbjct: 207 RWLPGMDVELEGPRGYGYGKNELQFSILIGRKEDEGIEHSQEQKSIIESLVSILPPQPGA 266

Query: 240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKL 294
           V CKF L+MLKMAMVY+AS ALISELEKRVGMMLE+AN NDLLIPNYK ED  K 
Sbjct: 267 VPCKFLLKMLKMAMVYSASQALISELEKRVGMMLENANVNDLLIPNYKREDQGKF 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497198|ref|XP_002262774.2| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like, partial [Vitis vinifera]

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/295 (72%), Positives = 254/295 (86%), Gaps = 1/295 (0%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +S+CGYI+++ELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLP+  NPNN A LRCA
Sbjct: 75  VSRCGYISQIELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPVDLNPNNAASLRCA 134

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+M+EE ++GNLISKTE FLT V+LSSW+++ITVLKSC+NLSPWAENLQIVRRCCDS
Sbjct: 135 SEFLEMTEELDEGNLISKTEVFLTFVVLSSWRDSITVLKSCENLSPWAENLQIVRRCCDS 194

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKAS++NSTT +  + + WWFDDVATL IDHFMRI+TT + KG KPEIIG CIMHYA+
Sbjct: 195 IAWKASQDNSTTGETISEEHWWFDDVATLRIDHFMRIMTTARAKGLKPEIIGSCIMHYAE 254

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQ-KEQRTIIENLVNLLPHQDEG 239
           KWLPGMDV LEG R +G GK+ELQ SIL+  ++E  VG  KE + IIE+LV++LP + E 
Sbjct: 255 KWLPGMDVALEGPRAFGCGKNELQLSILSGRRQEGGVGHNKELKMIIESLVSILPPEKEA 314

Query: 240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKL 294
           VSCKF LQMLKM++VY+A+  L+SELEKRVGM+L+DAN NDLLIP Y+N D  KL
Sbjct: 315 VSCKFLLQMLKMSVVYSATQVLVSELEKRVGMVLQDANVNDLLIPTYRNGDQGKL 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497580|ref|XP_003635572.1| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like, partial [Vitis vinifera]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/295 (71%), Positives = 254/295 (86%), Gaps = 1/295 (0%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +S+CGYI+++ELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLP+  NPNN A LRCA
Sbjct: 44  VSRCGYISQIELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPVDLNPNNAASLRCA 103

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+M+EE ++GNLISKTEAFLT V+LSSW+++ITVLKSC+NLSPWAENLQI+RRCCDS
Sbjct: 104 SEFLEMTEELDEGNLISKTEAFLTFVVLSSWRDSITVLKSCENLSPWAENLQIIRRCCDS 163

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKAS++NSTT +  + +GWWFDDVATL IDHF RI+T  + KG KPEIIG CIMHYA+
Sbjct: 164 IAWKASQDNSTTGETISEEGWWFDDVATLRIDHFTRIMTAARAKGLKPEIIGSCIMHYAE 223

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQ-KEQRTIIENLVNLLPHQDEG 239
           KWLPGMDV LEG R +GYGK+ELQ SIL+  ++E  VG  KE + IIE+LV++LP + E 
Sbjct: 224 KWLPGMDVALEGPRAFGYGKNELQLSILSGRRQEGGVGHNKELKMIIESLVSILPPEKEA 283

Query: 240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKL 294
           VSCKF L MLKM++VY+A+  L+SELEKRVGM+L+DAN NDLLIP Y+N D  KL
Sbjct: 284 VSCKFLLWMLKMSVVYSATQVLVSELEKRVGMVLQDANVNDLLIPTYRNGDQGKL 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528467|ref|XP_003532824.1| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/294 (71%), Positives = 247/294 (84%), Gaps = 1/294 (0%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI RLE+QP ISN G  L LENFPGGSETFE ILKFCYGLPI F+P+NIA LRCA
Sbjct: 70  ISKCGYIGRLEIQPLISNSGNVLNLENFPGGSETFETILKFCYGLPIDFSPDNIAALRCA 129

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+M+EE EDGNLISK+EAFLT V+LSSWK+TITVLKS +NLSPWAENLQIVRRCCDS
Sbjct: 130 SEFLEMTEELEDGNLISKSEAFLTFVVLSSWKDTITVLKSSENLSPWAENLQIVRRCCDS 189

Query: 121 IAWKASRENSTTEDIA-NRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
           IAWKAS++  T+ED A N++ WWF+DVA   IDHFMRII+ I+ KGTKPE IGKCIM YA
Sbjct: 190 IAWKASKDELTSEDAAPNQESWWFNDVAAFRIDHFMRIISAIRAKGTKPETIGKCIMQYA 249

Query: 180 KKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEG 239
           K+WLPGM+VELEGLRGYG+ K  LQFSI +  K+E S   KEQRTIIE+L++++P Q + 
Sbjct: 250 KRWLPGMEVELEGLRGYGHEKCNLQFSIFSGKKKESSGNSKEQRTIIESLISIIPPQQDA 309

Query: 240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAK 293
           VSCKF LQ+LKMAM+Y+ SPAL ++LEKRV ++LEDA  +DLLIP Y+N D  K
Sbjct: 310 VSCKFMLQLLKMAMMYSVSPALTTDLEKRVSLVLEDAEVSDLLIPRYQNGDQGK 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511091|ref|XP_003524263.1| PREDICTED: putative BTB/POZ domain-containing protein DOT3-like [Glycine max]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/294 (70%), Positives = 248/294 (84%), Gaps = 1/294 (0%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +SKCGYI +LE+QP ISN G  LKLENFPGGSETFE ILKFCYGLPI F+P+NIA LRCA
Sbjct: 74  ISKCGYIGQLEIQPLISNSGNVLKLENFPGGSETFETILKFCYGLPIDFSPDNIAALRCA 133

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+M+EE EDGNLISK+EAFLT V+LSSWK+TITVLKSC+NLSPWAENLQIVRRCCDS
Sbjct: 134 SEFLEMTEELEDGNLISKSEAFLTFVVLSSWKDTITVLKSCENLSPWAENLQIVRRCCDS 193

Query: 121 IAWKASRENSTTEDIA-NRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
           IAWKAS++  T+ED   N++ WWF+DVA   IDHFM+II+ I+ KGTKPE IGKCI+ YA
Sbjct: 194 IAWKASKDELTSEDATPNQESWWFNDVAAFRIDHFMQIISAIRAKGTKPETIGKCIIQYA 253

Query: 180 KKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEG 239
           K+WLPGM+VELEGLRGYG+ K  LQFSI +  K+E S   KEQ+TIIE+L++++P Q + 
Sbjct: 254 KRWLPGMEVELEGLRGYGHEKCNLQFSIFSGKKKESSGHSKEQKTIIESLISIIPPQQDA 313

Query: 240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAK 293
           VSCKF LQMLKMAM+Y+ SPAL ++LEKRV ++LEDA  +DLLIP Y+N D  K
Sbjct: 314 VSCKFMLQMLKMAMMYSVSPALTTDLEKRVSLVLEDAEVSDLLIPRYQNGDQGK 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084654|emb|CBI25777.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/294 (68%), Positives = 237/294 (80%), Gaps = 25/294 (8%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +S+CGYI+++ELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLP+  NPNN A LRCA
Sbjct: 75  VSRCGYISQIELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPVDLNPNNAASLRCA 134

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+M+EE ++GNLISKTE FLT V+LSSW+++ITVLKSC+NLSPWAENLQIVRRCCDS
Sbjct: 135 SEFLEMTEELDEGNLISKTEVFLTFVVLSSWRDSITVLKSCENLSPWAENLQIVRRCCDS 194

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKAS++NSTT +  + + WWFDDVATL IDHFMRI+TT + KG KPEIIG CIMHYA+
Sbjct: 195 IAWKASQDNSTTGETISEEHWWFDDVATLRIDHFMRIMTTARAKGLKPEIIGSCIMHYAE 254

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGV 240
           KWLPGMD   EG  G G+                     KE + IIE+LV++LP + E V
Sbjct: 255 KWLPGMD---EG--GVGHN--------------------KELKMIIESLVSILPPEKEAV 289

Query: 241 SCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKL 294
           SCKF LQMLKM++VY+A+  L+SELEKRVGM+L+DAN NDLLIP Y+N D  KL
Sbjct: 290 SCKFLLQMLKMSVVYSATQVLVSELEKRVGMVLQDANVNDLLIPTYRNGDQGKL 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090702|emb|CBI41104.3| unnamed protein product [Vitis vinifera]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/294 (67%), Positives = 236/294 (80%), Gaps = 25/294 (8%)

Query: 1   MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
           +S+CGYI+++ELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLP+  NPNN A LRCA
Sbjct: 45  VSRCGYISQIELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPVDLNPNNAASLRCA 104

Query: 61  SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
           SEFL+M+EE ++GNLISKTEAFLT V+LSSW+++ITVLKSC+NLSPWAENLQI+RRCCDS
Sbjct: 105 SEFLEMTEELDEGNLISKTEAFLTFVVLSSWRDSITVLKSCENLSPWAENLQIIRRCCDS 164

Query: 121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
           IAWKAS++NSTT +  + +GWWFDDVATL IDHF RI+T  + KG KPEIIG CIMHYA+
Sbjct: 165 IAWKASQDNSTTGETISEEGWWFDDVATLRIDHFTRIMTAARAKGLKPEIIGSCIMHYAE 224

Query: 181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGV 240
           KWLPGMD   EG  G G+                     KE + IIE+LV++LP + E V
Sbjct: 225 KWLPGMD---EG--GVGHN--------------------KELKMIIESLVSILPPEKEAV 259

Query: 241 SCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNEDHAKL 294
           SCKF L MLKM++VY+A+  L+SELEKRVGM+L+DAN NDLLIP Y+N D  KL
Sbjct: 260 SCKFLLWMLKMSVVYSATQVLVSELEKRVGMVLQDANVNDLLIPTYRNGDQGKL 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2145387	607	DOT3 "DEFECTIVELY ORGANIZED TR	0.979	0.476	0.627	3.5e-98
TAIR|locus:2173418	746	NPH3 "NON-PHOTOTROPIC HYPOCOTY	0.349	0.138	0.640	3.6e-68
TAIR|locus:2083103	526	AT3G49970 [Arabidopsis thalian	0.952	0.534	0.368	1.2e-44
TAIR|locus:2028160	665	AT1G30440 [Arabidopsis thalian	0.359	0.159	0.433	2.1e-44
TAIR|locus:2200286	631	AT1G67900 [Arabidopsis thalian	0.928	0.434	0.358	3.5e-43
TAIR|locus:2173204	591	AT5G13600 [Arabidopsis thalian	0.935	0.467	0.371	1.7e-41
TAIR|locus:504954965	604	AT5G67385 [Arabidopsis thalian	0.928	0.453	0.346	1.7e-41
TAIR|locus:2082132	651	AT3G44820 [Arabidopsis thalian	0.569	0.258	0.302	7.5e-41
TAIR|locus:2143558	592	AT5G03250 [Arabidopsis thalian	0.908	0.452	0.339	1.8e-39
TAIR|locus:2064357	593	RPT2 "ROOT PHOTOTROPISM 2" [Ar	0.918	0.456	0.344	2.3e-39

TAIR|locus:2145387 DOT3 "DEFECTIVELY ORGANIZED TRIBUTARIES 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 184/293 (62%), Positives = 237/293 (80%)

Query:     1 MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
             +SKCGYI+ +EL+PS S  GY LKLENFPGG++TFE ILKFCY LP+  NP N+APLRCA
Sbjct:    71 ISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILKFCYNLPLDLNPLNVAPLRCA 130

Query:    61 SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
             SE+L M+EE+E GNLISKTEAF+T V+L+SW++T+TVL+SC NLSPWAENLQIVRRCCD 
Sbjct:   131 SEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTVLRSCTNLSPWAENLQIVRRCCDL 190

Query:   121 IAWKASRENSTTEDIANR-QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
             +AWKA  +N+  ED+ +R +   ++D+ATL IDHFMR+ITT+K +  KP+I GK IM YA
Sbjct:   191 LAWKACNDNNIPEDVVDRNERCLYNDIATLDIDHFMRVITTMKARRAKPQITGKIIMKYA 250

Query:   180 KKWLPGMDVELEGLRGYGYGKHELQFSILNAGK--EEVSVGQKEQRTIIENLVNLLPHQD 237
               +LP ++ +LEG++GYG GK+ELQFS+ N G+  E  S+G +E +  IE+LV++LP Q 
Sbjct:   251 DNFLPVINDDLEGIKGYGLGKNELQFSV-NRGRMEESNSLGCQEHKETIESLVSVLPPQS 309

Query:   238 EGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNED 290
               VSC F L+MLK ++VY+ASPALIS+LEKRVGM LEDAN  DLLIPN+KNE+
Sbjct:   310 GAVSCHFLLRMLKTSIVYSASPALISDLEKRVGMALEDANVCDLLIPNFKNEE 362

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

GO:0080022 "primary root development" evidence=IMP

TAIR|locus:2173418 NPH3 "NON-PHOTOTROPIC HYPOCOTYL 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 3.6e-68, Sum P(3) = 3.6e-68
 Identities = 66/103 (64%), Positives = 85/103 (82%)

Query:    23 LKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAF 82
             L L++ PGG E FE+  KFCYG+P+     NI+ LRCA+E+L+M+E+ E+GNLI KTEAF
Sbjct:    94 LILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTEAF 153

Query:    83 LTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKA 125
             L+ V+LSSW+++I VLKSC+ LSPWAENLQIVRRC +SIAWKA
Sbjct:   154 LSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKA 196

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA;NAS

GO:0009416 "response to light stimulus" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009785 "blue light signaling pathway" evidence=IGI;IPI

GO:0016567 "protein ubiquitination" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009638 "phototropism" evidence=IMP

TAIR|locus:2083103 AT3G49970 [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 109/296 (36%), Positives = 171/296 (57%)

Query:     1 MSKCGYIARLELQPSI-SNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRC 59
             +SKCG+I +L  + S  SN+   +++ +FPGG+E FE+++KFCY +    N  NIA L C
Sbjct:    15 VSKCGFIKKLASESSNDSNI---IRIPDFPGGAEGFELVIKFCYDISFEINTENIAMLLC 71

Query:    60 ASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCD 119
             A+E+L+M+EE+   NL+   E +L  VIL S  +++ VL+  ++L P AE +++V RC D
Sbjct:    72 AAEYLEMTEEHSVENLVETIEVYLNEVILKSLSKSVKVLQKSQDLLPIAERVRLVDRCID 131

Query:   120 SIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
             SIA+   +E+ + EDI +   WW DD+A L ID F R++  +  +G K   +G  +  YA
Sbjct:   132 SIAYAICQESQSNEDIVD---WWADDLAVLKIDMFRRVLVAMIARGFKRYSLGPVLKLYA 188

Query:   180 KKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEG 239
             +K L G+      +R   +   +       A K E    + E+R I+E +V+LLP +   
Sbjct:   189 EKALRGL------VRFLNFLTEQCDIFGKEAKKMEAEQ-EHEKRLILETIVSLLPRERNS 241

Query:   240 VSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYK-NEDHAKL 294
             VS  F   +L+ A+    + A   +LEKR+G+ L  A  +DLLIP Y  N D+  L
Sbjct:   242 VSVSFLSILLRAAIYLETTVACRLDLEKRMGLQLRQAVIDDLLIPYYSFNGDNTML 297

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

TAIR|locus:2028160 AT1G30440 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 2.1e-44, Sum P(2) = 2.1e-44
 Identities = 46/106 (43%), Positives = 75/106 (70%)

Query:    23 LKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAF 82
             +++ + PGG +TFE++ KFCYG+ +    +N+  LRCA+E L+M+EE+ +GNLIS+TE F
Sbjct:    70 IEISDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEGNLISQTETF 129

Query:    83 LTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRE 128
                V+L SWK++I  L SC  +  +A+ L I ++C +S+A +AS +
Sbjct:   130 FNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRASTD 175

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IEA;ISS

TAIR|locus:2200286 AT1G67900 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 111/310 (35%), Positives = 170/310 (54%)

Query:     1 MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
             +SKC  + R+    S  ++   ++L  FPGG E FE+  KFCYG+ I  +  NI   RCA
Sbjct:    47 LSKCLRLQRM-CSESPESI---IQLPEFPGGVEAFELCAKFCYGITITISAYNIVAARCA 102

Query:    61 SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
             +E+L MSEE E GNL+ K E F    IL+ W+++I  L++ K    W+E+L I  RC ++
Sbjct:   103 AEYLQMSEEVEKGNLVYKLEVFFNSCILNGWRDSIVTLQTTKAFPLWSEDLAITSRCIEA 162

Query:   121 IAWKA-------------SR-----ENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIK 162
             IA K              SR     + S+    A+ +GWW +D+A LGID + R +  IK
Sbjct:   163 IASKVLSHPSKVSLSHSHSRRVRDDDMSSNRAAASSRGWWAEDIAELGIDLYWRTMIAIK 222

Query:   163 VKGTKP-EIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKE 221
               G  P  +IG  +  YA KWLP +    + ++     K E      ++  +  +    +
Sbjct:   223 SGGKVPASLIGDALRVYASKWLPTLQRNRKVVK-----KKE------DSDSDSDTDTSSK 271

Query:   222 QRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDL 281
              R ++E++++LLP +   VSC F L++LK A + NAS +   EL +RV + LE+A  +DL
Sbjct:   272 HRLLLESIISLLPAEKGAVSCSFLLKLLKAANILNASTSSKMELARRVALQLEEATVSDL 331

Query:   282 LIP--NYKNE 289
             LIP  +YK+E
Sbjct:   332 LIPPMSYKSE 341

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

TAIR|locus:2173204 AT5G13600 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 116/312 (37%), Positives = 168/312 (53%)

Query:     1 MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
             +S+ GY+  L  + S +      +L + PGG ETF ++ KFCYG+ I   P N   LRCA
Sbjct:    47 LSRSGYLETLFSKASETTCV--AQLHDIPGGPETFLLVAKFCYGVRIEVTPENAVSLRCA 104

Query:    61 SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVL-KSCK-NLSPWAENLQIVRRCC 118
             +E+L MSE Y D NLI  TE+FL   +  +W+++I  L KSC+  + P AE L IV RC 
Sbjct:   105 AEYLQMSENYGDANLIYLTESFLNDHVFVNWEDSIKALEKSCEPKVLPLAEELHIVSRCI 164

Query:   119 DSIAWKASRENST--------------TEDI--------ANRQGWWFDDVAT-LGIDHFM 155
              S+A KA  E++T              T  I        A  + WWF+DV++ L +  + 
Sbjct:   165 GSLAMKACAEDNTSFFNWPISLPEGTTTTTIYWNGIQTKATSENWWFNDVSSFLDLPMYK 224

Query:   156 RIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEV 215
             R I T++ +G    II   + HYAK+ LP +       R  G    E      N G +++
Sbjct:   225 RFIKTVESRGVNAGIIAASVTHYAKRNLPLLGCS----RKSGSPSEEGT----NYG-DDM 275

Query:   216 SVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLED 275
                 +EQR+++E +V LLP +    S KF L++L+ +MV +AS      LEKR+GM L++
Sbjct:   276 YYSHEEQRSLLEEIVELLPGKKCVTSTKFLLRLLRTSMVLHASQVTQETLEKRIGMQLDE 335

Query:   276 ANANDLLIPNYK 287
             A   DLLIPN K
Sbjct:   336 AALEDLLIPNMK 347

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IDA

TAIR|locus:504954965 AT5G67385 [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 107/309 (34%), Positives = 169/309 (54%)

Query:     1 MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
             MSKCG+I +L  + S  +    +K+ + PGGSE FE+  KFCYG+    +  NIA LRCA
Sbjct:    46 MSKCGFIKKLVSESSKDSDSTVIKIPDIPGGSEAFELAAKFCYGINFDMSTENIAMLRCA 105

Query:    61 SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
             +E+L+M+EE+   NL+ + EA+L  V L S   +ITVL   + L P AE +++V RC D+
Sbjct:   106 AEYLEMTEEHSVENLVVRAEAYLNEVALKSLSSSITVLHKSEKLLPIAERVKLVSRCIDA 165

Query:   121 IAWKASRE---------NSTTEDIANRQ-------GWWFDDVATLGIDHFMRIITTIKVK 164
             IA+   +E         NS   ++  +Q        WW +D+  L ID F R++  +  +
Sbjct:   166 IAYMTCQESHFCSPSSSNSGNNEVVVQQQSKQPVVDWWAEDLTVLRIDSFQRVLIAMMAR 225

Query:   165 GTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRT 224
             G K   +G  +M YA+K L G+++       +G G  +++       K+E      E+R 
Sbjct:   226 GFKQYGLGPVLMLYAQKSLRGLEI-------FGKGMKKIE------PKQE-----HEKRV 267

Query:   225 IIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIP 284
             I+E +V+LLP +   +S  F   +L+ A+    + A   +LE R+G+ L  A  +DLLIP
Sbjct:   268 ILETIVSLLPREKNAMSVSFLSMLLRAAIFLETTVACRLDLENRMGLQLGQAVLDDLLIP 327

Query:   285 NYK-NEDHA 292
             +Y    DH+
Sbjct:   328 SYSFTGDHS 336

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

TAIR|locus:2082132 AT3G44820 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 7.5e-41, Sum P(2) = 7.5e-41
 Identities = 52/172 (30%), Positives = 93/172 (54%)

Query:   120 SIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYA 179
             SI W     N+     ++   WW++D++ L +D F R+I T++ KG + E +   +M+YA
Sbjct:   193 SILWNGI--NTGARMRSSGSDWWYEDISYLSVDLFKRLIKTMETKGIRAESLAGAMMYYA 250

Query:   180 KKWLPGMDVELEGLRGYGYGKHEL-QFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDE 238
             +K+LPG+     G       +  +  F++  A     S+   +Q  ++E +++LLP +  
Sbjct:   251 RKYLPGLGRWQSGTSDSSKSRRRVVSFNLAKASSPS-SMPPLDQIALLETILSLLPEKRG 309

Query:   239 GVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNYKNED 290
                CKF L +L++A +       + +LEKR+GM LE A  ++LLI NY + +
Sbjct:   310 RSFCKFLLGLLRVAFILGVDGNCVKKLEKRIGMQLELATLDNLLILNYSDSE 361

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

TAIR|locus:2143558 AT5G03250 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 108/318 (33%), Positives = 175/318 (55%)

Query:     1 MSKCGYIARLELQPSISN-LGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRC 59
             +S+ G + RL  + S  +  G  L L+  PGG +TFE++ KFCYG+ I     N+  LRC
Sbjct:    47 LSRSGLLERLIEESSTDDGSGCVLSLDEIPGGGKTFELVTKFCYGVKIELTAFNVVSLRC 106

Query:    60 ASEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCD 119
             A+E+L+M++ Y +GNL+  TE FL  V   +W ++I  L++C+ +  +AE+L I+ RC D
Sbjct:   107 AAEYLEMTDNYGEGNLVGMTETFLNEVF-GNWTDSIKALQTCEEVIDYAEDLHIISRCVD 165

Query:   120 SIAWKASRE------------NST----TEDIANR---------------QGWWFDDVAT 148
             S+A KA  +            N+T    TED ++                + WWFDD + 
Sbjct:   166 SLAVKACADPSLFNWPVGGGKNATSGQNTEDESHLWNGISASGKMLQHTGEDWWFDDASF 225

Query:   149 LGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSIL 208
             L +  F R+IT I+ +G K E I   +M+Y +K +P M+ ++            +   ++
Sbjct:   226 LSLPLFKRLITAIEARGMKLENIAMAVMYYTRKHVPLMNRQVN-----------MDEQVI 274

Query:   209 NAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVS-CKFFLQMLKMAMVYNASPALISELEK 267
                 E  +  +++Q+T +E +V LLP + +GV+  KF L++L+ AMV +AS +    LE+
Sbjct:   275 ----ETPNPSEEDQKTCLEEIVGLLPSK-KGVNPTKFLLRLLQTAMVLHASQSSRENLER 329

Query:   268 RVGMMLEDANANDLLIPN 285
             R+G  L+ A   DLLIPN
Sbjct:   330 RIGNQLDQAALVDLLIPN 347

GO:0004871 "signal transducer activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA;ISS

TAIR|locus:2064357 RPT2 "ROOT PHOTOTROPISM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 99/287 (34%), Positives = 159/287 (55%)

Query:     1 MSKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCA 60
             ++K  YI +L ++   S++   + L + PGG E FE   KFCYG+       N+A L CA
Sbjct:    51 VAKSNYIRKLIMESKDSDVTR-INLSDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCA 109

Query:    61 SEFLDMSEEYEDGNLISKTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDS 120
             +EFL M+++Y D NL  +T+ FL+ V LSS    I VLKSC+ L P + +L IVRRC D 
Sbjct:   110 AEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDV 169

Query:   121 IAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAK 180
             +  KA   N           WW +++  L +D F  +++++K +G KP  +   I+ Y +
Sbjct:   170 VGAKAC--NEAMFPCRTPPNWWTEELCILDVDFFSDVVSSMKQRGVKPSSLASAIITYTE 227

Query:   181 KWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGV 240
             K L  +  +  G RG  Y          + G  E S  + +QR +++++V+LLP  D+G+
Sbjct:   228 KSLRDLVRDHSG-RGVKYS---------DPGDNE-SDERSQQRDLVQSIVSLLP-SDKGL 275

Query:   241 -SCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPNY 286
                 F   +L+ A+  + S    +ELEKR+ ++LE  + +DLLIP++
Sbjct:   276 FPVNFLCSLLRCAVFLDTSLTCKNELEKRISVVLEHVSVDDLLIPSF 322

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0009416 "response to light stimulus" evidence=IEA

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0009638 "phototropism" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009954 "proximal/distal pattern formation" evidence=RCA

GO:0010227 "floral organ abscission" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.VII.1805.1 hypothetical protein (544 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
pfam03000	249	pfam03000, NPH3, NPH3 family	3e-50

>gnl|CDD|217312 pfam03000, NPH3, NPH3 family

 Score =  165 bits (421), Expect = 3e-50
 Identities = 59/152 (38%), Positives = 89/152 (58%), Gaps = 23/152 (15%)

Query: 141 WWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGK 200
           WWF+D++ L ID F R+IT +K +G KPE+IG+ +MHYAKKWLPG               
Sbjct: 3   WWFEDLSELSIDLFKRVITAMKSRGVKPEVIGEALMHYAKKWLPG--------------- 47

Query: 201 HELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPA 260
                  L+         ++EQR ++E +V+LLP +   VSC F  ++L+ A++  AS +
Sbjct: 48  -------LSRSGSSEEDSEEEQRALLETIVSLLPSEKGSVSCSFLFKLLRAAIILGASES 100

Query: 261 LISELEKRVGMMLEDANANDLLIPN-YKNEDH 291
              ELE+R+G+ L+ A  +DLLIP+ Y  E+ 
Sbjct: 101 CREELERRIGLQLDQATLDDLLIPSGYSGEET 132

Phototropism of Arabidopsis thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase. Mutations in NPH3 disrupt early signaling occurring downstream of the NPH1 photoreceptor. The NPH3 gene encodes a NPH1-interacting protein. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay. Length = 249

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
PF03000	258	NPH3: NPH3 family; InterPro: IPR004249 The RPT2 pr	100.0
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	98.3
PHA03098	534	kelch-like protein; Provisional	98.24
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	98.13
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.83
PHA02713	557	hypothetical protein; Provisional	97.49
PHA02790	480	Kelch-like protein; Provisional	97.46
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	94.54
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	85.93
KOG2075	521	consensus Topoisomerase TOP1-interacting protein B	84.24

>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana

Probab=100.00  E-value=8.3e-46  Score=342.84  Aligned_cols=132  Identities=45%  Similarity=0.879  Sum_probs=119.2

Q ss_pred             CCchhhhhcccChHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccc
Q 022577          139 QGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVG  218 (295)
Q Consensus       139 ~dWW~eDl~~L~~~~f~rvi~am~~~g~~~~~I~~~L~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (295)
                      +|||||||+.|++++|+|||.+|+++||+|++||++|+|||+||+|+..++.......               .......
T Consensus         1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~---------------~~~~~~~   65 (258)
T PF03000_consen    1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSS---------------AESSTSS   65 (258)
T ss_pred             CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccccccccc---------------ccccchh
Confidence            5899999999999999999999999999999999999999999999986542111110               2233456


Q ss_pred             hhhhHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccCccccccccccC
Q 022577          219 QKEQRTIIENLVNLLPHQDEGVSCKFFLQMLKMAMVYNASPALISELEKRVGMMLEDANANDLLIPN  285 (295)
Q Consensus       219 ~~~qr~llEtiv~LLP~ek~svsc~FLf~LLR~a~~l~as~~cr~~LE~rIg~QLe~AtLdDLLIPs  285 (295)
                      +.+||.+||+||+|||.||+++||+|||+|||+|+++|||++||.+||+|||.|||||||||||||+
T Consensus        66 ~~~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~  132 (258)
T PF03000_consen   66 ENEQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS  132 (258)
T ss_pred             HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC
Confidence            8899999999999999999999999999999999999999999999999999999999999999999

The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=98.30  E-value=1.4e-06  Score=68.70  Aligned_cols=76  Identities=24%  Similarity=0.329  Sum_probs=66.4

Q ss_pred             CcccHHHHHHcCCC-CCCCccceeecCCCCChHHHHHHHHHhcCCccccC-CcchHHHhhhhhhhcCccccCCCchHHHH
Q 022577            2 SKCGYIARLELQPS-ISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFN-PNNIAPLRCASEFLDMSEEYEDGNLISKT   79 (295)
Q Consensus         2 SrSg~l~rl~~~~~-~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt-~~NVa~LrCAAe~LeMtE~~~~~NL~~~t   79 (295)
                      ++|.||++++.... ......+|.+++++  +++|+.+.+|||+.++.++ ..|+..+...|++++|.+      |...+
T Consensus        32 ~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~------L~~~~  103 (111)
T PF00651_consen   32 ARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPE------LKKAC  103 (111)
T ss_dssp             HHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHH------HHHHH
T ss_pred             ccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHH------HHHHH
Confidence            57999999999873 22233478888887  8899999999999999998 999999999999999997      99999


Q ss_pred             HHHhhh
Q 022577           80 EAFLTL   85 (295)
Q Consensus        80 e~fL~~   85 (295)
                      +.||.+
T Consensus       104 ~~~l~~  109 (111)
T PF00651_consen  104 EKFLQE  109 (111)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999976

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA03098 kelch-like protein; Provisional

Probab=98.24  E-value=9.2e-06  Score=81.55  Aligned_cols=146  Identities=14%  Similarity=0.235  Sum_probs=104.8

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.|++.|+...-.   ..+|+|.+   -+++|+.+.+|-|.++++|+..||..|--||.+|+|.+      |....+.
T Consensus        32 a~S~yF~~mf~~~~~---~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~~   99 (534)
T PHA03098         32 SSSEYFKKMFKNNFK---ENEINLNI---DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCIN   99 (534)
T ss_pred             hhhHHHHHHHhCCCC---CceEEecC---CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence            579999999975332   35778776   78999999999999999999999999999999999998      9999999


Q ss_pred             HhhhhhccChHHHHHHHhhhhcccchhhhhh---hHHHHHHHHHHHhccCCccccccccCCCchhhhhcccChHHHHHHH
Q 022577           82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRII  158 (295)
Q Consensus        82 fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~---iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi  158 (295)
                      ||.+.+-         ...|-.++..|+..+   +.+.|.+-|+..... -.      .     -+|...|+.+..+.++
T Consensus       100 ~l~~~l~---------~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~-v~------~-----~~~f~~l~~~~l~~ll  158 (534)
T PHA03098        100 YIIKIID---------DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIEL-IY------N-----DPDFIYLSKNELIKIL  158 (534)
T ss_pred             HHHHhCC---------HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-Hh------c-----CchhhcCCHHHHHHHh
Confidence            9987542         234555555666544   666777766654311 00      0     1567788877766664


Q ss_pred             HHHHHcCCCchhHHHHHHHHHH
Q 022577          159 TTIKVKGTKPEIIGKCIMHYAK  180 (295)
Q Consensus       159 ~am~~~g~~~~~I~~~L~~Ya~  180 (295)
                      ..=.-.-.+++.+.++++.+++
T Consensus       159 ~~~~L~v~~E~~v~~av~~W~~  180 (534)
T PHA03098        159 SDDKLNVSSEDVVLEIIIKWLT  180 (534)
T ss_pred             cCCCcCcCCHHHHHHHHHHHHh
Confidence            4311111256778888887775

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=98.13  E-value=3.7e-06  Score=62.17  Aligned_cols=65  Identities=17%  Similarity=0.264  Sum_probs=54.5

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCcc
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE   68 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE   68 (295)
                      ++|.++++++...........+.+.|  ..+++|+.+-+|+|+.++.+++.|+..+..+|+|++|.+
T Consensus        20 ~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~   84 (90)
T smart00225       20 ACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG   84 (90)
T ss_pred             hcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence            46899999998654322344677765  579999999999999999999999999999999999986

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.83  E-value=0.00032  Score=72.27  Aligned_cols=200  Identities=18%  Similarity=0.293  Sum_probs=134.5

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      +-|.|++-+++..-......+|+|.+  .-++++++...|.|..+++|+-.||-.|--||.+|+|++      +..-.-.
T Consensus        57 a~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~  128 (571)
T KOG4441|consen   57 ACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCE  128 (571)
T ss_pred             hccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHH
Confidence            45889999988533222556899988  789999999999999999999999999999999999998      8888899


Q ss_pred             HhhhhhccC---hHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHhccCCccccccccCCCchhhhhcccChHHHHHHH
Q 022577           82 FLTLVILSS---WKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMRII  158 (295)
Q Consensus        82 fL~~~v~~s---w~dsi~vL~sc~~l~p~ae~l~iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi  158 (295)
                      ||.+.+..+   +--.++-+.+|..|...|.+ .|.+...+     .+.               .||--.|+.+.+..+|
T Consensus       129 fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~-~i~~~F~~-----v~~---------------~eefl~L~~~~l~~ll  187 (571)
T KOG4441|consen  129 FLESQLDPSNCLGIRRFAELHSCTELLEVADE-YILQHFAE-----VSK---------------TEEFLLLSLEELIGLL  187 (571)
T ss_pred             HHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHH-HHHHHHHH-----Hhc---------------cHHhhCCCHHHHHhhc
Confidence            998765433   01112233456666554433 23333222     111               1566668988877777


Q ss_pred             HHHHHcCCCchhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccchhhh-HHHHHHHHHhcCCCC
Q 022577          159 TTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQ-RTIIENLVNLLPHQD  237 (295)
Q Consensus       159 ~am~~~g~~~~~I~~~L~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q-r~llEtiv~LLP~ek  237 (295)
                      ..-.-.--+++.+..+++.+.+.-.+.                                 ...+ -.+++ -|.+ |   
T Consensus       188 ~~d~l~v~~E~~vf~a~~~Wv~~d~~~---------------------------------R~~~~~~ll~-~vr~-~---  229 (571)
T KOG4441|consen  188 SSDDLNVDSEEEVFEAAMRWVKHDFEE---------------------------------REEHLPALLE-AVRL-P---  229 (571)
T ss_pred             cccCCCcCCHHHHHHHHHHHHhcCHhh---------------------------------HHHHHHHHHH-hcCc-c---
Confidence            665555556667677766666421110                                 0000 11222 2222 3   


Q ss_pred             CcccHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 022577          238 EGVSCKFFLQMLKMAMVYNASPALISELEKRV  269 (295)
Q Consensus       238 ~svsc~FLf~LLR~a~~l~as~~cr~~LE~rI  269 (295)
                       .+|-.||.......-.+..+.+||.-|..=.
T Consensus       230 -ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~  260 (571)
T KOG4441|consen  230 -LLPPQFLVEIVESEPLIKRDSACRDLLDEAK  260 (571)
T ss_pred             -CCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence             4888999999999999999999999886533

>PHA02713 hypothetical protein; Provisional

Probab=97.49  E-value=0.0022  Score=65.74  Aligned_cols=148  Identities=14%  Similarity=0.218  Sum_probs=95.6

Q ss_pred             CcccHHHHHHcCCCC-CCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHH
Q 022577            2 SKCGYIARLELQPSI-SNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE   80 (295)
Q Consensus         2 SrSg~l~rl~~~~~~-~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te   80 (295)
                      +.|.||+.|++..-. +....+|+|.++  .+++|+.+.+|.|..+  |++.||-.|--||.+|+|++      |....+
T Consensus        47 a~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~~C~  116 (557)
T PHA02713         47 AGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDD------LVTDCE  116 (557)
T ss_pred             hcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHH------HHHHHH
Confidence            579999999975321 112457889876  5899999999999886  78999999999999999997      999999


Q ss_pred             HHhhhhhccChHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHH---hccCCccccccccCCCchhhhhcccChHHHHHH
Q 022577           81 AFLTLVILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWK---ASRENSTTEDIANRQGWWFDDVATLGIDHFMRI  157 (295)
Q Consensus        81 ~fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~iv~RCidsla~k---a~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rv  157 (295)
                      .||.+.+-.  ..++.+++......    ...+.+.|-+=|+..   ++.+               |+...|+.+....+
T Consensus       117 ~~l~~~l~~--~NCl~i~~~~~~~~----~~~L~~~a~~~i~~~f~~v~~~---------------~ef~~L~~~~l~~l  175 (557)
T PHA02713        117 SYIKDYTNH--DTCIYMYHRLYEMS----HIPIVKYIKRMLMSNIPTLITT---------------DAFKKTVFEILFDI  175 (557)
T ss_pred             HHHHhhCCc--cchHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhCC---------------hhhhhCCHHHHHHH
Confidence            999875532  23333332111110    001222222222211   1221               56677887776666


Q ss_pred             HHHHHHcCC-CchhHHHHHHHHHH
Q 022577          158 ITTIKVKGT-KPEIIGKCIMHYAK  180 (295)
Q Consensus       158 i~am~~~g~-~~~~I~~~L~~Ya~  180 (295)
                      |..=..-.+ +++.|-++++.+.+
T Consensus       176 L~~d~~l~v~~Ee~v~eav~~W~~  199 (557)
T PHA02713        176 ISTNDNVYLYREGYKVTILLKWLE  199 (557)
T ss_pred             hccccccCCCcHHHHHHHHHHHHh
Confidence            654221123 57788888888775

>PHA02790 Kelch-like protein; Provisional

Probab=97.46  E-value=0.0004  Score=69.76  Aligned_cols=95  Identities=12%  Similarity=0.036  Sum_probs=71.5

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      +-|.|||.|++..-.+ ...++.+....-.+++++.+.+|-|.++|+||..||-.+-.||.||+|++      ++.....
T Consensus        42 a~S~YFraMF~~~~~E-s~~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C~~  114 (480)
T PHA02790         42 KLSPYFRTHLRQKYTK-NKDPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTCIN  114 (480)
T ss_pred             hcCHHHHHHhcCCccc-cccceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHHHH
Confidence            4688999998752221 12345553233468999999999999999999999999999999999997      9999999


Q ss_pred             HhhhhhccChHHHHHHHhhhhcccchhhhhh
Q 022577           82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ  112 (295)
Q Consensus        82 fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~  112 (295)
                      ||.+.+-.+         .|-.+..+|+..+
T Consensus       115 fL~~~l~~~---------NCl~i~~~A~~y~  136 (480)
T PHA02790        115 FILRDFRKE---------YCVECYMMGIEYG  136 (480)
T ss_pred             HHHhhCCcc---------hHHHHHHHHHHhC
Confidence            999865432         3444455555444

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=94.54  E-value=0.038  Score=53.39  Aligned_cols=76  Identities=20%  Similarity=0.337  Sum_probs=56.4

Q ss_pred             cccHHHHHHcC-CCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            3 KCGYIARLELQ-PSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         3 rSg~l~rl~~~-~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      .=+|++..+.. .+++....+|.|. +-=.-..||.-.++++|....|||.||+++---++||+|++      |++.+=.
T Consensus        26 ~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------Lve~cl~   98 (317)
T PF11822_consen   26 EMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------LVEECLQ   98 (317)
T ss_pred             hhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------HHHHHHH
Confidence            34677777743 1111122234331 22345799999999999999999999999999999999997      9999999


Q ss_pred             Hhhh
Q 022577           82 FLTL   85 (295)
Q Consensus        82 fL~~   85 (295)
                      |...
T Consensus        99 y~~~  102 (317)
T PF11822_consen   99 YCHD  102 (317)
T ss_pred             HHHH
Confidence            9855

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>smart00512 Skp1 Found in Skp1 protein family

Probab=85.93  E-value=1.3  Score=35.27  Aligned_cols=62  Identities=15%  Similarity=0.269  Sum_probs=39.6

Q ss_pred             cccHHHHHHcCCCCCC-CccceeecCCCCChHHHHHHHHHhcCCc---c----------------ccCCcchHHHhhhhh
Q 022577            3 KCGYIARLELQPSISN-LGYDLKLENFPGGSETFEIILKFCYGLP---I----------------AFNPNNIAPLRCASE   62 (295)
Q Consensus         3 rSg~l~rl~~~~~~~~-~~~~i~l~dfPGG~e~FEl~akFCYg~~---i----------------~lt~~NVa~LrCAAe   62 (295)
                      .|+.++.++.+..... ....|.|++++  +.+++.+.+||+--+   .                .+...++--|-.||.
T Consensus        23 ~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAn  100 (104)
T smart00512       23 QSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAAN  100 (104)
T ss_pred             HHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHH
Confidence            5888999988644321 12356666665  689999999997321   0                044445666667777


Q ss_pred             hhcC
Q 022577           63 FLDM   66 (295)
Q Consensus        63 ~LeM   66 (295)
                      ||++
T Consensus       101 yL~I  104 (104)
T smart00512      101 YLDI  104 (104)
T ss_pred             hhCC
Confidence            7764

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]

Probab=84.24  E-value=7.5  Score=39.84  Aligned_cols=149  Identities=12%  Similarity=0.170  Sum_probs=98.6

Q ss_pred             HHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHHHhhh
Q 022577            6 YIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTL   85 (295)
Q Consensus         6 ~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~fL~~   85 (295)
                      .+-+|..+.-......+|+++|+  -|.+|+---||=|+..+.+.|.||-.+.-+|.=      |-.+-|...+-+|++.
T Consensus       144 VFdaMf~g~~a~~~s~ei~lpdv--epaaFl~~L~flYsdev~~~~dtvi~tl~~AkK------Y~VpaLer~CVkflr~  215 (521)
T KOG2075|consen  144 VFDAMFYGGLAEDASLEIRLPDV--EPAAFLAFLRFLYSDEVKLAADTVITTLYAAKK------YLVPALERQCVKFLRK  215 (521)
T ss_pred             HHHHHhccCcccccCceeecCCc--ChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHH------hhhHHHHHHHHHHHHH
Confidence            34455554332223568889876  689999999999999999999999988777752      2233488888888887


Q ss_pred             hhccChHHHHHHHhhhhcccchhhhhhhHHHHHHHHHHHh--ccCCccccccccCCCchhhhhcccChHHHHHHHHHHHH
Q 022577           86 VILSSWKETITVLKSCKNLSPWAENLQIVRRCCDSIAWKA--SRENSTTEDIANRQGWWFDDVATLGIDHFMRIITTIKV  163 (295)
Q Consensus        86 ~v~~sw~dsi~vL~sc~~l~p~ae~l~iv~RCidsla~ka--~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi~am~~  163 (295)
                      ..+.  +....-|-+|-.++   ++=.+.++|++.|.-..  |.++           =||-|.-.+ .++|+-|++.= -
T Consensus       216 ~l~~--~naf~~L~q~A~lf---~ep~Li~~c~e~id~~~~~al~~-----------EGf~did~~-~dt~~evl~r~-~  277 (521)
T KOG2075|consen  216 NLMA--DNAFLELFQRAKLF---DEPSLISICLEVIDKSFEDALTP-----------EGFCDIDST-RDTYEEVLRRD-T  277 (521)
T ss_pred             hcCC--hHHHHHHHHHHHhh---cCHHHHHHHHHHhhhHHHhhhCc-----------cceeehhhH-HHHHHHHHhhc-c
Confidence            5543  33344444554443   45569999999887443  3333           267776555 77777765421 1


Q ss_pred             cCCCchhHHHHHHHHHH
Q 022577          164 KGTKPEIIGKCIMHYAK  180 (295)
Q Consensus       164 ~g~~~~~I~~~L~~Ya~  180 (295)
                      ..++.-.+-+++..|++
T Consensus       278 l~~~e~~lfeA~lkw~~  294 (521)
T KOG2075|consen  278 LEAREFRLFEAALKWAE  294 (521)
T ss_pred             cchhHHHHHHHHHhhcc
Confidence            23456677777777775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 7e-07
 Identities = 45/283 (15%), Positives = 92/283 (32%), Gaps = 76/283 (26%)

Query: 35  FEI-ILKFCYG--LPIAFNPNNIAPLRCASEFLDM------SEEYED----GNLISKTEA 81
           FE    ++ Y   L + F    +    C  +  DM       EE +      + +S T  
Sbjct: 9   FETGEHQYQYKDILSV-FEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTL- 65

Query: 82  FLTLVILSSWKETI-----TVLKSCKNLSPW-AENLQIVRRCCDSIAWKASRENSTTEDI 135
            L   +LS  +E +      VL+   N   +    ++  +R              T   I
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLR--INY-KFLMSPIKTEQR---------QPSMMTRMYI 113

Query: 136 ANRQGWWFDDVATLGIDHFMRIITTIKVKGTKPEIIGKCIMHYAKKWL----PGMDVELE 191
             R   + D+          ++     V  ++ +   K      ++ L    P  +V ++
Sbjct: 114 EQRDRLYNDN----------QVFAKYNV--SRLQPYLK-----LRQALLELRPAKNVLID 156

Query: 192 GLRGYGYGKHELQFSILNAGKEE---------VSVGQ-KEQRTIIENLVNLLPHQDEGVS 241
           G+   G GK  +   +  + K +         +++       T++E L  LL +Q +   
Sbjct: 157 GVL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNW 213

Query: 242 CKFFLQMLKMAMVYNASPALISELEKRVGMMLEDAN-ANDLLI 283
                    +          I  ++  +  +L+     N LL+
Sbjct: 214 TSRSDHSSNI-------KLRIHSIQAELRRLLKSKPYENCLLV 249

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	98.98
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	98.81
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	98.61
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	98.59
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	98.54
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	98.53
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	98.49
2vpk_A	116	Myoneurin; transcription regulation, transcription	98.45
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	98.43
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	98.39
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	98.37
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	98.37
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	98.35
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	98.34
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	98.33
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	98.24
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	98.1
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	98.06
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	98.04
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	97.98
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	96.84
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	96.82
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	94.93
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	94.66
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	89.14
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	87.19
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	81.78

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=98.98  E-value=7.6e-10  Score=100.74  Aligned_cols=201  Identities=11%  Similarity=0.167  Sum_probs=136.5

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCC----CCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENF----PGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLIS   77 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~df----PGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~   77 (295)
                      ++|.|++.++...-.......|.|+++    ...+++|+.+-+|+|++++.+++.||..+..||.+|+|.+      |..
T Consensus        56 a~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~  129 (279)
T 3i3n_A           56 AATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR------LKE  129 (279)
T ss_dssp             HHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH------HHH
T ss_pred             HcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH------HHH
Confidence            478999999875432224458889876    4578999999999999999999999999999999999986      999


Q ss_pred             HHHHHhhhhhccChHHHHHHHhhhhcccchhhhhh---hHHHHHHHHHHHhccCCccccccccCCCchhhhhcccChHHH
Q 022577           78 KTEAFLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHF  154 (295)
Q Consensus        78 ~te~fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~---iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f  154 (295)
                      ..+.||.+.+-.         ..|-.++.+|+..+   +.++|.+-|......=            +-.++...|+.+..
T Consensus       130 ~c~~~L~~~l~~---------~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v------------~~~~~f~~L~~~~l  188 (279)
T 3i3n_A          130 FCGEFLKKKLHL---------SNCVAIHSLAHMYTLSQLALKAADMIRRNFHKV------------IQDEEFYTLPFHLI  188 (279)
T ss_dssp             HHHHHHHHHCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHH------------TTSSGGGGSCHHHH
T ss_pred             HHHHHHHHcCCc---------chHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH------------hcCcChhcCCHHHH
Confidence            999999885432         23444555666554   7778887776543210            01156678998887


Q ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccchhhhHHHHHHHHHhcC
Q 022577          155 MRIITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLP  234 (295)
Q Consensus       155 ~rvi~am~~~g~~~~~I~~~L~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtiv~LLP  234 (295)
                      ..++..=.-.-.+++.|-.+++.|++...                                    .+.+..+..+...+-
T Consensus       189 ~~lL~~d~L~v~sE~~vf~av~~W~~~~~------------------------------------~~r~~~~~~ll~~VR  232 (279)
T 3i3n_A          189 RDWLSDLEITVDSEEVLFETVLKWVQRNA------------------------------------EERERYFEELFKLLR  232 (279)
T ss_dssp             HHHHTCSSCCCSCHHHHHHHHHHHHHTTH------------------------------------HHHTTTHHHHHTTSC
T ss_pred             HHHhcCcCCCCCCHHHHHHHHHHHHHcCH------------------------------------HHHHHHHHHHHHhcC
Confidence            77654211111246678888887775210                                    011122333333321


Q ss_pred             CCCCcccHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 022577          235 HQDEGVSCKFFLQMLKMAMVYNASPALISELEK  267 (295)
Q Consensus       235 ~ek~svsc~FLf~LLR~a~~l~as~~cr~~LE~  267 (295)
                      .  ..+|..+|..+++..-.+..++.|+.-+..
T Consensus       233 f--~l~~~~~L~~~v~~~~l~~~~~~c~~~l~e  263 (279)
T 3i3n_A          233 L--SQMKPTYLTRHVKPERLVANNEVCVKLVAD  263 (279)
T ss_dssp             G--GGSCHHHHHHTTTTSHHHHTCHHHHHHHHH
T ss_pred             C--CCCCHHHHHHHhhccchhcCCHHHHHHHHH
Confidence            1  458999999999988888999999988764

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=98.81  E-value=2.6e-09  Score=95.86  Aligned_cols=199  Identities=13%  Similarity=0.189  Sum_probs=119.3

Q ss_pred             CcccHHHHHHcCCCC--CCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHH
Q 022577            2 SKCGYIARLELQPSI--SNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKT   79 (295)
Q Consensus         2 SrSg~l~rl~~~~~~--~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~t   79 (295)
                      ++|.|++.++.....  .....+|.++|+  .+++|+.+-+|+|++++.+++.||..+..||.+|+|.+      |....
T Consensus        52 a~S~yF~~mf~~~~~~~e~~~~~i~l~~v--~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~------l~~~c  123 (256)
T 3hve_A           52 AASPYIRTKLNYNPPKDDGSTYKIELEGI--SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTD------LKTLC  123 (256)
T ss_dssp             TTCHHHHHTC-----------CEEECSSC--CHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHH------HHHHH
T ss_pred             HcCHHHHHHhCCCCCcccCCCCeEEeCCC--CHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHH------HHHHH
Confidence            579999999875322  124457888887  48999999999999999999999999999999999997      99999


Q ss_pred             HHHhhhhhccChHHHHHHHhhhhcccchhhhhh---hHHHHHHHHHHHhccCCccccccccCCCchhhhhcccChHHHHH
Q 022577           80 EAFLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWKASRENSTTEDIANRQGWWFDDVATLGIDHFMR  156 (295)
Q Consensus        80 e~fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~---iv~RCidsla~ka~~~~~~~~~~~~~~dWW~eDl~~L~~~~f~r  156 (295)
                      +.||.+.+-.+         .|-.++.+|+..+   +.+.|.+-|......=.            -.++...|+.+....
T Consensus       124 ~~~L~~~l~~~---------n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~------------~~~~f~~L~~~~l~~  182 (256)
T 3hve_A          124 CEFLEGCIAAE---------NCIGIRDFALHYCLHHVHYLATEYLETHFRDVS------------STEEFLELSPQKLKE  182 (256)
T ss_dssp             HHHHHHTCCSS---------TTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT------------TCHHHHSSCHHHHHH
T ss_pred             HHHHHhhCCHh---------hHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHh------------CCcchhcCCHHHHHH
Confidence            99998865322         3444445555544   66777777665432100            126778899988888


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHHHhcCCCccccccccCCCCCCcchhHhhhccCccccccchhhhHHHHHHHHHhcCCC
Q 022577          157 IITTIKVKGTKPEIIGKCIMHYAKKWLPGMDVELEGLRGYGYGKHELQFSILNAGKEEVSVGQKEQRTIIENLVNLLPHQ  236 (295)
Q Consensus       157 vi~am~~~g~~~~~I~~~L~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtiv~LLP~e  236 (295)
                      ++..=.-.-.+++.|-.+++    +|+-.-.   .         ++                ...-..+++.| .+ |  
T Consensus       183 lL~~d~L~v~~E~~v~~av~----~W~~~~~---~---------~R----------------~~~~~~ll~~V-Rf-~--  226 (256)
T 3hve_A          183 VISLEKLNVGNERYVFEAVI----RWIAHDT---E---------IR----------------KVHMKDVMSAL-WV-S--  226 (256)
T ss_dssp             HHHCC-------CTTHHHHT----TTCCC-----C---------CS----------------TTTHHHHHHHH-HH-H--
T ss_pred             HHccCCCCCCCHHHHHHHHH----HHHHcCH---H---------HH----------------HHHHHHHHHhC-CC-C--
Confidence            77532222123556665555    4543210   0         00                00113455554 22 2  


Q ss_pred             CCcccHHHHHHHHHHHHhcCCC-HHHHHHHHH
Q 022577          237 DEGVSCKFFLQMLKMAMVYNAS-PALISELEK  267 (295)
Q Consensus       237 k~svsc~FLf~LLR~a~~l~as-~~cr~~LE~  267 (295)
                        .+|..+|...+..--.+..+ +.||.-|++
T Consensus       227 --~l~~~~l~~~v~~~~l~~~~~~~c~~ll~~  256 (256)
T 3hve_A          227 --GLDSSYLREQMLNEPLVREIVKECSNIPLS  256 (256)
T ss_dssp             --TTCC-CHHHHHHTSTTHHHHHCC-------
T ss_pred             --CCCHHHHHHHHhcChHHHhhHHHHHHHhhC
Confidence              26667888887776667666 578877764

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=98.61  E-value=5.7e-08  Score=75.86  Aligned_cols=76  Identities=13%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.|+++++...-..+. ..|.|+|+  .+++|+.+.+|+|++++.+++.|+..+..+|++++|++      |...++.
T Consensus        33 ~~S~~F~~~f~~~~~e~~-~~i~l~~~--~~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~------L~~~c~~  103 (109)
T 2vkp_A           33 VGSSVFYAMFYGDLAEVK-SEIHIPDV--EPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPA------LAKACVN  103 (109)
T ss_dssp             HHCHHHHHHHC------C-CEEEETTS--CHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred             HcCHHHHHHhcCCcccCC-CeEEeCCC--CHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence            489999999986433223 67888776  58999999999999999999999999999999999997      9999999


Q ss_pred             Hhhhh
Q 022577           82 FLTLV   86 (295)
Q Consensus        82 fL~~~   86 (295)
                      ||.+.
T Consensus       104 ~l~~~  108 (109)
T 2vkp_A          104 FLETS  108 (109)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            99764

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=98.59  E-value=6.6e-08  Score=77.50  Aligned_cols=73  Identities=18%  Similarity=0.266  Sum_probs=65.2

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.|+++++..     +..+|.|+|++  +++|+.+-+|+|++++.+++.|+..+..+|++++|.+      |....+.
T Consensus        49 a~S~yF~~~f~~-----~~~~i~l~~~~--~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~------L~~~c~~  115 (121)
T 1buo_A           49 CTSKMFEILFHR-----NSQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCLK  115 (121)
T ss_dssp             HHCHHHHHHTTS-----CCSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHH
T ss_pred             hcCHHHHHHHcC-----CCcEEEeCCCC--HHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHH------HHHHHHH
Confidence            589999999875     24578888875  8999999999999999999999999999999999996      9999999


Q ss_pred             Hhhhhh
Q 022577           82 FLTLVI   87 (295)
Q Consensus        82 fL~~~v   87 (295)
                      ||.+.+
T Consensus       116 ~l~~~I  121 (121)
T 1buo_A          116 MLETIQ  121 (121)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998753

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=98.54  E-value=1.6e-07  Score=78.64  Aligned_cols=106  Identities=11%  Similarity=0.093  Sum_probs=81.7

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.||++++...-.......|.|+|++  +++|+.+-+|+|+.++.+++.|+..+..+|++++|.+      |...++.
T Consensus        55 ~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~  126 (172)
T 3htm_A           55 ARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMCED  126 (172)
T ss_dssp             HHCHHHHHHHHSCCCGGGTTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred             HcCHHHHHHHccCccccCCCeEEecCCC--HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence            5799999999864332244688898874  8999999999999999999999999999999999997      9999999


Q ss_pred             HhhhhhccChHHHHHHHhhhhcccchhhhhh---hHHHHHHHHHHH
Q 022577           82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ---IVRRCCDSIAWK  124 (295)
Q Consensus        82 fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~---iv~RCidsla~k  124 (295)
                      ||.+.+-  -..       |-.++.+|+..+   +.+.|.+-|...
T Consensus       127 ~l~~~l~--~~n-------~~~~~~~A~~~~~~~L~~~~~~~i~~~  163 (172)
T 3htm_A          127 ALCSNLS--VEN-------AAEILILADLHSADQLKTQAVDFINYH  163 (172)
T ss_dssp             HHHHTCC--TTT-------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhCC--HHH-------HHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            9987542  223       333444454433   677777776643

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=98.53  E-value=9.5e-08  Score=76.08  Aligned_cols=75  Identities=12%  Similarity=0.288  Sum_probs=62.6

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.|+++++...-.......|.|+++  .+++|+.+-+|+|++++.+++.|+..+..+|++++|.+      |....+.
T Consensus        46 a~S~~F~~~f~~~~~e~~~~~i~l~~~--~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~------L~~~C~~  117 (120)
T 2if5_A           46 ACSQYFKKLFTSGAVVDQQNVYEIDFV--SAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPA------VSHVCAD  117 (120)
T ss_dssp             HHCHHHHHHHHC-----CCSEEECCSS--CHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred             HhCHHHHHHhcCCccccCCceEEeCCC--CHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHH------HHHHHHH
Confidence            479999999986432224457888776  48999999999999999999999999999999999997      9999999


Q ss_pred             Hhh
Q 022577           82 FLT   84 (295)
Q Consensus        82 fL~   84 (295)
                      ||+
T Consensus       118 ~L~  120 (120)
T 2if5_A          118 LLD  120 (120)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            884

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=98.49  E-value=9.5e-08  Score=76.47  Aligned_cols=73  Identities=21%  Similarity=0.218  Sum_probs=63.2

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.|++.++....    ...|.|+|++  +++|+.+-+|+|++++.+++.|+..+..+|++++|.+      |....+.
T Consensus        45 a~S~yF~~~f~~~~----~~~i~l~~~~--~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~------L~~~C~~  112 (119)
T 3b84_A           45 CCSHFFQSLYGDGS----GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPE------AVELCQS  112 (119)
T ss_dssp             HHCHHHHHHHTTTT----CCCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred             hcCHHHHHHHCCCC----CCeEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence            47999999998633    3578888877  8999999999999999999999999999999999997      9999999


Q ss_pred             Hhhhh
Q 022577           82 FLTLV   86 (295)
Q Consensus        82 fL~~~   86 (295)
                      ||.+.
T Consensus       113 ~l~~~  117 (119)
T 3b84_A          113 FKPKT  117 (119)
T ss_dssp             CC---
T ss_pred             HHHHc
Confidence            98763

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=98.45  E-value=2.6e-07  Score=73.24  Aligned_cols=72  Identities=18%  Similarity=0.346  Sum_probs=61.4

Q ss_pred             CcccHHHHHHcCCCCCCCccceeec--CCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLE--NFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKT   79 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~--dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~t   79 (295)
                      ++|.|++.++...+    ...|.|+  |+  .+++|+.+.+|+|++++.+++.||..+..+|++++|.+      |....
T Consensus        43 a~S~yF~~~f~~~~----~~~i~l~~~~~--~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~------L~~~C  110 (116)
T 2vpk_A           43 SFSEYFGAIYRSTS----ENNVFLDQSQV--KADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEE------VVTKC  110 (116)
T ss_dssp             HHCHHHHHHHTTCC----CSCEECCTTTC--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHH
T ss_pred             hcCHHHHHHHcCCC----CCeEEeecCCC--CHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHH------HHHHH
Confidence            57999999998652    2356665  54  58999999999999999999999999999999999986      99999


Q ss_pred             HHHhhh
Q 022577           80 EAFLTL   85 (295)
Q Consensus        80 e~fL~~   85 (295)
                      +.||.+
T Consensus       111 ~~~l~~  116 (116)
T 2vpk_A          111 KIKMED  116 (116)
T ss_dssp             HHHHC-
T ss_pred             HHHHhC
Confidence            999853

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=98.43  E-value=3.6e-07  Score=73.47  Aligned_cols=75  Identities=17%  Similarity=0.302  Sum_probs=65.1

Q ss_pred             CcccHHHHHHcCCCCCCCccceee-cCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKL-ENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE   80 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l-~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te   80 (295)
                      ++|.|+++++...... ....|.| +++  .+++|+.+-+|+|++++.+++.|+..|..+|++++|.+      |....+
T Consensus        50 a~S~~F~~~f~~~~~e-~~~~i~l~~~~--~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~------L~~~c~  120 (127)
T 1r29_A           50 ACSGLFYSIFTDQLKR-NLSVINLDPEI--NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH------VVDTCR  120 (127)
T ss_dssp             HHCHHHHHHHTSTTTT-TCSEEECCTTS--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHH
T ss_pred             HhCHHHHHHhcCCccC-CCCEEEeCCCC--CHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence            5799999999864432 4567888 665  58999999999999999999999999999999999997      999999


Q ss_pred             HHhhh
Q 022577           81 AFLTL   85 (295)
Q Consensus        81 ~fL~~   85 (295)
                      .||.+
T Consensus       121 ~~l~~  125 (127)
T 1r29_A          121 KFIKA  125 (127)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99865

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=98.39  E-value=2.4e-07  Score=74.07  Aligned_cols=70  Identities=19%  Similarity=0.362  Sum_probs=61.2

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.|++.++...     ...|.++++  .+++|+.+-+|+|++++.+++.|+..+..+|++|+|.+      |....+.
T Consensus        48 a~S~yF~~~f~~~-----~~~i~l~~~--~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~------L~~~C~~  114 (119)
T 2q81_A           48 ACSEYFKMLFVDQ-----KDVVHLDIS--NAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQD------IITACHA  114 (119)
T ss_dssp             HHCHHHHHHHHHC-----CSGGGGGGC--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred             HcCHHHHHHHcCC-----CCEEEeCCC--CHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHH------HHHHHHH
Confidence            4799999999852     345667655  58999999999999999999999999999999999997      9999999


Q ss_pred             Hhh
Q 022577           82 FLT   84 (295)
Q Consensus        82 fL~   84 (295)
                      |+.
T Consensus       115 ~l~  117 (119)
T 2q81_A          115 LKS  117 (119)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            885

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=98.37  E-value=3.3e-07  Score=76.08  Aligned_cols=74  Identities=20%  Similarity=0.281  Sum_probs=62.5

Q ss_pred             CcccHHHHHHcCCCCC--CCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHH
Q 022577            2 SKCGYIARLELQPSIS--NLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKT   79 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~--~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~t   79 (295)
                      ++|.||+.++......  .....|.|+|++  +++|+.+.+|+|.+++.+++.|+..|..+|++++|.+      |....
T Consensus        68 a~S~yF~~mf~~~~~e~e~~~~~I~l~~v~--~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C  139 (144)
T 2ppi_A           68 AASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTD------LKTLC  139 (144)
T ss_dssp             HHCHHHHHHHHHCC-----CCCEEECCSSC--HHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHH------HHHHH
T ss_pred             HcCHHHHHHHcCCCccccCCCcEEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHH------HHHHH
Confidence            4799999999753211  145578888876  9999999999999999999999999999999999997      88888


Q ss_pred             HHHh
Q 022577           80 EAFL   83 (295)
Q Consensus        80 e~fL   83 (295)
                      +.||
T Consensus       140 ~~~L  143 (144)
T 2ppi_A          140 CEFL  143 (144)
T ss_dssp             HTTC
T ss_pred             HHHh
Confidence            8887

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=98.37  E-value=1.7e-07  Score=76.75  Aligned_cols=74  Identities=19%  Similarity=0.228  Sum_probs=61.9

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.|++.++....    ...|.|+|++  +++|+.+.+|+|+.++.+++.||..|..||++|+|.+      |....+.
T Consensus        46 a~S~yF~~mf~~~~----~~~i~l~~~~--~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C~~  113 (135)
T 2yy9_A           46 CCSHFFQRIYGDGT----GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPE------AVELCQS  113 (135)
T ss_dssp             HHCHHHHHTCC--------CCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred             HhCHHHHHHHcCCC----CCeEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence            47899999987532    3578888876  8999999999999999999999999999999999996      9999999


Q ss_pred             Hhhhhh
Q 022577           82 FLTLVI   87 (295)
Q Consensus        82 fL~~~v   87 (295)
                      ||.+..
T Consensus       114 ~l~~~l  119 (135)
T 2yy9_A          114 FQPQTS  119 (135)
T ss_dssp             CCC---
T ss_pred             HHHHhc
Confidence            997744

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=98.35  E-value=6.6e-07  Score=73.30  Aligned_cols=76  Identities=16%  Similarity=0.287  Sum_probs=64.9

Q ss_pred             CcccHHHHHHcCCCCCCCccceeec-CCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLE-NFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE   80 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~-dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te   80 (295)
                      ++|.||+.++.....  +...|.++ ++  .+++|+.+.+|+|++++.+++.||..+..+|++|+|.+      |....+
T Consensus        57 a~S~yF~~~f~~~~~--e~~~i~l~~~v--~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~------L~~~C~  126 (138)
T 2z8h_A           57 ACSSYFHSRIVGQTD--AELTVTLPEEV--TVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHN------IEESCF  126 (138)
T ss_dssp             HHCHHHHHHHTTCCC--TTEEEECCTTS--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGG------GHHHHH
T ss_pred             HcCHHHHHHHhcCCC--CCceEEeCCCC--CHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence            589999999986432  23467773 55  48999999999999999999999999999999999997      999999


Q ss_pred             HHhhhhh
Q 022577           81 AFLTLVI   87 (295)
Q Consensus        81 ~fL~~~v   87 (295)
                      .||.+.+
T Consensus       127 ~~l~~~l  133 (138)
T 2z8h_A          127 QFLKFKF  133 (138)
T ss_dssp             HHTTCCC
T ss_pred             HHHHHhc
Confidence            9998754

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=98.34  E-value=1.7e-07  Score=75.92  Aligned_cols=73  Identities=23%  Similarity=0.405  Sum_probs=56.8

Q ss_pred             CcccHHHHHHcCCCCCCCccceeec-CCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLE-NFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE   80 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~-dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te   80 (295)
                      ++|.|+++++...    ....|.|+ +++  +++|+.+.+|+|.+++++++.|+..+..||++|+|.+      |....+
T Consensus        54 a~S~~F~~~f~~~----~~~~i~l~~~~~--~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~------l~~~C~  121 (129)
T 3ga1_A           54 ASSSYFRDLFNNS----RSAVVELPAAVQ--PQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQE------IMEKGT  121 (129)
T ss_dssp             HHBHHHHHHHHHC----CCSEEECCTTCC--HHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTT------SSCC--
T ss_pred             HcCHHHHHHHcCC----CCCEEEECCCCC--HHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence            4799999999864    23477775 664  8999999999999999999999999999999999997      778888


Q ss_pred             HHhhhh
Q 022577           81 AFLTLV   86 (295)
Q Consensus        81 ~fL~~~   86 (295)
                      .||.+.
T Consensus       122 ~~L~~~  127 (129)
T 3ga1_A          122 EFFLKV  127 (129)
T ss_dssp             ------
T ss_pred             HHHHHh
Confidence            888763

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=98.33  E-value=1.6e-07  Score=76.53  Aligned_cols=94  Identities=11%  Similarity=0.073  Sum_probs=63.1

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.||++++...........|.++|+  .+++|+.+.+|+|++++.+++.|+..+..+|++++|.+      |...++.
T Consensus        46 ~~S~~F~~~f~~~~~e~~~~~i~l~~~--~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~  117 (145)
T 4eoz_A           46 ARSPVFSAMFEHEMEESKKNRVEINDV--EPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMCED  117 (145)
T ss_dssp             HHCHHHHHHHHSSSHHHHHTEEEECSS--CHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHH------HHHHHHC
T ss_pred             HcCHHHHHHHcCCCcCCCCceEEecCC--CHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHH------HHHHHHH
Confidence            579999999986432213457888886  48999999999999999999999999999999999997      9999999


Q ss_pred             HhhhhhccChHHHHHHHhhhhcccchhhhhh
Q 022577           82 FLTLVILSSWKETITVLKSCKNLSPWAENLQ  112 (295)
Q Consensus        82 fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l~  112 (295)
                      ||.+.+-         ...|-.++.+|+..+
T Consensus       118 ~l~~~l~---------~~n~~~~l~~A~~~~  139 (145)
T 4eoz_A          118 ALCSNLS---------VENAAEILILADLHS  139 (145)
T ss_dssp             C------------------------------
T ss_pred             HHHHhCC---------HHHHHHHHHHHHHhC
Confidence            9987442         134555555655543

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=98.24  E-value=3.9e-07  Score=73.10  Aligned_cols=63  Identities=19%  Similarity=0.286  Sum_probs=54.0

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecC-CCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCcc
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLEN-FPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSE   68 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~d-fPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE   68 (295)
                      ++|.|+++++.....  +...|.+++ +  .+++|+.+.+|+|.+++.+++.||..+..+|++|+|.+
T Consensus        53 a~S~yF~~~f~~~~~--e~~~i~l~~~~--~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~  116 (125)
T 3ohu_A           53 ACSEYFWQALVGQTK--NDLVVSLPEEV--TARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHN  116 (125)
T ss_dssp             HHBHHHHHHHTTCCC--SSCEEECCTTC--CHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSS
T ss_pred             HcCHHHHHHhcCCCC--CCcEEEeCCCC--CHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHH
Confidence            479999999986443  244677765 4  59999999999999999999999999999999999986

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=98.10  E-value=1.1e-06  Score=70.72  Aligned_cols=73  Identities=16%  Similarity=0.282  Sum_probs=58.4

Q ss_pred             CcccHHHHHHcCCCCCCCccceeec-CCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLE-NFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTE   80 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~-dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te   80 (295)
                      ++|.|++.++.....  +...|.++ ++  .+++|+.+-+|+|++++.+++.||..+..+|++++|.+      |....+
T Consensus        50 a~S~yF~~mf~~~~~--e~~~i~l~~~v--~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~------L~~~C~  119 (124)
T 2ihc_A           50 ACSSYFHSRIVGQAD--GELNITLPEEV--TVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHN------IEESCF  119 (124)
T ss_dssp             HHBHHHHHHHTTC-----CEEEECCTTS--CHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSS------CCGGGG
T ss_pred             HcCHHHHHHHcCCCC--CCceEeecCCc--CHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHH------HHHHHH
Confidence            589999999986432  23467773 44  58999999999999999999999999999999999996      666666


Q ss_pred             HHhh
Q 022577           81 AFLT   84 (295)
Q Consensus        81 ~fL~   84 (295)
                      .||.
T Consensus       120 ~~l~  123 (124)
T 2ihc_A          120 QFLK  123 (124)
T ss_dssp             GTC-
T ss_pred             HHHh
Confidence            6653

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=98.06  E-value=4.5e-06  Score=76.62  Aligned_cols=106  Identities=12%  Similarity=0.105  Sum_probs=82.2

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.|++.++...-......+|.|+|+  -|++|+..-+|+|+.++.++..|+..|..||++++|..      |...+|.
T Consensus       195 a~S~~F~~~f~~~~~e~~~~~i~l~~~--~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c~~  266 (312)
T 3hqi_A          195 ARSPVFSAMFEHEMEESKKNRVEINDV--EPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMCED  266 (312)
T ss_dssp             HHCHHHHHHTTC-----CCSEEEECSS--CHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred             HcCHHHHHHhccCccccCCceEEecCC--CHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHH------HHHHHHH
Confidence            579999999976432224568999887  48999999999999999999999999999999999986      9999999


Q ss_pred             HhhhhhccChHHHHHHHhhhhcccchhhhh---hhHHHHHHHHHHH
Q 022577           82 FLTLVILSSWKETITVLKSCKNLSPWAENL---QIVRRCCDSIAWK  124 (295)
Q Consensus        82 fL~~~v~~sw~dsi~vL~sc~~l~p~ae~l---~iv~RCidsla~k  124 (295)
                      ||.+.+-.         ..|-.++.+|+..   .+.++|++-|+..
T Consensus       267 ~l~~~~~~---------~n~~~~l~~A~~~~~~~L~~~~~~~i~~~  303 (312)
T 3hqi_A          267 ALCSNLSV---------ENAAEILILADLHSADQLKTQAVDFINYH  303 (312)
T ss_dssp             HHHTTCCT---------TTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHccCCH---------HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            99865421         2344455566654   3788898887754

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=98.04  E-value=3e-06  Score=68.35  Aligned_cols=57  Identities=23%  Similarity=0.273  Sum_probs=50.6

Q ss_pred             cceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHHHhhh
Q 022577           21 YDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEAFLTL   85 (295)
Q Consensus        21 ~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~fL~~   85 (295)
                      ..|+|+|++  +++|+.+.+|+|++++.++..||..+..||++|+|.+      |....+.++.+
T Consensus        61 ~~i~l~~v~--~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~------l~~~C~~~~~~  117 (119)
T 3m5b_A           61 QWALGEGIS--PSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQS------LEEACWRARGD  117 (119)
T ss_dssp             EEECCSSCC--HHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHH------HHHHHHHHC--
T ss_pred             CEEEeCCCC--HHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHH------HHHHHHHHHhh
Confidence            468888875  8999999999999999999999999999999999996      88888888765

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=97.98  E-value=4.8e-06  Score=66.44  Aligned_cols=60  Identities=20%  Similarity=0.283  Sum_probs=53.4

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCcc-ccCCcchHHHhhhhhhhcCcc
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPI-AFNPNNIAPLRCASEFLDMSE   68 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i-~lt~~NVa~LrCAAe~LeMtE   68 (295)
                      ++|.|++.++...     ...|.+++++  +++|+.+.+|+|++++ .+++.|+..+..+|++++|..
T Consensus        52 a~S~~F~~~f~~~-----~~~i~l~~~~--~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~  112 (116)
T 3fkc_A           52 ASSTYFHQLFSVA-----GQVVELSFIR--AEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKF  112 (116)
T ss_dssp             HHCHHHHHHTTSC-----CSEEEECSSC--HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHH
T ss_pred             HcCHHHHHHHcCC-----CCEEEeCCCC--HHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccc
Confidence            5799999999863     3578888875  8999999999999999 799999999999999999974

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=96.84  E-value=0.0017  Score=50.34  Aligned_cols=62  Identities=19%  Similarity=0.239  Sum_probs=47.5

Q ss_pred             CcccHHHHHHcCCCCC--CCccceeecCCCCChHHHHHHHHHhc-----C---Cccc---cCCcchHHHhhhhhhhc
Q 022577            2 SKCGYIARLELQPSIS--NLGYDLKLENFPGGSETFEIILKFCY-----G---LPIA---FNPNNIAPLRCASEFLD   65 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~--~~~~~i~l~dfPGG~e~FEl~akFCY-----g---~~i~---lt~~NVa~LrCAAe~Le   65 (295)
                      ..|++|+.++....+.  +....|.|+++  .+.+++.+..|||     .   ..|.   +++.|+--|-.||.||+
T Consensus        22 ~~S~~ik~m~~~~~~~~E~~~~~I~l~~V--~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~   96 (97)
T 4ajy_C           22 LTSGTIKAMLSGPGQFAENETNEVNFREI--PSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD   96 (97)
T ss_dssp             TTSHHHHHHHCCC--------CEEECTTS--CHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHT
T ss_pred             HHhHHHHHHHHhCCCccccCCCceECCCC--CHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhC
Confidence            4699999999864321  12446777765  4799999999999     4   5666   99999999999999997

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=94.93  E-value=0.025  Score=46.67  Aligned_cols=74  Identities=15%  Similarity=0.218  Sum_probs=60.5

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCc--------------------------cccCCcchH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLP--------------------------IAFNPNNIA   55 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~--------------------------i~lt~~NVa   55 (295)
                      ..|++++.++....    ...|.|++++  +.+++.+..|||--+                          +.++..++-
T Consensus        22 ~~S~~ik~ml~~~~----~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~   95 (141)
T 1fs1_B           22 KQSVTIKTMLEDLG----MDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLF   95 (141)
T ss_dssp             GTCHHHHHHHHHTC----CSSEECTTCC--HHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHH
T ss_pred             HHhHHHHHHHHhcC----CCceecCCcC--HHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHH
Confidence            57999999998642    2367787764  579999999998422                          678999999


Q ss_pred             HHhhhhhhhcCccccCCCchHHHHHHHhhhhh
Q 022577           56 PLRCASEFLDMSEEYEDGNLISKTEAFLTLVI   87 (295)
Q Consensus        56 ~LrCAAe~LeMtE~~~~~NL~~~te~fL~~~v   87 (295)
                      -|--||.||+|..      |+.-+-.|+...+
T Consensus        96 eLi~AAnyL~I~~------Lldl~c~~vA~~i  121 (141)
T 1fs1_B           96 ELILAANYLDIKG------LLDVTCKTVANMI  121 (141)
T ss_dssp             HHHHHHHHHTCHH------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhH------HHHHHHHHHHHHH
Confidence            9999999999985      9999988887755

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=94.66  E-value=0.011  Score=49.86  Aligned_cols=76  Identities=14%  Similarity=0.254  Sum_probs=41.7

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCc---------------------------cccCCcch
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLP---------------------------IAFNPNNI   54 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~---------------------------i~lt~~NV   54 (295)
                      ..|++|+.++....   ....|.|++++|  .+++.+..|||--+                           +.+++.++
T Consensus        24 ~~S~~ik~ml~~~~---~~~~Ipl~~V~~--~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l   98 (160)
T 2p1m_A           24 LESQTIAHMVEDDC---VDNGVPLPNVTS--KILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATL   98 (160)
T ss_dssp             HTCTTTC---------------CCTTSCH--HHHHHHHHC----------------------------------------
T ss_pred             HHhHHHHHHHHccC---CCCceeCCcCcH--HHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHH
Confidence            46889999987643   223677776654  89999999999533                           57899999


Q ss_pred             HHHhhhhhhhcCccccCCCchHHHHHHHhhhhhc
Q 022577           55 APLRCASEFLDMSEEYEDGNLISKTEAFLTLVIL   88 (295)
Q Consensus        55 a~LrCAAe~LeMtE~~~~~NL~~~te~fL~~~v~   88 (295)
                      --|--||.||+|..      |+.-+-.|+...+-
T Consensus        99 ~eLi~AAnyL~I~~------Lldl~c~~vA~~ik  126 (160)
T 2p1m_A           99 FELILAANYLNIKN------LLDLTCQTVADMIK  126 (160)
T ss_dssp             --CHHHHHHTTCHH------HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhHHH------HHHHHHHHHHHHHc
Confidence            99999999999996      99999999977653

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=89.14  E-value=0.59  Score=39.67  Aligned_cols=78  Identities=8%  Similarity=0.119  Sum_probs=54.5

Q ss_pred             CcccHHHHHHcCCCCC----CCccceeecCCCCChHHHHHHHHHhcCCc-------------------------cccCCc
Q 022577            2 SKCGYIARLELQPSIS----NLGYDLKLENFPGGSETFEIILKFCYGLP-------------------------IAFNPN   52 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~----~~~~~i~l~dfPGG~e~FEl~akFCYg~~-------------------------i~lt~~   52 (295)
                      ..|+.|+.++......    .....|.|++++  +.+++.|..|||--+                         +.+.+.
T Consensus        27 ~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~  104 (169)
T 3v7d_A           27 ERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVR--SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQE  104 (169)
T ss_dssp             TTSHHHHHHHHC-----------CEEECTTCC--HHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHH
T ss_pred             HHhHHHHHHHHhcCcccccccCCCceeeCCCC--HHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHH
Confidence            4699999999865431    122567787765  689999999997311                         346667


Q ss_pred             chHHHhhhhhhhcCccccCCCchHHHHHHHhhhhh
Q 022577           53 NIAPLRCASEFLDMSEEYEDGNLISKTEAFLTLVI   87 (295)
Q Consensus        53 NVa~LrCAAe~LeMtE~~~~~NL~~~te~fL~~~v   87 (295)
                      .+--|-.||.||+|..      |+.-+=+++-.++
T Consensus       105 ~LfeLi~AAnyLdIk~------Lldl~c~~vA~~i  133 (169)
T 3v7d_A          105 MLYEIILAANYLNIKP------LLDAGCKVVAEMI  133 (169)
T ss_dssp             HHHHHHHHHHHTTCHH------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHH------HHHHHHHHHHHHH
Confidence            7788899999999985      7777777665544

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=87.19  E-value=0.4  Score=36.93  Aligned_cols=63  Identities=19%  Similarity=0.264  Sum_probs=44.3

Q ss_pred             CcccHHHHHHcCCCC-C-CCccceeecCCCCChHHHHHHHHHhcCC-----------ccccCCcchHHHhhhhhhhcC
Q 022577            2 SKCGYIARLELQPSI-S-NLGYDLKLENFPGGSETFEIILKFCYGL-----------PIAFNPNNIAPLRCASEFLDM   66 (295)
Q Consensus         2 SrSg~l~rl~~~~~~-~-~~~~~i~l~dfPGG~e~FEl~akFCYg~-----------~i~lt~~NVa~LrCAAe~LeM   66 (295)
                      ..|++++.++.+... . .....|.|++++  +.+++.+..|||--           ...+.+..+--|--||.||++
T Consensus        21 ~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           21 LTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC   96 (96)
T ss_dssp             TTSHHHHHHHHCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred             HHhHHHHHHHHccCCcccccCCceeCCCCC--HHHHHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhCc
Confidence            479999999987433 1 123467777654  57999999999721           136778888888899999874

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=81.78  E-value=0.82  Score=35.37  Aligned_cols=62  Identities=13%  Similarity=0.125  Sum_probs=44.2

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCC--------------ccccCCcchHHHhhhhhhhcC
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGL--------------PIAFNPNNIAPLRCASEFLDM   66 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~--------------~i~lt~~NVa~LrCAAe~LeM   66 (295)
                      ..|++++.++...- ......|.|++++  +.+++.+..|||--              ...+.+..+--|--||.||++
T Consensus        24 ~~S~~ik~ml~~~~-e~~~~~Iplp~V~--~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           24 MISPTLKAMIEGPF-RESKGRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             TTCHHHHHHHHSST-TTCTTEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             HHhHHHHHHHhccc-ccCCCceecCCcC--HHHHHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHhCc
Confidence            47999999998622 1123468887665  57999999999821              134666677778888988874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	98.65
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	98.63
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	82.04

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.7e-08  Score=80.28  Aligned_cols=72  Identities=18%  Similarity=0.278  Sum_probs=64.1

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.|++.++.+     +..++.+++++  |++|+.+.+|+|.+++++++.|+..+..||++|+|.+      |....+.
T Consensus        49 a~S~~F~~lf~~-----~~~~i~~~~v~--~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~------L~~~C~~  115 (121)
T d1buoa_          49 CTSKMFEILFHR-----NSQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCLK  115 (121)
T ss_dssp             HHCHHHHHHTTS-----CCSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHHH
T ss_pred             ccChhhhhhccC-----ccceeecCCCC--HHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHH------HHHHHHH
Confidence            579999999864     33478888875  8999999999999999999999999999999999997      9999999


Q ss_pred             Hhhhh
Q 022577           82 FLTLV   86 (295)
Q Consensus        82 fL~~~   86 (295)
                      ||+.+
T Consensus       116 ~L~~i  120 (121)
T d1buoa_         116 MLETI  120 (121)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            99763

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.1e-08  Score=79.24  Aligned_cols=76  Identities=18%  Similarity=0.269  Sum_probs=61.5

Q ss_pred             CcccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhcCCccccCCcchHHHhhhhhhhcCccccCCCchHHHHHH
Q 022577            2 SKCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCYGLPIAFNPNNIAPLRCASEFLDMSEEYEDGNLISKTEA   81 (295)
Q Consensus         2 SrSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCYg~~i~lt~~NVa~LrCAAe~LeMtE~~~~~NL~~~te~   81 (295)
                      ++|.|++.++...........+.+.+  -.|++|+.+.+|+|+++++++..||..+..||+||+|.+      |...++.
T Consensus        46 ~~S~~F~~~f~~~~~e~~~~~~~~~~--v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C~~  117 (122)
T d1r29a_          46 ACSGLFYSIFTDQLKRNLSVINLDPE--INPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH------VVDTCRK  117 (122)
T ss_dssp             HHCHHHHHHHTSTTTTTCSEEECCTT--SCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHHH
T ss_pred             hCCHHHHHHhccchhhhcceeeeecc--cCHHHHHHHHhhhcCCeecCchhhHHHHHHHHHHHCcHH------HHHHHHH
Confidence            47999999987543321222233343  458999999999999999999999999999999999996      9999999


Q ss_pred             Hhhh
Q 022577           82 FLTL   85 (295)
Q Consensus        82 fL~~   85 (295)
                      ||..
T Consensus       118 ~L~~  121 (122)
T d1r29a_         118 FIKA  121 (122)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9874

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.04  E-value=0.86  Score=33.30  Aligned_cols=61  Identities=13%  Similarity=0.146  Sum_probs=43.5

Q ss_pred             cccHHHHHHcCCCCCCCccceeecCCCCChHHHHHHHHHhc--------C------CccccCCcchHHHhhhhhhhcC
Q 022577            3 KCGYIARLELQPSISNLGYDLKLENFPGGSETFEIILKFCY--------G------LPIAFNPNNIAPLRCASEFLDM   66 (295)
Q Consensus         3 rSg~l~rl~~~~~~~~~~~~i~l~dfPGG~e~FEl~akFCY--------g------~~i~lt~~NVa~LrCAAe~LeM   66 (295)
                      .|+.+++++...... ....|.|++++  +++++.+..||+        .      ..+.+.+...--|-.||.||++
T Consensus        25 ~S~tI~~ml~~~~~e-~~~~Ipl~~V~--s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          25 ISPTLKAMIEGPFRE-SKGRIELKQFD--SHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             TCHHHHHHHHSSTTT-CTTEEEETTSC--HHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             HhHHHHHHHHccCCC-CcCccccCCCC--hHHHHHHHHHHHHhhhCcCcccccccCCCCCCCHHHHHHHHHHHhhhCC
Confidence            689999999764332 33467777654  689999999996        1      1344555556777889999875