Citrus Sinensis ID: 022590

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT
Secondary Structure (PSIPRED)
ccEEEEcccccEEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEcccccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEccccccccccccccEEEEEEEEEEcccccEEEEEEEccEEEEEEccccEEEEcccccccccccccccccEEEEcccccEEEEEEcccccccEEEEccccccEEEEEccccccEEEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
cEEEccccccEEEEEEEccccccEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEccccccccEEEEEEccccccEEEEcccccEEEEEEcccccEEEEEEcccccccEEccccccccEEEEEccccccEEEEEEcccEEEEcccccEEEEEEcccccccccccccEEEEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccc
Coil and Loop (DISEMBL)
mcyvdqkeesFYTVSWacnvdgipflvaggiNGIIRVIDVSNEKLHKSFvghgdsineirtqplkpslvvsaskdeSVRLWNVQTGICILIFAgagghrnevlsvdfhpsdiyriascgmdntvKIWSMKEFWTYVEKsftwtdlpskfptkyvqfPVFIASVHSNYVDCNRWLGdfilsksvdneivlwepkmkeqspgegtadilqkypvpecdiWFIKFSCDFHYNaaaignreGKIFVWELQSSPPVLIARLSHaqskspirqtamsydgstilsccedgaiwrwdaipt
Flexible Loop (DISEMBL)
MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGhgdsineirtqplkPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEpkmkeqspgegTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT
Low Complexity Region (SEG)
MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT
Disordered region (IsUnstruct)
********ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT*****SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE************ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL************AMSYDGSTILSCCEDGAIWRWDAI**
Disordered Region (DISOPRED)
MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP*
Disordered Region (DISEMBL)
********ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK*********TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT
Disordered Region (DISPRO)
MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q8VZY6	379	Polycomb group protein FI	N/A	no	0.993	0.770	0.829	1e-142
Q9LT47	369	Polycomb group protein FE	yes	no	0.986	0.785	0.793	1e-142
Q8VZY7	461	Polycomb group protein FI	N/A	no	0.986	0.629	0.691	1e-120
O16023	428	Polycomb protein esc OS=M	N/A	no	0.976	0.670	0.411	3e-62
Q26458	425	Polycomb protein esc OS=D	N/A	no	0.979	0.677	0.402	5e-62
Q921E6	441	Polycomb protein EED OS=M	yes	no	0.969	0.646	0.405	1e-61
O75530	441	Polycomb protein EED OS=H	yes	no	0.969	0.646	0.405	1e-61
Q3SZ25	441	Polycomb protein EED OS=B	yes	no	0.969	0.646	0.405	2e-61
Q8UUP2	438	Polycomb protein eed-A OS	N/A	no	0.969	0.650	0.405	2e-61
Q24338	425	Polycomb protein esc OS=D	yes	no	0.993	0.687	0.400	3e-61

>sp|Q8VZY6|FIE2_MAIZE Polycomb group protein FIE2 OS=Zea mays GN=FIE2 PE=2 SV=1

 Score =  506 bits (1302), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 244/294 (82%), Positives = 264/294 (89%), Gaps = 2/294 (0%)

Query: 1   MCYVDQ-KEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINE 58
             YVD+ K+ESFYT+SWA + VDG P LVA G NGIIRVI+ + EKL KSFVGHGDSINE
Sbjct: 79  QAYVDEDKDESFYTLSWARDHVDGSPLLVAAGSNGIIRVINCATEKLAKSFVGHGDSINE 138

Query: 59  IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC 118
           IRTQPLKPSL++SASKDESVRLWNV TGICILIFAGAGGHRNEVLSVDFHPSDI R ASC
Sbjct: 139 IRTQPLKPSLIISASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFHPSDIERFASC 198

Query: 119 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFI 178
           GMDNTVKIWSMKEFW YV+KS++WTDLPSKFPTKYVQFPV IA+VHSNYVDC RWLGDFI
Sbjct: 199 GMDNTVKIWSMKEFWLYVDKSYSWTDLPSKFPTKYVQFPVLIAAVHSNYVDCTRWLGDFI 258

Query: 179 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG 238
           LSKSVDNEIVLWEPK KEQSPGEG+ DILQKYPVPECDIWFIKFSCDFH+N  AIGNREG
Sbjct: 259 LSKSVDNEIVLWEPKTKEQSPGEGSIDILQKYPVPECDIWFIKFSCDFHFNQLAIGNREG 318

Query: 239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292
           KI+VWE+QSSPPVLIARL + Q KSPIRQTA+S+DGSTIL   EDG IWRWD +
Sbjct: 319 KIYVWEVQSSPPVLIARLYNQQCKSPIRQTAVSFDGSTILGAGEDGTIWRWDEV 372

Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility.
Zea mays (taxid: 4577)

>sp|Q9LT47|FIE_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM OS=Arabidopsis thaliana GN=FIE PE=1 SV=2

 Score =  504 bits (1297), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 231/291 (79%), Positives = 262/291 (90%), Gaps = 1/291 (0%)

Query: 3   YVDQ-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
           Y D+ KEESFYTVSWAC V+G P++ AGG+ GIIRVIDV++E +HKS VGHGDS+NEIRT
Sbjct: 77  YADEDKEESFYTVSWACGVNGNPYVAAGGVKGIIRVIDVNSETIHKSLVGHGDSVNEIRT 136

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
           QPLKP LV++ASKDESVRLWNV+TGICILIFAGAGGHR EVLSVDFHPSDIYR ASCGMD
Sbjct: 137 QPLKPQLVITASKDESVRLWNVETGICILIFAGAGGHRYEVLSVDFHPSDIYRFASCGMD 196

Query: 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
            T+KIWSMKEFWTYVEKSFTWTD PSKFPTK+VQFPVF AS+H+NYVDCNRW GDFILSK
Sbjct: 197 TTIKIWSMKEFWTYVEKSFTWTDDPSKFPTKFVQFPVFTASIHTNYVDCNRWFGDFILSK 256

Query: 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241
           SVDNEI+LWEP++KE SPGEG +D+L +YPVP CDIWFIKFSCD H ++ AIGN+EGK++
Sbjct: 257 SVDNEILLWEPQLKENSPGEGASDVLLRYPVPMCDIWFIKFSCDLHLSSVAIGNQEGKVY 316

Query: 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292
           VW+L+S PPVLI +LSH QSKS IRQTAMS DGSTIL+CCEDG IWRWD I
Sbjct: 317 VWDLKSCPPVLITKLSHNQSKSVIRQTAMSVDGSTILACCEDGTIWRWDVI 367

Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility. Required to prevent the proliferation of the central cell by repressing unknown target genes before fertilization. Probably also involved in floral repression mechanism established during early plant development. Regulates the anteroposterior organization of the endosperm. Interacts with the promoter and repress the transcription of genes such as PHE1, that are paternally active and maternally silenced.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZY7|FIE1_MAIZE Polycomb group protein FIE1 OS=Zea mays GN=FIE1 PE=2 SV=1

 Score =  431 bits (1109), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/292 (69%), Positives = 244/292 (83%), Gaps = 2/292 (0%)

Query: 3   YVDQ-KEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           YVD+ K+ESFYT+SW  + VD  P LVA G N IIRVI+ + EKL KS VGHG SI+EIR
Sbjct: 139 YVDEDKDESFYTLSWTIDQVDSSPLLVAAGSNRIIRVINCATEKLDKSLVGHGGSIHEIR 198

Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 120
           T   KPSL++SASKDES+RLWNV TGICIL+FAGAGGHR++VLSVDFHP+++   ASCGM
Sbjct: 199 THASKPSLIISASKDESIRLWNVHTGICILVFAGAGGHRHDVLSVDFHPTEVGIFASCGM 258

Query: 121 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS 180
           DNTVKIWSMKEFW YVEKS++WT  PSKFPT+ +QFPV  A+VHS+YVDC RWLGDFILS
Sbjct: 259 DNTVKIWSMKEFWIYVEKSYSWTGHPSKFPTRNIQFPVLTAAVHSDYVDCTRWLGDFILS 318

Query: 181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI 240
           KSV N ++LWEPK  ++ PGEG+ D+LQKYPVP+C +WF+KFSCDF+ N  AIGN +G+I
Sbjct: 319 KSVKNAVLLWEPKPDKRRPGEGSVDVLQKYPVPKCSLWFMKFSCDFYSNQMAIGNNKGEI 378

Query: 241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292
           +VWE+QSSPPVLI RL + + KSPIRQTA+S+DGSTIL   +DGAIWRWD +
Sbjct: 379 YVWEVQSSPPVLIDRLCNQECKSPIRQTAVSFDGSTILGAADDGAIWRWDEV 430

Polycomb group (PcG) protein. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via the methylation of histones, rendering chromatin heritably changed in its expressibility.

Zea mays (taxid: 4577)

>sp|O16023|ESC_MUSDO Polycomb protein esc OS=Musca domestica GN=esc PE=3 SV=1

 Score =  238 bits (608), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 126/306 (41%), Positives = 188/306 (61%), Gaps = 19/306 (6%)

Query: 1   MCYVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINE 58
           MCY D   +E FYT SW+ ++    P L   G  G+IRVID+   +   ++VGHG +INE
Sbjct: 117 MCYADPDPDEVFYTCSWSYDLKTSAPLLATAGYRGVIRVIDIHRNESVGNYVGHGQAINE 176

Query: 59  IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIA 116
           ++  P + +L++S SKD ++RLWN+QT +CI IF G  GHR+EVLS+DF   D+   RI 
Sbjct: 177 LKFHPRQANLLLSGSKDHAIRLWNIQTHVCIAIFGGVEGHRDEVLSIDF---DLRGERIM 233

Query: 117 SCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPSK--FPTKYVQFPVF-IASVHSNYVDCN 171
           S GMD+++K+W +   EF   +E S T+    S+  FPT    FP F    +H NYVDC 
Sbjct: 234 SSGMDHSLKLWRIDTPEFKDKIEMSRTFNPNKSQLPFPTIMQHFPEFSTRDIHRNYVDCV 293

Query: 172 RWLGDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDF 226
           +W GDF+LSKS +N IV W+P    Q+     P + +  I+ ++   EC+IWF++F  + 
Sbjct: 294 QWFGDFVLSKSCENSIVCWKPGQLHQTLSQLKPNDPSCTIISEFNYDECEIWFVRFGFNP 353

Query: 227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
            +   A+GN+ GK++VWEL  S P     + L++ +  S +RQTA S D + ++  C+DG
Sbjct: 354 WHKIVALGNQYGKVYVWELDPSDPRHTHSSTLNNIRCTSIVRQTAFSRDATVLVWVCDDG 413

Query: 285 AIWRWD 290
            +WRW+
Sbjct: 414 TVWRWN 419

Polycomb group (PcG) protein. In contrast to other PcG protein, it is specifically required during the first 6 hours of embryogenesis to establish PcG silencing. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via a methylation of histones, rendering chromatin heritably changed in its expressibility. Component of the Esc/E(z) complex, which methylates 'Lys-9' and 'Lys-27' residues of histone H3. The Esc/E(z) complex is necessary but not sufficient to recruit a functional PcG repressive complex that represses target genes, suggesting that the recruitment of the distinct PRC1 complex is also required to allow a subsequent repression.

Musca domestica (taxid: 7370)

>sp|Q26458|ESC_DROVI Polycomb protein esc OS=Drosophila virilis GN=esc PE=3 SV=1

 Score =  238 bits (606), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 122/303 (40%), Positives = 185/303 (61%), Gaps = 15/303 (4%)

Query: 2   CYVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEI 59
           CY D   +E FYT +W+ ++    P L A G  G+IRVID+   +   +++GHG +INE+
Sbjct: 117 CYADPDPDEVFYTCAWSYDLKTSAPLLAAAGYRGVIRVIDIEQNEAVDNYIGHGQAINEL 176

Query: 60  RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 119
           +  P K  L++S SKD ++RLWN+QT +CI IF G  GHR+EVLS+DF+     RI S G
Sbjct: 177 KFHPHKLQLLLSGSKDHAIRLWNIQTHVCIAIFGGVEGHRDEVLSIDFNMRGD-RIVSSG 235

Query: 120 MDNTVKIWSM--KEFWTYVEKSFTWTDLPSK--FPTKYVQFPVF-IASVHSNYVDCNRWL 174
           MD+++K+W +  +EF   +E S T++   S   FPT    FP F    +H NYVDC +W 
Sbjct: 236 MDHSLKLWCLNTQEFQHKIELSQTFSQEKSTLPFPTITKHFPDFSTRDIHRNYVDCVQWF 295

Query: 175 GDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYN 229
           G+F+LSKS +N IV W+P    QS     P + +  I+ ++   EC+IWF++F  +    
Sbjct: 296 GNFVLSKSCENAIVCWKPGQLHQSFEQLKPSDSSCTIIAEFEYDECEIWFVRFGFNPWQK 355

Query: 230 AAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 287
             A+GN++GK++VWE+  S P    +  L + +S + +RQ A S D S ++  C+D  +W
Sbjct: 356 VIALGNQQGKVYVWEMDPSDPEGAHMTTLHNLRSVATVRQIAFSRDASVLVYVCDDATVW 415

Query: 288 RWD 290
           RW+
Sbjct: 416 RWN 418

Polycomb group (PcG) protein. In contrast to other PcG protein, it is specifically required during the first 6 hours of embryogenesis to establish PcG silencing. PcG proteins act by forming multiprotein complexes, which are required to maintain the transcriptionally repressive state of homeotic genes throughout development. PcG proteins are not required to initiate repression, but to maintain it during later stages of development. They probably act via a methylation of histones, rendering chromatin heritably changed in its expressibility. Component of the Esc/E(z) complex, which methylates 'Lys-9' and 'Lys-27' residues of histone H3. The Esc/E(z) complex is necessary but not sufficient to recruit a functional PcG repressive complex that represses target genes, suggesting that the recruitment of the distinct PRC1 complex is also required to allow a subsequent repression.

Drosophila virilis (taxid: 7244)

>sp|Q921E6|EED_MOUSE Polycomb protein EED OS=Mus musculus GN=Eed PE=1 SV=1

 Score =  236 bits (602), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 23/308 (7%)

Query: 3   YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 138 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 197

Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 198 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 254

Query: 119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 171
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 255 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 312

Query: 172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 313 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 372

Query: 227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct: 373 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 432

Query: 285 AIWRWDAI 292
           +IWRWD +
Sbjct: 433 SIWRWDRL 440

Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene (By similarity). The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems (By similarity). Genes repressed by the PRC2/EED-EZH2 complex include HOXA7, HOXB6 and HOXC8. Plays a role in X chromosome inactivation (XCI), in which one of the two X chromosomes in female mammals is transcriptionally silenced to equalize X-linked gene dosage with XY males. Required for stable maintenance of XCI in both embryonic and extraembryonic tissues. May prevent transcriptional activation of facultative heterochromatin during differentiation. Required for development of secondary trophoblast giant cells during placental development. May regulate hippocampal synaptic plasticity in the developing brain.

Mus musculus (taxid: 10090)

>sp|O75530|EED_HUMAN Polycomb protein EED OS=Homo sapiens GN=EED PE=1 SV=2

 Score =  236 bits (602), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 23/308 (7%)

Query: 3   YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 138 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 197

Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 198 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 254

Query: 119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 171
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 255 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 312

Query: 172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 313 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 372

Query: 227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct: 373 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 432

Query: 285 AIWRWDAI 292
           +IWRWD +
Sbjct: 433 SIWRWDRL 440

Polycomb group (PcG) protein. Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene. The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems. Genes repressed by the PRC2/EED-EZH2 complex include HOXC8, HOXA9, MYT1 and CDKN2A.

Homo sapiens (taxid: 9606)

>sp|Q3SZ25|EED_BOVIN Polycomb protein EED OS=Bos taurus GN=EED PE=2 SV=1

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 23/308 (7%)

Query: 3   YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 138 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 197

Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 198 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 254

Query: 119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 171
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 255 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 312

Query: 172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 313 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 372

Query: 227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct: 373 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 432

Query: 285 AIWRWDAI 292
           +IWRWD +
Sbjct: 433 SIWRWDRL 440

Polycomb group (PcG) protein (By similarity). Component of the PRC2/EED-EZH2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene (By similarity). The PRC2/EED-EZH2 complex may also serve as a recruiting platform for DNA methyltransferases, thereby linking two epigenetic repression systems.

Bos taurus (taxid: 9913)

>sp|Q8UUP2|EEDA_XENLA Polycomb protein eed-A OS=Xenopus laevis GN=eed-a PE=1 SV=1

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 23/308 (7%)

Query: 3   YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 135 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 194

Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 195 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 251

Query: 119 GMDNTVKIWSMKEFW--TYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 171
           GMD+++K+W +      T +++S+ +   PSK    F ++ + FP F    +H NYVDC 
Sbjct: 252 GMDHSLKLWRINSLRMKTAIKESYEYN--PSKTNRPFVSQKIHFPDFSTRDIHRNYVDCV 309

Query: 172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 310 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 369

Query: 227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                A+GN+ GK++VW+L++  P       L++ +  S +RQT+ S D S +++ C+D 
Sbjct: 370 WQKMLALGNQVGKLYVWDLEAEDPHKAKCTTLTYPKCASAVRQTSFSRDSSILVAVCDDA 429

Query: 285 AIWRWDAI 292
            IWRWD +
Sbjct: 430 TIWRWDRL 437

Polycomb group (PcG) protein. Component of the prc2/eed-ezh2 complex, which methylates 'Lys-9' and 'Lys-27' of histone H3, leading to transcriptional repression of the affected target gene.

Xenopus laevis (taxid: 8355)

>sp|Q24338|ESC_DROME Polycomb protein esc OS=Drosophila melanogaster GN=esc PE=1 SV=1

 Score =  235 bits (599), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 123/307 (40%), Positives = 185/307 (60%), Gaps = 15/307 (4%)

Query: 2   CYVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEI 59
           CY D   +E FYT +W+ ++    P L A G  G+IRVIDV   +   +++GHG +INE+
Sbjct: 117 CYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRGVIRVIDVEQNEAVGNYIGHGQAINEL 176

Query: 60  RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 119
           +  P K  L++S SKD ++RLWN+Q+ +CI I  G  GHR+EVLS+DF+     RI S G
Sbjct: 177 KFHPHKLQLLLSGSKDHAIRLWNIQSHVCIAILGGVEGHRDEVLSIDFNMRGD-RIVSSG 235

Query: 120 MDNTVKIWSMK--EFWTYVEKSFTWTDLPSK--FPTKYVQFPVF-IASVHSNYVDCNRWL 174
           MD+++K+W +   EF   +E S T++   S   FPT    FP F    +H NYVDC +W 
Sbjct: 236 MDHSLKLWCLNTPEFHHKIELSNTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWF 295

Query: 175 GDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYN 229
           G+F+LSKS +N IV W+P    QS     P + +  I+ ++   EC+IWF++F  +    
Sbjct: 296 GNFVLSKSCENAIVCWKPGQLHQSFEQVKPSDSSCTIIAEFEYDECEIWFVRFGFNPWQK 355

Query: 230 AAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 287
             A+GN++GK++VWEL  S P    +  L +++S + +RQ A S D S ++  C+D  +W
Sbjct: 356 VIALGNQQGKVYVWELDPSDPEGAHMTTLHNSRSVATVRQIAFSRDASVLVYVCDDATVW 415

Query: 288 RWDAIPT 294
           RW+   T
Sbjct: 416 RWNRRQT 422

Polycomb group (PcG) protein. While PcG proteins are generally required to maintain the transcriptionally repressive state of homeotic genes throughout development, this protein is specifically required during the first 6 hours of embryogenesis to establish the repressed state. Component of the Esc/E(z) complex, which methylates 'Lys-9' and 'Lys-27' residues of histone H3, leading to transcriptional repression of the affected target gene. The Esc/E(z) complex is necessary but not sufficient for the repression of homeotic target genes, suggesting that the recruitment of the distinct PRC1 complex is also required.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
224126301	371	polycomb group protein [Populus trichoca	0.989	0.784	0.928	1e-161
449468502	370	PREDICTED: polycomb group protein FIE2-l	0.993	0.789	0.928	1e-160
166203411	370	fertilization-independent endosperm prot	0.993	0.789	0.914	1e-159
409127977	370	fertilization independent endosperm 1 pr	0.993	0.789	0.911	1e-159
27465059	372	fertilization independent endosperm deve	0.986	0.779	0.903	1e-157
196122481	371	fertilization-independent endosperm prot	0.993	0.787	0.904	1e-157
27465061	360	fertilization independent endosperm deve	0.993	0.811	0.880	1e-156
197092477	370	fertilization-independent endosperm [Hie	0.993	0.789	0.883	1e-155
351725717	381	FIE [Glycine max] gi|158198573|gb|ABW234	0.986	0.761	0.886	1e-155
197092481	370	fertilization-independent endosperm [Hie	0.993	0.789	0.880	1e-155

>gi|224126301|ref|XP_002319805.1| polycomb group protein [Populus trichocarpa] gi|222858181|gb|EEE95728.1| polycomb group protein [Populus trichocarpa]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 271/292 (92%), Positives = 287/292 (98%), Gaps = 1/292 (0%)

Query: 3   YVDQ-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
           YVD+ K+ESFYTVSWACN+DG PF+VAGGINGI+RVI+ SNE++HKSFVGHGDSINEIRT
Sbjct: 77  YVDEDKDESFYTVSWACNIDGAPFVVAGGINGIMRVINASNEEIHKSFVGHGDSINEIRT 136

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
           QPLKPSLV+SASKDESVRLWNV TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD
Sbjct: 137 QPLKPSLVISASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196

Query: 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
           NTVKIWSMKEFWTYVEKSFTWTD PSKFPTKYVQFPVFIASVHSNYVDCNRWLGDF+LSK
Sbjct: 197 NTVKIWSMKEFWTYVEKSFTWTDCPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFMLSK 256

Query: 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241
           SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF+YNAAAIGNREGKI+
Sbjct: 257 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFNYNAAAIGNREGKIY 316

Query: 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP 293
           VWELQSSPPVLIARLSHAQSKSP+RQTAMS+DGSTILSCCEDG+IWRWD+IP
Sbjct: 317 VWELQSSPPVLIARLSHAQSKSPVRQTAMSFDGSTILSCCEDGSIWRWDSIP 368

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468502|ref|XP_004151960.1| PREDICTED: polycomb group protein FIE2-like [Cucumis sativus] gi|449531818|ref|XP_004172882.1| PREDICTED: polycomb group protein FIE2-like [Cucumis sativus]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 272/293 (92%), Positives = 283/293 (96%), Gaps = 1/293 (0%)

Query: 3   YVDQ-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
           YVD+ K+ESFYTVSWA NVDG PF+VAGGINGIIRVID  +EK++KSFVGHGDSINEIRT
Sbjct: 77  YVDEDKDESFYTVSWAYNVDGSPFVVAGGINGIIRVIDAGSEKIYKSFVGHGDSINEIRT 136

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
           QPLKPSLV+SASKDESVRLWNV TGICIL+FAGAGGHRNEVLSVDFHPSDIYRIASCGMD
Sbjct: 137 QPLKPSLVISASKDESVRLWNVHTGICILVFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196

Query: 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
           NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC+RWLGDFILSK
Sbjct: 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCSRWLGDFILSK 256

Query: 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241
           SVDNEIVLWEPKMKEQSPGEGT DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF
Sbjct: 257 SVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 316

Query: 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 294
           VWELQSSPPVLIARLSHAQSKSPIRQTAMS+DGS ILSCCEDG IWRWDA+ T
Sbjct: 317 VWELQSSPPVLIARLSHAQSKSPIRQTAMSFDGSIILSCCEDGTIWRWDAMTT 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166203411|gb|ABY84674.1| fertilization-independent endosperm protein [Nicotiana tabacum]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/293 (91%), Positives = 280/293 (95%), Gaps = 1/293 (0%)

Query: 3   YVDQ-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
           Y+D+ K+ESFYTVSWACN+DG PF+VAGGINGI+RVID  NEK+HKSFVGHGDSINEIRT
Sbjct: 77  YIDEDKDESFYTVSWACNIDGSPFIVAGGINGILRVIDAGNEKIHKSFVGHGDSINEIRT 136

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
           Q LKPSLVVSASKDESVRLWNV TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD
Sbjct: 137 QVLKPSLVVSASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196

Query: 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
           NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP+FIASVHSNYVDCNRWLGDFILSK
Sbjct: 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPIFIASVHSNYVDCNRWLGDFILSK 256

Query: 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241
           SVDNEIVLWEPKMKEQSPGEGT DILQKYPVPECDIWFIKFSCDFHY AAAIGNREGKIF
Sbjct: 257 SVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYKAAAIGNREGKIF 316

Query: 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 294
           VWELQ+SPP +IARLSH QSKSPIRQTAMS+DGSTILSCCEDG IWRWD + T
Sbjct: 317 VWELQTSPPAMIARLSHVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDVVAT 369

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|409127977|gb|AFV15391.1| fertilization independent endosperm 1 protein [Nicotiana benthamiana]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 267/293 (91%), Positives = 279/293 (95%), Gaps = 1/293 (0%)

Query: 3   YVDQ-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
           Y+D+ K+ESFYTVSWACN+DG PF+VAGGINGI+RVID  NEK+HKSFVGHGDSINEIRT
Sbjct: 77  YIDEDKDESFYTVSWACNIDGSPFIVAGGINGILRVIDAGNEKIHKSFVGHGDSINEIRT 136

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
           Q LKPSLVVSASKDESVRLWNV TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD
Sbjct: 137 QVLKPSLVVSASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196

Query: 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
           NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP+FIASVHSNYVDC RWLGDFILSK
Sbjct: 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPIFIASVHSNYVDCTRWLGDFILSK 256

Query: 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241
           SVDNEIVLWEPKMKEQSPGEGT DILQKYPVPECDIWFIKFSCDFHY AAAIGNREGKIF
Sbjct: 257 SVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYKAAAIGNREGKIF 316

Query: 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 294
           VWELQ+SPP +IARLSH QSKSPIRQTAMS+DGSTILSCCEDG IWRWD + T
Sbjct: 317 VWELQTSPPAMIARLSHVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDVVAT 369

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27465059|gb|AAN85568.1| fertilization independent endosperm development protein [Eucalyptus grandis]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/291 (90%), Positives = 279/291 (95%), Gaps = 1/291 (0%)

Query: 3   YVDQ-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
           Y+D+ K+ESFYTVSWACN+D  PF+VAGGINGIIRVID  NEK+H+SFVGHGDSINEIRT
Sbjct: 77  YIDEDKDESFYTVSWACNIDRTPFVVAGGINGIIRVIDAGNEKIHRSFVGHGDSINEIRT 136

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
           QPL PSL+VSASKDESVRLWNV TGICILIFAGAGGHRNEVLSVDFHPSD YRIASCGMD
Sbjct: 137 QPLNPSLIVSASKDESVRLWNVHTGICILIFAGAGGHRNEVLSVDFHPSDKYRIASCGMD 196

Query: 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
           NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA VHSNYVDCNRWLGDF+LSK
Sbjct: 197 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAPVHSNYVDCNRWLGDFVLSK 256

Query: 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241
           SVDNEIVLWEPKMKEQSPGEG+ DILQKYPVPECDIWFIKFSCDFHY++ AIGNREGKI+
Sbjct: 257 SVDNEIVLWEPKMKEQSPGEGSVDILQKYPVPECDIWFIKFSCDFHYHSIAIGNREGKIY 316

Query: 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292
           VWELQSSPPVLIA+LSH+QSKSPIRQTAMS+DGSTILSCCEDG IWRWDAI
Sbjct: 317 VWELQSSPPVLIAKLSHSQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDAI 367

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|196122481|gb|ACG69840.1| fertilization-independent endosperm protein [Malus x domestica]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/293 (90%), Positives = 279/293 (95%), Gaps = 1/293 (0%)

Query: 3   YVDQ-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
           Y+D+ K+ESFYTVSWACN DG P LVAGGINGI+RVID  +EK+ KSFVGHGDSINEIRT
Sbjct: 78  YIDEDKDESFYTVSWACNSDGSPLLVAGGINGIMRVIDCGSEKIDKSFVGHGDSINEIRT 137

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
           QPLK SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD
Sbjct: 138 QPLKSSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 197

Query: 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
           NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS+H+NYVDCNRWLGDF+LSK
Sbjct: 198 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASIHTNYVDCNRWLGDFLLSK 257

Query: 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241
           SVDNEIVLWEPKMKEQSPGEGT DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF
Sbjct: 258 SVDNEIVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 317

Query: 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 294
           +WELQSSPPVLIA+L H QSKSPIRQTA S+DGSTILSCCEDG IWRWDA+ +
Sbjct: 318 IWELQSSPPVLIAKLLHPQSKSPIRQTATSFDGSTILSCCEDGTIWRWDAMES 370

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27465061|gb|AAN85567.1| fertilization independent endosperm development protein [Catalpa speciosa]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 258/293 (88%), Positives = 279/293 (95%), Gaps = 1/293 (0%)

Query: 3   YVDQ-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
           Y+D+ K+ESFYTVSWACN+DG PFLVAGG+NGIIRVID  NEK++KSFVGHGDSINEIRT
Sbjct: 67  YIDEDKDESFYTVSWACNIDGTPFLVAGGLNGIIRVIDTGNEKIYKSFVGHGDSINEIRT 126

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
           QPLKPSLVVSASKDESVRLWN+ TGICILIF+GAGGHRNEVLSVDFHPSDIYRIASCGMD
Sbjct: 127 QPLKPSLVVSASKDESVRLWNIHTGICILIFSGAGGHRNEVLSVDFHPSDIYRIASCGMD 186

Query: 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
           NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP+FIASVH+NYVDCNRW+GDF+LSK
Sbjct: 187 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPIFIASVHTNYVDCNRWIGDFMLSK 246

Query: 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241
           SVDNE+VLWEPKMKEQSPGEGT DILQKYPVPECDIWFIKFSCDFHY  AA+GNREGKI+
Sbjct: 247 SVDNELVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKFSCDFHYKTAAVGNREGKIY 306

Query: 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 294
           VWE+Q++PPVLIARLSH QSKSPIR TAMSYDGSTIL CCEDG IWRWD + +
Sbjct: 307 VWEVQANPPVLIARLSHIQSKSPIRLTAMSYDGSTILCCCEDGTIWRWDVVAS 359

Source: Catalpa speciosa

Species: Catalpa speciosa

Genus: Catalpa

Family: Bignoniaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197092477|gb|ABZ85627.2| fertilization-independent endosperm [Hieracium pilosella]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/293 (88%), Positives = 274/293 (93%), Gaps = 1/293 (0%)

Query: 3   YVDQ-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
           Y+D+ K+ESFYTVSWAC+ DG P LVAGGINGIIRVID  NEK+HKSFVGHGDS+NEIRT
Sbjct: 77  YIDEDKDESFYTVSWACDADGTPLLVAGGINGIIRVIDAGNEKIHKSFVGHGDSVNEIRT 136

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
           Q L+PSLV+SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD
Sbjct: 137 QALRPSLVLSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196

Query: 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
           NTVKIWSMKEFWTYVE+SFTW   PS+FPTKYVQFPV IAS+H+NYVDCNRWLGDFILSK
Sbjct: 197 NTVKIWSMKEFWTYVERSFTWEGSPSQFPTKYVQFPVLIASIHTNYVDCNRWLGDFILSK 256

Query: 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241
           SVDNE VLWEPKMKEQSPGEGT DILQKYPVPECDIWFIK SCDFHYNAAAIGNREGKIF
Sbjct: 257 SVDNEFVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKLSCDFHYNAAAIGNREGKIF 316

Query: 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 294
           VWELQ+SPP LIARLSH QSKSPIRQTAMS+DGSTILSCCEDG IWRWD + T
Sbjct: 317 VWELQTSPPSLIARLSHVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDTVAT 369

Source: Hieracium pilosella

Species: Hieracium pilosella

Genus: Hieracium

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725717|ref|NP_001237614.1| FIE [Glycine max] gi|158198573|gb|ABW23440.1| FIE [Glycine max]

 Score =  552 bits (1423), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 257/290 (88%), Positives = 274/290 (94%)

Query: 3   YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQ 62
           YVD+ +ESFYTVSWACNVDG PF+VAGGING+ RVIDV +EK+HKSFVGHGDS+NEIRTQ
Sbjct: 87  YVDEDDESFYTVSWACNVDGTPFVVAGGINGVTRVIDVGSEKIHKSFVGHGDSVNEIRTQ 146

Query: 63  PLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN 122
            LKPSLV+SASKDESVRLWNV TGICILIF GAGGHRNEVLSVDFHPSDIYRIASCGMDN
Sbjct: 147 TLKPSLVISASKDESVRLWNVHTGICILIFVGAGGHRNEVLSVDFHPSDIYRIASCGMDN 206

Query: 123 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS 182
           TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV+ ASVH NYVDCNRWLGDFILSKS
Sbjct: 207 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVYNASVHLNYVDCNRWLGDFILSKS 266

Query: 183 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV 242
           VDNEI+LWEPK+KEQ+PGEG  DILQKYPVPECDIWFIKFSCDFH+N AA+GNREGKIFV
Sbjct: 267 VDNEIILWEPKVKEQTPGEGVVDILQKYPVPECDIWFIKFSCDFHFNLAAVGNREGKIFV 326

Query: 243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292
           WELQSSPPVL+ARLSH QSKSPIRQTA S+DGSTILSCCEDG IWRWD +
Sbjct: 327 WELQSSPPVLVARLSHPQSKSPIRQTATSFDGSTILSCCEDGTIWRWDDV 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197092481|gb|ABZ85630.2| fertilization-independent endosperm [Hieracium piloselloides]

 Score =  551 bits (1421), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 258/293 (88%), Positives = 274/293 (93%), Gaps = 1/293 (0%)

Query: 3   YVDQ-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
           Y+D+ K+ESFYTVSWAC+ DG P LVAGGINGIIRVID  NEK+HKSFVGHGDS+NEIRT
Sbjct: 77  YIDEDKDESFYTVSWACDADGTPLLVAGGINGIIRVIDAGNEKIHKSFVGHGDSVNEIRT 136

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
           Q L+PSLV+SASKDESVRLWNV+TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD
Sbjct: 137 QALRPSLVLSASKDESVRLWNVETGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 196

Query: 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
           NTVKIWSMKEFWTYVE+SFTW   PS+FPTKYVQFPV IAS+H+NYVDCNRWLGDFILSK
Sbjct: 197 NTVKIWSMKEFWTYVERSFTWEGSPSQFPTKYVQFPVLIASIHTNYVDCNRWLGDFILSK 256

Query: 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241
           SVDNE VLWEPKMKEQSPGEGT DILQKYPVPECDIWFIK SCDFHYNAAAIGNREGKIF
Sbjct: 257 SVDNEFVLWEPKMKEQSPGEGTVDILQKYPVPECDIWFIKLSCDFHYNAAAIGNREGKIF 316

Query: 242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT 294
           VWELQ+SPP LIARLSH QSKSPIRQTAMS+DGSTILSCCEDG IWRWD + T
Sbjct: 317 VWELQTSPPSLIARLSHVQSKSPIRQTAMSFDGSTILSCCEDGTIWRWDTVAT 369

Source: Hieracium piloselloides

Species: Hieracium piloselloides

Genus: Hieracium

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2091876	369	FIE "AT3G20740" [Arabidopsis t	0.986	0.785	0.793	1.1e-133
UNIPROTKB|Q26458	425	esc "Polycomb protein esc" [Dr	0.979	0.677	0.402	1.6e-61
FB|FBgn0032391	462	escl "escl" [Drosophila melano	0.979	0.623	0.409	4.3e-61
UNIPROTKB|Q8UUP2	438	eed-a "Polycomb protein eed-A"	0.969	0.650	0.405	7.1e-61
FB|FBgn0000588	425	esc "extra sexcombs" [Drosophi	0.979	0.677	0.402	9e-61
UNIPROTKB|Q3SZ25	441	EED "Polycomb protein EED" [Bo	0.969	0.646	0.405	9e-61
UNIPROTKB|F1PP86	441	EED "Uncharacterized protein"	0.969	0.646	0.405	9e-61
UNIPROTKB|O75530	441	EED "Polycomb protein EED" [Ho	0.969	0.646	0.405	9e-61
MGI|MGI:95286	441	Eed "embryonic ectoderm develo	0.969	0.646	0.405	9e-61
RGD|1309782	500	Eed "embryonic ectoderm develo	0.969	0.57	0.405	9e-61

TAIR|locus:2091876 FIE "AT3G20740" [Arabidopsis thaliana (taxid:3702)]

 Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
 Identities = 231/291 (79%), Positives = 262/291 (90%)

Query:     3 YVDQ-KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
             Y D+ KEESFYTVSWAC V+G P++ AGG+ GIIRVIDV++E +HKS VGHGDS+NEIRT
Sbjct:    77 YADEDKEESFYTVSWACGVNGNPYVAAGGVKGIIRVIDVNSETIHKSLVGHGDSVNEIRT 136

Query:    62 QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
             QPLKP LV++ASKDESVRLWNV+TGICILIFAGAGGHR EVLSVDFHPSDIYR ASCGMD
Sbjct:   137 QPLKPQLVITASKDESVRLWNVETGICILIFAGAGGHRYEVLSVDFHPSDIYRFASCGMD 196

Query:   122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
              T+KIWSMKEFWTYVEKSFTWTD PSKFPTK+VQFPVF AS+H+NYVDCNRW GDFILSK
Sbjct:   197 TTIKIWSMKEFWTYVEKSFTWTDDPSKFPTKFVQFPVFTASIHTNYVDCNRWFGDFILSK 256

Query:   182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF 241
             SVDNEI+LWEP++KE SPGEG +D+L +YPVP CDIWFIKFSCD H ++ AIGN+EGK++
Sbjct:   257 SVDNEILLWEPQLKENSPGEGASDVLLRYPVPMCDIWFIKFSCDLHLSSVAIGNQEGKVY 316

Query:   242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292
             VW+L+S PPVLI +LSH QSKS IRQTAMS DGSTIL+CCEDG IWRWD I
Sbjct:   317 VWDLKSCPPVLITKLSHNQSKSVIRQTAMSVDGSTILACCEDGTIWRWDVI 367

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0043078 "polar nucleus" evidence=IDA

GO:2000014 "regulation of endosperm development" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0000003 "reproduction" evidence=IMP

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=RCA;IMP

GO:0016571 "histone methylation" evidence=RCA;IMP

GO:0009409 "response to cold" evidence=IEP

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0010048 "vernalization response" evidence=RCA

UNIPROTKB|Q26458 esc "Polycomb protein esc" [Drosophila virilis (taxid:7244)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 122/303 (40%), Positives = 185/303 (61%)

Query:     2 CYVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEI 59
             CY D   +E FYT +W+ ++    P L A G  G+IRVID+   +   +++GHG +INE+
Sbjct:   117 CYADPDPDEVFYTCAWSYDLKTSAPLLAAAGYRGVIRVIDIEQNEAVDNYIGHGQAINEL 176

Query:    60 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 119
             +  P K  L++S SKD ++RLWN+QT +CI IF G  GHR+EVLS+DF+     RI S G
Sbjct:   177 KFHPHKLQLLLSGSKDHAIRLWNIQTHVCIAIFGGVEGHRDEVLSIDFNMRGD-RIVSSG 235

Query:   120 MDNTVKIWSM--KEFWTYVEKSFTWTDLPSK--FPTKYVQFPVFIA-SVHSNYVDCNRWL 174
             MD+++K+W +  +EF   +E S T++   S   FPT    FP F    +H NYVDC +W 
Sbjct:   236 MDHSLKLWCLNTQEFQHKIELSQTFSQEKSTLPFPTITKHFPDFSTRDIHRNYVDCVQWF 295

Query:   175 GDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYN 229
             G+F+LSKS +N IV W+P    QS     P + +  I+ ++   EC+IWF++F  +    
Sbjct:   296 GNFVLSKSCENAIVCWKPGQLHQSFEQLKPSDSSCTIIAEFEYDECEIWFVRFGFNPWQK 355

Query:   230 AAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 287
               A+GN++GK++VWE+  S P    +  L + +S + +RQ A S D S ++  C+D  +W
Sbjct:   356 VIALGNQQGKVYVWEMDPSDPEGAHMTTLHNLRSVATVRQIAFSRDASVLVYVCDDATVW 415

Query:   288 RWD 290
             RW+
Sbjct:   416 RWN 418

GO:0000790 "nuclear chromatin" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=ISS

FB|FBgn0032391 escl "escl" [Drosophila melanogaster (taxid:7227)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 125/305 (40%), Positives = 182/305 (59%)

Query:     3 YVD-QKEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
             Y D   +ESFYT +W+ + V G P L A G  G+IR+ +    +  K+++GHG +INE++
Sbjct:   159 YADPDTDESFYTCAWSYDSVTGDPVLAAAGYRGVIRIFNPVKHQCSKNYIGHGHAINELK 218

Query:    61 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH-PSDIYRIASCG 119
               P +P L++S SKD S+RLWN+Q+ +C+ +F G  GHR+EVLSVDF    D  RI S G
Sbjct:   219 FHPTRPQLLLSGSKDHSLRLWNIQSDVCVAVFGGVEGHRDEVLSVDFDLRGD--RIMSSG 276

Query:   120 MDNTVKIWSMK--EFWTYVEKS--FTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWL 174
             MD+++K+W +   +    +E S  F+       FPT    FP F    +H NYVDC +W 
Sbjct:   277 MDHSLKLWRLDKPDIKEAIELSSGFSPNKNTGPFPTIKEHFPDFSTRDIHRNYVDCVQWF 336

Query:   175 GDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDFHYN 229
             GDF+ SKS +N IV W+P K+ E      P E    +L  +    C+IWF++F+ +    
Sbjct:   337 GDFVFSKSCENSIVCWKPGKLSESWHEIKPQESATTVLHHFDYKMCEIWFVRFAFNAWQK 396

Query:   230 AAAIGNREGKIFVWELQSSPPVLI--ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 287
               A+GN+ G  FVWEL  + P L   ++L H +S S IRQT+ S DGS ++  C+D  +W
Sbjct:   397 ILALGNQLGTTFVWELDCNDPNLTKCSQLVHPKSNSTIRQTSFSKDGSILVCVCDDSTVW 456

Query:   288 RWDAI 292
             RWD +
Sbjct:   457 RWDRV 461

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0042054 "histone methyltransferase activity" evidence=IDA

GO:0070734 "histone H3-K27 methylation" evidence=IGI

UNIPROTKB|Q8UUP2 eed-a "Polycomb protein eed-A" [Xenopus laevis (taxid:8355)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 125/308 (40%), Positives = 190/308 (61%)

Query:     3 YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
             YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct:   135 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 194

Query:    61 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
               P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct:   195 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 251

Query:   119 GMDNTVKIWSMKEFW--TYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNYVDCN 171
             GMD+++K+W +      T +++S+ +   PSK    F ++ + FP F    +H NYVDC 
Sbjct:   252 GMDHSLKLWRINSLRMKTAIKESYEYN--PSKTNRPFVSQKIHFPDFSTRDIHRNYVDCV 309

Query:   172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
             RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct:   310 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 369

Query:   227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                  A+GN+ GK++VW+L++  P       L++ +  S +RQT+ S D S +++ C+D 
Sbjct:   370 WQKMLALGNQVGKLYVWDLEAEDPHKAKCTTLTYPKCASAVRQTSFSRDSSILVAVCDDA 429

Query:   285 AIWRWDAI 292
              IWRWD +
Sbjct:   430 TIWRWDRL 437

GO:0035098 "ESC/E(Z) complex" evidence=ISS

FB|FBgn0000588 esc "extra sexcombs" [Drosophila melanogaster (taxid:7227)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 122/303 (40%), Positives = 184/303 (60%)

Query:     2 CYVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEI 59
             CY D   +E FYT +W+ ++    P L A G  G+IRVIDV   +   +++GHG +INE+
Sbjct:   117 CYADPDPDEVFYTCAWSYDLKTSSPLLAAAGYRGVIRVIDVEQNEAVGNYIGHGQAINEL 176

Query:    60 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 119
             +  P K  L++S SKD ++RLWN+Q+ +CI I  G  GHR+EVLS+DF+     RI S G
Sbjct:   177 KFHPHKLQLLLSGSKDHAIRLWNIQSHVCIAILGGVEGHRDEVLSIDFNMRGD-RIVSSG 235

Query:   120 MDNTVKIWSMK--EFWTYVEKSFTWTDLPSK--FPTKYVQFPVFIA-SVHSNYVDCNRWL 174
             MD+++K+W +   EF   +E S T++   S   FPT    FP F    +H NYVDC +W 
Sbjct:   236 MDHSLKLWCLNTPEFHHKIELSNTFSQEKSTLPFPTVTKHFPDFSTRDIHRNYVDCVQWF 295

Query:   175 GDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYN 229
             G+F+LSKS +N IV W+P    QS     P + +  I+ ++   EC+IWF++F  +    
Sbjct:   296 GNFVLSKSCENAIVCWKPGQLHQSFEQVKPSDSSCTIIAEFEYDECEIWFVRFGFNPWQK 355

Query:   230 AAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW 287
               A+GN++GK++VWEL  S P    +  L +++S + +RQ A S D S ++  C+D  +W
Sbjct:   356 VIALGNQQGKVYVWELDPSDPEGAHMTTLHNSRSVATVRQIAFSRDASVLVYVCDDATVW 415

Query:   288 RWD 290
             RW+
Sbjct:   416 RWN 418

GO:0005634 "nucleus" evidence=IDA

GO:0006342 "chromatin silencing" evidence=ISS;NAS;IPI

GO:0016458 "gene silencing" evidence=IGI;ISS;IMP

GO:0046974 "histone methyltransferase activity (H3-K9 specific)" evidence=IC

GO:0046976 "histone methyltransferase activity (H3-K27 specific)" evidence=IC;IMP

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0016571 "histone methylation" evidence=IDA

GO:0000790 "nuclear chromatin" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0031491 "nucleosome binding" evidence=IDA

GO:0031062 "positive regulation of histone methylation" evidence=IDA

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0042054 "histone methyltransferase activity" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0070734 "histone H3-K27 methylation" evidence=IMP

UNIPROTKB|Q3SZ25 EED "Polycomb protein EED" [Bos taurus (taxid:9913)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 125/308 (40%), Positives = 190/308 (61%)

Query:     3 YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
             YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct:   138 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 197

Query:    61 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
               P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct:   198 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 254

Query:   119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNYVDCN 171
             GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct:   255 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 312

Query:   172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
             RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct:   313 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 372

Query:   227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                  A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct:   373 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 432

Query:   285 AIWRWDAI 292
             +IWRWD +
Sbjct:   433 SIWRWDRL 440

GO:0035098 "ESC/E(Z) complex" evidence=ISS

GO:0045120 "pronucleus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PP86 EED "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 125/308 (40%), Positives = 190/308 (61%)

Query:     3 YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
             YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct:   138 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 197

Query:    61 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
               P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct:   198 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 254

Query:   119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNYVDCN 171
             GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct:   255 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 312

Query:   172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
             RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct:   313 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 372

Query:   227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                  A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct:   373 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 432

Query:   285 AIWRWDAI 292
             +IWRWD +
Sbjct:   433 SIWRWDRL 440

GO:0045120 "pronucleus" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0042054 "histone methyltransferase activity" evidence=IEA

GO:0035098 "ESC/E(Z) complex" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

UNIPROTKB|O75530 EED "Polycomb protein EED" [Homo sapiens (taxid:9606)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 125/308 (40%), Positives = 190/308 (61%)

Query:     3 YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
             YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct:   138 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 197

Query:    61 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
               P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct:   198 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 254

Query:   119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNYVDCN 171
             GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct:   255 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 312

Query:   172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
             RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct:   313 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 372

Query:   227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                  A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct:   373 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 432

Query:   285 AIWRWDAI 292
             +IWRWD +
Sbjct:   433 SIWRWDRL 440

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001739 "sex chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0005634 "nucleus" evidence=NAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0035098 "ESC/E(Z) complex" evidence=IDA

GO:0042054 "histone methyltransferase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

MGI|MGI:95286 Eed "embryonic ectoderm development" [Mus musculus (taxid:10090)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 125/308 (40%), Positives = 190/308 (61%)

Query:     3 YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
             YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct:   138 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 197

Query:    61 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
               P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct:   198 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 254

Query:   119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNYVDCN 171
             GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct:   255 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 312

Query:   172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
             RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct:   313 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 372

Query:   227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                  A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct:   373 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 432

Query:   285 AIWRWDAI 292
             +IWRWD +
Sbjct:   433 SIWRWDRL 440

GO:0001739 "sex chromatin" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005694 "chromosome" evidence=IEA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IMP

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016571 "histone methylation" evidence=IMP

GO:0035098 "ESC/E(Z) complex" evidence=ISO;IDA

GO:0042054 "histone methyltransferase activity" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0045120 "pronucleus" evidence=IDA

GO:0061087 "positive regulation of histone H3-K27 methylation" evidence=IMP

RGD|1309782 Eed "embryonic ectoderm development" [Rattus norvegicus (taxid:10116)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 125/308 (40%), Positives = 190/308 (61%)

Query:     3 YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
             YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct:   197 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 256

Query:    61 TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
               P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct:   257 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 313

Query:   119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVFIA-SVHSNYVDCN 171
             GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct:   314 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 371

Query:   172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
             RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct:   372 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 431

Query:   227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                  A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct:   432 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 491

Query:   285 AIWRWDAI 292
             +IWRWD +
Sbjct:   492 SIWRWDRL 499

GO:0001739 "sex chromatin" evidence=IEA;ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IEA;ISO

GO:0016571 "histone methylation" evidence=ISO

GO:0035098 "ESC/E(Z) complex" evidence=IEA;ISO

GO:0042054 "histone methyltransferase activity" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0045120 "pronucleus" evidence=IEA;ISO

GO:0061087 "positive regulation of histone H3-K27 methylation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LT47	FIE_ARATH	No assigned EC number	0.7938	0.9863	0.7859	yes	no
Q8VZY6	FIE2_MAIZE	No assigned EC number	0.8299	0.9931	0.7704	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PGE901	polycomb group protein (371 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	SDG913	SubName- Full=Putative uncharacterized protein; (812 aa)					•		•		0.613
	RBL901	SubName- Full=Putative uncharacterized protein;; Regulator of biological processes that recruit [...] (965 aa)					•		•		0.561
	SDG909	SET domain protein (852 aa)					•		•		0.529
	SDG910	SET domain protein (892 aa)					•		•		0.449
	SDG916	SET domain protein (917 aa)					•		•		0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-19
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-08
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	8e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 98.6 bits (246), Expect = 4e-24
 Identities = 64/268 (23%), Positives = 114/268 (42%), Gaps = 45/268 (16%)

Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
           +L +G  +  IR+ D+   +  ++  GH   ++ +   P    ++ S+S+D+++++W+V+
Sbjct: 65  YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVE 123

Query: 85  TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 144
           TG C+       GH + V SV F P   + +AS   D T+K+W ++        + T   
Sbjct: 124 TGKCLTTL---RGHTDWVNSVAFSPDGTF-VASSSQDGTIKLWDLRTG--KCVATLT--- 174

Query: 145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD--FILSKSVDNEIVLWEPKMKEQSPGEG 202
                              H+  V+   +  D   +LS S D  I LW+    +      
Sbjct: 175 ------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC----- 211

Query: 203 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK 262
               L      E  +  + FS D +  A+  G+ +G I VW+L++     +  LS     
Sbjct: 212 ----LGTLRGHENGVNSVAFSPDGYLLAS--GSEDGTIRVWDLRT--GECVQTLS--GHT 261

Query: 263 SPIRQTAMSYDGSTILSCCEDGAIWRWD 290
           + +   A S DG  + S   DG I  WD
Sbjct: 262 NSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.8 bits (213), Expect = 2e-19
 Identities = 55/248 (22%), Positives = 96/248 (38%), Gaps = 45/248 (18%)

Query: 45  LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS 104
           L ++  GH   +  +   P    L+ + S D ++++W+++TG  +       GH   V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLK---GHTGPVRD 56

Query: 105 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH 164
           V       Y +AS   D T+++W ++      E   T T                    H
Sbjct: 57  VAASADGTY-LASGSSDKTIRLWDLETG----ECVRTLTG-------------------H 92

Query: 165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 222
           ++YV    +   G  + S S D  I +W+ +         T   L         +  + F
Sbjct: 93  TSYVSSVAFSPDGRILSSSSRDKTIKVWDVE---------TGKCLTTLRGHTDWVNSVAF 143

Query: 223 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE 282
           S D  +   A  +++G I +W+L++     +A L+       +   A S DG  +LS   
Sbjct: 144 SPDGTF--VASSSQDGTIKLWDLRTG--KCVATLTG--HTGEVNSVAFSPDGEKLLSSSS 197

Query: 283 DGAIWRWD 290
           DG I  WD
Sbjct: 198 DGTIKLWD 205

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 80.5 bits (197), Expect = 6e-17
 Identities = 62/311 (19%), Positives = 117/311 (37%), Gaps = 39/311 (12%)

Query: 3   YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRT 61
                + S   ++ +        L +  ++G +++ D+S   KL ++  GH +S+  +  
Sbjct: 104 LEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF 163

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
            P    L   +S D +++LW+++TG  +   A   GH + V S+ F P     IAS   D
Sbjct: 164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA---GHTDPVSSLAFSPDGGLLIASGSSD 220

Query: 122 NTVKIWSMKEF----------WTYVEKSFTWTDLPSK----------FPTKYVQFPVFIA 161
            T+++W +                V  SF+                 +  +     +   
Sbjct: 221 GTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL 280

Query: 162 SVHSNYVDCNRWLGD--FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 219
           S HS+ V    +  D   + S S D  + LW+ +  +                 E  +  
Sbjct: 281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGH-------EGPVSS 333

Query: 220 IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS 279
           + FS D     +   + +G I +W+L++  P+           S +   + S DG  + S
Sbjct: 334 LSFSPDGSLLVSGGSD-DGTIRLWDLRTGKPLKTLE-----GHSNVLSVSFSPDGRVVSS 387

Query: 280 CCEDGAIWRWD 290
              DG +  WD
Sbjct: 388 GSTDGTVRLWD 398

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.9 bits (128), Expect = 4e-08
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 6/114 (5%)

Query: 17  ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE 76
           + + DG   +  G  +G IR+ D+   K  K+  GH  ++  +   P    +V S S D 
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDG 392

Query: 77  SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 130
           +VRLW++ TG  +       GH + V S+DF P     +AS   DNT+++W +K
Sbjct: 393 TVRLWDLSTGSLLRNL---DGHTSRVTSLDFSPDGKS-LASGSSDNTIRLWDLK 442

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 49.6 bits (118), Expect = 8e-07
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 20/121 (16%)

Query: 23  IPFLVAGGINGIIRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASKDESVR 79
           +P+ V GG  G+I  I + N+      +   GH  SI +++  P    ++ S S+D ++R
Sbjct: 43  VPWEVEGG--GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIR 100

Query: 80  LWN----------VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 129
           +W           ++   CIL      GH+ ++  +D++P + Y + S G D+ V IW +
Sbjct: 101 VWEIPHNDESVKEIKDPQCIL-----KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Query: 130 K 130
           +
Sbjct: 156 E 156

Length = 568

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 43/198 (21%), Positives = 71/198 (35%), Gaps = 43/198 (21%)

Query: 97  GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW---TYVEKSFTWTDLPSKFPTKY 153
           GH   V  V F P D   +A+   D T+K+W ++      T    +    D+        
Sbjct: 7   GHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDV-------- 57

Query: 154 VQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP 213
                  AS    Y          + S S D  I LW+ +  E          ++     
Sbjct: 58  ------AASADGTY----------LASGSSDKTIRLWDLETGE---------CVRTLTGH 92

Query: 214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD 273
              +  + FS D    ++   +R+  I VW++++   +   R  H      +   A S D
Sbjct: 93  TSYVSSVAFSPDGRILSS--SSRDKTIKVWDVETGKCLTTLR-GH---TDWVNSVAFSPD 146

Query: 274 GSTILSCCEDGAIWRWDA 291
           G+ + S  +DG I  WD 
Sbjct: 147 GTFVASSSQDGTIKLWDL 164

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 97  GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 128
           GH   V SV F P     +AS   D TV++W 
Sbjct: 9   GHTGPVTSVAFSPDGNL-LASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 7   KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP 66
            E    +V++  + DG   L +G  +G IRV D+   +  ++  GH +S+  +   P   
Sbjct: 218 HENGVNSVAF--SPDGY-LLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274

Query: 67  SLVVSASKDESVRLWN 82
            L  S S D ++R+W+
Sbjct: 275 RL-ASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 44/222 (19%), Positives = 72/222 (32%), Gaps = 43/222 (19%)

Query: 97  GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP-SKFPTKYVQ 155
           GH + + S+ F P     + S   D T+K+W +      ++      D   SK       
Sbjct: 63  GHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD 121

Query: 156 FPVFIASV------------------------HSNYVDCNRWLGD---FILSKSVDNEIV 188
               + +                         HS  V    +  D        S+D  I 
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Query: 189 LWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
           LW+ +         T   L         +  + FS D     A+  + +G I +W+L + 
Sbjct: 182 LWDLR---------TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS-DGTIRLWDLSTG 231

Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290
             +      H+ S      ++ S DGS + S   DG I  WD
Sbjct: 232 KLLRSTLSGHSDSVV----SSFSPDGSLLASGSSDGTIRLWD 269

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 85  TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 128
           +G  +    G   H   V SV F P     +AS   D T+K+W 
Sbjct: 1   SGELLKTLKG---HTGPVTSVAFSPDG-KYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 41.2 bits (95), Expect = 4e-04
 Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
            + +G  +G +R+ D+S   L ++  GH   +  +   P     + S S D ++RLW+++
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWDLK 442

Query: 85  TGICILIFA 93
           T +  + F+
Sbjct: 443 TSLKSVSFS 451

Length = 466

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 50  VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ----TGICILIFAGAGGHRNEVLSV 105
           +G    I ++   P  P  + +AS+D ++  W +     T           GH  +V  V
Sbjct: 72  LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIV 131

Query: 106 DFHPSDIYRIASCGMDNTVKIW 127
            FHPS +  +AS G D  V +W
Sbjct: 132 SFHPSAMNVLASAGADMVVNVW 153

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
PTZ00421	493	coronin; Provisional	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0647	347	consensus mRNA export protein (contains WD40 repea	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0973	942	consensus Histone transcription regulator HIRA, WD	100.0
KOG0308	735	consensus Conserved WD40 repeat-containing protein	100.0
KOG0641	350	consensus WD40 repeat protein [General function pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0302	440	consensus Ribosome Assembly protein [General funct	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0289	506	consensus mRNA splicing factor [General function p	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0269	839	consensus WD40 repeat-containing protein [Function	100.0
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0772	641	consensus Uncharacterized conserved protein, conta	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.98
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.98
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG1274	933	consensus WD40 repeat protein [General function pr	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.97
KOG2096	420	consensus WD40 repeat protein [General function pr	99.97
KOG0267	825	consensus Microtubule severing protein katanin p80	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG1273	405	consensus WD40 repeat protein [General function pr	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.96
KOG1539	910	consensus WD repeat protein [General function pred	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.96
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.95
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG1539	910	consensus WD repeat protein [General function pred	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.95
KOG2048	691	consensus WD40 repeat protein [General function pr	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.94
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.94
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.94
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.94
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.94
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.94
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.94
KOG1188	376	consensus WD40 repeat protein [General function pr	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.93
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.93
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.93
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.93
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.93
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.92
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.92
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.92
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.92
KOG4227	609	consensus WD40 repeat protein [General function pr	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.92
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.91
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.91
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0649	325	consensus WD40 repeat protein [General function pr	99.9
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.89
COG2319	466	FOG: WD40 repeat [General function prediction only	99.89
KOG1310	758	consensus WD40 repeat protein [General function pr	99.88
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.87
KOG1310	758	consensus WD40 repeat protein [General function pr	99.87
KOG1963	792	consensus WD40 repeat protein [General function pr	99.86
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.86
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG1334	559	consensus WD40 repeat protein [General function pr	99.86
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.85
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.85
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.84
PRK11028	330	6-phosphogluconolactonase; Provisional	99.83
KOG1963	792	consensus WD40 repeat protein [General function pr	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.82
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.82
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.81
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.8
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
PRK11028	330	6-phosphogluconolactonase; Provisional	99.79
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.78
KOG2139	445	consensus WD40 repeat protein [General function pr	99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
PRK01742	429	tolB translocation protein TolB; Provisional	99.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.76
KOG2321	703	consensus WD40 repeat protein [General function pr	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.76
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.76
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.75
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.75
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.75
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.74
KOG2139	445	consensus WD40 repeat protein [General function pr	99.73
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.72
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.7
PRK05137	435	tolB translocation protein TolB; Provisional	99.69
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.68
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.68
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.67
PRK04922	433	tolB translocation protein TolB; Provisional	99.66
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.66
PRK03629	429	tolB translocation protein TolB; Provisional	99.66
PRK02889	427	tolB translocation protein TolB; Provisional	99.66
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.65
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.63
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.6
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.6
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.59
PRK05137	435	tolB translocation protein TolB; Provisional	99.59
KOG1334	559	consensus WD40 repeat protein [General function pr	99.59
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.59
KOG4547	541	consensus WD40 repeat-containing protein [General	99.58
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.56
PRK02889	427	tolB translocation protein TolB; Provisional	99.56
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.56
KOG4547	541	consensus WD40 repeat-containing protein [General	99.55
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.53
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.52
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.5
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
PRK00178	430	tolB translocation protein TolB; Provisional	99.49
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.49
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.48
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.45
PRK04792	448	tolB translocation protein TolB; Provisional	99.44
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.44
PRK04792	448	tolB translocation protein TolB; Provisional	99.43
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.43
KOG2315	566	consensus Predicted translation initiation factor	99.42
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.41
PRK00178	430	tolB translocation protein TolB; Provisional	99.41
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.4
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.39
PRK01029	428	tolB translocation protein TolB; Provisional	99.39
KOG2695	425	consensus WD40 repeat protein [General function pr	99.39
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.37
KOG2314	698	consensus Translation initiation factor 3, subunit	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.35
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.35
KOG2695	425	consensus WD40 repeat protein [General function pr	99.34
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.33
COG4946	668	Uncharacterized protein related to the periplasmic	99.32
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.32
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.32
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.32
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.32
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.31
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.3
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.28
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.26
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.24
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.24
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.24
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.23
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.21
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.21
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.21
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.2
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.19
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.17
KOG1008	783	consensus Uncharacterized conserved protein, conta	99.17
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.17
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	99.16
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.16
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.16
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.14
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.14
KOG2314	698	consensus Translation initiation factor 3, subunit	99.07
COG4946	668	Uncharacterized protein related to the periplasmic	99.06
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.05
KOG2315	566	consensus Predicted translation initiation factor	99.05
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.04
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.03
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.93
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.92
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.92
PRK04043	419	tolB translocation protein TolB; Provisional	98.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.9
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.88
PRK04043	419	tolB translocation protein TolB; Provisional	98.88
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.85
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.85
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.8
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.8
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.78
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.78
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.78
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.77
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.75
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.71
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.7
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.69
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.69
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.65
KOG3621	726	consensus WD40 repeat-containing protein [General	98.54
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.53
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.51
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.51
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.5
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.48
KOG3621	726	consensus WD40 repeat-containing protein [General	98.45
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.42
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.31
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.31
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.27
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.27
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.23
PHA02713	557	hypothetical protein; Provisional	98.19
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.18
PRK02888	635	nitrous-oxide reductase; Validated	98.14
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.14
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.13
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	98.12
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.05
KOG2444	238	consensus WD40 repeat protein [General function pr	98.04
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.03
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.01
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.96
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.96
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.94
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.91
PRK02888	635	nitrous-oxide reductase; Validated	97.9
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.86
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.83
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.83
PHA02713	557	hypothetical protein; Provisional	97.81
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.77
KOG2444	238	consensus WD40 repeat protein [General function pr	97.77
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.77
COG3391	381	Uncharacterized conserved protein [Function unknow	97.7
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.67
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.59
PHA03098	534	kelch-like protein; Provisional	97.59
KOG2395	644	consensus Protein involved in vacuole import and d	97.59
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.55
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.52
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.51
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.44
COG4590	733	ABC-type uncharacterized transport system, permeas	97.36
PHA03098	534	kelch-like protein; Provisional	97.36
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.35
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.32
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.3
PHA02790	480	Kelch-like protein; Provisional	97.27
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.26
COG3391	381	Uncharacterized conserved protein [Function unknow	97.2
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.18
PRK13616	591	lipoprotein LpqB; Provisional	97.18
KOG2395	644	consensus Protein involved in vacuole import and d	97.17
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.15
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	97.14
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.14
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.1
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.08
PHA02790	480	Kelch-like protein; Provisional	97.06
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.03
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.86
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.73
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.71
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.55
COG5276	370	Uncharacterized conserved protein [Function unknow	96.48
PRK13616	591	lipoprotein LpqB; Provisional	96.46
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.45
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.42
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.42
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.4
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.34
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.32
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.29
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.21
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.2
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.12
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.05
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.02
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.98
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.91
KOG2247	615	consensus WD40 repeat-containing protein [General	95.84
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.8
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.75
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.72
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.65
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.64
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.63
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.62
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	95.59
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.55
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	95.52
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.51
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.49
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	95.44
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.38
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.21
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	95.16
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.1
PF12768	281	Rax2: Cortical protein marker for cell polarity	94.93
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.92
COG5276	370	Uncharacterized conserved protein [Function unknow	94.9
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	94.76
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	94.72
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.65
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.63
PLN02153	341	epithiospecifier protein	94.51
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	94.42
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.42
COG5167	776	VID27 Protein involved in vacuole import and degra	94.33
PRK13684	334	Ycf48-like protein; Provisional	94.12
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.1
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	94.04
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.01
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	93.75
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	93.36
COG5167	776	VID27 Protein involved in vacuole import and degra	93.32
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	93.23
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.2
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.0
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.87
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.63
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.58
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	92.42
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.03
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	91.73
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	91.48
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	91.35
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	91.17
KOG2247	615	consensus WD40 repeat-containing protein [General	91.14
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	90.97
PLN02153	341	epithiospecifier protein	90.72
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.27
PLN02193	470	nitrile-specifier protein	90.25
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.21
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	90.2
PLN02193	470	nitrile-specifier protein	90.06
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.61
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	89.33
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.69
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.67
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	88.49
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	88.35
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	88.18
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.61
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	87.25
PRK10115	686	protease 2; Provisional	86.63
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	86.55
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	86.28
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	85.99
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	85.74
COG1520	370	FOG: WD40-like repeat [Function unknown]	85.74
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.89
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	84.75
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	84.67
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	84.46
KOG3611	737	consensus Semaphorins [Signal transduction mechani	84.29
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	84.22
KOG2714	465	consensus SETA binding protein SB1 and related pro	84.21
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.1
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	84.07
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.77
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.51
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	83.47
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	83.43
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	83.42
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	83.05
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	82.54
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	82.45

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.7e-51  Score=294.70  Aligned_cols=256  Identities=24%  Similarity=0.338  Sum_probs=222.4

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .+.+|.++|.|++|+  |+|. .|++|+.|.++|+||+.+..+..+.++|...|.|++|+| |+..||+|+.||+|++||
T Consensus       110 S~~GH~e~Vl~~~fs--p~g~-~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFS--PTGS-RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             ccCCCCCcEEEEEec--CCCc-eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEec
Confidence            356899999999998  8999 999999999999999999999999999999999999999 999999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecC----CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPS----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      ..+|+++..-  +.+|...|++++|.|-    ...+|++++.||.++|||+..                       ...+
T Consensus       186 pktg~~~g~~--l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-----------------------~~~~  240 (480)
T KOG0271|consen  186 PKTGQQIGRA--LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-----------------------GTCV  240 (480)
T ss_pred             CCCCCccccc--ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-----------------------ceEE
Confidence            9999876432  2389999999999872    457899999999999999998                       5668


Q ss_pred             EEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCC-------------------------------------
Q 022590          159 FIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPG-------------------------------------  200 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~-------------------------------------  200 (294)
                      ..+.+|..+|+|+.|- ..++++++.|++|++|+...+.....                                     
T Consensus       241 ~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~  320 (480)
T KOG0271|consen  241 RTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEE  320 (480)
T ss_pred             EEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHH
Confidence            8899999999999998 67999999999999998876432100                                     


Q ss_pred             ---------------------------------CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          201 ---------------------------------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       201 ---------------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                                                       ....+++....+|..-|+.+.|+|++  .++|+++-|..|++||.++
T Consensus       321 ~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~--r~IASaSFDkSVkLW~g~t  398 (480)
T KOG0271|consen  321 QKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG--RYIASASFDKSVKLWDGRT  398 (480)
T ss_pred             HHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc--cEEEEeecccceeeeeCCC
Confidence                                             00112233455677889999999999  6999999999999999999


Q ss_pred             CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          248 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++  ....+.  +|-.+|..++|+.|.++|++|+.|.++++|++++
T Consensus       399 Gk--~lasfR--GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  399 GK--FLASFR--GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             cc--hhhhhh--hccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence            97  444554  8999999999999999999999999999999975

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=8e-49  Score=285.60  Aligned_cols=247  Identities=18%  Similarity=0.304  Sum_probs=225.9

Q ss_pred             CCcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            1 MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         1 ~~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      ++.+++|.+.|.++.|.|-.++. -+|+++.||++++|++++..++..+.+|...|..++|+| +|++|++++.|.+-++
T Consensus       210 ~~~l~gH~~~v~~~~fhP~~~~~-~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRl  287 (459)
T KOG0272|consen  210 LQTLRGHTSRVGAAVFHPVDSDL-NLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHP-SGKFLGTASFDSTWRL  287 (459)
T ss_pred             eEEEeccccceeeEEEccCCCcc-ceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecC-CCceeeecccccchhh
Confidence            36788999999999998432344 799999999999999999999999999999999999999 9999999999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ||+.++..+....   ||...|.+++|+| +|.++++|+.|..-+|||+++                       ...+..
T Consensus       288 WD~~tk~ElL~QE---GHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRt-----------------------gr~im~  340 (459)
T KOG0272|consen  288 WDLETKSELLLQE---GHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRT-----------------------GRCIMF  340 (459)
T ss_pred             cccccchhhHhhc---ccccccceeEecC-CCceeeccCccchhheeeccc-----------------------CcEEEE
Confidence            9999998887777   8999999999999 999999999999999999999                       566888


Q ss_pred             eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      +.+|..+|.++.|+  |..+++|+.|++++|||++...         .+..++.|..-|..++|+|.. +.+|++++.|+
T Consensus       341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~---------~ly~ipAH~nlVS~Vk~~p~~-g~fL~TasyD~  410 (459)
T KOG0272|consen  341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS---------ELYTIPAHSNLVSQVKYSPQE-GYFLVTASYDN  410 (459)
T ss_pred             ecccccceeeEeECCCceEEeecCCCCcEEEeeecccc---------cceecccccchhhheEecccC-CeEEEEcccCc
Confidence            99999999999997  7899999999999999999665         578889999999999999943 37999999999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      ++++|...+.+  +...+.  +|.+.|.++.++|++++++|++.|.++++|.
T Consensus       411 t~kiWs~~~~~--~~ksLa--GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  411 TVKIWSTRTWS--PLKSLA--GHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ceeeecCCCcc--cchhhc--CCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999999886  444555  9999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.2e-48  Score=282.45  Aligned_cols=243  Identities=19%  Similarity=0.329  Sum_probs=223.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC-CCceEEEeeCCCcEEEEEcC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~   84 (294)
                      +-+.+|..+.|+  ++++ .|++|+.+|.++||+..+...+++|.+|...|.++.|+|. ++..+|+|+.||++++|++.
T Consensus       173 gd~rPis~~~fS--~ds~-~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  173 GDTRPISGCSFS--RDSK-HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             cCCCcceeeEee--cCCC-eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            456789999998  8998 9999999999999999999999999999999999999996 36789999999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      +..++..+.   +|...|..++|+| +|.+|+|++.|.+-++||+++                       ...+....+|
T Consensus       250 ~e~~l~~l~---gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~t-----------------------k~ElL~QEGH  302 (459)
T KOG0272|consen  250 QETPLQDLE---GHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLET-----------------------KSELLLQEGH  302 (459)
T ss_pred             CCcchhhhh---cchhhheeeeecC-CCceeeecccccchhhccccc-----------------------chhhHhhccc
Confidence            888888888   7999999999999 999999999999999999999                       5556778899


Q ss_pred             CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      ...|.+++|+  |.++++|+.|..-+|||++++.         .+..+.+|..+|..++|+|+|  ..||+|+.|++++|
T Consensus       303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr---------~im~L~gH~k~I~~V~fsPNG--y~lATgs~Dnt~kV  371 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR---------CIMFLAGHIKEILSVAFSPNG--YHLATGSSDNTCKV  371 (459)
T ss_pred             ccccceeEecCCCceeeccCccchhheeecccCc---------EEEEecccccceeeEeECCCc--eEEeecCCCCcEEE
Confidence            9999999996  9999999999999999999887         688889999999999999999  68999999999999


Q ss_pred             EeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEEeccCCcEEEEecCC
Q 022590          243 WELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ||++..+.  ...++  +|.+-|+.++|+| .|.+|+|++.|++++||...+
T Consensus       372 WDLR~r~~--ly~ip--AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~  419 (459)
T KOG0272|consen  372 WDLRMRSE--LYTIP--AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRT  419 (459)
T ss_pred             eeeccccc--ceecc--cccchhhheEecccCCeEEEEcccCcceeeecCCC
Confidence            99998764  44554  8899999999999 789999999999999998653

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.2e-47  Score=273.83  Aligned_cols=266  Identities=23%  Similarity=0.389  Sum_probs=222.7

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc-ceecccCcceEEEEeCCC----CCceEEEeeCCC
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPL----KPSLVVSASKDE   76 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg   76 (294)
                      ...+.|..-|.|++|+  |||+ .||+|+.||+|++||.++++++ ..+.+|...|++++|.|.    ..++||+++.||
T Consensus       151 ~t~KgH~~WVlcvaws--PDgk-~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg  227 (480)
T KOG0271|consen  151 FTCKGHKNWVLCVAWS--PDGK-KIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG  227 (480)
T ss_pred             eeecCCccEEEEEEEC--CCcc-hhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC
Confidence            3467899999999998  9999 9999999999999999988755 678999999999999873    456899999999


Q ss_pred             cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccc--------cee-------
Q 022590           77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK--------SFT-------  141 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--------~~~-------  141 (294)
                      +|+|||+..+.++..+.   +|+.+|+|++|-  +..++++|+.|++|++|+...+....+.        .+.       
T Consensus       228 ~vrIWd~~~~~~~~~ls---gHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~L  302 (480)
T KOG0271|consen  228 SVRIWDTKLGTCVRTLS---GHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVL  302 (480)
T ss_pred             CEEEEEccCceEEEEec---cCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhh
Confidence            99999999999999888   799999999996  5678999999999999998873322111        000       


Q ss_pred             ----ec--CCC-CCC----------------------------------CCceeeeceEEeecCCCceeeccee--cceE
Q 022590          142 ----WT--DLP-SKF----------------------------------PTKYVQFPVFIASVHSNYVDCNRWL--GDFI  178 (294)
Q Consensus       142 ----~~--~~~-~~~----------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  178 (294)
                          +.  +.. ...                                  .......|+....+|..-|+.+.|+  +.++
T Consensus       303 Rtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~I  382 (480)
T KOG0271|consen  303 RTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYI  382 (480)
T ss_pred             hccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEE
Confidence                00  000 000                                  0112234566778899999999997  7899


Q ss_pred             EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc
Q 022590          179 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH  258 (294)
Q Consensus       179 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  258 (294)
                      ++++.|..|++||-++++         .+..+.+|-..|+.++|+.|.  ++|++|+.|.++++|++++.+  ....++ 
T Consensus       383 ASaSFDkSVkLW~g~tGk---------~lasfRGHv~~VYqvawsaDs--RLlVS~SkDsTLKvw~V~tkK--l~~DLp-  448 (480)
T KOG0271|consen  383 ASASFDKSVKLWDGRTGK---------FLASFRGHVAAVYQVAWSADS--RLLVSGSKDSTLKVWDVRTKK--LKQDLP-  448 (480)
T ss_pred             EEeecccceeeeeCCCcc---------hhhhhhhccceeEEEEeccCc--cEEEEcCCCceEEEEEeeeee--ecccCC-
Confidence            999999999999999887         678888999999999999998  799999999999999999875  444444 


Q ss_pred             cccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          259 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       259 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                       +|...|.++.|+|||+.+++|+.|..+++|.
T Consensus       449 -Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  449 -GHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             -CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence             8999999999999999999999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.8e-44  Score=247.69  Aligned_cols=248  Identities=24%  Similarity=0.357  Sum_probs=208.1

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .+++|+..|..+..+  +||+ +.++++.|+++++||+.+++..+.|.+|...|.+++|++ +.+.+++|+.|.+|++|+
T Consensus        58 ~~~GHsH~v~dv~~s--~dg~-~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwn  133 (315)
T KOG0279|consen   58 RLTGHSHFVSDVVLS--SDGN-FALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWN  133 (315)
T ss_pred             eeeccceEecceEEc--cCCc-eEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeee
Confidence            356899999999998  9999 999999999999999999999999999999999999999 889999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCC-CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      +. +.+..++... .+.+.|+|+.|+|+. +.+|++++.|+++++||+++                       ......+
T Consensus       134 t~-g~ck~t~~~~-~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----------------------~~l~~~~  188 (315)
T KOG0279|consen  134 TL-GVCKYTIHED-SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----------------------CQLRTTF  188 (315)
T ss_pred             ec-ccEEEEEecC-CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----------------------cchhhcc
Confidence            95 4455444421 237899999999943 78899999999999999998                       4556677


Q ss_pred             ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590          162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  239 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~  239 (294)
                      .+|.+.++.+.++  |.+.++|+.||.+.+||++.++.         +..+ .+...|.+++|+|+.   +.++...+..
T Consensus       189 ~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~---------lysl-~a~~~v~sl~fspnr---ywL~~at~~s  255 (315)
T KOG0279|consen  189 IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN---------LYSL-EAFDIVNSLCFSPNR---YWLCAATATS  255 (315)
T ss_pred             ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce---------eEec-cCCCeEeeEEecCCc---eeEeeccCCc
Confidence            8899999999987  88999999999999999998762         3333 346779999999997   4444445556


Q ss_pred             EEEEeccCCCceeeeecccccc-----CCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          240 IFVWELQSSPPVLIARLSHAQS-----KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |+|||+.+...+....+...+.     .....+++|++||+.|++|..|+.|++|.+.
T Consensus       256 IkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  256 IKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            9999999987655555543222     3345788999999999999999999999875

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-43  Score=245.92  Aligned_cols=244  Identities=21%  Similarity=0.356  Sum_probs=211.6

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC-----CccccceecccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-----NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES   77 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~   77 (294)
                      +++.|.+.|..++..  +.+...+++++.|..+.+|++.     .|.+++.+++|...|..+..++ ++++.++++.|++
T Consensus        10 tl~gh~d~Vt~la~~--~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~   86 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIK--IKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGT   86 (315)
T ss_pred             eecCCCceEEEEEee--cCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccce
Confidence            678999999999998  4444489999999999999985     3677899999999999999999 9999999999999


Q ss_pred             EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      +++||+.+++..+.|.   +|...|.+++|+| ++..+++|+.|.+|++|++...                       ..
T Consensus        87 lrlWDl~~g~~t~~f~---GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-----------------------ck  139 (315)
T KOG0279|consen   87 LRLWDLATGESTRRFV---GHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-----------------------CK  139 (315)
T ss_pred             EEEEEecCCcEEEEEE---ecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-----------------------EE
Confidence            9999999999999999   7999999999999 8889999999999999999872                       22


Q ss_pred             eEEeec-CCCceeeccee----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          158 VFIASV-HSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       158 ~~~~~~-~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      ...... +.+.|.|+.|+    ..+|++++.|+++++||+++.+         ....+.+|...++.+++||||  ...+
T Consensus       140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~---------l~~~~~gh~~~v~t~~vSpDG--slca  208 (315)
T KOG0279|consen  140 YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ---------LRTTFIGHSGYVNTVTVSPDG--SLCA  208 (315)
T ss_pred             EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc---------hhhccccccccEEEEEECCCC--CEEe
Confidence            222222 38899999997    3489999999999999999665         567788899999999999999  5899


Q ss_pred             EEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          233 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +|+.||.+.+||++.++.  ...+   .+...|.+++|+|+...|+.+. +..|+|||+++
T Consensus       209 sGgkdg~~~LwdL~~~k~--lysl---~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~  263 (315)
T KOG0279|consen  209 SGGKDGEAMLWDLNEGKN--LYSL---EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLES  263 (315)
T ss_pred             cCCCCceEEEEEccCCce--eEec---cCCCeEeeEEecCCceeEeecc-CCceEEEeccc
Confidence            999999999999999874  3333   5668899999999987776664 44599999875

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.8e-43  Score=244.83  Aligned_cols=247  Identities=17%  Similarity=0.257  Sum_probs=219.3

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .|+.|.+.|+++.|+  +|.+ ++++++.||.+.|||.-+....+.++.....|..++|+| +++++|.|+-|+...||+
T Consensus        50 ~LkGH~~Ki~~~~ws--~Dsr-~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWS--TDSR-RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EecccccceeeeEec--CCcC-eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEe
Confidence            478999999999998  8998 999999999999999999988888988899999999999 999999999999999999


Q ss_pred             cCCC--c-eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           83 VQTG--I-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        83 ~~~~--~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      +.+.  + .+..-+.+.+|.+.+.|+.|-+ + ..|+|++.|.++.+||+++                       .....
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D-~~ilT~SGD~TCalWDie~-----------------------g~~~~  180 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLD-D-NHILTGSGDMTCALWDIET-----------------------GQQTQ  180 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcC-C-CceEecCCCceEEEEEccc-----------------------ceEEE
Confidence            9855  1 1122222338999999999986 5 4599999999999999999                       55678


Q ss_pred             EeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          160 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      .+.+|.+.|.++++.   ++.+++|+.|+..++||+|.+.         ..+.+.+|+..|++++|.|+|  .-+++|++
T Consensus       181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~---------c~qtF~ghesDINsv~ffP~G--~afatGSD  249 (343)
T KOG0286|consen  181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ---------CVQTFEGHESDINSVRFFPSG--DAFATGSD  249 (343)
T ss_pred             EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc---------eeEeecccccccceEEEccCC--CeeeecCC
Confidence            889999999999885   7899999999999999999765         789999999999999999999  58999999


Q ss_pred             CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      |++.++||++..+.+....  +.....+|++++||..|++|++|..|..+.+||.
T Consensus       250 D~tcRlyDlRaD~~~a~ys--~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  250 DATCRLYDLRADQELAVYS--HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             CceeEEEeecCCcEEeeec--cCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence            9999999999987544444  4466789999999999999999999999999996

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.4e-44  Score=281.08  Aligned_cols=240  Identities=25%  Similarity=0.458  Sum_probs=217.4

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-------------------------------ccceecccCcce
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-------------------------------LHKSFVGHGDSI   56 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------------------------------~~~~~~~h~~~v   56 (294)
                      ...++|..|+  +++. +||.|..|..|++|.+...+                               ..+++.+|.++|
T Consensus       378 ~~~v~ca~fS--ddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV  454 (707)
T KOG0263|consen  378 YQGVTCAEFS--DDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV  454 (707)
T ss_pred             CCcceeEeec--CCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence            4578888887  8888 99999999999999886311                               123567899999


Q ss_pred             EEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccc
Q 022590           57 NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV  136 (294)
Q Consensus        57 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~  136 (294)
                      ..+.|+| +.++|++++.|+++|+|.+.+..++..++   +|..||+++.|+| .+.+|||++.|++-++|....     
T Consensus       455 yg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~---GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~-----  524 (707)
T KOG0263|consen  455 YGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYK---GHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDH-----  524 (707)
T ss_pred             eeeeecc-cccceeeccCCcceeeeecccceeEEEec---CCCcceeeEEecC-CceEEEecCCCceeeeeeccc-----
Confidence            9999999 89999999999999999999999999888   7999999999999 899999999999999999998     


Q ss_pred             ccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC
Q 022590          137 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE  214 (294)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  214 (294)
                                        ..|...+.+|.+.|.|+.|+  .+++++|+.|.++|+||+.++.         .++.+.+|.
T Consensus       525 ------------------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~---------~VRiF~GH~  577 (707)
T KOG0263|consen  525 ------------------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN---------SVRIFTGHK  577 (707)
T ss_pred             ------------------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc---------EEEEecCCC
Confidence                              67888999999999999997  7899999999999999999876         688889999


Q ss_pred             CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          215 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       215 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+|.+++|||+|  .+|++|+.||.|.+||+.+++.  ...+.  +|.+.|.++.|+.+|..||+|+.|..|++||+..
T Consensus       578 ~~V~al~~Sp~G--r~LaSg~ed~~I~iWDl~~~~~--v~~l~--~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  578 GPVTALAFSPCG--RYLASGDEDGLIKIWDLANGSL--VKQLK--GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CceEEEEEcCCC--ceEeecccCCcEEEEEcCCCcc--hhhhh--cccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            999999999999  7999999999999999999863  33443  7789999999999999999999999999999853

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=3.5e-42  Score=254.35  Aligned_cols=240  Identities=22%  Similarity=0.380  Sum_probs=216.6

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ...|++++|+  .+|. +||+|+.||.+++|+. +|.++.++..|.++|.++.|+. .+.+|++++.|+++.+||..++.
T Consensus       235 nkdVT~L~Wn--~~G~-~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk-~G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  235 NKDVTSLDWN--NDGT-LLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNK-KGTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             cCCcceEEec--CCCC-eEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcC-CCCEEEeccCCccEEEEeccCce
Confidence            4689999998  8898 9999999999999995 6788899999999999999999 99999999999999999999999


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      ....+.   -|..+-..+.|-  +...|++++.|+.|+|+.+..                       ..|+..+.+|.+.
T Consensus       310 ~~q~f~---~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~-----------------------~~P~~t~~GH~g~  361 (524)
T KOG0273|consen  310 VKQQFE---FHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGE-----------------------DRPVKTFIGHHGE  361 (524)
T ss_pred             EEEeee---eccCCccceEEe--cCceEeecCCCceEEEEEecC-----------------------CCcceeeecccCc
Confidence            998888   488887889997  556699999999999999998                       7788899999999


Q ss_pred             eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC-------cceEEEEcCCC
Q 022590          168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-------YNAAAIGNREG  238 (294)
Q Consensus       168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~l~~~~~dg  238 (294)
                      |.++.|+  +.+|++++.|++++||......         ....+..|...|+.+.|+|.+.       +..+++++.|+
T Consensus       362 V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~---------~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds  432 (524)
T KOG0273|consen  362 VNALKWNPTGSLLASCSDDGTLKIWSMGQSN---------SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS  432 (524)
T ss_pred             eEEEEECCCCceEEEecCCCeeEeeecCCCc---------chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence            9999998  8999999999999999987544         5677788889999999999874       36799999999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +|++||+..+.+  ...+.  .|..+|.+++|+|+|+|+|+|+.||.|.+|++++
T Consensus       433 tV~lwdv~~gv~--i~~f~--kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  433 TVKLWDVESGVP--IHTLM--KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             eEEEEEccCCce--eEeec--cCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence            999999999874  44443  8889999999999999999999999999999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.1e-41  Score=236.18  Aligned_cols=238  Identities=21%  Similarity=0.357  Sum_probs=208.7

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc------cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      ..|-.++|+  |.|+ ++|+|+.|+...||++.+.      +..+.+.+|++-+.|+.|-+  ...|++++.|.+..+||
T Consensus        98 ~WVMtCA~s--PSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWD  172 (343)
T KOG0286|consen   98 SWVMTCAYS--PSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWD  172 (343)
T ss_pred             eeEEEEEEC--CCCC-eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEE
Confidence            345555555  9998 9999999999999999855      45567899999999999987  45789999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +++++.+..|.   +|.+.|.+|.++|.+++.+++|+.|+..++||+|.                       ...+..+.
T Consensus       173 ie~g~~~~~f~---GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-----------------------~~c~qtF~  226 (343)
T KOG0286|consen  173 IETGQQTQVFH---GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-----------------------GQCVQTFE  226 (343)
T ss_pred             cccceEEEEec---CCcccEEEEecCCCCCCeEEecccccceeeeeccC-----------------------cceeEeec
Confidence            99999999999   79999999999998899999999999999999999                       66788999


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      +|+..|+++.|.  |.-|++|+.|++.++||+|..++.       .+........+|++++||..|  ++|++|..|..+
T Consensus       227 ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~-------a~ys~~~~~~gitSv~FS~SG--RlLfagy~d~~c  297 (343)
T KOG0286|consen  227 GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQEL-------AVYSHDSIICGITSVAFSKSG--RLLFAGYDDFTC  297 (343)
T ss_pred             ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEE-------eeeccCcccCCceeEEEcccc--cEEEeeecCCce
Confidence            999999999996  889999999999999999976531       122233345789999999999  699999999999


Q ss_pred             EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      .+||.-.++  ....+.  +|.+.|+++..+|||.-|+||+.|..++||.
T Consensus       298 ~vWDtlk~e--~vg~L~--GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  298 NVWDTLKGE--RVGVLA--GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             eEeeccccc--eEEEee--ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            999998876  334444  9999999999999999999999999999994

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3e-43  Score=255.66  Aligned_cols=244  Identities=20%  Similarity=0.334  Sum_probs=215.9

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc-CcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      +..|+.+|.++.|+  ++|. ++++|+.+|.|++|+..- ..++.+++| ...|++++|+| +...+++++.||+|+|||
T Consensus       134 lQaHDs~Vr~m~ws--~~g~-wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWd  208 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWS--HNGT-WMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWD  208 (464)
T ss_pred             hhhhcccceeEEEc--cCCC-EEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEe
Confidence            45899999999998  8898 999999999999999754 444555555 48999999999 778899999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      ....+....+.   +|.-.|.+++|+| ...++++++.|..|++||.++                       ...+..+.
T Consensus       209 f~~~kee~vL~---GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprS-----------------------g~cl~tlh  261 (464)
T KOG0284|consen  209 FRMPKEERVLR---GHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRS-----------------------GSCLATLH  261 (464)
T ss_pred             ccCCchhheec---cCCCCcceeccCC-ccceeEEccCCceeEeecCCC-----------------------cchhhhhh
Confidence            99888877777   7999999999999 778899999999999999999                       56678889


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      .|...|..+.|+  +++|++++.|..++++|+++.+         .++.+..|...++++.|+|-.. .+|.+|+.||.|
T Consensus       262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mk---------El~~~r~Hkkdv~~~~WhP~~~-~lftsgg~Dgsv  331 (464)
T KOG0284|consen  262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMK---------ELFTYRGHKKDVTSLTWHPLNE-SLFTSGGSDGSV  331 (464)
T ss_pred             hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhH---------HHHHhhcchhhheeeccccccc-cceeeccCCCce
Confidence            999999999997  8999999999999999999544         5778888999999999999887 699999999999


Q ss_pred             EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ..|.+...+++.....   +|...|.+++|+|-|..|++|+.|.++++|.-.
T Consensus       332 vh~~v~~~~p~~~i~~---AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  332 VHWVVGLEEPLGEIPP---AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             EEEeccccccccCCCc---ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            9999986654433332   778999999999999999999999999999753

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9e-42  Score=231.29  Aligned_cols=245  Identities=20%  Similarity=0.311  Sum_probs=215.9

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .++.++++|.++.|+  -+|+ |.++++.|.+|++|+...+.+++++.+|..+|..++.+. ++..+++|+.|..+.+||
T Consensus        12 ~l~~~qgaV~avryN--~dGn-Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYN--VDGN-YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             eecccccceEEEEEc--cCCC-EEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEE
Confidence            467899999999998  8998 999999999999999999999999999999999999999 888999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.+|+..+.+.   +|.+.|+.++|+. +...+++|+.|.++++||.+...                     ..|++.+.
T Consensus        88 V~TGkv~Rr~r---gH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s---------------------~ePiQild  142 (307)
T KOG0316|consen   88 VNTGKVDRRFR---GHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRS---------------------FEPIQILD  142 (307)
T ss_pred             cccCeeeeecc---cccceeeEEEecC-cceEEEeccccceeEEEEcccCC---------------------CCccchhh
Confidence            99999999999   7999999999998 88999999999999999999843                     45677788


Q ss_pred             cCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          163 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       163 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      ...+.|.++...+..+++|+.||+++.||++.+..         ..  ..-..+|++++|++++  +..++++.|+.+++
T Consensus       143 ea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l---------~s--Dy~g~pit~vs~s~d~--nc~La~~l~stlrL  209 (307)
T KOG0316|consen  143 EAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTL---------SS--DYFGHPITSVSFSKDG--NCSLASSLDSTLRL  209 (307)
T ss_pred             hhcCceeEEEecccEEEeeccCCcEEEEEeeccee---------eh--hhcCCcceeEEecCCC--CEEEEeeccceeee
Confidence            88899999999999999999999999999998753         21  2235689999999999  68999999999999


Q ss_pred             EeccCCCceeeeeccccccC--CCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          243 WELQSSPPVLIARLSHAQSK--SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|-.+++.  .....  +|.  ..=...+++.....+++|++||.|++||+..
T Consensus       210 lDk~tGkl--L~sYk--Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  210 LDKETGKL--LKSYK--GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             cccchhHH--HHHhc--ccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence            99999873  33333  443  3345677788888999999999999999864

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.6e-41  Score=229.12  Aligned_cols=248  Identities=16%  Similarity=0.271  Sum_probs=205.8

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      ..+..|+.+...  |+++ .||+++.- .||+||+.+++  ++.++.+|++.|+++.|.. +++.+++|+.||+++|||+
T Consensus        38 h~dsqVNrLeiT--pdk~-~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdl  112 (311)
T KOG0315|consen   38 HPDSQVNRLEIT--PDKK-DLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDL  112 (311)
T ss_pred             cCccceeeEEEc--CCcc-hhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEec
Confidence            345789999997  8998 78887754 79999998765  5889999999999999999 9999999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      +...+.+.++    |..+|+++..+| +...|++|..+|.|++||+.......                      .....
T Consensus       113 R~~~~qR~~~----~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~----------------------~liPe  165 (311)
T KOG0315|consen  113 RSLSCQRNYQ----HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTH----------------------ELIPE  165 (311)
T ss_pred             cCcccchhcc----CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCcccc----------------------ccCCC
Confidence            9988877776    889999999999 77779999999999999999832111                      11111


Q ss_pred             CCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          164 HSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       164 ~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      ...+|.++..  +|.+++.+...|..++|++-....   .....++.+++.|...+..+.+||++  .+|++++.|.+++
T Consensus       166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~---~s~l~P~~k~~ah~~~il~C~lSPd~--k~lat~ssdktv~  240 (311)
T KOG0315|consen  166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT---ASELEPVHKFQAHNGHILRCLLSPDV--KYLATCSSDKTVK  240 (311)
T ss_pred             CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc---cccceEhhheecccceEEEEEECCCC--cEEEeecCCceEE
Confidence            2234444433  499999999999999999987432   22455677889999999999999999  5999999999999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ||+.++. ......+.  +|...+..++||.||+||+||+.|+.+++|+++.
T Consensus       241 iwn~~~~-~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  241 IWNTDDF-FKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA  289 (311)
T ss_pred             EEecCCc-eeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeeccccc
Confidence            9999887 33344444  8889999999999999999999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=7.3e-42  Score=244.92  Aligned_cols=242  Identities=19%  Similarity=0.377  Sum_probs=219.2

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|.+.|.|+++.  |.++ ++++|+.|++|+|||+.++++..++.+|-..|..+++++ -..++++++.|+.|+.||+
T Consensus       147 i~gHlgWVr~vavd--P~n~-wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVD--PGNE-WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhccceEEEEeeC--CCce-eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEec
Confidence            56899999999997  7776 999999999999999999999999999999999999999 7789999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      +..+.++.+.   +|-+.|.|++.+| .-..|++|+.|.++++||+++                       +.++..+.+
T Consensus       223 e~nkvIR~Yh---GHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRt-----------------------r~~V~~l~G  275 (460)
T KOG0285|consen  223 EYNKVIRHYH---GHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRT-----------------------RASVHVLSG  275 (460)
T ss_pred             hhhhhHHHhc---cccceeEEEeccc-cceeEEecCCcceEEEeeecc-----------------------cceEEEecC
Confidence            9999998888   7999999999999 778899999999999999999                       778999999


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      |..+|..+.+.  ...+++|+.|++|++||++.++         ....+..|...+.+++.+|..  ..+++++.|. |+
T Consensus       276 H~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk---------t~~tlt~hkksvral~lhP~e--~~fASas~dn-ik  343 (460)
T KOG0285|consen  276 HTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK---------TMITLTHHKKSVRALCLHPKE--NLFASASPDN-IK  343 (460)
T ss_pred             CCCcceeEEeecCCCceEEecCCceEEEeeeccCc---------eeEeeecccceeeEEecCCch--hhhhccCCcc-ce
Confidence            99999999997  7899999999999999999876         566777888899999999997  5778777765 99


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      -|++..+.  ....+.  +|...|++++...|+ ++++|+++|.+.+||.++
T Consensus       344 ~w~~p~g~--f~~nls--gh~~iintl~~nsD~-v~~~G~dng~~~fwdwks  390 (460)
T KOG0285|consen  344 QWKLPEGE--FLQNLS--GHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKS  390 (460)
T ss_pred             eccCCccc--hhhccc--cccceeeeeeeccCc-eEEEcCCceEEEEEecCc
Confidence            99998886  333344  888999999998886 889999999999999875

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-41  Score=230.54  Aligned_cols=246  Identities=18%  Similarity=0.343  Sum_probs=214.0

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      +-++.++.++|+.+.+  +.+++++.||+++|||+.. .++++.++.|..+|.++.|++...+.+++++.|++|++|+..
T Consensus        58 d~~D~LfdV~Wse~~e--~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~  135 (311)
T KOG0277|consen   58 DTEDGLFDVAWSENHE--NQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN  135 (311)
T ss_pred             ecccceeEeeecCCCc--ceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC
Confidence            3467899999995444  4799999999999999643 468889999999999999999888899999999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      .++.+.++.   +|...|...+|+|..++++++++.|+++++||++..                       .....+..|
T Consensus       136 r~~Sv~Tf~---gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-----------------------gk~~~i~ah  189 (311)
T KOG0277|consen  136 RPNSVQTFN---GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-----------------------GKFMSIEAH  189 (311)
T ss_pred             CCcceEeec---CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-----------------------CceeEEEec
Confidence            999999988   799999999999999999999999999999999982                       233448889


Q ss_pred             CCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          165 SNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       165 ~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      ...|.++.|+   .+.+++|+.|+.|+.||+++.+.        ++.++.+|.-.|..++|||... .+|++++.|-+++
T Consensus       190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--------pl~eL~gh~~AVRkvk~Sph~~-~lLaSasYDmT~r  260 (311)
T KOG0277|consen  190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--------PLFELNGHGLAVRKVKFSPHHA-SLLASASYDMTVR  260 (311)
T ss_pred             cceeEeecccccCCcEEEecCCCceEEEEehhhccc--------cceeecCCceEEEEEecCcchh-hHhhhccccceEE
Confidence            9999999997   78999999999999999998664        5778889999999999999876 7999999999999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEEeccCCcEEEEec
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vw~~  291 (294)
                      |||...+.. ...+..  .|..-+..+.|++ ++.++|+++.|+.++||+-
T Consensus       261 iw~~~~~ds-~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  261 IWDPERQDS-AIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ecccccchh-hhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence            999986542 222333  6778899999998 5679999999999999983

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=100.00  E-value=2.2e-40  Score=234.66  Aligned_cols=290  Identities=51%  Similarity=0.970  Sum_probs=250.5

Q ss_pred             ccc-ccCceeEEEEEeecCC-CceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            3 YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         3 ~~~-~h~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      |.+ +|++..+.++|++... +++++|+|+.-|.|+|.|+.+++....+.+|..+|+.|.++|...+++++++.|.+||+
T Consensus        83 y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRl  162 (385)
T KOG1034|consen   83 YADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRL  162 (385)
T ss_pred             ccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence            455 6999999999998765 67899999999999999999999999999999999999999988899999999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecc--ccccccccceeecCCCCC--CCCceeee
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPSK--FPTKYVQF  156 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~  156 (294)
                      |++++..++..|-...+|.+.|.++.|++ ++.+|++++.|.+|++|++.  ......+..+++......  ++......
T Consensus       163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f  241 (385)
T KOG1034|consen  163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF  241 (385)
T ss_pred             EeccCCeEEEEecccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence            99999999999999999999999999999 88899999999999999999  566666666666655444  33444444


Q ss_pred             ceE-EeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCC-----CCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590          157 PVF-IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYNA  230 (294)
Q Consensus       157 ~~~-~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  230 (294)
                      |.. ....|..+|.|+.|-|+++++-+.++.|..|.+-..+..     +.......+.+++.+.+.++.+.|+-+....+
T Consensus       242 p~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~  321 (385)
T KOG1034|consen  242 PDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKM  321 (385)
T ss_pred             ccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHH
Confidence            544 667899999999999999999999999999998433222     44445667888899999999999988877789


Q ss_pred             EEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       231 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ||.|...|.|++||++..++....++.+......|+..+|+.||.+|+..++|+.|.-||..+
T Consensus       322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence            999999999999999998876666666666778899999999999999999999999998653

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.6e-41  Score=239.82  Aligned_cols=246  Identities=27%  Similarity=0.394  Sum_probs=217.8

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +.+|..+|+.+-|.  |+-. ++++++.|++|++||..+++....+++|.+.|.+++|+. .+.+|++++.|=.+++||.
T Consensus       104 l~g~r~~vt~v~~h--p~~~-~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFH--PSEA-LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             hhccccceeeeeec--cCce-EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEec-CccEEEecCCccchhheeH
Confidence            45788999999985  7776 899999999999999999999999999999999999999 8999999999999999999


Q ss_pred             CC-CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           84 QT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        84 ~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      .+ .++++...   +|...|.+++|-| .+.++++++.|.+|+.|++.+                       ...+..+.
T Consensus       180 ~~~~~c~ks~~---gh~h~vS~V~f~P-~gd~ilS~srD~tik~We~~t-----------------------g~cv~t~~  232 (406)
T KOG0295|consen  180 DTFFRCIKSLI---GHEHGVSSVFFLP-LGDHILSCSRDNTIKAWECDT-----------------------GYCVKTFP  232 (406)
T ss_pred             HHHHHHHHHhc---CcccceeeEEEEe-cCCeeeecccccceeEEeccc-----------------------ceeEEecc
Confidence            76 44555555   7999999999999 789999999999999999999                       67788999


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC-------------
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-------------  227 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------  227 (294)
                      +|+..|..+..+  |.++++++.|.++++|-+.+.+         +...+..|+.++.+++|.|...             
T Consensus       233 ~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~---------~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~  303 (406)
T KOG0295|consen  233 GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQ---------CKAELREHEHPVECIAWAPESSYPSISEATGSTNG  303 (406)
T ss_pred             CchHhEEEEEecCCeeEEEecCCCceEEEEEeccch---------hhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence            999999999986  8899999999999999998765         4556677788888888887532             


Q ss_pred             cceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          228 YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       228 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +.++.+++.|++|++||+.++.  ....+.  +|.+.|..++|+|.|+||+++.+|+++++||++.
T Consensus       304 ~~~l~s~SrDktIk~wdv~tg~--cL~tL~--ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  304 GQVLGSGSRDKTIKIWDVSTGM--CLFTLV--GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN  365 (406)
T ss_pred             ccEEEeecccceEEEEeccCCe--EEEEEe--cccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence            2589999999999999999986  444555  8999999999999999999999999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.6e-42  Score=245.47  Aligned_cols=235  Identities=22%  Similarity=0.367  Sum_probs=204.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      +....|+|+.+   .|+  .+++|..|++|+|||..+..+.+.+.+|++.|.|+.|..   +.+++|+.|.+|++||+++
T Consensus       195 e~skgVYClQY---DD~--kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  195 ENSKGVYCLQY---DDE--KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             ccCCceEEEEe---cch--hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC
Confidence            45678999998   455  599999999999999999999999999999999999964   6999999999999999999


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ++++..+-   .|...|..+.|+.   .++++++.|.++.+||+.....                    ......+.+|.
T Consensus       267 ge~l~tli---hHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~--------------------it~rrVLvGHr  320 (499)
T KOG0281|consen  267 GEPLNTLI---HHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD--------------------ITLRRVLVGHR  320 (499)
T ss_pred             CchhhHHh---hhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH--------------------HHHHHHHhhhh
Confidence            99999887   6999999999963   5799999999999999987321                    12234578899


Q ss_pred             CceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          166 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       166 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      ..|+.+.|+..++++++.|.+|++|++.+.+         .++.+.+|...|.++.+.  +  .++++|+.|.+|++||+
T Consensus       321 AaVNvVdfd~kyIVsASgDRTikvW~~st~e---------fvRtl~gHkRGIAClQYr--~--rlvVSGSSDntIRlwdi  387 (499)
T KOG0281|consen  321 AAVNVVDFDDKYIVSASGDRTIKVWSTSTCE---------FVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDI  387 (499)
T ss_pred             hheeeeccccceEEEecCCceEEEEecccee---------eehhhhcccccceehhcc--C--eEEEecCCCceEEEEec
Confidence            9999999999999999999999999999776         688888898888776553  3  68999999999999999


Q ss_pred             cCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          246 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ..+.  ....++  +|..-|.++.|  |.+.+++|+.||+|+|||+..
T Consensus       388 ~~G~--cLRvLe--GHEeLvRciRF--d~krIVSGaYDGkikvWdl~a  429 (499)
T KOG0281|consen  388 ECGA--CLRVLE--GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQA  429 (499)
T ss_pred             cccH--HHHHHh--chHHhhhheee--cCceeeeccccceEEEEeccc
Confidence            9997  344444  88899999999  456899999999999999864

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.1e-40  Score=260.74  Aligned_cols=203  Identities=24%  Similarity=0.408  Sum_probs=190.3

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +-.|.++|+...|+  |+.+ +|++++.|++||+|.+.+...+-.+++|..||.++.|+| .|.++|||+.|++.++|..
T Consensus       447 L~GH~GPVyg~sFs--Pd~r-fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFS--PDRR-FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWST  522 (707)
T ss_pred             eecCCCceeeeeec--cccc-ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeec
Confidence            34899999999998  9998 999999999999999999999999999999999999999 8999999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      ...++++.+.   +|-+.|.|+.|+| +.+++++|+.|.++++||+.+                       ...+..+.+
T Consensus       523 d~~~PlRifa---ghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~-----------------------G~~VRiF~G  575 (707)
T KOG0263|consen  523 DHNKPLRIFA---GHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVST-----------------------GNSVRIFTG  575 (707)
T ss_pred             ccCCchhhhc---ccccccceEEECC-cccccccCCCCceEEEEEcCC-----------------------CcEEEEecC
Confidence            9999988888   7999999999999 999999999999999999999                       456888899


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      |.++|.+++|+  |.+|++|+.||.|.+||+.+++         .+..+..|.+.++++.|+.++  ..|++|+.|+.|+
T Consensus       576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~---------~v~~l~~Ht~ti~SlsFS~dg--~vLasgg~DnsV~  644 (707)
T KOG0263|consen  576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS---------LVKQLKGHTGTIYSLSFSRDG--NVLASGGADNSVR  644 (707)
T ss_pred             CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc---------chhhhhcccCceeEEEEecCC--CEEEecCCCCeEE
Confidence            99999999997  9999999999999999999876         567777889999999999999  6999999999999


Q ss_pred             EEeccCC
Q 022590          242 VWELQSS  248 (294)
Q Consensus       242 i~d~~~~  248 (294)
                      +||+...
T Consensus       645 lWD~~~~  651 (707)
T KOG0263|consen  645 LWDLTKV  651 (707)
T ss_pred             EEEchhh
Confidence            9998754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=7.1e-41  Score=248.17  Aligned_cols=251  Identities=20%  Similarity=0.388  Sum_probs=210.1

Q ss_pred             cccccCceeEEEEEeecC-CCceEEEEeecCCeEEEEEcCC-ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            3 YVDQKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      .+.+|...|+++.|.  | .+. +|++++.|+.|+||++-. +++++++.+|..+|.+++|++ ++..+.+++.|+.|++
T Consensus       209 ~~~gH~kgvsai~~f--p~~~h-LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWF--PKKGH-LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKL  284 (503)
T ss_pred             eccCCccccchhhhc--cceee-EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeee
Confidence            456899999999998  6 565 999999999999999976 889999999999999999999 9999999999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ||+++|+++..+.    ....++|+.|+|++.+.|++|+.|+.|+.||+|.                       ...+..
T Consensus       285 wDtETG~~~~~f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-----------------------~kvvqe  337 (503)
T KOG0282|consen  285 WDTETGQVLSRFH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-----------------------GKVVQE  337 (503)
T ss_pred             eccccceEEEEEe----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-----------------------hHHHHH
Confidence            9999999999997    6678999999996669999999999999999999                       445666


Q ss_pred             eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCC-----------------------Ccee---------
Q 022590          161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG-----------------------TADI---------  206 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------------------~~~~---------  206 (294)
                      ...|-+.|..+.|-  +.++++.+.|+.+++|+.+.+.......                       ....         
T Consensus       338 Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~  417 (503)
T KOG0282|consen  338 YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPP  417 (503)
T ss_pred             HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccc
Confidence            77788999999995  8899999999999999998764321100                       0000         


Q ss_pred             -----eeeeecCC--CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEE
Q 022590          207 -----LQKYPVPE--CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STIL  278 (294)
Q Consensus       207 -----~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~  278 (294)
                           ...+.+|.  +--..+.|||||  .+|++|+.||.+.+||.++.+  ....++  .|.+++..+.|+|.. ..+|
T Consensus       418 ~r~nkkK~feGh~vaGys~~v~fSpDG--~~l~SGdsdG~v~~wdwkt~k--l~~~lk--ah~~~ci~v~wHP~e~Skva  491 (503)
T KOG0282|consen  418 FRLNKKKRFEGHSVAGYSCQVDFSPDG--RTLCSGDSDGKVNFWDWKTTK--LVSKLK--AHDQPCIGVDWHPVEPSKVA  491 (503)
T ss_pred             cccCHhhhhcceeccCceeeEEEcCCC--CeEEeecCCccEEEeechhhh--hhhccc--cCCcceEEEEecCCCcceeE
Confidence                 01112222  234568899999  699999999999999999876  444555  778999999999964 6899


Q ss_pred             EeccCCcEEEEe
Q 022590          279 SCCEDGAIWRWD  290 (294)
Q Consensus       279 s~~~dg~i~vw~  290 (294)
                      +++.||.|++|+
T Consensus       492 t~~w~G~Ikiwd  503 (503)
T KOG0282|consen  492 TCGWDGLIKIWD  503 (503)
T ss_pred             ecccCceeEecC
Confidence            999999999996

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-38  Score=220.22  Aligned_cols=246  Identities=17%  Similarity=0.255  Sum_probs=204.2

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc--cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      +.|+..|.+++|+  |.|+ +||+|+.|.++.||.-..+  +++.++.+|...|.|++|++ ++++||+++.|..|-||.
T Consensus        58 ~~hkrsVRsvAws--p~g~-~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   58 DGHKRSVRSVAWS--PHGR-YLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWE  133 (312)
T ss_pred             ccchheeeeeeec--CCCc-EEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEE
Confidence            3799999999998  9999 9999999999999986544  67889999999999999999 999999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +..+........+.+|...|..+.|+| ...+|++++.|++|++|+-....                    .-.....+.
T Consensus       134 ~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dd--------------------dW~c~~tl~  192 (312)
T KOG0645|consen  134 IDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDD--------------------DWECVQTLD  192 (312)
T ss_pred             ecCCCcEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCC--------------------CeeEEEEec
Confidence            987665555444558999999999999 88899999999999999877311                    034577889


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      +|...|.+++|+  |+.|++++.|++++||-....-             -..+...++.+.|. ++   .|++++.|+.|
T Consensus       193 g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~-------------~~~~sr~~Y~v~W~-~~---~IaS~ggD~~i  255 (312)
T KOG0645|consen  193 GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL-------------SGMHSRALYDVPWD-NG---VIASGGGDDAI  255 (312)
T ss_pred             CccceEEEEEecCCCceEEEecCCcceEeeeeccCc-------------chhcccceEeeeec-cc---ceEeccCCCEE
Confidence            999999999997  8899999999999999865321             12245668888888 44   79999999999


Q ss_pred             EEEeccCC--Cceeeeec-cccccCCCeEEEEEccC-CCEEEEeccCCcEEEEecC
Q 022590          241 FVWELQSS--PPVLIARL-SHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       241 ~i~d~~~~--~~~~~~~~-~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++|.-...  ++...... ....|...|++++|.|. ..+|++|+.||.|++|.+.
T Consensus       256 ~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  256 RLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             EEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            99987653  11111111 24477889999999994 6899999999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=8.8e-41  Score=242.89  Aligned_cols=241  Identities=18%  Similarity=0.313  Sum_probs=208.8

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .-+-+|+.+.|.  |+|+ .|++|+..|.+.+|+..+-.....++.|..+|+++.|++ ++..+++|+.+|.|++|+...
T Consensus        94 Kvkc~V~~v~Wt--PeGR-RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnm  169 (464)
T KOG0284|consen   94 KVKCPVNVVRWT--PEGR-RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNM  169 (464)
T ss_pred             ccccceeeEEEc--CCCc-eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccch
Confidence            445689999998  9999 999999999999999866666667789999999999999 999999999999999999854


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      .. ++.++.  .|...|++++|+| +...|++++.||+|+|||...                       ..+...+.+|.
T Consensus       170 nn-Vk~~~a--hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~-----------------------~kee~vL~GHg  222 (464)
T KOG0284|consen  170 NN-VKIIQA--HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRM-----------------------PKEERVLRGHG  222 (464)
T ss_pred             hh-hHHhhH--hhhhhhheeccCC-CCceeEEecCCCeEEEEeccC-----------------------CchhheeccCC
Confidence            43 344442  3558999999999 777799999999999999998                       44455678999


Q ss_pred             Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590          166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~  243 (294)
                      -.|.+++|+  ..++++++.|..|++||.+++.         ++..+..|...|..+.|+|++  ++|++++.|..++++
T Consensus       223 wdVksvdWHP~kgLiasgskDnlVKlWDprSg~---------cl~tlh~HKntVl~~~f~~n~--N~Llt~skD~~~kv~  291 (464)
T KOG0284|consen  223 WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS---------CLATLHGHKNTVLAVKFNPNG--NWLLTGSKDQSCKVF  291 (464)
T ss_pred             CCcceeccCCccceeEEccCCceeEeecCCCcc---------hhhhhhhccceEEEEEEcCCC--CeeEEccCCceEEEE
Confidence            999999998  6689999999999999999887         677888899999999999999  799999999999999


Q ss_pred             eccCCCceeeeeccccccCCCeEEEEEccC-CCEEEEeccCCcEEEEecC
Q 022590          244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~vw~~~  292 (294)
                      |+++.+.  +..+.  +|+..|++++|+|- ..+|.+|+.||.|..|.+-
T Consensus       292 DiR~mkE--l~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  292 DIRTMKE--LFTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             ehhHhHH--HHHhh--cchhhheeeccccccccceeeccCCCceEEEecc
Confidence            9996543  33333  88899999999994 5688899999999999875

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.4e-39  Score=224.53  Aligned_cols=248  Identities=19%  Similarity=0.298  Sum_probs=208.6

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC-CccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      +..|++.|+.+.|.  |+|. +||+|+.|..|.+|++. ..+-...+++|.++|..+.|.+ +++.+++++.|.+++.||
T Consensus        43 l~gh~geI~~~~F~--P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFH--PDGS-CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             cCCCcceEEEEEEC--CCCC-eEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEe
Confidence            34899999999998  8998 99999999999999954 4455667889999999999999 999999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +++|+.++.++   +|..-|+.+.-+..+..++.+++.|+++++||+|+.                       .++.. .
T Consensus       119 ~~tG~~~rk~k---~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k-----------------------~~~~t-~  171 (338)
T KOG0265|consen  119 AETGKRIRKHK---GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK-----------------------EAIKT-F  171 (338)
T ss_pred             cccceeeehhc---cccceeeecCccccCCeEEEecCCCceEEEEeeccc-----------------------chhhc-c
Confidence            99999999998   799999999966556678889999999999999972                       22222 2


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      ...-.++++.|.  ++.+++|+-|+.|++||++...         ....+.+|..+|+.+..++++  .++.+-+.|..+
T Consensus       172 ~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d---------~~~~lsGh~DtIt~lsls~~g--s~llsnsMd~tv  240 (338)
T KOG0265|consen  172 ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND---------GLYTLSGHADTITGLSLSRYG--SFLLSNSMDNTV  240 (338)
T ss_pred             ccceeEEEEEecccccceeeccccCceeeeccccCc---------ceEEeecccCceeeEEeccCC--CccccccccceE
Confidence            235567888886  8899999999999999999665         688899999999999999999  589999999999


Q ss_pred             EEEeccCCCc--eeeeeccccccC--CCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          241 FVWELQSSPP--VLIARLSHAQSK--SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       241 ~i~d~~~~~~--~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++||++...+  ..+..+....|.  .....++|+|++..+.+|+.|..+++||...
T Consensus       241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~  297 (338)
T KOG0265|consen  241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS  297 (338)
T ss_pred             EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence            9999986543  223333322232  3456789999999999999999999999753

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-39  Score=246.27  Aligned_cols=246  Identities=17%  Similarity=0.258  Sum_probs=225.6

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      ..+.++|.++.+.  |... .++++-.+|.|.|||.++..+++.+.-..-||++..|-+ ..+.+++|+.|..|+||+..
T Consensus        10 ~~rSdRVKsVd~H--PteP-w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnyn   85 (794)
T KOG0276|consen   10 QSRSDRVKSVDFH--PTEP-WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYN   85 (794)
T ss_pred             hccCCceeeeecC--CCCc-eEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecc
Confidence            3688999999996  8776 999999999999999999999999999999999999999 88999999999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      +++.+..|.   .|.+.|.+++.+| ...++++++.|-+|++||....                      ......+.+|
T Consensus        86 t~ekV~~Fe---AH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~----------------------wa~~qtfeGH  139 (794)
T KOG0276|consen   86 TGEKVKTFE---AHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENE----------------------WACEQTFEGH  139 (794)
T ss_pred             cceeeEEee---ccccceeeeeecC-CCCeEEecCCccEEEEeeccCc----------------------eeeeeEEcCc
Confidence            999999999   7999999999999 7778999999999999999984                      4457789999


Q ss_pred             CCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          165 SNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       165 ~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      ...|.+++|+   .+.+++++-|++|++|.+.+..         +..++.+|...|+++.+-+.++..+|++|+.|..|+
T Consensus       140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---------~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiK  210 (794)
T KOG0276|consen  140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---------PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIK  210 (794)
T ss_pred             ceEEEEEEecCCCccceeeeeccccEEEEEcCCCC---------CceeeeccccCcceEEeccCCCcceEEecCCCceEE
Confidence            9999999997   6799999999999999998654         567888999999999999998778999999999999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +||.++.+  ++..+.  +|...|..+.|+|.-..+++|++||+++||+..+
T Consensus       211 vWDyQtk~--CV~TLe--GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T  258 (794)
T KOG0276|consen  211 VWDYQTKS--CVQTLE--GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT  258 (794)
T ss_pred             EeecchHH--HHHHhh--cccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence            99999987  455555  8889999999999999999999999999998654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.9e-38  Score=251.32  Aligned_cols=246  Identities=25%  Similarity=0.391  Sum_probs=208.7

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc-
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV-   83 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~-   83 (294)
                      +...|.++.|+  ++|+ ++++++.++.+++|+..+.+  ..+.+.+|...|++++|+| ++.++++++.|++|++||+ 
T Consensus       158 ~~~sv~~~~fs--~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  158 ECPSVTCVDFS--PDGR-ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             ccCceEEEEEc--CCCC-eEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-CCcEEEEecCCceEEEeecc
Confidence            47789998887  9999 89999999999999998777  7778889999999999999 8999999999999999999 


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      ..+..++.+.   +|...|++++|+| .++++++|+.|++|++||++.                       ..+...+.+
T Consensus       234 ~~~~~~~~l~---gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~-----------------------~~~~~~l~~  286 (456)
T KOG0266|consen  234 DDGRNLKTLK---GHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRT-----------------------GECVRKLKG  286 (456)
T ss_pred             CCCeEEEEec---CCCCceEEEEecC-CCCEEEEecCCCcEEEEeccC-----------------------CeEEEeeec
Confidence            5557888888   7999999999999 669999999999999999998                       567889999


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC--CeeEEEEcccCCcceEEEEcCCCe
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGK  239 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~dg~  239 (294)
                      |...|++++|+  +++|++++.|+.|++||+.++...       +...+..+..  +++.+.|+|++  .+++++..|+.
T Consensus       287 hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~~~~fsp~~--~~ll~~~~d~~  357 (456)
T KOG0266|consen  287 HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-------CLKLLSGAENSAPVTSVQFSPNG--KYLLSASLDRT  357 (456)
T ss_pred             cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-------eeecccCCCCCCceeEEEECCCC--cEEEEecCCCe
Confidence            99999999997  889999999999999999987621       1233333333  58999999999  69999999999


Q ss_pred             EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +++||+............... ...+.+...++.+.++++|+.|+.|++||+.+
T Consensus       358 ~~~w~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  358 LKLWDLRSGKSVGTYTGHSNL-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             EEEEEccCCcceeeecccCCc-ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence            999999988643333321111 12455556678999999999999999999874

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.4e-39  Score=253.07  Aligned_cols=250  Identities=20%  Similarity=0.329  Sum_probs=200.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC--------------------------------c----------
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--------------------------------E----------   43 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------------------------------~----------   43 (294)
                      .|++.|+++.|+  +||+ |||+|+.||.|+||.+..                                .          
T Consensus       265 ah~gaIw~mKFS--~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  265 AHKGAIWAMKFS--HDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             ccCCcEEEEEeC--CCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            899999999998  9999 999999999999998754                                0          


Q ss_pred             ------------------cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEE
Q 022590           44 ------------------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV  105 (294)
Q Consensus        44 ------------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l  105 (294)
                                        ++++.+.+|.+.|.+|.|+.  .++|++++.|.+||+|++...+++..|.    |.+.|+|+
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~----HndfVTcV  415 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS----HNDFVTCV  415 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe----cCCeeEEE
Confidence                              23456789999999999996  5799999999999999999999999998    99999999


Q ss_pred             EEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC
Q 022590          106 DFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV  183 (294)
Q Consensus       106 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~  183 (294)
                      +|+|.+.++|++|+.||.++||++...                        .+.....-..-|++++|.  |+..++|+.
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~------------------------~Vv~W~Dl~~lITAvcy~PdGk~avIGt~  471 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDK------------------------KVVDWNDLRDLITAVCYSPDGKGAVIGTF  471 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcC------------------------eeEeehhhhhhheeEEeccCCceEEEEEe
Confidence            999999999999999999999999972                        233333445789999986  999999999


Q ss_pred             CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCC
Q 022590          184 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS  263 (294)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  263 (294)
                      +|.+++|+....+..... ........+.....|+.+.|.|... ..+++.+.|..|+|||.+..+.  +.+++......
T Consensus       472 ~G~C~fY~t~~lk~~~~~-~I~~~~~Kk~~~~rITG~Q~~p~~~-~~vLVTSnDSrIRI~d~~~~~l--v~KfKG~~n~~  547 (712)
T KOG0283|consen  472 NGYCRFYDTEGLKLVSDF-HIRLHNKKKKQGKRITGLQFFPGDP-DEVLVTSNDSRIRIYDGRDKDL--VHKFKGFRNTS  547 (712)
T ss_pred             ccEEEEEEccCCeEEEee-eEeeccCccccCceeeeeEecCCCC-CeEEEecCCCceEEEeccchhh--hhhhcccccCC
Confidence            999999999876531110 0000111111233799999998775 4677788999999999987763  33444222233


Q ss_pred             CeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          264 PIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       264 ~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .-....|+.||++|+++++|..|++|++.
T Consensus       548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  548 SQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             cceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            44568899999999999999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=3.7e-40  Score=235.80  Aligned_cols=239  Identities=24%  Similarity=0.372  Sum_probs=206.9

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .|-+|.+.|.|+.|.    .+ .+++|+.|.+|+|||+++++++.++-+|.+.|..+.|+.   .++++++.|.++.+||
T Consensus       232 ~L~GHtGSVLCLqyd----~r-viisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWd  303 (499)
T KOG0281|consen  232 ILTGHTGSVLCLQYD----ER-VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWD  303 (499)
T ss_pred             hhhcCCCcEEeeecc----ce-EEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEe
Confidence            355899999999984    55 899999999999999999999999999999999999975   6899999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.....+.....+.||...|+.+.|+   ..++++++.|.+|++|++.+                       ...+..+.
T Consensus       304 m~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st-----------------------~efvRtl~  357 (499)
T KOG0281|consen  304 MASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTST-----------------------CEFVRTLN  357 (499)
T ss_pred             ccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccc-----------------------eeeehhhh
Confidence            98765443333344899999999996   35999999999999999999                       66688899


Q ss_pred             cCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          163 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       163 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      +|...|.|+.+.+.++++|+.|.+|++||+..+.         +++.+++|+.-|.++.|...    .+++|..||.|++
T Consensus       358 gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~---------cLRvLeGHEeLvRciRFd~k----rIVSGaYDGkikv  424 (499)
T KOG0281|consen  358 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA---------CLRVLEGHEELVRCIRFDNK----RIVSGAYDGKIKV  424 (499)
T ss_pred             cccccceehhccCeEEEecCCCceEEEEeccccH---------HHHHHhchHHhhhheeecCc----eeeeccccceEEE
Confidence            9999999999999999999999999999999776         67888999999999999754    5999999999999


Q ss_pred             EeccCCCce-------eeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          243 WELQSSPPV-------LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       243 ~d~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ||+......       ....  ...|.+.|-.+.|.  ...+++++.|.+|.|||+.
T Consensus       425 Wdl~aaldpra~~~~~Cl~~--lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  425 WDLQAALDPRAPASTLCLRT--LVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             EecccccCCcccccchHHHh--hhhccceeEEEeec--ceEEEeccCCCeEEEEEcC
Confidence            999876422       2222  33677889999994  5679999999999999985

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.2e-37  Score=262.33  Aligned_cols=251  Identities=20%  Similarity=0.324  Sum_probs=209.0

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ...|.+++|++ +++. +|++++.||+|++||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.||+|++||+.++.
T Consensus       532 ~~~v~~l~~~~-~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~  609 (793)
T PLN00181        532 RSKLSGICWNS-YIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV  609 (793)
T ss_pred             cCceeeEEecc-CCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc
Confidence            46788999973 3455 899999999999999999999999999999999999997678899999999999999999998


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      .+..+.    +...+.++.|++.++.+|++|+.||.|++||++..                      ..+...+.+|...
T Consensus       610 ~~~~~~----~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~----------------------~~~~~~~~~h~~~  663 (793)
T PLN00181        610 SIGTIK----TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNP----------------------KLPLCTMIGHSKT  663 (793)
T ss_pred             EEEEEe----cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCC----------------------CccceEecCCCCC
Confidence            888876    44689999997657899999999999999999862                      1234556789999


Q ss_pred             eeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          168 VDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       168 i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      |.++.|. +.++++++.|+.|++||++......   ....+..+..|...+..++|+|++  .+|++|+.|+.|++|+..
T Consensus       664 V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~---~~~~l~~~~gh~~~i~~v~~s~~~--~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        664 VSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI---NETPLHSFMGHTNVKNFVGLSVSD--GYIATGSETNEVFVYHKA  738 (793)
T ss_pred             EEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc---CCcceEEEcCCCCCeeEEEEcCCC--CEEEEEeCCCEEEEEECC
Confidence            9999996 7899999999999999998542110   123566778888889999999998  699999999999999987


Q ss_pred             CCCceeeeecc---------ccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          247 SSPPVLIARLS---------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       247 ~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ...+.....+.         ...+...|.+++|+|++..|++|+.||.|+||++
T Consensus       739 ~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        739 FPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            65433222211         1234567999999999999999999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.4e-37  Score=231.13  Aligned_cols=273  Identities=16%  Similarity=0.201  Sum_probs=209.3

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec---ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      +++|..=|+|+.|+  |||. ++++.+.||.|.+||-.+++.+..+.   +|.+.|.+++|+| |+..+++++.|.+++|
T Consensus       186 ~r~HskFV~~VRys--PDG~-~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KI  261 (603)
T KOG0318|consen  186 FREHSKFVNCVRYS--PDGS-RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKI  261 (603)
T ss_pred             ccccccceeeEEEC--CCCC-eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEE
Confidence            45899999999998  9999 99999999999999999999999987   8999999999999 9999999999999999


Q ss_pred             EEcCCCceEEEeecc----------------------------------------CCCCCceeEEEEecCCCceEEeeec
Q 022590           81 WNVQTGICILIFAGA----------------------------------------GGHRNEVLSVDFHPSDIYRIASCGM  120 (294)
Q Consensus        81 wd~~~~~~~~~~~~~----------------------------------------~~~~~~v~~l~~~~~~~~~l~~~~~  120 (294)
                      ||+.+.+++.++...                                        .+|...|+++..+| ++.+|++|+.
T Consensus       262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~Sgsy  340 (603)
T KOG0318|consen  262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSY  340 (603)
T ss_pred             EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeecc
Confidence            999987766554321                                        28999999999999 8899999999


Q ss_pred             CCcEEEEecccccccccc--------------------ceeecCC-----------CC----CCCCceee----------
Q 022590          121 DNTVKIWSMKEFWTYVEK--------------------SFTWTDL-----------PS----KFPTKYVQ----------  155 (294)
Q Consensus       121 dg~i~~wd~~~~~~~~~~--------------------~~~~~~~-----------~~----~~~~~~~~----------  155 (294)
                      ||.|.-|+...+......                    ...++..           ..    ....++..          
T Consensus       341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~a  420 (603)
T KOG0318|consen  341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTA  420 (603)
T ss_pred             CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEE
Confidence            999999999874433110                    0000000           00    00000000          


Q ss_pred             -----eceEEeecCC--------Cceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE
Q 022590          156 -----FPVFIASVHS--------NYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI  220 (294)
Q Consensus       156 -----~~~~~~~~~~--------~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  220 (294)
                           ..+..+..+.        -...+++.  +++.+++|+.|+.+++|.+...+.       ........|..+++.+
T Consensus       421 vv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-------~ee~~~~~h~a~iT~v  493 (603)
T KOG0318|consen  421 VVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-------KEEAKLLEHRAAITDV  493 (603)
T ss_pred             EEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-------cceeeeecccCCceEE
Confidence                 0011111111        11223333  378999999999999999987652       1233445678899999


Q ss_pred             EEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          221 KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       221 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +++|++  .+|+++...+.+.+||+.+.+. .....  .-|...|.+++|+|+..++|||+.|-.|.||+++.
T Consensus       494 aySpd~--~yla~~Da~rkvv~yd~~s~~~-~~~~w--~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~k  561 (603)
T KOG0318|consen  494 AYSPDG--AYLAAGDASRKVVLYDVASREV-KTNRW--AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKK  561 (603)
T ss_pred             EECCCC--cEEEEeccCCcEEEEEcccCce-eccee--eeeeeeEEEEEeCCCceEEEeccccceEEEEEccC
Confidence            999999  6999999999999999999864 22223  36789999999999999999999999999999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=7.2e-38  Score=231.69  Aligned_cols=242  Identities=21%  Similarity=0.393  Sum_probs=215.2

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .+..|+++|.++.|+  .+|. ||++++.|+++.+||..++...+.+..|..+-..+.|-.  ..-+++++.|+.|+|+.
T Consensus       271 tl~~HkgPI~slKWn--k~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~k  345 (524)
T KOG0273|consen  271 TLGQHKGPIFSLKWN--KKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCK  345 (524)
T ss_pred             hhhccCCceEEEEEc--CCCC-EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec--CceEeecCCCceEEEEE
Confidence            456899999999998  8898 999999999999999999999999999998888899975  45799999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +....++.++.   +|.++|.+|.|+| .+.+|++++.|+++++|....                       ......+.
T Consensus       346 v~~~~P~~t~~---GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~-----------------------~~~~~~l~  398 (524)
T KOG0273|consen  346 VGEDRPVKTFI---GHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQ-----------------------SNSVHDLQ  398 (524)
T ss_pred             ecCCCcceeee---cccCceEEEEECC-CCceEEEecCCCeeEeeecCC-----------------------Ccchhhhh
Confidence            99999999999   7999999999999 999999999999999999887                       34456677


Q ss_pred             cCCCceeeccee-----------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590          163 VHSNYVDCNRWL-----------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  231 (294)
Q Consensus       163 ~~~~~i~~~~~~-----------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  231 (294)
                      .|...|..+.|+           +..+++++.|++|++||+..+.         ++..+..|..+|++++|+|++  .++
T Consensus       399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv---------~i~~f~kH~~pVysvafS~~g--~yl  467 (524)
T KOG0273|consen  399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV---------PIHTLMKHQEPVYSVAFSPNG--RYL  467 (524)
T ss_pred             hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---------eeEeeccCCCceEEEEecCCC--cEE
Confidence            788777777775           4589999999999999999776         688898999999999999999  699


Q ss_pred             EEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          232 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |+|+.||.|.+|+.++++.  ....   ...+.|..++|+.+|.+|..+-.||.+++-|++
T Consensus       468 AsGs~dg~V~iws~~~~~l--~~s~---~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  468 ASGSLDGCVHIWSTKTGKL--VKSY---QGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EecCCCCeeEeccccchhe--eEee---cCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9999999999999999873  3333   233569999999999999999999999999986

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.4e-37  Score=211.65  Aligned_cols=244  Identities=23%  Similarity=0.386  Sum_probs=206.0

Q ss_pred             cccccCceeEEEEEeecCC-CceEEEEeecCCeEEEEEcCCc---ccccee-cccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590            3 YVDQKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNE---KLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDES   77 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~---~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~   77 (294)
                      ++..|.+++..++|+  |. |. +||+++.|..|++|+...+   .+...+ .+|+..|++++|+| .+++|++|+.|.+
T Consensus         9 ~~~gh~~r~W~~awh--p~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t   84 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWH--PGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDAT   84 (312)
T ss_pred             eecCCCCcEEEEEec--cCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccce
Confidence            567899999999998  66 77 9999999999999998743   222223 47999999999999 9999999999999


Q ss_pred             EEEEEcCCC--ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           78 VRLWNVQTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        78 i~vwd~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      +.||.-..+  +++..+.   ||...|.+++|++ ++++||+++.|..+-+|.+.....                    -
T Consensus        85 ~~Iw~k~~~efecv~~lE---GHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddE--------------------f  140 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLE---GHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDE--------------------F  140 (312)
T ss_pred             EEEeecCCCceeEEeeee---ccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCc--------------------E
Confidence            999987654  4556666   8999999999999 999999999999999999985221                    2


Q ss_pred             eceEEeecCCCceeecceec--ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590          156 FPVFIASVHSNYVDCNRWLG--DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      .....+..|...|..+.|++  ++|++++.|.+|++|+-....      ...+.+.+..+...+.+++|.+.|  ..|++
T Consensus       141 ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd------dW~c~~tl~g~~~TVW~~~F~~~G--~rl~s  212 (312)
T KOG0645|consen  141 ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD------DWECVQTLDGHENTVWSLAFDNIG--SRLVS  212 (312)
T ss_pred             EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCC------CeeEEEEecCccceEEEEEecCCC--ceEEE
Confidence            34567888999999999995  899999999999999877432      667899999999999999999999  58999


Q ss_pred             EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++.|++++||.....       ++ ..|..++..++|.  ...|++++.|+.|++|.-.
T Consensus       213 ~sdD~tv~Iw~~~~~-------~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  213 CSDDGTVSIWRLYTD-------LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             ecCCcceEeeeeccC-------cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence            999999999997632       11 1455779999998  4589999999999999754

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.4e-38  Score=227.06  Aligned_cols=244  Identities=20%  Similarity=0.348  Sum_probs=218.8

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      .|+.|.+.|..++|.  ..|+ ++++++.|=.+++||.++ .++++.+.+|...|.+++|-| .+.++++++.|.+|+.|
T Consensus       145 ~LrGHt~sv~di~~~--a~Gk-~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P-~gd~ilS~srD~tik~W  220 (406)
T KOG0295|consen  145 SLRGHTDSVFDISFD--ASGK-YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP-LGDHILSCSRDNTIKAW  220 (406)
T ss_pred             hhhccccceeEEEEe--cCcc-EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe-cCCeeeecccccceeEE
Confidence            467899999999997  7888 999999998899999987 577888899999999999999 78999999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      ++.++.++..+.   +|...|..++.+. ++.++++++.|.++++|-+.+                       ......+
T Consensus       221 e~~tg~cv~t~~---~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t-----------------------~~~k~~l  273 (406)
T KOG0295|consen  221 ECDTGYCVKTFP---GHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVAT-----------------------KQCKAEL  273 (406)
T ss_pred             ecccceeEEecc---CchHhEEEEEecC-CeeEEEecCCCceEEEEEecc-----------------------chhhhhh
Confidence            999999999999   7999999999998 999999999999999999998                       3344556


Q ss_pred             ecCCCceeeccee------------c-----ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590          162 SVHSNYVDCNRWL------------G-----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  224 (294)
Q Consensus       162 ~~~~~~i~~~~~~------------~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (294)
                      ..|+.+|.+++|-            +     .++.+++.|++|++||+.++.         ++.++.+|...|..++|+|
T Consensus       274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~---------cL~tL~ghdnwVr~~af~p  344 (406)
T KOG0295|consen  274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM---------CLFTLVGHDNWVRGVAFSP  344 (406)
T ss_pred             hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe---------EEEEEecccceeeeeEEcC
Confidence            6777777777772            2     489999999999999999775         7999999999999999999


Q ss_pred             cCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          225 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       225 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .|  .||+++.+|+++++||+++.+  +...+.  .|..-++++.|+.+-.+++||+-|..+++|.-+
T Consensus       345 ~G--kyi~ScaDDktlrvwdl~~~~--cmk~~~--ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEcr  406 (406)
T KOG0295|consen  345 GG--KYILSCADDKTLRVWDLKNLQ--CMKTLE--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  406 (406)
T ss_pred             CC--eEEEEEecCCcEEEEEeccce--eeeccC--CCcceeEEEecCCCCceEEeccccceeeeeecC
Confidence            99  599999999999999999987  445555  777889999999999999999999999999753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9e-38  Score=213.51  Aligned_cols=230  Identities=20%  Similarity=0.298  Sum_probs=191.9

Q ss_pred             eEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc--eEEEeeccCCCCCc
Q 022590           24 PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRNE  101 (294)
Q Consensus        24 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~  101 (294)
                      -+|++++.|.+||+|...+|.+.++++...+.|+.+...| ++..||+++. ..||+||+++++  ++..|.   +|...
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e---~h~kN   85 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFE---GHTKN   85 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEe---ccCCc
Confidence            3899999999999999999999999998888999999999 8888888876 689999999875  467777   79999


Q ss_pred             eeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEE
Q 022590          102 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL  179 (294)
Q Consensus       102 v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  179 (294)
                      |+++.|.. +++.+++|++||+++|||+|...                        ......|..+|+++..+  ...|+
T Consensus        86 VtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~------------------------~qR~~~~~spVn~vvlhpnQteLi  140 (311)
T KOG0315|consen   86 VTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLS------------------------CQRNYQHNSPVNTVVLHPNQTELI  140 (311)
T ss_pred             eEEEEEee-cCeEEEecCCCceEEEEeccCcc------------------------cchhccCCCCcceEEecCCcceEE
Confidence            99999998 99999999999999999999721                        22334466888888876  56899


Q ss_pred             EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce--eeeecc
Q 022590          180 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV--LIARLS  257 (294)
Q Consensus       180 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~  257 (294)
                      +|..+|.|++||+......        -.-.+.....+.++...|+|  .+++.+...|..++|++-..+..  .....+
T Consensus       141 s~dqsg~irvWDl~~~~c~--------~~liPe~~~~i~sl~v~~dg--sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k  210 (311)
T KOG0315|consen  141 SGDQSGNIRVWDLGENSCT--------HELIPEDDTSIQSLTVMPDG--SMLAAANNKGNCYVWRLLNHQTASELEPVHK  210 (311)
T ss_pred             eecCCCcEEEEEccCCccc--------cccCCCCCcceeeEEEcCCC--cEEEEecCCccEEEEEccCCCccccceEhhh
Confidence            9999999999999876431        12223345679999999999  58999999999999999764321  112222


Q ss_pred             ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          258 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       258 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ...|.+.+..+.+|||+++||++|.|.+++||+++.
T Consensus       211 ~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~  246 (311)
T KOG0315|consen  211 FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD  246 (311)
T ss_pred             eecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence            458889999999999999999999999999999864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-38  Score=251.35  Aligned_cols=255  Identities=21%  Similarity=0.384  Sum_probs=224.3

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      ++....+|..++|.  |... .++++-..|.|++||..-+.++..|..|.++|..++|+| ...++++|+.|..|+||+.
T Consensus         5 fEskSsRvKglsFH--P~rP-wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFH--PKRP-WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNY   80 (1202)
T ss_pred             hhcccccccceecC--CCCC-EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEec
Confidence            45677889999986  7765 999999999999999999999999999999999999999 8889999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .+.+++.++.   +|-+.|..+.|++ .-..+++++.|.+|++|+..+                       +..+..+.+
T Consensus        81 k~rrclftL~---GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqs-----------------------r~~iavltG  133 (1202)
T KOG0292|consen   81 KTRRCLFTLL---GHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQS-----------------------RKCIAVLTG  133 (1202)
T ss_pred             ccceehhhhc---cccceeEEeeccC-CCceEEEccCCCeEEEEeccC-----------------------CceEEEEec
Confidence            9999999888   7999999999999 888899999999999999998                       677889999


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCC---CC-----------------CCCceeeeeeecCCCCeeEEE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS---PG-----------------EGTADILQKYPVPECDIWFIK  221 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~---~~-----------------~~~~~~~~~~~~~~~~i~~~~  221 (294)
                      |...|.|.+|+  .+.+++++-|.+||+||+......   +.                 ....-....+.+|...|+.++
T Consensus       134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA  213 (1202)
T KOG0292|consen  134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA  213 (1202)
T ss_pred             CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence            99999999998  689999999999999999654321   11                 001223355678999999999


Q ss_pred             EcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          222 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       222 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |+|.-  .++++|+.|..|++|.++..+.-.+....  +|.+.|.++-|+|...++++.|+|+.|+|||+..
T Consensus       214 fhpTl--pliVSG~DDRqVKlWrmnetKaWEvDtcr--gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  214 FHPTL--PLIVSGADDRQVKLWRMNETKAWEVDTCR--GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             ecCCc--ceEEecCCcceeeEEEeccccceeehhhh--cccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence            99988  69999999999999999887644444444  8999999999999999999999999999999863

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1e-37  Score=215.28  Aligned_cols=256  Identities=16%  Similarity=0.215  Sum_probs=217.4

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .|..|+.+++-+.++  .+|. +|++++.|.+..||-..+|+.+.++.+|++.|+|+.... +...+++|+.|.++++||
T Consensus         5 ~l~GHERplTqiKyN--~eGD-LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYN--REGD-LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEec--CCCc-EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEE
Confidence            367999999999998  8999 999999999999999999999999999999999999998 889999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-----cCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-----MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-----~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      +++|+++..++    ...+|..+.|++ ++++++.+.     ..+.|.++|++....                ......|
T Consensus        81 v~tGk~la~~k----~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~----------------~~~s~ep  139 (327)
T KOG0643|consen   81 VETGKQLATWK----TNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSS----------------DIDSEEP  139 (327)
T ss_pred             cCCCcEEEEee----cCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChh----------------hhcccCc
Confidence            99999999998    788999999999 777666654     356799999996321                1112556


Q ss_pred             eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590          158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                      ...+..+...++.+-|.  ++.|++|..||.|..||.+++++        .+.....|...|+.+.++++.  .++++++
T Consensus       140 ~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--------~v~s~~~h~~~Ind~q~s~d~--T~FiT~s  209 (327)
T KOG0643|consen  140 YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--------LVDSDEEHSSKINDLQFSRDR--TYFITGS  209 (327)
T ss_pred             eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--------eeechhhhccccccccccCCc--ceEEecc
Confidence            77888888999999997  99999999999999999998764        566667788899999999999  6999999


Q ss_pred             CCCeEEEEeccCCCceeeee--------------------------------------------------c-cccccCCC
Q 022590          236 REGKIFVWELQSSPPVLIAR--------------------------------------------------L-SHAQSKSP  264 (294)
Q Consensus       236 ~dg~i~i~d~~~~~~~~~~~--------------------------------------------------~-~~~~~~~~  264 (294)
                      .|.+-++||..+.+......                                                  + ...+|-+|
T Consensus       210 ~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP  289 (327)
T KOG0643|consen  210 KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP  289 (327)
T ss_pred             cCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC
Confidence            99999999987643111100                                                  0 01257799


Q ss_pred             eEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          265 IRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       265 v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |++++|+|+|+..++|++||.|++.-++.
T Consensus       290 INsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  290 INSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cceeEECCCCcccccCCCCceEEEEEecc
Confidence            99999999999999999999999976643

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.2e-37  Score=247.87  Aligned_cols=246  Identities=24%  Similarity=0.449  Sum_probs=206.4

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEc-CCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV-SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      +.+|...|++++|+  |+|+ ++++++.|++|+|||+ ..+..++++++|...|++++|+| .++++++|+.|++|+|||
T Consensus       199 l~~h~~~v~~~~fs--~d~~-~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd  274 (456)
T KOG0266|consen  199 LSGHTRGVSDVAFS--PDGS-YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWD  274 (456)
T ss_pred             ccccccceeeeEEC--CCCc-EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEe
Confidence            35799999999998  9998 9999999999999999 55688999999999999999999 669999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +++++++..+.   +|.+.|++++|++ ++++|++++.|+.|++||+.++...                     ....+.
T Consensus       275 ~~~~~~~~~l~---~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~---------------------~~~~~~  329 (456)
T KOG0266|consen  275 VRTGECVRKLK---GHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKL---------------------CLKLLS  329 (456)
T ss_pred             ccCCeEEEeee---ccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCcee---------------------eeeccc
Confidence            99999999999   7999999999999 9999999999999999999984311                     223334


Q ss_pred             cCCC--ceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC---eeEEEEcccCCcceEEEEc
Q 022590          163 VHSN--YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD---IWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       163 ~~~~--~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~~~l~~~~  235 (294)
                      .+..  ++.++.|+  +.++++++.|+.+++||++.+.         ....+..+...   +.....++.+  .++++|+
T Consensus       330 ~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~--~~i~sg~  398 (456)
T KOG0266|consen  330 GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK---------SVGTYTGHSNLVRCIFSPTLSTGG--KLIYSGS  398 (456)
T ss_pred             CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc---------ceeeecccCCcceeEecccccCCC--CeEEEEe
Confidence            4444  48888886  8899999999999999999775         34445555443   3333445555  6999999


Q ss_pred             CCCeEEEEeccCCCceeeeecccccc-CCCeEEEEEccCCCEEEEec--cCCcEEEEecCC
Q 022590          236 REGKIFVWELQSSPPVLIARLSHAQS-KSPIRQTAMSYDGSTILSCC--EDGAIWRWDAIP  293 (294)
Q Consensus       236 ~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~--~dg~i~vw~~~~  293 (294)
                      .|+.|++||+.+..  ....+.  +| ...+..+.++|..+++++++  .|+.+++|....
T Consensus       399 ~d~~v~~~~~~s~~--~~~~l~--~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~  455 (456)
T KOG0266|consen  399 EDGSVYVWDSSSGG--ILQRLE--GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF  455 (456)
T ss_pred             CCceEEEEeCCccc--hhhhhc--CCCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence            99999999999865  333443  56 78899999999999999998  789999998753

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7.7e-37  Score=219.42  Aligned_cols=253  Identities=18%  Similarity=0.286  Sum_probs=211.6

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      .+++.|.++|++++.+  |+.+ ++++|+.|..-.+|+..++.....+.+|.+.|+++.|+. ++.+||+|+.+|.|+||
T Consensus        58 ~tF~~H~~svFavsl~--P~~~-l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~  133 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLH--PNNN-LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVF  133 (399)
T ss_pred             eehhhcCCceEEEEeC--CCCc-eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEE
Confidence            4677999999999997  7666 999999999999999999999999999999999999999 99999999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      ...++.....+.   ..-..+.=+.|+| ...+|+.|+.||.+.+|.+..                       +.....+
T Consensus       134 ~~stg~~~~~~~---~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~-----------------------~~~~kv~  186 (399)
T KOG0296|consen  134 KVSTGGEQWKLD---QEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPS-----------------------QALCKVM  186 (399)
T ss_pred             EcccCceEEEee---cccCceEEEEecc-cccEEEeecCCCcEEEEECCC-----------------------cceeeEe
Confidence            999998888776   3566788899999 999999999999999999998                       3446677


Q ss_pred             ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCC-------------------------------------
Q 022590          162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG-------------------------------------  202 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------------------------------  202 (294)
                      .+|..++++-.|.  |+.++++..||+|++||+.+++......                                     
T Consensus       187 ~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK  266 (399)
T KOG0296|consen  187 SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGK  266 (399)
T ss_pred             cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccce
Confidence            8888888888775  8889999999999999988775420000                                     


Q ss_pred             -------------------------------------------------CceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590          203 -------------------------------------------------TADILQKYPVPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       203 -------------------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                                                                       ....++..-.|..+|..+.|-+.   .+|++
T Consensus       267 Vv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t---~~l~t  343 (399)
T KOG0296|consen  267 VVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNT---DYLLT  343 (399)
T ss_pred             EEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCc---chhee
Confidence                                                             00011222334556777788773   48999


Q ss_pred             EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++.+|.|+.||.++++.+.  .+.  +|..+|.+++++|+.++++|+|.|+..+||++.
T Consensus       344 ~c~~g~v~~wDaRtG~l~~--~y~--GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  344 ACANGKVRQWDARTGQLKF--TYT--GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eccCceEEeeeccccceEE--EEe--cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999999999999997433  333  999999999999999999999999999999864

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.5e-37  Score=240.32  Aligned_cols=248  Identities=17%  Similarity=0.299  Sum_probs=210.9

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      +.|...+++++++  |||+ ++|+|+.||.|+|||...+-+..++..|+..|+.+.|+. .++.+++.+-||+|+.||+.
T Consensus       347 QgH~~~i~~l~YS--pDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlk  422 (893)
T KOG0291|consen  347 QGHSDRITSLAYS--PDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLK  422 (893)
T ss_pred             cccccceeeEEEC--CCCc-EEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeec
Confidence            4789999999998  9999 999999999999999999999999999999999999999 89999999999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC-cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .....++|..  ...-...|++..| .+.++.+|+.|. .|.+|++++                       ...+..+.+
T Consensus       423 RYrNfRTft~--P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qT-----------------------GqllDiLsG  476 (893)
T KOG0291|consen  423 RYRNFRTFTS--PEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQT-----------------------GQLLDILSG  476 (893)
T ss_pred             ccceeeeecC--CCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeec-----------------------CeeeehhcC
Confidence            9999999885  2344568899999 888888888876 599999999                       556788999


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      |+++|.+++|+  ++.|++++.|.+|++||+-....        ....++. ...+..++|.|+|  ..+++++.||.|.
T Consensus       477 HEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--------~vEtl~i-~sdvl~vsfrPdG--~elaVaTldgqIt  545 (893)
T KOG0291|consen  477 HEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--------TVETLEI-RSDVLAVSFRPDG--KELAVATLDGQIT  545 (893)
T ss_pred             CCCcceeeEEccccCeEEeccccceEEEEEeeccCc--------eeeeEee-ccceeEEEEcCCC--CeEEEEEecceEE
Confidence            99999998887  89999999999999999976432        2333333 4568899999999  5899999999999


Q ss_pred             EEeccCCCcee----------------eeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          242 VWELQSSPPVL----------------IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       242 i~d~~~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +||.+......                ...........+.+.+++++||.++++|+....|++|++.+
T Consensus       546 f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  546 FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             EEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence            99987653210                01111223446899999999999999999999999999865

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4e-36  Score=228.53  Aligned_cols=245  Identities=26%  Similarity=0.472  Sum_probs=209.0

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .++.|.++|++++|+  |+++ +|++++.||.|++|++.+++....+..|...+..+.|+| +++++++++.||.|++|+
T Consensus         4 ~~~~h~~~i~~~~~~--~~~~-~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           4 TLKGHTGGVTCVAFS--PDGK-LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWD   79 (289)
T ss_pred             HhcccCCCEEEEEEc--CCCC-EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEE
Confidence            466899999999998  8888 999999999999999999888888899999999999999 778999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.+++.+..+.   .|...+.++.|+| ++.++++++.|+.+++||+++                       ......+.
T Consensus        80 ~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-----------------------~~~~~~~~  132 (289)
T cd00200          80 LETGECVRTLT---GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVET-----------------------GKCLTTLR  132 (289)
T ss_pred             cCcccceEEEe---ccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCC-----------------------cEEEEEec
Confidence            99888777777   6888999999999 678888888899999999986                       33445556


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      .|...+.++.|+  +.++++++.++.|++||++.++         ....+..+...+.++.|+|++  ..+++++.+|.|
T Consensus       133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~~~~i  201 (289)
T cd00200         133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---------CVATLTGHTGEVNSVAFSPDG--EKLLSSSSDGTI  201 (289)
T ss_pred             cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc---------cceeEecCccccceEEECCCc--CEEEEecCCCcE
Confidence            788899999997  4677777779999999998654         345556777789999999998  578888889999


Q ss_pred             EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++||++..+.  ...+.  .|..++.+++|+|++.++++++.||.|++||+.+
T Consensus       202 ~i~d~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~  250 (289)
T cd00200         202 KLWDLSTGKC--LGTLR--GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT  250 (289)
T ss_pred             EEEECCCCce--ecchh--hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence            9999988653  33332  5567899999999999999998899999999863

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.5e-37  Score=215.85  Aligned_cols=247  Identities=20%  Similarity=0.383  Sum_probs=213.7

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .++.|+++|..+.|.  +|++ .+++++.|.+|+.||.++|+.++.+++|.+-|+++.-+..+..++.+++.||++++||
T Consensus        85 ~lkgHsgAVM~l~~~--~d~s-~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D  161 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGM--RDGS-HILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWD  161 (338)
T ss_pred             eeccccceeEeeeec--cCCC-EEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEe
Confidence            456899999999998  8998 9999999999999999999999999999999999986655667899999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +++.+.++.+.    .+-+++++.|.. .+..+.+|+-|+.|++||++.                       ......+.
T Consensus       162 ~R~k~~~~t~~----~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~-----------------------~d~~~~ls  213 (338)
T KOG0265|consen  162 IRKKEAIKTFE----NKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRK-----------------------NDGLYTLS  213 (338)
T ss_pred             ecccchhhccc----cceeEEEEEecc-cccceeeccccCceeeecccc-----------------------CcceEEee
Confidence            99999988886    677899999997 778899999999999999998                       55688999


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC----CCeeEEEEcccCCcceEEEEcC
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE----CDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      +|.++|+.+..+  |.++.+-+.|.++++||++....     ...++..+.++.    .....++|+|++  ..+.+|+.
T Consensus       214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p-----~~R~v~if~g~~hnfeknlL~cswsp~~--~~i~ags~  286 (338)
T KOG0265|consen  214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP-----SQRCVKIFQGHIHNFEKNLLKCSWSPNG--TKITAGSA  286 (338)
T ss_pred             cccCceeeEEeccCCCccccccccceEEEEEecccCC-----CCceEEEeecchhhhhhhcceeeccCCC--Cccccccc
Confidence            999999999886  89999999999999999986542     222344444432    335567899988  68999999


Q ss_pred             CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      |..+++||.....  ....++  +|.+.|++++|+|...+|.+++.|.+|++=++
T Consensus       287 dr~vyvwd~~~r~--~lyklp--Gh~gsvn~~~Fhp~e~iils~~sdk~i~lgei  337 (338)
T KOG0265|consen  287 DRFVYVWDTTSRR--ILYKLP--GHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI  337 (338)
T ss_pred             cceEEEeeccccc--EEEEcC--CcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence            9999999998864  555665  99999999999999999999999999987443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8e-38  Score=228.15  Aligned_cols=270  Identities=20%  Similarity=0.322  Sum_probs=202.9

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---cccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      .+.+|.+.|+-+.|+  ++|+ +||+++.|.+..+|++...   +..+++.+|..+|..+.|+| |.++|++|+.|..+.
T Consensus       219 il~~htdEVWfl~FS--~nGk-yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFS--HNGK-YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLS  294 (519)
T ss_pred             hHhhCCCcEEEEEEc--CCCe-eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHhee
Confidence            356899999999998  9999 9999999999999998654   34778899999999999999 889999999999999


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccc----------ceeecCCCCC-
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK----------SFTWTDLPSK-  148 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----------~~~~~~~~~~-  148 (294)
                      +||+.+|.....+..  ++...+.+.+|.| ++..+++|+.|+.+..||+.......=.          .++.++.... 
T Consensus       295 lwDv~tgd~~~~y~~--~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~  371 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPS--GLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLL  371 (519)
T ss_pred             eccCCcchhhhhccc--CcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEE
Confidence            999999999888874  4668899999999 8899999999999999999873211100          0000000000 


Q ss_pred             --CCCceee----ece-EEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590          149 --FPTKYVQ----FPV-FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF  219 (294)
Q Consensus       149 --~~~~~~~----~~~-~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~  219 (294)
                        .......    ..+ ..+..-..+|++++.+  +.++++.-.+..+++||++...         .++++.+|...-.-
T Consensus       372 v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~---------lv~kY~Ghkq~~fi  442 (519)
T KOG0293|consen  372 VTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENK---------LVRKYFGHKQGHFI  442 (519)
T ss_pred             EecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhh---------HHHHhhcccccceE
Confidence              0000000    000 0122234567777665  7788888899999999998544         45666666544333


Q ss_pred             E--EEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecCC
Q 022590          220 I--KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       220 ~--~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~  293 (294)
                      +  +|.-... .++++|++|+.|+||+..+++  ....+.  +|...|++++|+|.. .++|+||.||+|+||...+
T Consensus       443 IrSCFgg~~~-~fiaSGSED~kvyIWhr~sgk--ll~~Ls--GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  443 IRSCFGGGND-KFIASGSEDSKVYIWHRISGK--LLAVLS--GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             EEeccCCCCc-ceEEecCCCceEEEEEccCCc--eeEeec--CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            3  3333222 699999999999999999997  444555  899999999999954 6889999999999998763

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.8e-36  Score=254.27  Aligned_cols=243  Identities=16%  Similarity=0.274  Sum_probs=197.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----c----ccceecccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----K----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDES   77 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~   77 (294)
                      .|.+.|.+++|+  |+|+ ++|+|+.|+.|+||+....    .    +...+. +...|.+++|++..+.+|++++.||+
T Consensus       481 ~~~~~V~~i~fs--~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~  556 (793)
T PLN00181        481 NSSNLVCAIGFD--RDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV  556 (793)
T ss_pred             CCCCcEEEEEEC--CCCC-EEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence            488999999998  8998 9999999999999997542    1    112233 35689999999866789999999999


Q ss_pred             EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      |++||+.+++.+..+.   +|...|++++|+|.++.+|++|+.||.|++||+++.                       ..
T Consensus       557 v~lWd~~~~~~~~~~~---~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~-----------------------~~  610 (793)
T PLN00181        557 VQVWDVARSQLVTEMK---EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG-----------------------VS  610 (793)
T ss_pred             EEEEECCCCeEEEEec---CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC-----------------------cE
Confidence            9999999998888877   799999999999767889999999999999999873                       22


Q ss_pred             eEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          158 VFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                      ...+.. ...+.++.|.   +.+|++|+.||.|++||++....        .+..+..|...|..+.|. ++  .+++++
T Consensus       611 ~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--------~~~~~~~h~~~V~~v~f~-~~--~~lvs~  678 (793)
T PLN00181        611 IGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--------PLCTMIGHSKTVSYVRFV-DS--STLVSS  678 (793)
T ss_pred             EEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--------cceEecCCCCCEEEEEEe-CC--CEEEEE
Confidence            333333 3567888884   78999999999999999986532        344556788899999997 44  589999


Q ss_pred             cCCCeEEEEeccCCC----ceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          235 NREGKIFVWELQSSP----PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       235 ~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +.|+.|++||++...    ......+.  +|...+..++|+|++++|++|+.||.|++|+..
T Consensus       679 s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~  738 (793)
T PLN00181        679 STDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA  738 (793)
T ss_pred             ECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence            999999999997532    11233333  778889999999999999999999999999964

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.4e-36  Score=224.35  Aligned_cols=281  Identities=17%  Similarity=0.234  Sum_probs=220.0

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|...|++++|-  |.....+++|+.|++|.+|+-.--+...++..|..-|+|+.|+| ++.++++++.||+|.+||-
T Consensus       143 i~GhSr~ins~~~K--psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDG  219 (603)
T KOG0318|consen  143 ITGHSRRINSVDFK--PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDG  219 (603)
T ss_pred             eeccceeEeeeecc--CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC-CCCeEEEecCCccEEEEcC
Confidence            46899999999998  66666899999999999999777777788889999999999999 8999999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeec-----------C--------
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT-----------D--------  144 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-----------~--------  144 (294)
                      .+++.+..+....+|++.|.+|+|+| ++..+++++.|.++++||+.+.....+......           .        
T Consensus       220 ktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl  298 (603)
T KOG0318|consen  220 KTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSL  298 (603)
T ss_pred             CCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEc
Confidence            99999999987778999999999999 889999999999999999988533222111111           0        


Q ss_pred             --CCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC--CCceee-----------
Q 022590          145 --LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE--GTADIL-----------  207 (294)
Q Consensus       145 --~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~-----------  207 (294)
                        ...-.... ...+...+.+|...|+++..+  +.+|++|+.||.|.-||..++......  .+...+           
T Consensus       299 ~G~in~ln~~-d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~  377 (603)
T KOG0318|consen  299 SGTINYLNPS-DPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL  377 (603)
T ss_pred             CcEEEEeccc-CCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence              00000111 122567788999999999987  789999999999999999876543110  000000           


Q ss_pred             ---------ee------------------------------------------ee--------cCCCCeeEEEEcccCCc
Q 022590          208 ---------QK------------------------------------------YP--------VPECDIWFIKFSCDFHY  228 (294)
Q Consensus       208 ---------~~------------------------------------------~~--------~~~~~i~~~~~~~~~~~  228 (294)
                               +.                                          +.        ...-...+++++|++  
T Consensus       378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~--  455 (603)
T KOG0318|consen  378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG--  455 (603)
T ss_pred             EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC--
Confidence                     00                                          00        001133567788888  


Q ss_pred             ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ..+++|+.||.|++|.+...+........  .|.++|+++++|||+.|||+|...+.+.+||+.+
T Consensus       456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~--~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s  518 (603)
T KOG0318|consen  456 SEVAVGGQDGKVHVYSLSGDELKEEAKLL--EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS  518 (603)
T ss_pred             CEEEEecccceEEEEEecCCcccceeeee--cccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence            58999999999999999987644443433  7889999999999999999999999999999875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.6e-36  Score=235.48  Aligned_cols=241  Identities=23%  Similarity=0.407  Sum_probs=204.5

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecC-CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGIN-GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .+.+|..++|+  ..|. .||.|+.. |.+.||+..+...+...++|...+++++++| |++++|+|+.||.|+|||..+
T Consensus       306 s~~~I~t~~~N--~tGD-WiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~S  381 (893)
T KOG0291|consen  306 SDQKILTVSFN--STGD-WIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQS  381 (893)
T ss_pred             ccceeeEEEec--ccCC-EEEEcCCccceEEEEEeeccceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccC
Confidence            45678888887  7788 89988766 8999999999998889999999999999999 999999999999999999999


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec-C
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-H  164 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  164 (294)
                      +-+..+|.   .|++.|+.+.|+. .++.+++++.||+|+.||+.....                       ..++.. .
T Consensus       382 gfC~vTFt---eHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrN-----------------------fRTft~P~  434 (893)
T KOG0291|consen  382 GFCFVTFT---EHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRN-----------------------FRTFTSPE  434 (893)
T ss_pred             ceEEEEec---cCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccce-----------------------eeeecCCC
Confidence            99999999   6999999999998 999999999999999999987432                       111111 2


Q ss_pred             CCceeeccee--cceEEEeeCCC-eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          165 SNYVDCNRWL--GDFILSKSVDN-EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      +....|++.+  |..+.+|+.|. .|.+|++++++         .+..+.+|+++|.+++|+|.+  ..|++++.|.+|+
T Consensus       435 p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---------llDiLsGHEgPVs~l~f~~~~--~~LaS~SWDkTVR  503 (893)
T KOG0291|consen  435 PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---------LLDILSGHEGPVSGLSFSPDG--SLLASGSWDKTVR  503 (893)
T ss_pred             ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---------eeehhcCCCCcceeeEEcccc--CeEEeccccceEE
Confidence            2334455554  88888888876 49999999887         688889999999999999999  5999999999999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +||+-.... ....+   .+...+..++|.|+|+-|+++.-||.|.+||++.
T Consensus       504 iW~if~s~~-~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~  551 (893)
T KOG0291|consen  504 IWDIFSSSG-TVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE  551 (893)
T ss_pred             EEEeeccCc-eeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence            999976532 12222   3335699999999999999999999999999864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=2.7e-37  Score=227.57  Aligned_cols=255  Identities=17%  Similarity=0.262  Sum_probs=213.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc----------ccceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----------LHKSFVGHGDSINEIRTQPLKPSLVVSASKD   75 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   75 (294)
                      -|.+.|+.+...  |....++|+++..+.|.|||..+..          +-.++.+|.+.-.+|+|+++..-.|++++.|
T Consensus       122 ~h~gEVnRaRym--PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  122 NHDGEVNRARYM--PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             cCCccchhhhhC--CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            688999999998  6565589999999999999986431          2237889999889999999888899999999


Q ss_pred             CcEEEEEcCCCce----EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           76 ESVRLWNVQTGIC----ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        76 g~i~vwd~~~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      ++|++||+.....    +.....+.+|...|..++|++....+|++++.|+.+.|||+|+..                  
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~------------------  261 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT------------------  261 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC------------------
Confidence            9999999975432    222222338999999999999889999999999999999999621                  


Q ss_pred             ceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCc
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY  228 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (294)
                         ..+.....+|.+.|.|++|+   +..||+|+.|++|++||+|+...        .+..+..|...|..+.|+|... 
T Consensus       262 ---~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--------~lh~~e~H~dev~~V~WSPh~e-  329 (422)
T KOG0264|consen  262 ---SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--------PLHTFEGHEDEVFQVEWSPHNE-  329 (422)
T ss_pred             ---CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--------CceeccCCCcceEEEEeCCCCC-
Confidence               44556678899999999997   78999999999999999998764        7888999999999999999987 


Q ss_pred             ceEEEEcCCCeEEEEeccCCCce----------eeeeccccccCCCeEEEEEccCCCE-EEEeccCCcEEEEecC
Q 022590          229 NAAAIGNREGKIFVWELQSSPPV----------LIARLSHAQSKSPIRQTAMSYDGST-ILSCCEDGAIWRWDAI  292 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~vw~~~  292 (294)
                      ..|++++.|+.+.+||+..-...          ....+.|.+|...|..+.|+|+..+ +++.++|+.+.||+..
T Consensus       330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            79999999999999999753211          2334557799999999999998765 5678999999999875

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-36  Score=241.09  Aligned_cols=267  Identities=18%  Similarity=0.267  Sum_probs=219.5

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +++|+++|..++|.  |.+. ++++|+.|-.|+||+.++.+++.++.+|-+-|..+.|++ .-..+++++.|.+|+||+.
T Consensus        47 FdeHdGpVRgv~FH--~~qp-lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNw  122 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFH--PTQP-LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNW  122 (1202)
T ss_pred             hhccCCccceeeec--CCCC-eEEecCCccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEec
Confidence            56999999999996  8887 999999999999999999999999999999999999999 8889999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC------Cceeeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP------TKYVQFP  157 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  157 (294)
                      .+++++..+.   ||...|.|..|+| ...++++++.|.+||+||+...+.........+.......      ...-...
T Consensus       123 qsr~~iavlt---GHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV  198 (1202)
T KOG0292|consen  123 QSRKCIAVLT---GHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV  198 (1202)
T ss_pred             cCCceEEEEe---cCceEEEeeccCC-ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence            9999999999   7999999999999 8889999999999999999874433222221111111110      1111223


Q ss_pred             eEEeecCCCceeecceec--ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590          158 VFIASVHSNYVDCNRWLG--DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                      ...+.+|...|+-++|++  .++++|+.|+.|++|.+...+.       -.+....+|...|.++-|+|..  +++++.+
T Consensus       199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-------WEvDtcrgH~nnVssvlfhp~q--~lIlSns  269 (1202)
T KOG0292|consen  199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-------WEVDTCRGHYNNVSSVLFHPHQ--DLILSNS  269 (1202)
T ss_pred             eeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-------eeehhhhcccCCcceEEecCcc--ceeEecC
Confidence            457899999999999996  7999999999999999875431       1345566788999999999988  6999999


Q ss_pred             CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          236 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       236 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +|+.|++||+...+.+...+..    ......++-+|..+++++| .|+-+.||.++
T Consensus       270 EDksirVwDm~kRt~v~tfrre----ndRFW~laahP~lNLfAAg-HDsGm~VFkle  321 (1202)
T KOG0292|consen  270 EDKSIRVWDMTKRTSVQTFRRE----NDRFWILAAHPELNLFAAG-HDSGMIVFKLE  321 (1202)
T ss_pred             CCccEEEEecccccceeeeecc----CCeEEEEEecCCcceeeee-cCCceEEEEEc
Confidence            9999999999988765555433    3568899999999988877 45557777775

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-37  Score=235.01  Aligned_cols=240  Identities=23%  Similarity=0.427  Sum_probs=210.6

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      ++..+.||.+..|-  +.-+ .+++|+.|..|+||+..+++.++.|.+|.+-|++++.+| ...++++++.|-+|++||.
T Consensus        51 feV~~~PvRa~kfi--aRkn-Wiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~w  126 (794)
T KOG0276|consen   51 FEVSEVPVRAAKFI--ARKN-WIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDW  126 (794)
T ss_pred             eeecccchhhheee--eccc-eEEEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeec
Confidence            34566788888886  4444 999999999999999999999999999999999999999 6779999999999999999


Q ss_pred             CCC-ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           84 QTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        84 ~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.+ .+.+.|.   +|...|.+++|+|.+.+.+++++.|++|++|.+.+                       ..|..++.
T Consensus       127 e~~wa~~qtfe---GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-----------------------~~~nfTl~  180 (794)
T KOG0276|consen  127 ENEWACEQTFE---GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-----------------------PHPNFTLE  180 (794)
T ss_pred             cCceeeeeEEc---CcceEEEEEEecCCCccceeeeeccccEEEEEcCC-----------------------CCCceeee
Confidence            754 5666777   89999999999999999999999999999999998                       67888999


Q ss_pred             cCCCceeeccee-c---ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          163 VHSNYVDCNRWL-G---DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       163 ~~~~~i~~~~~~-~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      +|...|+|+.|- +   .+|++|+.|.++++||.++..         +++.+.+|...|..+.|+|.-  .++++|++||
T Consensus       181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~---------CV~TLeGHt~Nvs~v~fhp~l--piiisgsEDG  249 (794)
T KOG0276|consen  181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS---------CVQTLEGHTNNVSFVFFHPEL--PIIISGSEDG  249 (794)
T ss_pred             ccccCcceEEeccCCCcceEEecCCCceEEEeecchHH---------HHHHhhcccccceEEEecCCC--cEEEEecCCc
Confidence            999999999995 3   499999999999999999765         789999999999999999998  6999999999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEE
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR  288 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v  288 (294)
                      +++||+..+.+...  .+.  -....+.+++-.+.++.++.|..+|.|.+
T Consensus       250 TvriWhs~Ty~lE~--tLn--~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  250 TVRIWNSKTYKLEK--TLN--YGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             cEEEecCcceehhh--hhh--cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            99999998875333  332  22357999999998888999988887654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=6.5e-38  Score=214.51  Aligned_cols=254  Identities=19%  Similarity=0.328  Sum_probs=214.4

Q ss_pred             cccCceeEEEEEee-cCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            5 DQKEESFYTVSWAC-NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         5 ~~h~~~v~~~~~~~-~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      ..|..+|-.++|++ .|+|- +|++++.||.-.+-+-++|.-+.+|.+|.++|.+..... +....++++.|-+-++||.
T Consensus        11 ~ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDA   88 (334)
T ss_pred             cCCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhh
Confidence            37999999999995 56786 999999999999999999999999999999999999998 7788899999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      -+|..+..|.    |..-|.+++|+. +.++|++|+.+..+++||++..                      ..|...+.+
T Consensus        89 ~tgdelhsf~----hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p----------------------~App~E~~g  141 (334)
T KOG0278|consen   89 VTGDELHSFE----HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRP----------------------KAPPKEISG  141 (334)
T ss_pred             hhhhhhhhhh----hhheeeeEEecc-cchhhhccchHHHhhhhhccCC----------------------CCCchhhcC
Confidence            9999999997    999999999998 8889999999999999999983                      445667889


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCC-------------------------------Cceeeeee
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG-------------------------------TADILQKY  210 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------------------------~~~~~~~~  210 (294)
                      |++.|..+.|.  .+.+++++.|++||+||.+++.......                               ....+..+
T Consensus       142 htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~  221 (334)
T KOG0278|consen  142 HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSY  221 (334)
T ss_pred             CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeec
Confidence            99999999997  7788888999999999999886421110                               11111222


Q ss_pred             ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          211 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      .. .+.|.+..++|+.  ..+++|++|+.++.||..+++.+...   ..+|.++|.|+.|+|+|...++||+||+|++|.
T Consensus       222 k~-P~nV~SASL~P~k--~~fVaGged~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  222 KM-PCNVESASLHPKK--EFFVAGGEDFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             cC-ccccccccccCCC--ceEEecCcceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            22 2346667777776  68999999999999999998744432   248889999999999999999999999999998


Q ss_pred             cCC
Q 022590          291 AIP  293 (294)
Q Consensus       291 ~~~  293 (294)
                      +.+
T Consensus       296 t~~  298 (334)
T KOG0278|consen  296 TTP  298 (334)
T ss_pred             ecC
Confidence            754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-36  Score=236.34  Aligned_cols=246  Identities=18%  Similarity=0.276  Sum_probs=213.0

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      +.+|++.|.+++..  .+|. +|++|+.|.++++|.++++    .++....+|+..|.+++++.....+|++++.|++++
T Consensus       361 i~GH~e~vlSL~~~--~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK  437 (775)
T KOG0319|consen  361 IPGHTEAVLSLDVW--SSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK  437 (775)
T ss_pred             EeCchhheeeeeec--ccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence            35899999999933  5676 9999999999999987443    345667899999999999887778999999999999


Q ss_pred             EEEcCCCceEE---Ee---eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           80 LWNVQTGICIL---IF---AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        80 vwd~~~~~~~~---~~---~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      +|++...+...   .+   .....|...|++++.+| +..+++||+.|.+.++|++.+                      
T Consensus       438 ~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~----------------------  494 (775)
T KOG0319|consen  438 LWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQ----------------------  494 (775)
T ss_pred             EecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccC----------------------
Confidence            99997622111   11   01236999999999999 889999999999999999997                      


Q ss_pred             eeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590          154 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  231 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  231 (294)
                       ......+.+|...|.++.|+  .+.+++++.|++|+||.+.+..         ++.++.+|.+.|..+.|-.++  ..|
T Consensus       495 -~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS---------ClkT~eGH~~aVlra~F~~~~--~ql  562 (775)
T KOG0319|consen  495 -LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS---------CLKTFEGHTSAVLRASFIRNG--KQL  562 (775)
T ss_pred             -ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce---------eeeeecCccceeEeeeeeeCC--cEE
Confidence             55678899999999999998  5699999999999999999765         799999999999999999999  589


Q ss_pred             EEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          232 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ++++.||.|++|++++++  +...+.  .|...|.+++.+|.+.+++||+.||.|.+|.=
T Consensus       563 iS~~adGliKlWnikt~e--C~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  563 ISAGADGLIKLWNIKTNE--CEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             EeccCCCcEEEEeccchh--hhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeec
Confidence            999999999999999987  455555  89999999999999999999999999999963

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=4.9e-35  Score=222.60  Aligned_cols=241  Identities=28%  Similarity=0.480  Sum_probs=205.5

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|...+..+.|.  |+++ ++++++.||.|++|++.+++....+..|...|.++.|++ ++.++++++.||.|.+||+
T Consensus        47 ~~~~~~~i~~~~~~--~~~~-~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~  122 (289)
T cd00200          47 LKGHTGPVRDVAAS--ADGT-YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDV  122 (289)
T ss_pred             EecCCcceeEEEEC--CCCC-EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEEC
Confidence            34678888888887  8887 899999999999999999888888999999999999999 6788888888999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .+++....+.   .|...+.+++|+| ++.++++++.|+.+++||++.                       ......+..
T Consensus       123 ~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~-----------------------~~~~~~~~~  175 (289)
T cd00200         123 ETGKCLTTLR---GHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRT-----------------------GKCVATLTG  175 (289)
T ss_pred             CCcEEEEEec---cCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccc-----------------------cccceeEec
Confidence            9888888777   6899999999999 788888888899999999986                       334455567


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      |...+.++.|+  ++.+++++.++.+++||++.++         .+..+..+...+..+.|+|++  .++++++.+|.|+
T Consensus       176 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~  244 (289)
T cd00200         176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGK---------CLGTLRGHENGVNSVAFSPDG--YLLASGSEDGTIR  244 (289)
T ss_pred             CccccceEEECCCcCEEEEecCCCcEEEEECCCCc---------eecchhhcCCceEEEEEcCCC--cEEEEEcCCCcEE
Confidence            88899999997  4489998999999999998654         445555667789999999986  6888888899999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      +||+.+.+.  ...+.  .|...|.+++|+|++++|++++.||.|++|+
T Consensus       245 i~~~~~~~~--~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         245 VWDLRTGEC--VQTLS--GHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEcCCcee--EEEcc--ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999987653  33333  6677899999999999999999999999996

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6e-36  Score=222.34  Aligned_cols=237  Identities=19%  Similarity=0.358  Sum_probs=202.8

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ++.|++++|.  .||+ +||+|...|.|+|+|..+...++.+.+|+.+|..+.|+|+++..|++|+.|+.+++||+.+..
T Consensus        68 k~~v~s~~fR--~DG~-LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~  144 (487)
T KOG0310|consen   68 KDVVYSVDFR--SDGR-LLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY  144 (487)
T ss_pred             ccceeEEEee--cCCe-EEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence            4678999998  8999 999999999999999888778899999999999999999999999999999999999999888


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      ....+.   +|++.|.|.+|+|.+++++++|+.||.|++||++..                       .+......|..+
T Consensus       145 v~~~l~---~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~-----------------------~~~v~elnhg~p  198 (487)
T KOG0310|consen  145 VQAELS---GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL-----------------------TSRVVELNHGCP  198 (487)
T ss_pred             EEEEec---CCcceeEeeccccCCCeEEEecCCCceEEEEEeccC-----------------------CceeEEecCCCc
Confidence            655566   799999999999988899999999999999999982                       233445568899


Q ss_pred             eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      |..+.+-  |..+++++ ...+++||+.++.+        .+.....|...|+++++..++  ..|++|+-|+.+++||+
T Consensus       199 Ve~vl~lpsgs~iasAg-Gn~vkVWDl~~G~q--------ll~~~~~H~KtVTcL~l~s~~--~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  199 VESVLALPSGSLIASAG-GNSVKVWDLTTGGQ--------LLTSMFNHNKTVTCLRLASDS--TRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             eeeEEEcCCCCEEEEcC-CCeEEEEEecCCce--------ehhhhhcccceEEEEEeecCC--ceEeecccccceEEEEc
Confidence            9999885  56777765 46899999997653        445555588899999999988  68999999999999998


Q ss_pred             cCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEE
Q 022590          246 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW  289 (294)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw  289 (294)
                      .+.+  ....+...   ++|.+++.+|+++.++.|-.||.+.+=
T Consensus       268 t~~K--vv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  268 TNYK--VVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             cceE--EEEeeecc---cceeeEEecCCCceEEEecccceeeee
Confidence            8776  34444333   789999999999999999999987654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-35  Score=228.49  Aligned_cols=240  Identities=25%  Similarity=0.430  Sum_probs=208.7

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc-cCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      +++.|+++.|+  ++|. +|++|..+|.|.|||..+.+.+..+.+ |...|-+++|..   ..+.+|+.|+.|..+|++.
T Consensus       216 ~~~~vtSv~ws--~~G~-~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~  289 (484)
T KOG0305|consen  216 GEELVTSVKWS--PDGS-HLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRI  289 (484)
T ss_pred             CCCceEEEEEC--CCCC-EEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEec
Confidence            37899999998  9999 999999999999999999999999998 999999999974   7899999999999999998


Q ss_pred             CceEEE-eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           86 GICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        86 ~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      .+.... +.   +|...|..++|++ ++.++|+|+.|+.+.|||...                       ..+...+..|
T Consensus       290 ~~~~~~~~~---~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~-----------------------~~p~~~~~~H  342 (484)
T KOG0305|consen  290 SQHVVSTLQ---GHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLS-----------------------PEPKFTFTEH  342 (484)
T ss_pred             chhhhhhhh---cccceeeeeEECC-CCCeeccCCCccceEeccCCC-----------------------ccccEEEecc
Confidence            876655 34   7999999999999 999999999999999999976                       6678899999


Q ss_pred             CCceeeccee---cceEEEee--CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590          165 SNYVDCNRWL---GDFILSKS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  239 (294)
Q Consensus       165 ~~~i~~~~~~---~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~  239 (294)
                      .+.|.+++|+   ..+||+|+  .|+.|++||..++.         .+.... ....|..+.|++..+......|..++.
T Consensus       343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~---------~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~  412 (484)
T KOG0305|consen  343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA---------RIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ  412 (484)
T ss_pred             ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc---------Eecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence            9999999998   78999876  59999999999776         233322 357799999999986333444778899


Q ss_pred             EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |.||+..+.+  ....+.  +|...|..++++|||..+++|+.|.++++|++-+
T Consensus       413 i~lw~~ps~~--~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~  462 (484)
T KOG0305|consen  413 ITLWKYPSMK--LVAELL--GHTSRVLYLALSPDGETIVTGAADETLRFWNLFD  462 (484)
T ss_pred             EEEEeccccc--eeeeec--CCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence            9999998865  333444  8999999999999999999999999999999854

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=4.5e-36  Score=216.56  Aligned_cols=269  Identities=22%  Similarity=0.280  Sum_probs=208.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCC--CceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~i~vwd~   83 (294)
                      .|++-|.++.-+    ++ .+++|+.||.+++||. .|+....+.+|.++|.+++|.-.+  ...|++++.|.++++|.+
T Consensus       103 ~hdDWVSsv~~~----~~-~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  103 LHDDWVSSVKGA----SK-WILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             cchhhhhhhccc----Cc-eEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            577888888875    44 8999999999999996 688889999999999988886522  235999999999999999


Q ss_pred             CCCceEEE-eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccc-ccccce-eecCCCCCCCCceeeeceEE
Q 022590           84 QTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT-YVEKSF-TWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        84 ~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~  160 (294)
                      +.++.... .....||...|.++...+ ++..+++|+.|.+|.+|+...... ..+..- ..............+.|+..
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence            87764322 222338999999999999 999999999999999999333111 111110 01111112233444678899


Q ss_pred             eecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590          161 ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  239 (294)
Q Consensus       161 ~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~  239 (294)
                      +.+|..+|.++.|+ ...+++++.|.+|+.||+.++..         ...+.. ...+.++..+|..  .+|++|+.|..
T Consensus       256 l~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~---------~~~~~~-~ksl~~i~~~~~~--~Ll~~gssdr~  323 (423)
T KOG0313|consen  256 LEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL---------KSTLTT-NKSLNCISYSPLS--KLLASGSSDRH  323 (423)
T ss_pred             ecccccceeeEEEcCCCceEeecccceEEEEEeecccc---------eeeeec-CcceeEeeccccc--ceeeecCCCCc
Confidence            99999999999998 77899999999999999998763         333332 4568889999977  69999999999


Q ss_pred             EEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecCCC
Q 022590          240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIPT  294 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~~  294 (294)
                      |++||.+++.. ........+|.+.|.++.|+|.. ..|++|+.|+++++||++++
T Consensus       324 irl~DPR~~~g-s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  324 IRLWDPRTGDG-SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             eeecCCCCCCC-ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence            99999998753 23333445899999999999965 46788999999999999864

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-34  Score=201.93  Aligned_cols=247  Identities=15%  Similarity=0.238  Sum_probs=200.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC--CCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK--DESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~   83 (294)
                      +-...|+++.|+  ++|. ++++++.|.+++|||..+++.++++..+.-.|..++|.. ....++.++.  |.+||..++
T Consensus        12 ~~~~~i~sl~fs--~~G~-~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen   12 ETNGKINSLDFS--DDGL-LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             cCCCceeEEEec--CCCC-EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEe
Confidence            456889999998  9999 899999999999999999999999998888999999987 4555555555  899999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .+.+.++.|.   ||...|++|+.+| .+..+++++.|++|++||++.                       ......+..
T Consensus        88 ~dNkylRYF~---GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~-----------------------~~cqg~l~~  140 (311)
T KOG1446|consen   88 HDNKYLRYFP---GHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRV-----------------------KKCQGLLNL  140 (311)
T ss_pred             ecCceEEEcC---CCCceEEEEEecC-CCCeEEecccCCeEEeeEecC-----------------------CCCceEEec
Confidence            9999999999   8999999999999 778999999999999999997                       233334444


Q ss_pred             CCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee---cCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          164 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       164 ~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      ...++.+....|-++|++.....|++||+|+-...       +...+.   ......+.+.|+|+|+  +++.++..+.+
T Consensus       141 ~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg-------PF~tf~i~~~~~~ew~~l~FS~dGK--~iLlsT~~s~~  211 (311)
T KOG1446|consen  141 SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKG-------PFTTFSITDNDEAEWTDLEFSPDGK--SILLSTNASFI  211 (311)
T ss_pred             CCCcceeECCCCcEEEEecCCCeEEEEEecccCCC-------CceeEccCCCCccceeeeEEcCCCC--EEEEEeCCCcE
Confidence            44555555555888888888889999999976432       222332   3467899999999995  78888899999


Q ss_pred             EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++.|.-++..............-+ ...+|+||++++++|+.||+|.+|++++
T Consensus       212 ~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  212 YLLDAFDGTVKSTFSGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             EEEEccCCcEeeeEeeccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence            999999987544444432222223 6788999999999999999999999875

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=3.2e-34  Score=227.49  Aligned_cols=244  Identities=18%  Similarity=0.280  Sum_probs=181.3

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----------ccc---ceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLH---KSFVGHGDSINEIRTQPLKPSLVVSASKD   75 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~---~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   75 (294)
                      ..|.....+  +++. .+++++.+.....|+...+          +..   ..+.+|.+.|++++|+|.++++|++|+.|
T Consensus        21 ~~i~~~~~~--~d~~-~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D   97 (493)
T PTZ00421         21 LNVTPSTAL--WDCS-NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED   97 (493)
T ss_pred             ecccccccc--CCCC-CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC
Confidence            444444443  5654 4666666666666664332          211   24678999999999999677899999999


Q ss_pred             CcEEEEEcCCCc-------eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590           76 ESVRLWNVQTGI-------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        76 g~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                      ++|++||+.++.       .+..+.   +|...|.+++|+|..+++|++++.|++|++||+++                 
T Consensus        98 gtIkIWdi~~~~~~~~~~~~l~~L~---gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~t-----------------  157 (493)
T PTZ00421         98 GTIMGWGIPEEGLTQNISDPIVHLQ---GHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVER-----------------  157 (493)
T ss_pred             CEEEEEecCCCccccccCcceEEec---CCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCC-----------------
Confidence            999999997653       344455   79999999999995567999999999999999987                 


Q ss_pred             CCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC-eeEEEEccc
Q 022590          149 FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD-IWFIKFSCD  225 (294)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~  225 (294)
                            ......+..|...|.+++|+  +++|++++.|+.|++||+++++         .+..+..|... ...+.|.++
T Consensus       158 ------g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~---------~v~tl~~H~~~~~~~~~w~~~  222 (493)
T PTZ00421        158 ------GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT---------IVSSVEAHASAKSQRCLWAKR  222 (493)
T ss_pred             ------CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc---------EEEEEecCCCCcceEEEEcCC
Confidence                  33456677899999999997  8899999999999999999765         45556666543 446778887


Q ss_pred             CCcceEEEE---cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEecCC
Q 022590          226 FHYNAAAIG---NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAIP  293 (294)
Q Consensus       226 ~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~~  293 (294)
                      +. .++.+|   +.|+.|++||+++...... ... ......+....|++++++|++++ .||.|++||+..
T Consensus       223 ~~-~ivt~G~s~s~Dr~VklWDlr~~~~p~~-~~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        223 KD-LIITLGCSKSQQRQIMLWDTRKMASPYS-TVD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             CC-eEEEEecCCCCCCeEEEEeCCCCCCcee-Eec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            63 334444   3589999999987643221 111 12234566678999999999887 599999999874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.1e-35  Score=210.49  Aligned_cols=245  Identities=20%  Similarity=0.348  Sum_probs=210.1

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +-+|-+.|..++++  +... |+++++.|+.|+.||++..+.++.+.+|-..|.|++.+| .-+.|++|+.|.+++|||+
T Consensus       189 ltGhi~~vr~vavS--~rHp-YlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDi  264 (460)
T KOG0285|consen  189 LTGHIETVRGVAVS--KRHP-YLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDI  264 (460)
T ss_pred             ecchhheeeeeeec--ccCc-eEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccc-cceeEEecCCcceEEEeee
Confidence            44788999999997  6665 999999999999999999999999999999999999999 7789999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      ++...+..+.   +|..+|..+.+.|.+ ..+++|+.|++|++||++.                       ......+..
T Consensus       265 Rtr~~V~~l~---GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~a-----------------------gkt~~tlt~  317 (460)
T KOG0285|consen  265 RTRASVHVLS---GHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRA-----------------------GKTMITLTH  317 (460)
T ss_pred             cccceEEEec---CCCCcceeEEeecCC-CceEEecCCceEEEeeecc-----------------------CceeEeeec
Confidence            9999999998   799999999999945 4599999999999999998                       556778888


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      |...+.+++.+  ...|++++.| .|+-|++..+.         .+..+..|...+++++...|+   ++++|+++|.+.
T Consensus       318 hkksvral~lhP~e~~fASas~d-nik~w~~p~g~---------f~~nlsgh~~iintl~~nsD~---v~~~G~dng~~~  384 (460)
T KOG0285|consen  318 HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGE---------FLQNLSGHNAIINTLSVNSDG---VLVSGGDNGSIM  384 (460)
T ss_pred             ccceeeEEecCCchhhhhccCCc-cceeccCCccc---------hhhccccccceeeeeeeccCc---eEEEcCCceEEE
Confidence            99999999987  4566666655 68999998776         456678888899999999887   899999999999


Q ss_pred             EEeccCCCceeeee-cc---ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          242 VWELQSSPPVLIAR-LS---HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       242 i~d~~~~~~~~~~~-~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +||.+++-..+... ..   .-.....|.+.+|...|..|++|..|.+|++|.-.
T Consensus       385 fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  385 FWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             EEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence            99999875332221 11   11234679999999999999999999999999754

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=5.4e-34  Score=226.20  Aligned_cols=227  Identities=19%  Similarity=0.299  Sum_probs=175.7

Q ss_pred             ccccCceeEEEEEeecC-CCceEEEEeecCCeEEEEEcCCc-------cccceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590            4 VDQKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKD   75 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   75 (294)
                      +..|.+.|++++|+  | +++ +|++|+.||+|++||+.++       +++..+.+|...|.+++|+|...++|++|+.|
T Consensus        71 l~GH~~~V~~v~fs--P~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D  147 (493)
T PTZ00421         71 LLGQEGPIIDVAFN--PFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD  147 (493)
T ss_pred             EeCCCCCEEEEEEc--CCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence            56899999999998  6 666 9999999999999999765       34567889999999999999546799999999


Q ss_pred             CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      ++|++||+.+++.+..+.   +|...|.+++|+| ++.+|++++.|+.|++||+++                       .
T Consensus       148 gtVrIWDl~tg~~~~~l~---~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs-----------------------g  200 (493)
T PTZ00421        148 MVVNVWDVERGKAVEVIK---CHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD-----------------------G  200 (493)
T ss_pred             CEEEEEECCCCeEEEEEc---CCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCC-----------------------C
Confidence            999999999998888777   6999999999999 889999999999999999998                       3


Q ss_pred             eceEEeecCCCce-eeccee--cceEEEee----CCCeEEEecCCCCCCCCCCCCceeeeeeecC-CCCeeEEEEcccCC
Q 022590          156 FPVFIASVHSNYV-DCNRWL--GDFILSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFH  227 (294)
Q Consensus       156 ~~~~~~~~~~~~i-~~~~~~--~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~  227 (294)
                      ..+..+..|.... ..+.|.  ++.+++++    .|+.|++||+++...        .+.....+ ...+....|++++ 
T Consensus       201 ~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--------p~~~~~~d~~~~~~~~~~d~d~-  271 (493)
T PTZ00421        201 TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--------PYSTVDLDQSSALFIPFFDEDT-  271 (493)
T ss_pred             cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--------ceeEeccCCCCceEEEEEcCCC-
Confidence            3445566676543 344554  45666544    478999999986542        22222222 2345556788888 


Q ss_pred             cceEEEEc-CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590          228 YNAAAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD  273 (294)
Q Consensus       228 ~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (294)
                       .++++++ .|+.|++||+.+++.......   .+..++..++|.|.
T Consensus       272 -~~L~lggkgDg~Iriwdl~~~~~~~~~~~---~s~~~~~g~~~~pk  314 (493)
T PTZ00421        272 -NLLYIGSKGEGNIRCFELMNERLTFCSSY---SSVEPHKGLCMMPK  314 (493)
T ss_pred             -CEEEEEEeCCCeEEEEEeeCCceEEEeec---cCCCCCcceEeccc
Confidence             4676666 599999999998874443322   34467888888885

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=1.1e-33  Score=225.58  Aligned_cols=225  Identities=19%  Similarity=0.367  Sum_probs=171.5

Q ss_pred             eecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc--------eEEEeeccCCCCC
Q 022590           29 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI--------CILIFAGAGGHRN  100 (294)
Q Consensus        29 ~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~~~  100 (294)
                      |+.++.|++|+......+..+.+|.++|.+++|+|.++.+|++|+.||+|++||+.++.        .+..+.   +|..
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~---gH~~  126 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK---GHKK  126 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee---cCCC
Confidence            56678999999887778888999999999999999557899999999999999997642        223344   7999


Q ss_pred             ceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceE
Q 022590          101 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI  178 (294)
Q Consensus       101 ~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  178 (294)
                      .|.+++|+|....+|++++.|++|++||+++.                       .....+. |...|.+++|+  |.+|
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg-----------------------~~~~~i~-~~~~V~SlswspdG~lL  182 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENE-----------------------KRAFQIN-MPKKLSSLKWNIKGNLL  182 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCC-----------------------cEEEEEe-cCCcEEEEEECCCCCEE
Confidence            99999999944456789999999999999973                       2222333 55779999997  8899


Q ss_pred             EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE-----EEcccCCcceEEEEcCC----CeEEEEeccC-C
Q 022590          179 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI-----KFSCDFHYNAAAIGNRE----GKIFVWELQS-S  248 (294)
Q Consensus       179 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~l~~~~~d----g~i~i~d~~~-~  248 (294)
                      ++++.|+.|++||+++++         .+..+..|...+...     .|++++  .++++++.+    +.|++||++. .
T Consensus       183 at~s~D~~IrIwD~Rsg~---------~i~tl~gH~g~~~s~~v~~~~fs~d~--~~IlTtG~d~~~~R~VkLWDlr~~~  251 (568)
T PTZ00420        183 SGTCVGKHMHIIDPRKQE---------IASSFHIHDGGKNTKNIWIDGLGGDD--NYILSTGFSKNNMREMKLWDLKNTT  251 (568)
T ss_pred             EEEecCCEEEEEECCCCc---------EEEEEecccCCceeEEEEeeeEcCCC--CEEEEEEcCCCCccEEEEEECCCCC
Confidence            999999999999999765         456677776654332     344666  477776655    3799999996 3


Q ss_pred             CceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +++....+  ..+.+.+......++|.++++|+.|+.|++|++..
T Consensus       252 ~pl~~~~l--d~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~  294 (568)
T PTZ00420        252 SALVTMSI--DNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL  294 (568)
T ss_pred             CceEEEEe--cCCccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence            33333222  24444455555566789999999999999999864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.9e-35  Score=200.72  Aligned_cols=246  Identities=20%  Similarity=0.266  Sum_probs=201.8

Q ss_pred             CceeEEEEEeecCCCceEEEEee-----cCCeEEEEEcCCccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGG-----INGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      ...-+++.|+|--+++..+|++.     ..|++.|.++...+-+..+.  .-.+.+..++|++...+.+++++.||++++
T Consensus         8 gf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl   87 (311)
T KOG0277|consen    8 GFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRL   87 (311)
T ss_pred             CcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEE
Confidence            34557889986556652222222     36899999987555444443  246789999999988889999999999999


Q ss_pred             EEcCC-CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           81 WNVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        81 wd~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      ||+.. ..++..++   +|...|.++.|++..+..+++++-|++|++|+...                       +..+.
T Consensus        88 ~d~~~~s~Pi~~~k---EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-----------------------~~Sv~  141 (311)
T KOG0277|consen   88 FDLTMPSKPIHKFK---EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-----------------------PNSVQ  141 (311)
T ss_pred             eccCCCCcchhHHH---hhhhheEEeccccccceeEEeeccCCceEeecCCC-----------------------CcceE
Confidence            99643 24556666   79999999999998889999999999999999987                       56678


Q ss_pred             EeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          160 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      ++.+|...|....|+   ++.+++++.|+.+++||++...         ....++.|...+.++.|+.-.. +++++|+.
T Consensus       142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g---------k~~~i~ah~~Eil~cdw~ky~~-~vl~Tg~v  211 (311)
T KOG0277|consen  142 TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG---------KFMSIEAHNSEILCCDWSKYNH-NVLATGGV  211 (311)
T ss_pred             eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC---------ceeEEEeccceeEeecccccCC-cEEEecCC
Confidence            899999999999997   8999999999999999998653         3444888888999999998876 79999999


Q ss_pred             CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecC
Q 022590          237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAI  292 (294)
Q Consensus       237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~  292 (294)
                      |+.|+.||+++.+. .+..+.  +|.-.|+.++|||.. ..||+++.|-+++|||.+
T Consensus       212 d~~vr~wDir~~r~-pl~eL~--gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  212 DNLVRGWDIRNLRT-PLFELN--GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             CceEEEEehhhccc-cceeec--CCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence            99999999998763 344444  888999999999964 689999999999999986

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=1.6e-34  Score=229.52  Aligned_cols=238  Identities=23%  Similarity=0.346  Sum_probs=206.4

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +.+|.+.|.++++.   .+..++++|+.|.++++||..++++...+.+|.+.|.++...+   .++++|+.|.+|++|++
T Consensus       245 l~GH~g~V~~l~~~---~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v  318 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFP---SGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDV  318 (537)
T ss_pred             ccCCCCCceeEEEe---cCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEec
Confidence            67999999999994   3334899999999999999999999999999999999999866   67899999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .++..+..+.   +|.++|+++..+   +.++++|+.|++|++||+.+                       ...+..+.+
T Consensus       319 ~n~~~l~l~~---~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~-----------------------~~cl~sl~g  369 (537)
T KOG0274|consen  319 TNGACLNLLR---GHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRT-----------------------GKCLKSLSG  369 (537)
T ss_pred             cCcceEEEec---cccccEEEEEec---CCEEEEEecCceEEEEEhhh-----------------------ceeeeeecC
Confidence            9999999988   699999999995   67899999999999999998                       667889999


Q ss_pred             CCCceeecceec-ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          164 HSNYVDCNRWLG-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       164 ~~~~i~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      |...|.++.+.+ +.+++|+.|+.|++||+++..        .++..+..|..-+..+.+..    ++|++++.||.|++
T Consensus       370 H~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~--------~c~~tl~~h~~~v~~l~~~~----~~Lvs~~aD~~Ik~  437 (537)
T KOG0274|consen  370 HTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR--------KCIHTLQGHTSLVSSLLLRD----NFLVSSSADGTIKL  437 (537)
T ss_pred             CcceEEEEEecCcceEEeeeeccceEeecCCchh--------hhhhhhcCCccccccccccc----ceeEeccccccEEE
Confidence            999999999998 999999999999999999772        26777777777665554432    58999999999999


Q ss_pred             EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ||..+++......-.   |...|..+++.  ...+++++.||.+++||+++
T Consensus       438 WD~~~~~~~~~~~~~---~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  438 WDAEEGECLRTLEGR---HVGGVSALALG--KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             eecccCceeeeeccC---CcccEEEeecC--cceEEEEecCCeeEEEeccc
Confidence            999998754443321   55778888887  45788999999999999975

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.9e-34  Score=222.14  Aligned_cols=255  Identities=18%  Similarity=0.292  Sum_probs=210.6

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      +-.+.|..++|- .|+.+ +||.++..+.+++|+..+..+. .+.+|++.|.++.... ++.+|++|+.|.++++|.++.
T Consensus       321 G~ndEI~Dm~~l-G~e~~-~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~-~g~llat~sKD~svilWr~~~  396 (775)
T KOG0319|consen  321 GYNDEILDMKFL-GPEES-HLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWS-SGDLLATGSKDKSVILWRLNN  396 (775)
T ss_pred             CCchhheeeeec-CCccc-eEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecc-cCcEEEEecCCceEEEEEecC
Confidence            445788999986 35566 9999999999999998877664 8899999999999444 568999999999999999854


Q ss_pred             CceE-EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           86 GICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        86 ~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      +... ..+....+|.+.|.+++++.....+|++++.|+++++|++........              ............|
T Consensus       397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--------------~~~~~~~~t~~aH  462 (775)
T KOG0319|consen  397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--------------PIVLTCRYTERAH  462 (775)
T ss_pred             CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc--------------cceehhhHHHHhh
Confidence            4322 122223389999999999887789999999999999999987211100              0011122355679


Q ss_pred             CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      ...|++++.+  ..++++|+.|.+.++|++....         ....+.+|...++++.|+|..  ..+++++.|++|+|
T Consensus       463 dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~---------l~~vLsGH~RGvw~V~Fs~~d--q~laT~SgD~TvKI  531 (775)
T KOG0319|consen  463 DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR---------LLGVLSGHTRGVWCVSFSKND--QLLATCSGDKTVKI  531 (775)
T ss_pred             cccccceEecCCCceEEecccccceeeecccCce---------EEEEeeCCccceEEEEecccc--ceeEeccCCceEEE
Confidence            9999999987  6799999999999999998443         788999999999999999998  58999999999999


Q ss_pred             EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |.+.+..  +..++.  +|...|..+.|-.+|+.|++++.||.|++|++++
T Consensus       532 W~is~fS--ClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  532 WSISTFS--CLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             EEeccce--eeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            9999986  555665  8999999999999999999999999999999975

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.3e-34  Score=210.25  Aligned_cols=246  Identities=22%  Similarity=0.289  Sum_probs=210.9

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc----c-------------ee-cccCcceEEEEeCCCC
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH----K-------------SF-VGHGDSINEIRTQPLK   65 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----~-------------~~-~~h~~~v~~~~~~~~~   65 (294)
                      +..|.-+|.+++++  |+++ +.++++.+|+|.=|++.+++..    .             .- ++|...+.+++.++ +
T Consensus       138 ~~~H~~s~~~vals--~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~-D  213 (479)
T KOG0299|consen  138 IGKHQLSVTSVALS--PDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS-D  213 (479)
T ss_pred             eccccCcceEEEee--cccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC-C
Confidence            34788999999998  8888 9999999999999999877532    1             11 26888999999999 9


Q ss_pred             CceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590           66 PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL  145 (294)
Q Consensus        66 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  145 (294)
                      +++|++|+.|..|.||+.++.+.+..+.   +|.+.|.+++|-. +.+.+++++.|+++++|++..              
T Consensus       214 gkylatgg~d~~v~Iw~~~t~ehv~~~~---ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~--------------  275 (479)
T KOG0299|consen  214 GKYLATGGRDRHVQIWDCDTLEHVKVFK---GHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQ--------------  275 (479)
T ss_pred             CcEEEecCCCceEEEecCcccchhhccc---ccccceeeeeeec-CccceeeeecCCceEEEehhH--------------
Confidence            9999999999999999999999999988   7999999999997 778899999999999999998              


Q ss_pred             CCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc
Q 022590          146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS  223 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  223 (294)
                               ...+..+.+|++.|..+.-.  +..+-+|+.|+++++|++....          ...+..+...+.+++|-
T Consensus       276 ---------~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees----------qlifrg~~~sidcv~~I  336 (479)
T KOG0299|consen  276 ---------LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES----------QLIFRGGEGSIDCVAFI  336 (479)
T ss_pred             ---------hHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc----------eeeeeCCCCCeeeEEEe
Confidence                     45567888999999999875  5566666799999999995432          23345567789999998


Q ss_pred             ccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCC--------CeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          224 CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS--------PIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       224 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--------~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+.   .+++|+.+|.|.+|++.+.+++......|.....        .|++++..|...++|+|+.+|.|++|.+++
T Consensus       337 n~~---HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~  411 (479)
T KOG0299|consen  337 NDE---HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED  411 (479)
T ss_pred             ccc---ceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence            885   7999999999999999999988888777543333        799999999999999999999999999875

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=4.9e-33  Score=221.89  Aligned_cols=228  Identities=15%  Similarity=0.191  Sum_probs=171.5

Q ss_pred             cccccCceeEEEEEeecCC-CceEEEEeecCCeEEEEEcCCcc--------ccceecccCcceEEEEeCCCCCceEEEee
Q 022590            3 YVDQKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEK--------LHKSFVGHGDSINEIRTQPLKPSLVVSAS   73 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~   73 (294)
                      .+..|.++|.+++|+  |+ +. +||+|+.||+|+|||+.++.        ++..+.+|...|.+++|+|....+|++++
T Consensus        69 ~L~gH~~~V~~lafs--P~~~~-lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         69 KLKGHTSSILDLQFN--PCFSE-ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             EEcCCCCCEEEEEEc--CCCCC-EEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            356899999999998  65 55 99999999999999997642        23467889999999999994444668999


Q ss_pred             CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           74 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        74 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      .|++|++||+++++....+.    |...|.+++|+| ++.+|++++.|+.|++||+++                      
T Consensus       146 ~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rs----------------------  198 (568)
T PTZ00420        146 FDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRK----------------------  198 (568)
T ss_pred             CCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCC----------------------
Confidence            99999999999998777665    667899999999 889999999999999999998                      


Q ss_pred             eeeceEEeecCCCceeecc-----e--ecceEEEeeCCC----eEEEecCCCCCCCCCCCCceeeeee--ecCCCCeeEE
Q 022590          154 VQFPVFIASVHSNYVDCNR-----W--LGDFILSKSVDN----EIVLWEPKMKEQSPGEGTADILQKY--PVPECDIWFI  220 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~-----~--~~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~  220 (294)
                       ...+..+.+|.+.+.+..     |  +++++++++.++    .|+|||++....        ++...  ......+...
T Consensus       199 -g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~--------pl~~~~ld~~~~~L~p~  269 (568)
T PTZ00420        199 -QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS--------ALVTMSIDNASAPLIPH  269 (568)
T ss_pred             -CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC--------ceEEEEecCCccceEEe
Confidence             334556677776543322     2  356888877764    799999996432        22222  2222333333


Q ss_pred             EEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590          221 KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       221 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (294)
                      ...+++  .++++|..|+.|++|++..+.   ...+....+..++.+++|.|..
T Consensus       270 ~D~~tg--~l~lsGkGD~tIr~~e~~~~~---~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        270 YDESTG--LIYLIGKGDGNCRYYQHSLGS---IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             eeCCCC--CEEEEEECCCeEEEEEccCCc---EEeecccccCCCccceEEcccc
Confidence            333344  688999999999999998764   2333333466788999999964

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=194.19  Aligned_cols=265  Identities=20%  Similarity=0.349  Sum_probs=214.3

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce--ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      +.|..+|.+++|+  .+|. .|++|+.|+++.+|+++..+....  ..+|.+.|-.++|+|....++++++.|.+|++||
T Consensus        17 ~~~~~~v~Sv~wn--~~g~-~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   17 QGHVQKVHSVAWN--CDGT-KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             hhhhhcceEEEEc--ccCc-eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4788999999998  7898 999999999999999987765543  4689999999999998899999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCC-------CCC------
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP-------SKF------  149 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-------~~~------  149 (294)
                      ++++++.....    ....=.-+.|+| ++.++++++.|..|...|.++.+...+..+......       ..+      
T Consensus        94 ~r~~k~~~~i~----~~~eni~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl  168 (313)
T KOG1407|consen   94 IRSGKCTARIE----TKGENINITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL  168 (313)
T ss_pred             eccCcEEEEee----ccCcceEEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence            99999999887    445556789999 888999999999999999998554433332221110       000      


Q ss_pred             -----CCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEE
Q 022590          150 -----PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF  222 (294)
Q Consensus       150 -----~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  222 (294)
                           ..-...+|+..+..|+....|+.|+  |++|++|+.|..+.+||+...-         +.+.+.-..-+|..+.|
T Consensus       169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi---------C~R~isRldwpVRTlSF  239 (313)
T KOG1407|consen  169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI---------CERCISRLDWPVRTLSF  239 (313)
T ss_pred             ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhh---------hheeeccccCceEEEEe
Confidence                 0011245678889999999999997  9999999999999999998543         55666667778999999


Q ss_pred             cccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC---------CcEEEEecCC
Q 022590          223 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED---------GAIWRWDAIP  293 (294)
Q Consensus       223 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~vw~~~~  293 (294)
                      +.++  .+||++++|..|-|=+++++...  ..+   .+.++-..++|+|...+||-++.|         |.+++|-+.+
T Consensus       240 S~dg--~~lASaSEDh~IDIA~vetGd~~--~eI---~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~  312 (313)
T KOG1407|consen  240 SHDG--RMLASASEDHFIDIAEVETGDRV--WEI---PCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN  312 (313)
T ss_pred             ccCc--ceeeccCccceEEeEecccCCeE--EEe---eccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence            9999  69999999999999999999743  333   455788999999999999877654         5678776543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=3.3e-33  Score=201.89  Aligned_cols=248  Identities=18%  Similarity=0.302  Sum_probs=200.2

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc----cceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      .+|.++|.+++|....+....+++++.|.++++|..+.+..    ++.-.||...|-+++..+ ++..+++|+.|.+|++
T Consensus       141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-sgtr~~SgS~D~~lki  219 (423)
T KOG0313|consen  141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-SGTRFCSGSWDTMLKI  219 (423)
T ss_pred             ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-CCCeEEeecccceeee
Confidence            48999999999986555544799999999999999877643    333459999999999999 8999999999999999


Q ss_pred             EEcCC-------------------------CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccc
Q 022590           81 WNVQT-------------------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY  135 (294)
Q Consensus        81 wd~~~-------------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  135 (294)
                      |+..+                         +.++..+.   +|..+|.++.|++  ...+++++.|.+|+.||+.++.. 
T Consensus       220 Ws~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~---GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~-  293 (423)
T KOG0313|consen  220 WSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE---GHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGL-  293 (423)
T ss_pred             cccCCCccccccccchhhhhhhhhhhcccccCceEEec---ccccceeeEEEcC--CCceEeecccceEEEEEeecccc-
Confidence            99321                         11222333   8999999999985  66799999999999999998432 


Q ss_pred             cccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC
Q 022590          136 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP  213 (294)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  213 (294)
                                            ...+ ..+..+.++.+.  .++|++|+.|..|++||++++.      .....+.+.+|
T Consensus       294 ----------------------~~~~-~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~------gs~v~~s~~gH  344 (423)
T KOG0313|consen  294 ----------------------KSTL-TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD------GSVVSQSLIGH  344 (423)
T ss_pred             ----------------------eeee-ecCcceeEeecccccceeeecCCCCceeecCCCCCC------CceeEEeeecc
Confidence                                  1111 234556666665  7899999999999999999885      44467888899


Q ss_pred             CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ...|.++.|+|... ..|++|+.|+++++||+++.+. .+..+.  +|...|.++.|. ++.++++|+.|.+|+|+.-.+
T Consensus       345 ~nwVssvkwsp~~~-~~~~S~S~D~t~klWDvRS~k~-plydI~--~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~  419 (423)
T KOG0313|consen  345 KNWVSSVKWSPTNE-FQLVSGSYDNTVKLWDVRSTKA-PLYDIA--GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP  419 (423)
T ss_pred             hhhhhheecCCCCc-eEEEEEecCCeEEEEEeccCCC-cceeec--cCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence            99999999999987 6899999999999999999762 233333  778999999998 456899999999999987543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.5e-34  Score=204.53  Aligned_cols=245  Identities=22%  Similarity=0.387  Sum_probs=205.0

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee--------cccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF--------VGHGDSINEIRTQPLKPSLVVSASKDES   77 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~l~s~~~dg~   77 (294)
                      ..+.-+.|..|+  |||+ +|++|+.||.|.+||..+|+..+.+        ..+..+|.|+.|+. +...|++|+.||.
T Consensus       211 g~KSh~EcA~FS--PDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAsGsqDGk  286 (508)
T KOG0275|consen  211 GQKSHVECARFS--PDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLASGSQDGK  286 (508)
T ss_pred             ccccchhheeeC--CCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-cHHHhhccCcCCc
Confidence            344566777887  9999 9999999999999999999766543        45788999999999 8899999999999


Q ss_pred             EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      |++|.+.+|.+++.|..  .|...|+|+.|+. ++..+++++.|.++++.-+..                       ...
T Consensus       287 IKvWri~tG~ClRrFdr--AHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKS-----------------------GK~  340 (508)
T KOG0275|consen  287 IKVWRIETGQCLRRFDR--AHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKS-----------------------GKC  340 (508)
T ss_pred             EEEEEEecchHHHHhhh--hhccCeeEEEEcc-CcchhhcccccceEEEecccc-----------------------chh
Confidence            99999999999999986  7999999999998 888899999999999999998                       455


Q ss_pred             eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee--cCCCCeeEEEEcccCCcceEEE
Q 022590          158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      +..+.+|...|+...|.  |..+++++.||+|++|+..+.++.         ..+.  ....+|..+..-|... ..+++
T Consensus       341 LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~---------~Tfk~~~~d~~vnsv~~~PKnp-eh~iV  410 (508)
T KOG0275|consen  341 LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL---------STFKPLGTDYPVNSVILLPKNP-EHFIV  410 (508)
T ss_pred             HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhh---------hhccCCCCcccceeEEEcCCCC-ceEEE
Confidence            67789999999999996  999999999999999999987642         2222  2345677887777765 67888


Q ss_pred             EcCCCeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          234 GNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +...+++++.++...   .+..+. .....+...+.+.+|.|.++.+.++|+.++.|.+.+
T Consensus       411 CNrsntv~imn~qGQ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~s  468 (508)
T KOG0275|consen  411 CNRSNTVYIMNMQGQ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLS  468 (508)
T ss_pred             EcCCCeEEEEeccce---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeec
Confidence            888999999998765   333333 223345677889999999999999999999988643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.2e-33  Score=197.40  Aligned_cols=238  Identities=18%  Similarity=0.298  Sum_probs=189.0

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCc--eEEEeeCCCcEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS--LVVSASKDESVRLW   81 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i~vw   81 (294)
                      ...|.++|++++.+    |. ++|+|+.|-+|+|||+.+.+.+..+-.|.+.|+++.|.+ ...  .|++|+.||.|.+|
T Consensus        39 ~~aH~~sitavAVs----~~-~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   39 FSAHAGSITALAVS----GP-YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             ccccccceeEEEec----ce-eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEE
Confidence            35899999999985    76 999999999999999999999999999999999999998 443  89999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      +.....++..++   +|.+.|+.++.+| .+.+.++.+.|+.+++|++-.++.....                     .+
T Consensus       113 ~~~~W~~~~slK---~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~---------------------~L  167 (362)
T KOG0294|consen  113 RVGSWELLKSLK---AHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVL---------------------NL  167 (362)
T ss_pred             EcCCeEEeeeec---ccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceee---------------------cc
Confidence            999999998888   7999999999999 9999999999999999999885422111                     11


Q ss_pred             ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590          162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  239 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~  239 (294)
                       .+..  ..+.|+  |++++.++. ..|-+|.+.+..         .......+ ..+.++.|-..   ..|++|..++.
T Consensus       168 -~~~a--t~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~---------v~~~i~~~-~r~l~~~~l~~---~~L~vG~d~~~  230 (362)
T KOG0294|consen  168 -KNKA--TLVSWSPQGDHFVVSGR-NKIDIYQLDNAS---------VFREIENP-KRILCATFLDG---SELLVGGDNEW  230 (362)
T ss_pred             -CCcc--eeeEEcCCCCEEEEEec-cEEEEEecccHh---------Hhhhhhcc-ccceeeeecCC---ceEEEecCCce
Confidence             1222  226665  888888765 468899887544         22222222 33444444433   48999999999


Q ss_pred             EEEEeccCCCceeeeeccccccCCCeEEEEE--ccCCCEEEEeccCCcEEEEecCC
Q 022590          240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAM--SYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |.+||..+..+.  ..+.  +|...|.++.+  .|++.+|+|+|.||.|+|||++.
T Consensus       231 i~~~D~ds~~~~--~~~~--AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  231 ISLKDTDSDTPL--TEFL--AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             EEEeccCCCccc--eeee--cchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence            999999986533  3333  88899999984  46788999999999999999875

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=4.1e-33  Score=195.78  Aligned_cols=244  Identities=18%  Similarity=0.273  Sum_probs=189.4

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-cccc-ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      ..++.|.+|+|++..+  +++++|+.||+||+|+++. +..+ +....|.++|.+++|+. ++..+++|+.|+.+++||+
T Consensus        25 pP~DsIS~l~FSP~~~--~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   25 PPEDSISALAFSPQAD--NLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             CcccchheeEeccccC--ceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEEc
Confidence            4578999999995333  3888999999999999976 3332 44567999999999999 8899999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCc--eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      .+++.... .   .|.++|.++.|-+ ...  .|+||+.|.+|+.||.|.                       ..++..+
T Consensus       102 ~S~Q~~~v-~---~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~-----------------------~~pv~t~  153 (347)
T KOG0647|consen  102 ASGQVSQV-A---AHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRS-----------------------SNPVATL  153 (347)
T ss_pred             cCCCeeee-e---ecccceeEEEEec-CCCcceeEecccccceeecccCC-----------------------CCeeeee
Confidence            99965544 4   4999999999987 544  899999999999999998                       3334333


Q ss_pred             ecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          162 SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       162 ~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      . -+..+.++..-..+++++..++.|.+|+++.+......       ....-.-.+.+++..++.+  -.+.|+.+|.+.
T Consensus       154 ~-LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~-------~~SpLk~Q~R~va~f~d~~--~~alGsiEGrv~  223 (347)
T KOG0647|consen  154 Q-LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKR-------IESPLKWQTRCVACFQDKD--GFALGSIEGRVA  223 (347)
T ss_pred             e-ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhh-------hcCcccceeeEEEEEecCC--ceEeeeecceEE
Confidence            3 34566666666788999999999999999876421110       0011234577888888885  458899999999


Q ss_pred             EEeccCCCceeeeecccccc---------CCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          242 VWELQSSPPVLIARLSHAQS---------KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +..+....+.....++  -|         -..|++++|+|.-..|+|++.||+..+||-.
T Consensus       224 iq~id~~~~~~nFtFk--CHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFK--CHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             EEecCCCCccCceeEE--EeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence            9999886443333333  22         2368999999999999999999999999964

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=6.7e-35  Score=212.69  Aligned_cols=248  Identities=21%  Similarity=0.318  Sum_probs=204.6

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      .++.|++.+..+.|-  ++.. .|++|+.|..|++|+....+  .+.++.+..++|+++.|.+ ++..+++++.|+.+++
T Consensus       170 ~ld~h~gev~~v~~l--~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFL--RNSD-TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRL  245 (459)
T ss_pred             hhhccccccceeEEc--cCcc-hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecC-CCceEEeecCCCceee
Confidence            357899999999997  5545 79999999999999987766  7788888899999999999 8889999999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      |++.+.+...++.   +|++.|+++.|.. ....+++|+.|.+|+.||+......                       . 
T Consensus       246 Wnvd~~r~~~TLs---GHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~-----------------------k-  297 (459)
T KOG0288|consen  246 WNVDSLRLRHTLS---GHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCS-----------------------K-  297 (459)
T ss_pred             eeccchhhhhhhc---ccccceeeehhhc-cccceeeccccchhhhhhhhhhhee-----------------------c-
Confidence            9999999999888   7999999999987 5556999999999999999973211                       0 


Q ss_pred             eecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          161 ASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       161 ~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      .......+..+...+..+++|..|++|++||.++..         .....+.+. .|+++..++++  ..+.+.+.|..+
T Consensus       298 t~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~---------~~~sv~~gg-~vtSl~ls~~g--~~lLsssRDdtl  365 (459)
T KOG0288|consen  298 TVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSAD---------KTRSVPLGG-RVTSLDLSMDG--LELLSSSRDDTL  365 (459)
T ss_pred             cccccccccceEecceeeeecccccceEEEeccCCc---------eeeEeecCc-ceeeEeeccCC--eEEeeecCCCce
Confidence            011122333444446788899999999999999765         566666654 89999999999  578888999999


Q ss_pred             EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCCC
Q 022590          241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT  294 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  294 (294)
                      .++|+++.+................+.+.|||++.|+++||.||.|+||++.++
T Consensus       366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg  419 (459)
T KOG0288|consen  366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG  419 (459)
T ss_pred             eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence            999999987665555543333455899999999999999999999999998753

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.7e-33  Score=197.11  Aligned_cols=244  Identities=17%  Similarity=0.262  Sum_probs=192.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      ..++.|+++.|+  |.+. .|++++.||++++|+.....+...++ |..++.+++|.+  ...+++|+.||.|+.+|+.+
T Consensus        11 pP~d~IS~v~f~--~~~~-~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~   84 (323)
T KOG1036|consen   11 PPEDGISSVKFS--PSSS-DLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNT   84 (323)
T ss_pred             CChhceeeEEEc--CcCC-cEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC--CceEEEeccCceEEEEEecC
Confidence            457899999998  6666 78888899999999999887666666 899999999996  56799999999999999998


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      +.....-.    |..+|.||.+++ ....+++|+.|++|++||.+.                       ......+. ..
T Consensus        85 ~~~~~igt----h~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~-----------------------~~~~~~~d-~~  135 (323)
T KOG1036|consen   85 GNEDQIGT----HDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRN-----------------------KVVVGTFD-QG  135 (323)
T ss_pred             Ccceeecc----CCCceEEEEeec-cCCeEEEcccCccEEEEeccc-----------------------cccccccc-cC
Confidence            87665544    999999999998 777899999999999999996                       11222222 33


Q ss_pred             CceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          166 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       166 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      ..|.++...++.|++|+.+..+.+||+++.......       ....-+-.+.++++-|++.  -.++++-||.|.+=.+
T Consensus       136 kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~-------reS~lkyqtR~v~~~pn~e--Gy~~sSieGRVavE~~  206 (323)
T KOG1036|consen  136 KKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQR-------RESSLKYQTRCVALVPNGE--GYVVSSIEGRVAVEYF  206 (323)
T ss_pred             ceEEEEeccCCEEEEeecCceEEEEEcccccchhhh-------ccccceeEEEEEEEecCCC--ceEEEeecceEEEEcc
Confidence            488888888999999999999999999987642211       1112234678899999664  4788899999988777


Q ss_pred             cCCCceeeeeccccccC---------CCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          246 QSSPPVLIARLSHAQSK---------SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       246 ~~~~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +..+.....++....|.         .||++++|+|-.+.||||+.||.|.+||+.+
T Consensus       207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~  263 (323)
T KOG1036|consen  207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFN  263 (323)
T ss_pred             CCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcc
Confidence            66533333333322332         4899999999999999999999999999864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-33  Score=209.76  Aligned_cols=241  Identities=15%  Similarity=0.269  Sum_probs=198.9

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~   86 (294)
                      ...+|.+++|++.....  +|+.+. -.+.||+..+....+++....+.|.++.|-. ||.+|++|...|.|+|+|+.+.
T Consensus        25 e~~~vssl~fsp~~P~d--~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r  100 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYD--FAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSR  100 (487)
T ss_pred             ccCcceeEecCCCCCCc--eEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeec-CCeEEEccCCcCcEEEeccccH
Confidence            34689999999532232  444443 4799999999988888888899999999998 9999999999999999997765


Q ss_pred             ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590           87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  166 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (294)
                      ..+..+.   +|+.++..+.|+|.++..|++|+.|+.+++||+.+                       ......+.+|.+
T Consensus       101 ~iLR~~~---ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-----------------------a~v~~~l~~htD  154 (487)
T KOG0310|consen  101 VILRQLY---AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-----------------------AYVQAELSGHTD  154 (487)
T ss_pred             HHHHHHh---hccCceeEEEecccCCeEEEecCCCceEEEEEcCC-----------------------cEEEEEecCCcc
Confidence            6666666   79999999999999999999999999999999998                       333557889999


Q ss_pred             ceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590          167 YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       167 ~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~  243 (294)
                      .|.|.+++   +.++++|+.||.|++||++....        .+.++ .|..+|..+.+-|.|  ..+++++ .+.+++|
T Consensus       155 YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~--------~v~el-nhg~pVe~vl~lpsg--s~iasAg-Gn~vkVW  222 (487)
T KOG0310|consen  155 YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS--------RVVEL-NHGCPVESVLALPSG--SLIASAG-GNSVKVW  222 (487)
T ss_pred             eeEeeccccCCCeEEEecCCCceEEEEEeccCCc--------eeEEe-cCCCceeeEEEcCCC--CEEEEcC-CCeEEEE
Confidence            99999997   55899999999999999997531        33333 467899999999998  3666655 4679999


Q ss_pred             eccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |+.++........   .|...|+|+++..++..|++|+-|+.+++||+.
T Consensus       223 Dl~~G~qll~~~~---~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t  268 (487)
T KOG0310|consen  223 DLTTGGQLLTSMF---NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTT  268 (487)
T ss_pred             EecCCceehhhhh---cccceEEEEEeecCCceEeecccccceEEEEcc
Confidence            9997753332222   477899999999999999999999999999964

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=9.3e-34  Score=200.14  Aligned_cols=254  Identities=16%  Similarity=0.305  Sum_probs=205.0

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc------------------cccceecccCcceEEEEeCC
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE------------------KLHKSFVGHGDSINEIRTQP   63 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------------------~~~~~~~~h~~~v~~~~~~~   63 (294)
                      +|+..|+.+..+-+|+  |||. ++|+|+.|..|+|.|++..                  -.++++..|.++|+++.|+|
T Consensus       106 ~ylt~HK~~cR~aafs--~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFS--PDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             EEEeecccceeeeeeC--CCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            5778999999999998  9999 9999999999999998621                  24567788999999999999


Q ss_pred             CCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeec
Q 022590           64 LKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT  143 (294)
Q Consensus        64 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  143 (294)
                       ....|++|+.|++|+++|+......+.++.+ ....+|.+|.|+| .|.+|++|..-.++++||+.+.+...       
T Consensus       183 -re~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~Qcfv-------  252 (430)
T KOG0640|consen  183 -RETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFV-------  252 (430)
T ss_pred             -hhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEee-------
Confidence             8899999999999999999765444433322 2567899999999 99999999999999999999843321       


Q ss_pred             CCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee-c-CCCCeeE
Q 022590          144 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP-V-PECDIWF  219 (294)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~  219 (294)
                                   +...-..|.+.|+++.++  +++.++++.||.|++||--+.+         ++..+. . ....|.+
T Consensus       253 -------------sanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r---------Cv~t~~~AH~gsevcS  310 (430)
T KOG0640|consen  253 -------------SANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR---------CVRTIGNAHGGSEVCS  310 (430)
T ss_pred             -------------ecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH---------HHHHHHhhcCCceeee
Confidence                         111335689999999997  8899999999999999987655         333332 2 2357899


Q ss_pred             EEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc------------------------------------------
Q 022590          220 IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS------------------------------------------  257 (294)
Q Consensus       220 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------------------------  257 (294)
                      ..|..++  .++++.+.|..+++|.+.++..+....-.                                          
T Consensus       311 a~Ftkn~--kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~  388 (430)
T KOG0640|consen  311 AVFTKNG--KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV  388 (430)
T ss_pred             EEEccCC--eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence            9999999  58999999999999999876533221110                                          


Q ss_pred             ---ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          258 ---HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       258 ---~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                         ..+|.+.++.+.-||.+.-+++++.|-.+++|--+
T Consensus       389 ~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  389 ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence               12467889999999999999999999999999765

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.8e-34  Score=193.29  Aligned_cols=255  Identities=17%  Similarity=0.237  Sum_probs=200.8

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---cccceecccCcceEEEEeC-CCCCceEEEeeCCCcEEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQ-PLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~-~~~~~~l~s~~~dg~i~vw   81 (294)
                      +|++-|..+...  --|+ .||+++.|++|+|+...+.   +++.++.+|.+||..++|. |--+.+||+++.||.|.||
T Consensus         9 ~H~D~IHda~lD--yygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW   85 (299)
T KOG1332|consen    9 QHEDMIHDAQLD--YYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW   85 (299)
T ss_pred             hhhhhhhHhhhh--hhcc-eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence            899999988887  4577 9999999999999999764   4678899999999999994 5458899999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCC-CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      .-.+++-. .......|...|++++|.|.+ +..|++++.||.|.+.+.+....                    ......
T Consensus        86 ke~~g~w~-k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~--------------------w~t~ki  144 (299)
T KOG1332|consen   86 KEENGRWT-KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG--------------------WTTSKI  144 (299)
T ss_pred             ecCCCchh-hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC--------------------ccchhh
Confidence            98877432 222233699999999999944 57789999999999999987311                    112234


Q ss_pred             eecCCCceeeccee-----c-----------ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590          161 ASVHSNYVDCNRWL-----G-----------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  224 (294)
Q Consensus       161 ~~~~~~~i~~~~~~-----~-----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (294)
                      ...|+-.|++++|.     |           ..|++|+.|..|+||+....+       ...-+.+..|...++.++|+|
T Consensus       145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-------w~~e~~l~~H~dwVRDVAwaP  217 (299)
T KOG1332|consen  145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-------WKLERTLEGHKDWVRDVAWAP  217 (299)
T ss_pred             hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc-------hhhhhhhhhcchhhhhhhhcc
Confidence            56688888888885     2           469999999999999998762       223344788999999999999


Q ss_pred             cCC--cceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          225 DFH--YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       225 ~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .-.  ...+++++.||.+.||-.+........++-. .....+..+.||+.|+.|+.++.|+.|.+|.-.
T Consensus       218 ~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~-~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  218 SVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE-EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ccCCCceeeEEecCCCcEEEEEecCccCcccccccc-cCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            752  2579999999999999887442222222221 344679999999999999999999999999643

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=201.77  Aligned_cols=248  Identities=17%  Similarity=0.233  Sum_probs=210.1

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      ..+++|...|+.+.++  |+.. .+++++.|-.|+||.............|.++|+.+..+| .+.||++++.||+..+.
T Consensus       255 ~~~~Gh~kki~~v~~~--~~~~-~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fs  330 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFH--KDLD-TVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHP-TGEYLLSASNDGTWAFS  330 (506)
T ss_pred             hhccCcceEEEEEEec--cchh-heeecCCcceEEeeccccccCccccccccccceeeeecc-CCcEEEEecCCceEEEE
Confidence            4567999999999997  7777 899999999999999988888888899999999999999 99999999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      |++++..+...... ...-.+++.+|+| ++.+|.+|..||.+++||+..                       +..+..+
T Consensus       331 d~~~g~~lt~vs~~-~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks-----------------------~~~~a~F  385 (506)
T KOG0289|consen  331 DISSGSQLTVVSDE-TSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS-----------------------QTNVAKF  385 (506)
T ss_pred             EccCCcEEEEEeec-cccceeEEeeEcC-CceEEeccCCCceEEEEEcCC-----------------------ccccccC
Confidence            99999988877621 1224589999999 999999999999999999998                       4567788


Q ss_pred             ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC-CCeeEEEEcccCCcceEEEEcCCC
Q 022590          162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      .+|.++|..++|+  |-+|++++.|+.|++||+|..+         .+..+...+ .++.++.|.+.|  .+|+.++.+=
T Consensus       386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---------n~kt~~l~~~~~v~s~~fD~SG--t~L~~~g~~l  454 (506)
T KOG0289|consen  386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---------NFKTIQLDEKKEVNSLSFDQSG--TYLGIAGSDL  454 (506)
T ss_pred             CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---------ccceeeccccccceeEEEcCCC--CeEEeeccee
Confidence            8999999999997  7899999999999999999765         233444332 368899999998  5888888777


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      .|++++-.+.+......+.  .|.+..+.+.|....++++++|.|..++++.+
T Consensus       455 ~Vy~~~k~~k~W~~~~~~~--~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  455 QVYICKKKTKSWTEIKELA--DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEEEEecccccceeeehhh--hcccccceeeecccceEEeeccchhheEEeec
Confidence            7777776665544444444  67788999999999999999999999998865

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.4e-33  Score=206.44  Aligned_cols=247  Identities=22%  Similarity=0.314  Sum_probs=198.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .|...|.+++.+  +||+ |||+|+.|..|.||+.++.+.++.+++|.+.|.+++|-. +...|++++.|++|++|+++.
T Consensus       200 ~h~keil~~avS--~Dgk-ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  200 GHVKEILTLAVS--SDGK-YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             cccceeEEEEEc--CCCc-EEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhH
Confidence            688899999998  9999 999999999999999999999999999999999999998 888999999999999999998


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ...+.++.   +|.+.|.+|.-.. .+..+-+|+.|+++++|++..                        .....+.++.
T Consensus       276 ~s~vetly---GHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~e------------------------esqlifrg~~  327 (479)
T KOG0299|consen  276 LSYVETLY---GHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPE------------------------ESQLIFRGGE  327 (479)
T ss_pred             hHHHHHHh---CCccceeeechhc-ccceEEeccccceeEEEeccc------------------------cceeeeeCCC
Confidence            88777777   7999999999886 667667777999999999964                        2345677889


Q ss_pred             Cceeecce-ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee-e--cCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          166 NYVDCNRW-LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-P--VPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       166 ~~i~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      +.+.|++| +...|++|+.+|.|.+|++...+..........+... .  .....|++++..|..  +++++|+.+|.|+
T Consensus       328 ~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s--dL~asGS~~G~vr  405 (479)
T KOG0299|consen  328 GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS--DLLASGSWSGCVR  405 (479)
T ss_pred             CCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC--ceEEecCCCCceE
Confidence            99999999 4899999999999999999877643222111111111 0  111378899999988  6999999999999


Q ss_pred             EEeccCCC--ceeeeeccccccCCCeEEEEEccCCCEEEEe-ccCCcEEEE
Q 022590          242 VWELQSSP--PVLIARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRW  289 (294)
Q Consensus       242 i~d~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vw  289 (294)
                      +|.+..+-  ......++   -.+.|++++|+++|+++++| +..-.+--|
T Consensus       406 LW~i~~g~r~i~~l~~ls---~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  406 LWKIEDGLRAINLLYSLS---LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             EEEecCCccccceeeecc---cccEEEEEEEccCCCEEEEeccccccccee
Confidence            99998872  22223332   34779999999999976665 444444333

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=5.3e-33  Score=220.95  Aligned_cols=235  Identities=23%  Similarity=0.426  Sum_probs=205.4

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce-ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      +...+.+..|.   ++  ++++++.+++|++|+..++..+.. +.+|.+.|.++++.. .+.+|++|+.|.++++||..+
T Consensus       207 ~~~~~~~~q~~---~~--~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH---DG--FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST  280 (537)
T ss_pred             Ccchhhhheee---cC--eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC
Confidence            56677888885   44  799999999999999999998888 999999999999987 789999999999999999999


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      |++...+.   +|.+.|.++...+   ..+++|+.|.+|++|++.+                       ...+..+.+|.
T Consensus       281 g~C~~~l~---gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n-----------------------~~~l~l~~~h~  331 (537)
T KOG0274|consen  281 GECTHSLQ---GHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTN-----------------------GACLNLLRGHT  331 (537)
T ss_pred             CcEEEEec---CCCceEEEEEccC---ceEeeccCCceEEEEeccC-----------------------cceEEEecccc
Confidence            99999999   7999999999854   6788899999999999997                       55566777799


Q ss_pred             CceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          166 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       166 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      .+|.++..+++++++|+.|++|++||+.+++         ++..+.+|...|+++.+.+.   ..+++|+.|+.|++||+
T Consensus       332 ~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~---------cl~sl~gH~~~V~sl~~~~~---~~~~Sgs~D~~IkvWdl  399 (537)
T KOG0274|consen  332 GPVNCVQLDEPLLVSGSYDGTVKVWDPRTGK---------CLKSLSGHTGRVYSLIVDSE---NRLLSGSLDTTIKVWDL  399 (537)
T ss_pred             ccEEEEEecCCEEEEEecCceEEEEEhhhce---------eeeeecCCcceEEEEEecCc---ceEEeeeeccceEeecC
Confidence            9999999999999999999999999999665         78999999999999988775   37999999999999999


Q ss_pred             cCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          246 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++.. .....+.  +|..-+..+.+  .+++|++++.||.|++||.++
T Consensus       400 ~~~~-~c~~tl~--~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~  442 (537)
T KOG0274|consen  400 RTKR-KCIHTLQ--GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEE  442 (537)
T ss_pred             Cchh-hhhhhhc--CCccccccccc--ccceeEeccccccEEEeeccc
Confidence            9983 1333443  66677755554  567999999999999999864

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.1e-34  Score=205.05  Aligned_cols=250  Identities=15%  Similarity=0.263  Sum_probs=197.2

Q ss_pred             CCcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            1 MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         1 ~~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      ++.|+.|.+.|+|++=.  |..-..+++|+.||.|+|||+.+..+..+++.|.+.|..|++..   ..+++++.|.+|+.
T Consensus        59 v~~L~gHrdGV~~lakh--p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKH--PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ  133 (433)
T ss_pred             hhhccccccccchhhcC--cchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceee
Confidence            35678999999999976  65533799999999999999999999999999999999999976   56889999999999


Q ss_pred             EEcCC---------------------------CceEEEeec--------cCCCCCceeEEEEecCCCceEEeeecCCcEE
Q 022590           81 WNVQT---------------------------GICILIFAG--------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVK  125 (294)
Q Consensus        81 wd~~~---------------------------~~~~~~~~~--------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~  125 (294)
                      |.++-                           |+.+..+..        +.--...|.++.|+|....+|++|+.|+.|.
T Consensus       134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv  213 (433)
T KOG0268|consen  134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV  213 (433)
T ss_pred             eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence            97432                           111111111        0012345788889998888999999999999


Q ss_pred             EEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCC
Q 022590          126 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT  203 (294)
Q Consensus       126 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  203 (294)
                      +||+++..                       |+.... -...-+.++|+  +-.|+++..|..++.||++..+.      
T Consensus       214 LyD~R~~~-----------------------Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~------  263 (433)
T KOG0268|consen  214 LYDLRQAS-----------------------PLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR------  263 (433)
T ss_pred             EEecccCC-----------------------ccceee-eeccccceecCccccceeeccccccceehhhhhhcc------
Confidence            99999832                       222211 12234567777  55788999999999999998654      


Q ss_pred             ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590          204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED  283 (294)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  283 (294)
                        ++..+..|...+..+.|+|.|  .-+++|+.|.+|+||..+.+....   ..+......|.++.||.|.+|+++||.|
T Consensus       264 --p~~v~~dhvsAV~dVdfsptG--~EfvsgsyDksIRIf~~~~~~SRd---iYhtkRMq~V~~Vk~S~Dskyi~SGSdd  336 (433)
T KOG0268|consen  264 --PLNVHKDHVSAVMDVDFSPTG--QEFVSGSYDKSIRIFPVNHGHSRD---IYHTKRMQHVFCVKYSMDSKYIISGSDD  336 (433)
T ss_pred             --cchhhcccceeEEEeccCCCc--chhccccccceEEEeecCCCcchh---hhhHhhhheeeEEEEeccccEEEecCCC
Confidence              677788888999999999999  579999999999999999875332   2233445679999999999999999999


Q ss_pred             CcEEEEecC
Q 022590          284 GAIWRWDAI  292 (294)
Q Consensus       284 g~i~vw~~~  292 (294)
                      +.|++|...
T Consensus       337 ~nvRlWka~  345 (433)
T KOG0268|consen  337 GNVRLWKAK  345 (433)
T ss_pred             cceeeeecc
Confidence            999999754

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=2.3e-33  Score=204.69  Aligned_cols=239  Identities=21%  Similarity=0.341  Sum_probs=197.6

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      |.+..++|++++|.  +++. ++++++.|+.+++|+++..+...++.+|++.|+++.|.. ....+++|+.|.+|++||+
T Consensus       215 LaGs~g~it~~d~d--~~~~-~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl  290 (459)
T KOG0288|consen  215 LAGSLGNITSIDFD--SDNK-HVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDL  290 (459)
T ss_pred             hhccCCCcceeeec--CCCc-eEEeecCCCceeeeeccchhhhhhhcccccceeeehhhc-cccceeeccccchhhhhhh
Confidence            44566789999997  8888 899999999999999999999999999999999999998 5555999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      ....+...+-    ....+.+|..+   ...+++|..|++|++||++.                       ..+......
T Consensus       291 ~k~~C~kt~l----~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs-----------------------~~~~~sv~~  340 (459)
T KOG0288|consen  291 QKAYCSKTVL----PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRS-----------------------ADKTRSVPL  340 (459)
T ss_pred             hhhheecccc----ccccccceEec---ceeeeecccccceEEEeccC-----------------------CceeeEeec
Confidence            9988887765    55667777775   46699999999999999998                       334445555


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC----CCCeeEEEEcccCCcceEEEEcCC
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      +. .|+++..+  +..+.+++.|.++.+.|+++.+         ....+...    ....+.+.|||++  .|+++|+.|
T Consensus       341 gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e---------I~~~~sA~g~k~asDwtrvvfSpd~--~YvaAGS~d  408 (459)
T KOG0288|consen  341 GG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE---------IRQTFSAEGFKCASDWTRVVFSPDG--SYVAAGSAD  408 (459)
T ss_pred             Cc-ceeeEeeccCCeEEeeecCCCceeeeeccccc---------EEEEeeccccccccccceeEECCCC--ceeeeccCC
Confidence            54 78877665  8889999999999999999775         23333322    2458889999999  699999999


Q ss_pred             CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      |.|+||++.+++........  .....|++++|+|.|..|++++.++.+.+|.
T Consensus       409 gsv~iW~v~tgKlE~~l~~s--~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  409 GSVYIWSVFTGKLEKVLSLS--TSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             CcEEEEEccCceEEEEeccC--CCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            99999999999854444433  3334799999999999999999999999993

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=3.4e-32  Score=220.39  Aligned_cols=256  Identities=24%  Similarity=0.400  Sum_probs=206.3

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEee--cCCeEEEEEcCC------------ccccceecccCcceEEEEeCCCCCceE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGG--INGIIRVIDVSN------------EKLHKSFVGHGDSINEIRTQPLKPSLV   69 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~~l   69 (294)
                      +..++..|++++.+  |+|. .+|+|+  .||.++||+.+.            .+.+.+...|.+.|+|+.|+| |+++|
T Consensus         9 v~H~~~~IfSIdv~--pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~-dG~~l   84 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVH--PDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSP-DGSYL   84 (942)
T ss_pred             cccCCeeEEEEEec--CCce-eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECC-CCCeE
Confidence            34566789999987  9999 999999  999999998642            234556678999999999999 99999


Q ss_pred             EEeeCCCcEEEEEcCC------------------CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           70 VSASKDESVRLWNVQT------------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        70 ~s~~~dg~i~vwd~~~------------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      |+|+.|+.|.||....                  .+....+.   +|.+.|..++|+| ++.+|++++.|++|.+|+.++
T Consensus        85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~---~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~t  160 (942)
T KOG0973|consen   85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR---GHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKT  160 (942)
T ss_pred             eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe---cCCCccceeccCC-CccEEEEecccceEEEEcccc
Confidence            9999999999998862                  12334444   7999999999999 999999999999999999998


Q ss_pred             cccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCC----------
Q 022590          132 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP----------  199 (294)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~----------  199 (294)
                      +                       .....+.+|...|..+.|+  |++|++-+.|++|++|++.+.....          
T Consensus       161 F-----------------------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~  217 (942)
T KOG0973|consen  161 F-----------------------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESP  217 (942)
T ss_pred             c-----------------------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence            3                       4577889999999999998  9999999999999999966521100          


Q ss_pred             ---------------------------------CCCCceeeeeeecCCCCeeEEEEcccC-----------Cc----ceE
Q 022590          200 ---------------------------------GEGTADILQKYPVPECDIWFIKFSCDF-----------HY----NAA  231 (294)
Q Consensus       200 ---------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~----~~l  231 (294)
                                                       ....+..-..+-+|..++.+++|+|.-           ++    ..+
T Consensus       218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~  297 (942)
T KOG0973|consen  218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA  297 (942)
T ss_pred             CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence                                             001122234456788899999999831           11    278


Q ss_pred             EEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          232 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |+|+.|+.|.||.....+|..+..-   -....|.+++|+|||..|+.+|.||+|.+..+++
T Consensus       298 AvgSqDrSlSVW~T~~~RPl~vi~~---lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  298 AVGSQDRSLSVWNTALPRPLFVIHN---LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             EEecCCccEEEEecCCCCchhhhhh---hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            9999999999999977765444322   3346899999999999999999999999998864

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.6e-33  Score=213.18  Aligned_cols=253  Identities=21%  Similarity=0.328  Sum_probs=205.0

Q ss_pred             ccCceeE---EEEEeecCCCceEEEEeecCCeEEEEEcCCcc------ccceecccCcceEEEEeCCCCCceEEEeeCCC
Q 022590            6 QKEESFY---TVSWACNVDGIPFLVAGGINGIIRVIDVSNEK------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDE   76 (294)
Q Consensus         6 ~h~~~v~---~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg   76 (294)
                      +|...|.   ++..+. |.++ +|++|+.||.|++|+.....      ...+++.|.+.|+.+.... +++.|++++.|-
T Consensus        19 qn~~~v~~~~~Lq~da-~~~r-yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-~~~tlIS~SsDt   95 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDA-PNGR-YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-NGKTLISASSDT   95 (735)
T ss_pred             hccccccchhhccccC-CCCc-eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-CCCceEEecCCc
Confidence            3444455   455552 5666 99999999999999986432      3678889999999999998 888999999999


Q ss_pred             cEEEEEcCCCc--eEEEeeccCCCCCceeEEEE-ecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           77 SVRLWNVQTGI--CILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        77 ~i~vwd~~~~~--~~~~~~~~~~~~~~v~~l~~-~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      +|++|+...+.  +...+.   .|...|.|+++ .+ +..++|+||.|+.|.+||++.+.......+.            
T Consensus        96 TVK~W~~~~~~~~c~stir---~H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n------------  159 (735)
T KOG0308|consen   96 TVKVWNAHKDNTFCMSTIR---THKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFN------------  159 (735)
T ss_pred             eEEEeecccCcchhHhhhh---cccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhcc------------
Confidence            99999998773  455555   69999999999 55 8889999999999999999975331111111            


Q ss_pred             eeeceEEee-cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590          154 VQFPVFIAS-VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA  230 (294)
Q Consensus       154 ~~~~~~~~~-~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  230 (294)
                       ..+...+. ++..+|.+++.+  +..+++|+..+.+++||.++.+         .+..+.+|...|..+..+++|  ..
T Consensus       160 -~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~---------kimkLrGHTdNVr~ll~~dDG--t~  227 (735)
T KOG0308|consen  160 -NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK---------KIMKLRGHTDNVRVLLVNDDG--TR  227 (735)
T ss_pred             -ccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc---------ceeeeeccccceEEEEEcCCC--Ce
Confidence             11222333 788899999987  5699999999999999999876         577788999999999999999  68


Q ss_pred             EEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       231 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +++++.||+|++||+...++...  +.  .|...|.++..+|+-.++.+|+.||.|+.=|+++
T Consensus       228 ~ls~sSDgtIrlWdLgqQrCl~T--~~--vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  228 LLSASSDGTIRLWDLGQQRCLAT--YI--VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             EeecCCCceEEeeeccccceeee--EE--eccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence            99999999999999988764443  33  6777899999999999999999999999877764

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.8e-31  Score=177.52  Aligned_cols=253  Identities=17%  Similarity=0.227  Sum_probs=196.6

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-----ccceecccCcceEEEEeCCC---CCceEEEeeC-C
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHGDSINEIRTQPL---KPSLVVSASK-D   75 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~---~~~~l~s~~~-d   75 (294)
                      +.|++.|+|.+|+  |+|+ ++++|+.|.+|++.-.....     .-..+..|.+.|..++|..+   .+.+|++++. |
T Consensus        86 khhkgsiyc~~ws--~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd  162 (350)
T KOG0641|consen   86 KHHKGSIYCTAWS--PCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD  162 (350)
T ss_pred             cccCccEEEEEec--CccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence            3789999999998  9999 99999999999997654332     22356779999999999652   3557777654 6


Q ss_pred             CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      ..|.+-|-.+|+....+.   +|.+.|.++---  ++-++++|+.|.+|++||++-..........+.            
T Consensus       163 c~iy~tdc~~g~~~~a~s---ghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~------------  225 (350)
T KOG0641|consen  163 CKIYITDCGRGQGFHALS---GHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH------------  225 (350)
T ss_pred             ceEEEeecCCCCcceeec---CCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCccc------------
Confidence            778888888999888888   799999887532  678999999999999999997322111100000            


Q ss_pred             eceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590          156 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                          .-.-....|.+++.+  |++|++|-.|....+||++.+.         .++.+..|...|.++.|+|..  .++++
T Consensus       226 ----~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r---------~iq~f~phsadir~vrfsp~a--~yllt  290 (350)
T KOG0641|consen  226 ----DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR---------MIQRFHPHSADIRCVRFSPGA--HYLLT  290 (350)
T ss_pred             ----CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc---------eeeeeCCCccceeEEEeCCCc--eEEEE
Confidence                000112445555554  9999999999999999999775         788899999999999999998  69999


Q ss_pred             EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++.|..|++-|++..-...........|+..+..+.|+|..--+++.+.|.++.+|-+.
T Consensus       291 ~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  291 CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            99999999999986522222222233778889999999999889999999999999765

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-31  Score=209.29  Aligned_cols=233  Identities=21%  Similarity=0.312  Sum_probs=192.9

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC-----CceEEEeec
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-----GICILIFAG   94 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~   94 (294)
                      |.++ ++++|...|.+.+||+.....+.+.++|.+.|.+++.+| ++..+++|+.|.+|++||..-     +...+.+..
T Consensus       422 pgd~-~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl  499 (888)
T KOG0306|consen  422 PGDR-YIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL  499 (888)
T ss_pred             CCCc-eEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence            6555 777777777777777777777777889999999999999 889999999999999999741     111111110


Q ss_pred             ----cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceee
Q 022590           95 ----AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC  170 (294)
Q Consensus        95 ----~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (294)
                          .-.-...|.|+.++| ++.+|+++-.|+++++|-+.+                       ..-...+.+|.-||.|
T Consensus       500 ~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDt-----------------------lKFflsLYGHkLPV~s  555 (888)
T KOG0306|consen  500 KHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDT-----------------------LKFFLSLYGHKLPVLS  555 (888)
T ss_pred             ccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecc-----------------------eeeeeeecccccceeE
Confidence                002567899999999 999999999999999999998                       4456788999999999


Q ss_pred             ccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590          171 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       171 ~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                      +..+  +..+++|+.|..|++|-+.=+.         +-..+-.|...|.++.|.|..  ..+.+++.|+.|+-||-.+-
T Consensus       556 mDIS~DSklivTgSADKnVKiWGLdFGD---------CHKS~fAHdDSvm~V~F~P~~--~~FFt~gKD~kvKqWDg~kF  624 (888)
T KOG0306|consen  556 MDISPDSKLIVTGSADKNVKIWGLDFGD---------CHKSFFAHDDSVMSVQFLPKT--HLFFTCGKDGKVKQWDGEKF  624 (888)
T ss_pred             EeccCCcCeEEeccCCCceEEeccccch---------hhhhhhcccCceeEEEEcccc--eeEEEecCcceEEeechhhh
Confidence            8775  8899999999999999998665         556677888999999999977  58899999999999998886


Q ss_pred             CceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +  ....+.  +|...|++++.+|+|.+++++|.|..|++|....
T Consensus       625 e--~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  625 E--EIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             h--hheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence            5  344444  8889999999999999999999999999998653

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=100.00  E-value=1.3e-31  Score=193.69  Aligned_cols=254  Identities=17%  Similarity=0.272  Sum_probs=201.0

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC----------------ccccceecccCcceEEEEeCCCCCceE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----------------EKLHKSFVGHGDSINEIRTQPLKPSLV   69 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------------~~~~~~~~~h~~~v~~~~~~~~~~~~l   69 (294)
                      .|.+.++.+.-+.-++.. +.++-+..|.|+||++..                .+++.++.+|...=..|+|||.....|
T Consensus       149 ~h~g~~NRvr~~~~~~~~-~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEV-LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             ccccccceeeecccCCcc-eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            567777777776444444 777888899999999742                256778889999999999999666679


Q ss_pred             EEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCC
Q 022590           70 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF  149 (294)
Q Consensus        70 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  149 (294)
                      ++|..-+.|++|...++.-..--..+.+|+..|-.|+|+|.....|++|+.||+|+|||+|...                
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~----------------  291 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP----------------  291 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC----------------
Confidence            9999999999999988765444344447999999999999889999999999999999999842                


Q ss_pred             CCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC
Q 022590          150 PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH  227 (294)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  227 (294)
                           ..+......|...|+.++|+  ..+|++|+.||+++|||+|..+      ..+++..++.|..+|+++.|+|...
T Consensus       292 -----~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~------~~~pVA~fk~Hk~pItsieW~p~e~  360 (440)
T KOG0302|consen  292 -----KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK------SGQPVATFKYHKAPITSIEWHPHED  360 (440)
T ss_pred             -----ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc------CCCcceeEEeccCCeeEEEeccccC
Confidence                 23444558899999999998  4489999999999999999876      3467889999999999999999876


Q ss_pred             cceEEEEcCCCeEEEEeccCCCc--------------e-eeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEe
Q 022590          228 YNAAAIGNREGKIFVWELQSSPP--------------V-LIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWD  290 (294)
Q Consensus       228 ~~~l~~~~~dg~i~i~d~~~~~~--------------~-~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~  290 (294)
                       ..+++++.|.+|.+||+.-..-              + +...+.| .....+..+.|+++- .+|++.+.|| +.||.
T Consensus       361 -s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVH-qGQke~KevhWH~QiPG~lvsTa~dG-fnVfk  436 (440)
T KOG0302|consen  361 -SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVH-QGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK  436 (440)
T ss_pred             -ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEe-cchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence             6888999999999999864321              0 0011111 123568889999863 4788888998 55664

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.5e-32  Score=191.40  Aligned_cols=249  Identities=17%  Similarity=0.280  Sum_probs=210.9

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEc------CC----------------------------------cc
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV------SN----------------------------------EK   44 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~------~~----------------------------------~~   44 (294)
                      .+|.+.|++++|.  +.+. ++++++.|++-.||..      ..                                  ..
T Consensus       187 ~GH~GSVNsikfh--~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv  263 (481)
T KOG0300|consen  187 TGHTGSVNSIKFH--NSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV  263 (481)
T ss_pred             cccccceeeEEec--cccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence            3899999999997  7787 9999999999999962      10                                  02


Q ss_pred             ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcE
Q 022590           45 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV  124 (294)
Q Consensus        45 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i  124 (294)
                      ++..+.+|.+.|.+..|-. +++.+++++.|.+..+||+++++.+..+.   +|....+.++-+| ...++++++.|.+.
T Consensus       264 Pl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt---GHd~ELtHcstHp-tQrLVvTsSrDtTF  338 (481)
T KOG0300|consen  264 PLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILT---GHDSELTHCSTHP-TQRLVVTSSRDTTF  338 (481)
T ss_pred             eeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceecccc---CcchhccccccCC-cceEEEEeccCcee
Confidence            3456788999999999998 99999999999999999999999999888   7999999999999 88999999999999


Q ss_pred             EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCC
Q 022590          125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGT  203 (294)
Q Consensus       125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  203 (294)
                      ++||++..                      ...+..+.+|...|+++.|. ++.+++|+.|.+|++||+++...      
T Consensus       339 RLWDFRea----------------------I~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRs------  390 (481)
T KOG0300|consen  339 RLWDFREA----------------------IQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRS------  390 (481)
T ss_pred             Eeccchhh----------------------cceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccC------
Confidence            99999962                      34577899999999999998 89999999999999999997543      


Q ss_pred             ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC--CEEEEec
Q 022590          204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG--STILSCC  281 (294)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~  281 (294)
                        ++..+.. ..+++.++.+...  .+++.--.+..|++||++........+....+|...|+|++|..+.  .-|++++
T Consensus       391 --plATIRt-dS~~NRvavs~g~--~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcG  465 (481)
T KOG0300|consen  391 --PLATIRT-DSPANRVAVSKGH--PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCG  465 (481)
T ss_pred             --cceeeec-CCccceeEeecCC--ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCccccccccc
Confidence              3444433 4568888888877  5889899999999999998764444444456899999999998654  3588999


Q ss_pred             cCCcEEEEecCCC
Q 022590          282 EDGAIWRWDAIPT  294 (294)
Q Consensus       282 ~dg~i~vw~~~~~  294 (294)
                      .|..+.=|++..+
T Consensus       466 FDR~v~gW~in~p  478 (481)
T KOG0300|consen  466 FDRMVAGWKINTP  478 (481)
T ss_pred             ccceeeeeEeccc
Confidence            9999999998753

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.6e-31  Score=181.73  Aligned_cols=204  Identities=21%  Similarity=0.326  Sum_probs=177.9

Q ss_pred             ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcE
Q 022590           45 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV  124 (294)
Q Consensus        45 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i  124 (294)
                      ..+.+..++++|..+.|+- ++++.++++.|.+|++|+...+.+++++.   +|...|..++.+. ++..|++|+.|..+
T Consensus         9 r~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYs---ghG~EVlD~~~s~-Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYS---GHGHEVLDAALSS-DNSKFASCGGDKAV   83 (307)
T ss_pred             hceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeec---CCCceeeeccccc-cccccccCCCCceE
Confidence            3456788999999999999 99999999999999999999999999998   7999999999998 88889999999999


Q ss_pred             EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCC
Q 022590          125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG  202 (294)
Q Consensus       125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~  202 (294)
                      .+||+.+                       ......+.+|.+.|+.+.|+  ...+++|+.|..+++||.++..      
T Consensus        84 ~vwDV~T-----------------------Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s------  134 (307)
T KOG0316|consen   84 QVWDVNT-----------------------GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS------  134 (307)
T ss_pred             EEEEccc-----------------------CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC------
Confidence            9999999                       55678899999999999998  6789999999999999999874      


Q ss_pred             CceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc
Q 022590          203 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                       ..+++.+......|.++..+..    .+++|+.||+++.||++.++.  ...    --..||++++|+++++.++.++.
T Consensus       135 -~ePiQildea~D~V~Si~v~~h----eIvaGS~DGtvRtydiR~G~l--~sD----y~g~pit~vs~s~d~nc~La~~l  203 (307)
T KOG0316|consen  135 -FEPIQILDEAKDGVSSIDVAEH----EIVAGSVDGTVRTYDIRKGTL--SSD----YFGHPITSVSFSKDGNCSLASSL  203 (307)
T ss_pred             -CCccchhhhhcCceeEEEeccc----EEEeeccCCcEEEEEeeccee--ehh----hcCCcceeEEecCCCCEEEEeec
Confidence             3356666666777888887754    589999999999999999852  111    22368999999999999999999


Q ss_pred             CCcEEEEecCC
Q 022590          283 DGAIWRWDAIP  293 (294)
Q Consensus       283 dg~i~vw~~~~  293 (294)
                      |+++++.|-++
T Consensus       204 ~stlrLlDk~t  214 (307)
T KOG0316|consen  204 DSTLRLLDKET  214 (307)
T ss_pred             cceeeecccch
Confidence            99999988654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=100.00  E-value=5.7e-31  Score=193.56  Aligned_cols=239  Identities=16%  Similarity=0.226  Sum_probs=200.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      ..+.++...  |... .+++|+.|..+.++|...++.+..++||...|+.+.++| +...+++++.|..|+||.......
T Consensus       220 pgi~ald~~--~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  220 PGITALDII--PSSS-KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCeeEEeec--CCCC-cceecCCCCceEEEecchhhhhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccC
Confidence            346666665  5534 899999999999999999999999999999999999999 888999999999999999987776


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      .....   .|..+|+.+..+| .+.||++++.||+..+.|++++....                     ........-.+
T Consensus       296 ~~~~~---~h~~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt---------------------~vs~~~s~v~~  350 (506)
T KOG0289|consen  296 PTSSR---PHEEPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLT---------------------VVSDETSDVEY  350 (506)
T ss_pred             ccccc---cccccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEE---------------------EEeecccccee
Confidence            66666   6999999999999 99999999999999999999843211                     11111122346


Q ss_pred             eeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          169 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       169 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      ++..|+  |.+|.+|..|+.+++||+.++.         ....+++|..+|..++|+.+|  .+|+++.+|+.|++||++
T Consensus       351 ts~~fHpDgLifgtgt~d~~vkiwdlks~~---------~~a~Fpght~~vk~i~FsENG--Y~Lat~add~~V~lwDLR  419 (506)
T KOG0289|consen  351 TSAAFHPDGLIFGTGTPDGVVKIWDLKSQT---------NVAKFPGHTGPVKAISFSENG--YWLATAADDGSVKLWDLR  419 (506)
T ss_pred             EEeeEcCCceEEeccCCCceEEEEEcCCcc---------ccccCCCCCCceeEEEeccCc--eEEEEEecCCeEEEEEeh
Confidence            777776  8899999999999999999765         578889999999999999999  799999999999999999


Q ss_pred             CCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          247 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      ..+......+.   ...++.++.|.+.|.+|+.++.|=.|++++
T Consensus       420 Kl~n~kt~~l~---~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  420 KLKNFKTIQLD---EKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             hhcccceeecc---ccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            98754444443   224799999999999999998887777776

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=7.2e-32  Score=199.08  Aligned_cols=217  Identities=19%  Similarity=0.361  Sum_probs=185.5

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-------ccceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-------LHKSFVGHGDSINEIRTQPLKPSLVVSASKD   75 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   75 (294)
                      .|..|++.-++++|++...|  .|++++.|+.|++||+....       +...+.+|...|..++|++.+..++++++.|
T Consensus       172 ~L~gH~~eg~glsWn~~~~g--~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd  249 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEG--TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD  249 (422)
T ss_pred             EEEeecccccccccccccce--eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC
Confidence            45688888899999965555  69999999999999996432       3456789999999999999999999999999


Q ss_pred             CcEEEEEcCC--CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           76 ESVRLWNVQT--GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        76 g~i~vwd~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      +.+.|||+++  .++.....   +|.++|+|++|+|.++.+||+|+.|++|++||+|..                     
T Consensus       250 ~~L~iwD~R~~~~~~~~~~~---ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL---------------------  305 (422)
T KOG0264|consen  250 GKLMIWDTRSNTSKPSHSVK---AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNL---------------------  305 (422)
T ss_pred             CeEEEEEcCCCCCCCccccc---ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhc---------------------
Confidence            9999999995  34444444   799999999999999999999999999999999984                     


Q ss_pred             eeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCC-----CCCCCceeeeeeecCCCCeeEEEEccc
Q 022590          154 VQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCD  225 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~  225 (294)
                       ..++..+.+|...|.++.|+   ...|++++.|+.+.+||+..-...     ....+..++....+|...|..+.|+|.
T Consensus       306 -~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~  384 (422)
T KOG0264|consen  306 -NKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN  384 (422)
T ss_pred             -ccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC
Confidence             45788999999999999998   678999999999999999765332     233456677888899999999999999


Q ss_pred             CCcceEEEEcCCCeEEEEeccC
Q 022590          226 FHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       226 ~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      .. -.+++.++|+.+.||+...
T Consensus       385 eP-W~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  385 EP-WTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CC-eEEEEecCCceEEEeeccc
Confidence            86 6788999999999999874

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.7e-32  Score=214.74  Aligned_cols=240  Identities=18%  Similarity=0.349  Sum_probs=198.8

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCC---ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~   86 (294)
                      ....+.|. +-+.+ +||+++.+|.|.+||+..   .+.+..|..|+..++++.|++....+|++|+.||+|++||++..
T Consensus        89 S~~DVkW~-~~~~N-lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   89 SAADVKWG-QLYSN-LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             ehhhcccc-cchhh-hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence            34567787 44555 999999999999999987   66777899999999999999989999999999999999999999


Q ss_pred             ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590           87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  166 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (294)
                      +....+.   +....|..++|+|..++.|+++...|.+++||+|..                      ..+...+.+|.+
T Consensus       167 ~S~~t~~---~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp----------------------~r~~~k~~AH~G  221 (839)
T KOG0269|consen  167 KSKSTFR---SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP----------------------DRCEKKLTAHNG  221 (839)
T ss_pred             ccccccc---ccchhhhceeeccCCCceEEEecCCceEEEeeccCc----------------------hhHHHHhhcccC
Confidence            8888887   578899999999988999999999999999999984                      345667889999


Q ss_pred             ceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc--CCCeEEE
Q 022590          167 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFV  242 (294)
Q Consensus       167 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg~i~i  242 (294)
                      +|.|+.|+  +.+||+|+.|+.|+|||+.+.+.       .....+. ...++..++|-|... ..|++++  .|-.|+|
T Consensus       222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-------~~~~tIn-Tiapv~rVkWRP~~~-~hLAtcsmv~dtsV~V  292 (839)
T KOG0269|consen  222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-------KPKHTIN-TIAPVGRVKWRPARS-YHLATCSMVVDTSVHV  292 (839)
T ss_pred             ceEEEeecCCCceeeecCCCccEEEEeccCCCc-------cceeEEe-ecceeeeeeeccCcc-chhhhhhccccceEEE
Confidence            99999998  77999999999999999986542       1222222 246789999999987 5677665  4778999


Q ss_pred             EeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEEeccCCcEEE
Q 022590          243 WELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWR  288 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~v  288 (294)
                      ||++..- ++...+  ..|...++.++|.. |...|.+++.||.|..
T Consensus       293 WDvrRPY-IP~~t~--~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  293 WDVRRPY-IPYATF--LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             Eeecccc-ccceee--eccCccccceeccCCCceeeEeecCccHHHH
Confidence            9998863 233333  37888999999976 4568889999998754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-30  Score=182.07  Aligned_cols=264  Identities=16%  Similarity=0.268  Sum_probs=196.6

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cccceecccCcceEEEEeCCC-CCceEEEeeCCCcEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRL   80 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~v   80 (294)
                      +|++-|.++.|.  +.|+ .+|+++.|++|+|||....    .+....+.|.+.|..+.|.+. =|+.+|+++.|+++.|
T Consensus        11 ~h~DlihdVs~D--~~GR-RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   11 GHKDLIHDVSFD--FYGR-RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             CCcceeeeeeec--ccCc-eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            899999999998  6788 9999999999999996443    355677899999999999653 4889999999999999


Q ss_pred             EEcCC------C---ceEEEeeccCCCCCceeEEEEecC-CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590           81 WNVQT------G---ICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  150 (294)
Q Consensus        81 wd~~~------~---~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (294)
                      |.-..      +   .....+.   ...+.|++++|.|. -+-.+++++.||.+|||+.........-.+..+-      
T Consensus        88 WEE~~~~~~~~~~~Wv~~ttl~---DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei------  158 (361)
T KOG2445|consen   88 WEEQEKSEEAHGRRWVRRTTLV---DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI------  158 (361)
T ss_pred             eeecccccccccceeEEEEEee---cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh------
Confidence            97521      1   1122333   57789999999993 3678999999999999998763322111111000      


Q ss_pred             CceeeeceEEeecCCCceeeccee-----cceEEEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE
Q 022590          151 TKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI  220 (294)
Q Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  220 (294)
                          +........+..+..|+.|+     ..+|++|+.+     +.+.||.......     ....+.+++.+..+|+.+
T Consensus       159 ----~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r-----Kw~kva~L~d~~dpI~di  229 (361)
T KOG2445|consen  159 ----QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR-----KWLKVAELPDHTDPIRDI  229 (361)
T ss_pred             ----hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc-----eeeeehhcCCCCCcceee
Confidence                00011223356677788886     5678888776     5788888765543     444667778899999999


Q ss_pred             EEcccCC--cceEEEEcCCCeEEEEeccCCC---------------ceeeeecc-ccccCCCeEEEEEccCCCEEEEecc
Q 022590          221 KFSCDFH--YNAAAIGNREGKIFVWELQSSP---------------PVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       221 ~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---------------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                      +|.|+-.  +.+||+++.|| |+||.++...               ...+..+. +..|+++|..+.|+-.|..|++.|.
T Consensus       230 ~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd  308 (361)
T KOG2445|consen  230 SWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD  308 (361)
T ss_pred             eeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence            9999743  46799999999 9999997411               11222222 5689999999999999999999999


Q ss_pred             CCcEEEEec
Q 022590          283 DGAIWRWDA  291 (294)
Q Consensus       283 dg~i~vw~~  291 (294)
                      ||+|++|..
T Consensus       309 DG~VRLWka  317 (361)
T KOG2445|consen  309 DGCVRLWKA  317 (361)
T ss_pred             Cceeeehhh
Confidence            999999975

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.9e-32  Score=203.68  Aligned_cols=212  Identities=24%  Similarity=0.339  Sum_probs=173.8

Q ss_pred             cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC-CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC
Q 022590           44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN  122 (294)
Q Consensus        44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg  122 (294)
                      +.+.++.+|+..|+++.|.|..+.+|++++.|+.|+||++.. +++++.|.   +|..+|.+++|++ .+..|++++.|+
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~---gH~k~Vrd~~~s~-~g~~fLS~sfD~  280 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK---GHRKPVRDASFNN-CGTSFLSASFDR  280 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh---cchhhhhhhhccc-cCCeeeeeecce
Confidence            456788999999999999998889999999999999999987 78888888   7999999999998 889999999999


Q ss_pred             cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCC
Q 022590          123 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSP  199 (294)
Q Consensus       123 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~  199 (294)
                      .+++||++++..                       ...+ .-...+.|+.|+   .+.|++|+.|+.|+.||+|+++   
T Consensus       281 ~lKlwDtETG~~-----------------------~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k---  333 (503)
T KOG0282|consen  281 FLKLWDTETGQV-----------------------LSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK---  333 (503)
T ss_pred             eeeeeccccceE-----------------------EEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH---
Confidence            999999999532                       1111 123455677775   4799999999999999999876   


Q ss_pred             CCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee-------------------------
Q 022590          200 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-------------------------  254 (294)
Q Consensus       200 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------  254 (294)
                            .++++..|-..+..+.|-+++  ..+++.++|+.+++|+.+..-+....                         
T Consensus       334 ------vvqeYd~hLg~i~~i~F~~~g--~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~  405 (503)
T KOG0282|consen  334 ------VVQEYDRHLGAILDITFVDEG--RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM  405 (503)
T ss_pred             ------HHHHHHhhhhheeeeEEccCC--ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc
Confidence                  688888888999999999999  58999999999999998754211000                         


Q ss_pred             -------ec----------ccccc--CCCeEEEEEccCCCEEEEeccCCcEEEEecCCC
Q 022590          255 -------RL----------SHAQS--KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT  294 (294)
Q Consensus       255 -------~~----------~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  294 (294)
                             ..          ...+|  .+.-..+.|||||++|++|+.||.+.+||.+++
T Consensus       406 dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~  464 (503)
T KOG0282|consen  406 DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT  464 (503)
T ss_pred             CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence                   00          01112  144567899999999999999999999998763

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.1e-32  Score=192.83  Aligned_cols=240  Identities=18%  Similarity=0.244  Sum_probs=197.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      -++++|.|++|+  .|.. +||+|+.||.|++|.+.+|.+++.|. +|+..|+|+.|+. ++..+.+++.|.++++.-+.
T Consensus       261 Mmd~aVlci~FS--RDsE-MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlK  336 (508)
T KOG0275|consen  261 MMDDAVLCISFS--RDSE-MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLK  336 (508)
T ss_pred             ecccceEEEeec--ccHH-HhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccc
Confidence            357899999998  8888 99999999999999999999999997 8999999999999 88899999999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      +|++++.+.   +|.+.|+...|.+ +++.+++++.||+|++|+..+.......    .                 ..+.
T Consensus       337 SGK~LKEfr---GHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tf----k-----------------~~~~  391 (508)
T KOG0275|consen  337 SGKCLKEFR---GHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTF----K-----------------PLGT  391 (508)
T ss_pred             cchhHHHhc---CccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhc----c-----------------CCCC
Confidence            999999998   7999999999999 9999999999999999999884322111    0                 1112


Q ss_pred             CCceeecce---ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec---CCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          165 SNYVDCNRW---LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       165 ~~~i~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ..+|..+..   +...++++...+++.+.++...          .++.+..   ..+...+...+|.|  .++++.++|+
T Consensus       392 d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ----------vVrsfsSGkREgGdFi~~~lSpkG--ewiYcigED~  459 (508)
T KOG0275|consen  392 DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ----------VVRSFSSGKREGGDFINAILSPKG--EWIYCIGEDG  459 (508)
T ss_pred             cccceeEEEcCCCCceEEEEcCCCeEEEEeccce----------EEeeeccCCccCCceEEEEecCCC--cEEEEEccCc
Confidence            223333322   3678899999999999998643          3444332   34566678899998  6999999999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      .++.|.+.+++.  ...+.  -|...+..++-+|..+.||+-++||.+++|.
T Consensus       460 vlYCF~~~sG~L--E~tl~--VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  460 VLYCFSVLSGKL--ERTLP--VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEEEeecCce--eeeee--cccccccccccCcccchhhhhcccchhhhcC
Confidence            999999999873  33443  5667788999999999999999999999995

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=100.00  E-value=1.1e-30  Score=196.18  Aligned_cols=262  Identities=17%  Similarity=0.253  Sum_probs=189.9

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc----cccee-cccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i   78 (294)
                      +..|...|.++++.  |.|. .|++|+.|..|++||+....    ..+.+ ......|++++|++ .+..|++.+.....
T Consensus       163 l~hgtk~Vsal~~D--p~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~-Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  163 LKHGTKIVSALAVD--PSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSV-TGDQILVVSGSAQA  238 (641)
T ss_pred             ccCCceEEEEeeec--CCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeeecC-CCCeEEEEecCcce
Confidence            56788899999997  8898 99999999999999986532    22222 23455899999999 55556666666789


Q ss_pred             EEEEcCCCceEEEe---------eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCC
Q 022590           79 RLWNVQTGICILIF---------AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF  149 (294)
Q Consensus        79 ~vwd~~~~~~~~~~---------~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  149 (294)
                      +|+|-...+.....         ...++|...++|.+|+|.....|++++.||++++||+.......+-           
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV-----------  307 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV-----------  307 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE-----------
Confidence            99997543333222         2345899999999999988899999999999999999874321100           


Q ss_pred             CCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC
Q 022590          150 PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH  227 (294)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  227 (294)
                            .......+..-+++.++|+  +.+||+|+.||.|.+|+.......    ..-.+.........|+++.||++| 
T Consensus       308 ------ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~----p~~~vk~AH~~g~~Itsi~FS~dg-  376 (641)
T KOG0772|consen  308 ------IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR----PVMKVKDAHLPGQDITSISFSYDG-  376 (641)
T ss_pred             ------EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc----cceEeeeccCCCCceeEEEecccc-
Confidence                  0011112344567888887  889999999999999998654321    112233333334489999999999 


Q ss_pred             cceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc------CCcEEEEecCC
Q 022590          228 YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE------DGAIWRWDAIP  293 (294)
Q Consensus       228 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~vw~~~~  293 (294)
                       ++|++-+.|+.+++||++..+.. +.....-....+-+.++|||+.++|++|..      .|.+.+||..+
T Consensus       377 -~~LlSRg~D~tLKvWDLrq~kkp-L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t  446 (641)
T KOG0772|consen  377 -NYLLSRGFDDTLKVWDLRQFKKP-LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT  446 (641)
T ss_pred             -chhhhccCCCceeeeeccccccc-hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence             69999999999999999987532 222222233456788999999999999853      46688888653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.5e-30  Score=184.78  Aligned_cols=243  Identities=17%  Similarity=0.313  Sum_probs=206.7

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +.+|++.|+.++-.   .+++.+.+++.|.+.+||.+++++++.++.+|.+.|++++|++ .+.++++++.|++-.||..
T Consensus       144 ~~GHkDGiW~Vaa~---~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~  219 (481)
T KOG0300|consen  144 LEGHKDGIWHVAAD---STQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKA  219 (481)
T ss_pred             hcccccceeeehhh---cCCcceeecccccceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHH
Confidence            45899999999984   4556999999999999999999999999999999999999999 8999999999999999962


Q ss_pred             ------CCC----------------------------------ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc
Q 022590           84 ------QTG----------------------------------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT  123 (294)
Q Consensus        84 ------~~~----------------------------------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~  123 (294)
                            ...                                  -++..+   .+|.+.|.+..|.. ++..+++++.|.+
T Consensus       220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l---tgH~~vV~a~dWL~-gg~Q~vTaSWDRT  295 (481)
T KOG0300|consen  220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL---TGHRAVVSACDWLA-GGQQMVTASWDRT  295 (481)
T ss_pred             hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee---eccccceEehhhhc-Ccceeeeeecccc
Confidence                  110                                  011222   37999999999998 8999999999999


Q ss_pred             EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC
Q 022590          124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE  201 (294)
Q Consensus       124 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~  201 (294)
                      ..+||+.+                       ..++..+.+|...++-++-+  ..++++++.|.+.++||++.       
T Consensus       296 AnlwDVEt-----------------------ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-------  345 (481)
T KOG0300|consen  296 ANLWDVET-----------------------GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-------  345 (481)
T ss_pred             ceeeeecc-----------------------CceeccccCcchhccccccCCcceEEEEeccCceeEeccchh-------
Confidence            99999999                       66788889999988887776  66888999999999999994       


Q ss_pred             CCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec
Q 022590          202 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC  281 (294)
Q Consensus       202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  281 (294)
                       ....+..+++|...+++..|..+.   .+++|+.|.+|++||+++... ....+.   ...+++.++.+..++.++.--
T Consensus       346 -aI~sV~VFQGHtdtVTS~vF~~dd---~vVSgSDDrTvKvWdLrNMRs-plATIR---tdS~~NRvavs~g~~iIAiPh  417 (481)
T KOG0300|consen  346 -AIQSVAVFQGHTDTVTSVVFNTDD---RVVSGSDDRTVKVWDLRNMRS-PLATIR---TDSPANRVAVSKGHPIIAIPH  417 (481)
T ss_pred             -hcceeeeecccccceeEEEEecCC---ceeecCCCceEEEeeeccccC-cceeee---cCCccceeEeecCCceEEecc
Confidence             344678899999999999999886   599999999999999998753 223332   236799999999988999988


Q ss_pred             cCCcEEEEecC
Q 022590          282 EDGAIWRWDAI  292 (294)
Q Consensus       282 ~dg~i~vw~~~  292 (294)
                      .+..|++||++
T Consensus       418 DNRqvRlfDln  428 (481)
T KOG0300|consen  418 DNRQVRLFDLN  428 (481)
T ss_pred             CCceEEEEecC
Confidence            88899999986

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.2e-30  Score=190.87  Aligned_cols=235  Identities=16%  Similarity=0.224  Sum_probs=187.9

Q ss_pred             CCceEEEEeecCCeEEEEEcCCcc---------------------ccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590           21 DGIPFLVAGGINGIIRVIDVSNEK---------------------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~---------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      .|+ |+|.|+.|..|.|||++-..                     .-..-.+|++.|.+|+|+..-.+.||+|+.|.+|+
T Consensus       191 ~gN-yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGN-YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK  269 (463)
T ss_pred             Ccc-eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence            355 99999999999999985210                     00112469999999999987788999999999999


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      +||+.++++...+.   .|...|.++.|+|..+.+|++|+.|+++.+.|.|....                       ..
T Consensus       270 lWD~~~g~p~~s~~---~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~-----------------------s~  323 (463)
T KOG0270|consen  270 LWDVDTGKPKSSIT---HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN-----------------------SG  323 (463)
T ss_pred             EEEcCCCCcceehh---hcCCceeEEEecCCCceEEEeccccceEEeeeccCccc-----------------------cC
Confidence            99999999999988   59999999999999999999999999999999996110                       11


Q ss_pred             EeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          160 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      ..-...+.|-.+.|+   ...++++..||+++-+|+|...        .++.....|..+|.++++++.-. .++++++.
T Consensus       324 ~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~--------~~vwt~~AHd~~ISgl~~n~~~p-~~l~t~s~  394 (463)
T KOG0270|consen  324 KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--------KPVWTLKAHDDEISGLSVNIQTP-GLLSTAST  394 (463)
T ss_pred             ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC--------CceeEEEeccCCcceEEecCCCC-cceeeccc
Confidence            111234556667775   7789999999999999999864        37888999999999999998876 68999999


Q ss_pred             CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEeccCCcEEEEecCC
Q 022590          237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~~  293 (294)
                      |+.|++|++...++..+....  -.-+...|+++.|+-. +|+.|+..+.++|||+.+
T Consensus       395 d~~Vklw~~~~~~~~~v~~~~--~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  395 DKVVKLWKFDVDSPKSVKEHS--FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             cceEEEEeecCCCCccccccc--ccccceeecccCCCcceEEEecCccceEEEeeccc
Confidence            999999999877654443333  2223467778888754 567788888999999864

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=7.5e-29  Score=168.22  Aligned_cols=247  Identities=18%  Similarity=0.217  Sum_probs=188.5

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-----------cc----cceecccCcceEEEEeCCCCCceEEEe
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-----------KL----HKSFVGHGDSINEIRTQPLKPSLVVSA   72 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----------~~----~~~~~~h~~~v~~~~~~~~~~~~l~s~   72 (294)
                      ...|.+++|.  |.|. +.++|+...+.+|-....-           ++    -+.-+.|.+.|.|.+|+| .++++++|
T Consensus        32 sqairav~fh--p~g~-lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~-~geliatg  107 (350)
T KOG0641|consen   32 SQAIRAVAFH--PAGG-LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP-CGELIATG  107 (350)
T ss_pred             hhheeeEEec--CCCc-eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC-ccCeEEec
Confidence            3467777775  9998 9999999999998754321           11    123356899999999999 99999999


Q ss_pred             eCCCcEEEEEcCCCceE-----EEeeccCCCCCceeEEEEec---CCCceEEeee-cCCcEEEEeccccccccccceeec
Q 022590           73 SKDESVRLWNVQTGICI-----LIFAGAGGHRNEVLSVDFHP---SDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWT  143 (294)
Q Consensus        73 ~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~v~~l~~~~---~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~  143 (294)
                      +.|.+|++..++...+.     ..+.   .|.+.|..++|..   .++.+|++++ .|..|++-|...            
T Consensus       108 sndk~ik~l~fn~dt~~~~g~dle~n---mhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~------------  172 (350)
T KOG0641|consen  108 SNDKTIKVLPFNADTCNATGHDLEFN---MHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR------------  172 (350)
T ss_pred             CCCceEEEEecccccccccCcceeee---ecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC------------
Confidence            99999999876543221     2233   5999999999964   1345677665 466677777766            


Q ss_pred             CCCCCCCCceeeeceEEeecCCCceeec-ceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEE
Q 022590          144 DLPSKFPTKYVQFPVFIASVHSNYVDCN-RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF  222 (294)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  222 (294)
                                 ..+...+.+|.+.|.++ .|++-.+++|+.|.+|++||++-.........  ....-......|.+++.
T Consensus       173 -----------g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~--~~~~~glessavaav~v  239 (350)
T KOG0641|consen  173 -----------GQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN--DFHDGGLESSAVAAVAV  239 (350)
T ss_pred             -----------CCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccC--cccCCCcccceeEEEEE
Confidence                       55678889999998876 67899999999999999999996642111000  00000112356888999


Q ss_pred             cccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          223 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       223 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .|.+  ++|++|-.|....+||++.+.  .+.++.  .|...|+++.|+|...||++++.|..|++=|+.
T Consensus       240 dpsg--rll~sg~~dssc~lydirg~r--~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  240 DPSG--RLLASGHADSSCMLYDIRGGR--MIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             CCCc--ceeeeccCCCceEEEEeeCCc--eeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            9998  799999999999999999987  344444  788999999999999999999999999998875

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=8e-30  Score=189.02  Aligned_cols=232  Identities=19%  Similarity=0.268  Sum_probs=187.0

Q ss_pred             cCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC
Q 022590           31 INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  110 (294)
Q Consensus        31 ~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~  110 (294)
                      ....|.+|.+..........--.++|.+++-+| .+.+|+.|+..|.|.+|.+.+|..+..+.   +|-..|+|+.|+- 
T Consensus        59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~---aHYQ~ITcL~fs~-  133 (476)
T KOG0646|consen   59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLS---AHYQSITCLKFSD-  133 (476)
T ss_pred             cCccccccccCchhhhhhhcccccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHH---hhccceeEEEEeC-
Confidence            345688888766554443444568899999999 99999999899999999999999998887   7999999999997 


Q ss_pred             CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee----cceEEEeeCCCe
Q 022590          111 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNE  186 (294)
Q Consensus       111 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~  186 (294)
                      ++.+|++|+.||.|.+|++...-...              ......|...+..|.-+|+.+...    ..++++++.|.+
T Consensus       134 dgs~iiTgskDg~V~vW~l~~lv~a~--------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t  199 (476)
T KOG0646|consen  134 DGSHIITGSKDGAVLVWLLTDLVSAD--------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT  199 (476)
T ss_pred             CCcEEEecCCCccEEEEEEEeecccc--------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce
Confidence            99999999999999999987632111              111356788999999999999885    468999999999


Q ss_pred             EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce------------eee
Q 022590          187 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV------------LIA  254 (294)
Q Consensus       187 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------~~~  254 (294)
                      +++||+..+.         ++..+.. ...+.++++.|..  ..+++|+++|.|.+.++......            ...
T Consensus       200 ~k~wdlS~g~---------LLlti~f-p~si~av~lDpae--~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~  267 (476)
T KOG0646|consen  200 IKLWDLSLGV---------LLLTITF-PSSIKAVALDPAE--RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ  267 (476)
T ss_pred             EEEEEeccce---------eeEEEec-CCcceeEEEcccc--cEEEecCCcceEEeeehhcCCcccccccccccccccce
Confidence            9999999775         4555444 3568899999998  68999999999999988654311            111


Q ss_pred             eccccccCC--CeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          255 RLSHAQSKS--PIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       255 ~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .....+|.+  +|+|++++-||.+|++|+.||.++|||+.+
T Consensus       268 ~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  268 INVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             eeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence            111336666  999999999999999999999999999864

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.97  E-value=3.6e-30  Score=197.86  Aligned_cols=273  Identities=20%  Similarity=0.254  Sum_probs=195.0

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCcc------ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      ++..|+..|..+++|+.+..||.|.++|....+      ..+.+..|...|.++.|.| ...+|++++.|.++++||+.+
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence            346777777778799999999999999976432      2355678999999999999 889999999999999999999


Q ss_pred             CceEEE--eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccce------eecCCCCCCCCceeeec
Q 022590           86 GICILI--FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF------TWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        86 ~~~~~~--~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~  157 (294)
                      .+....  +.   +|...|.+++|.|.+...|++|+.||.|.|||++-........+      ...+.+  .+.......
T Consensus       132 s~l~G~~~~~---GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p--tpskp~~kr  206 (720)
T KOG0321|consen  132 SRLVGGRLNL---GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP--TPSKPLKKR  206 (720)
T ss_pred             ceeecceeec---ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC--CCCchhhcc
Confidence            887766  44   79999999999999999999999999999999997442111111      111111  122222222


Q ss_pred             eEEeecCCC----ceeeccee-cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeeecC---CCCeeEEEEcccCCc
Q 022590          158 VFIASVHSN----YVDCNRWL-GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVP---ECDIWFIKFSCDFHY  228 (294)
Q Consensus       158 ~~~~~~~~~----~i~~~~~~-~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~  228 (294)
                      ......+..    .|+.+.|- ...|++++. |+.|++||++............ ...++.+   ...+.++.....|  
T Consensus       207 ~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~-~~~~~t~skrs~G~~nL~lDssG--  283 (720)
T KOG0321|consen  207 IRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRG-SDKYPTHSKRSVGQVNLILDSSG--  283 (720)
T ss_pred             ccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCc-ccCccCcccceeeeEEEEecCCC--
Confidence            333333443    35556664 788998887 9999999999876544333222 2222333   2334445554444  


Q ss_pred             ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+|++.+.|+.|++|++.+........+.+......-..-..+|++.+|++|+.|...++|.+..
T Consensus       284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~  348 (720)
T KOG0321|consen  284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSS  348 (720)
T ss_pred             CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecC
Confidence            67888888999999999987655555544333333344556789999999999999999999864

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=4.4e-29  Score=179.78  Aligned_cols=225  Identities=18%  Similarity=0.301  Sum_probs=184.4

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .+-+|++.|+++.|+  .+|. +||+|..+|.|+||+..++.....+...-+.+.-+.|+| ....|++|+.||.+-+|.
T Consensus       101 eltgHKDSVt~~~Fs--hdgt-lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~  176 (399)
T KOG0296|consen  101 ELTGHKDSVTCCSFS--HDGT-LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQ  176 (399)
T ss_pred             EecCCCCceEEEEEc--cCce-EEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEE
Confidence            455899999999998  8898 999999999999999999988888876677889999999 899999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccccee------ecC------------
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT------WTD------------  144 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------~~~------------  144 (294)
                      +.++...+.+.   +|..++++=.|.| ++..++++..||+|++|++.+..........      ...            
T Consensus       177 ip~~~~~kv~~---Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~  252 (399)
T KOG0296|consen  177 IPSQALCKVMS---GHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGN  252 (399)
T ss_pred             CCCcceeeEec---CCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEecc
Confidence            99887777777   7999999999999 8999999999999999999985443322100      000            


Q ss_pred             -------------------CC---CCCCC------------c--------------------eeeeceEEeecCCCceee
Q 022590          145 -------------------LP---SKFPT------------K--------------------YVQFPVFIASVHSNYVDC  170 (294)
Q Consensus       145 -------------------~~---~~~~~------------~--------------------~~~~~~~~~~~~~~~i~~  170 (294)
                                         .+   .....            .                    .....+.....|+..|..
T Consensus       253 ~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~  332 (399)
T KOG0296|consen  253 SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTK  332 (399)
T ss_pred             CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEE
Confidence                               00   00000            0                    000112233458888999


Q ss_pred             cceec-ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          171 NRWLG-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       171 ~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      +.|.+ .+|++++.+|.|+.||.|+++         ++..+.+|...|..++++|+.  +++++++.|+..++|+..
T Consensus       333 l~w~~t~~l~t~c~~g~v~~wDaRtG~---------l~~~y~GH~~~Il~f~ls~~~--~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  333 LKWLNTDYLLTACANGKVRQWDARTGQ---------LKFTYTGHQMGILDFALSPQK--RLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEcCcchheeeccCceEEeeeccccc---------eEEEEecCchheeEEEEcCCC--cEEEEecCCCeEEEEecC
Confidence            99985 899999999999999999887         789999999999999999998  699999999999999864

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=1.9e-29  Score=195.52  Aligned_cols=233  Identities=20%  Similarity=0.316  Sum_probs=193.9

Q ss_pred             cccCceeEE-EEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            5 DQKEESFYT-VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         5 ~~h~~~v~~-~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .+|.+-|.. +++..+..+  .+++|+.|+.|.+|......+...+++|+..|.+++... ++. +++|+.|.++++|..
T Consensus        54 ~~~~g~i~~~i~y~e~~~~--~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~  129 (745)
T KOG0301|consen   54 EGPKGFIANSICYAESDKG--RLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI  129 (745)
T ss_pred             ccCcceeeccceeccccCc--ceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc
Confidence            356677766 777642233  599999999999999999999999999999999999876 555 999999999999986


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                        +++...++   +|+..|++++.-| ++ .++||+.|.+|++|.-.+                         .+..+.+
T Consensus       130 --~~l~~~l~---gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~~~-------------------------~l~tf~g  177 (745)
T KOG0301|consen  130 --GELVYSLQ---GHTASVWAVASLP-EN-TYVTGSADKTIKLWKGGT-------------------------LLKTFSG  177 (745)
T ss_pred             --hhhhcccC---CcchheeeeeecC-CC-cEEeccCcceeeeccCCc-------------------------hhhhhcc
Confidence              45555566   7999999999998 65 799999999999998765                         3567888


Q ss_pred             CCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          164 HSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       164 ~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      |.+.|+.+++- +..|++++.||.|++|++. ++         .+.++.+|..-++++...+++  ..++++++|+++++
T Consensus       178 HtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-ge---------~l~~~~ghtn~vYsis~~~~~--~~Ivs~gEDrtlri  245 (745)
T KOG0301|consen  178 HTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-GE---------VLLEMHGHTNFVYSISMALSD--GLIVSTGEDRTLRI  245 (745)
T ss_pred             chhheeeeEEecCCCeEeecCCceEEEEecc-Cc---------eeeeeeccceEEEEEEecCCC--CeEEEecCCceEEE
Confidence            99999999996 6699999999999999994 33         688889999999999966666  58999999999999


Q ss_pred             EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |+..  +......++    ...|.++.+-++|. +++|+.||.||||..+
T Consensus       246 W~~~--e~~q~I~lP----ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  246 WKKD--ECVQVITLP----TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eecC--ceEEEEecC----ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            9987  333333333    23689999988886 7788899999999765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3e-30  Score=198.69  Aligned_cols=248  Identities=19%  Similarity=0.346  Sum_probs=205.1

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc--cccceecccCcceEEEEe-CCCCCceEEEeeCCCcEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRT-QPLKPSLVVSASKDESVR   79 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~~~dg~i~   79 (294)
                      .++.|.+.|+.+...  .+|+ .|++++.|-+|++|+...+  -+..++..|.+-|.|+++ .+ +..++|+|+-|+.|.
T Consensus        68 sme~HsDWVNDiiL~--~~~~-tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak-~~~lvaSgGLD~~If  143 (735)
T KOG0308|consen   68 SMEHHSDWVNDIILC--GNGK-TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK-NNELVASGGLDRKIF  143 (735)
T ss_pred             hhhhhHhHHhhHHhh--cCCC-ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc-CceeEEecCCCccEE
Confidence            467899999999998  6676 7999999999999999877  577888999999999999 55 888999999999999


Q ss_pred             EEEcCCCc--eEEEeec------cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           80 LWNVQTGI--CILIFAG------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        80 vwd~~~~~--~~~~~~~------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      +||++++.  .+..+..      ..++...|++++.++ .+..+++|+..+.+++||.++                    
T Consensus       144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt--------------------  202 (735)
T KOG0308|consen  144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRT--------------------  202 (735)
T ss_pred             EEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEecccc--------------------
Confidence            99999772  3332221      127889999999998 889999999999999999999                    


Q ss_pred             ceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                         ...+..+.+|...|.++..+  |..+++++.||+|++||+....         ++..+..|...++++..+|+-  .
T Consensus       203 ---~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr---------Cl~T~~vH~e~VWaL~~~~sf--~  268 (735)
T KOG0308|consen  203 ---CKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR---------CLATYIVHKEGVWALQSSPSF--T  268 (735)
T ss_pred             ---ccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccc---------eeeeEEeccCceEEEeeCCCc--c
Confidence               66688889999999999886  8999999999999999998554         788899999999999999887  6


Q ss_pred             eEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          230 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+++|+.||.|..=|+++... .....   ....+|..+..+...+-+-+++.|+.|+-|..++
T Consensus       269 ~vYsG~rd~~i~~Tdl~n~~~-~tlic---k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  269 HVYSGGRDGNIYRTDLRNPAK-STLIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             eEEecCCCCcEEecccCCchh-heEee---cCCCchhhhhhccccCCceeeeccccceecCCcc
Confidence            899999999999999998532 22222   1224577777765444446677888888887653

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.1e-30  Score=203.16  Aligned_cols=242  Identities=16%  Similarity=0.300  Sum_probs=190.5

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc----ccceecc---cCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVG---HGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      ...++|+..  ++-. .++.++.. .++||......    +...++.   -.-.+..+.|.....++||+++..|.|.+|
T Consensus        40 ~~~nAIs~n--r~~~-qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vW  115 (839)
T KOG0269|consen   40 AKANAISVN--RDIN-QIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVW  115 (839)
T ss_pred             cccceEeec--CCcc-eeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEE
Confidence            445566665  6665 55555543 67888765432    1111111   112456788987788999999999999999


Q ss_pred             EcCC---CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           82 NVQT---GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        82 d~~~---~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      |+..   .+.+..|.   .|+..++++.|++...++|++|+.||.|++||++.                       ....
T Consensus       116 dlnk~~rnk~l~~f~---EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-----------------------~~S~  169 (839)
T KOG0269|consen  116 DLNKSIRNKLLTVFN---EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-----------------------KKSK  169 (839)
T ss_pred             ecCccccchhhhHhh---hhccceeeeeeccCCccEEEecCCCceEEEEeeec-----------------------cccc
Confidence            9987   44445555   79999999999999999999999999999999998                       4445


Q ss_pred             EEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590          159 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                      ..+.+....|..+.|+   ++.|+++...|.+++||+|...+        ....+..|.+++.++.|+|++  .+||+|+
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r--------~~~k~~AH~GpV~c~nwhPnr--~~lATGG  239 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR--------CEKKLTAHNGPVLCLNWHPNR--EWLATGG  239 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh--------HHHHhhcccCceEEEeecCCC--ceeeecC
Confidence            5666678889999997   78999999999999999998654        677788999999999999977  7999999


Q ss_pred             CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEec--cCCcEEEEecCC
Q 022590          236 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCC--EDGAIWRWDAIP  293 (294)
Q Consensus       236 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~--~dg~i~vw~~~~  293 (294)
                      .|+.|+|||..+.+......+.   ...+|..++|-|+.+ .||+++  .|-.|+|||++-
T Consensus       240 RDK~vkiWd~t~~~~~~~~tIn---Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR  297 (839)
T KOG0269|consen  240 RDKMVKIWDMTDSRAKPKHTIN---TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR  297 (839)
T ss_pred             CCccEEEEeccCCCccceeEEe---ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence            9999999999987665555553   347899999999875 466665  477899999974

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=9.8e-29  Score=197.26  Aligned_cols=249  Identities=16%  Similarity=0.169  Sum_probs=203.5

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      .|....+.++|.  |+|+ +|++++.||.|++|+.... +...++..+...|.+++...   .+|++|+.+++|.+|.+.
T Consensus        11 aht~G~t~i~~d--~~ge-fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fp   84 (933)
T KOG1274|consen   11 AHTGGLTLICYD--PDGE-FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFP   84 (933)
T ss_pred             hccCceEEEEEc--CCCC-EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCC
Confidence            688889999998  9999 9999999999999997665 44555555888899998754   589999999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      +++.-..+.   ..+-++.+++|+. ++.+++.|+.|-.|++-++..                       ......+.+|
T Consensus        85 s~~~~~iL~---Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D-----------------------~s~~~~lrgh  137 (933)
T KOG1274|consen   85 SGEEDTILA---RFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDD-----------------------SSQEKVLRGH  137 (933)
T ss_pred             CCCccceee---eeeccceEEEEec-CCcEEEeecCceeEEEEeccc-----------------------cchheeeccc
Confidence            887655554   3677899999998 999999999999999999988                       4557788999


Q ss_pred             CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      .++|.++.|+  +++||+.+.||.+++||+.++................. ...+..++|+|++  ..++....|+.|++
T Consensus       138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~-s~i~~~~aW~Pk~--g~la~~~~d~~Vkv  214 (933)
T KOG1274|consen  138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFIL-SRICTRLAWHPKG--GTLAVPPVDNTVKV  214 (933)
T ss_pred             CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccc-cceeeeeeecCCC--CeEEeeccCCeEEE
Confidence            9999999998  88999999999999999998764332221111111111 3456778999997  46888888999999


Q ss_pred             EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |+....+.....+..  .+...+..++|+|+|+|||+++.||.|.|||.+
T Consensus       215 y~r~~we~~f~Lr~~--~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  215 YSRKGWELQFKLRDK--LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             EccCCceeheeeccc--ccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            999998755544444  444559999999999999999999999999987

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.8e-29  Score=189.67  Aligned_cols=245  Identities=17%  Similarity=0.247  Sum_probs=187.1

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc------------ceecccCcceEEEEeCCCCCceEEEeeC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH------------KSFVGHGDSINEIRTQPLKPSLVVSASK   74 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~   74 (294)
                      ....|++++|+  +.|. .|++.+.....+|+|-+..+..            ...++|...++|.+|+|.+...+++++.
T Consensus       213 E~h~i~sl~ys--~Tg~-~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~  289 (641)
T KOG0772|consen  213 ETHQINSLQYS--VTGD-QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY  289 (641)
T ss_pred             cccccceeeec--CCCC-eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC
Confidence            34689999998  7888 6666667778999996543222            2346899999999999988889999999


Q ss_pred             CCcEEEEEcCCCc-eEEEeec--cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           75 DESVRLWNVQTGI-CILIFAG--AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        75 dg~i~vwd~~~~~-~~~~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      ||++|+||+...+ .+..+..  ..+..-+++.++|+| ++..||+|+.||.|.+|+.+....                 
T Consensus       290 DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v-----------------  351 (641)
T KOG0772|consen  290 DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTV-----------------  351 (641)
T ss_pred             CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCccc-----------------
Confidence            9999999997654 3333332  234556789999999 889999999999999999865221                 


Q ss_pred             ceeeeceEEeecCCC--ceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec--CCCCeeEEEEccc
Q 022590          152 KYVQFPVFIASVHSN--YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCD  225 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~  225 (294)
                         ......-..|..  .|+|+.|+  |++|++-+.|+++++||++..+..        +.....  ..-+-+.++|||+
T Consensus       352 ---~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp--------L~~~tgL~t~~~~tdc~FSPd  420 (641)
T KOG0772|consen  352 ---RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP--------LNVRTGLPTPFPGTDCCFSPD  420 (641)
T ss_pred             ---ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc--------hhhhcCCCccCCCCccccCCC
Confidence               223445566776  89999997  999999999999999999987642        222111  1234556899999


Q ss_pred             CCcceEEEEc------CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEE
Q 022590          226 FHYNAAAIGN------REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW  289 (294)
Q Consensus       226 ~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw  289 (294)
                      .  .++++|.      ..|.+.+||..+.+.+  .++.  -....|..+.|+|.-+.|+.|+.||.++||
T Consensus       421 ~--kli~TGtS~~~~~~~g~L~f~d~~t~d~v--~ki~--i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  421 D--KLILTGTSAPNGMTAGTLFFFDRMTLDTV--YKID--ISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             c--eEEEecccccCCCCCceEEEEeccceeeE--EEec--CCCceEEEEeecchhhheeeecCCCceEEE
Confidence            8  5888875      3578999999887643  3333  224679999999998899999999999987

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=7.8e-29  Score=194.01  Aligned_cols=250  Identities=14%  Similarity=0.239  Sum_probs=205.8

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .|+..|.+++++  .+.. .+++| ..+.+++|+.++.++++++..  +-+.+..|.| +++++++|...|.+.++|+.+
T Consensus       371 GHR~dVRsl~vS--~d~~-~~~Sg-a~~SikiWn~~t~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  371 GHRSDVRSLCVS--SDSI-LLASG-AGESIKIWNRDTLKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             cchhheeEEEee--cCce-eeeec-CCCcEEEEEccCcceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeeh
Confidence            899999999998  5554 44554 567999999999999999974  4889999999 889999999999999999999


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ...+..++   +|.+.|+.++.+| ++..+++|+.|.+|++||+.-.....          .. ..+...........-+
T Consensus       444 ~~l~Eti~---AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~----------gt-~~k~lsl~~~rtLel~  508 (888)
T KOG0306|consen  444 ASLVETIR---AHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVP----------GT-QKKVLSLKHTRTLELE  508 (888)
T ss_pred             hhhhhhhh---ccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccC----------cc-cceeeeeccceEEecc
Confidence            99888888   7999999999999 88899999999999999987632100          00 0000111111222345


Q ss_pred             Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590          166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~  243 (294)
                      +.|.|+.++  +.+|+++--|.++++|-+.+.+         ..-.+-+|.-||.++.++|++  .++++|+.|..|++|
T Consensus       509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---------FflsLYGHkLPV~smDIS~DS--klivTgSADKnVKiW  577 (888)
T KOG0306|consen  509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---------FFLSLYGHKLPVLSMDISPDS--KLIVTGSADKNVKIW  577 (888)
T ss_pred             ccEEEEEEcCCCcEEEEEeccCeEEEEEeccee---------eeeeecccccceeEEeccCCc--CeEEeccCCCceEEe
Confidence            678888887  8899999999999999998654         567778899999999999999  599999999999999


Q ss_pred             eccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      -++-+.+  -..+-  +|...|.++.|-|....++++|.|+.|+-||-+
T Consensus       578 GLdFGDC--HKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~  622 (888)
T KOG0306|consen  578 GLDFGDC--HKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE  622 (888)
T ss_pred             ccccchh--hhhhh--cccCceeEEEEcccceeEEEecCcceEEeechh
Confidence            9988863  33333  788999999999999999999999999999853

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.97  E-value=4e-29  Score=175.63  Aligned_cols=214  Identities=20%  Similarity=0.278  Sum_probs=174.8

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc----------c-----ceecccCcceEEEEeCCCCCceE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL----------H-----KSFVGHGDSINEIRTQPLKPSLV   69 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----------~-----~~~~~h~~~v~~~~~~~~~~~~l   69 (294)
                      ..|.+.|+++.... ..|+ |+++|+.||.|.+||+++...          .     ..-.+|.-.|.++.|-|.+...+
T Consensus        40 r~HgGsvNsL~id~-tegr-ymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDL-TEGR-YMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             ccCCCccceeeecc-ccce-EEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            47999999999984 4677 999999999999999975421          0     11235888999999999998999


Q ss_pred             EEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC--CCceEEeeecCCcEEEEeccccccccccceeecCCCC
Q 022590           70 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS--DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS  147 (294)
Q Consensus        70 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  147 (294)
                      .+++.|.+++|||..+-+....|.    ..+.|++-+++|-  ...++|+|..|-.|++.|+..                
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~----me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S----------------  177 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFK----MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS----------------  177 (397)
T ss_pred             ecccccceEEEeecccceeeEEee----cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC----------------
Confidence            999999999999999999988887    7888999999883  235788888999999999998                


Q ss_pred             CCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCC------CCCCCceeeeeeecCCCCee
Q 022590          148 KFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQS------PGEGTADILQKYPVPECDIW  218 (294)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~------~~~~~~~~~~~~~~~~~~i~  218 (294)
                             ......+.+|.+.|.++.|+   .-.|++|+.||.|++||++.....      ......+.++....|.+.+.
T Consensus       178 -------Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn  250 (397)
T KOG4283|consen  178 -------GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN  250 (397)
T ss_pred             -------CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee
Confidence                   55677899999999999998   346889999999999999865210      00112223344566778899


Q ss_pred             EEEEcccCCcceEEEEcCCCeEEEEeccCCC
Q 022590          219 FIKFSCDFHYNAAAIGNREGKIFVWELQSSP  249 (294)
Q Consensus       219 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  249 (294)
                      .++|+.++  .++++.+.|..+++|+..+++
T Consensus       251 gla~tSd~--~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  251 GLAWTSDA--RYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             eeeecccc--hhhhhccCccceEEeecccCc
Confidence            99999999  689999999999999998765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=5.5e-30  Score=181.20  Aligned_cols=214  Identities=21%  Similarity=0.285  Sum_probs=167.1

Q ss_pred             ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC------------Cc---eEEEeeccCCCCCceeEEEEecCC
Q 022590           47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT------------GI---CILIFAGAGGHRNEVLSVDFHPSD  111 (294)
Q Consensus        47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~------------~~---~~~~~~~~~~~~~~v~~l~~~~~~  111 (294)
                      ..+..|..++.+.+|+| +|.++++|+.|..|+|.|++.            +.   .-..+..+..|..+|+++.|+| .
T Consensus       106 ~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-r  183 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-R  183 (430)
T ss_pred             EEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-h
Confidence            34567999999999999 999999999999999999872            11   0012223337999999999999 8


Q ss_pred             CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEE
Q 022590          112 IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVL  189 (294)
Q Consensus       112 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~i  189 (294)
                      ..+|++|+.|++|++||+.....                     +..........+|.+++|+  |+++++|..-..+++
T Consensus       184 e~ILiS~srD~tvKlFDfsK~sa---------------------KrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl  242 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSA---------------------KRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL  242 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHH---------------------HHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence            89999999999999999987221                     0111112233456667765  999999999999999


Q ss_pred             ecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEE
Q 022590          190 WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTA  269 (294)
Q Consensus       190 wd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~  269 (294)
                      ||+++-+....      ...-..|...|+++.+++.+  .+.++++.||.|++||--++++  +..+........|.+..
T Consensus       243 Ydv~T~Qcfvs------anPd~qht~ai~~V~Ys~t~--~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~  312 (430)
T KOG0640|consen  243 YDVNTYQCFVS------ANPDDQHTGAITQVRYSSTG--SLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAV  312 (430)
T ss_pred             EeccceeEeee------cCcccccccceeEEEecCCc--cEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEE
Confidence            99998654211      11234567889999999999  6899999999999999888764  34444334457899999


Q ss_pred             EccCCCEEEEeccCCcEEEEecCC
Q 022590          270 MSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       270 ~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |..+|+|+++.+.|..+++|++.+
T Consensus       313 Ftkn~kyiLsSG~DS~vkLWEi~t  336 (430)
T KOG0640|consen  313 FTKNGKYILSSGKDSTVKLWEIST  336 (430)
T ss_pred             EccCCeEEeecCCcceeeeeeecC
Confidence            999999999999999999999865

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.97  E-value=4.9e-29  Score=191.70  Aligned_cols=257  Identities=18%  Similarity=0.286  Sum_probs=183.2

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce--ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .|...|..+.|.  | |+..|++++.|.++++||+++.++...  +.+|...|.+++|.|.+...|++|+.||.|.|||+
T Consensus        98 aH~nAifDl~wa--p-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~  174 (720)
T KOG0321|consen   98 AHKNAIFDLKWA--P-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC  174 (720)
T ss_pred             cccceeEeeccC--C-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence            799999999998  6 555999999999999999999988776  88999999999999999999999999999999998


Q ss_pred             CCCce--E----------------------EEeeccCCCCCceeE---EEEecCCCceEEeeec-CCcEEEEeccccccc
Q 022590           84 QTGIC--I----------------------LIFAGAGGHRNEVLS---VDFHPSDIYRIASCGM-DNTVKIWSMKEFWTY  135 (294)
Q Consensus        84 ~~~~~--~----------------------~~~~~~~~~~~~v~~---l~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~  135 (294)
                      +-...  .                      +.......+...|.+   +.+.. |+..||+++. |+.|+|||++.....
T Consensus       175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccc
Confidence            63320  0                      001111134444444   33444 7788998887 999999999985433


Q ss_pred             cccceeecCCCCCCCCceeeeceEEeecC---CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee
Q 022590          136 VEKSFTWTDLPSKFPTKYVQFPVFIASVH---SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY  210 (294)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  210 (294)
                      ....               ......+..|   .-.+.++..+  |.+|++.+.|+.|++|++......+       ...+
T Consensus       254 ~r~e---------------p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP-------~~~~  311 (720)
T KOG0321|consen  254 YRQE---------------PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP-------VAEF  311 (720)
T ss_pred             cccC---------------CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc-------hhhc
Confidence            2221               0111111112   2234444444  7888888889999999998765422       2222


Q ss_pred             ecCCC--CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEE
Q 022590          211 PVPEC--DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIW  287 (294)
Q Consensus       211 ~~~~~--~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~  287 (294)
                      .++..  --..-..+|++  .++++|+.|...++|.+.+.+......+   +|...|++++|.|.. .-++++++|..++
T Consensus       312 sg~~~~sf~vks~lSpd~--~~l~SgSsd~~ayiw~vs~~e~~~~~l~---Ght~eVt~V~w~pS~~t~v~TcSdD~~~k  386 (720)
T KOG0321|consen  312 SGKLNSSFYVKSELSPDD--CSLLSGSSDEQAYIWVVSSPEAPPALLL---GHTREVTTVRWLPSATTPVATCSDDFRVK  386 (720)
T ss_pred             cCcccceeeeeeecCCCC--ceEeccCCCcceeeeeecCccCChhhhh---CcceEEEEEeeccccCCCceeeccCcceE
Confidence            22111  11123467888  5899999999999999998764333333   777889999998843 3467779999999


Q ss_pred             EEecCC
Q 022590          288 RWDAIP  293 (294)
Q Consensus       288 vw~~~~  293 (294)
                      +|++.+
T Consensus       387 iW~l~~  392 (720)
T KOG0321|consen  387 IWRLSN  392 (720)
T ss_pred             EEeccC
Confidence            999853

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=2.2e-29  Score=199.22  Aligned_cols=210  Identities=16%  Similarity=0.295  Sum_probs=167.1

Q ss_pred             CCcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            1 MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         1 ~~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      +|-+.+|.+.|..|+|+  .++  +|++++.|.+|+||++...++++.|. |.+-|+|++|+|.|.+++++|+-||.|||
T Consensus       362 ~~ef~GHt~DILDlSWS--Kn~--fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRi  436 (712)
T KOG0283|consen  362 FCEFKGHTADILDLSWS--KNN--FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRL  436 (712)
T ss_pred             hhhhhccchhheecccc--cCC--eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEE
Confidence            35567999999999997  443  89999999999999999999999888 99999999999999999999999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      |++...+.+.-..    -..-|++++|.| +|+..+.|+.+|.+++|+....+......+....              ..
T Consensus       437 WsI~d~~Vv~W~D----l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~--------------~K  497 (712)
T KOG0283|consen  437 WSISDKKVVDWND----LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN--------------KK  497 (712)
T ss_pred             eecCcCeeEeehh----hhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEeecc--------------Cc
Confidence            9998777665554    558899999999 8999999999999999999985433322221110              01


Q ss_pred             eecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC--CCeeEEEEcccCCcceEEEEc
Q 022590          161 ASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       161 ~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~  235 (294)
                      -..|. .|+.+.|.   .+.+++.+.|..|||||.+...         ++..+++..  ..-....|+.+|  .+|++++
T Consensus       498 k~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~---------lv~KfKG~~n~~SQ~~Asfs~Dg--k~IVs~s  565 (712)
T KOG0283|consen  498 KKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD---------LVHKFKGFRNTSSQISASFSSDG--KHIVSAS  565 (712)
T ss_pred             cccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh---------hhhhhcccccCCcceeeeEccCC--CEEEEee
Confidence            11233 78888886   4468888999999999997554         344444322  223456788888  5899999


Q ss_pred             CCCeEEEEecc
Q 022590          236 REGKIFVWELQ  246 (294)
Q Consensus       236 ~dg~i~i~d~~  246 (294)
                      +|..|++|+..
T Consensus       566 eDs~VYiW~~~  576 (712)
T KOG0283|consen  566 EDSWVYIWKND  576 (712)
T ss_pred             cCceEEEEeCC
Confidence            99999999973

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=4.3e-28  Score=168.00  Aligned_cols=210  Identities=17%  Similarity=0.258  Sum_probs=174.9

Q ss_pred             eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEE
Q 022590           48 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW  127 (294)
Q Consensus        48 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~w  127 (294)
                      .+++|+.+++.+.++. ++.+|++++.|.+..||--.+|+.+..+.   +|.+.|+|+..+. +...+++|+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~---GHtGavW~~Did~-~s~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYD---GHTGAVWCCDIDW-DSKHLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeec---CCCceEEEEEecC-CcceeeeccccceeEEE
Confidence            4688999999999999 99999999999999999999999999999   8999999999997 88899999999999999


Q ss_pred             eccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-----CCeEEEecCCCCCCCCC
Q 022590          128 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-----DNEIVLWEPKMKEQSPG  200 (294)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-----d~~i~iwd~~~~~~~~~  200 (294)
                      |+.+++.                       +.. ...+.+|..+.|+  |++++.+..     .+.|.++|++.....  
T Consensus        80 Dv~tGk~-----------------------la~-~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~--  133 (327)
T KOG0643|consen   80 DVETGKQ-----------------------LAT-WKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD--  133 (327)
T ss_pred             EcCCCcE-----------------------EEE-eecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh--
Confidence            9998532                       222 2346678888887  666666543     367999999865421  


Q ss_pred             CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe
Q 022590          201 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC  280 (294)
Q Consensus       201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  280 (294)
                      .....++..++.+...++.+.|.|.+  .+|++|.++|.|.+||+++++. .+....  .|...|+.|+++||..+++++
T Consensus       134 ~~s~ep~~kI~t~~skit~a~Wg~l~--~~ii~Ghe~G~is~~da~~g~~-~v~s~~--~h~~~Ind~q~s~d~T~FiT~  208 (327)
T KOG0643|consen  134 IDSEEPYLKIPTPDSKITSALWGPLG--ETIIAGHEDGSISIYDARTGKE-LVDSDE--EHSSKINDLQFSRDRTYFITG  208 (327)
T ss_pred             hcccCceEEecCCccceeeeeecccC--CEEEEecCCCcEEEEEcccCce-eeechh--hhccccccccccCCcceEEec
Confidence            11233577788888999999999999  5999999999999999999853 222323  677799999999999999999


Q ss_pred             ccCCcEEEEecCC
Q 022590          281 CEDGAIWRWDAIP  293 (294)
Q Consensus       281 ~~dg~i~vw~~~~  293 (294)
                      +.|.+-++||+.+
T Consensus       209 s~Dttakl~D~~t  221 (327)
T KOG0643|consen  209 SKDTTAKLVDVRT  221 (327)
T ss_pred             ccCccceeeeccc
Confidence            9999999999864

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.97  E-value=7.7e-29  Score=192.24  Aligned_cols=238  Identities=18%  Similarity=0.304  Sum_probs=200.8

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc--ceecccCcceEE-EEeCCCCCceEEEeeCCCcE
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH--KSFVGHGDSINE-IRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~h~~~v~~-~~~~~~~~~~l~s~~~dg~i   78 (294)
                      |.+..|+..|..++..   ++. .+++++.||++++|+-..++..  ..+.+|.+-|.. +++.+.++..+++|+.|.+|
T Consensus         8 ~~l~gH~~DVr~v~~~---~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    8 HELEGHKSDVRAVAVT---DGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             EEeccCccchheeEec---CCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            4567999999999874   344 7999999999999997655543  346677787777 88876456679999999999


Q ss_pred             EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      .+|...+..++..+.   +|.+.|.++.... ++. +++|+.|.++++|...+.                         .
T Consensus        84 ~v~~~~~~~P~~~Lk---gH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~~l-------------------------~  133 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTLK---GHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIGEL-------------------------V  133 (745)
T ss_pred             EEEecCCCCchhhhh---ccccceeeeecCC-cCc-eEecccccceEEecchhh-------------------------h
Confidence            999999999999988   7999999999775 555 999999999999998872                         3


Q ss_pred             EEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          159 FIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      ..+.+|+..|.++..- .+.+++|+.|.+|++|.-.+           .++.+.+|...|..+++-++.   .+++++.|
T Consensus       134 ~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~~-----------~l~tf~gHtD~VRgL~vl~~~---~flScsND  199 (745)
T KOG0301|consen  134 YSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGGT-----------LLKTFSGHTDCVRGLAVLDDS---HFLSCSND  199 (745)
T ss_pred             cccCCcchheeeeeecCCCcEEeccCcceeeeccCCc-----------hhhhhccchhheeeeEEecCC---CeEeecCC
Confidence            4588999999988774 67999999999999998643           678889999999999999986   58999999


Q ss_pred             CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |.|++|++...   ...+..  +|...|.++...+++..++++++|++++||+..
T Consensus       200 g~Ir~w~~~ge---~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  200 GSIRLWDLDGE---VLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ceEEEEeccCc---eeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            99999999443   333333  888999999988889999999999999999864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4e-28  Score=172.35  Aligned_cols=255  Identities=18%  Similarity=0.189  Sum_probs=185.2

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc------------------------------------c
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL------------------------------------H   46 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------------------------------------~   46 (294)
                      .|+.|.+.|++++|+  .||+ +||+.+.|++|++|++++-..                                    +
T Consensus        81 ~LKgH~~~vt~~~Fs--SdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFS--SDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhccCCceeeeEEc--CCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence            578999999999998  8999 999999999999999864210                                    0


Q ss_pred             cee-----------------------cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590           47 KSF-----------------------VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  103 (294)
Q Consensus        47 ~~~-----------------------~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  103 (294)
                      ..+                       +.|.-.|-.+-... ++.+|++++.|..|.+|++. |+.+..+..   ....-+
T Consensus       158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idt---nq~~n~  232 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDT---NQSSNY  232 (420)
T ss_pred             EEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecc---cccccc
Confidence            000                       01223344444444 67789999999999999997 888888773   555667


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEe
Q 022590          104 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK  181 (294)
Q Consensus       104 ~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  181 (294)
                      ..+.+| +++++++++..--+++|.+--.+...               ......+..+.+|...|..++|+  ...+++.
T Consensus       233 ~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~---------------fqev~rvf~LkGH~saV~~~aFsn~S~r~vtv  296 (420)
T KOG2096|consen  233 DAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGT---------------FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTV  296 (420)
T ss_pred             ceeeCC-CCcEEEEecCCCCceEEEEEeccCcc---------------hhhhhhhheeccchhheeeeeeCCCcceeEEE
Confidence            889999 99999999999999999875421110               01134577899999999999997  7799999


Q ss_pred             eCCCeEEEecCCCCCCCCCCCCceeeeee----ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590          182 SVDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS  257 (294)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  257 (294)
                      +.||++++||..-.......  ...+...    .........+.++|+++  .|+.+ ....+++|..++++......  
T Consensus       297 SkDG~wriwdtdVrY~~~qD--pk~Lk~g~~pl~aag~~p~RL~lsP~g~--~lA~s-~gs~l~~~~se~g~~~~~~e--  369 (420)
T KOG2096|consen  297 SKDGKWRIWDTDVRYEAGQD--PKILKEGSAPLHAAGSEPVRLELSPSGD--SLAVS-FGSDLKVFASEDGKDYPELE--  369 (420)
T ss_pred             ecCCcEEEeeccceEecCCC--chHhhcCCcchhhcCCCceEEEeCCCCc--EEEee-cCCceEEEEcccCccchhHH--
Confidence            99999999998754321111  1112222    11223344799999994  55544 45679999999876433332  


Q ss_pred             ccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          258 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       258 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                       ..|...|.+++|+++|+++++++ |..+++..
T Consensus       370 -~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  370 -DIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             -HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence             26778999999999999999996 66777765

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=2.3e-30  Score=201.57  Aligned_cols=233  Identities=20%  Similarity=0.337  Sum_probs=204.2

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .|...|.++..-  ..++ .+++|+.|..+-+|.......+..+.+|..+|.++.|++ ...+|++|+.+|+|++||++.
T Consensus        26 ~hsaav~~lk~~--~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   26 AHSAAVGCLKIR--KSSR-SLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhceeeee--ccce-eeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhh
Confidence            567788888874  5666 899999999999999988777888999999999999999 888999999999999999999


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ++.++.+.   +|...+..+.|+| -+.+++.|+.|+.+++||++.                       ..+...+.+|.
T Consensus       102 Ak~vrtLt---gh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk-----------------------~Gc~~~~~s~~  154 (825)
T KOG0267|consen  102 AKIVRTLT---GHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRK-----------------------KGCSHTYKSHT  154 (825)
T ss_pred             hhhhhhhh---ccccCcceeeecc-ceEEeccccccccceehhhhc-----------------------cCceeeecCCc
Confidence            99888887   7999999999999 888899999999999999997                       55677788899


Q ss_pred             Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590          166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~  243 (294)
                      ..+.++.|+  |.+++.++.|..+++||...++         ....++.|++.+..+.|+|..  .+++.|+.|+.+++|
T Consensus       155 ~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---------~~~ef~~~e~~v~sle~hp~e--~Lla~Gs~d~tv~f~  223 (825)
T KOG0267|consen  155 RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---------LSKEFKSHEGKVQSLEFHPLE--VLLAPGSSDRTVRFW  223 (825)
T ss_pred             ceeEEEeecCCCceeeccCCcceeeeecccccc---------cccccccccccccccccCchh--hhhccCCCCceeeee
Confidence            999999997  8899999999999999998776         678888899999999999988  688999999999999


Q ss_pred             eccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590          244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                      |+++-+  .+....  .....|.+.+|+|+++.+++|..+.
T Consensus       224 dletfe--~I~s~~--~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  224 DLETFE--VISSGK--PETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             ccceeE--EeeccC--CccCCceeeeecCCceeeecCchhh
Confidence            999764  222222  3356799999999999999886654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4.4e-28  Score=186.71  Aligned_cols=232  Identities=16%  Similarity=0.200  Sum_probs=190.7

Q ss_pred             EEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEe
Q 022590           13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF   92 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~   92 (294)
                      -++|+  ..+  .||+|.. ..|++|+..+++.......+...|+++.|++ ++.+|+.|..+|.|.|||..+.+.+..+
T Consensus       182 lldWs--s~n--~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~  255 (484)
T KOG0305|consen  182 LLDWS--SAN--VLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTL  255 (484)
T ss_pred             Hhhcc--cCC--eEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccc
Confidence            35676  333  5777654 4899999999987666666689999999999 9999999999999999999998888888


Q ss_pred             eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecc
Q 022590           93 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR  172 (294)
Q Consensus        93 ~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  172 (294)
                      ..  .|...|-+++|.   ...+.+|+.|+.|..+|++.....                      ...+.+|...|..+.
T Consensus       256 ~~--~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~----------------------~~~~~~H~qeVCgLk  308 (484)
T KOG0305|consen  256 RG--SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHV----------------------VSTLQGHRQEVCGLK  308 (484)
T ss_pred             cC--CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhh----------------------hhhhhcccceeeeeE
Confidence            72  299999999996   577999999999999999983211                      113788999999999


Q ss_pred             ee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE--cCCCeEEEEeccCC
Q 022590          173 WL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG--NREGKIFVWELQSS  248 (294)
Q Consensus       173 ~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~  248 (294)
                      |+  +.++++|+.|+.+.|||....+         +...+..|...|.+++|+|-.. .+||+|  +.|++|++||..++
T Consensus       309 ws~d~~~lASGgnDN~~~Iwd~~~~~---------p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g  378 (484)
T KOG0305|consen  309 WSPDGNQLASGGNDNVVFIWDGLSPE---------PKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTG  378 (484)
T ss_pred             ECCCCCeeccCCCccceEeccCCCcc---------ccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCC
Confidence            97  8999999999999999995443         6778888999999999999887 588885  47999999999988


Q ss_pred             CceeeeeccccccCCCeEEEEEccCCCEEEE--eccCCcEEEEecC
Q 022590          249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILS--CCEDGAIWRWDAI  292 (294)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~vw~~~  292 (294)
                      +.  +..+   .....|.+|.|++..+-|++  |..++.|.||++.
T Consensus       379 ~~--i~~v---dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p  419 (484)
T KOG0305|consen  379 AR--IDSV---DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP  419 (484)
T ss_pred             cE--eccc---ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence            63  2222   34478999999998866665  4567789999974

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=6.4e-28  Score=171.02  Aligned_cols=243  Identities=15%  Similarity=0.221  Sum_probs=185.0

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL   90 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~   90 (294)
                      -.|+.|+  +.|. +||+|+.||.|.|||+.|...-+.+.+|..+|++++|++ ++++|++++.|..|.+||+..|.+++
T Consensus        26 a~~~~Fs--~~G~-~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFS--RWGD-YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEec--cCcc-eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCcee
Confidence            3455555  9998 999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC-cee
Q 022590           91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVD  169 (294)
Q Consensus        91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~  169 (294)
                      .+.    ..++|+...|+|.+.+..++.-.+..-.+-++..........                   . -.+..+ .-.
T Consensus       102 rir----f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~-------------------d-~d~dln~sas  157 (405)
T KOG1273|consen  102 RIR----FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK-------------------D-DDGDLNSSAS  157 (405)
T ss_pred             EEE----ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC-------------------C-Cccccccccc
Confidence            998    889999999999777777777666666666666421110000                   0 000000 111


Q ss_pred             eccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC-CCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          170 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       170 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      +..|+  |+++++|...|.+.++|..+.+         ++..+.... ..|..+.++..+  .+|+.-+.|..||.|+++
T Consensus       158 ~~~fdr~g~yIitGtsKGkllv~~a~t~e---------~vas~rits~~~IK~I~~s~~g--~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  158 HGVFDRRGKYIITGTSKGKLLVYDAETLE---------CVASFRITSVQAIKQIIVSRKG--RFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             cccccCCCCEEEEecCcceEEEEecchhe---------eeeeeeechheeeeEEEEeccC--cEEEEecCCceEEEEehh
Confidence            12343  9999999999999999999765         444554444 678889999988  689999999999999987


Q ss_pred             C-------CCceeeeeccccccCCCeEEEEEccCCCEEEEecc-CCcEEEEecC
Q 022590          247 S-------SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAI  292 (294)
Q Consensus       247 ~-------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~  292 (294)
                      .       +++....++...-.+.+-.+++|+.+|.|+..++. ...++||.-.
T Consensus       227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~  280 (405)
T KOG1273|consen  227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKS  280 (405)
T ss_pred             hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecC
Confidence            3       12222233332234456788999999999988764 3469999864

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=4.2e-28  Score=179.99  Aligned_cols=230  Identities=18%  Similarity=0.238  Sum_probs=184.4

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC---
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---   84 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~---   84 (294)
                      .++|.+++-+  |+|. +|+.|+..|.|++|.+.+|.++..+.+|-..|+|+.|+. |+.+|++|+.||.|.+|.+.   
T Consensus        81 Pg~v~al~s~--n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv  156 (476)
T KOG0646|consen   81 PGPVHALASS--NLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLV  156 (476)
T ss_pred             ccceeeeecC--CCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeec
Confidence            4778899887  8997 888888999999999999999999999999999999999 99999999999999999864   


Q ss_pred             ------CCceEEEeeccCCCCCceeEEEEecC-CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           85 ------TGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        85 ------~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                            +-++.+.|.   .|.-+|+++...+. -..+++|++.|.++++||+..+.                        
T Consensus       157 ~a~~~~~~~p~~~f~---~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~------------------------  209 (476)
T KOG0646|consen  157 SADNDHSVKPLHIFS---DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV------------------------  209 (476)
T ss_pred             ccccCCCccceeeec---cCcceeEEEEecCCCccceEEEecCCceEEEEEeccce------------------------
Confidence                  224455555   79999999998872 24679999999999999999842                        


Q ss_pred             eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCC-------CCCCCCceeeeeeecCCC--CeeEEEEcccC
Q 022590          158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ-------SPGEGTADILQKYPVPEC--DIWFIKFSCDF  226 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~  226 (294)
                      +......+..+.++..+  +..+++|+.+|.|.+.++.....       .........+..+.+|..  .|++++++-|+
T Consensus       210 LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg  289 (476)
T KOG0646|consen  210 LLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG  289 (476)
T ss_pred             eeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence            22233356677777776  78999999999999988765431       111223445666777777  99999999999


Q ss_pred             CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590          227 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (294)
                        ..|++|+.||.+++||+.+.+.  ++.+.  ...++|+.+.+.|-.
T Consensus       290 --tlLlSGd~dg~VcvWdi~S~Q~--iRtl~--~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  290 --TLLLSGDEDGKVCVWDIYSKQC--IRTLQ--TSKGPVTNLQINPLE  331 (476)
T ss_pred             --cEEEeeCCCCCEEEEecchHHH--HHHHh--hhccccceeEeeccc
Confidence              6999999999999999998863  33333  245789999986643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.2e-28  Score=199.96  Aligned_cols=230  Identities=20%  Similarity=0.290  Sum_probs=182.3

Q ss_pred             CCcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC------------------ccccceecccCcceEEEEeC
Q 022590            1 MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------------------EKLHKSFVGHGDSINEIRTQ   62 (294)
Q Consensus         1 ~~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------------------~~~~~~~~~h~~~v~~~~~~   62 (294)
                      +|.++.|.+.|+|+.|+  |||+ +||+|+.|+.|.||+...                  .+.+..+.+|...|..++|+
T Consensus        62 l~~m~~h~~sv~CVR~S--~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws  138 (942)
T KOG0973|consen   62 LCTMDDHDGSVNCVRFS--PDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS  138 (942)
T ss_pred             heeeccccCceeEEEEC--CCCC-eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccC
Confidence            57889999999999998  9999 999999999999999873                  13556788999999999999


Q ss_pred             CCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccc--c-
Q 022590           63 PLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK--S-  139 (294)
Q Consensus        63 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~-  139 (294)
                      | ++.+|++++.|++|.+||..+.+.+..+.   +|.+.|..+.|.| -+++|++-+.|++|++|++.+.......  . 
T Consensus       139 p-~~~~lvS~s~DnsViiwn~~tF~~~~vl~---~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf  213 (942)
T KOG0973|consen  139 P-DDSLLVSVSLDNSVIIWNAKTFELLKVLR---GHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPF  213 (942)
T ss_pred             C-CccEEEEecccceEEEEccccceeeeeee---cccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccch
Confidence            9 99999999999999999999998888888   7999999999999 9999999999999999997763221111  1 


Q ss_pred             -----------eeecCCCCCCC---------------CceeeeceEEeecCCCceeeccee-------cc----------
Q 022590          140 -----------FTWTDLPSKFP---------------TKYVQFPVFIASVHSNYVDCNRWL-------GD----------  176 (294)
Q Consensus       140 -----------~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~~~~-------~~----------  176 (294)
                                 ..|.+......               .+........+.+|..++.++.|+       ..          
T Consensus       214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~  293 (942)
T KOG0973|consen  214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCY  293 (942)
T ss_pred             hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcc
Confidence                       11111110000               011112244678899999999996       11          


Q ss_pred             --eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590          177 --FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       177 --~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                        .+|+|+.|+.|.||.....+.        .+--.......|..++|+|+|  ..|++++.||.|.++.++..
T Consensus       294 y~i~AvgSqDrSlSVW~T~~~RP--------l~vi~~lf~~SI~DmsWspdG--~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  294 YCIAAVGSQDRSLSVWNTALPRP--------LFVIHNLFNKSIVDMSWSPDG--FSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             eEEEEEecCCccEEEEecCCCCc--------hhhhhhhhcCceeeeeEcCCC--CeEEEEecCCeEEEEEcchH
Confidence              688999999999999865442        233334456789999999999  57889999999999998764

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=5.9e-27  Score=166.02  Aligned_cols=239  Identities=18%  Similarity=0.262  Sum_probs=183.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeec--CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      -++-.+..++|. +++.  .++.++.  |.+|+..++.+.+.++-+.||...|++|+.+| .++.+++++.|++|++||+
T Consensus        54 skkyG~~~~~Ft-h~~~--~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDl  129 (311)
T KOG1446|consen   54 SKKYGVDLACFT-HHSN--TVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDL  129 (311)
T ss_pred             cccccccEEEEe-cCCc--eEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEe
Confidence            344566777887 3333  3555554  88999999999999999999999999999999 7799999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee-
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-  162 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  162 (294)
                      +..++...+.     ...-...+|.| .|.++|++.....|++||+|....                     .|...+. 
T Consensus       130 R~~~cqg~l~-----~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dk---------------------gPF~tf~i  182 (311)
T KOG1446|consen  130 RVKKCQGLLN-----LSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDK---------------------GPFTTFSI  182 (311)
T ss_pred             cCCCCceEEe-----cCCCcceeECC-CCcEEEEecCCCeEEEEEecccCC---------------------CCceeEcc
Confidence            9888877664     33345688999 999999998888999999998532                     1222222 


Q ss_pred             --cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC---CCCeeEEEEcccCCcceEEEEc
Q 022590          163 --VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP---ECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       163 --~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                        ......+.+.|+  |.+++.+...+.+++.|.-.+.         .+..+..+   ..-.-...|+|++  .++++|+
T Consensus       183 ~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---------~~~tfs~~~~~~~~~~~a~ftPds--~Fvl~gs  251 (311)
T KOG1446|consen  183 TDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---------VKSTFSGYPNAGNLPLSATFTPDS--KFVLSGS  251 (311)
T ss_pred             CCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---------EeeeEeeccCCCCcceeEEECCCC--cEEEEec
Confidence              335667788886  8999999999999999998776         33333333   2223567899999  5999999


Q ss_pred             CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          236 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       236 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      .||+|.+|+++++..+....-   .+.+++.++.|+|.-..++++  +..+-+|=.
T Consensus       252 ~dg~i~vw~~~tg~~v~~~~~---~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p  302 (311)
T KOG1446|consen  252 DDGTIHVWNLETGKKVAVLRG---PNGGPVSCVRFNPRYAMFVSA--SSNLVFWLP  302 (311)
T ss_pred             CCCcEEEEEcCCCcEeeEecC---CCCCCccccccCCceeeeeec--CceEEEEec
Confidence            999999999999874433332   267889999999987777766  445667743

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=9.6e-29  Score=182.31  Aligned_cols=209  Identities=18%  Similarity=0.299  Sum_probs=174.8

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .|.+.|.+++|+  ..-++.||+|+.|.+|++||+.++++..++..|.+.|.+++|+|..+..|++|+.|++|.+.|.+.
T Consensus       241 gHTdavl~Ls~n--~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  241 GHTDAVLALSWN--RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             cchHHHHHHHhc--cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            688899999998  445559999999999999999999999999999999999999998899999999999999999984


Q ss_pred             C-ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           86 G-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        86 ~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      . ..-..++    ..+.|-.++|.|.....++++..||+++-+|+|..                      ..++..+..|
T Consensus       319 ~~~s~~~wk----~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~----------------------~~~vwt~~AH  372 (463)
T KOG0270|consen  319 PSNSGKEWK----FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP----------------------GKPVWTLKAH  372 (463)
T ss_pred             ccccCceEE----eccceEEEEecCCCceeEEEecCCceEEeeecCCC----------------------CCceeEEEec
Confidence            3 2233344    66789999999988999999999999999999983                      4688999999


Q ss_pred             CCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          165 SNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       165 ~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      .+.|.+++++   .+++++++.|+.+++|++......       ........-+...+.++.|+-. ..++.|+..+.++
T Consensus       373 d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-------~v~~~~~~~~rl~c~~~~~~~a-~~la~GG~k~~~~  444 (463)
T KOG0270|consen  373 DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-------SVKEHSFKLGRLHCFALDPDVA-FTLAFGGEKAVLR  444 (463)
T ss_pred             cCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-------ccccccccccceeecccCCCcc-eEEEecCccceEE
Confidence            9999999997   789999999999999999765421       1111111223356677777765 4788899999999


Q ss_pred             EEeccCCCc
Q 022590          242 VWELQSSPP  250 (294)
Q Consensus       242 i~d~~~~~~  250 (294)
                      +||+.+..+
T Consensus       445 vwd~~~~~~  453 (463)
T KOG0270|consen  445 VWDIFTNSP  453 (463)
T ss_pred             EeecccChh
Confidence            999988753

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=4.4e-28  Score=166.54  Aligned_cols=200  Identities=20%  Similarity=0.338  Sum_probs=164.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      +|+.-|.+++|+  .|.+ +|++|+.+..+||||++.. .+...+.+|.+.|..+-|.. ..+.+++.+.|++||+||.+
T Consensus        98 ~hkhivk~~af~--~ds~-~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~r  173 (334)
T KOG0278|consen   98 EHKHIVKAVAFS--QDSN-YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHR  173 (334)
T ss_pred             hhhheeeeEEec--ccch-hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEec
Confidence            688889999997  7777 9999999999999999765 45678899999999999998 77888888999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      ++..++.+.    ...+|+++..++ ++.+|. -...+.|.+||...+......                        .-
T Consensus       174 Tgt~v~sL~----~~s~VtSlEvs~-dG~ilT-ia~gssV~Fwdaksf~~lKs~------------------------k~  223 (334)
T KOG0278|consen  174 TGTEVQSLE----FNSPVTSLEVSQ-DGRILT-IAYGSSVKFWDAKSFGLLKSY------------------------KM  223 (334)
T ss_pred             cCcEEEEEe----cCCCCcceeecc-CCCEEE-EecCceeEEeccccccceeec------------------------cC
Confidence            999999997    788999999998 888554 455789999999984322111                        11


Q ss_pred             CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeee-eecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      +..|.+.+.+  ...+++|+.|..++.||..+++.         +.. ..+|.++|.++.|+|+|  ...++|++||+|+
T Consensus       224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeE---------i~~~nkgh~gpVhcVrFSPdG--E~yAsGSEDGTir  292 (334)
T KOG0278|consen  224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEE---------IGSYNKGHFGPVHCVRFSPDG--ELYASGSEDGTIR  292 (334)
T ss_pred             ccccccccccCCCceEEecCcceEEEEEeccCCce---------eeecccCCCCceEEEEECCCC--ceeeccCCCceEE
Confidence            2223333332  67899999999999999999874         333 47888999999999999  6899999999999


Q ss_pred             EEeccCCCc
Q 022590          242 VWELQSSPP  250 (294)
Q Consensus       242 i~d~~~~~~  250 (294)
                      +|.....+.
T Consensus       293 lWQt~~~~~  301 (334)
T KOG0278|consen  293 LWQTTPGKT  301 (334)
T ss_pred             EEEecCCCc
Confidence            999987653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.1e-28  Score=164.56  Aligned_cols=217  Identities=21%  Similarity=0.268  Sum_probs=167.6

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCC-CceEEEeeCCCcE
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESV   78 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~i   78 (294)
                      ..|+.|++||..++|.-..-|. +||+++.||.|.||.-++++  ....+..|...|++++|.|.+ +-.|++++.||.|
T Consensus        50 ~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v  128 (299)
T KOG1332|consen   50 AELTGHSGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV  128 (299)
T ss_pred             eEecCCCCCeeEEeecccccCc-EeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence            3577999999999999433677 99999999999999988874  344567899999999999954 4578899999999


Q ss_pred             EEEEcCCCceEEEeeccCCCCCceeEEEEecCC--C-----------ceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590           79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD--I-----------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL  145 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~-----------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  145 (294)
                      .|.+.+....-..-+....|.-.|++++|.|..  +           ..|++|+.|..|++|+.....            
T Consensus       129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~------------  196 (299)
T KOG1332|consen  129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS------------  196 (299)
T ss_pred             EEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc------------
Confidence            999987652211112223799999999999931  2           569999999999999998731            


Q ss_pred             CCCCCCceeeeceEEeecCCCceeeccee------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590          146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF  219 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~  219 (294)
                               -.....+.+|.+.|+.++|.      ..++++++.||++.||..+......   ...++.   .....++.
T Consensus       197 ---------w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w---k~tll~---~f~~~~w~  261 (299)
T KOG1332|consen  197 ---------WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW---KKTLLE---EFPDVVWR  261 (299)
T ss_pred             ---------hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc---cccccc---cCCcceEE
Confidence                     11233478899999999996      3479999999999999887332211   111222   23567999


Q ss_pred             EEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590          220 IKFSCDFHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       220 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                      +.||+.|  ++|++++.|+.+.+|.-+..
T Consensus       262 vSWS~sG--n~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  262 VSWSLSG--NILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             EEEeccc--cEEEEecCCcEEEEEEeCCC
Confidence            9999999  69999999999999986543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=7.6e-28  Score=188.05  Aligned_cols=250  Identities=17%  Similarity=0.236  Sum_probs=194.8

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC--CCceEEEeeCCCcEEEEEcC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL--KPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~~dg~i~vwd~~   84 (294)
                      .+-.|.+++.+  |+|+ +||+|..-|+++||++.+.+....+.+|..+|.|+.|+..  ..++||+++.|..|.|+|+.
T Consensus       458 ~r~G~R~~~vS--p~gq-hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  458 SRFGFRALAVS--PDGQ-HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             cccceEEEEEC--CCcc-eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            34567888887  9999 9999999999999999999999999999999999999863  35689999999999999997


Q ss_pred             CCc-eEEEeeccCCCCCceeEEEEecCC-CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           85 TGI-CILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        85 ~~~-~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      ..- .+..+.   +|...|+++.|.-.+ +..+++++.|..|.+--.+....                  ....+.....
T Consensus       535 rny~l~qtld---~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~------------------g~~f~r~t~t  593 (1080)
T KOG1408|consen  535 RNYDLVQTLD---GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS------------------GRLFPRHTQT  593 (1080)
T ss_pred             cccchhhhhc---ccccceeEEEEeecCCceEEEeccCchhhheehhccccC------------------ceeccccccc
Confidence            553 444555   799999999998733 26788999998776433222000                  0011111122


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      .....+..++.+  ..++++++.|+.|+|||+.++++      .+.+..-..+++....+...|.+  .|+++.+.|.++
T Consensus       594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq------~k~FKgs~~~eG~lIKv~lDPSg--iY~atScsdktl  665 (1080)
T KOG1408|consen  594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ------VKSFKGSRDHEGDLIKVILDPSG--IYLATSCSDKTL  665 (1080)
T ss_pred             cccceEEEeeeCCCcceEEEEecccceEEEeccccce------eeeecccccCCCceEEEEECCCc--cEEEEeecCCce
Confidence            223445555554  67999999999999999998873      22333334556677778888888  799999999999


Q ss_pred             EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .++|.-+++  ++....  +|...|+.+.|.+|-+.|++.+.||+|.||.+.
T Consensus       666 ~~~Df~sgE--cvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  666 CFVDFVSGE--CVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             EEEEeccch--hhhhhc--CcchheeeeeecccchhheeecCCceEEEEECc
Confidence            999999997  444544  899999999999999999999999999999875

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=7.5e-28  Score=166.24  Aligned_cols=215  Identities=18%  Similarity=0.241  Sum_probs=157.5

Q ss_pred             ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590           47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  126 (294)
Q Consensus        47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~  126 (294)
                      +.+++|...|.+++|+. ++..|++|+.|+++++|+++..+...... ..+|.+.|-.++|+|..+.+|++++.|.+|++
T Consensus        14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~-~~gh~~svdql~w~~~~~d~~atas~dk~ir~   91 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELV-YRGHTDSVDQLCWDPKHPDLFATASGDKTIRI   91 (313)
T ss_pred             HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhc-ccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence            56678999999999999 99999999999999999998775444332 34799999999999988999999999999999


Q ss_pred             EeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeec-ceecceEEEeeCCCeEEEecCCCCCCCCC-----
Q 022590          127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN-RWLGDFILSKSVDNEIVLWEPKMKEQSPG-----  200 (294)
Q Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----  200 (294)
                      ||++..+...                       ........+.-. ..+|+++++++.|..|.+.|.++.+....     
T Consensus        92 wd~r~~k~~~-----------------------~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~  148 (313)
T KOG1407|consen   92 WDIRSGKCTA-----------------------RIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF  148 (313)
T ss_pred             EEeccCcEEE-----------------------EeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc
Confidence            9999844322                       222222222111 11244555555554444444443221100     


Q ss_pred             ---------------------------CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceee
Q 022590          201 ---------------------------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI  253 (294)
Q Consensus       201 ---------------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  253 (294)
                                                 ....++++.++.|.....++.|+|+|  +++|+|+.|..+.+||++..-  +.
T Consensus       149 e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~G--ryfA~GsADAlvSLWD~~ELi--C~  224 (313)
T KOG1407|consen  149 EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG--RYFATGSADALVSLWDVDELI--CE  224 (313)
T ss_pred             eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCC--ceEeeccccceeeccChhHhh--hh
Confidence                                       01233567777888888899999999  699999999999999998753  44


Q ss_pred             eeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          254 ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       254 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ..+.  .+.-||+.+.||.+|++||+||+|-.|-|=+++
T Consensus       225 R~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~ve  261 (313)
T KOG1407|consen  225 RCIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVE  261 (313)
T ss_pred             eeec--cccCceEEEEeccCcceeeccCccceEEeEecc
Confidence            4444  556789999999999999999999988665544

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=1.8e-27  Score=167.31  Aligned_cols=210  Identities=19%  Similarity=0.290  Sum_probs=165.9

Q ss_pred             ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc------------eEEEeeccCCCCCceeEEEEecCCCceEE
Q 022590           49 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI------------CILIFAGAGGHRNEVLSVDFHPSDIYRIA  116 (294)
Q Consensus        49 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~  116 (294)
                      ...|.+.|+++...+..++++++|+.||.|.+||+++..            ++...+...+|.-.|.++.|-|.+..+|.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            346889999999999999999999999999999997543            11111223478889999999999999999


Q ss_pred             eeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce-----ecceEEEeeCCCeEEEec
Q 022590          117 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-----LGDFILSKSVDNEIVLWE  191 (294)
Q Consensus       117 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~l~~~~~d~~i~iwd  191 (294)
                      +++.|.+++|||.++.+...                       . ..-++.|.+-++     +.-++++|..+-.|++-|
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~-----------------------~-F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCD  174 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAV-----------------------D-FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCD  174 (397)
T ss_pred             cccccceEEEeecccceeeE-----------------------E-eecCceeehhhcChhhhcceEEEEecCCCcEEEEe
Confidence            99999999999999843211                       1 112233333333     255788888999999999


Q ss_pred             CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC------------ceeeeecccc
Q 022590          192 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP------------PVLIARLSHA  259 (294)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~  259 (294)
                      +.++.         ....+.+|...|.++.|+|... -.|++|+.||.|++||++...            ..+..+ ...
T Consensus       175 i~SGs---------~sH~LsGHr~~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~  243 (397)
T KOG4283|consen  175 IASGS---------FSHTLSGHRDGVLAVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNT  243 (397)
T ss_pred             ccCCc---------ceeeeccccCceEEEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-ccc
Confidence            99876         5788899999999999999987 588999999999999998641            111111 234


Q ss_pred             ccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          260 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       260 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|.+.|..++|+.++.++++++.|..+++|+...
T Consensus       244 ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~  277 (397)
T KOG4283|consen  244 AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES  277 (397)
T ss_pred             cccceeeeeeecccchhhhhccCccceEEeeccc
Confidence            6788999999999999999999999999999753

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=8.4e-28  Score=174.08  Aligned_cols=215  Identities=19%  Similarity=0.356  Sum_probs=166.9

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc---cceecccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL---HKSFVGHGDSINEIRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i   78 (294)
                      +.++.|...-++|+||+...|.  |++|.--+.|++|...++.-   ...+.+|+..|-.|+|+|.....|++|+.||+|
T Consensus       205 ~t~~ghk~EGy~LdWSp~~~g~--LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI  282 (440)
T KOG0302|consen  205 FTFNGHKGEGYGLDWSPIKTGR--LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI  282 (440)
T ss_pred             EEecccCccceeeecccccccc--cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceE
Confidence            4567899999999999766775  99999889999999988642   245677999999999999888999999999999


Q ss_pred             EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      +|||++.+.....+.. +.|.+.|+.|.|+. ...+||+|+.||+++|||+|+.+.                    ..|+
T Consensus       283 rIWDiRs~~~~~~~~~-kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~--------------------~~pV  340 (440)
T KOG0302|consen  283 RIWDIRSGPKKAAVST-KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKS--------------------GQPV  340 (440)
T ss_pred             EEEEecCCCccceeEe-eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccC--------------------CCcc
Confidence            9999998832222211 26999999999998 656999999999999999998432                    4678


Q ss_pred             EEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCC------C----CCCceeeeeeecCCCCeeEEEEccc
Q 022590          159 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSP------G----EGTADILQKYPVPECDIWFIKFSCD  225 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~------~----~~~~~~~~~~~~~~~~i~~~~~~~~  225 (294)
                      ..+..|..+|+++.|+   ...|++++.|.+|.+||+.......      .    .-+.+++.. ..-...+..+.|++.
T Consensus       341 A~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV-HqGQke~KevhWH~Q  419 (440)
T KOG0302|consen  341 ATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV-HQGQKEVKEVHWHRQ  419 (440)
T ss_pred             eeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE-ecchhHhhhheeccC
Confidence            8999999999999998   6789999999999999997543210      0    011112222 222345677888887


Q ss_pred             CCcceEEEEcCCCeEEEE
Q 022590          226 FHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       226 ~~~~~l~~~~~dg~i~i~  243 (294)
                      -. .++++.+.|| +.||
T Consensus       420 iP-G~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  420 IP-GLLVSTAIDG-FNVF  435 (440)
T ss_pred             CC-CeEEEecccc-eeEE
Confidence            66 4778877787 4444

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5.5e-28  Score=177.08  Aligned_cols=228  Identities=16%  Similarity=0.225  Sum_probs=167.0

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      .+..|..+|.-+.|+  ||.+ +|++++.|..+.+||+.+|.....+. +|...+.+++|.| |+..+++|+.|+++..|
T Consensus       264 tlvgh~~~V~yi~wS--PDdr-yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~w  339 (519)
T KOG0293|consen  264 TLVGHSQPVSYIMWS--PDDR-YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMW  339 (519)
T ss_pred             eeecccCceEEEEEC--CCCC-eEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEe
Confidence            355899999999998  9998 88888888899999999999887775 3568899999999 99999999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccc----cc---ceeecCCCCCCC----
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYV----EK---SFTWTDLPSKFP----  150 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~---~~~~~~~~~~~~----  150 (294)
                      |++ |..+...+.  .....|.+++..+ ++..+++.+.|..|++++........    +.   .+.........-    
T Consensus       340 dlD-gn~~~~W~g--vr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~  415 (519)
T KOG0293|consen  340 DLD-GNILGNWEG--VRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ  415 (519)
T ss_pred             cCC-cchhhcccc--cccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc
Confidence            995 444444442  1234688888888 77777777888888888876632220    00   011110000000    


Q ss_pred             C-------ceeeeceEEeecCCC--ceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCee
Q 022590          151 T-------KYVQFPVFIASVHSN--YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW  218 (294)
Q Consensus       151 ~-------~~~~~~~~~~~~~~~--~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~  218 (294)
                      .       ......+..+.+|..  .+-.-+|-   ..++++|+.|+.|+||+..+++         ++..+.+|...++
T Consensus       416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---------ll~~LsGHs~~vN  486 (519)
T KOG0293|consen  416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---------LLAVLSGHSKTVN  486 (519)
T ss_pred             cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---------eeEeecCCcceee
Confidence            0       000112223344443  23333443   4689999999999999999776         7899999999999


Q ss_pred             EEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590          219 FIKFSCDFHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       219 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                      +++|+|... .++|+++.||+|+||-....
T Consensus       487 cVswNP~~p-~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  487 CVSWNPADP-EMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EEecCCCCH-HHhhccCCCCeEEEecCCcc
Confidence            999999886 69999999999999987643

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=9.7e-27  Score=164.32  Aligned_cols=232  Identities=17%  Similarity=0.289  Sum_probs=171.5

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .|+.++.+++|.  ++.  .+++|+.||.|+.+|+.++... .+..|..+|.||.+++ ....+++|+.|++|++||.+.
T Consensus        52 ~~~~plL~c~F~--d~~--~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen   52 KHGAPLLDCAFA--DES--TIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             ecCCceeeeecc--CCc--eEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccc
Confidence            789999999996  443  6999999999999999887764 4566999999999999 778999999999999999988


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ......+.    ....|.++..   .++.|++|+.|..+.+||++......+.                     .-..-.
T Consensus       126 ~~~~~~~d----~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~---------------------reS~lk  177 (323)
T KOG1036|consen  126 KVVVGTFD----QGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQR---------------------RESSLK  177 (323)
T ss_pred             cccccccc----cCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhh---------------------ccccce
Confidence            66666655    4558999887   4567999999999999999985332211                     001112


Q ss_pred             Cceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC---------CCCeeEEEEcccCCcceEEEE
Q 022590          166 NYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP---------ECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       166 ~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~~~~~~~~~l~~~  234 (294)
                      -.+.|++.  ++.-+++++-||+|.+=.+...+....     ....+..|         --+|++++|+|--  ..|++|
T Consensus       178 yqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~s-----kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~--~tfaTg  250 (323)
T KOG1036|consen  178 YQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQS-----KKYAFKCHRLSEKDTEIIYPVNAIAFHPIH--GTFATG  250 (323)
T ss_pred             eEEEEEEEecCCCceEEEeecceEEEEccCCchHHhh-----hceeEEeeecccCCceEEEEeceeEecccc--ceEEec
Confidence            23444444  356788889999988765554421100     11111111         1378899999985  589999


Q ss_pred             cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc
Q 022590          235 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       235 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                      +.||.|.+||+.+.+.  ...+.  .-...|.+++|+.+|..||.++.
T Consensus       251 GsDG~V~~Wd~~~rKr--l~q~~--~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  251 GSDGIVNIWDLFNRKR--LKQLA--KYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             CCCceEEEccCcchhh--hhhcc--CCCCceEEEEeccCCCeEEEEec
Confidence            9999999999988753  22222  33467999999999999999863

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.96  E-value=2.2e-26  Score=182.29  Aligned_cols=274  Identities=19%  Similarity=0.226  Sum_probs=195.4

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~   86 (294)
                      .++|+.++|.  .||.+++|+|+..|.+.+||++..+.+..+. .|.+.|....|.| +...+++++.|..+++|=.+++
T Consensus       244 ~g~VtslSFr--tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~  320 (910)
T KOG1539|consen  244 WGRVTSLSFR--TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSG  320 (910)
T ss_pred             ccceeEEEec--cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCC
Confidence            5999999998  8999999999999999999999888777665 7989999999999 8889999999999999966644


Q ss_pred             ce-EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc----------------------------------
Q 022590           87 IC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE----------------------------------  131 (294)
Q Consensus        87 ~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~----------------------------------  131 (294)
                      .- .+.+....||..|..+|.|.-..+..+.+++.|++++.+++..                                  
T Consensus       321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~  400 (910)
T KOG1539|consen  321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE  400 (910)
T ss_pred             CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence            32 1222223377777777777654566666666666555544322                                  


Q ss_pred             -------------------------------ccc--ccccce--------------------eecCCCCCC------CCc
Q 022590          132 -------------------------------FWT--YVEKSF--------------------TWTDLPSKF------PTK  152 (294)
Q Consensus       132 -------------------------------~~~--~~~~~~--------------------~~~~~~~~~------~~~  152 (294)
                                                     ...  ......                    .+.+.....      ...
T Consensus       401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG  480 (910)
T KOG1539|consen  401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG  480 (910)
T ss_pred             eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence                                           000  001000                    000000000      000


Q ss_pred             eeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCC------------------------------
Q 022590          153 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG------------------------------  200 (294)
Q Consensus       153 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~------------------------------  200 (294)
                      ...........|..+|+.++.+  ++.+++++.+|-+++||+........                              
T Consensus       481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v  560 (910)
T KOG1539|consen  481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV  560 (910)
T ss_pred             eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence            0011111235799999999998  77899999999999999987652110                              


Q ss_pred             --CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEE
Q 022590          201 --EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL  278 (294)
Q Consensus       201 --~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  278 (294)
                        .......+.+.+|...|+.++|||+|  ++|++++.|++|++||+.++..+-...+.     .+.+++.|+|+|.+||
T Consensus       561 vD~~t~kvvR~f~gh~nritd~~FS~Dg--rWlisasmD~tIr~wDlpt~~lID~~~vd-----~~~~sls~SPngD~LA  633 (910)
T KOG1539|consen  561 VDVVTRKVVREFWGHGNRITDMTFSPDG--RWLISASMDSTIRTWDLPTGTLIDGLLVD-----SPCTSLSFSPNGDFLA  633 (910)
T ss_pred             EEchhhhhhHHhhccccceeeeEeCCCC--cEEEEeecCCcEEEEeccCcceeeeEecC-----CcceeeEECCCCCEEE
Confidence              00112345566789999999999999  69999999999999999999754444433     6789999999999999


Q ss_pred             EeccC-CcEEEEec
Q 022590          279 SCCED-GAIWRWDA  291 (294)
Q Consensus       279 s~~~d-g~i~vw~~  291 (294)
                      |...| .-|++|--
T Consensus       634 T~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  634 TVHVDQNGIYLWSN  647 (910)
T ss_pred             EEEecCceEEEEEc
Confidence            99988 55999953

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.3e-26  Score=160.70  Aligned_cols=236  Identities=12%  Similarity=0.192  Sum_probs=175.4

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCc--eEEEeeCCCcEEEEE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS--LVVSASKDESVRLWN   82 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i~vwd   82 (294)
                      ..|+++|.+++|+  .||. .+++|+.|+.+++||+.+++ ...+..|.++|.++.|-+ ...  .|++|+.|.+|+.||
T Consensus        69 ~~~~~PvL~v~Ws--ddgs-kVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD  143 (347)
T KOG0647|consen   69 QSHDGPVLDVCWS--DDGS-KVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWD  143 (347)
T ss_pred             hccCCCeEEEEEc--cCCc-eEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEec-CCCcceeEecccccceeecc
Confidence            3689999999998  8897 99999999999999999995 467788999999999988 544  899999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      ++...++..+.    -.+.++++..-   ..+++++..++.|.+|+++.........               ..|     
T Consensus       144 ~R~~~pv~t~~----LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~~---------------~Sp-----  196 (347)
T KOG0647|consen  144 TRSSNPVATLQ----LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKRI---------------ESP-----  196 (347)
T ss_pred             cCCCCeeeeee----ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhhh---------------cCc-----
Confidence            99999998887    67788888773   4678899999999999998732111000               000     


Q ss_pred             cCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee---cCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          163 VHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       163 ~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                       -.-.++|++.  +.+..+.|+-+|++.+..+..+.. ......++-+...   ..--.|++++|+|.-  ..|++.+.|
T Consensus       197 -Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h--gtlvTaGsD  272 (347)
T KOG0647|consen  197 -LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH--GTLVTAGSD  272 (347)
T ss_pred             -ccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeeccc--ceEEEecCC
Confidence             1122344433  256669999999999998887533 1111111111101   012357789999965  689999999


Q ss_pred             CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe
Q 022590          238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC  280 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  280 (294)
                      |...+||-.....+.  .  ...|..+|++.+|+.+|.++|-+
T Consensus       273 Gtf~FWDkdar~kLk--~--s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  273 GTFSFWDKDARTKLK--T--SETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             ceEEEecchhhhhhh--c--cCcCCCccceeEecCCCCEEEEE
Confidence            999999987754222  2  23677899999999999988754

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.7e-26  Score=163.65  Aligned_cols=227  Identities=17%  Similarity=0.262  Sum_probs=175.3

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +-.|.+.|+++.|....... .|++|+.||.|.+|+....+++.++++|.+.|+.++.+| .+++-++.+.|+.++.||+
T Consensus        79 ll~HagsitaL~F~~~~S~s-hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNL  156 (362)
T KOG0294|consen   79 LLSHAGSITALKFYPPLSKS-HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNL  156 (362)
T ss_pred             eeccccceEEEEecCCcchh-heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecC-CCceEEEEcCCceeeeehh
Confidence            34789999999998433333 799999999999999999999999999999999999999 8899999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      -+|+.-....    -....+.+.|+| .+.+++.++.+ .|-+|.+..-.                        +.....
T Consensus       157 V~Gr~a~v~~----L~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~A~------------------------v~~~i~  206 (362)
T KOG0294|consen  157 VRGRVAFVLN----LKNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDNAS------------------------VFREIE  206 (362)
T ss_pred             hcCccceeec----cCCcceeeEEcC-CCCEEEEEecc-EEEEEecccHh------------------------Hhhhhh
Confidence            9988766655    333445599999 77778887765 68899888621                        111111


Q ss_pred             CCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          164 HSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       164 ~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      .+..+.++.|. +..+++|+.++.|++||..+..         +...+..|..+|..+.+-.+....+|++.+.||.|++
T Consensus       207 ~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~---------~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v  277 (362)
T KOG0294|consen  207 NPKRILCATFLDGSELLVGGDNEWISLKDTDSDT---------PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV  277 (362)
T ss_pred             ccccceeeeecCCceEEEecCCceEEEeccCCCc---------cceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence            23556677775 8899999999999999998644         6788889999999998766655579999999999999


Q ss_pred             EeccCCCceeeeeccccccCCCeEEEEEc
Q 022590          243 WELQSSPPVLIARLSHAQSKSPIRQTAMS  271 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s  271 (294)
                      ||++.........+........++|+...
T Consensus       278 Wd~~~~~k~~~~~l~e~n~~~RltCl~~~  306 (362)
T KOG0294|consen  278 WDIDMETKKRPTLLAELNTNVRLTCLRVK  306 (362)
T ss_pred             EEccccccCCcceeEEeecCCccceeeeh
Confidence            99987632222111111224566666654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=8.8e-27  Score=172.71  Aligned_cols=254  Identities=12%  Similarity=0.112  Sum_probs=191.7

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      +.+.++|++++|.+..+-+ ++|+|..-|+|-+||+.+.    .-+..+..|..+|.+|.|+|.+...+++.+.||+|+.
T Consensus       183 kv~~~Rit~l~fHPt~~~~-lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  183 KVTDRRITSLAFHPTENRK-LVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             EecccceEEEEecccCcce-EEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            3678999999998654444 9999999999999999533    2345667899999999999998999999999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      -|++.+..-..+.. ......+..+.|+. +...++.+..=|...+||++...                      .....
T Consensus       262 ~D~~~~i~e~v~s~-~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~----------------------s~~~~  317 (498)
T KOG4328|consen  262 QDFEGNISEEVLSL-DTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDG----------------------SEYEN  317 (498)
T ss_pred             eeecchhhHHHhhc-CccceeeeeccccC-CCccEEEeecccceEEEEeecCC----------------------ccchh
Confidence            99987643322221 12445677888887 55556667666799999999842                      22445


Q ss_pred             eecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          161 ASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       161 ~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      +..|...|..++++   ..+|++++.|++.+|||+|.......     ++-..-.|...|.+..|||.+.  .|++.+.|
T Consensus       318 ~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst~~HrrsV~sAyFSPs~g--tl~TT~~D  390 (498)
T KOG4328|consen  318 LRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-----PFLSTLPHRRSVNSAYFSPSGG--TLLTTCQD  390 (498)
T ss_pred             hhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-----cceecccccceeeeeEEcCCCC--ceEeeccC
Confidence            66688899999997   77999999999999999997654221     2334445778899999999994  59999999


Q ss_pred             CeEEEEecc----CCCceeeeeccccccC---CCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          238 GKIFVWELQ----SSPPVLIARLSHAQSK---SPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       238 g~i~i~d~~----~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ..|+|||..    ...+.  ..+.|....   -..-..+|.|+..++++|-.-..|-|+|-+
T Consensus       391 ~~IRv~dss~~sa~~~p~--~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~  450 (498)
T KOG4328|consen  391 NEIRVFDSSCISAKDEPL--GTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN  450 (498)
T ss_pred             CceEEeecccccccCCcc--ceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence            999999984    33322  223221111   234457899999999999888888888753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=6.6e-27  Score=175.77  Aligned_cols=236  Identities=15%  Similarity=0.290  Sum_probs=192.6

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc--cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      .+.-|.++...  |||+ .|++|+.-.++.|||+....+  ...+....-...+++.+| |.++.+++..||.|.|||+.
T Consensus       464 rdnyiRSckL~--pdgr-tLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLh  539 (705)
T KOG0639|consen  464 RDNYIRSCKLL--PDGR-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLH  539 (705)
T ss_pred             cccceeeeEec--CCCc-eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcc
Confidence            34556667776  9999 899999999999999976543  334444445678899999 89999999999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      +...++.|+   +|.+.+.||..++ ++..|-+|+.|+++|.||+++.....+..                        .
T Consensus       540 nq~~Vrqfq---GhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd------------------------F  591 (705)
T KOG0639|consen  540 NQTLVRQFQ---GHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD------------------------F  591 (705)
T ss_pred             cceeeeccc---CCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh------------------------h
Confidence            999999998   8999999999999 99999999999999999999955433222                        2


Q ss_pred             CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      ...|.++.++  ++++++|-.++.+-+-.....+          ...+..|+..|.++.|++.|  .++++.+.|+.+..
T Consensus       592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~----------kyqlhlheScVLSlKFa~cG--kwfvStGkDnlLna  659 (705)
T KOG0639|consen  592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE----------KYQLHLHESCVLSLKFAYCG--KWFVSTGKDNLLNA  659 (705)
T ss_pred             hhhheecccCCCccceeeecccCcEEEEecCCcc----------ceeecccccEEEEEEecccC--ceeeecCchhhhhh
Confidence            3445555554  8999999999999888776543          34556678889999999999  59999999999999


Q ss_pred             EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      |...-+..++  ..   ....+|.++.+|.|.+|++||+.|....||.+
T Consensus       660 wrtPyGasiF--qs---kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  660 WRTPYGASIF--QS---KESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             ccCcccccee--ec---cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            9988775332  22   23378999999999999999999999999876

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1e-27  Score=195.67  Aligned_cols=248  Identities=14%  Similarity=0.244  Sum_probs=197.6

Q ss_pred             cCceeEEEEEeecCCCce---EEEEeecCCeEEEEEcCCc------cccceecccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590            7 KEESFYTVSWACNVDGIP---FLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES   77 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~---~l~~~~~dg~i~iw~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~   77 (294)
                      -..+.+.++|.  +.|..   +||.|..||.|.+||...-      ..+.+...|++.|..+.|++..+++||+|+.||.
T Consensus        63 s~~rF~kL~W~--~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge  140 (1049)
T KOG0307|consen   63 SSNRFNKLAWG--SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE  140 (1049)
T ss_pred             ccccceeeeec--ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc
Confidence            34678899998  44442   5999999999999998652      3456778899999999999977889999999999


Q ss_pred             EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      |.|||+...+....... ....+.|.+++|+....++|++++.+|.+.|||++.                       ..+
T Consensus       141 I~iWDlnn~~tP~~~~~-~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-----------------------~~p  196 (1049)
T KOG0307|consen  141 ILIWDLNKPETPFTPGS-QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-----------------------KKP  196 (1049)
T ss_pred             EEEeccCCcCCCCCCCC-CCCcccceEeccchhhhHHhhccCCCCCceeccccC-----------------------CCc
Confidence            99999987655444421 125678999999987789999999999999999998                       334


Q ss_pred             eEEeecCCC--ceeeccee---cceEEEeeCCC---eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          158 VFIASVHSN--YVDCNRWL---GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       158 ~~~~~~~~~--~i~~~~~~---~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                      +..+..+..  .+..+.|+   ...+++++.|.   .|.+||+|....        .++.+..|...|.++.|++.+. .
T Consensus       197 ii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass--------P~k~~~~H~~GilslsWc~~D~-~  267 (1049)
T KOG0307|consen  197 IIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS--------PLKILEGHQRGILSLSWCPQDP-R  267 (1049)
T ss_pred             ccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC--------chhhhcccccceeeeccCCCCc-h
Confidence            444444443  46678887   34566666554   599999997543        6777789999999999999886 6


Q ss_pred             eEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEeccCCcEEEEecCC
Q 022590          230 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~~  293 (294)
                      ++++++.|+.|.+|+.++++  .+..+.  .....+..+.|+|... .++.++-||.|.|+.+..
T Consensus       268 lllSsgkD~~ii~wN~~tgE--vl~~~p--~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  268 LLLSSGKDNRIICWNPNTGE--VLGELP--AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             hhhcccCCCCeeEecCCCce--EeeecC--CCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            89999999999999999986  445554  4557899999999766 788899999999998864

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.95  E-value=2.8e-25  Score=166.97  Aligned_cols=235  Identities=16%  Similarity=0.308  Sum_probs=184.9

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      +.-|.|++|.  ++|+  +++|.++|.|.||+..+.+..+....|.+.|.+++... ++. |++|+.|..|..||-. -+
T Consensus       246 kk~Vl~v~F~--engd--viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~-y~  318 (626)
T KOG2106|consen  246 KKFVLCVTFL--ENGD--VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLR-DGT-LLSGGKDRKIILWDDN-YR  318 (626)
T ss_pred             ceEEEEEEEc--CCCC--EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEec-Ccc-EeecCccceEEecccc-cc
Confidence            3678888887  8897  99999999999999988887777779999999999988 665 5569999999999832 11


Q ss_pred             eEEEeec--------------------------------------cCCCCCceeEEEEecCCCceEEeeecCCcEEEEec
Q 022590           88 CILIFAG--------------------------------------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM  129 (294)
Q Consensus        88 ~~~~~~~--------------------------------------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~  129 (294)
                      .++..+.                                      ..+|......++.+| +.+++++++.|+.+++|+-
T Consensus       319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~~  397 (626)
T KOG2106|consen  319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWND  397 (626)
T ss_pred             ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEccC
Confidence            1110000                                      016888999999999 7788999999999999992


Q ss_pred             cccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeee
Q 022590          130 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ  208 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  208 (294)
                      ..                         +. -...-..+..|+.|+ ...++.|...|...+.|.++..         .+.
T Consensus       398 ~k-------------------------~~-wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~---------lv~  442 (626)
T KOG2106|consen  398 HK-------------------------LE-WTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD---------LVT  442 (626)
T ss_pred             Cc-------------------------ee-EEEEecCceeEeeccCcceEEEeeccceEEEEecccce---------eEE
Confidence            22                         11 112234566777776 3399999999999999998643         333


Q ss_pred             eeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEE
Q 022590          209 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR  288 (294)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v  288 (294)
                      .... ..++..++|+|+|  .+||.|+.|+.|++|.+..+.......-.  .+..+|+.+.||+|+++|.+-+.|-.|..
T Consensus       443 ~~~d-~~~ls~v~ysp~G--~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k--~~gs~ithLDwS~Ds~~~~~~S~d~eiLy  517 (626)
T KOG2106|consen  443 IHTD-NEQLSVVRYSPDG--AFLAVGSHDNHIYIYRVSANGRKYSRVGK--CSGSPITHLDWSSDSQFLVSNSGDYEILY  517 (626)
T ss_pred             EEec-CCceEEEEEcCCC--CEEEEecCCCeEEEEEECCCCcEEEEeee--ecCceeEEeeecCCCceEEeccCceEEEE
Confidence            3333 7899999999999  69999999999999999887655544444  33489999999999999999999999999


Q ss_pred             Ee
Q 022590          289 WD  290 (294)
Q Consensus       289 w~  290 (294)
                      |.
T Consensus       518 W~  519 (626)
T KOG2106|consen  518 WK  519 (626)
T ss_pred             Ec
Confidence            94

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.4e-27  Score=172.21  Aligned_cols=226  Identities=20%  Similarity=0.244  Sum_probs=170.4

Q ss_pred             cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEE
Q 022590           46 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK  125 (294)
Q Consensus        46 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~  125 (294)
                      +..+.+|.+.|.+++=+|..-..+++|+.||.|++||+.+..+...+.   .|.+.|..|++..   ..+++++.|.+|+
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~---AH~G~V~Gi~v~~---~~~~tvgdDKtvK  132 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK---AHEGLVRGICVTQ---TSFFTVGDDKTVK  132 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheee---cccCceeeEEecc---cceEEecCCccee
Confidence            345689999999999999544789999999999999999999999998   7999999999974   5688999999999


Q ss_pred             EEeccccccc-cc--------------cceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeE
Q 022590          126 IWSMKEFWTY-VE--------------KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEI  187 (294)
Q Consensus       126 ~wd~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i  187 (294)
                      .|.+...... ..              ..+...+.....-......|+..+..-.+.|.++.|+   ...|++++.|+.|
T Consensus       133 ~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI  212 (433)
T KOG0268|consen  133 QWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI  212 (433)
T ss_pred             eeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence            9986652000 00              0000000000011112234566666677778888887   5688899999999


Q ss_pred             EEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEE
Q 022590          188 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ  267 (294)
Q Consensus       188 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  267 (294)
                      .+||++....         +..... ...-+.++|+|..  ..++++++|..++.||++..+.   ....+.+|.+.|.+
T Consensus       213 vLyD~R~~~P---------l~KVi~-~mRTN~IswnPea--fnF~~a~ED~nlY~~DmR~l~~---p~~v~~dhvsAV~d  277 (433)
T KOG0268|consen  213 VLYDLRQASP---------LKKVIL-TMRTNTICWNPEA--FNFVAANEDHNLYTYDMRNLSR---PLNVHKDHVSAVMD  277 (433)
T ss_pred             EEEecccCCc---------cceeee-eccccceecCccc--cceeeccccccceehhhhhhcc---cchhhcccceeEEE
Confidence            9999998763         332222 2345679999965  5788999999999999988642   22224588899999


Q ss_pred             EEEccCCCEEEEeccCCcEEEEecC
Q 022590          268 TAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       268 ~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +.|||.|+-+++||.|.+|+||.++
T Consensus       278 VdfsptG~EfvsgsyDksIRIf~~~  302 (433)
T KOG0268|consen  278 VDFSPTGQEFVSGSYDKSIRIFPVN  302 (433)
T ss_pred             eccCCCcchhccccccceEEEeecC
Confidence            9999999999999999999999875

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=2.6e-25  Score=172.36  Aligned_cols=251  Identities=18%  Similarity=0.199  Sum_probs=193.1

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-ccceeccc-CcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-LHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      .+=...+|.++|++  .+.+ .||.+-.||.|.+|++..+= +...+.++ ...|.+++|++  +..|++.+.+|.|.-|
T Consensus        21 ~d~~Ps~I~slA~s--~kS~-~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~Ew   95 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYS--HKSN-QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEW   95 (691)
T ss_pred             EeeeccceEEEEEe--ccCC-ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEE
Confidence            34456789999998  5565 79999999999999998753 23344544 45799999996  4578899999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      |+.+++....+.   ...+.|++++.+| .+..++.|+.||.+..++.......                     ....+
T Consensus        96 Dl~~lk~~~~~d---~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~---------------------~~r~l  150 (691)
T KOG2048|consen   96 DLHTLKQKYNID---SNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKIT---------------------YKRSL  150 (691)
T ss_pred             ecccCceeEEec---CCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEE---------------------EEeec
Confidence            999999999888   5788999999999 8888999999997777777653211                     12233


Q ss_pred             ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-CCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ....+.|.+++|+  +..++.|+.||.|++||..++...... .. .+..+.. ...-|+++.|-.++   .+++|+.-|
T Consensus       151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~-~~-~~d~l~k~~~~iVWSv~~Lrd~---tI~sgDS~G  225 (691)
T KOG2048|consen  151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHII-TM-QLDRLSKREPTIVWSVLFLRDS---TIASGDSAG  225 (691)
T ss_pred             ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEe-ee-cccccccCCceEEEEEEEeecC---cEEEecCCc
Confidence            4446889999998  567899999999999999987642200 00 0111111 33457788887665   799999999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|.+||...+..  ....  ..|...|.+++..+++.++++++.|+.|.-+...+
T Consensus       226 ~V~FWd~~~gTL--iqS~--~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~  276 (691)
T KOG2048|consen  226 TVTFWDSIFGTL--IQSH--SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTT  276 (691)
T ss_pred             eEEEEcccCcch--hhhh--hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecC
Confidence            999999998863  2333  37778899999999999999999999988876543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.95  E-value=4.4e-25  Score=174.96  Aligned_cols=278  Identities=13%  Similarity=0.171  Sum_probs=201.7

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      +.+..+...|+++.=+  |-=. .+|.|..+|+|.++|+..++.+.+++...++|+.++|..++..++++|+..|.+.+|
T Consensus       196 ~~f~~~~s~IT~ieqs--PaLD-VVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w  272 (910)
T KOG1539|consen  196 YTFQEFFSRITAIEQS--PALD-VVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW  272 (910)
T ss_pred             EEecccccceeEeccC--Ccce-EEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence            4456777899999877  6555 899999999999999999999999995569999999998666788899999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccc------------ceeecC-----
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK------------SFTWTD-----  144 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~------------~~~~~~-----  144 (294)
                      |++..+.+.....  .|.+.|....|.| +...+++++.|+.+++|=..++......            .+.+-+     
T Consensus       273 DLe~kkl~~v~~n--ah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~  349 (910)
T KOG1539|consen  273 DLEKKKLINVTRN--AHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF  349 (910)
T ss_pred             EcCCCeeeeeeec--cccCCcccceecC-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence            9998888777765  6889999999999 9999999999999998866632110000            000000     


Q ss_pred             -------------------------C---------CCCC-CCceeeece-------------------------------
Q 022590          145 -------------------------L---------PSKF-PTKYVQFPV-------------------------------  158 (294)
Q Consensus       145 -------------------------~---------~~~~-~~~~~~~~~-------------------------------  158 (294)
                                               .         .... .......++                               
T Consensus       350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~  429 (910)
T KOG1539|consen  350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF  429 (910)
T ss_pred             EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence                                     0         0000 000000000                               


Q ss_pred             -------EEee-----cCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590          159 -------FIAS-----VHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  224 (294)
Q Consensus       159 -------~~~~-----~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (294)
                             ..+.     .....+++++.  +|++.+.|+..|.|-+|+++++-..      .....-+.|..+|+.++...
T Consensus       430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r------~sf~~~~ah~~~V~gla~D~  503 (910)
T KOG1539|consen  430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR------KSFGDSPAHKGEVTGLAVDG  503 (910)
T ss_pred             cCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee------cccccCccccCceeEEEecC
Confidence                   0000     01134444444  4999999999999999999987521      12223357888999998877


Q ss_pred             cCCcceEEEEcCCCeEEEEeccCCCceeee-------------------------------------eccccccCCCeEE
Q 022590          225 DFHYNAAAIGNREGKIFVWELQSSPPVLIA-------------------------------------RLSHAQSKSPIRQ  267 (294)
Q Consensus       225 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------~~~~~~~~~~v~~  267 (294)
                      -+  ..+++++.+|.+++||.++.......                                     .-...+|...|++
T Consensus       504 ~n--~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd  581 (910)
T KOG1539|consen  504 TN--RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD  581 (910)
T ss_pred             CC--ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee
Confidence            66  68999999999999998765411000                                     0012368899999


Q ss_pred             EEEccCCCEEEEeccCCcEEEEecCC
Q 022590          268 TAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       268 ~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++|||||++|++++.|++|++||+-+
T Consensus       582 ~~FS~DgrWlisasmD~tIr~wDlpt  607 (910)
T KOG1539|consen  582 MTFSPDGRWLISASMDSTIRTWDLPT  607 (910)
T ss_pred             eEeCCCCcEEEEeecCCcEEEEeccC
Confidence            99999999999999999999999854

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=5.4e-28  Score=188.52  Aligned_cols=220  Identities=20%  Similarity=0.355  Sum_probs=189.3

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  104 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  104 (294)
                      +++.+...-.+++|+..      .+-.|...|.++..-. ..+.+++|+.|..+-+|.+.....+..+.   +|..+|.+
T Consensus         6 ~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~-s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~---~hespIeS   75 (825)
T KOG0267|consen    6 FLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRK-SSRSLVTGGEDEKVNLWAIGKPNAITSLT---GHESPIES   75 (825)
T ss_pred             ccceeeeeeccccccch------hhhhhhhhhceeeeec-cceeeccCCCceeeccccccCCchhheee---ccCCccee
Confidence            45555566677788753      3445888888888855 77899999999999999998777777666   79999999


Q ss_pred             EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee
Q 022590          105 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  182 (294)
Q Consensus       105 l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  182 (294)
                      +.|++ ...+|++|+.+|+|++||+..                       ...+..+.+|...+..+.|+  +.+++.++
T Consensus        76 l~f~~-~E~LlaagsasgtiK~wDlee-----------------------Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gS  131 (825)
T KOG0267|consen   76 LTFDT-SERLLAAGSASGTIKVWDLEE-----------------------AKIVRTLTGHLLNITSVDFHPYGEFFASGS  131 (825)
T ss_pred             eecCc-chhhhcccccCCceeeeehhh-----------------------hhhhhhhhccccCcceeeeccceEEecccc
Confidence            99999 889999999999999999998                       45567889999999999998  88999999


Q ss_pred             CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccC
Q 022590          183 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK  262 (294)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  262 (294)
                      .|+.+++||.+...         +...+..|...+..+.|+|+|  .+++.|++|..+++||+..++  ....+.  .|.
T Consensus       132 tdtd~~iwD~Rk~G---------c~~~~~s~~~vv~~l~lsP~G--r~v~~g~ed~tvki~d~~agk--~~~ef~--~~e  196 (825)
T KOG0267|consen  132 TDTDLKIWDIRKKG---------CSHTYKSHTRVVDVLRLSPDG--RWVASGGEDNTVKIWDLTAGK--LSKEFK--SHE  196 (825)
T ss_pred             ccccceehhhhccC---------ceeeecCCcceeEEEeecCCC--ceeeccCCcceeeeecccccc--cccccc--ccc
Confidence            99999999999443         677778888889999999999  699999999999999999886  444444  788


Q ss_pred             CCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          263 SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       263 ~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +.+.++.|+|..-++++|+.|+++++||+++
T Consensus       197 ~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet  227 (825)
T KOG0267|consen  197 GKVQSLEFHPLEVLLAPGSSDRTVRFWDLET  227 (825)
T ss_pred             ccccccccCchhhhhccCCCCceeeeeccce
Confidence            8999999999999999999999999999973

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.9e-25  Score=174.79  Aligned_cols=244  Identities=14%  Similarity=0.202  Sum_probs=183.9

Q ss_pred             EEEEeecCCCceEEEEeecCCeEEEEEcCCcccc---ceecccCcceEEEEeCCC----------CCceEEEeeCCCcEE
Q 022590           13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH---KSFVGHGDSINEIRTQPL----------KPSLVVSASKDESVR   79 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~~~~h~~~v~~~~~~~~----------~~~~l~s~~~dg~i~   79 (294)
                      +++..|++... .|.+.-.|..++|||+.+-+.+   ..+--|...|+.+.--|-          -...+++++.|++||
T Consensus       327 ~IA~~Fdet~~-klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR  405 (1080)
T KOG1408|consen  327 AIACQFDETTD-KLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR  405 (1080)
T ss_pred             eeEEEecCCCc-eEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence            56667778887 8999999999999999875433   233348888877765551          124689999999999


Q ss_pred             EEEcCCCceEEEee----------c------------------------cCCCCCceeEEEEecCCCceEEeeecCCcEE
Q 022590           80 LWNVQTGICILIFA----------G------------------------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVK  125 (294)
Q Consensus        80 vwd~~~~~~~~~~~----------~------------------------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~  125 (294)
                      +||+..+..-..+.          .                        ..+....+.+++.+| ++++|++|..-|+++
T Consensus       406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~Gnlr  484 (1080)
T KOG1408|consen  406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLR  484 (1080)
T ss_pred             EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceE
Confidence            99997521111100          0                        003445689999999 999999999999999


Q ss_pred             EEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-----cceEEEeeCCCeEEEecCCCCCCCCC
Q 022590          126 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPG  200 (294)
Q Consensus       126 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~  200 (294)
                      +|++..                       .........|+..|.|+.|+     ..+|++++.|+-|++||....-.   
T Consensus       485 Vy~Lq~-----------------------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~---  538 (1080)
T KOG1408|consen  485 VYDLQE-----------------------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD---  538 (1080)
T ss_pred             EEEehh-----------------------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc---
Confidence            999998                       34456778899999999997     46899999999999999976432   


Q ss_pred             CCCceeeeeeecCCCC-------------------------------------------------eeEEEEcccCCcceE
Q 022590          201 EGTADILQKYPVPECD-------------------------------------------------IWFIKFSCDFHYNAA  231 (294)
Q Consensus       201 ~~~~~~~~~~~~~~~~-------------------------------------------------i~~~~~~~~~~~~~l  231 (294)
                           +++.+..|...                                                 ++.++..|..  .++
T Consensus       539 -----l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~--k~v  611 (1080)
T KOG1408|consen  539 -----LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS--KLV  611 (1080)
T ss_pred             -----hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCc--ceE
Confidence                 23333333333                                                 4444555554  589


Q ss_pred             EEEcCCCeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          232 AIGNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       232 ~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++++.|..|+||++++++.  ...++ ...|.+....+...|.|-|||+.+.|.++.++|+.+
T Consensus       612 ~t~cQDrnirif~i~sgKq--~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s  672 (1080)
T KOG1408|consen  612 VTVCQDRNIRIFDIESGKQ--VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS  672 (1080)
T ss_pred             EEEecccceEEEeccccce--eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc
Confidence            9999999999999999974  44444 336667888899999999999999999999999854

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=1.9e-26  Score=170.95  Aligned_cols=221  Identities=16%  Similarity=0.231  Sum_probs=169.8

Q ss_pred             EcCCccccceecccCcceEEEEeCCCCC-ceEEEeeCCCcEEEEEcCCC----ceEEEeeccCCCCCceeEEEEecCCCc
Q 022590           39 DVSNEKLHKSFVGHGDSINEIRTQPLKP-SLVVSASKDESVRLWNVQTG----ICILIFAGAGGHRNEVLSVDFHPSDIY  113 (294)
Q Consensus        39 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~  113 (294)
                      |+.+-......+-+.++|++++|+|... +++++|..-|+|-+||+.+.    ..+..+.   .|..+|.+|.|+|.+..
T Consensus       172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~---~hs~~Vs~l~F~P~n~s  248 (498)
T KOG4328|consen  172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT---PHSGPVSGLKFSPANTS  248 (498)
T ss_pred             ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec---cCCccccceEecCCChh
Confidence            3333344455667889999999999766 68899999999999999532    2334444   69999999999998889


Q ss_pred             eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEec
Q 022590          114 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWE  191 (294)
Q Consensus       114 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd  191 (294)
                      .+++.+.||+|++-|+......                     .+.........+..+.|+  ...++.+..=|...+||
T Consensus       249 ~i~ssSyDGtiR~~D~~~~i~e---------------------~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD  307 (498)
T KOG4328|consen  249 QIYSSSYDGTIRLQDFEGNISE---------------------EVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID  307 (498)
T ss_pred             heeeeccCceeeeeeecchhhH---------------------HHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence            9999999999999999873211                     122222334455666665  45566666667999999


Q ss_pred             CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEc
Q 022590          192 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS  271 (294)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s  271 (294)
                      +++...        ....+..|...|..+++.|-.. .+|++++.|++.+|||++.........+....|...|.+..||
T Consensus       308 ~R~~~s--------~~~~~~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS  378 (498)
T KOG4328|consen  308 LRTDGS--------EYENLRLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS  378 (498)
T ss_pred             eecCCc--------cchhhhhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence            998763        3555666777899999999886 6899999999999999987654332123334788999999999


Q ss_pred             cCCCEEEEeccCCcEEEEecC
Q 022590          272 YDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       272 ~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |.+-.|+|.+.|..|+|||..
T Consensus       379 Ps~gtl~TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  379 PSGGTLLTTCQDNEIRVFDSS  399 (498)
T ss_pred             CCCCceEeeccCCceEEeecc
Confidence            998889999999999999973

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.95  E-value=4.6e-24  Score=163.59  Aligned_cols=236  Identities=13%  Similarity=0.113  Sum_probs=163.0

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCCcEEEEEcCCCce
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGIC   88 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~   88 (294)
                      .+.+++|+  |+|+.++++++.++.|++||..+++....+..+.. +..++|+| +++.+ ++++.|+.|++||+.+++.
T Consensus        32 ~~~~l~~~--~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~  107 (300)
T TIGR03866        32 RPRGITLS--KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHP-NGKILYIANEDDNLVTVIDIETRKV  107 (300)
T ss_pred             CCCceEEC--CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeE
Confidence            35677886  88883346778899999999999888777765543 57789999 66655 4556789999999998887


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCC-cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      +..+.    +...+.+++|+| ++.+++++..++ .+.+||.++...                       ..... ....
T Consensus       108 ~~~~~----~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~-----------------------~~~~~-~~~~  158 (300)
T TIGR03866       108 LAEIP----VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEI-----------------------VDNVL-VDQR  158 (300)
T ss_pred             EeEee----CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeE-----------------------EEEEE-cCCC
Confidence            77665    344578899999 888888887765 467778876321                       11111 1122


Q ss_pred             eeeccee--cceEE-EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC-------CCCeeEEEEcccCCcceEEEEcCC
Q 022590          168 VDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-------ECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       168 i~~~~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      ...+.|+  +.+++ ++..++.|++||+++++.         +..+..+       ......++|+|+++ ..+++...+
T Consensus       159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~~s~dg~-~~~~~~~~~  228 (300)
T TIGR03866       159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRKV---------IKKITFEIPGVHPEAVQPVGIKLTKDGK-TAFVALGPA  228 (300)
T ss_pred             ccEEEECCCCCEEEEEcCCCCEEEEEEcCccee---------eeeeeecccccccccCCccceEECCCCC-EEEEEcCCC
Confidence            3455564  66665 445699999999987652         2221111       11234688999995 223444556


Q ss_pred             CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe-ccCCcEEEEecCC
Q 022590          238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRWDAIP  293 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vw~~~~  293 (294)
                      +.+.+||+++.+...  ...   +...+.+++|+|+|++|+++ +.+|.|++||+++
T Consensus       229 ~~i~v~d~~~~~~~~--~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~  280 (300)
T TIGR03866       229 NRVAVVDAKTYEVLD--YLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA  280 (300)
T ss_pred             CeEEEEECCCCcEEE--EEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            789999998775332  221   22468899999999999886 5689999999875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-24  Score=169.05  Aligned_cols=249  Identities=16%  Similarity=0.242  Sum_probs=198.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      ..++.|.+++|+  +.+  .|++.+.+|.|.-||+.++++...+....++|++++.+| .+..++.|+.||.+...+...
T Consensus        67 ~~drsIE~L~W~--e~~--RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p  141 (691)
T KOG2048|consen   67 PEDRSIESLAWA--EGG--RLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGP  141 (691)
T ss_pred             CCCCceeeEEEc--cCC--eEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCC
Confidence            456799999998  555  599999999999999999999999999999999999999 888999999999777777766


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec-C
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-H  164 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  164 (294)
                      ++...... +...++.|.+++|+| ++..+++|+.||.|++||...+.......                ..+..+.. .
T Consensus       142 ~~I~~~r~-l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~----------------~~~d~l~k~~  203 (691)
T KOG2048|consen  142 DKITYKRS-LMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIIT----------------MQLDRLSKRE  203 (691)
T ss_pred             ceEEEEee-cccccceEEEEEecC-CccEEEecccCceEEEEEcCCCceEEEee----------------ecccccccCC
Confidence            66544332 224568999999999 88889999999999999999843322100                00111111 2


Q ss_pred             CCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590          165 SNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       165 ~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~  243 (294)
                      +.-|.++.|- ...+++|...|+|.+||...+.         +++.+..|...|.+++..+++  +++++++.|+.|..|
T Consensus       204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT---------LiqS~~~h~adVl~Lav~~~~--d~vfsaGvd~~ii~~  272 (691)
T KOG2048|consen  204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT---------LIQSHSCHDADVLALAVADNE--DRVFSAGVDPKIIQY  272 (691)
T ss_pred             ceEEEEEEEeecCcEEEecCCceEEEEcccCcc---------hhhhhhhhhcceeEEEEcCCC--CeEEEccCCCceEEE
Confidence            2334455553 7899999999999999998665         677788889999999999998  589999999999999


Q ss_pred             eccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      ...+.+...+.......|...|.+++..++  .|++|+.|..+.+-.
T Consensus       273 ~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~  317 (691)
T KOG2048|consen  273 SLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS  317 (691)
T ss_pred             EecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence            988876545555555678889999999887  899999999887643

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.94  E-value=8e-26  Score=170.03  Aligned_cols=239  Identities=16%  Similarity=0.267  Sum_probs=191.8

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---cccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      .|.+-|.++..+  ...+ ++++|+. |.|+|||+...   .++..+.  ....-|.++.+.| +++.|++|+.-.++.|
T Consensus       417 ~HGEvVcAvtIS--~~tr-hVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~p-dgrtLivGGeastlsi  491 (705)
T KOG0639|consen  417 AHGEVVCAVTIS--NPTR-HVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLP-DGRTLIVGGEASTLSI  491 (705)
T ss_pred             ccCcEEEEEEec--CCcc-eeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecC-CCceEEeccccceeee
Confidence            688888888887  5555 7888875 68999998643   2333332  2356789999999 8999999999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ||+........... ....-..++++.+| +.++.+++..||.|.|||+..                       +..+..
T Consensus       492 WDLAapTprikael-tssapaCyALa~sp-DakvcFsccsdGnI~vwDLhn-----------------------q~~Vrq  546 (705)
T KOG0639|consen  492 WDLAAPTPRIKAEL-TSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHN-----------------------QTLVRQ  546 (705)
T ss_pred             eeccCCCcchhhhc-CCcchhhhhhhcCC-ccceeeeeccCCcEEEEEccc-----------------------ceeeec
Confidence            99976554322221 02334678899999 889999999999999999998                       677889


Q ss_pred             eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      +.+|.+.+.|+..+  |..|-+|+-|.++|-||++.+.+         +..... ...|.++..+|.+  .++++|-+++
T Consensus       547 fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq---------lqqhdF-~SQIfSLg~cP~~--dWlavGMens  614 (705)
T KOG0639|consen  547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ---------LQQHDF-SSQIFSLGYCPTG--DWLAVGMENS  614 (705)
T ss_pred             ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh---------hhhhhh-hhhheecccCCCc--cceeeecccC
Confidence            99999999999997  99999999999999999998763         222221 3568889999998  6999999999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      .+.+......+.   ..+.  .|...|.++.|.+.|+++++.+.|+.+..|..
T Consensus       615 ~vevlh~skp~k---yqlh--lheScVLSlKFa~cGkwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  615 NVEVLHTSKPEK---YQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             cEEEEecCCccc---eeec--ccccEEEEEEecccCceeeecCchhhhhhccC
Confidence            999988877642   2222  67789999999999999999999999999975

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=2.7e-25  Score=170.27  Aligned_cols=265  Identities=16%  Similarity=0.191  Sum_probs=183.1

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      ..|++.|.+|+..  |.|. +|++|+.||+|+||.+.++.+++++. ..+.|.|++|+|.....++++..+..+.|-+..
T Consensus       397 rGHtg~Vr~iSvd--p~G~-wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~  472 (733)
T KOG0650|consen  397 RGHTGLVRSISVD--PSGE-WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPI  472 (733)
T ss_pred             eccCCeEEEEEec--CCcc-eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence            5899999999987  7898 99999999999999999999999887 467999999999544444444444445554432


Q ss_pred             CCce-------------------------------------EEEeeccCCCCCceeEEEEecCCCceEEeeecC---CcE
Q 022590           85 TGIC-------------------------------------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NTV  124 (294)
Q Consensus        85 ~~~~-------------------------------------~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d---g~i  124 (294)
                      -|..                                     +....   .|...|..+.|+. .|.+|++...+   ..|
T Consensus       473 ~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I---~~~k~i~~vtWHr-kGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  473 FGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI---KHPKSIRQVTWHR-KGDYLATVMPDSGNKSV  548 (733)
T ss_pred             ccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE---ecCCccceeeeec-CCceEEEeccCCCcceE
Confidence            2200                                     01111   3788899999998 89999988654   468


Q ss_pred             EEEecccccccccc--------ceeecCCCCCC-CCcee---------eeceEEeecCCCceeeccee--cceEEEeeCC
Q 022590          125 KIWSMKEFWTYVEK--------SFTWTDLPSKF-PTKYV---------QFPVFIASVHSNYVDCNRWL--GDFILSKSVD  184 (294)
Q Consensus       125 ~~wd~~~~~~~~~~--------~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d  184 (294)
                      .|.++.......-.        ...+.+....+ .....         +..+..+......|..++.+  |+.|+.++.|
T Consensus       549 liHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d  628 (733)
T KOG0650|consen  549 LIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD  628 (733)
T ss_pred             EEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence            88888763321110        01111100000 00000         00001111223445555555  7999999999


Q ss_pred             CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc-------CCCceeeeecc
Q 022590          185 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-------SSPPVLIARLS  257 (294)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~  257 (294)
                      +.+..||+.....        +.+.+..|...++.++|++.-  .++++|+.||.+.||.-.       +.-.+.+..+.
T Consensus       629 ~k~~WfDldlssk--------Pyk~lr~H~~avr~Va~H~ry--PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~  698 (733)
T KOG0650|consen  629 KKMCWFDLDLSSK--------PYKTLRLHEKAVRSVAFHKRY--PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR  698 (733)
T ss_pred             CeeEEEEcccCcc--------hhHHhhhhhhhhhhhhhcccc--ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc
Confidence            9999999986543        667778889999999999887  699999999999998532       22223344444


Q ss_pred             ccccCC----CeEEEEEccCCCEEEEeccCCcEEEE
Q 022590          258 HAQSKS----PIRQTAMSYDGSTILSCCEDGAIWRW  289 (294)
Q Consensus       258 ~~~~~~----~v~~~~~s~~~~~l~s~~~dg~i~vw  289 (294)
                        +|..    .|..+.|+|...+|++++.||.|++|
T Consensus       699 --gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  699 --GHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             --CceeecccceEeecccCCCceEEecCCCceEEee
Confidence              5544    48999999999999999999999998

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.94  E-value=1.2e-23  Score=158.22  Aligned_cols=257  Identities=15%  Similarity=0.177  Sum_probs=189.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEe--ecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAG--GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .-+..|.|++|+....|. +++.-  +.+..+.+||...+......+.-++.|....|+|.+.+++++++. |.+.+|+.
T Consensus       152 ~f~~GV~~vaFsk~~~G~-~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~  229 (626)
T KOG2106|consen  152 FFDRGVTCVAFSKINGGS-LLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTL  229 (626)
T ss_pred             cccccceeeeecccCCCc-eEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEc
Confidence            345789999999877777 55554  455678999999888888888888899999999988888888887 89999999


Q ss_pred             CCCceEEEeeccCCCC-CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           84 QTGICILIFAGAGGHR-NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.+...+....++.+. ..|.|++|.+ ++. +++|..+|.|.+|+....                       .......
T Consensus       230 ~~~~l~k~~~~fek~ekk~Vl~v~F~e-ngd-viTgDS~G~i~Iw~~~~~-----------------------~~~k~~~  284 (626)
T KOG2106|consen  230 RGGSLVKRQGIFEKREKKFVLCVTFLE-NGD-VITGDSGGNILIWSKGTN-----------------------RISKQVH  284 (626)
T ss_pred             cCCceEEEeeccccccceEEEEEEEcC-CCC-EEeecCCceEEEEeCCCc-----------------------eEEeEee
Confidence            9887766554433333 6799999998 766 889999999999999772                       2233334


Q ss_pred             cCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCC-----CCc--------------------------eeeeee
Q 022590          163 VHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGE-----GTA--------------------------DILQKY  210 (294)
Q Consensus       163 ~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~--------------------------~~~~~~  210 (294)
                      .|++.|.+++.- ...|++|+.|+.|..||-.-.+....+     +..                          ......
T Consensus       285 aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v  364 (626)
T KOG2106|consen  285 AHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTV  364 (626)
T ss_pred             ecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEE
Confidence            899999999886 556777999999999994332221110     000                          001223


Q ss_pred             ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc---------------------------------
Q 022590          211 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS---------------------------------  257 (294)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------------------------------  257 (294)
                      ..|......++.+|+.  +.+++++.|+.+++|+  ..+++....+.                                 
T Consensus       365 ~gh~delwgla~hps~--~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~l  440 (626)
T KOG2106|consen  365 QGHGDELWGLATHPSK--NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDL  440 (626)
T ss_pred             EecccceeeEEcCCCh--hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEeccccee
Confidence            3455677788888887  5788888999999998  22211111111                                 


Q ss_pred             --ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          258 --HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       258 --~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                        ......++++++|+|+|.+||.|+.|+.|++|.+..
T Consensus       441 v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  441 VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence              001257899999999999999999999999998753

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.4e-25  Score=155.37  Aligned_cols=221  Identities=18%  Similarity=0.208  Sum_probs=154.1

Q ss_pred             ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE--EEeeccCCCCCceeEEEEecCCCceEEeeecCCcE
Q 022590           47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV  124 (294)
Q Consensus        47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i  124 (294)
                      ..+++|.+.|++++|+. +++.|++++.|++|++|+++.-...  +.+.. .-.-+..+.+.|.|+-..+++++-...++
T Consensus        80 ~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEE
Confidence            45689999999999999 9999999999999999999753211  11110 00123468899999555666666677789


Q ss_pred             EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCC
Q 022590          125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEG  202 (294)
Q Consensus       125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  202 (294)
                      ++|.+...... ...+.+...          .....-..|.-.+..+-.  .+.++++++.|..|.+|+++ ++      
T Consensus       158 ~vyk~~K~~dG-~~~~~~v~~----------D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq------  219 (420)
T KOG2096|consen  158 CVYKLVKKTDG-SGSHHFVHI----------DNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ------  219 (420)
T ss_pred             EEEEeeecccC-CCCcccccc----------cccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc------
Confidence            99988763220 000000000          000111223333333322  37799999999999999998 43      


Q ss_pred             CceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC---CCc-eeeeeccccccCCCeEEEEEccCCCEEE
Q 022590          203 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS---SPP-VLIARLSHAQSKSPIRQTAMSYDGSTIL  278 (294)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~  278 (294)
                         .+..+......-+..+.||+|  +++++++-.-.|++|.+--   ++. .....+...+|...|..++|+++...++
T Consensus       220 ---~L~~idtnq~~n~~aavSP~G--RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v  294 (420)
T KOG2096|consen  220 ---LLQSIDTNQSSNYDAAVSPDG--RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV  294 (420)
T ss_pred             ---eeeeeccccccccceeeCCCC--cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence               466666666667778999999  6899998888999999732   211 1222333559999999999999999999


Q ss_pred             EeccCCcEEEEecC
Q 022590          279 SCCEDGAIWRWDAI  292 (294)
Q Consensus       279 s~~~dg~i~vw~~~  292 (294)
                      +.+.||+++|||+.
T Consensus       295 tvSkDG~wriwdtd  308 (420)
T KOG2096|consen  295 TVSKDGKWRIWDTD  308 (420)
T ss_pred             EEecCCcEEEeecc
Confidence            99999999999985

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.94  E-value=2.1e-24  Score=157.99  Aligned_cols=255  Identities=23%  Similarity=0.336  Sum_probs=166.6

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc---------ccceecccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---------LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i   78 (294)
                      .++|+.+.|.  ++..+.+++|+.|..|++|.+..+.         ....+..|..+|+++.|+| ++++|++|+.+|.|
T Consensus        13 ~~pv~s~dfq--~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v   89 (434)
T KOG1009|consen   13 HEPVYSVDFQ--KNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEV   89 (434)
T ss_pred             CCceEEEEec--cCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceE
Confidence            4689999997  4444479999999999999886432         2345678999999999999 99999999999999


Q ss_pred             EEEEcC--------C-----CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590           79 RLWNVQ--------T-----GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL  145 (294)
Q Consensus        79 ~vwd~~--------~-----~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  145 (294)
                      .+|-..        +     .+.-.......+|...|..++|+| ++.++++++.|..+++||+..+.            
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~------------  156 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQ------------  156 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccce------------
Confidence            999765        2     111222223347999999999999 99999999999999999999843            


Q ss_pred             CCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCC-------------------------
Q 022590          146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS-------------------------  198 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~-------------------------  198 (294)
                                 ....+..|...+..++|+  ++++++-+.|...+.+.+......                         
T Consensus       157 -----------l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfh  225 (434)
T KOG1009|consen  157 -----------LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFH  225 (434)
T ss_pred             -----------eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeee
Confidence                       233334444444444443  333333333332222221111000                         


Q ss_pred             -----------------------------------------CCCCCceeeeeeecCCCCeeEEEEccc------------
Q 022590          199 -----------------------------------------PGEGTADILQKYPVPECDIWFIKFSCD------------  225 (294)
Q Consensus       199 -----------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~------------  225 (294)
                                                               .......+...++....+...+.|+|-            
T Consensus       226 DeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~  305 (434)
T KOG1009|consen  226 DETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF  305 (434)
T ss_pred             cCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc
Confidence                                                     000011123333334444444555441            


Q ss_pred             ---CCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          226 ---FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       226 ---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                         -.++++++-...+.|++||.++..+.....-   .|-..|+.++|++||.+|+..|.||...+--++
T Consensus       306 ~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n---ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe  372 (434)
T KOG1009|consen  306 LFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN---IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFE  372 (434)
T ss_pred             ccccccceEEEEeecceEEEeccccccceEEEee---eeeeeecceeecCCCcEEEEeccCCceEEEEEc
Confidence               0112333333456799999998775444332   566789999999999999999999987765554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.94  E-value=2.2e-24  Score=151.59  Aligned_cols=254  Identities=18%  Similarity=0.277  Sum_probs=191.7

Q ss_pred             CceeEEEEEeecCCCceEEEEeec----CCeEEEEEcC--Ccccccee-cccCcceEEEEeCCCC----CceEEEeeCCC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGI----NGIIRVIDVS--NEKLHKSF-VGHGDSINEIRTQPLK----PSLVVSASKDE   76 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~----dg~i~iw~~~--~~~~~~~~-~~h~~~v~~~~~~~~~----~~~l~s~~~dg   76 (294)
                      .-+++++.|+..|+.+.+||.|+.    .+.|.|..++  +++.+..- ..|.-+++.+.|.|+.    .++||+.+  -
T Consensus        44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D  121 (364)
T KOG0290|consen   44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--D  121 (364)
T ss_pred             CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--C
Confidence            357899999988888878999984    4667776654  33332211 3588999999999942    24666654  4


Q ss_pred             cEEEEEcCCCceEEE----e--eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590           77 SVRLWNVQTGICILI----F--AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  150 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~----~--~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (294)
                      .+|+|.+...+....    +  .....+..+++++.|+..+.+++.+++-|-+..+||+..+..                
T Consensus       122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~----------------  185 (364)
T KOG0290|consen  122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS----------------  185 (364)
T ss_pred             eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc----------------
Confidence            799999874221111    1  112246789999999998999999999999999999998310                


Q ss_pred             CceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC
Q 022590          151 TKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH  227 (294)
Q Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  227 (294)
                          ......+..|...|..++|.   -+.|++.+.||.+|+||+|..+      +...+.+-+.+..+...++|++...
T Consensus       186 ----~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le------HSTIIYE~p~~~~pLlRLswnkqDp  255 (364)
T KOG0290|consen  186 ----GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE------HSTIIYEDPSPSTPLLRLSWNKQDP  255 (364)
T ss_pred             ----cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc------cceEEecCCCCCCcceeeccCcCCc
Confidence                11245678899999999997   4789999999999999999876      5556666666667888899988775


Q ss_pred             cceEEEEc-CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC-CCEEEEeccCCcEEEEecCC
Q 022590          228 YNAAAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       228 ~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~vw~~~~  293 (294)
                       +++|+-. ....|.+.|++... ....++.  .|++.|+.++|.|. ...|.|++.|..+.+||+..
T Consensus       256 -nymATf~~dS~~V~iLDiR~P~-tpva~L~--~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q  319 (364)
T KOG0290|consen  256 -NYMATFAMDSNKVVILDIRVPC-TPVARLR--NHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ  319 (364)
T ss_pred             -hHHhhhhcCCceEEEEEecCCC-cceehhh--cCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence             5676644 45679999999874 3444555  89999999999996 46899999999999999864

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.94  E-value=1.3e-24  Score=158.58  Aligned_cols=231  Identities=20%  Similarity=0.322  Sum_probs=170.9

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-------cccceecccCcceEEEEeCCCCCceEEEeeCCC
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE   76 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg   76 (294)
                      +.+|.++|..++|++..|  +.+|+|+.|.+|.||.+..+       +++..+.+|...|--++|+|.-.+.|++++.|.
T Consensus        77 v~GHt~~vLDi~w~PfnD--~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn  154 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFND--CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN  154 (472)
T ss_pred             ccCccccccccccCccCC--ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence            458999999999995544  37999999999999998765       346678899999999999998889999999999


Q ss_pred             cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      +|.+||+.+|+.+..+.    |...|+++.|+. ++.+|++.+.|..|+|||.+.+                       .
T Consensus       155 ~v~iWnv~tgeali~l~----hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~-----------------------~  206 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD----HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRG-----------------------T  206 (472)
T ss_pred             eEEEEeccCCceeeecC----CCCeEEEEEecc-CCceeeeecccceeEEEcCCCC-----------------------c
Confidence            99999999999988876    999999999998 9999999999999999999983                       3


Q ss_pred             ceEEeecCCCce-eecce--ecceEEEee---CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590          157 PVFIASVHSNYV-DCNRW--LGDFILSKS---VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA  230 (294)
Q Consensus       157 ~~~~~~~~~~~i-~~~~~--~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  230 (294)
                      .+....+|.+.= ..+.|  ++..+-+|.   .+..+-+||....+..      ..+.++... ..|.---+.++.+ -+
T Consensus       207 ~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP------~~~~elDtS-nGvl~PFyD~dt~-iv  278 (472)
T KOG0303|consen  207 VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP------IALQELDTS-NGVLLPFYDPDTS-IV  278 (472)
T ss_pred             EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc------ceeEEeccC-CceEEeeecCCCC-EE
Confidence            344444555421 22233  255333332   3678999999877642      233444433 3344444566664 45


Q ss_pred             EEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590          231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD  273 (294)
Q Consensus       231 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (294)
                      .++|-.|+.|+.|.+....+. +..+..-....+=+.+.|-|.
T Consensus       279 Yl~GKGD~~IRYyEit~d~P~-~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  279 YLCGKGDSSIRYFEITNEPPF-VHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             EEEecCCcceEEEEecCCCce-eEEecccccCCcccccccccc
Confidence            567888999999999887642 333332233345566666664

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.94  E-value=5.4e-25  Score=165.32  Aligned_cols=209  Identities=14%  Similarity=0.275  Sum_probs=174.5

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  104 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  104 (294)
                      |+++|+..+.|+|||+....+.+.+++|+..|+++.++. ...+||+++..|.|.|..+.++.....|..  +....|.-
T Consensus        93 y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~--~sgqsvRl  169 (673)
T KOG4378|consen   93 YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTI--DSGQSVRL  169 (673)
T ss_pred             eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceec--CCCCeEEE
Confidence            999999999999999997778888999999999999998 778999999999999999999988877773  23456779


Q ss_pred             EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece-EEeecCCCceeeccee---cceEEE
Q 022590          105 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV-FIASVHSNYVDCNRWL---GDFILS  180 (294)
Q Consensus       105 l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~---~~~l~~  180 (294)
                      +.|+|....+|.+++.+|.|.+||+..                       ..|. .....|..+...++|+   ..+|++
T Consensus       170 l~ys~skr~lL~~asd~G~VtlwDv~g-----------------------~sp~~~~~~~HsAP~~gicfspsne~l~vs  226 (673)
T KOG4378|consen  170 LRYSPSKRFLLSIASDKGAVTLWDVQG-----------------------MSPIFHASEAHSAPCRGICFSPSNEALLVS  226 (673)
T ss_pred             eecccccceeeEeeccCCeEEEEeccC-----------------------CCcccchhhhccCCcCcceecCCccceEEE
Confidence            999998888899999999999999998                       3333 3456799999999997   678999


Q ss_pred             eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccc
Q 022590          181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ  260 (294)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  260 (294)
                      .+.|..|.+||.+....         ...+. -..+...++|.++|  .+|++|...|.|..||++..+. ++..+.  .
T Consensus       227 VG~Dkki~~yD~~s~~s---------~~~l~-y~~Plstvaf~~~G--~~L~aG~s~G~~i~YD~R~~k~-Pv~v~s--a  291 (673)
T KOG4378|consen  227 VGYDKKINIYDIRSQAS---------TDRLT-YSHPLSTVAFSECG--TYLCAGNSKGELIAYDMRSTKA-PVAVRS--A  291 (673)
T ss_pred             ecccceEEEeecccccc---------cceee-ecCCcceeeecCCc--eEEEeecCCceEEEEecccCCC-CceEee--e
Confidence            99999999999986542         22222 24568899999999  6999999999999999998753 333333  6


Q ss_pred             cCCCeEEEEEccCC
Q 022590          261 SKSPIRQTAMSYDG  274 (294)
Q Consensus       261 ~~~~v~~~~~s~~~  274 (294)
                      |...|++++|-|..
T Consensus       292 h~~sVt~vafq~s~  305 (673)
T KOG4378|consen  292 HDASVTRVAFQPSP  305 (673)
T ss_pred             cccceeEEEeeecc
Confidence            77889999998764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.94  E-value=6.8e-25  Score=170.61  Aligned_cols=272  Identities=16%  Similarity=0.187  Sum_probs=201.7

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-----------------------------------------
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-----------------------------------------   43 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----------------------------------------   43 (294)
                      -+|++-|+++.|.  |.+. .|++++.|.++.+|..++.                                         
T Consensus       264 ~GHeDWV~sv~W~--p~~~-~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~  340 (764)
T KOG1063|consen  264 MGHEDWVYSVWWH--PEGL-DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF  340 (764)
T ss_pred             cCcccceEEEEEc--cchh-hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence            3899999999997  8886 7999999999999976432                                         


Q ss_pred             -----------cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC-CCceEEEeeccCCCCCceeEEEEecCC
Q 022590           44 -----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSD  111 (294)
Q Consensus        44 -----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~  111 (294)
                                 .+...+.+|.+.|++++|.| .+.+|++.+.|.+-|++-.- ....-..+..++-|.-.++|++|-+ +
T Consensus       341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~  418 (764)
T KOG1063|consen  341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-E  418 (764)
T ss_pred             EEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-C
Confidence                       01122357999999999999 89999999999999998654 2222344444456888999999997 6


Q ss_pred             CceEEeeecCCcEEEEeccccc----------ccccc----------ceeecC-------------------CCCCC-C-
Q 022590          112 IYRIASCGMDNTVKIWSMKEFW----------TYVEK----------SFTWTD-------------------LPSKF-P-  150 (294)
Q Consensus       112 ~~~l~~~~~dg~i~~wd~~~~~----------~~~~~----------~~~~~~-------------------~~~~~-~-  150 (294)
                      ...|++|.....+|+|+....-          .....          .+....                   .+... + 
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence            8889999999999999986510          00000          000000                   00000 0 


Q ss_pred             ------------CceeeeceEEeecCCCceeeccee--cceEEEeeCCC-----eEEEecCCCCCCCCCCCCceeeeeee
Q 022590          151 ------------TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN-----EIVLWEPKMKEQSPGEGTADILQKYP  211 (294)
Q Consensus       151 ------------~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~  211 (294)
                                  ....-..+..+.+|...|.+++.+  ++++++++...     .|++|+..+..         ..+.+.
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~---------~~~~L~  569 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL---------QVQELE  569 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh---------hhheec
Confidence                        000111234567899999999997  89999987643     59999998665         456788


Q ss_pred             cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          212 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      .|.-.|+.++|+|++  .+|++.+.|.++.+|........ ...+. ...|..-|.++.|+|++.+++|+|.|.+|+||.
T Consensus       570 ~HsLTVT~l~FSpdg--~~LLsvsRDRt~sl~~~~~~~~~-e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  570 GHSLTVTRLAFSPDG--RYLLSVSRDRTVSLYEVQEDIKD-EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             ccceEEEEEEECCCC--cEEEEeecCceEEeeeeecccch-hhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            899999999999999  69999999999999998655321 22211 447888999999999999999999999999998


Q ss_pred             cCC
Q 022590          291 AIP  293 (294)
Q Consensus       291 ~~~  293 (294)
                      ...
T Consensus       647 ~~~  649 (764)
T KOG1063|consen  647 EPD  649 (764)
T ss_pred             ccC
Confidence            753

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=2.9e-25  Score=159.07  Aligned_cols=247  Identities=19%  Similarity=0.262  Sum_probs=174.0

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC-CCceEEEeeCCCcEEEEEcCCCceEEEeec---------
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAG---------   94 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------   94 (294)
                      .+|++.++|.|++||..+++.+..++++...++.++|... ....+.+|+.||+|++||++.......+..         
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            6999999999999999999999999999999999999764 467899999999999999985432211110         


Q ss_pred             ---------------------------------------cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccc
Q 022590           95 ---------------------------------------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY  135 (294)
Q Consensus        95 ---------------------------------------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  135 (294)
                                                             ...|...|++++|+|.++++|++|+.||.+.+||+..... 
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-  200 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-  200 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc-
Confidence                                                   0168899999999999999999999999999999987311 


Q ss_pred             cccceeecCCCCCCCCceeeeceEEeecCCCceeecceecc---eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec
Q 022590          136 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD---FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV  212 (294)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  212 (294)
                                         ..++.....|...|.++.|.++   .+.+-+...+..+|+++.+.................
T Consensus       201 -------------------eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r  261 (376)
T KOG1188|consen  201 -------------------EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR  261 (376)
T ss_pred             -------------------hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence                               2344555668888999999732   688889999999999998764222111100000000


Q ss_pred             CCCC-eeEE-EEcccCCcceEEEEcCCCeEEEEeccC---CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590          213 PECD-IWFI-KFSCDFHYNAAAIGNREGKIFVWELQS---SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW  287 (294)
Q Consensus       213 ~~~~-i~~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  287 (294)
                      .... -+-+ ..+|.......+.|+.-|...++-+..   +...........+|...|+++.|...+.++.||++||.+.
T Consensus       262 ~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~  341 (376)
T KOG1188|consen  262 KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQ  341 (376)
T ss_pred             hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEE
Confidence            0000 0111 233444433444444466666665543   2211122222445778899999999999999999999999


Q ss_pred             EEec
Q 022590          288 RWDA  291 (294)
Q Consensus       288 vw~~  291 (294)
                      +|..
T Consensus       342 ~Wk~  345 (376)
T KOG1188|consen  342 AWKV  345 (376)
T ss_pred             EEec
Confidence            9984

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=3e-24  Score=159.65  Aligned_cols=246  Identities=14%  Similarity=0.195  Sum_probs=187.5

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccc--eecccC-cceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK--SFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      +-+|.+.+|+  |+|...+++++....++.||+.+.+..+  ...++. ..+.....++ ++++|+..+..|.|.+....
T Consensus       257 ~fPi~~a~f~--p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhak  333 (514)
T KOG2055|consen  257 KFPIQKAEFA--PNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAK  333 (514)
T ss_pred             cCccceeeec--CCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhh
Confidence            4678888887  8898789999999999999998876433  334443 4577788899 88999999999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      +++.+..++    -.+.|..++|+. ++..|++++.+|.|.+||+++.                       ..+..+. .
T Consensus       334 T~eli~s~K----ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~-----------------------~~~~rf~-D  384 (514)
T KOG2055|consen  334 TKELITSFK----IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQN-----------------------SCLHRFV-D  384 (514)
T ss_pred             hhhhhheee----eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCc-----------------------ceEEEEe-e
Confidence            999999998    788999999997 7788888888999999999983                       1222222 1


Q ss_pred             CCce----eecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc--CCC
Q 022590          165 SNYV----DCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REG  238 (294)
Q Consensus       165 ~~~i----~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg  238 (294)
                      .+.|    .|++.++.+||+|+..|.|.|||.++.....   ...++..+..-...|+++.|+|+..  +|+.++  .+.
T Consensus       385 ~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~---~PkPik~~dNLtt~Itsl~Fn~d~q--iLAiaS~~~kn  459 (514)
T KOG2055|consen  385 DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST---NPKPIKTVDNLTTAITSLQFNHDAQ--ILAIASRVKKN  459 (514)
T ss_pred             cCccceeeeeecCCCceEEeccCcceEEEeccchhhccC---CCCchhhhhhhheeeeeeeeCcchh--hhhhhhhcccc
Confidence            2222    2344458999999999999999976543221   2234455555566799999999995  555544  577


Q ss_pred             eEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          239 KIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .+++-.+.+..  ....++ ....-+.|+||+|||.+.+||.|.++|.+.+|.+.
T Consensus       460 alrLVHvPS~T--VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  460 ALRLVHVPSCT--VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ceEEEecccee--eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            89999887754  222222 12334679999999999999999999999999874

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.93  E-value=1.2e-24  Score=155.23  Aligned_cols=259  Identities=15%  Similarity=0.204  Sum_probs=181.9

Q ss_pred             cccCceeEEEEEe-ecCCCce-EEEEeecCCeEEEEEcCCccc---cceec--ccCcceEEEEeCCC---CCceEEEeeC
Q 022590            5 DQKEESFYTVSWA-CNVDGIP-FLVAGGINGIIRVIDVSNEKL---HKSFV--GHGDSINEIRTQPL---KPSLVVSASK   74 (294)
Q Consensus         5 ~~h~~~v~~~~~~-~~~~~~~-~l~~~~~dg~i~iw~~~~~~~---~~~~~--~h~~~v~~~~~~~~---~~~~l~s~~~   74 (294)
                      ++|..+|+.++|+ +.-.+.+ .+|+.+. ..+.+|+.....-   ++.+.  .|......++|+-+   ...++|+|+.
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~  113 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY  113 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence            4888999999998 3322322 4555554 5899998765432   23332  36777888888763   2458999999


Q ss_pred             CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590           75 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  154 (294)
Q Consensus        75 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (294)
                      -|.|+|.|+.+++....+.   +|...|+.|.++|.+.+++++++.|..|++|++++...                    
T Consensus       114 ~GvIrVid~~~~~~~~~~~---ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C--------------------  170 (385)
T KOG1034|consen  114 LGVIRVIDVVSGQCSKNYR---GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC--------------------  170 (385)
T ss_pred             eeEEEEEecchhhhcccee---ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE--------------------
Confidence            9999999999999999888   79999999999998889999999999999999998321                    


Q ss_pred             eeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC-------------------CCceeeeeeecC
Q 022590          155 QFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE-------------------GTADILQKYPVP  213 (294)
Q Consensus       155 ~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------------~~~~~~~~~~~~  213 (294)
                      -.......+|.+.|.++.|+  ++++++++.|..|++|++...+.....                   .+......-..|
T Consensus       171 v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH  250 (385)
T KOG1034|consen  171 VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH  250 (385)
T ss_pred             EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence            11233567899999999998  889999999999999999844221000                   000011122233


Q ss_pred             CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC-Cc-----------eeeeeccccccCCCeEE--EEEccCCCEEEE
Q 022590          214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-PP-----------VLIARLSHAQSKSPIRQ--TAMSYDGSTILS  279 (294)
Q Consensus       214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~-----------~~~~~~~~~~~~~~v~~--~~~s~~~~~l~s  279 (294)
                      ...|.++.|--    +++++-+-++.|..|..... +.           ....++.  -....|.-  .+|.|-++.||.
T Consensus       251 rnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~--~~~c~iWfirf~~d~~~~~la~  324 (385)
T KOG1034|consen  251 RNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD--YPMCDIWFIRFAFDPWQKMLAL  324 (385)
T ss_pred             cchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec--cCccceEEEEEeecHHHHHHhh
Confidence            34444444432    47888888999999987221 11           1111122  12233444  455677899999


Q ss_pred             eccCCcEEEEecCC
Q 022590          280 CCEDGAIWRWDAIP  293 (294)
Q Consensus       280 ~~~dg~i~vw~~~~  293 (294)
                      |.+.|.|++||++.
T Consensus       325 gnq~g~v~vwdL~~  338 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDN  338 (385)
T ss_pred             ccCCCcEEEEECCC
Confidence            99999999999975

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.3e-23  Score=168.35  Aligned_cols=241  Identities=15%  Similarity=0.203  Sum_probs=184.3

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~   86 (294)
                      +.+.|.+++..    +. +|++|+.+++|.+|...+++.-..+...+-++++++|+. ++.++|.|+.|-.|++-++...
T Consensus        55 ~g~~v~~ia~~----s~-~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~  128 (933)
T KOG1274|consen   55 SGELVSSIACY----SN-HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDS  128 (933)
T ss_pred             cCceeEEEeec----cc-ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEecccc
Confidence            66777777763    44 899999999999999999888777777888999999999 9999999999999999999999


Q ss_pred             ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590           87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  166 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (294)
                      .....+.   +|.++|.++.|+| .+++||+.+.||.|++||+.++.......    .......           .....
T Consensus       129 s~~~~lr---gh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~----~v~k~n~-----------~~~s~  189 (933)
T KOG1274|consen  129 SQEKVLR---GHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLT----GVDKDNE-----------FILSR  189 (933)
T ss_pred             chheeec---ccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcc----cCCcccc-----------ccccc
Confidence            8888888   7999999999999 99999999999999999999743322111    1000000           00134


Q ss_pred             ceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          167 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       167 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      .+..++|+  +..++..+.|+.|++|+....+...      .++ ...+...+..+.|+|.|  .|||+++.+|.|.|||
T Consensus       190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f------~Lr-~~~~ss~~~~~~wsPnG--~YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF------KLR-DKLSSSKFSDLQWSPNG--KYIAASTLDGQILVWN  260 (933)
T ss_pred             eeeeeeecCCCCeEEeeccCCeEEEEccCCceehe------eec-ccccccceEEEEEcCCC--cEEeeeccCCcEEEEe
Confidence            45566676  6788888999999999998876311      111 12233448899999998  6999999999999999


Q ss_pred             ccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEE
Q 022590          245 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW  289 (294)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw  289 (294)
                      .++.+.   .     .....|.+++|.|+.+.+-.-...|...+|
T Consensus       261 v~t~~~---~-----~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  261 VDTHER---H-----EFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             cccchh---c-----cccceeEEEecCCCCCeeEEEeeccccccC
Confidence            998321   1     233579999999998766555555544433

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.93  E-value=7.1e-24  Score=149.00  Aligned_cols=247  Identities=15%  Similarity=0.281  Sum_probs=180.7

Q ss_pred             ccCceeEEEEEeecCCCce--EEEEeecCCeEEEEEcCCcc----cccee-----cccCcceEEEEeCCCCCceEEEeeC
Q 022590            6 QKEESFYTVSWACNVDGIP--FLVAGGINGIIRVIDVSNEK----LHKSF-----VGHGDSINEIRTQPLKPSLVVSASK   74 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~--~l~~~~~dg~i~iw~~~~~~----~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~~~   74 (294)
                      +|.-+++.+.|.+++.|..  +||+. .| .+|+|.+....    +...+     ..+.+++++..|+..+.+++.+.+-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs-~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATS-SD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcc-cC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            6888999999997665431  34444 34 79999987421    11111     2366799999999989999999999


Q ss_pred             CCcEEEEEcCCCce---EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           75 DESVRLWNVQTGIC---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        75 dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      |-+..|||++++..   ...+.   .|..+|..++|...+...||+.+.||.+|+||+|.....                
T Consensus       172 DTTCTiWdie~~~~~~vkTQLI---AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS----------------  232 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLI---AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS----------------  232 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEE---ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc----------------
Confidence            99999999998733   23333   699999999999866789999999999999999983211                


Q ss_pred             ceeeeceEEeecCCCceeeccee---cceEEEeeCC-CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVD-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH  227 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  227 (294)
                          ..++.-.....+...++|+   .+++++-..| ..|.+.|+|...        ..+..+..|...|+.++|.|...
T Consensus       233 ----TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------tpva~L~~H~a~VNgIaWaPhS~  300 (364)
T KOG0290|consen  233 ----TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------TPVARLRNHQASVNGIAWAPHSS  300 (364)
T ss_pred             ----eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC--------cceehhhcCcccccceEecCCCC
Confidence                1111222224667778886   6788876655 569999999854        37888999999999999999987


Q ss_pred             cceEEEEcCCCeEEEEeccCCCc--eeeeeccccccCCCeEEEEEcc-CCCEEEEeccCCcEEE
Q 022590          228 YNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWR  288 (294)
Q Consensus       228 ~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~v  288 (294)
                       ..+++++.|..+.+||+...-.  .....+.. ...+.|+.+.|++ .+.+++.+.. +++.+
T Consensus       301 -~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  301 -SHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             -ceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEec-CeeeE
Confidence             7999999999999999986422  11111111 2346799999996 4567777754 34444

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.93  E-value=1.1e-24  Score=168.60  Aligned_cols=122  Identities=15%  Similarity=0.246  Sum_probs=101.5

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc------ceecccCcceEEEEeCCCCCceEEEeeCCC
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH------KSFVGHGDSINEIRTQPLKPSLVVSASKDE   76 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg   76 (294)
                      .+-.|.+.|+.+.|++-.|+  +||+++.|..|+||.+..+-..      ..+.+..-.|.++.|+|....+|+++. .|
T Consensus        74 ~l~~H~d~VtDl~FspF~D~--LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a-~g  150 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADE--LLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA-HG  150 (1012)
T ss_pred             eeecccceeeccCccccchh--hhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc-Cc
Confidence            45689999999999965555  7999999999999999744211      122334457899999997666777665 49


Q ss_pred             cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      ++.|||+.+++.+..+.   +|...|.+..|+. ++.+|++++.|..|+|||.+.
T Consensus       151 ~v~i~D~stqk~~~el~---~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELS---GHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             eEEEEEcccCceeeccc---CCchhhhcccccc-CCceEeeecCCcceEEeCCcc
Confidence            99999999999988887   7999999999998 999999999999999999886

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.93  E-value=2.1e-24  Score=149.55  Aligned_cols=259  Identities=14%  Similarity=0.162  Sum_probs=191.7

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      .|..|...|+++.|.  .++  +|.+|..-|.|++|++.+.+....+. .|...|+.+.-.| + ..|.+-+.|+.+.+|
T Consensus         9 vLRp~~~~v~s~~fq--a~~--rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p-~-d~l~tqgRd~~L~lw   82 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQ--ANE--RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP-N-DSLDTQGRDPLLILW   82 (323)
T ss_pred             Eeccccchheehhhc--cch--hhhcccccceEEEEEeecCccchhhhhhccceeeceeecC-C-cchhhcCCCceEEEE
Confidence            456899999999995  444  69999999999999999999888888 6788999999999 4 568889999999999


Q ss_pred             EcCCCceEEEeec---------------------------c-----------------------CCCCCceeEEEEecCC
Q 022590           82 NVQTGICILIFAG---------------------------A-----------------------GGHRNEVLSVDFHPSD  111 (294)
Q Consensus        82 d~~~~~~~~~~~~---------------------------~-----------------------~~~~~~v~~l~~~~~~  111 (294)
                      ++.-+..+..-..                           .                       .+..+.+.+..+....
T Consensus        83 ~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c  162 (323)
T KOG0322|consen   83 TIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC  162 (323)
T ss_pred             EccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence            9865322111000                           0                       0122335555543222


Q ss_pred             --CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeE
Q 022590          112 --IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI  187 (294)
Q Consensus       112 --~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i  187 (294)
                        .-++++|.++|.+.+||+............             ..-......|..+|.++.|.  -+.=++|+.+..+
T Consensus       163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~-------------~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl  229 (323)
T KOG0322|consen  163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS-------------SKVESPNASHKQPVLSLDYASSCDRGISGGADDKL  229 (323)
T ss_pred             cceEEEEEeccCCeEEEEEccCCceeeccccc-------------cccccchhhccCcceeeeechhhcCCcCCCccccc
Confidence              245778889999999999985322221111             22344566789999999986  3344667777788


Q ss_pred             EEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEE
Q 022590          188 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ  267 (294)
Q Consensus       188 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  267 (294)
                      ..|.++....     ..+.-.+.......+..+.+-||+  .++|+++.|+.||+|+.++.++..+.+    -|...|++
T Consensus       230 ~~~Sl~~s~g-----slq~~~e~~lknpGv~gvrIRpD~--KIlATAGWD~RiRVyswrtl~pLAVLk----yHsagvn~  298 (323)
T KOG0322|consen  230 VMYSLNHSTG-----SLQIRKEITLKNPGVSGVRIRPDG--KILATAGWDHRIRVYSWRTLNPLAVLK----YHSAGVNA  298 (323)
T ss_pred             eeeeeccccC-----cccccceEEecCCCccceEEccCC--cEEeecccCCcEEEEEeccCCchhhhh----hhhcceeE
Confidence            8898875432     222334445556778899999999  599999999999999999998654443    56689999


Q ss_pred             EEEccCCCEEEEeccCCcEEEEec
Q 022590          268 TAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       268 ~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ++|+|+...+|+++.|+.|.+|++
T Consensus       299 vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  299 VAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999986

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.93  E-value=2.8e-24  Score=161.49  Aligned_cols=240  Identities=15%  Similarity=0.211  Sum_probs=176.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc--cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      .+++++|.  ....-.+++.+.|..+++|.-...  +....-+...+.-.|++... -..++++|+..+.|+|||++...
T Consensus        36 g~~s~~w~--~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl  112 (673)
T KOG4378|consen   36 GDFSFNWQ--RRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS-QSLYEISGGQSGCVKIWDLRAKL  112 (673)
T ss_pred             cceeeecc--ccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh-cceeeeccCcCceeeehhhHHHH
Confidence            48899997  444223445567788999974322  11111111122334554444 34799999999999999998666


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC-CC
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SN  166 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  166 (294)
                      +.+.++   +|...|+++.++. ...+||+++..|.|.+..+.+...                       ...+... ..
T Consensus       113 ~hr~lk---dh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~-----------------------tt~f~~~sgq  165 (673)
T KOG4378|consen  113 IHRFLK---DHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQK-----------------------TTTFTIDSGQ  165 (673)
T ss_pred             Hhhhcc---CCcceeEEEEecC-CcceeEEeccCCcEEEEecccCcc-----------------------ccceecCCCC
Confidence            666666   7999999999998 778899999999999999988321                       2222222 23


Q ss_pred             ceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590          167 YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       167 ~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~  243 (294)
                      .|.-+.|+   ..+|.+++.+|.|.+||+.....        .......|..+...++|+|... .+|++-+.|..|.+|
T Consensus       166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--------~~~~~~~HsAP~~gicfspsne-~l~vsVG~Dkki~~y  236 (673)
T KOG4378|consen  166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--------IFHASEAHSAPCRGICFSPSNE-ALLVSVGYDKKINIY  236 (673)
T ss_pred             eEEEeecccccceeeEeeccCCeEEEEeccCCCc--------ccchhhhccCCcCcceecCCcc-ceEEEecccceEEEe
Confidence            44566665   45788899999999999986542        4455567888889999999986 688999999999999


Q ss_pred             eccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |....+.  ...+..   ..|...++|+++|.+|+.|+..|.|..||++.
T Consensus       237 D~~s~~s--~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  237 DIRSQAS--TDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             ecccccc--cceeee---cCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            9997653  333322   25799999999999999999999999999975

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.93  E-value=3e-23  Score=164.50  Aligned_cols=257  Identities=13%  Similarity=0.097  Sum_probs=188.9

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc--ccee----cccCcceEEEEeCCCCCc--eEEEeeCCCcE
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSF----VGHGDSINEIRTQPLKPS--LVVSASKDESV   78 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~----~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i   78 (294)
                      -..+|.|++|+  |....++|.|+.+|.|.+||+..+..  ...+    ..|..+|+.+.|.. +..  -+++++.||.|
T Consensus       241 ~~s~v~~~~f~--p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i  317 (555)
T KOG1587|consen  241 SPSEVTCLKFC--PFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSI  317 (555)
T ss_pred             cCCceeEEEec--cCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcE
Confidence            35678888988  65555999999999999999987654  2222    35889999999977 433  48999999999


Q ss_pred             EEEEcCCCceEEE---eecc------CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCC
Q 022590           79 RLWNVQTGICILI---FAGA------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF  149 (294)
Q Consensus        79 ~vwd~~~~~~~~~---~~~~------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  149 (294)
                      ..|+++.-.....   ....      ..-...+++++|.+.+.+.|+.|+.+|.|..-.-........            
T Consensus       318 ~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------------  385 (555)
T KOG1587|consen  318 CSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------------  385 (555)
T ss_pred             eeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc------------
Confidence            9998864322111   0000      012346899999998899999999999988744333211110            


Q ss_pred             CCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccC
Q 022590          150 PTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF  226 (294)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  226 (294)
                         ....+......|.++|.++.++   ...|++++ |.+++||.......        ++..+..+...+++++|||..
T Consensus       386 ---~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~--------Pl~~~~~~~~~v~~vaWSptr  453 (555)
T KOG1587|consen  386 ---VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS--------PLLSLDSSPDYVTDVAWSPTR  453 (555)
T ss_pred             ---ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC--------cchhhhhccceeeeeEEcCcC
Confidence               1123345677799999999987   44555555 99999999873221        445555555669999999987


Q ss_pred             CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          227 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      . ..++++..+|.+.+||+............  .+....+.+.|+++|+.|+.|...|.+++|++.+
T Consensus       454 p-avF~~~d~~G~l~iWDLl~~~~~Pv~s~~--~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  454 P-AVFATVDGDGNLDIWDLLQDDEEPVLSQK--VCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             c-eEEEEEcCCCceehhhhhccccCCccccc--ccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            6 68999999999999999887655555554  3356778889999999999999999999999853

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.92  E-value=6.3e-23  Score=144.22  Aligned_cols=251  Identities=14%  Similarity=0.197  Sum_probs=185.4

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecC-------CeEEEEEcCCc---------cccceec-ccCcceEEEEeCCCCCc
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGIN-------GIIRVIDVSNE---------KLHKSFV-GHGDSINEIRTQPLKPS   67 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~d-------g~i~iw~~~~~---------~~~~~~~-~h~~~v~~~~~~~~~~~   67 (294)
                      ..|.+.|..++-+  |..+.+|++...+       ..+.||.+...         +++..+. .+-+.|.|+.|.| ++.
T Consensus        60 ~h~agEvw~las~--P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P-ns~  136 (370)
T KOG1007|consen   60 FHHAGEVWDLASS--PFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP-NSD  136 (370)
T ss_pred             hcCCcceehhhcC--CCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC-CCC
Confidence            3567888888877  6555477776553       24779988643         2334443 4556899999999 777


Q ss_pred             eEEEeeCCCcEEEEEcCCCce-EEEeec--cCCCCCceeEEEEec-CCCceEEeeecCCcEEEEeccccccccccceeec
Q 022590           68 LVVSASKDESVRLWNVQTGIC-ILIFAG--AGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT  143 (294)
Q Consensus        68 ~l~s~~~dg~i~vwd~~~~~~-~~~~~~--~~~~~~~v~~l~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  143 (294)
                      .+++-. |..|.+|++..+.. ...+..  ..++....++-+|+| .+++.+++.+ |++++.||+|+..          
T Consensus       137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~----------  204 (370)
T KOG1007|consen  137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK----------  204 (370)
T ss_pred             eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchh----------
Confidence            777766 78999999987765 333321  124566788899999 5777777665 8999999999842          


Q ss_pred             CCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE
Q 022590          144 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI  220 (294)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  220 (294)
                                  .....-..|...|..+.|+   ..+|++|+.||.|++||.|..+.        ++++++.|...++++
T Consensus       205 ------------~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--------pv~el~~HsHWvW~V  264 (370)
T KOG1007|consen  205 ------------KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--------PVQELPGHSHWVWAV  264 (370)
T ss_pred             ------------hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--------cccccCCCceEEEEE
Confidence                        2233446688889999998   44899999999999999998654        788899999999999


Q ss_pred             EEcccCCcceEEEEcCCCeEEEEeccCCC------------------------ceeeeec-cccccCCCeEEEEEccCCC
Q 022590          221 KFSCDFHYNAAAIGNREGKIFVWELQSSP------------------------PVLIARL-SHAQSKSPIRQTAMSYDGS  275 (294)
Q Consensus       221 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------~~~~~~~-~~~~~~~~v~~~~~s~~~~  275 (294)
                      .|.|.-. .++++|+.|..|.+|...+-.                        +++--.+ ....|...|.+++||.-..
T Consensus       265 Rfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP  343 (370)
T KOG1007|consen  265 RFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP  343 (370)
T ss_pred             EecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence            9999876 689999999999999764321                        0010011 1346788999999998655


Q ss_pred             -EEEEeccCCcEEEEec
Q 022590          276 -TILSCCEDGAIWRWDA  291 (294)
Q Consensus       276 -~l~s~~~dg~i~vw~~  291 (294)
                       .+|+-+.||.+.|=++
T Consensus       344 WiFASLSYDGRviIs~V  360 (370)
T KOG1007|consen  344 WIFASLSYDGRVIISSV  360 (370)
T ss_pred             eeEEEeccCceEEeecC
Confidence             5567899999887554

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.92  E-value=4.6e-23  Score=160.58  Aligned_cols=281  Identities=17%  Similarity=0.229  Sum_probs=188.4

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      .+++.|..+|+|+.|-+..+-..++++|+.||.|.+|.+....  .+..+++|...+.|+.-.+   ........|+++.
T Consensus        48 t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~---~~~~~~~ad~~v~  124 (764)
T KOG1063|consen   48 TTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARS---SVMTCKAADGTVS  124 (764)
T ss_pred             EeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeee---eEEEeeccCceEE
Confidence            3678999999999998544433479999999999999998443  4455666666665554322   2333336889999


Q ss_pred             EEEcCCCce--E---------------------------------------------EEeeccCCCCCceeEEEEecCC-
Q 022590           80 LWNVQTGIC--I---------------------------------------------LIFAGAGGHRNEVLSVDFHPSD-  111 (294)
Q Consensus        80 vwd~~~~~~--~---------------------------------------------~~~~~~~~~~~~v~~l~~~~~~-  111 (294)
                      +||.+..+.  .                                             .......||.+.|.+|+|.... 
T Consensus       125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~  204 (764)
T KOG1063|consen  125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG  204 (764)
T ss_pred             EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence            998843330  0                                             0011123899999999998633 


Q ss_pred             -CceEEeeecCCcEEEEecccccccc--ccceeecCCCCC---CCCceeee---ceEEeecCCCceeeccee--cceEEE
Q 022590          112 -IYRIASCGMDNTVKIWSMKEFWTYV--EKSFTWTDLPSK---FPTKYVQF---PVFIASVHSNYVDCNRWL--GDFILS  180 (294)
Q Consensus       112 -~~~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~i~~~~~~--~~~l~~  180 (294)
                       ..+|++++.|..||+|.+.-.....  +.+......+..   ........   ....+.+|.+.|.++.|+  +..|++
T Consensus       205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS  284 (764)
T KOG1063|consen  205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS  284 (764)
T ss_pred             CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence             3588999999999999997644221  111111111110   00001110   012345899999999998  557999


Q ss_pred             eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccc
Q 022590          181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ  260 (294)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  260 (294)
                      ++.|.++.+|...+..-...  ....+....+........-|+|++  +.+++-+..|..++|..... ..........+
T Consensus       285 ASaDksmiiW~pd~~tGiWv--~~vRlGe~gg~a~GF~g~lw~~n~--~~ii~~g~~Gg~hlWkt~d~-~~w~~~~~iSG  359 (764)
T KOG1063|consen  285 ASADKSMIIWKPDENTGIWV--DVVRLGEVGGSAGGFWGGLWSPNS--NVIIAHGRTGGFHLWKTKDK-TFWTQEPVISG  359 (764)
T ss_pred             cccCcceEEEecCCccceEE--EEEEeecccccccceeeEEEcCCC--CEEEEecccCcEEEEeccCc-cceeecccccc
Confidence            99999999999875421100  001122222334567888999999  68889999999999993332 22344444559


Q ss_pred             cCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          261 SKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       261 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      |...|++++|+|.|.+|++.|.|.+-|++-
T Consensus       360 H~~~V~dv~W~psGeflLsvs~DQTTRlFa  389 (764)
T KOG1063|consen  360 HVDGVKDVDWDPSGEFLLSVSLDQTTRLFA  389 (764)
T ss_pred             ccccceeeeecCCCCEEEEeccccceeeec
Confidence            999999999999999999999999988874

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.1e-24  Score=178.18  Aligned_cols=210  Identities=16%  Similarity=0.271  Sum_probs=177.0

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      ..+.|.++|..+.|+  +...++||+|+.||.|.|||+.+.+....+.  ...+.|.+++|+......|++++.+|.+.|
T Consensus       111 ~~~~h~G~V~gLDfN--~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i  188 (1049)
T KOG0307|consen  111 TKSKHTGPVLGLDFN--PFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVI  188 (1049)
T ss_pred             hhcccCCceeeeecc--ccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCcee
Confidence            456899999999998  6555599999999999999998865554442  256789999999867789999999999999


Q ss_pred             EEcCCCceEEEeeccCCCC--CceeEEEEecCCCceEEeeecCC---cEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           81 WNVQTGICILIFAGAGGHR--NEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      ||++..+.+..+..   +.  ..+..++|+|+....+++++.|.   .|.+||+|.-                      .
T Consensus       189 WDlr~~~pii~ls~---~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----------------------s  243 (1049)
T KOG0307|consen  189 WDLRKKKPIIKLSD---TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----------------------S  243 (1049)
T ss_pred             ccccCCCccccccc---CCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----------------------C
Confidence            99998888777763   33  35789999997778888887654   5899999973                      4


Q ss_pred             eceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          156 FPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      .|+..+.+|...|.++.|+   ..++++++.|++|.+|+.++++         .+..++.....+..+.|+|... ..++
T Consensus       244 sP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE---------vl~~~p~~~nW~fdv~w~pr~P-~~~A  313 (1049)
T KOG0307|consen  244 SPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE---------VLGELPAQGNWCFDVQWCPRNP-SVMA  313 (1049)
T ss_pred             CchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce---------EeeecCCCCcceeeeeecCCCc-chhh
Confidence            5677778999999999997   5799999999999999999876         6778888788899999999886 5889


Q ss_pred             EEcCCCeEEEEeccCCC
Q 022590          233 IGNREGKIFVWELQSSP  249 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~  249 (294)
                      +.+-||.|.||.+....
T Consensus       314 ~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  314 AASFDGKISIYSLQGTD  330 (1049)
T ss_pred             hheeccceeeeeeecCC
Confidence            99999999999997754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=5.8e-22  Score=152.00  Aligned_cols=226  Identities=15%  Similarity=0.133  Sum_probs=155.9

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  103 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  103 (294)
                      ++++++.|+.|++||+.+++.+..+..+. .+.+++|+| ++..+ ++++.++.|++||..+++....+.   .+. .+.
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~-~~~   76 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGP-DPE   76 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEecc---CCC-Ccc
Confidence            78899999999999999999888887654 467899999 66655 677789999999999988877665   233 356


Q ss_pred             EEEEecCCCceE-EeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEE
Q 022590          104 SVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  180 (294)
Q Consensus       104 ~l~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  180 (294)
                      .++|+| +++.+ ++++.|+.+++||+++..                       .+..+. +...+.++.|+  ++++++
T Consensus        77 ~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~-----------------------~~~~~~-~~~~~~~~~~~~dg~~l~~  131 (300)
T TIGR03866        77 LFALHP-NGKILYIANEDDNLVTVIDIETRK-----------------------VLAEIP-VGVEPEGMAVSPDGKIVVN  131 (300)
T ss_pred             EEEECC-CCCEEEEEcCCCCeEEEEECCCCe-----------------------EEeEee-CCCCcceEEECCCCCEEEE
Confidence            789999 65555 555678999999998721                       122221 12234556665  778888


Q ss_pred             eeCCC-eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE-EEEcCCCeEEEEeccCCCceeeeeccc
Q 022590          181 KSVDN-EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA-AIGNREGKIFVWELQSSPPVLIARLSH  258 (294)
Q Consensus       181 ~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~  258 (294)
                      +..++ .+.+||.++.+         ....... ...+..++|+|++.  .+ +++..++.|++||+++.+.........
T Consensus       132 ~~~~~~~~~~~d~~~~~---------~~~~~~~-~~~~~~~~~s~dg~--~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~  199 (300)
T TIGR03866       132 TSETTNMAHFIDTKTYE---------IVDNVLV-DQRPRFAEFTADGK--ELWVSSEIGGTVSVIDVATRKVIKKITFEI  199 (300)
T ss_pred             EecCCCeEEEEeCCCCe---------EEEEEEc-CCCccEEEECCCCC--EEEEEcCCCCEEEEEEcCcceeeeeeeecc
Confidence            77765 56778987653         2222222 23456789999984  55 455579999999999876433222211


Q ss_pred             c-cc--CCCeEEEEEccCCCEEEE-eccCCcEEEEecCC
Q 022590          259 A-QS--KSPIRQTAMSYDGSTILS-CCEDGAIWRWDAIP  293 (294)
Q Consensus       259 ~-~~--~~~v~~~~~s~~~~~l~s-~~~dg~i~vw~~~~  293 (294)
                      . .+  ......++|+|++++++. .+.++.+.+||+++
T Consensus       200 ~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~  238 (300)
T TIGR03866       200 PGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT  238 (300)
T ss_pred             cccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence            0 01  122356889999998654 45567899999864

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.92  E-value=1.9e-23  Score=152.64  Aligned_cols=207  Identities=19%  Similarity=0.294  Sum_probs=161.7

Q ss_pred             ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc-------eEEEeeccCCCCCceeEEEEecCCCceEEeee
Q 022590           47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCG  119 (294)
Q Consensus        47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~  119 (294)
                      -.+.+|+++|..++|+|.+...+|+|+.|.+|.||.+..+.       .+..+.   +|...|--++|+|.-.+.|++++
T Consensus        75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~---gH~rrVg~V~wHPtA~NVLlsag  151 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY---GHQRRVGLVQWHPTAPNVLLSAG  151 (472)
T ss_pred             CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEe---ecceeEEEEeecccchhhHhhcc
Confidence            45678999999999999999999999999999999987553       344455   79999999999998889999999


Q ss_pred             cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCC
Q 022590          120 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ  197 (294)
Q Consensus       120 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~  197 (294)
                      .|.+|.+|++.++                       .....+. |++.|.+++|+  |.+|++.+.|..||+||.++++ 
T Consensus       152 ~Dn~v~iWnv~tg-----------------------eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~-  206 (472)
T KOG0303|consen  152 SDNTVSIWNVGTG-----------------------EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT-  206 (472)
T ss_pred             CCceEEEEeccCC-----------------------ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc-
Confidence            9999999999983                       3444445 99999999997  9999999999999999999876 


Q ss_pred             CCCCCCceeeeeeecCC-CCeeEEEEcccCCcceEEEEc---CCCeEEEEeccCCCc-eeeeeccccccCCCeEEEEEcc
Q 022590          198 SPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGN---REGKIFVWELQSSPP-VLIARLSHAQSKSPIRQTAMSY  272 (294)
Q Consensus       198 ~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~s~  272 (294)
                              .+.+-..|. .....+.|-.++  .++.+|.   .+..+-+||..+.+. .....+   ...+.|.---|.|
T Consensus       207 --------~v~e~~~heG~k~~Raifl~~g--~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el---DtSnGvl~PFyD~  273 (472)
T KOG0303|consen  207 --------VVSEGVAHEGAKPARAIFLASG--KIFTTGFSRMSERQIALWDPNNLEEPIALQEL---DTSNGVLLPFYDP  273 (472)
T ss_pred             --------EeeecccccCCCcceeEEeccC--ceeeeccccccccceeccCcccccCcceeEEe---ccCCceEEeeecC
Confidence                    444444444 234455677777  4555553   577899999887543 233333   3335576667788


Q ss_pred             CCCEEEE-eccCCcEEEEecCCC
Q 022590          273 DGSTILS-CCEDGAIWRWDAIPT  294 (294)
Q Consensus       273 ~~~~l~s-~~~dg~i~vw~~~~~  294 (294)
                      |.+.+.. |-.|+.|+-|.+..+
T Consensus       274 dt~ivYl~GKGD~~IRYyEit~d  296 (472)
T KOG0303|consen  274 DTSIVYLCGKGDSSIRYFEITNE  296 (472)
T ss_pred             CCCEEEEEecCCcceEEEEecCC
Confidence            8887765 558999999998753

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.92  E-value=2.2e-23  Score=146.50  Aligned_cols=216  Identities=19%  Similarity=0.266  Sum_probs=171.6

Q ss_pred             Cccc-ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc-cceec-----ccCcceEEEEeCC-CCCceEEEee
Q 022590            2 CYVD-QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFV-----GHGDSINEIRTQP-LKPSLVVSAS   73 (294)
Q Consensus         2 ~~~~-~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~-----~h~~~v~~~~~~~-~~~~~l~s~~   73 (294)
                      +.|+ ++-+.|.|+.|.  |++. .+++-. |..|.+|+++++.. +..+.     .|....++-+|+| .+++.+++ .
T Consensus       116 ~~Ldteavg~i~cvew~--Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t  190 (370)
T KOG1007|consen  116 ASLDTEAVGKINCVEWE--PNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-T  190 (370)
T ss_pred             hcCCHHHhCceeeEEEc--CCCC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-e
Confidence            4566 666799999998  7887 666655 78999999988765 33332     3567788999999 45666665 4


Q ss_pred             CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           74 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        74 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      .|+++..||+++.++...+..  .|...|..+.|+|+...+|++|+.||.|++||.|..                     
T Consensus       191 ~d~tl~~~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t---------------------  247 (370)
T KOG1007|consen  191 SDSTLQFWDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT---------------------  247 (370)
T ss_pred             CCCcEEEEEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC---------------------
Confidence            579999999999888777765  788999999999988899999999999999999983                     


Q ss_pred             eeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCC--------------------CCCceeeeee
Q 022590          154 VQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPG--------------------EGTADILQKY  210 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~--------------------~~~~~~~~~~  210 (294)
                       ..|+..+..|...|.++.|+   .+++++++.|..|.+|...+-.....                    .-....+..+
T Consensus       248 -k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty  326 (370)
T KOG1007|consen  248 -KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY  326 (370)
T ss_pred             -CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence             67888999999999999997   78999999999999997654321000                    0122345678


Q ss_pred             ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          211 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      ..|+..|++++|+.... -.+|+-+.||.+.|=.+..
T Consensus       327 dehEDSVY~~aWSsadP-WiFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  327 DEHEDSVYALAWSSADP-WIFASLSYDGRVIISSVPR  362 (370)
T ss_pred             cccccceEEEeeccCCC-eeEEEeccCceEEeecCCh
Confidence            88999999999998775 5778889999998866643

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.4e-22  Score=143.52  Aligned_cols=222  Identities=15%  Similarity=0.207  Sum_probs=163.1

Q ss_pred             cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC----ceEEEeeccCCCCCceeEEEEec-CCCceEEeeecCCcE
Q 022590           50 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG----ICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTV  124 (294)
Q Consensus        50 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~~~~~dg~i  124 (294)
                      .+|.+-|+++.|.+ .|+.+|+|+.|++|+|||.+..    .+....+   .|.+.|..+.|.+ .-|+.+|+++.|+++
T Consensus        10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr---ah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR---AHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEE---ecCCcEEEEEecCccccceEEEEecCCce
Confidence            46889999999999 9999999999999999996543    3444555   6999999999964 457899999999999


Q ss_pred             EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee----cceEEEeeCCCeEEEecCCCCCCCCC
Q 022590          125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPG  200 (294)
Q Consensus       125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~  200 (294)
                      .||.-......              .....-.....+......|+.+.|.    |-.+++++.||.+|||+.-..-... 
T Consensus        86 ~iWEE~~~~~~--------------~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs-  150 (361)
T KOG2445|consen   86 SIWEEQEKSEE--------------AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS-  150 (361)
T ss_pred             eeeeecccccc--------------cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc-
Confidence            99986421100              0001123455677788899999996    7789999999999999876543221 


Q ss_pred             CCCceeeeeee-------cCCCCeeEEEEcccCC-cceEEEEcCC-----CeEEEEeccCCCceeeeeccccccCCCeEE
Q 022590          201 EGTADILQKYP-------VPECDIWFIKFSCDFH-YNAAAIGNRE-----GKIFVWELQSSPPVLIARLSHAQSKSPIRQ  267 (294)
Q Consensus       201 ~~~~~~~~~~~-------~~~~~i~~~~~~~~~~-~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  267 (294)
                        ...+..++.       .+..+..++.|+|..- ..+|++|+.+     +.++||................+|..+|++
T Consensus       151 --~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~d  228 (361)
T KOG2445|consen  151 --QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRD  228 (361)
T ss_pred             --cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCccee
Confidence              111222222       3445677888887542 2577888766     579999887765444444444489999999


Q ss_pred             EEEccCC----CEEEEeccCCcEEEEecCC
Q 022590          268 TAMSYDG----STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       268 ~~~s~~~----~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++|.|+-    ..||+++.|| |+||+++.
T Consensus       229 i~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  229 ISWAPNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             eeeccccCCceeeEEEeecCc-EEEEEEee
Confidence            9999963    4799999999 99999873

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3.1e-23  Score=151.89  Aligned_cols=256  Identities=16%  Similarity=0.211  Sum_probs=184.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC------ccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN------EKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i   78 (294)
                      +|.+.|+++.|+  .+++ +|++|+.|..+++|+++.      .+++.... .|...|.|++|.. ...++++|+.+++|
T Consensus        54 ~H~GCiNAlqFS--~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   54 EHTGCINALQFS--HNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV  129 (609)
T ss_pred             hhccccceeeec--cCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence            899999999998  6787 999999999999999864      34444433 3568999999998 88999999999999


Q ss_pred             EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      ...|+++.+.+..+... ...+.|+.+..+| -.+.|++.+.++.|.+||.+......                    ..
T Consensus       130 I~HDiEt~qsi~V~~~~-~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~--------------------~~  187 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANEN-NNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPI--------------------SL  187 (609)
T ss_pred             Eeeecccceeeeeeccc-CcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCC--------------------ce
Confidence            99999999998887621 1234899999999 57889999999999999999832111                    12


Q ss_pred             EEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCC----------CC---------------------CCc
Q 022590          159 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSP----------GE---------------------GTA  204 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~----------~~---------------------~~~  204 (294)
                      ............+.|+   +.+|++.+..+.+.+||.+......          ..                     ...
T Consensus       188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~  267 (609)
T KOG4227|consen  188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKC  267 (609)
T ss_pred             eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCC
Confidence            2223344445556665   6789999999999999998754320          00                     000


Q ss_pred             eeeee--------eec---C-----CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc------------------
Q 022590          205 DILQK--------YPV---P-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP------------------  250 (294)
Q Consensus       205 ~~~~~--------~~~---~-----~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------  250 (294)
                      .++..        ++.   +     .+.+.+++|.-+.   -+++|+.+-.|++|.+.....                  
T Consensus       268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~---~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~  344 (609)
T KOG4227|consen  268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY---TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI  344 (609)
T ss_pred             CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce---eeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence            00100        110   0     1234455555553   489999999999999854210                  


Q ss_pred             eeeee-ccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          251 VLIAR-LSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       251 ~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      ..... ....+|..-++.+.|+|...+|++.+-.+.+++|.
T Consensus       345 ~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  345 FIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             eecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence            00001 11348889999999999999999999999999995

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=8.5e-23  Score=145.72  Aligned_cols=248  Identities=15%  Similarity=0.232  Sum_probs=175.6

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCcc------------ccceec-ccCcceEEEEeC-------CCCCceEEE
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK------------LHKSFV-GHGDSINEIRTQ-------PLKPSLVVS   71 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~-~h~~~v~~~~~~-------~~~~~~l~s   71 (294)
                      ..+.|+  |||. .|++-+.|..+.+|++...-            ....++ .....|...+|-       | +..++++
T Consensus        53 kgckWS--PDGS-ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP-~t~l~a~  128 (406)
T KOG2919|consen   53 KGCKWS--PDGS-CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP-STNLFAV  128 (406)
T ss_pred             ccceeC--CCCc-eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC-ccceeee
Confidence            456787  9999 99999999999999985311            011111 123567777775       4 6678999


Q ss_pred             eeCCCcEEEEEcCCCceEEEeeccCCCCC---ceeEEEEecCCCceEEeeecCCcEEEEecc-ccccccccceeecCCCC
Q 022590           72 ASKDESVRLWNVQTGICILIFAGAGGHRN---EVLSVDFHPSDIYRIASCGMDNTVKIWSMK-EFWTYVEKSFTWTDLPS  147 (294)
Q Consensus        72 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~  147 (294)
                      .+.+.-|++||.-+|+....+... .|..   ...+++|+| ++.+|++|. ...|++||+. .+........       
T Consensus       129 ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t-------  198 (406)
T KOG2919|consen  129 SSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT-------  198 (406)
T ss_pred             ccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhh-------
Confidence            999999999999999988777643 2433   356899999 888787665 6799999994 3321110000       


Q ss_pred             CCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590          148 KFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  224 (294)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (294)
                               ......+..+.|.+++|+   ...+++++....+-||.-....         ++..+..|.+.|+.+.|.+
T Consensus       199 ---------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~---------pl~llggh~gGvThL~~~e  260 (406)
T KOG2919|consen  199 ---------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR---------PLQLLGGHGGGVTHLQWCE  260 (406)
T ss_pred             ---------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC---------ceeeecccCCCeeeEEecc
Confidence                     000122346677888887   5689999999888888766443         5677778999999999999


Q ss_pred             cCCcceEEEEc-CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          225 DFHYNAAAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       225 ~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +|+  .|++|. .+-.|..||++...........+......-.-....|++++|++|+.||.|++||++.
T Consensus       261 dGn--~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  261 DGN--KLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             CcC--eecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            994  666665 4778999999987533322222333233333456679999999999999999999875

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=3e-24  Score=163.34  Aligned_cols=250  Identities=13%  Similarity=0.163  Sum_probs=171.6

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC--------ccccceecccCcceEEEEeCCCCCceEEEeeCCC
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE   76 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg   76 (294)
                      .-|.+.|.+++|.  |... .|++++.||.|.+|++..        -+++.+|.+|.++|.|++..+ ++..+++|+.||
T Consensus       291 ~s~~d~ir~l~~~--~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  291 RSHDDCIRALAFH--PSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDG  366 (577)
T ss_pred             ecchhhhhhhhcC--CCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCc
Confidence            3577788888885  4343 899999999999999932        256778999999999999999 999999999999


Q ss_pred             cEEEEEcCCCc----------eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCC
Q 022590           77 SVRLWNVQTGI----------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP  146 (294)
Q Consensus        77 ~i~vwd~~~~~----------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  146 (294)
                      +|+.|++....          ....+.   ||.+.|+.+++++ ....|++++.||+++.|+.......           
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~---Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~-----------  431 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLL---GHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPC-----------  431 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhcccee---ccccceeeeeecc-cccceeeecCCceEEeeccCCcCcc-----------
Confidence            99999664211          122333   8999999999998 7778999999999999998873210           


Q ss_pred             CCCCCceeeeceEEeecCCCceeecceec---ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc
Q 022590          147 SKFPTKYVQFPVFIASVHSNYVDCNRWLG---DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS  223 (294)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  223 (294)
                                 ......-.+.-..+.+-.   ...++...-+.-.++++............  ..........+..+...
T Consensus       432 -----------~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~--~~~~~~~~~~in~vVs~  498 (577)
T KOG0642|consen  432 -----------TFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS--ASPGPRRYPQINKVVSH  498 (577)
T ss_pred             -----------ccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeecccc--CCCcccccCccceEEec
Confidence                       000001111122222221   22222222233333333332211000000  00001112456677888


Q ss_pred             ccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          224 CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       224 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |..  .+.+++.+|+.|+++|..+++......    .|...++++++.|+|.+|++++.||.+++|.+.
T Consensus       499 ~~~--~~~~~~hed~~Ir~~dn~~~~~l~s~~----a~~~svtslai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  499 PTA--DITFTAHEDRSIRFFDNKTGKILHSMV----AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             CCC--CeeEecccCCceecccccccccchhee----eccceecceeecCCCceEEeecCCceeehhhcc
Confidence            887  589999999999999999987433332    677889999999999999999999999999874

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.92  E-value=7.3e-23  Score=146.05  Aligned_cols=241  Identities=17%  Similarity=0.289  Sum_probs=181.8

Q ss_pred             ccCceeEEEEEee-----cCCCceEEEEeecCCeEEEEEcCCccccceecc--cCcc---eEEEEeCCCCCceEEEeeCC
Q 022590            6 QKEESFYTVSWAC-----NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--HGDS---INEIRTQPLKPSLVVSASKD   75 (294)
Q Consensus         6 ~h~~~v~~~~~~~-----~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--h~~~---v~~~~~~~~~~~~l~s~~~d   75 (294)
                      +..+.|+..+|-.     .|+.. ++|+.+.+.-|++||..+|+....+.+  |.+.   -.+++|+| ++..|++|.. 
T Consensus       102 ~eg~tvydy~wYs~M~s~qP~t~-l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-DGeqlfaGyk-  178 (406)
T KOG2919|consen  102 QEGETVYDYCWYSRMKSDQPSTN-LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-DGEQLFAGYK-  178 (406)
T ss_pred             ccCCEEEEEEeeeccccCCCccc-eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecC-CCCeEeeccc-
Confidence            4456788888863     46666 999999999999999999998887764  4443   46899999 8888887655 


Q ss_pred             CcEEEEEc-CCCceEEEe----eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590           76 ESVRLWNV-QTGICILIF----AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  150 (294)
Q Consensus        76 g~i~vwd~-~~~~~~~~~----~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (294)
                      ..|+++|+ +.|.--...    ....+..+-|.+++|+|.+...++.|+....+-++.-..                   
T Consensus       179 rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~-------------------  239 (406)
T KOG2919|consen  179 RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG-------------------  239 (406)
T ss_pred             ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC-------------------
Confidence            78999999 444322111    112245778999999998888999999998888887776                   


Q ss_pred             CceeeeceEEeecCCCceeeccee--cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeeecCCC-CeeEEEEcccC
Q 022590          151 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSCDF  226 (294)
Q Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~  226 (294)
                          +.|+..+.+|.+.|+.+.|.  |+.|++|.. +..|..||+|....        ++..+..|.. .-..+-|.-+.
T Consensus       240 ----~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~--------pv~~L~rhv~~TNQRI~FDld~  307 (406)
T KOG2919|consen  240 ----RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD--------PVYALERHVGDTNQRILFDLDP  307 (406)
T ss_pred             ----CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc--------hhhhhhhhccCccceEEEecCC
Confidence                66888899999999999997  889998875 77899999997643        3333333322 33345666666


Q ss_pred             CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590          227 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED  283 (294)
Q Consensus       227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  283 (294)
                      ++++|++|+.+|.|++||++..-. ....+.  .+...++.++++|--.++|+++..
T Consensus       308 ~~~~LasG~tdG~V~vwdlk~~gn-~~sv~~--~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  308 KGEILASGDTDGSVRVWDLKDLGN-EVSVTG--NYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CCceeeccCCCccEEEEecCCCCC-cccccc--cccccccceecCcccceeeeccCc
Confidence            668999999999999999998322 122222  566789999999998888888654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.91  E-value=3.8e-22  Score=155.63  Aligned_cols=237  Identities=17%  Similarity=0.267  Sum_probs=172.0

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ...|+.++|.  |||..++++++  ..+.+||..+|..++++++|.+.|.+++|+. +|..+++|+.|..|.+|+..-..
T Consensus        12 ~hci~d~afk--PDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG   86 (1081)
T KOG1538|consen   12 EHCINDIAFK--PDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEG   86 (1081)
T ss_pred             ccchheeEEC--CCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccc
Confidence            3489999998  99984444443  4799999999999999999999999999999 99999999999999999875332


Q ss_pred             eEEEeeccCCCCCceeEEEEec--------------------------------------CCCceEEeeecCCcEEEEec
Q 022590           88 CILIFAGAGGHRNEVLSVDFHP--------------------------------------SDIYRIASCGMDNTVKIWSM  129 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~--------------------------------------~~~~~l~~~~~dg~i~~wd~  129 (294)
                       +..+.    |.+.|.|+.|+|                                      +++.+|+.|-.||+|.+-+-
T Consensus        87 -~LkYS----H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen   87 -ILKYS----HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK  161 (1081)
T ss_pred             -eeeec----cCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence             22333    666666666666                                      14555555555555555432


Q ss_pred             cccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-------cceEEEeeCCCeEEEecCCCCCCCCCCC
Q 022590          130 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------GDFILSKSVDNEIVLWEPKMKEQSPGEG  202 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~l~~~~~d~~i~iwd~~~~~~~~~~~  202 (294)
                      ...                     ....+..-.+...+|.+++|+       .+.+++.....++.+|.+...       
T Consensus       162 ~gE---------------------ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-------  213 (1081)
T KOG1538|consen  162 NGE---------------------EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-------  213 (1081)
T ss_pred             CCC---------------------cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-------
Confidence            210                     012233344577889999996       347888888888888887543       


Q ss_pred             CceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc
Q 022590          203 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                         .+.+-..-.-...++.+.++|  .+++.|+.|+.+.+|--+.-   ..-++.  .....|..++..|++++++.|+.
T Consensus       214 ---~Igk~r~L~FdP~CisYf~NG--Ey~LiGGsdk~L~~fTR~Gv---rLGTvg--~~D~WIWtV~~~PNsQ~v~~GCq  283 (1081)
T KOG1538|consen  214 ---QIGKDRALNFDPCCISYFTNG--EYILLGGSDKQLSLFTRDGV---RLGTVG--EQDSWIWTVQAKPNSQYVVVGCQ  283 (1081)
T ss_pred             ---eecccccCCCCchhheeccCC--cEEEEccCCCceEEEeecCe---EEeecc--ccceeEEEEEEccCCceEEEEEc
Confidence               222222223345578888888  68999999999999865442   333333  34568999999999999999999


Q ss_pred             CCcEEEEecC
Q 022590          283 DGAIWRWDAI  292 (294)
Q Consensus       283 dg~i~vw~~~  292 (294)
                      ||+|-.|++.
T Consensus       284 DGTiACyNl~  293 (1081)
T KOG1538|consen  284 DGTIACYNLI  293 (1081)
T ss_pred             cCeeehhhhH
Confidence            9999988863

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.91  E-value=3.4e-24  Score=170.34  Aligned_cols=255  Identities=17%  Similarity=0.369  Sum_probs=191.2

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      |-.|...|+|..|.  ..|. ++++|+.|..++||..++..+.....||.+.|+.++.+. +..++++++.|..|++|.+
T Consensus       186 LlgH~naVyca~fD--rtg~-~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFD--RTGR-YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHhhhhheeeeeec--cccc-eEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEec
Confidence            34799999999997  8898 999999999999999999999999999999999999998 7789999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc-cccccccceeecCCCCCCCCceeeece----
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPV----  158 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----  158 (294)
                      ..+.++..+.   +|++.|++|+|+|     ..+.+.||++++||.+- .....       +.|...........+    
T Consensus       262 ~~~~pvsvLr---ghtgavtaiafsP-----~~sss~dgt~~~wd~r~~~~~y~-------prp~~~~~~~~~~s~~~~~  326 (1113)
T KOG0644|consen  262 PDGAPVSVLR---GHTGAVTAIAFSP-----RASSSDDGTCRIWDARLEPRIYV-------PRPLKFTEKDLVDSILFEN  326 (1113)
T ss_pred             CCCchHHHHh---ccccceeeeccCc-----cccCCCCCceEeccccccccccC-------CCCCCcccccceeeeeccc
Confidence            9999998888   7999999999999     44888999999999992 11111       111111100000000    


Q ss_pred             ---------EEeecCCCceeeccee-------------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC
Q 022590          159 ---------FIASVHSNYVDCNRWL-------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD  216 (294)
Q Consensus       159 ---------~~~~~~~~~i~~~~~~-------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  216 (294)
                               .......-.+.+++|.             ..+.+++-.+-.+.+|++.++.         .......+...
T Consensus       327 ~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~---------l~H~l~ghsd~  397 (1113)
T KOG0644|consen  327 NGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ---------LLHNLMGHSDE  397 (1113)
T ss_pred             cccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch---------hhhhhcccccc
Confidence                     0000001112222222             1234444456678888888765         45566677888


Q ss_pred             eeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       217 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      +..+.++|-.. ....+++.||...|||+-.+.+......   + ...+...+||++|..++....-|.++|...
T Consensus       398 ~yvLd~Hpfn~-ri~msag~dgst~iwdi~eg~pik~y~~---g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  398 VYVLDVHPFNP-RIAMSAGYDGSTIIWDIWEGIPIKHYFI---G-HGKLVDGKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             eeeeeecCCCc-HhhhhccCCCceEeeecccCCcceeeec---c-cceeeccccCCCCceEecCCCCCceEEecc
Confidence            99999999876 6778889999999999999876655553   3 356788999999999998888888888754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.91  E-value=7.2e-23  Score=158.68  Aligned_cols=165  Identities=19%  Similarity=0.221  Sum_probs=130.5

Q ss_pred             CCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---c
Q 022590           99 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---G  175 (294)
Q Consensus        99 ~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~  175 (294)
                      ...|+.+.|.|.+...|++++.||.|++|.+..+...                .....|...+..|...|+++.|+   .
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~----------------e~~~tPe~~lt~h~eKI~slRfHPLAa  690 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP----------------ENEMTPEKILTIHGEKITSLRFHPLAA  690 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCC----------------cccCCcceeeecccceEEEEEecchhh
Confidence            3458999999999999999999999999999874321                11144667788999999999998   7


Q ss_pred             ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeee
Q 022590          176 DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR  255 (294)
Q Consensus       176 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  255 (294)
                      +.|++++.|-+|++||+++..         ....+.+|...|..++|+|+|  +.+++.+.||.|++|+.++.+... ..
T Consensus       691 dvLa~asyd~Ti~lWDl~~~~---------~~~~l~gHtdqIf~~AWSpdG--r~~AtVcKDg~~rVy~Prs~e~pv-~E  758 (1012)
T KOG1445|consen  691 DVLAVASYDSTIELWDLANAK---------LYSRLVGHTDQIFGIAWSPDG--RRIATVCKDGTLRVYEPRSREQPV-YE  758 (1012)
T ss_pred             hHhhhhhccceeeeeehhhhh---------hhheeccCcCceeEEEECCCC--cceeeeecCceEEEeCCCCCCCcc-cc
Confidence            899999999999999999765         567788999999999999999  689999999999999998875322 22


Q ss_pred             ccccccCCCeEEEEEccCCCEEEEeccCC----cEEEEecC
Q 022590          256 LSHAQSKSPIRQTAMSYDGSTILSCCEDG----AIWRWDAI  292 (294)
Q Consensus       256 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg----~i~vw~~~  292 (294)
                      -.. .-...--.+.|.-+|+++++.+.|.    .|.+||..
T Consensus       759 g~g-pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq  798 (1012)
T KOG1445|consen  759 GKG-PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ  798 (1012)
T ss_pred             CCC-CccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence            111 1112334577888999999887765    36666653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.2e-22  Score=149.86  Aligned_cols=240  Identities=13%  Similarity=0.173  Sum_probs=180.2

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC--ccccceecccCcceEEEEeCCCCCc-eEEEeeCCCcEEEEEcC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQ   84 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~vwd~~   84 (294)
                      .+.|+++.|.  |... +|++++.||+++||.++.  ...++.+.-...+|.+.+|.| ++. .+++++....+..||+.
T Consensus       213 ~~~I~sv~FH--p~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p-~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFH--PTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP-NGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEec--CCCc-eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC-CCceEEEecccceEEEEeecc
Confidence            4689999996  7776 999999999999998854  345566666678999999999 555 99999999999999998


Q ss_pred             CCceEEEeeccCCCC-CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           85 TGICILIFAGAGGHR-NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      +.+... +..+.++. ..+.....+| ++++|+..+..|.|.+....++.                       .+..+. 
T Consensus       289 ~ak~~k-~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~e-----------------------li~s~K-  342 (514)
T KOG2055|consen  289 TAKVTK-LKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKE-----------------------LITSFK-  342 (514)
T ss_pred             cccccc-ccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhh-----------------------hhheee-
Confidence            877544 33333454 3567788899 88899999999999999888732                       222222 


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC-CeeEEEEcccCCcceEEEEcCCCeE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-DIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      -++.|..+.|+  +..|++++.+|.|.+||++...         ++..+....+ .-++++.++++  .+||+|+..|.|
T Consensus       343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~---------~~~rf~D~G~v~gts~~~S~ng--~ylA~GS~~GiV  411 (514)
T KOG2055|consen  343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS---------CLHRFVDDGSVHGTSLCISLNG--SYLATGSDSGIV  411 (514)
T ss_pred             eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc---------eEEEEeecCccceeeeeecCCC--ceEEeccCcceE
Confidence            35677888886  7888888999999999999764         4555544322 23445666666  699999999999


Q ss_pred             EEEeccC----CCceeeeeccccccCCCeEEEEEccCCCEEEEecc--CCcEEEEe
Q 022590          241 FVWELQS----SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE--DGAIWRWD  290 (294)
Q Consensus       241 ~i~d~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~vw~  290 (294)
                      .|||.++    ..+.++..+.  .-...|++|+|+|+++.||.+|.  +..+++-.
T Consensus       412 NIYd~~s~~~s~~PkPik~~d--NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH  465 (514)
T KOG2055|consen  412 NIYDGNSCFASTNPKPIKTVD--NLTTAITSLQFNHDAQILAIASRVKKNALRLVH  465 (514)
T ss_pred             EEeccchhhccCCCCchhhhh--hhheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence            9999764    3344444444  44467999999999999998874  44566543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.2e-22  Score=141.77  Aligned_cols=255  Identities=15%  Similarity=0.173  Sum_probs=179.1

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|-.+|.+++|+  ++|+ .|++++.|..|.+||+..|.+++.+. ..++|+...|+|.+.+..++.-.+..-.+-++
T Consensus        61 lsaH~~pi~sl~WS--~dgr-~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~  136 (405)
T KOG1273|consen   61 LSAHVRPITSLCWS--RDGR-KLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDF  136 (405)
T ss_pred             hhccccceeEEEec--CCCC-EeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEe
Confidence            45899999999998  9999 99999999999999999999988887 67999999999977777776666666666676


Q ss_pred             CCCceEEEeec-cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           84 QTGICILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        84 ~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      ..+.....-.. ...-.....+..|.+ .++++++|...|.+.++|..+.                       ..+..+.
T Consensus       137 s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~-----------------------e~vas~r  192 (405)
T KOG1273|consen  137 SDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETL-----------------------ECVASFR  192 (405)
T ss_pred             cCCceeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchh-----------------------eeeeeee
Confidence            54332211111 001112233446787 8999999999999999999983                       2233333


Q ss_pred             cCC-Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee--cCCCCeeEEEEcccCCcceEEEEc-C
Q 022590          163 VHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGN-R  236 (294)
Q Consensus       163 ~~~-~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~-~  236 (294)
                      ... ..|..+.++  |+.|+.-+.|+.||.|+++.-..........+.++++  .......+++|+.+|  .|+++|+ .
T Consensus       193 its~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg--eYv~a~s~~  270 (405)
T KOG1273|consen  193 ITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG--EYVCAGSAR  270 (405)
T ss_pred             echheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc--cEEEecccc
Confidence            333 566666665  9999999999999999987432211111111111111  123345678899988  4665554 4


Q ss_pred             CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ...++||.-..+.  .+..+. .........+.|+|-...+++- ..|.+++|...
T Consensus       271 aHaLYIWE~~~Gs--LVKILh-G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  271 AHALYIWEKSIGS--LVKILH-GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             ceeEEEEecCCcc--eeeeec-CCchhheeecccccceeeeeec-cCCceEEEEee
Confidence            5679999998886  333333 1223567889999999888888 78899999864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.7e-21  Score=133.88  Aligned_cols=239  Identities=15%  Similarity=0.127  Sum_probs=166.7

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----------cccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      .|.+-+|+  |.++ +|++|..+|.|.+..+.+.          .++-..++|.++|+.++|..   .+|++|+. |.|+
T Consensus        12 tvf~qa~s--p~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~   84 (325)
T KOG0649|consen   12 TVFAQAIS--PSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVY   84 (325)
T ss_pred             HHHHHhhC--Ccce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEE
Confidence            45666777  8888 9999999999999987531          23445589999999999984   57777775 9999


Q ss_pred             EEEcCCCce------EEEeeccCCCC-----CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590           80 LWNVQTGIC------ILIFAGAGGHR-----NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        80 vwd~~~~~~------~~~~~~~~~~~-----~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                      -|..+....      +.....+ .|.     ..|+++...|..+. ++.++.|+.++-||+++                 
T Consensus        85 gw~W~E~~es~~~K~lwe~~~P-~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~-----------------  145 (325)
T KOG0649|consen   85 GWEWNEEEESLATKRLWEVKIP-MQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLED-----------------  145 (325)
T ss_pred             EeeehhhhhhccchhhhhhcCc-cccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecC-----------------
Confidence            997754322      1111111 122     35899999995555 55555799999999999                 


Q ss_pred             CCCceeeeceEEeecCCCceeecce-e-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC-CCCeeEEEEccc
Q 022590          149 FPTKYVQFPVFIASVHSNYVDCNRW-L-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCD  225 (294)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~  225 (294)
                            ......+.+|.+.|.++.- + ...+++|+.||++|+||.++.+........+....+..+ ...|.+++.+  
T Consensus       146 ------G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--  217 (325)
T KOG0649|consen  146 ------GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--  217 (325)
T ss_pred             ------CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--
Confidence                  4556788999999999987 3 678999999999999999988743222111111111111 2234444443  


Q ss_pred             CCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          226 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       226 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .  .++++|+ ...+.+|.+++.++..+..++     .++..+.|..+  .++++++.+.|.-|.+.
T Consensus       218 e--dWlvCGg-Gp~lslwhLrsse~t~vfpip-----a~v~~v~F~~d--~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  218 E--DWLVCGG-GPKLSLWHLRSSESTCVFPIP-----ARVHLVDFVDD--CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             C--ceEEecC-CCceeEEeccCCCceEEEecc-----cceeEeeeecc--eEEEeccccceeeeeec
Confidence            3  4777776 456999999999877777665     45777888654  67777777777777653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.89  E-value=2e-19  Score=130.72  Aligned_cols=240  Identities=15%  Similarity=0.165  Sum_probs=176.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCC--cEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~i~vwd~   83 (294)
                      +....++.+.|+  .+.. .|..|+.|| .++|+.+..............|--+-|+.   .++|..+.+.  .+++.++
T Consensus         3 ~~~~ti~~~~~N--qd~~-~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~   75 (391)
T KOG2110|consen    3 GKKPTINFIGFN--QDST-LLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHF   75 (391)
T ss_pred             CCCcceeeeeec--ccee-EEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEc
Confidence            345567777775  7777 888899887 68888765444322232334566677765   5666655543  4999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      +.+..+..+.    ...+|.++.++.   +.|+++-.+ .|+|||++..+..                    ..+.....
T Consensus        76 Kk~~~ICe~~----fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklL--------------------hTI~t~~~  127 (391)
T KOG2110|consen   76 KKKTTICEIF----FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLL--------------------HTIETTPP  127 (391)
T ss_pred             ccCceEEEEe----cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceee--------------------hhhhccCC
Confidence            9988888877    778899999964   446665544 4999999984321                    11223334


Q ss_pred             CCCceeeccee--cceEEEe--eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590          164 HSNYVDCNRWL--GDFILSK--SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  239 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~  239 (294)
                      +...+.+++++  +.+++--  ...|.|.+||..+.+         ....+..|++.+.+++|+++|  .+||++++.|+
T Consensus       128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~---------~v~~I~aH~~~lAalafs~~G--~llATASeKGT  196 (391)
T KOG2110|consen  128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ---------PVNTINAHKGPLAALAFSPDG--TLLATASEKGT  196 (391)
T ss_pred             CccceEeeccCCCCceEEecCCCCCceEEEEEcccce---------eeeEEEecCCceeEEEECCCC--CEEEEeccCce
Confidence            55667777776  4466653  346899999998654         678888999999999999999  69999999997


Q ss_pred             -EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          240 -IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       240 -i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                       ||+|.+.+++.....+..  -....|.+++|+|++++|++.|..++|+||.++.
T Consensus       197 VIRVf~v~~G~kl~eFRRG--~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  197 VIRVFSVPEGQKLYEFRRG--TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEEEEcCCccEeeeeeCC--ceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence             789999998855444433  2246799999999999999999999999999864

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.89  E-value=2.4e-19  Score=144.34  Aligned_cols=244  Identities=30%  Similarity=0.517  Sum_probs=189.8

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-ccceecccCc-ceEEEEe-CCCCCc-eEEEeeC-CCcE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-LHKSFVGHGD-SINEIRT-QPLKPS-LVVSASK-DESV   78 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~h~~-~v~~~~~-~~~~~~-~l~s~~~-dg~i   78 (294)
                      +..|...+.++.+.  +.+. .++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .+ +.. .++..+. |+.+
T Consensus        61 ~~~~~~~i~~~~~~--~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~  136 (466)
T COG2319          61 LRGHEDSITSIAFS--PDGE-LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP-DGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeccceEEEEEEC--CCCc-EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECC-CcceEEeccCCCCccE
Confidence            34788899999997  7787 88888899999999998876 6666666443 7777777 77 554 5555444 9999


Q ss_pred             EEEEcCC-CceEEEeeccCCCCCceeEEEEecCCCceEEeeec-CCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           79 RLWNVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        79 ~vwd~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      .+|+... ......+.   .|...|..++|+| ++..+++++. |+.+++|++..                       ..
T Consensus       137 ~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------------------~~  189 (466)
T COG2319         137 KLWDLSTPGKLIRTLE---GHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRT-----------------------GK  189 (466)
T ss_pred             EEEEecCCCeEEEEEe---cCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCC-----------------------Cc
Confidence            9999987 66667676   6999999999999 7777888875 99999999997                       33


Q ss_pred             ceEEeecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeee-eeecCCCCeeEEEEcccCCcceEE
Q 022590          157 PVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQ-KYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      ....+..|...+.++.|.  +. .+++++.|+.|++||.+.+.         .+. .+..+.... ...|+|++  .+++
T Consensus       190 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~-~~~~~~~~--~~~~  257 (466)
T COG2319         190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK---------LLRSTLSGHSDSV-VSSFSPDG--SLLA  257 (466)
T ss_pred             eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc---------EEeeecCCCCcce-eEeECCCC--CEEE
Confidence            455666699999999997  44 45555899999999877443         333 455555543 33899998  5788


Q ss_pred             EEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          233 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +++.++.+++|++..... .....  ..|...+.++.|+|++..+++++.|+.+.+|++..
T Consensus       258 ~~~~d~~~~~~~~~~~~~-~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~  315 (466)
T COG2319         258 SGSSDGTIRLWDLRSSSS-LLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET  315 (466)
T ss_pred             EecCCCcEEEeeecCCCc-EEEEE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC
Confidence            999999999999998764 12222  36678999999999989999899998899998764

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=2.5e-21  Score=147.68  Aligned_cols=231  Identities=15%  Similarity=0.158  Sum_probs=166.8

Q ss_pred             ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC-CCceEEeeecCCc
Q 022590           45 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNT  123 (294)
Q Consensus        45 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~  123 (294)
                      +.+.+.+|++.|+++.|+. +|.+|++|+.|-.+.|||.-..+.+..+..  +|...|.+++|-|. +..++++|..|..
T Consensus        42 lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--gHtaNIFsvKFvP~tnnriv~sgAgDk~  118 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIST--GHTANIFSVKFVPYTNNRIVLSGAGDKL  118 (758)
T ss_pred             hhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeec--ccccceeEEeeeccCCCeEEEeccCcce
Confidence            4467889999999999999 999999999999999999998888888887  89999999999994 4577899999999


Q ss_pred             EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCC
Q 022590          124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPG  200 (294)
Q Consensus       124 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~  200 (294)
                      |+++|+...+....             ......+......|...|..++..   ++.+.+++.||+|+-||++....-..
T Consensus       119 i~lfdl~~~~~~~~-------------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGM-------------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             EEEEeccccccccc-------------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence            99999986321110             111134455667788888877764   57999999999999999998653222


Q ss_pred             CC-CceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce----------------eeeeccccccC-
Q 022590          201 EG-TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV----------------LIARLSHAQSK-  262 (294)
Q Consensus       201 ~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------~~~~~~~~~~~-  262 (294)
                      .. ....+..+...--...++.++|... .+|++|+.|-..++||.+...+.                .+..+. .+|. 
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~-p~hlk  263 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS-PGHLK  263 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec-Ccccc
Confidence            21 1112222222234567889999886 69999999999999995321100                111111 0111 


Q ss_pred             ----------CCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          263 ----------SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       263 ----------~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                                ..++-+.|+|+|.-|+..-....|+++|+..
T Consensus       264 n~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~  304 (758)
T KOG1310|consen  264 NSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNE  304 (758)
T ss_pred             CcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecC
Confidence                      1256788999997666654555799999853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=2.4e-20  Score=152.30  Aligned_cols=255  Identities=15%  Similarity=0.153  Sum_probs=178.0

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-----cccceec-------ccCcceEEEEeCCCCCceEEEeeCC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-----KLHKSFV-------GHGDSINEIRTQPLKPSLVVSASKD   75 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----~~~~~~~-------~h~~~v~~~~~~~~~~~~l~s~~~d   75 (294)
                      ...|+.+.+--..|.. ++++++.||.|+||+--..     +.+..+.       +..+.=.-+.|....+.++++| .-
T Consensus      1109 ~t~Vs~l~liNe~D~a-LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~ 1186 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDA-LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DV 1186 (1387)
T ss_pred             CCccceeeeecccchh-heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-Ce
Confidence            4578888887555555 9999999999999974322     2222221       1111124467877455555554 46


Q ss_pred             CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      ..|+|||.........+..  +....|+++.-+-..++++++|..||.+++||.|....                    .
T Consensus      1187 r~IRIWDa~~E~~~~diP~--~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~--------------------d 1244 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPY--GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP--------------------D 1244 (1387)
T ss_pred             eEEEEEecccceeEeeccc--CCCccceeecccccCCceEEEeecCCceEEeecccCCc--------------------c
Confidence            8999999988877776654  46667888877665689999999999999999997321                    2


Q ss_pred             eceEEeecCCCc--eeeccee--c-ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590          156 FPVFIASVHSNY--VDCNRWL--G-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA  230 (294)
Q Consensus       156 ~~~~~~~~~~~~--i~~~~~~--~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  230 (294)
                      ..+.....|...  |..+.+.  | ..|++|+.+|.|++||+|......   ......... -....+++..++..  ..
T Consensus      1245 s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~---~~~iv~~~~-yGs~lTal~VH~ha--pi 1318 (1387)
T KOG1517|consen 1245 SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET---FLTIVAHWE-YGSALTALTVHEHA--PI 1318 (1387)
T ss_pred             ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc---cceeeeccc-cCccceeeeeccCC--Ce
Confidence            345666777776  8877775  2 269999999999999999852110   111111111 12248889999888  68


Q ss_pred             EEEEcCCCeEEEEeccCCCceeeeecc--ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          231 AAIGNREGKIFVWELQSSPPVLIARLS--HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       231 l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +|+|+. +.|+||++...+........  .....+.+.+++|+|...+||+|+.|..|.||....
T Consensus      1319 iAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1319 IASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred             eeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence            999988 99999999876532222221  223446789999999999999999999999997654

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.5e-20  Score=135.21  Aligned_cols=194  Identities=19%  Similarity=0.216  Sum_probs=147.7

Q ss_pred             ceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC-CCceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590           67 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL  145 (294)
Q Consensus        67 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  145 (294)
                      ..+|++-..|.|++||..+++.+..|+   ++...++.+.|... .++.+.+|+.||+|++||+|....           
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk---~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-----------  106 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFK---GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-----------  106 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheec---CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-----------
Confidence            468888889999999999999999998   68888899999763 568899999999999999998542           


Q ss_pred             CCCCCCceeeeceEEeecCC-Cceeeccee--cceEEEeeC----CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCee
Q 022590          146 PSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW  218 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~  218 (294)
                                .+......++ .+..+++-+  ++.+++|..    +-.+.+||+|..++.       .-.-...|...|+
T Consensus       107 ----------~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-------l~~~~eSH~DDVT  169 (376)
T KOG1188|consen  107 ----------SARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-------LRQLNESHNDDVT  169 (376)
T ss_pred             ----------hhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch-------hhhhhhhccCcce
Confidence                      2233334444 455555553  566666653    567999999987641       2233456889999


Q ss_pred             EEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecCC
Q 022590          219 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       219 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+.|+|... ++|++|+.||.|.+||++.... .-..+.-..+...|..+.|..++ +.|.+-+..+...+|+++.
T Consensus       170 ~lrFHP~~p-nlLlSGSvDGLvnlfD~~~d~E-eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~  243 (376)
T KOG1188|consen  170 QLRFHPSDP-NLLLSGSVDGLVNLFDTKKDNE-EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELED  243 (376)
T ss_pred             eEEecCCCC-CeEEeecccceEEeeecCCCcc-hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccC
Confidence            999999986 8999999999999999987632 11122222555779999999877 4588888999999999864

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=2.4e-18  Score=138.58  Aligned_cols=244  Identities=27%  Similarity=0.461  Sum_probs=182.2

Q ss_pred             ceeEEEEEeecCCCceEEEE-eecCCeEEEEEcCC-ccccceecccCcceEEEEeCCCCCceEEEeeC-CCcEEEEEcCC
Q 022590            9 ESFYTVSWACNVDGIPFLVA-GGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLWNVQT   85 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~-~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~vwd~~~   85 (294)
                      ..+..+.+. .+++..+++. +..|+.+.+|+... ......+..|...|..++|+| ++..+++++. |+.+++|+...
T Consensus       110 ~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  187 (466)
T COG2319         110 SSVSKLALS-SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRT  187 (466)
T ss_pred             CceeeEEEE-CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCC
Confidence            367778876 6777634444 34499999999988 778888899999999999999 7778888885 99999999998


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCc-eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE-Eeec
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASV  163 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  163 (294)
                      +..+..+.   +|...|.+++|+| ++. .+++++.|+.+++||....                       .... .+..
T Consensus       188 ~~~~~~~~---~~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~-----------------------~~~~~~~~~  240 (466)
T COG2319         188 GKPLSTLA---GHTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTG-----------------------KLLRSTLSG  240 (466)
T ss_pred             CceEEeec---cCCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCC-----------------------cEEeeecCC
Confidence            88888877   5999999999998 665 5666699999999977741                       1222 4555


Q ss_pred             CCCce-eecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          164 HSNYV-DCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       164 ~~~~i-~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      |.... ......+..+++++.|+.+++|+.+....        .+.....|...+..+.|.|++  ..+++++.|+.+.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~d~~~~~  310 (466)
T COG2319         241 HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS--------LLRTLSGHSSSVLSVAFSPDG--KLLASGSSDGTVRL  310 (466)
T ss_pred             CCcceeEeECCCCCEEEEecCCCcEEEeeecCCCc--------EEEEEecCCccEEEEEECCCC--CEEEEeeCCCcEEE
Confidence            66553 32222366888999999999999987652        222235567889999999966  46666888899999


Q ss_pred             EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe-ccCCcEEEEecCC
Q 022590          243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRWDAIP  293 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vw~~~~  293 (294)
                      |+...........  ...|...+..+.|.+++..++.+ ..|+.+.+|++..
T Consensus       311 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  360 (466)
T COG2319         311 WDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT  360 (466)
T ss_pred             EEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence            9888775433333  22455579999994333556655 6889999998764

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.87  E-value=9.3e-20  Score=144.90  Aligned_cols=241  Identities=13%  Similarity=0.146  Sum_probs=163.6

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce--EEEee-ccCCCCCceeEEEEec
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC--ILIFA-GAGGHRNEVLSVDFHP  109 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~-~~~~~~~~v~~l~~~~  109 (294)
                      +.+.||++.........-.-..+|+++.|+|.+..+++.|..+|.|.+||++.+..  ...+. ....|..+++.+.|..
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            47999999876333333335689999999999999999999999999999987655  22111 1226899999999976


Q ss_pred             CCCc--eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCC
Q 022590          110 SDIY--RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVD  184 (294)
Q Consensus       110 ~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d  184 (294)
                       +..  -|++++.||.|..|+++......+......           .............++++.|.   .+.|++|+.+
T Consensus       302 -~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~-----------~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~  369 (555)
T KOG1587|consen  302 -NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES-----------KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEE  369 (555)
T ss_pred             -cCCCCceEEEecCCcEeeeeccccccchhhccccc-----------ccccccccccccceeeEeeccCCCceEEEEcCC
Confidence             443  489999999999999887433221111000           00000111223456677774   7789999999


Q ss_pred             CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc-CCCceeeeeccccccCC
Q 022590          185 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLSHAQSKS  263 (294)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~  263 (294)
                      |.|.-=+-....... .........+..|.++++.+.++|-.. ..+++++ |..++||... ...+.  ..+.  .+..
T Consensus       370 G~v~~~~r~g~~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl--~~~~--~~~~  442 (555)
T KOG1587|consen  370 GKVYKGCRKGYTPAP-EVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPL--LSLD--SSPD  442 (555)
T ss_pred             cEEEEEeccCCcccc-cccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcc--hhhh--hccc
Confidence            998773332222111 012233456677889999999999986 3444444 9999999988 44322  2222  4446


Q ss_pred             CeEEEEEccCC-CEEEEeccCCcEEEEecC
Q 022590          264 PIRQTAMSYDG-STILSCCEDGAIWRWDAI  292 (294)
Q Consensus       264 ~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~  292 (294)
                      .|++++|||.. ..++++..||.|.+||+.
T Consensus       443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             eeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            69999999976 467788899999999985

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=9.5e-21  Score=144.53  Aligned_cols=232  Identities=13%  Similarity=0.181  Sum_probs=159.7

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee-cccCcceEEEEeCCC-CCceEEEeeCCCcEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPL-KPSLVVSASKDESVRLW   81 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~vw   81 (294)
                      |.+|++.|+|++|+  .+|. +|++|+.|-.+.|||....+++..+ .+|...|.++.|-|. +..++++|..|..|+++
T Consensus        46 L~GH~GCVN~LeWn--~dG~-lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWN--ADGE-LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hccccceecceeec--CCCC-EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            56899999999998  8999 9999999999999999888877766 589999999999985 35688999999999999


Q ss_pred             EcCCC----------ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           82 NVQTG----------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        82 d~~~~----------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      |+...          +....+.   .|...|..|+..|.+++.+.+++.||+|+-+|++.........            
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~---cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~------------  187 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWS---CHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE------------  187 (758)
T ss_pred             ecccccccccccCccchhhhhh---hhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccc------------
Confidence            99742          2233333   6999999999999667999999999999999999832111000            


Q ss_pred             ceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCC-CC--------CCCceeeeeee-cC-----
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQS-PG--------EGTADILQKYP-VP-----  213 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~-~~--------~~~~~~~~~~~-~~-----  213 (294)
                       ............--...++..+   ..+|++|+.|-..++||.+..... ..        .....+++.+. .|     
T Consensus       188 -~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~  266 (758)
T KOG1310|consen  188 -DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQ  266 (758)
T ss_pred             -cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcc
Confidence             0000000111111233444444   679999999999999995533211 10        00011111111 11     


Q ss_pred             ------CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeec
Q 022590          214 ------ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL  256 (294)
Q Consensus       214 ------~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  256 (294)
                            ...++.+.|+|+|.  -|++.-..-.|+++|+...+......+
T Consensus       267 gn~~~~~~~~t~vtfnpNGt--ElLvs~~gEhVYlfdvn~~~~~~~y~~  313 (758)
T KOG1310|consen  267 GNLDRYITCCTYVTFNPNGT--ELLVSWGGEHVYLFDVNEDKSPTPYFL  313 (758)
T ss_pred             cccccceeeeEEEEECCCCc--EEEEeeCCeEEEEEeecCCCCceeecC
Confidence                  11256789999995  444444455799999988775444433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.9e-19  Score=142.48  Aligned_cols=273  Identities=16%  Similarity=0.195  Sum_probs=173.0

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC----ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      .|...+++.+++  |+++ ++|+|..||.|.+|.--.    ......+.-|..+|++++|++ +|.+|++|+.+|.+.+|
T Consensus       203 ~Htf~~t~~~~s--pn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  203 HHTFNITCVALS--PNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLW  278 (792)
T ss_pred             hhcccceeEEec--cccc-eEEEeccCCcEEEEeccccccccccceEEEecccccceeEEec-CCceEeecccceEEEEE
Confidence            566677888886  9999 999999999999997432    233456778999999999999 99999999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc-eeec-----CCCCCCCCceee
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS-FTWT-----DLPSKFPTKYVQ  155 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~  155 (294)
                      .+.+++ .+.+.   .-.++|..+.++| ++.+.+....|+.|.+....+........ +...     ..+........-
T Consensus       279 q~~T~~-kqfLP---RLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i  353 (792)
T KOG1963|consen  279 QLETGK-KQFLP---RLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI  353 (792)
T ss_pred             eecCCC-ccccc---ccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence            999998 33344   3778999999999 88888888899999998876532211110 0000     000000000000


Q ss_pred             ---eceEEeecCCC--------------------------------ceeeccee--cceEEEeeC--------CC--eEE
Q 022590          156 ---FPVFIASVHSN--------------------------------YVDCNRWL--GDFILSKSV--------DN--EIV  188 (294)
Q Consensus       156 ---~~~~~~~~~~~--------------------------------~i~~~~~~--~~~l~~~~~--------d~--~i~  188 (294)
                         .....+.+|++                                .++.+..+  |+++++.-.        ||  .++
T Consensus       354 dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK  433 (792)
T KOG1963|consen  354 DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK  433 (792)
T ss_pred             cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence               00011111111                                12222222  445554421        22  356


Q ss_pred             EecCCCCCCCCCCCCceeeeee-ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC------ceeeeecccccc
Q 022590          189 LWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP------PVLIARLSHAQS  261 (294)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~  261 (294)
                      +|-......     ...+.... ..|+......++.+..+....++++.||.+++|-+...+      ..........-|
T Consensus       434 FW~~n~~~k-----t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~  508 (792)
T KOG1963|consen  434 FWQYNPNSK-----TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH  508 (792)
T ss_pred             EEEEcCCcc-----eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence            665544332     22222222 234444555555555443588999999999999994432      122222222246


Q ss_pred             CCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ..++++++|+.||..|+ .+.|+.|.+||..+
T Consensus       509 k~~i~a~~fs~dGslla-~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  509 KTPITALCFSQDGSLLA-VSFDDTITIWDYDT  539 (792)
T ss_pred             cCcccchhhcCCCcEEE-EecCCEEEEecCCC
Confidence            78999999999996555 45788999999875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=2.6e-19  Score=146.45  Aligned_cols=247  Identities=16%  Similarity=0.189  Sum_probs=171.4

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc---CcceEEEEeCC-CCCceEEEeeCCCcEEEEEcCC--
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH---GDSINEIRTQP-LKPSLVVSASKDESVRLWNVQT--   85 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h---~~~v~~~~~~~-~~~~~l~s~~~dg~i~vwd~~~--   85 (294)
                      ..+.|.  |-.. .++++...-.|+|||.+.++....|..+   ...|+.+.+-. ++..++++|+.||.|+||+-..  
T Consensus      1068 k~~~~h--pf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1068 KTLKFH--PFEP-QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred             ceeeec--CCCc-eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence            344554  6555 7888887779999999999887777543   35688888754 3566899999999999997432  


Q ss_pred             ---CceEEEeeccCCC----CCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           86 ---GICILIFAGAGGH----RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        86 ---~~~~~~~~~~~~~----~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                         .+.+..+..+.++    .+.=.-+.|....|. |+++|.-..|+|||.......                      .
T Consensus      1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~-Ll~tGd~r~IRIWDa~~E~~~----------------------~ 1201 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGH-LLVTGDVRSIRIWDAHKEQVV----------------------A 1201 (1387)
T ss_pred             cCCceeEEeeccccccCccCCCCCeeeehhhhCCe-EEecCCeeEEEEEecccceeE----------------------e
Confidence               2333333322111    111144567764555 555555789999999873211                      1


Q ss_pred             EEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC--eeEEEEcccCCcceEEE
Q 022590          159 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD--IWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~~  233 (294)
                      ....+....+++++-+   |+.+++|..||.+++||.|....      ...+.....|...  |..+.+.+.|- ..|++
T Consensus      1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~------ds~v~~~R~h~~~~~Iv~~slq~~G~-~elvS 1274 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP------DSLVCVYREHNDVEPIVHLSLQRQGL-GELVS 1274 (1387)
T ss_pred             ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc------cccceeecccCCcccceeEEeecCCC-cceee
Confidence            1112234456666554   89999999999999999997653      2355666666655  99999999886 37999


Q ss_pred             EcCCCeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          234 GNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |+.+|.|++||++........... +..-.+..+++..+++...+|+|+. +.|+||++.
T Consensus      1275 gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1275 GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred             eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence            999999999999985322222222 1112235999999999999999998 999999985

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.86  E-value=2e-20  Score=142.41  Aligned_cols=204  Identities=15%  Similarity=0.232  Sum_probs=161.9

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  104 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  104 (294)
                      .++.++.||.+.+.+ ..++..+.+.+|.+++.+-.|+| +|.-|++++.||.|++|.- +|-....+.   ....+|+|
T Consensus        77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~---Q~~~~v~c  150 (737)
T KOG1524|consen   77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVV---QNEESIRC  150 (737)
T ss_pred             eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHh---hcCceeEE
Confidence            688889999999988 56788888999999999999999 9999999999999999985 555444444   36778999


Q ss_pred             EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee
Q 022590          105 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  182 (294)
Q Consensus       105 l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  182 (294)
                      ++|.|+.++.+++.+  +.+.+=.+..                       ...+.....|.+-|.++.|+  .+++++|+
T Consensus       151 ~~W~p~S~~vl~c~g--~h~~IKpL~~-----------------------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG  205 (737)
T KOG1524|consen  151 ARWAPNSNSIVFCQG--GHISIKPLAA-----------------------NSKIIRWRAHDGLVLSLSWSTQSNIIASGG  205 (737)
T ss_pred             EEECCCCCceEEecC--CeEEEeeccc-----------------------ccceeEEeccCcEEEEeecCccccceeecC
Confidence            999997777666655  4566555554                       44567889999999999998  88999999


Q ss_pred             CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccC
Q 022590          183 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK  262 (294)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  262 (294)
                      .|-..++||-...          .+..-..|+.+|++++|.|+.   .++.++. +.++              +. ....
T Consensus       206 ED~kfKvWD~~G~----------~Lf~S~~~ey~ITSva~npd~---~~~v~S~-nt~R--------------~~-~p~~  256 (737)
T KOG1524|consen  206 EDFRFKIWDAQGA----------NLFTSAAEEYAITSVAFNPEK---DYLLWSY-NTAR--------------FS-SPRV  256 (737)
T ss_pred             CceeEEeecccCc----------ccccCChhccceeeeeecccc---ceeeeee-eeee--------------ec-CCCc
Confidence            9999999998643          455566788899999999994   3444442 2333              11 1334


Q ss_pred             CCeEEEEEccCCCEEEEeccCCcEEE
Q 022590          263 SPIRQTAMSYDGSTILSCCEDGAIWR  288 (294)
Q Consensus       263 ~~v~~~~~s~~~~~l~s~~~dg~i~v  288 (294)
                      +.|..++||+||..++.|...|.+.+
T Consensus       257 GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  257 GSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             cceEEEEEcCCCceeeccccCceEEE
Confidence            67999999999999999999997654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=7.2e-20  Score=140.97  Aligned_cols=225  Identities=16%  Similarity=0.243  Sum_probs=160.7

Q ss_pred             ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590           47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  126 (294)
Q Consensus        47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~  126 (294)
                      ..+.+|++.|.+|...| .+..|++|+.||+|+||.+.+|.++..+.    ..+.|.|++|+|....-++++..+..+.+
T Consensus       394 lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~~~~i  468 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGECVLI  468 (733)
T ss_pred             eeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEecCceEE
Confidence            45689999999999999 99999999999999999999999999998    77899999999955444555555555666


Q ss_pred             Eeccccccccc----cceeecCCCCC----------CCCceeeeceEEeecCCCceeeccee--cceEEEeeCC---CeE
Q 022590          127 WSMKEFWTYVE----KSFTWTDLPSK----------FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEI  187 (294)
Q Consensus       127 wd~~~~~~~~~----~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i  187 (294)
                      .+..-+.....    ..+........          .........+.....|...|..+.|+  |+||++...+   ..|
T Consensus       469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V  548 (733)
T KOG0650|consen  469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV  548 (733)
T ss_pred             eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence            55543311111    00000000000          00111222355667799999999998  9999987664   468


Q ss_pred             EEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEE
Q 022590          188 VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ  267 (294)
Q Consensus       188 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  267 (294)
                      .|+++.....         ...+....+.+..+.|+|...  +|++++ ...|++||+...+  .+.++.  .....|..
T Consensus       549 liHQLSK~~s---------Q~PF~kskG~vq~v~FHPs~p--~lfVaT-q~~vRiYdL~kqe--lvKkL~--tg~kwiS~  612 (733)
T KOG0650|consen  549 LIHQLSKRKS---------QSPFRKSKGLVQRVKFHPSKP--YLFVAT-QRSVRIYDLSKQE--LVKKLL--TGSKWISS  612 (733)
T ss_pred             EEEecccccc---------cCchhhcCCceeEEEecCCCc--eEEEEe-ccceEEEehhHHH--HHHHHh--cCCeeeee
Confidence            9999876542         223334456788999999984  565554 4679999998854  333333  33467999


Q ss_pred             EEEccCCCEEEEeccCCcEEEEecC
Q 022590          268 TAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       268 ~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++.+|.|.-|+.|+.|+.+..+|+.
T Consensus       613 msihp~GDnli~gs~d~k~~WfDld  637 (733)
T KOG0650|consen  613 MSIHPNGDNLILGSYDKKMCWFDLD  637 (733)
T ss_pred             eeecCCCCeEEEecCCCeeEEEEcc
Confidence            9999999999999999999999985

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=6.6e-21  Score=143.11  Aligned_cols=260  Identities=14%  Similarity=0.170  Sum_probs=187.1

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee-cccCcceEEEEeCCCC-CceEEEeeCCCcEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLK-PSLVVSASKDESVRL   80 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~l~s~~~dg~i~v   80 (294)
                      .|+.|.+.|+.+.|.  ..|. .|++|+.|..|.+||...++....+ .+|...|..-.|.|+. ..-+++++.||.+++
T Consensus       137 kL~~H~GcVntV~FN--~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFN--QRGD-VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             cccCCCCccceeeec--ccCc-eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            467999999999998  8898 9999999999999999988877666 4799999999998863 457899999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      =.+.........+....|.++|..++.-|....-|.+++.|+.+.-+|++........                    ..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~--------------------~c  273 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF--------------------VC  273 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee--------------------ee
Confidence            8776544444333344699999999999988899999999999999999984321111                    11


Q ss_pred             eecCCC---ceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCC------c------------------------
Q 022590          161 ASVHSN---YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGT------A------------------------  204 (294)
Q Consensus       161 ~~~~~~---~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~------------------------  204 (294)
                      ...+..   ....++.+   .+.+++++.|..+++||.+.-........      .                        
T Consensus       274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa  353 (559)
T KOG1334|consen  274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA  353 (559)
T ss_pred             eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee
Confidence            112222   23333333   56899999999999999886533211000      0                        


Q ss_pred             ---------------------------eeeee-eecCC--CCeeEEEE-cccCCcceEEEEcCCCeEEEEeccCCCceee
Q 022590          205 ---------------------------DILQK-YPVPE--CDIWFIKF-SCDFHYNAAAIGNREGKIFVWELQSSPPVLI  253 (294)
Q Consensus       205 ---------------------------~~~~~-~~~~~--~~i~~~~~-~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  253 (294)
                                                 ..... +++|.  ..|..+.| -|..  .|+++|+.-|.|.||+-.+++.+. 
T Consensus       354 SYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs--EyVvSGSDCGhIFiW~K~t~eii~-  430 (559)
T KOG1334|consen  354 SYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS--EYVVSGSDCGHIFIWDKKTGEIIR-  430 (559)
T ss_pred             eecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc--ceEEecCccceEEEEecchhHHHH-
Confidence                                       00000 12221  11222222 2333  689999999999999998886433 


Q ss_pred             eeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          254 ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       254 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                       .+.  +...-|+|+.=+|--..||+++-|..|+||--
T Consensus       431 -~Me--gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  431 -FME--GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             -Hhh--cccceEeccCCCCCCchhhccCCccceeeecC
Confidence             333  33448999999999999999999999999965

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=8.1e-20  Score=134.84  Aligned_cols=207  Identities=19%  Similarity=0.201  Sum_probs=144.1

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI   91 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~   91 (294)
                      .+++|+  ++|. .+++|+.||.+|||+......+.....|.+.|.+|.|+| ++++|++-+.| ..+||+.+++..+..
T Consensus       148 k~vaf~--~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFN--GDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEc--CCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhh
Confidence            456665  8888 999999999999999988888888889999999999999 99999999999 899999999966655


Q ss_pred             eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeec
Q 022590           92 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  171 (294)
Q Consensus        92 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  171 (294)
                      ... ..-......+.|+. ++      .. -.+++......                                       
T Consensus       223 ~t~-~~k~~~~~~cRF~~-d~------~~-~~l~laa~~~~---------------------------------------  254 (398)
T KOG0771|consen  223 KTP-FSKDEMFSSCRFSV-DN------AQ-ETLRLAASQFP---------------------------------------  254 (398)
T ss_pred             cCC-cccchhhhhceecc-cC------CC-ceEEEEEecCC---------------------------------------
Confidence            442 12233345555554 32      00 12333322220                                       


Q ss_pred             ceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce
Q 022590          172 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  251 (294)
Q Consensus       172 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  251 (294)
                         +..+..    ..+.+|+-..--         ...+.......|.+++.+++|  .+++.|+.||.|.+++..+.+..
T Consensus       255 ---~~~v~~----~~~~~w~~~~~l---------~~~~~~~~~~siSsl~VS~dG--kf~AlGT~dGsVai~~~~~lq~~  316 (398)
T KOG0771|consen  255 ---GGGVRL----CDISLWSGSNFL---------RLRKKIKRFKSISSLAVSDDG--KFLALGTMDGSVAIYDAKSLQRL  316 (398)
T ss_pred             ---CCceeE----EEeeeecccccc---------chhhhhhccCcceeEEEcCCC--cEEEEeccCCcEEEEEeceeeee
Confidence               000000    112233321000         011111223468899999999  69999999999999999887533


Q ss_pred             eeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          252 LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ..   ....|...|+.+.|+|+.+++++.+.|..+.|..+.
T Consensus       317 ~~---vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  317 QY---VKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             Ee---ehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            32   233777899999999999999999999888877653

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.85  E-value=6.1e-19  Score=129.14  Aligned_cols=253  Identities=14%  Similarity=0.183  Sum_probs=184.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce------ecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS------FVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      +....|..++|...+..+ .+...+.+..+......+......      .....++|..++...   ..|++|-.+|.+.
T Consensus        53 ~~~~ris~l~~~~d~~te-vl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~  128 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETE-VLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQ  128 (412)
T ss_pred             chhhhhhhheeecCCcee-EeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEE
Confidence            456788999998555555 444444777777777766554433      344567788887764   4688889999999


Q ss_pred             EEEcCCCc----eEEEeeccCCCCCceeEEEEecCCCceEEeeecC--CcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           80 LWNVQTGI----CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD--NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        80 vwd~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      +|....+.    .+..+.    ....+..+.-++....++++|+..  ..+.+||+.+..+..+    -...+.  ....
T Consensus       129 ~~~~k~~d~hss~l~~la----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~----aKNvpn--D~L~  198 (412)
T KOG3881|consen  129 VRHDKSGDLHSSKLIKLA----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS----AKNVPN--DRLG  198 (412)
T ss_pred             EEeccCCccccccceeee----cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeee----ccCCCC--cccc
Confidence            99987443    233333    335678888888778888889999  8999999998422111    111110  0000


Q ss_pred             eeeceEEeecCCCceeeccee----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          154 VQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                      ..        -+-+++.+.|-    ...|++++.-+.+++||.+.+..        ++..+...+.++.++...|++  +
T Consensus       199 Lr--------VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--------PV~~fd~~E~~is~~~l~p~g--n  260 (412)
T KOG3881|consen  199 LR--------VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR--------PVAQFDFLENPISSTGLTPSG--N  260 (412)
T ss_pred             ce--------eeeeeccceecCCCCCceEEEEecceeEEEecCcccCc--------ceeEeccccCcceeeeecCCC--c
Confidence            01        12345566663    46899999999999999997654        677778888999999999999  6


Q ss_pred             eEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          230 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++++|...|.+..||++.++. ....+.  +..+.|+++..+|.+++||++|-|..|||+|+++
T Consensus       261 ~Iy~gn~~g~l~~FD~r~~kl-~g~~~k--g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  261 FIYTGNTKGQLAKFDLRGGKL-LGCGLK--GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             EEEEecccchhheecccCcee-eccccC--CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            899999999999999999852 222233  6678999999999999999999999999999986

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.84  E-value=9.6e-19  Score=124.98  Aligned_cols=236  Identities=11%  Similarity=0.159  Sum_probs=172.6

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc---ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      -.++|+|.+|+  +|+. .+|.+..+..|.||.....+   ..++++.|...|+.+.|+| ..+.|++|+.|..-.+|..
T Consensus         9 ~~~pitchAwn--~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    9 LLEPITCHAWN--SDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             ccCceeeeeec--CCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCcccccc
Confidence            35799999998  8888 89999999999999986654   6778899999999999999 8889999999999999998


Q ss_pred             CCC-c--eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           84 QTG-I--CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        84 ~~~-~--~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ..+ +  +...+.   .++..++++.|+| .++.|++|+.-..|.||-++....-                   -.....
T Consensus        85 ~~~~~WkptlvLl---RiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdW-------------------WVsKhi  141 (361)
T KOG1523|consen   85 PSGGTWKPTLVLL---RINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDW-------------------WVSKHI  141 (361)
T ss_pred             CCCCeeccceeEE---EeccceeeEeecC-cCceEEeccCccEEEEEEEecccce-------------------ehhhhh
Confidence            443 2  222233   4889999999999 8889999999999999988862211                   111223


Q ss_pred             eecCCCceeeccee--cceEEEeeCCCeEEEecCCCC-----CCCCC----CCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK-----EQSPG----EGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~-----~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                      ...+...|.+++|+  +-++++|+.|+..++|..--.     .....    .....++.++....+.+..+.|+|+|  .
T Consensus       142 kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG--~  219 (361)
T KOG1523|consen  142 KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG--N  219 (361)
T ss_pred             CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC--C
Confidence            34467788899997  557888999999999864221     11100    01112333444556789999999999  6


Q ss_pred             eEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590          230 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (294)
                      .|+-.+.|+.+.+-|.....+. .....  ...-|..++.|-.+.
T Consensus       220 ~lawv~Hds~v~~~da~~p~~~-v~~~~--~~~lP~ls~~~ise~  261 (361)
T KOG1523|consen  220 RLAWVGHDSTVSFVDAAGPSER-VQSVA--TAQLPLLSVSWISEN  261 (361)
T ss_pred             EeeEecCCCceEEeecCCCchh-ccchh--hccCCceeeEeecCC
Confidence            8998999999999998776421 11221  112567777776443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.83  E-value=2.5e-17  Score=127.62  Aligned_cols=252  Identities=12%  Similarity=0.084  Sum_probs=150.5

Q ss_pred             ceeEEEEEeecCCCceEEEEe-ecCCeEEEEEcCC-ccc--cceecccCcceEEEEeCCCCCceEEEee-CCCcEEEEEc
Q 022590            9 ESFYTVSWACNVDGIPFLVAG-GINGIIRVIDVSN-EKL--HKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNV   83 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~-~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~   83 (294)
                      +....++++  |+++ +|+++ ..++.|.+|+++. ++.  ..... .......++++| ++++|++++ .++.|.+|++
T Consensus        35 ~~~~~l~~s--pd~~-~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~  109 (330)
T PRK11028         35 GQVQPMVIS--PDKR-HLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPL  109 (330)
T ss_pred             CCCccEEEC--CCCC-EEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEE
Confidence            445566665  8998 66555 4588999999863 332  22222 234567899999 777777665 4899999999


Q ss_pred             CCCc-eEEEeeccCCCCCceeEEEEecCCCceE-EeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           84 QTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        84 ~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      .+.. ........ .+.....+++++| +++++ ++...++.|.+||+..........               .. ....
T Consensus       110 ~~~g~~~~~~~~~-~~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~---------------~~-~~~~  171 (330)
T PRK11028        110 DKDGIPVAPIQII-EGLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQE---------------PA-EVTT  171 (330)
T ss_pred             CCCCCCCCceeec-cCCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccC---------------CC-ceec
Confidence            6432 21111111 1334567889999 66555 555667999999997622110000               00 0000


Q ss_pred             ecCCCceeeccee--cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeeecC------CCCeeEEEEcccCCcceEE
Q 022590          162 SVHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVP------ECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~l~  232 (294)
                      . .......+.|+  +++++++.. ++.|.+||+.....     ....+..+...      ......+.++|++  ++++
T Consensus       172 ~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg--~~ly  243 (330)
T PRK11028        172 V-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-----EIECVQTLDMMPADFSDTRWAADIHITPDG--RHLY  243 (330)
T ss_pred             C-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-----CEEEEEEEecCCCcCCCCccceeEEECCCC--CEEE
Confidence            0 01223345554  678877765 89999999974311     11122222211      1123358899998  4666


Q ss_pred             EEc-CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc-CCcEEEEecC
Q 022590          233 IGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAI  292 (294)
Q Consensus       233 ~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~  292 (294)
                      ++. .++.|.+|++......... .....-......++++|+|++|++++. ++.|.+|+++
T Consensus       244 v~~~~~~~I~v~~i~~~~~~~~~-~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        244 ACDRTASLISVFSVSEDGSVLSF-EGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EecCCCCeEEEEEEeCCCCeEEE-eEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            664 5789999999764321111 111011134567999999999998765 8899999875

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=5.9e-18  Score=135.81  Aligned_cols=256  Identities=18%  Similarity=0.260  Sum_probs=170.3

Q ss_pred             ecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCC--ceEEEeeCCCcEEEEEcCCCceEEEeecc
Q 022590           18 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP--SLVVSASKDESVRLWNVQTGICILIFAGA   95 (294)
Q Consensus        18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~   95 (294)
                      +++|++ +++... +..|.||...++.++..+.+|..+++.+.+.|...  .++++++.||.|++||...+..++.+.  
T Consensus        24 fSnD~k-~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~--   99 (792)
T KOG1963|consen   24 FSNDAK-FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD--   99 (792)
T ss_pred             cccCCc-EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe--
Confidence            458998 444444 45899999999999999999999999999988544  477899999999999999999888876  


Q ss_pred             CCCCCceeEEEEecC-------------CCceEEeeec--CCcEEEEecccccccccc---------ceeecCCCCCC--
Q 022590           96 GGHRNEVLSVDFHPS-------------DIYRIASCGM--DNTVKIWSMKEFWTYVEK---------SFTWTDLPSKF--  149 (294)
Q Consensus        96 ~~~~~~v~~l~~~~~-------------~~~~l~~~~~--dg~i~~wd~~~~~~~~~~---------~~~~~~~~~~~--  149 (294)
                        -..++..+.+.|.             +...+.+.+.  -++++-+.+.+.......         .+.........  
T Consensus       100 --~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i  177 (792)
T KOG1963|consen  100 --NNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI  177 (792)
T ss_pred             --cCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence              3333444333220             1111111111  122222222221111000         00000000000  


Q ss_pred             -----------CCc-eeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC
Q 022590          150 -----------PTK-YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC  215 (294)
Q Consensus       150 -----------~~~-~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  215 (294)
                                 ... ...........|.-.+++.+++  +++++++..||+|.+|.--..+.     .......+..|..
T Consensus       178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-----~~~t~t~lHWH~~  252 (792)
T KOG1963|consen  178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-----DSETCTLLHWHHD  252 (792)
T ss_pred             EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-----ccccceEEEeccc
Confidence                       000 0001111122355556666665  89999999999999996543111     2234567788889


Q ss_pred             CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          216 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      .|.+++|+++|  .+|++|+.+|.+.+|.+.++++....++.     ++|..+.+|||+.+.+...+|+.|.+-..
T Consensus       253 ~V~~L~fS~~G--~~LlSGG~E~VLv~Wq~~T~~kqfLPRLg-----s~I~~i~vS~ds~~~sl~~~DNqI~li~~  321 (792)
T KOG1963|consen  253 EVNSLSFSSDG--AYLLSGGREGVLVLWQLETGKKQFLPRLG-----SPILHIVVSPDSDLYSLVLEDNQIHLIKA  321 (792)
T ss_pred             ccceeEEecCC--ceEeecccceEEEEEeecCCCcccccccC-----CeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence            99999999999  69999999999999999999866655554     78999999999999999999999988765

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1e-17  Score=115.50  Aligned_cols=242  Identities=17%  Similarity=0.246  Sum_probs=160.2

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc------ccee--cccC-----cceEEEEeCCCCCceEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL------HKSF--VGHG-----DSINEIRTQPLKPSLVV   70 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~~~~--~~h~-----~~v~~~~~~~~~~~~l~   70 (294)
                      ...|+++|+.++|.   |.  +|++++ ||.|+=|...+...      ....  .-|.     -.|++|...|.. +-++
T Consensus        58 eqahdgpiy~~~f~---d~--~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~  130 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFH---DD--FLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSIL  130 (325)
T ss_pred             ccccCCCeeeeeee---hh--heeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEE
Confidence            35899999999995   33  566665 59999998754322      1111  1122     368999999944 4455


Q ss_pred             EeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590           71 SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  150 (294)
Q Consensus        71 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (294)
                      .++.|+.+.-||+++|+..+.++   +|++.|.++.--. ....+++|+.||++|+||.++.+........         
T Consensus       131 ~AgGD~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y---------  197 (325)
T KOG0649|consen  131 FAGGDGVIYQVDLEDGRIQREYR---GHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPY---------  197 (325)
T ss_pred             EecCCeEEEEEEecCCEEEEEEc---CCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccc---------
Confidence            55589999999999999999999   7999999999855 5556999999999999999984332111100         


Q ss_pred             CceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590          151 TKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA  230 (294)
Q Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  230 (294)
                          ..+......-...|-+++-+.+++++|+ ...+.+|.++..+         ....++.+ .++..+.|..+    .
T Consensus       198 ----k~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse---------~t~vfpip-a~v~~v~F~~d----~  258 (325)
T KOG0649|consen  198 ----KNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSE---------STCVFPIP-ARVHLVDFVDD----C  258 (325)
T ss_pred             ----cChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCC---------ceEEEecc-cceeEeeeecc----e
Confidence                0011111122356778888888988865 4679999999765         34444443 44666777765    4


Q ss_pred             EEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEE
Q 022590          231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRW  289 (294)
Q Consensus       231 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw  289 (294)
                      +++++..+.+.-|.+...   .....+  .......+..|+... ++|-.++....+.|+
T Consensus       259 vl~~G~g~~v~~~~l~Gv---l~a~ip--~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  259 VLIGGEGNHVQSYTLNGV---LQANIP--VESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             EEEeccccceeeeeeccE---EEEecc--CCccceeeecccCCceEEEEecccceeeeee
Confidence            777888889999988653   222222  111234444444332 455556677777765

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=5.9e-17  Score=115.90  Aligned_cols=238  Identities=13%  Similarity=0.145  Sum_probs=162.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCc--ceEEEEeCCCCCceEE-EeeCC------CcEEE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD--SINEIRTQPLKPSLVV-SASKD------ESVRL   80 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~-s~~~d------g~i~v   80 (294)
                      ....++|+  .|.. .+++|..+| .+||+.+--+....-+.+.+  .+.-+-|-.   ++|+ .|+.+      ..|.|
T Consensus         7 ~~lsvs~N--QD~S-cFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviI   79 (346)
T KOG2111|consen    7 KTLSVSFN--QDHS-CFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVII   79 (346)
T ss_pred             ceeEEEEc--cCCc-eEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEE
Confidence            44557776  7776 788887765 89999876443333222222  223333322   3333 33332      46999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ||=...+++..+.    ...+|.++.+.+ +  .+++.- .+.|.||........                    .....
T Consensus        80 WDD~k~~~i~el~----f~~~I~~V~l~r-~--riVvvl-~~~I~VytF~~n~k~--------------------l~~~e  131 (346)
T KOG2111|consen   80 WDDLKERCIIELS----FNSEIKAVKLRR-D--RIVVVL-ENKIYVYTFPDNPKL--------------------LHVIE  131 (346)
T ss_pred             EecccCcEEEEEE----eccceeeEEEcC-C--eEEEEe-cCeEEEEEcCCChhh--------------------eeeee
Confidence            9977788888887    888999999976 3  355444 679999998852111                    01111


Q ss_pred             eecCCCceeeccee--cceEEE-eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          161 ASVHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      ....+..+.+++..  ..+|+. |-.-|.|++-|+...+..       ....++.|...|.+++++.+|  ..+|+++..
T Consensus       132 t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-------~p~~I~AH~s~Iacv~Ln~~G--t~vATaStk  202 (346)
T KOG2111|consen  132 TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-------APSIINAHDSDIACVALNLQG--TLVATASTK  202 (346)
T ss_pred             cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC-------CceEEEcccCceeEEEEcCCc--cEEEEeccC
Confidence            12223334444443  334443 334689999999876421       245678899999999999999  699999999


Q ss_pred             Ce-EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          238 GK-IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       238 g~-i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |+ |||||..+++.+...+-  ......|.+++|||++.+||++|+.|+++|+.++.
T Consensus       203 GTLIRIFdt~~g~~l~E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  203 GTLIRIFDTEDGTLLQELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             cEEEEEEEcCCCcEeeeeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            97 89999999985554443  35557899999999999999999999999999875

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.82  E-value=1.3e-17  Score=138.49  Aligned_cols=258  Identities=10%  Similarity=0.159  Sum_probs=170.6

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-------cccceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKD   75 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   75 (294)
                      .|.+|+..|..++.+ ++++. ++++|+.||+|++|+....       +...++..-..++.++...+ +++.+|.++.|
T Consensus      1043 hL~Ehs~~v~k~a~s-~~~~s-~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVS-SEHTS-LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKD 1119 (1431)
T ss_pred             hhhhccccccceeec-CCCCc-eEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCC
Confidence            466899999988887 34556 9999999999999998542       12233333567889999998 88899999999


Q ss_pred             CcEEEEEcCCC--ceEEE--eeccCCC-CCc-eeEEEEecCCCc-eEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590           76 ESVRLWNVQTG--ICILI--FAGAGGH-RNE-VLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        76 g~i~vwd~~~~--~~~~~--~~~~~~~-~~~-v~~l~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                      |.|++.+++..  +....  ......+ .+. |..-+|...... .++.+...+.|..||++.......           
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~----------- 1188 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR----------- 1188 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh-----------
Confidence            99999998762  11110  1111112 223 333444443444 788888999999999998332111           


Q ss_pred             CCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-CCCCeeEEEEccc
Q 022590          149 FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCD  225 (294)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~  225 (294)
                                .......+.|++++.+  +++++.|+..|.+.+||+|=+.         ++..+.. +..++..+..+|-
T Consensus      1189 ----------lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~---------~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1189 ----------LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV---------PILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred             ----------hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc---------eeecccCcccCCcceEEeecc
Confidence                      1122234677877776  8899999999999999999554         3333322 3366777777765


Q ss_pred             CC--cceEEEEc-CCCeEEEEeccCCCceeeeecc-----------cc----ccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590          226 FH--YNAAAIGN-REGKIFVWELQSSPPVLIARLS-----------HA----QSKSPIRQTAMSYDGSTILSCCEDGAIW  287 (294)
Q Consensus       226 ~~--~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-----------~~----~~~~~v~~~~~s~~~~~l~s~~~dg~i~  287 (294)
                      ..  ...+.++. ..+.|.+|++.++.........           ..    .+.-.....++..-+.++.+|+.|..|+
T Consensus      1250 ~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1250 YPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred             CCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcccee
Confidence            43  23444555 6889999999887543332221           00    1112233344445567899999999999


Q ss_pred             EEecCC
Q 022590          288 RWDAIP  293 (294)
Q Consensus       288 vw~~~~  293 (294)
                      .||...
T Consensus      1330 ~wD~~~ 1335 (1431)
T KOG1240|consen 1330 KWDPTR 1335 (1431)
T ss_pred             eccCCC
Confidence            999864

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.82  E-value=1.9e-18  Score=127.13  Aligned_cols=228  Identities=21%  Similarity=0.252  Sum_probs=160.8

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC--------C--------ccccceecccCcceEEEEeCCCCC
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--------N--------EKLHKSFVGHGDSINEIRTQPLKP   66 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~   66 (294)
                      .|-.|...|+++.|+  |+|+ +||+|+.+|.|.+|...        +        ....+.+.+|.+.|..++|+| ++
T Consensus        60 ~Ls~H~~aVN~vRf~--p~ge-lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~  135 (434)
T KOG1009|consen   60 SLSRHTRAVNVVRFS--PDGE-LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DS  135 (434)
T ss_pred             cccCCcceeEEEEEc--CCcC-eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CC
Confidence            356899999999998  9999 99999999999999865        2        123356678999999999999 99


Q ss_pred             ceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc-------
Q 022590           67 SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS-------  139 (294)
Q Consensus        67 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------  139 (294)
                      .++++++.|.++++||+..|+....+.   +|...+..++|.| -++++++-+.|...+.+.+..........       
T Consensus       136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~  211 (434)
T KOG1009|consen  136 NFLVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAK  211 (434)
T ss_pred             ceeeeeeccceEEEEEeccceeEeecc---ccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeec
Confidence            999999999999999999999988887   7999999999999 88889988888877776665421111000       


Q ss_pred             ------------------------eeecCC------CC---------------CCCCceeeeceEEeecCCCceeeccee
Q 022590          140 ------------------------FTWTDL------PS---------------KFPTKYVQFPVFIASVHSNYVDCNRWL  174 (294)
Q Consensus       140 ------------------------~~~~~~------~~---------------~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (294)
                                              ..+.+.      |.               .+.......|...+.....+...+.|+
T Consensus       212 ~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~  291 (434)
T KOG1009|consen  212 AFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFS  291 (434)
T ss_pred             ccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEee
Confidence                                    000000      00               000111122333333333333333332


Q ss_pred             --------------------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          175 --------------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       175 --------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                                          +-.++.+ ....+.+||.++...        ....-..|-..++.++|+++|  .+++..
T Consensus       292 pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~~P--------~~~v~nihy~~iTDiaws~dg--~~l~vS  360 (434)
T KOG1009|consen  292 PVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTLEP--------LAVVDNIHYSAITDIAWSDDG--SVLLVS  360 (434)
T ss_pred             eeEEEeccccccccccccccceEEEEe-ecceEEEeccccccc--------eEEEeeeeeeeecceeecCCC--cEEEEe
Confidence                                1133443 456799999887542        333445566789999999999  689999


Q ss_pred             cCCCeEEEEeccCCC
Q 022590          235 NREGKIFVWELQSSP  249 (294)
Q Consensus       235 ~~dg~i~i~d~~~~~  249 (294)
                      +.||...+.-++..+
T Consensus       361 S~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  361 STDGFCSLVTFEPWE  375 (434)
T ss_pred             ccCCceEEEEEcchh
Confidence            999998888777654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=2.5e-16  Score=114.92  Aligned_cols=228  Identities=12%  Similarity=0.172  Sum_probs=166.3

Q ss_pred             EEEEeecC--CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCce
Q 022590           25 FLVAGGIN--GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV  102 (294)
Q Consensus        25 ~l~~~~~d--g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  102 (294)
                      ++|..+.+  ..+++++.+.+..+..+. ...+|.++.++.   +.|+++-.+. |.|||+++.+.+..+.....+...+
T Consensus        58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl  132 (391)
T KOG2110|consen   58 LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGL  132 (391)
T ss_pred             eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccce
Confidence            56555544  348888888877777766 567899999975   5666666644 9999999999999887654566677


Q ss_pred             eEEEEecCCCceEEee--ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceE
Q 022590          103 LSVDFHPSDIYRIASC--GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI  178 (294)
Q Consensus       103 ~~l~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  178 (294)
                      .++.+++ ++.+++-=  ...|.|.+||+.+                       ..++..+..|.+.+.+++|+  |.+|
T Consensus       133 ~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n-----------------------l~~v~~I~aH~~~lAalafs~~G~ll  188 (391)
T KOG2110|consen  133 CALSPNN-ANCYLAYPGSTTSGDVVLFDTIN-----------------------LQPVNTINAHKGPLAALAFSPDGTLL  188 (391)
T ss_pred             EeeccCC-CCceEEecCCCCCceEEEEEccc-----------------------ceeeeEEEecCCceeEEEECCCCCEE
Confidence            7887777 55566543  2468999999998                       66788899999999999997  9999


Q ss_pred             EEeeCCCe-EEEecCCCCCCCCCCCCceeeeeeec--CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceee--
Q 022590          179 LSKSVDNE-IVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI--  253 (294)
Q Consensus       179 ~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--  253 (294)
                      |+++..|+ ||++.+.+++.         +.++.-  ....|.+++|+|++  .+|++.+..++|++|.+........  
T Consensus       189 ATASeKGTVIRVf~v~~G~k---------l~eFRRG~~~~~IySL~Fs~ds--~~L~~sS~TeTVHiFKL~~~~~~~~~~  257 (391)
T KOG2110|consen  189 ATASEKGTVIRVFSVPEGQK---------LYEFRRGTYPVSIYSLSFSPDS--QFLAASSNTETVHIFKLEKVSNNPPES  257 (391)
T ss_pred             EEeccCceEEEEEEcCCccE---------eeeeeCCceeeEEEEEEECCCC--CeEEEecCCCeEEEEEecccccCCCCC
Confidence            99999997 79999988763         332221  13568999999999  5899999999999999865320000  


Q ss_pred             -----------------------------------eeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          254 -----------------------------------ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       254 -----------------------------------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                                                         .++...+ ...+..+.=.+..+++..++.||.++.|.+.+
T Consensus       258 p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~-~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  258 PTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESG-RKNICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             CCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCC-ccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence                                               0000000 01122222224678899999999999998865

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.81  E-value=5.3e-18  Score=121.27  Aligned_cols=215  Identities=14%  Similarity=0.118  Sum_probs=163.7

Q ss_pred             ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEe
Q 022590           49 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS  128 (294)
Q Consensus        49 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd  128 (294)
                      +....++|+|.+|++ +...+|.+.....|.||.....+.-.....+..|...|+.++|+| ..+.|++|+.|..-++|.
T Consensus         6 ~~~~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             eeeccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccc
Confidence            333467999999999 889999999999999999987764444444557999999999999 778899999999999999


Q ss_pred             ccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCcee
Q 022590          129 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI  206 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  206 (294)
                      ......                    -.|...+..++...+++.|+  ++.|++|+....|.+|=++..+.-...     
T Consensus        84 ~~~~~~--------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVs-----  138 (361)
T KOG1523|consen   84 QPSGGT--------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVS-----  138 (361)
T ss_pred             cCCCCe--------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehh-----
Confidence            854211                    45667778899999999997  889999999999999988765421110     


Q ss_pred             eeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC----Cc---eeeee-------ccccccCCCeEEEEEcc
Q 022590          207 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS----PP---VLIAR-------LSHAQSKSPIRQTAMSY  272 (294)
Q Consensus       207 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~---~~~~~-------~~~~~~~~~v~~~~~s~  272 (294)
                      ...-......|.++.|+|++  -+|++|+.|+..++|..-=.    ++   ..-.+       .+.....+.+..+.|+|
T Consensus       139 KhikkPirStv~sldWhpnn--VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~  216 (361)
T KOG1523|consen  139 KHIKKPIRSTVTSLDWHPNN--VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP  216 (361)
T ss_pred             hhhCCccccceeeeeccCCc--ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence            01112235678999999998  68999999999999975210    00   00000       11113457899999999


Q ss_pred             CCCEEEEeccCCcEEEEecC
Q 022590          273 DGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       273 ~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +|..|+-.+.|..+.+=|..
T Consensus       217 sG~~lawv~Hds~v~~~da~  236 (361)
T KOG1523|consen  217 SGNRLAWVGHDSTVSFVDAA  236 (361)
T ss_pred             CCCEeeEecCCCceEEeecC
Confidence            99999999999999887653

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.8e-18  Score=132.31  Aligned_cols=216  Identities=19%  Similarity=0.206  Sum_probs=147.9

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----------cccceecccCcceEEEEeCCCCCceEEE
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVS   71 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s   71 (294)
                      ..++.|+++|.|++..  +++. .+++|+.||+|+.|++...          .....+.||.+.|+.+++++ ....|++
T Consensus       338 ~tfraH~gPVl~v~v~--~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Lls  413 (577)
T KOG0642|consen  338 LTFRAHEGPVLCVVVP--SNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLS  413 (577)
T ss_pred             EEEecccCceEEEEec--CCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceee
Confidence            4678999999999997  7787 9999999999999976421          23456789999999999999 7788999


Q ss_pred             eeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           72 ASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        72 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      ++.||+++.|+...... ..|.....| +....+.+-.......++...-+.-.+++............  ...+     
T Consensus       414 cs~DgTvr~w~~~~~~~-~~f~~~~e~-g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s--~~~~-----  484 (577)
T KOG0642|consen  414 CSSDGTVRLWEPTEESP-CTFGEPKEH-GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFES--SASP-----  484 (577)
T ss_pred             ecCCceEEeeccCCcCc-cccCCcccc-CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccc--cCCC-----
Confidence            99999999999866655 444432223 34466666542323333333233333333332111000000  0000     


Q ss_pred             ceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                               .......+..+.++  ..+.+++..|+.|+++|..+++         ++.....|...++++++.|++  .
T Consensus       485 ---------~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~---------~l~s~~a~~~svtslai~~ng--~  544 (577)
T KOG0642|consen  485 ---------GPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK---------ILHSMVAHKDSVTSLAIDPNG--P  544 (577)
T ss_pred             ---------cccccCccceEEecCCCCeeEecccCCceecccccccc---------cchheeeccceecceeecCCC--c
Confidence                     00001112222222  6788999999999999999776         567777788889999999999  6


Q ss_pred             eEEEEcCCCeEEEEeccCCCc
Q 022590          230 AAAIGNREGKIFVWELQSSPP  250 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~  250 (294)
                      +|++|+.|+.+++|.+.....
T Consensus       545 ~l~s~s~d~sv~l~kld~k~~  565 (577)
T KOG0642|consen  545 YLMSGSHDGSVRLWKLDVKTC  565 (577)
T ss_pred             eEEeecCCceeehhhccchhe
Confidence            999999999999999977653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.80  E-value=2e-17  Score=129.72  Aligned_cols=206  Identities=16%  Similarity=0.218  Sum_probs=149.4

Q ss_pred             CCcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc--------c-------------------------
Q 022590            1 MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH--------K-------------------------   47 (294)
Q Consensus         1 ~~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--------~-------------------------   47 (294)
                      |..++.|++.|+|++|+  .||+ .+|+|+.|..|.+|+..-...+        +                         
T Consensus        46 lqtLKgHKDtVycVAys--~dGk-rFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~  122 (1081)
T KOG1538|consen   46 LQPLKGHKDTVYCVAYA--KDGK-RFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPE  122 (1081)
T ss_pred             ccccccccceEEEEEEc--cCCc-eeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChh
Confidence            35688999999999998  8999 9999999999999985421110        0                         


Q ss_pred             --eeccc--CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCC----ceEEeee
Q 022590           48 --SFVGH--GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI----YRIASCG  119 (294)
Q Consensus        48 --~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~----~~l~~~~  119 (294)
                        ....|  ...|.+++|.. +|++|+.|-.+|+|.+-+- +++....+..+.+..++|.+++|+|..+    ..+++..
T Consensus       123 qK~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D  200 (1081)
T KOG1538|consen  123 QKSVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD  200 (1081)
T ss_pred             hhhHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe
Confidence              00011  23567777777 8999999999999999865 6666666776778899999999999543    4566666


Q ss_pred             cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce--ecceEEEeeCCCeEEEecCCCCCC
Q 022590          120 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQ  197 (294)
Q Consensus       120 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~  197 (294)
                      ...++.++.+.......+.                        .-.-.-.|+++  +|.+++.|+.|+.+++|.-..-  
T Consensus       201 W~qTLSFy~LsG~~Igk~r------------------------~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv--  254 (1081)
T KOG1538|consen  201 WGQTLSFYQLSGKQIGKDR------------------------ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV--  254 (1081)
T ss_pred             ccceeEEEEecceeecccc------------------------cCCCCchhheeccCCcEEEEccCCCceEEEeecCe--
Confidence            6666776666642111111                        11112234554  4999999999999999975422  


Q ss_pred             CCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          198 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                              .+.+.......|+.+...|++  .+++.|+.||+|..|++-.
T Consensus       255 --------rLGTvg~~D~WIWtV~~~PNs--Q~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  255 --------RLGTVGEQDSWIWTVQAKPNS--QYVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             --------EEeeccccceeEEEEEEccCC--ceEEEEEccCeeehhhhHH
Confidence                    344444556789999999999  5899999999999998743

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.80  E-value=7e-20  Score=146.23  Aligned_cols=214  Identities=17%  Similarity=0.325  Sum_probs=155.1

Q ss_pred             cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc
Q 022590           44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT  123 (294)
Q Consensus        44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~  123 (294)
                      +.++.+.+|..+|.|..|.. .+.++++|+.|..++||.++++.++....   ||.+.|+.++.+. ++.++++++.|..
T Consensus       181 k~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~r---Ghs~ditdlavs~-~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCR---GHSGDITDLAVSS-NNTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCC---CCccccchhccch-hhhhhhhcccCce
Confidence            44566778999999999998 89999999999999999999999998888   8999999999997 8888999999999


Q ss_pred             EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCC-
Q 022590          124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEG-  202 (294)
Q Consensus       124 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-  202 (294)
                      |++|.+..                       ..++..+.+|.+.|++++|++..  +.+.||++++||.+-.-...... 
T Consensus       256 IrvWrl~~-----------------------~~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp  310 (1113)
T KOG0644|consen  256 IRVWRLPD-----------------------GAPVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRP  310 (1113)
T ss_pred             EEEEecCC-----------------------CchHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCC
Confidence            99999999                       77888999999999999998544  77899999999998211100000 


Q ss_pred             ----Cceeeeeee--------------------------cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCcee
Q 022590          203 ----TADILQKYP--------------------------VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  252 (294)
Q Consensus       203 ----~~~~~~~~~--------------------------~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  252 (294)
                          .........                          .+...+..+.++.+.+ .+.++.-.+-.+++|++.++..  
T Consensus       311 ~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~-~~~~~ar~~~~~~vwnl~~g~l--  387 (1113)
T KOG0644|consen  311 LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLS-SIVVTARNDHRLCVWNLYTGQL--  387 (1113)
T ss_pred             CCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccc-ccceeeeeeeEeeeeecccchh--
Confidence                000000000                          0000111111111111 2334444556677788777652  


Q ss_pred             eeeccccccCCCeEEEEEccCCCE-EEEeccCCcEEEEecC
Q 022590          253 IARLSHAQSKSPIRQTAMSYDGST-ILSCCEDGAIWRWDAI  292 (294)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~vw~~~  292 (294)
                      ...+.  +|...+..+.++|-... ..+++.||...|||+-
T Consensus       388 ~H~l~--ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~  426 (1113)
T KOG0644|consen  388 LHNLM--GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW  426 (1113)
T ss_pred             hhhhc--ccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence            22222  67788999999996554 4578999999999984

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=2.5e-18  Score=131.21  Aligned_cols=184  Identities=21%  Similarity=0.295  Sum_probs=145.1

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      ++.|.+.|.+-.|+  |||. -|++++.||.|++|. .+|.+..++-....+|.|++|.|+..+.+++.+  +.+.|=.+
T Consensus       100 v~AH~~A~~~gRW~--~dGt-gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL  173 (737)
T KOG1524|consen  100 ISAHAAAISSGRWS--PDGA-GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPL  173 (737)
T ss_pred             hhhhhhhhhhcccC--CCCc-eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeec
Confidence            45899999999998  9998 899999999999998 567776677777889999999996666666544  45666666


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .-...+...+   .|.+-|.++.|+| ..+++++|+.|-..++||-..                        .+++....
T Consensus       174 ~~n~k~i~Wk---AHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G------------------------~~Lf~S~~  225 (737)
T KOG1524|consen  174 AANSKIIRWR---AHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQG------------------------ANLFTSAA  225 (737)
T ss_pred             ccccceeEEe---ccCcEEEEeecCc-cccceeecCCceeEEeecccC------------------------cccccCCh
Confidence            6555566666   6999999999999 888999999999999999874                        45667788


Q ss_pred             CCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590          164 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       164 ~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~  243 (294)
                      |+-+|++++|+.+.++..+.-.++|+=.++                    .+.|..++||+||  ..+++|+..|.+.+=
T Consensus       226 ~ey~ITSva~npd~~~~v~S~nt~R~~~p~--------------------~GSifnlsWS~DG--TQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  226 EEYAITSVAFNPEKDYLLWSYNTARFSSPR--------------------VGSIFNLSWSADG--TQATCGTSTGQLIVA  283 (737)
T ss_pred             hccceeeeeeccccceeeeeeeeeeecCCC--------------------ccceEEEEEcCCC--ceeeccccCceEEEe
Confidence            999999999995544444444555532222                    3568889999999  578888888877653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.79  E-value=1.4e-15  Score=117.92  Aligned_cols=239  Identities=11%  Similarity=0.068  Sum_probs=143.1

Q ss_pred             EEEEeecCCeEEEEEcCC-cc--ccceecccCcceEEEEeCCCCCceEEEe-eCCCcEEEEEcCC-CceEEEeeccCCCC
Q 022590           25 FLVAGGINGIIRVIDVSN-EK--LHKSFVGHGDSINEIRTQPLKPSLVVSA-SKDESVRLWNVQT-GICILIFAGAGGHR   99 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~i~vwd~~~-~~~~~~~~~~~~~~   99 (294)
                      +.++...++.|++|++.+ ++  .++.+. +.+....++++| ++++|+++ ..++.|.+|++.. ++. ...... ...
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~sp-d~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~-~~~   79 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISP-DKRHLYVGVRPEFRVLSYRIADDGAL-TFAAES-PLP   79 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECC-CCCEEEEEECCCCcEEEEEECCCCce-EEeeee-cCC
Confidence            344556789999999964 33  344444 345678899999 77777655 4588999999963 332 211110 133


Q ss_pred             CceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cc
Q 022590          100 NEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD  176 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~  176 (294)
                      .....++|+| +++++++++ .++.|.+|++........                   ...... +......+.++  ++
T Consensus        80 ~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~-------------------~~~~~~-~~~~~~~~~~~p~g~  138 (330)
T PRK11028         80 GSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVA-------------------PIQIIE-GLEGCHSANIDPDNR  138 (330)
T ss_pred             CCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCC-------------------ceeecc-CCCcccEeEeCCCCC
Confidence            4567899999 666666655 588999999974211000                   011111 11223334444  66


Q ss_pred             eEE-EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-CCeEEEEeccCC--Ccee
Q 022590          177 FIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-EGKIFVWELQSS--PPVL  252 (294)
Q Consensus       177 ~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~--~~~~  252 (294)
                      +++ +...++.|.+||+.+....... . ....... .......+.|+|+++  ++++... ++.|.+|+++..  +...
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g~l~~~-~-~~~~~~~-~g~~p~~~~~~pdg~--~lyv~~~~~~~v~v~~~~~~~~~~~~  213 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDGHLVAQ-E-PAEVTTV-EGAGPRHMVFHPNQQ--YAYCVNELNSSVDVWQLKDPHGEIEC  213 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCCccccc-C-CCceecC-CCCCCceEEECCCCC--EEEEEecCCCEEEEEEEeCCCCCEEE
Confidence            665 4556799999999763211100 0 0001111 133466799999994  6666554 899999999742  3222


Q ss_pred             eeeccc-c---ccCCCeEEEEEccCCCEEEEecc-CCcEEEEecCC
Q 022590          253 IARLSH-A---QSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAIP  293 (294)
Q Consensus       253 ~~~~~~-~---~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~~  293 (294)
                      ...+.. .   .+......+.++|++++|+++.. ++.|.+|++++
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~  259 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE  259 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence            222221 0   11122346899999999998854 78899999853

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.78  E-value=1.2e-18  Score=130.42  Aligned_cols=226  Identities=17%  Similarity=0.229  Sum_probs=175.2

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI   91 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~   91 (294)
                      +.+.++  .+|+ +++.|+..|.|..+|..++++...+. -...|.++.|-. +.+++|++-. ..+.|||- .|..+..
T Consensus       133 Y~~~yt--rnGr-hlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LH-neq~~AVAQK-~y~yvYD~-~GtElHC  205 (545)
T KOG1272|consen  133 YHLDYT--RNGR-HLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLH-NEQFFAVAQK-KYVYVYDN-NGTELHC  205 (545)
T ss_pred             eeeeec--CCcc-EEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhc-chHHHHhhhh-ceEEEecC-CCcEEee
Confidence            455555  8899 99999999999999999999888877 357899999988 7777777655 77999996 6777888


Q ss_pred             eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeec
Q 022590           92 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  171 (294)
Q Consensus        92 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  171 (294)
                      +.    -...|..+.|.| ...+|++++..|.++.-|+..+..                       +..+..-.+.+..+
T Consensus       206 lk----~~~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gkl-----------------------Va~~~t~~G~~~vm  257 (545)
T KOG1272|consen  206 LK----RHIRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKL-----------------------VASIRTGAGRTDVM  257 (545)
T ss_pred             hh----hcCchhhhcccc-hhheeeecccCCceEEEeechhhh-----------------------hHHHHccCCccchh
Confidence            77    456799999999 888999999999999999998543                       22333333444444


Q ss_pred             cee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC
Q 022590          172 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  249 (294)
Q Consensus       172 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  249 (294)
                      .-+  ...+-+|...|+|.+|...+.+         ++..+..|.++|.++++.+.|  .|+++.+.|..++|||++...
T Consensus       258 ~qNP~NaVih~GhsnGtVSlWSP~ske---------PLvKiLcH~g~V~siAv~~~G--~YMaTtG~Dr~~kIWDlR~~~  326 (545)
T KOG1272|consen  258 KQNPYNAVIHLGHSNGTVSLWSPNSKE---------PLVKILCHRGPVSSIAVDRGG--RYMATTGLDRKVKIWDLRNFY  326 (545)
T ss_pred             hcCCccceEEEcCCCceEEecCCCCcc---------hHHHHHhcCCCcceEEECCCC--cEEeecccccceeEeeecccc
Confidence            444  5577788999999999998765         566777889999999999999  699999999999999999876


Q ss_pred             ceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          250 PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      .......     ..+...+++|..| +||. +....|.||.
T Consensus       327 ql~t~~t-----p~~a~~ls~Sqkg-lLA~-~~G~~v~iw~  360 (545)
T KOG1272|consen  327 QLHTYRT-----PHPASNLSLSQKG-LLAL-SYGDHVQIWK  360 (545)
T ss_pred             ccceeec-----CCCcccccccccc-ceee-ecCCeeeeeh
Confidence            3333222     2457788888765 3444 4455688884

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.1e-16  Score=115.09  Aligned_cols=232  Identities=14%  Similarity=0.198  Sum_probs=152.6

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-   86 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-   86 (294)
                      -.+..++|..  .-. .+|++..|-.|++||-.. +....++ .....|+|++|-|.....|+.|+..| |.+|..... 
T Consensus        99 ~dlr~~aWhq--H~~-~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tl  173 (445)
T KOG2139|consen   99 IDLRGVAWHQ--HII-AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTL  173 (445)
T ss_pred             cceeeEeech--hhh-hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccc
Confidence            3566788873  232 688899999999999766 4444444 34568999999998888888888855 889976521 


Q ss_pred             ---c--------eEEEeeccCCCCCceeEEEEecCCCceEEeeec-CCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590           87 ---I--------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  154 (294)
Q Consensus        87 ---~--------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (294)
                         .        ....++. .+| .+|++|.|++ ++..+++++. |..|.+||..++...                   
T Consensus       174 n~~r~~~~~s~~~~qvl~~-pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~-------------------  231 (445)
T KOG2139|consen  174 NANRNIRMMSTHHLQVLQD-PGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKI-------------------  231 (445)
T ss_pred             ccccccccccccchhheeC-CCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcc-------------------
Confidence               1        1111221 144 6899999999 7888888764 678999999984321                   


Q ss_pred             eeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          155 QFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       155 ~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                        |+  .....+.+.-+.|+  +++|+++.-|+..++|+.....         .........+.+...+|+|+|. .+|+
T Consensus       232 --pL--~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w---------t~erw~lgsgrvqtacWspcGs-fLLf  297 (445)
T KOG2139|consen  232 --PL--IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW---------TKERWILGSGRVQTACWSPCGS-FLLF  297 (445)
T ss_pred             --cc--cccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc---------eecceeccCCceeeeeecCCCC-EEEE
Confidence              11  12344567777886  8899999999999999654321         1122223345788999999996 3555


Q ss_pred             EEcCCCeEEEEeccCCCc--ee-----------eeecc-------ccccCCCeEEEEEccCCCEEEEeccC
Q 022590          233 IGNREGKIFVWELQSSPP--VL-----------IARLS-------HAQSKSPIRQTAMSYDGSTILSCCED  283 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~--~~-----------~~~~~-------~~~~~~~v~~~~~s~~~~~l~s~~~d  283 (294)
                      +.+..  -++|.+...+.  ..           ...+.       ..-..+++.+++|.|.|.+||+.-..
T Consensus       298 ~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  298 ACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             EEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence            55543  34454432211  00           01111       01124678999999999999986443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=1.1e-16  Score=127.76  Aligned_cols=211  Identities=15%  Similarity=0.098  Sum_probs=136.9

Q ss_pred             CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---CcEEEEEcCCCceEEEeeccCCCCCceeEEEEe
Q 022590           32 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  108 (294)
Q Consensus        32 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~  108 (294)
                      +..|.+||.+... .+.+..|...+.+.+|+| +++.|+.++.+   ..|.+||+.+++.... ..   ..+....++|+
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~---~~g~~~~~~wS  256 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVV-AS---FRGHNGAPAFS  256 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEE-ec---CCCccCceeEC
Confidence            4689999986554 456777888999999999 88888877653   3699999988764332 21   22234468999


Q ss_pred             cCCCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee-CC
Q 022590          109 PSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VD  184 (294)
Q Consensus       109 ~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d  184 (294)
                      | ++..|+.+ +.+|.+.+|.+....                      .....+..+...+....|+  |+.|+..+ .+
T Consensus       257 P-DG~~La~~~~~~g~~~Iy~~d~~~----------------------~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~  313 (429)
T PRK01742        257 P-DGSRLAFASSKDGVLNIYVMGANG----------------------GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS  313 (429)
T ss_pred             C-CCCEEEEEEecCCcEEEEEEECCC----------------------CCeEeeccCCCCcCCEEECCCCCEEEEEECCC
Confidence            9 77767665 468877666443210                      0122333455556677776  66665444 57


Q ss_pred             CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCC
Q 022590          185 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP  264 (294)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  264 (294)
                      +..++|++.....     .   .... .+..  ....|+|+++  .++..+.++ +.+||+.+++.....  .  .  ..
T Consensus       314 g~~~I~~~~~~~~-----~---~~~l-~~~~--~~~~~SpDG~--~ia~~~~~~-i~~~Dl~~g~~~~lt--~--~--~~  373 (429)
T PRK01742        314 GSPQVYRMSASGG-----G---ASLV-GGRG--YSAQISADGK--TLVMINGDN-VVKQDLTSGSTEVLS--S--T--FL  373 (429)
T ss_pred             CCceEEEEECCCC-----C---eEEe-cCCC--CCccCCCCCC--EEEEEcCCC-EEEEECCCCCeEEec--C--C--CC
Confidence            8888888754321     1   1111 1222  3467999994  676666655 666999887633221  1  1  12


Q ss_pred             eEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          265 IRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       265 v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ...+.|+|+|++|+.++.+|.+.+|++
T Consensus       374 ~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        374 DESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CCCceECCCCCEEEEEEcCCCceEEEE
Confidence            346789999999999999998888875

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.77  E-value=1.4e-16  Score=127.13  Aligned_cols=216  Identities=17%  Similarity=0.118  Sum_probs=137.7

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecC---CeEEEEEcCCccc--cceecccCcceEEEEeCCCCCceEEEe-eCCCcE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSA-SKDESV   78 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~i   78 (294)
                      ..|...+...+|+  |||+ .|+..+.+   ..|++||+.+++.  +..+.+   ....++|+| +++.|+.+ +.+|.+
T Consensus       200 t~~~~~v~~p~wS--PDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSP-DG~~La~~~~~~g~~  272 (429)
T PRK01742        200 NRSSQPLMSPAWS--PDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSP-DGSRLAFASSKDGVL  272 (429)
T ss_pred             ccCCCccccceEc--CCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECC-CCCEEEEEEecCCcE
Confidence            3566788899998  9998 77776543   4799999988753  333333   345689999 77777665 468876


Q ss_pred             EEE--EcCCCceEEEeeccCCCCCceeEEEEecCCCceEE-eeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           79 RLW--NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        79 ~vw--d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      .||  |+.+++. ..+.   .+...+....|+| ++..|+ ++..+|..++|++......                    
T Consensus       273 ~Iy~~d~~~~~~-~~lt---~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~--------------------  327 (429)
T PRK01742        273 NIYVMGANGGTP-SQLT---SGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGG--------------------  327 (429)
T ss_pred             EEEEEECCCCCe-Eeec---cCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC--------------------
Confidence            666  5555554 3344   3666788999999 666555 4456788999987642110                    


Q ss_pred             eceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590          156 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                        ...+ .+..  ....|+  ++.++..+.++ +.+||+.+++..       .+   ... .......|+|++  .+++.
T Consensus       328 --~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~-------~l---t~~-~~~~~~~~sPdG--~~i~~  388 (429)
T PRK01742        328 --ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTE-------VL---SST-FLDESPSISPNG--IMIIY  388 (429)
T ss_pred             --eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE-------Ee---cCC-CCCCCceECCCC--CEEEE
Confidence              0011 1222  223443  78888777655 556998876421       11   111 112457799999  58888


Q ss_pred             EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590          234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD  273 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (294)
                      ++.+|...+|++..........+.  .|.+.+...+|+|-
T Consensus       389 ~s~~g~~~~l~~~~~~G~~~~~l~--~~~g~~~~p~wsp~  426 (429)
T PRK01742        389 SSTQGLGKVLQLVSADGRFKARLP--GSDGQVKFPAWSPY  426 (429)
T ss_pred             EEcCCCceEEEEEECCCCceEEcc--CCCCCCCCcccCCC
Confidence            888898888886432222444444  55567888999984

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.76  E-value=5.4e-19  Score=132.25  Aligned_cols=228  Identities=16%  Similarity=0.195  Sum_probs=172.0

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      .+.|.++.|-  .+.+ ++|++- ...++||| ..|..++.++.| ..|..+.|-| ..-+|++++..|.++.-|+.+|+
T Consensus       170 ~Etv~Dv~~L--Hneq-~~AVAQ-K~y~yvYD-~~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~Gk  242 (545)
T KOG1272|consen  170 METVRDVTFL--HNEQ-FFAVAQ-KKYVYVYD-NNGTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGK  242 (545)
T ss_pred             hhhhhhhhhh--cchH-HHHhhh-hceEEEec-CCCcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhh
Confidence            3566677775  4444 666654 55899999 467777778765 6789999999 77889999999999999999999


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      .+..+..   -.+.+..++-+| -+..+-+|...|+|.+|....                       ..|+..+..|.++
T Consensus       243 lVa~~~t---~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~s-----------------------kePLvKiLcH~g~  295 (545)
T KOG1272|consen  243 LVASIRT---GAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNS-----------------------KEPLVKILCHRGP  295 (545)
T ss_pred             hhHHHHc---cCCccchhhcCC-ccceEEEcCCCceEEecCCCC-----------------------cchHHHHHhcCCC
Confidence            9998873   667889999999 778899999999999999998                       7788889999999


Q ss_pred             eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      |.+++++  |.++++.+.|..++|||++...+         +..+.. ..+...+++|..+   +||.+ ....+.+|.-
T Consensus       296 V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q---------l~t~~t-p~~a~~ls~Sqkg---lLA~~-~G~~v~iw~d  361 (545)
T KOG1272|consen  296 VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ---------LHTYRT-PHPASNLSLSQKG---LLALS-YGDHVQIWKD  361 (545)
T ss_pred             cceEEECCCCcEEeecccccceeEeeeccccc---------cceeec-CCCcccccccccc---ceeee-cCCeeeeehh
Confidence            9999997  99999999999999999997652         222222 3456678888877   45544 4557999953


Q ss_pred             c-CCC-ceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590          246 Q-SSP-PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       246 ~-~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                      . .+. ......+.+ ...++|..+.|.|-...|-.|...|
T Consensus       362 ~~~~s~~~~~pYm~H-~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  362 ALKGSGHGETPYMNH-RCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             hhcCCCCCCcchhhh-ccCcccccceeccHHHeeeccccCC
Confidence            2 211 111112222 2335899999999766665554444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.2e-16  Score=121.63  Aligned_cols=246  Identities=14%  Similarity=0.162  Sum_probs=173.0

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc----------------------------ceecccC----
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH----------------------------KSFVGHG----   53 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----------------------------~~~~~h~----   53 (294)
                      ++.+.-+.|..+  |||+.++|+|...-.|++||+.+..+.                            +.+.-|.    
T Consensus        49 e~p~ast~ik~s--~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~  126 (703)
T KOG2321|consen   49 EMPTASTRIKVS--PDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR  126 (703)
T ss_pred             CCccccceeEec--CCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence            445555666665  999988899999999999998654211                            1111111    


Q ss_pred             -------cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590           54 -------DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  126 (294)
Q Consensus        54 -------~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~  126 (294)
                             ..-.+++++..+..+++.|+ ...|.=++++.|..+..+.   -..+.++++..++ ...+|++|+.+|.+-.
T Consensus       127 hy~~RIP~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~-~hgLla~Gt~~g~VEf  201 (703)
T KOG2321|consen  127 HYRTRIPKFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFE---TDSGELNVVSINE-EHGLLACGTEDGVVEF  201 (703)
T ss_pred             eeeeecCcCCccccccCCCccEEEeec-CcceEEEEccccccccccc---cccccceeeeecC-ccceEEecccCceEEE
Confidence                   12244555543444554444 4567778999999888887   3668999999999 8888999999999999


Q ss_pred             EeccccccccccceeecCCCCCCCCceeeeceEEeecCCC-----ceeeccee--cceEEEeeCCCeEEEecCCCCCCCC
Q 022590          127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-----YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP  199 (294)
Q Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~  199 (294)
                      ||.+..........                 ......|+.     .|+++.|+  |-.+++|+.+|.+.|||++..+.  
T Consensus       202 wDpR~ksrv~~l~~-----------------~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--  262 (703)
T KOG2321|consen  202 WDPRDKSRVGTLDA-----------------ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--  262 (703)
T ss_pred             ecchhhhhheeeec-----------------ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--
Confidence            99998332111110                 111222333     48999996  66899999999999999998764  


Q ss_pred             CCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590          200 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS  279 (294)
Q Consensus       200 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  279 (294)
                            .+..-.....+|..+.|.+.+..+.+++. ....++|||-.++++......     ...++.+|+-|++.++++
T Consensus       263 ------l~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-----t~~lND~C~~p~sGm~f~  330 (703)
T KOG2321|consen  263 ------LLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEP-----TSDLNDFCFVPGSGMFFT  330 (703)
T ss_pred             ------eeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccc-----cCCcCceeeecCCceEEE
Confidence                  44444555678889999887554556554 467899999999975433322     245999999999999999


Q ss_pred             eccCCcEEEE
Q 022590          280 CCEDGAIWRW  289 (294)
Q Consensus       280 ~~~dg~i~vw  289 (294)
                      +-+++.+..|
T Consensus       331 Ane~~~m~~y  340 (703)
T KOG2321|consen  331 ANESSKMHTY  340 (703)
T ss_pred             ecCCCcceeE
Confidence            9888877655

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=5.6e-17  Score=119.50  Aligned_cols=211  Identities=14%  Similarity=0.152  Sum_probs=148.3

Q ss_pred             ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC------CceEEEeeccCCCCCceeEEEEecCCCceEEeeec
Q 022590           47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM  120 (294)
Q Consensus        47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~  120 (294)
                      +-+.+|.+.|++|.|+. ++++|++|+.|..+++|+++.      .+++.....  .|...|.|++|.. .+..+++|+.
T Consensus        50 KD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~--~H~SNIF~L~F~~-~N~~~~SG~~  125 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH--PHRSNIFSLEFDL-ENRFLYSGER  125 (609)
T ss_pred             hhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccC--ccccceEEEEEcc-CCeeEecCCC
Confidence            34567999999999999 799999999999999999863      344444332  4778999999998 8899999999


Q ss_pred             CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe--ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCC
Q 022590          121 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA--SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE  196 (294)
Q Consensus       121 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~  196 (294)
                      +++|...|+.+..                       .+..+  ....+.|..+..+  .+.|++.+.++.|.+||.+...
T Consensus       126 ~~~VI~HDiEt~q-----------------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  126 WGTVIKHDIETKQ-----------------------SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             cceeEeeecccce-----------------------eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            9999999999832                       22221  1222366666655  7899999999999999998765


Q ss_pred             CCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc---ccccCCCeEEEEEccC
Q 022590          197 QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS---HAQSKSPIRQTAMSYD  273 (294)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~  273 (294)
                      .     +..++. ..........+.|.|... .+|++.+..+-+-+||.+..+......-.   .........++.|+|.
T Consensus       183 ~-----~~~~~~-~AN~~~~F~t~~F~P~~P-~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~  255 (609)
T KOG4227|consen  183 N-----PISLVL-PANSGKNFYTAEFHPETP-ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPS  255 (609)
T ss_pred             C-----CCceee-ecCCCccceeeeecCCCc-eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCC
Confidence            3     222222 222234567788999876 68899999999999999876532221111   1111223467889999


Q ss_pred             CCEEEEeccCCcEEEEec
Q 022590          274 GSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       274 ~~~l~s~~~dg~i~vw~~  291 (294)
                      |..|.+--....-.+||+
T Consensus       256 G~Q~msiRR~~~P~~~D~  273 (609)
T KOG4227|consen  256 GNQFMSIRRGKCPLYFDF  273 (609)
T ss_pred             CCeehhhhccCCCEEeee
Confidence            887766543333334443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.76  E-value=2.3e-17  Score=125.90  Aligned_cols=138  Identities=20%  Similarity=0.271  Sum_probs=113.7

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----------------------------cccceecccCcceEEE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------------------------KLHKSFVGHGDSINEI   59 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------------------------~~~~~~~~h~~~v~~~   59 (294)
                      +..|+|+.|-  |.+...++++-.+|.+++||..-.                            .++..+.--++.|+..
T Consensus       219 ktsvT~ikWv--pg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f  296 (636)
T KOG2394|consen  219 KSSVTCIKWV--PGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEF  296 (636)
T ss_pred             ccceEEEEEE--eCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccce
Confidence            4789999999  444447888889999999975311                            1112222234578999


Q ss_pred             EeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc
Q 022590           60 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS  139 (294)
Q Consensus        60 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  139 (294)
                      +|+| |+++||+.+.||.+||+|..+.+.+..++   ..-+...|++|+| |+.+|++|++|-.|.||.+..        
T Consensus       297 ~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mk---SYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~e--------  363 (636)
T KOG2394|consen  297 AFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMK---SYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEE--------  363 (636)
T ss_pred             eEcC-CCceEEEEecCceEEEeeccHHHHHHHHH---hhccceEEEEEcC-CccEEEecCCcceEEEEEecc--------
Confidence            9999 99999999999999999999988877766   3557899999999 999999999999999999998        


Q ss_pred             eeecCCCCCCCCceeeeceEEeecCCCceeecceec
Q 022590          140 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG  175 (294)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  175 (294)
                                     ...+..-.+|..+|..++|+.
T Consensus       364 ---------------rRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  364 ---------------RRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ---------------ceEEEeccccccceeeEeecc
Confidence                           666778899999999999985

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.76  E-value=1.7e-16  Score=132.01  Aligned_cols=225  Identities=17%  Similarity=0.254  Sum_probs=156.8

Q ss_pred             EEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-------ceEEEeeccCCCCCceeEEEEecC
Q 022590           38 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-------ICILIFAGAGGHRNEVLSVDFHPS  110 (294)
Q Consensus        38 w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~~v~~l~~~~~  110 (294)
                      |+. .|..+..+..|...|..++.++.++.++++|+.||+|++||...-       +...++.   .....+.++.+.+ 
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys---~~~sr~~~vt~~~- 1108 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS---PEGSRVEKVTMCG- 1108 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe---ccCCceEEEEecc-
Confidence            553 577888889999999999999856699999999999999998632       1222222   2567899999998 


Q ss_pred             CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cc-eEEEeeCCCe
Q 022590          111 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GD-FILSKSVDNE  186 (294)
Q Consensus       111 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~-~l~~~~~d~~  186 (294)
                      .++.+|+++.||.|++.++..........              ..............+.+-+|.   +. .++.+..-+.
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~--------------~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVA--------------TQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEcccccccccee--------------eeeecccccCCCceEEeecccccccceeEEEEEeccc
Confidence            88889999999999999998731100000              000011111122233333442   33 7788888999


Q ss_pred             EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeE
Q 022590          187 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR  266 (294)
Q Consensus       187 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  266 (294)
                      |..||+++.....       ..+.+...+.|++++.+|.+  .+++.|+..|.+.+||++-..+.  ..+.+ ++..+|+
T Consensus      1175 iv~~D~r~~~~~w-------~lk~~~~hG~vTSi~idp~~--~WlviGts~G~l~lWDLRF~~~i--~sw~~-P~~~~i~ 1242 (1431)
T KOG1240|consen 1175 IVSWDTRMRHDAW-------RLKNQLRHGLVTSIVIDPWC--NWLVIGTSRGQLVLWDLRFRVPI--LSWEH-PARAPIR 1242 (1431)
T ss_pred             eEEecchhhhhHH-------hhhcCccccceeEEEecCCc--eEEEEecCCceEEEEEeecCcee--ecccC-cccCCcc
Confidence            9999999765321       12233345779999999999  69999999999999999988644  34443 3347888


Q ss_pred             EEEEccCC---CEEEEec--cCCcEEEEecCC
Q 022590          267 QTAMSYDG---STILSCC--EDGAIWRWDAIP  293 (294)
Q Consensus       267 ~~~~s~~~---~~l~s~~--~dg~i~vw~~~~  293 (294)
                      .+..+|-.   ...++++  ..+.|.+|++..
T Consensus      1243 ~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1243 HVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred             eEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence            88887743   4555544  567899999864

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.75  E-value=1.8e-16  Score=121.02  Aligned_cols=192  Identities=14%  Similarity=0.127  Sum_probs=133.5

Q ss_pred             CCceEEEeeCCCcEEEEEcCCCceEEEeecc-CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeec
Q 022590           65 KPSLVVSASKDESVRLWNVQTGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT  143 (294)
Q Consensus        65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  143 (294)
                      .+--|..|-.-|.|.+.|....+..+.+... .-.+..|+|+.|-|.+...++++-.+|.+.+||..-............
T Consensus       184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~  263 (636)
T KOG2394|consen  184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL  263 (636)
T ss_pred             CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence            4445677778899999887663322222110 013468999999998888899999999999998854322222222221


Q ss_pred             CCCCCCCC-----ceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC
Q 022590          144 DLPSKFPT-----KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD  216 (294)
Q Consensus       144 ~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  216 (294)
                      ..+..+..     .....|+..+..-...|...+|+  |.+||+.+.||.+||||..+.+         ++...+.--+.
T Consensus       264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e---------Llg~mkSYFGG  334 (636)
T KOG2394|consen  264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE---------LLGVMKSYFGG  334 (636)
T ss_pred             CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH---------HHHHHHhhccc
Confidence            21111111     11124555555566788888886  8999999999999999998655         33333333467


Q ss_pred             eeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEc
Q 022590          217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS  271 (294)
Q Consensus       217 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s  271 (294)
                      ..+++|+||+  .++++|++|-.|.||.+...+  .+.+-.  +|+..|+.++|.
T Consensus       335 LLCvcWSPDG--KyIvtGGEDDLVtVwSf~erR--VVARGq--GHkSWVs~VaFD  383 (636)
T KOG2394|consen  335 LLCVCWSPDG--KYIVTGGEDDLVTVWSFEERR--VVARGQ--GHKSWVSVVAFD  383 (636)
T ss_pred             eEEEEEcCCc--cEEEecCCcceEEEEEeccce--EEEecc--ccccceeeEeec
Confidence            8899999999  599999999999999998875  444444  899999999998

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.75  E-value=1.8e-17  Score=119.32  Aligned_cols=222  Identities=15%  Similarity=0.132  Sum_probs=156.6

Q ss_pred             eecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC
Q 022590           17 ACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG   96 (294)
Q Consensus        17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~   96 (294)
                      +|+|+|+ ++|+.+.. .+.|-|.++.+..+.+.- -+.|.-+.|..+....|.....|+.|.+|++...+-...+.   
T Consensus        15 ~fSp~g~-yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---   88 (447)
T KOG4497|consen   15 SFSPCGN-YIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID---   88 (447)
T ss_pred             eECCCCC-eeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec---
Confidence            3459999 99998876 888999888887766653 45678899998455566677889999999999998888887   


Q ss_pred             CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--
Q 022590           97 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  174 (294)
Q Consensus        97 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  174 (294)
                      .-..++.+++|+|++.++|.+...|-.|.+|.+.+..                        ...+......+..++|+  
T Consensus        89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~------------------------~~~~~~pK~~~kg~~f~~d  144 (447)
T KOG4497|consen   89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK------------------------GYLLPHPKTNVKGYAFHPD  144 (447)
T ss_pred             cCCCcceeeeECCCcceEeeeecceeEEEEEEeccce------------------------eEEecccccCceeEEECCC
Confidence            5778899999999555888888999999999999721                        22222233445666665  


Q ss_pred             cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590          175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  254 (294)
Q Consensus       175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  254 (294)
                      |++.+.++.......+.+...      .....+.++....-..+.+.|+|+|  +.++         +||---.-.+...
T Consensus       145 g~f~ai~sRrDCkdyv~i~~c------~~W~ll~~f~~dT~DltgieWsPdg--~~la---------Vwd~~Leykv~aY  207 (447)
T KOG4497|consen  145 GQFCAILSRRDCKDYVQISSC------KAWILLKEFKLDTIDLTGIEWSPDG--NWLA---------VWDNVLEYKVYAY  207 (447)
T ss_pred             CceeeeeecccHHHHHHHHhh------HHHHHHHhcCCCcccccCceECCCC--cEEE---------Eecchhhheeeee
Confidence            777766665422222222211      1344566677777778899999999  4555         5553222111111


Q ss_pred             eccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          255 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       255 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                           ...-.+..++|+|.+++|+.|+.|+.++|.+
T Consensus       208 -----e~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  208 -----ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             -----eeccceeEEEeccccceEEeeccchhhhhhc
Confidence                 1224588999999999999999999998754

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.75  E-value=1.7e-14  Score=103.56  Aligned_cols=219  Identities=14%  Similarity=0.217  Sum_probs=150.1

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC-CCceEEEeeccCCCCCceeEEEEecCC
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAGGHRNEVLSVDFHPSD  111 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~  111 (294)
                      ..|.|||-...+++.++. ...+|.++.+.+   ..+++.- .+.|.||... +.+.+..+..... ...+.+++-+. +
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~N-PkGlC~~~~~~-~  147 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSN-PKGLCSLCPTS-N  147 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccC-CCceEeecCCC-C
Confidence            579999966667777776 678999999987   4555554 4789999997 5566666654221 22344444333 3


Q ss_pred             CceEEe-eecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCe-E
Q 022590          112 IYRIAS-CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNE-I  187 (294)
Q Consensus       112 ~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~-i  187 (294)
                      ..+||. |-.-|.|++-|+.....                     .+.....+|...|.|++.+  |..+|+++..|+ |
T Consensus       148 k~~LafPg~k~GqvQi~dL~~~~~---------------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI  206 (346)
T KOG2111|consen  148 KSLLAFPGFKTGQVQIVDLASTKP---------------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLI  206 (346)
T ss_pred             ceEEEcCCCccceEEEEEhhhcCc---------------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Confidence            334443 44669999999987321                     1346788999999999997  999999999998 8


Q ss_pred             EEecCCCCCCCCCCCCceeeeeee--cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceee-------e--ec
Q 022590          188 VLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLI-------A--RL  256 (294)
Q Consensus       188 ~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~--~~  256 (294)
                      ||||..+++.         +.++.  .....+++++|+|+.  .+|++++..|++.+|.++.......       .  .+
T Consensus       207 RIFdt~~g~~---------l~E~RRG~d~A~iy~iaFSp~~--s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~l  275 (346)
T KOG2111|consen  207 RIFDTEDGTL---------LQELRRGVDRADIYCIAFSPNS--SWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVL  275 (346)
T ss_pred             EEEEcCCCcE---------eeeeecCCchheEEEEEeCCCc--cEEEEEcCCCeEEEEEeecCCCCcccccccccccccc
Confidence            9999998873         33333  234679999999999  6999999999999999876431111       0  00


Q ss_pred             c-----------ccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          257 S-----------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       257 ~-----------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      +           ..-..++..-++|-.+.+.++..+.||.-+-+.
T Consensus       276 pky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~  320 (346)
T KOG2111|consen  276 PKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK  320 (346)
T ss_pred             chhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence            0           001123455567776656666666788655443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=4.3e-16  Score=114.45  Aligned_cols=221  Identities=12%  Similarity=0.164  Sum_probs=163.4

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc----ccceecccCcceEEEEeCCCCCceEEEeeCC--CcEEEEE
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKD--ESVRLWN   82 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~i~vwd   82 (294)
                      .+|-.++.   .+|  .|+++-.+|.+.+|..+.+.    ....+..+ ..+..|.-++....++++|+..  ..+.+||
T Consensus       106 ~~I~gl~~---~dg--~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd  179 (412)
T KOG3881|consen  106 KSIKGLKL---ADG--TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD  179 (412)
T ss_pred             ccccchhh---cCC--EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence            34445554   356  58888999999999987443    22233323 5677777788677788889999  8899999


Q ss_pred             cCCCceEEEeeccCC------CCCceeEEEEecCC--CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590           83 VQTGICILIFAGAGG------HRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  154 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~------~~~~v~~l~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (294)
                      +++.+.+..-+....      -.-.++++.|-+ +  .+.|++++.-+.+++||.+..                      
T Consensus       180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~q----------------------  236 (412)
T KOG3881|consen  180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQ----------------------  236 (412)
T ss_pred             cccceeeeeccCCCCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCccc----------------------
Confidence            998866554432110      122467889988 6  788999999999999999974                      


Q ss_pred             eeceEEeecCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          155 QFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       155 ~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      +.|+..+..-+.+++++..  +++.+++|..-+.+..||++.+..        ....+..-.+.+.++..+|..  .+++
T Consensus       237 RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--------~g~~~kg~tGsirsih~hp~~--~~la  306 (412)
T KOG3881|consen  237 RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--------LGCGLKGITGSIRSIHCHPTH--PVLA  306 (412)
T ss_pred             CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee--------eccccCCccCCcceEEEcCCC--ceEE
Confidence            5677777777788887766  499999999999999999998763        333466677889999999988  5999


Q ss_pred             EEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590          233 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD  273 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (294)
                      +++-|..+||+|+++.+.+....+.     ..++++-+.++
T Consensus       307 s~GLDRyvRIhD~ktrkll~kvYvK-----s~lt~il~~~~  342 (412)
T KOG3881|consen  307 SCGLDRYVRIHDIKTRKLLHKVYVK-----SRLTFILLRDD  342 (412)
T ss_pred             eeccceeEEEeecccchhhhhhhhh-----ccccEEEecCC
Confidence            9999999999999996533332222     34666666543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.2e-14  Score=106.11  Aligned_cols=249  Identities=15%  Similarity=0.184  Sum_probs=155.1

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cc----------cceecccCcceEEEEeCCCCCceEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KL----------HKSFVGHGDSINEIRTQPLKPSLVVS   71 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~----------~~~~~~h~~~v~~~~~~~~~~~~l~s   71 (294)
                      ..+..|.|++|-  |.+..-|+.|+..| |.+|..+..    ..          +...++| .+|++|+|.+ ++..+++
T Consensus       138 ~sQrnvtclawR--PlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~t  212 (445)
T KOG2139|consen  138 VSQRNVTCLAWR--PLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVT  212 (445)
T ss_pred             hhhcceeEEEec--cCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEee
Confidence            456789999998  65555788888765 999986421    11          1122345 6899999999 7888888


Q ss_pred             eeC-CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590           72 ASK-DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  150 (294)
Q Consensus        72 ~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (294)
                      ++. |..|.|||+.++..+....   .-.+.++-+.|+| ++.+|+++.-|+..++|.....                  
T Consensus       213 AS~gsssi~iWdpdtg~~~pL~~---~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~------------------  270 (445)
T KOG2139|consen  213 ASFGSSSIMIWDPDTGQKIPLIP---KGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQS------------------  270 (445)
T ss_pred             cccCcceEEEEcCCCCCcccccc---cCCCceeeEEEcC-CCCEEEEecccceeeeehhccc------------------
Confidence            875 6789999999998776553   2456789999999 9999999999999999976652                  


Q ss_pred             CceeeeceEEeecCCCceeeccee--cceE-EEeeCCCeEEEecCCCCCCCCCC------CCceeeeeee---------c
Q 022590          151 TKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGE------GTADILQKYP---------V  212 (294)
Q Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~---------~  212 (294)
                           ........-.+.|....|+  |..| ++.+..-  ++|.+.-..+....      ....++..++         .
T Consensus       271 -----wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l  343 (445)
T KOG2139|consen  271 -----WTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL  343 (445)
T ss_pred             -----ceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccc
Confidence                 1122222334477777776  4443 3333333  33433322111100      0111111111         1


Q ss_pred             CCCCeeEEEEcccCCcceEEEEcCC--------CeEEEEeccCCCceeeeeccccccCCCeEEEEEcc---CCCEEEEec
Q 022590          213 PECDIWFIKFSCDFHYNAAAIGNRE--------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY---DGSTILSCC  281 (294)
Q Consensus       213 ~~~~i~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~  281 (294)
                      -.+++.+++|.|.|  .+|++....        +.|.+||.+..-+.......... ...-..++|+|   ++.+|..+=
T Consensus       344 ~cgeaq~lawDpsG--eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~-ge~P~~IsF~pl~n~g~lLsiaW  420 (445)
T KOG2139|consen  344 CCGEAQCLAWDPSG--EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIG-GEYPAYISFGPLKNEGRLLSIAW  420 (445)
T ss_pred             ccCccceeeECCCC--CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEeccccc-CCCCceEEeeecccCCcEEEEEe
Confidence            13578899999999  577776543        34777888776433332111111 12244566665   566777776


Q ss_pred             cCCcEEEEec
Q 022590          282 EDGAIWRWDA  291 (294)
Q Consensus       282 ~dg~i~vw~~  291 (294)
                      ..|.+.-|++
T Consensus       421 sTGriq~ypl  430 (445)
T KOG2139|consen  421 STGRIQRYPL  430 (445)
T ss_pred             ccCceEeeee
Confidence            7777776654

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.72  E-value=5.9e-17  Score=113.04  Aligned_cols=160  Identities=18%  Similarity=0.231  Sum_probs=126.0

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----------cccceecccCcceEEEEeCCCCCceEEEeeCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKD   75 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d   75 (294)
                      .+.+.+.|..|.+.-....++++|-.+|.+.+||+.++          +.......|..+|.++.|.+ ....=++|+.+
T Consensus       148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~  226 (323)
T KOG0322|consen  148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGAD  226 (323)
T ss_pred             cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcc
Confidence            34567888887654444556788889999999999987          33344557999999999988 55556788888


Q ss_pred             CcEEEEEcCCC--ceE-EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCc
Q 022590           76 ESVRLWNVQTG--ICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  152 (294)
Q Consensus        76 g~i~vwd~~~~--~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (294)
                      ..+..|++...  .+. .....  -..-.|..+..-| ++..+|+++.|+.||||..++                     
T Consensus       227 dkl~~~Sl~~s~gslq~~~e~~--lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrt---------------------  282 (323)
T KOG0322|consen  227 DKLVMYSLNHSTGSLQIRKEIT--LKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRT---------------------  282 (323)
T ss_pred             ccceeeeeccccCcccccceEE--ecCCCccceEEcc-CCcEEeecccCCcEEEEEecc---------------------
Confidence            89999988643  211 11111  1223588899999 999999999999999999999                     


Q ss_pred             eeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecC
Q 022590          153 YVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP  192 (294)
Q Consensus       153 ~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~  192 (294)
                        ..|+..+..|.+.|.+++|+  .+.+++++.|++|.+|++
T Consensus       283 --l~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  283 --LNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             --CCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence              66788899999999999998  479999999999999986

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.70  E-value=7.4e-15  Score=104.25  Aligned_cols=249  Identities=14%  Similarity=0.097  Sum_probs=168.5

Q ss_pred             ceeEEEEEeecCCCc-eEEEEeecCCeEEEEEcCCccccceecccC------cceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            9 ESFYTVSWACNVDGI-PFLVAGGINGIIRVIDVSNEKLHKSFVGHG------DSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~------~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      ..++.+.|+.-+.+. ..++-+..+|.|.++..........+.+-.      ....++.|++ .+..++++-.+|.+.+-
T Consensus        70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~-~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDIST-SGTKIFVSDSRGSISGV  148 (339)
T ss_pred             cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeec-cCceEEEEcCCCcEEEE
Confidence            457778888655443 256777788999999876554443333211      1245778888 77789999999999866


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      +...... ...+..++|..+++..+|+-.+++++.+|+.|+.+..||+|...                     .......
T Consensus       149 ~~t~~~l-e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---------------------~~i~~n~  206 (339)
T KOG0280|consen  149 YETEMVL-EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---------------------TFIWHNS  206 (339)
T ss_pred             ecceeee-eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---------------------ceeeecc
Confidence            6544333 22223337999999999998788999999999999999999421                     1122234


Q ss_pred             ecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          162 SVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       162 ~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ..|...|.++.-+   +.++++|+.|-.|++||.|+-.+        ++..-+. .+.|+.+..+|.-...+++++-.+ 
T Consensus       207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k--------Pl~~~~v-~GGVWRi~~~p~~~~~lL~~CMh~-  276 (339)
T KOG0280|consen  207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK--------PLFKAKV-GGGVWRIKHHPEIFHRLLAACMHN-  276 (339)
T ss_pred             eeeecceEEEecCCCCCceEEEeccccceeeeehhcccC--------ccccCcc-ccceEEEEecchhhhHHHHHHHhc-
Confidence            5678888888776   56999999999999999996443        2222222 377999999998754445544444 


Q ss_pred             eEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEec-cCCcEE-EEe
Q 022590          239 KIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCC-EDGAIW-RWD  290 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~-vw~  290 (294)
                      -.+|-+.+.........+. +..|.+-...-.|.....+|||++ .|+.++ +|-
T Consensus       277 G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl  331 (339)
T KOG0280|consen  277 GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL  331 (339)
T ss_pred             CceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence            4788888766433222222 345656666666755456788865 677755 774

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=1.2e-13  Score=110.94  Aligned_cols=211  Identities=12%  Similarity=0.060  Sum_probs=134.2

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC---CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  109 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~  109 (294)
                      ..|.++|.+ +...+.+..|...+.+.+|+| +++.|+..+.   +..|.+||+.+++... +.   .+.+.+....|+|
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~---~~~g~~~~~~~SP  255 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQREL-VG---NFPGMTFAPRFSP  255 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEE-ee---cCCCcccCcEECC
Confidence            378888875 444466777888999999999 7787777653   4689999998887543 33   3566778899999


Q ss_pred             CCCceE-EeeecCCc--EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-
Q 022590          110 SDIYRI-ASCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-  183 (294)
Q Consensus       110 ~~~~~l-~~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-  183 (294)
                       ++..| ++.+.++.  |.+||+....                        ...+..+........|+  |+.++..+. 
T Consensus       256 -DG~~la~~~~~~g~~~Iy~~d~~~~~------------------------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~  310 (435)
T PRK05137        256 -DGRKVVMSLSQGGNTDIYTMDLRSGT------------------------TTRLTDSPAIDTSPSYSPDGSQIVFESDR  310 (435)
T ss_pred             -CCCEEEEEEecCCCceEEEEECCCCc------------------------eEEccCCCCccCceeEcCCCCEEEEEECC
Confidence             66554 56666665  6666776521                        12223333444455665  677766553 


Q ss_pred             CC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-C--CeEEEEeccCCCceeeeeccc
Q 022590          184 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-E--GKIFVWELQSSPPVLIARLSH  258 (294)
Q Consensus       184 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~~~~~~~~  258 (294)
                      +|  .|.++|+..++          ...+......+....|+|+++  .++.... .  ..|.+||+..+..   ..+..
T Consensus       311 ~g~~~Iy~~d~~g~~----------~~~lt~~~~~~~~~~~SpdG~--~ia~~~~~~~~~~i~~~d~~~~~~---~~lt~  375 (435)
T PRK05137        311 SGSPQLYVMNADGSN----------PRRISFGGGRYSTPVWSPRGD--LIAFTKQGGGQFSIGVMKPDGSGE---RILTS  375 (435)
T ss_pred             CCCCeEEEEECCCCC----------eEEeecCCCcccCeEECCCCC--EEEEEEcCCCceEEEEEECCCCce---EeccC
Confidence            33  68888876543          222222234456678999995  5554433 2  3688888765532   22221


Q ss_pred             cccCCCeEEEEEccCCCEEEEeccC------CcEEEEecC
Q 022590          259 AQSKSPIRQTAMSYDGSTILSCCED------GAIWRWDAI  292 (294)
Q Consensus       259 ~~~~~~v~~~~~s~~~~~l~s~~~d------g~i~vw~~~  292 (294)
                       .  ..+....|+|||+.|+..+.+      ..++++|+.
T Consensus       376 -~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        376 -G--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             -C--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence             1  246778999999988765443      246777764

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=4e-14  Score=105.23  Aligned_cols=158  Identities=20%  Similarity=0.235  Sum_probs=112.6

Q ss_pred             eEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEE
Q 022590          103 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  180 (294)
Q Consensus       103 ~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  180 (294)
                      ..++|++ ++..+++++.||++|+|+...                       ...+.....|...|.++.|+  +..|++
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps-----------------------~~t~l~e~~~~~eV~DL~FS~dgk~las  203 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPS-----------------------MLTILEEIAHHAEVKDLDFSPDGKFLAS  203 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCc-----------------------chhhhhhHhhcCccccceeCCCCcEEEE
Confidence            6789998 889999999999999999776                       34455667799999999997  789999


Q ss_pred             eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccC---CcceEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590          181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF---HYNAAAIGNREGKIFVWELQSSPPVLIARLS  257 (294)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  257 (294)
                      .+.| ..+||+.+++.......+       .........+.|+.++   ....++.-...+.|+.|++.....-...+..
T Consensus       204 ig~d-~~~VW~~~~g~~~a~~t~-------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~  275 (398)
T KOG0771|consen  204 IGAD-SARVWSVNTGAALARKTP-------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR  275 (398)
T ss_pred             ecCC-ceEEEEeccCchhhhcCC-------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchh
Confidence            9999 999999998843211111       1112334556777766   2223334455667888777554321111111


Q ss_pred             -ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          258 -HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       258 -~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                       .......|++++.+++|+++|.|+.||.|-|++..
T Consensus       276 ~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~  311 (398)
T KOG0771|consen  276 KKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAK  311 (398)
T ss_pred             hhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEec
Confidence             11223579999999999999999999999999875

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.68  E-value=3.1e-14  Score=102.87  Aligned_cols=269  Identities=16%  Similarity=0.262  Sum_probs=166.8

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      +.|.-+.|+  .|....|.....++.|.+|++...+-...+....+++.+++|+|++..+|.+...|-.|.+|.+.+.+.
T Consensus        49 dki~yieW~--ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~  126 (447)
T KOG4497|consen   49 DKIVYIEWK--ADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG  126 (447)
T ss_pred             HHhhheeee--ccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence            356667887  667656777889999999999988888888888899999999994446777888899999999987766


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc---------cccc--cccceeecCCCCCCC--Cceee
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE---------FWTY--VEKSFTWTDLPSKFP--TKYVQ  155 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~---------~~~~--~~~~~~~~~~~~~~~--~~~~~  155 (294)
                      ...-.    .+..+..++|+| ++++.+.++.-.......+..         ....  ....+.+.+......  .....
T Consensus       127 ~~~~~----pK~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le  201 (447)
T KOG4497|consen  127 YLLPH----PKTNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE  201 (447)
T ss_pred             EEecc----cccCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh
Confidence            54322    344578899999 888777665421111111110         0000  000111111110000  00000


Q ss_pred             eceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCC---------------------------------
Q 022590          156 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG---------------------------------  200 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~---------------------------------  200 (294)
                      ..+. .....-.+..+.|+  ++++++|+.|+.+|+.+--+.+....                                 
T Consensus       202 ykv~-aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~  280 (447)
T KOG4497|consen  202 YKVY-AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFT  280 (447)
T ss_pred             heee-eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccC
Confidence            1111 11122457777786  78999999999988854332211000                                 


Q ss_pred             ----------C--------------CCceeeeeeecCCCCeeEEEEcccCCcceEEEEc--CCCeEEEEeccCCCceeee
Q 022590          201 ----------E--------------GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKIFVWELQSSPPVLIA  254 (294)
Q Consensus       201 ----------~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~  254 (294)
                                .              ...++....+.+...+.-++|++|.  .++++-.  .-+.+.+||++..+...+.
T Consensus       281 p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds--~y~aTrnd~~PnalW~Wdlq~l~l~avL  358 (447)
T KOG4497|consen  281 PTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS--TYAATRNDKYPNALWLWDLQNLKLHAVL  358 (447)
T ss_pred             CCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc--eEEeeecCCCCceEEEEechhhhhhhhh
Confidence                      0              0001112223445667789999998  4666643  3467999999887532222


Q ss_pred             eccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          255 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       255 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                           ....+|+...|+|....|+.+.....+++|...
T Consensus       359 -----iQk~piraf~WdP~~prL~vctg~srLY~W~ps  391 (447)
T KOG4497|consen  359 -----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS  391 (447)
T ss_pred             -----hhccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence                 233679999999999999988878889999753

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.67  E-value=5.2e-13  Score=103.69  Aligned_cols=245  Identities=15%  Similarity=0.179  Sum_probs=137.8

Q ss_pred             ecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee-CCCcEEEEEcCCCceEEEeeccC
Q 022590           18 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGICILIFAGAG   96 (294)
Q Consensus        18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~   96 (294)
                      ++|||+ ++++.+.||.|.++|+.+++.+++++.- .....+++++ ++++++++. .++.+.++|.++.+.++.+....
T Consensus        44 ~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~  120 (369)
T PF02239_consen   44 FSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG  120 (369)
T ss_dssp             -TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred             ecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC-CCCEEEEEecCCCceeEeccccccceeeccccc
Confidence            359999 8888899999999999999999999854 4568899999 778777664 68999999999999988876421


Q ss_pred             ----CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecc
Q 022590           97 ----GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR  172 (294)
Q Consensus        97 ----~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  172 (294)
                          .....+.++..+|....++++.-..+.|.+.|...........                      ...........
T Consensus       121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~----------------------i~~g~~~~D~~  178 (369)
T PF02239_consen  121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT----------------------IKVGRFPHDGG  178 (369)
T ss_dssp             E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE----------------------EE--TTEEEEE
T ss_pred             ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee----------------------ecccccccccc
Confidence                1335678888888333344444555888888876632111110                      00111122222


Q ss_pred             ee--cceEEE-eeCCCeEEEecCCCCCCC----------------------------------------------CCCCC
Q 022590          173 WL--GDFILS-KSVDNEIVLWEPKMKEQS----------------------------------------------PGEGT  203 (294)
Q Consensus       173 ~~--~~~l~~-~~~d~~i~iwd~~~~~~~----------------------------------------------~~~~~  203 (294)
                      |+  ++++++ ...+..|-++|..+.+..                                              .....
T Consensus       179 ~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~  258 (369)
T PF02239_consen  179 FDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA  258 (369)
T ss_dssp             E-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB
T ss_pred             cCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc
Confidence            22  233222 122233333333322110                                              00113


Q ss_pred             ceeeeeeecCCCCeeEEEEcccCCcceEEEE----cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590          204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIG----NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS  279 (294)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  279 (294)
                      .+.+++++....+ ..+..+|+++  ++.+.    ...+.|.++|.++.+  ....+.. .....+..+.|+++|+.+..
T Consensus       259 wkvv~~I~~~G~g-lFi~thP~s~--~vwvd~~~~~~~~~v~viD~~tl~--~~~~i~~-~~~~~~~h~ef~~dG~~v~v  332 (369)
T PF02239_consen  259 WKVVKTIPTQGGG-LFIKTHPDSR--YVWVDTFLNPDADTVQVIDKKTLK--VVKTITP-GPGKRVVHMEFNPDGKEVWV  332 (369)
T ss_dssp             TSEEEEEE-SSSS---EE--TT-S--EEEEE-TT-SSHT-EEEEECCGTE--EEE-HHH-HHT--EEEEEE-TTSSEEEE
T ss_pred             CeEEEEEECCCCc-ceeecCCCCc--cEEeeccCCCCCceEEEEECcCcc--eeEEEec-cCCCcEeccEECCCCCEEEE
Confidence            3356666665555 6778899984  66665    556899999999874  3333331 12234899999999997765


Q ss_pred             ecc--CCcEEEEecCC
Q 022590          280 CCE--DGAIWRWDAIP  293 (294)
Q Consensus       280 ~~~--dg~i~vw~~~~  293 (294)
                      +..  +|.|.|||.++
T Consensus       333 S~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  333 SVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             EEE--TTEEEEEETTT
T ss_pred             EEecCCCEEEEEECCC
Confidence            543  34699999865

...

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.2e-13  Score=110.69  Aligned_cols=211  Identities=16%  Similarity=0.123  Sum_probs=131.5

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---CcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  109 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~  109 (294)
                      ..|.+||.+. ...+.+..+...+.+.+|+| +++.|+..+.+   ..|.+||+.+++.... .   ...+...+..|+|
T Consensus       184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~---~~~g~~~~~~~Sp  257 (433)
T PRK04922        184 YALQVADSDG-YNPQTILRSAEPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELV-A---SFRGINGAPSFSP  257 (433)
T ss_pred             EEEEEECCCC-CCceEeecCCCccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEe-c---cCCCCccCceECC
Confidence            4688999854 44455666778899999999 88888877643   4699999988775433 2   2444556889999


Q ss_pred             CCCceE-EeeecCC--cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-
Q 022590          110 SDIYRI-ASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-  183 (294)
Q Consensus       110 ~~~~~l-~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-  183 (294)
                       ++..+ ++.+.+|  .|++||+.++.                        ...+..+........|+  ++.++..+. 
T Consensus       258 -DG~~l~~~~s~~g~~~Iy~~d~~~g~------------------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~  312 (433)
T PRK04922        258 -DGRRLALTLSRDGNPEIYVMDLGSRQ------------------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDR  312 (433)
T ss_pred             -CCCEEEEEEeCCCCceEEEEECCCCC------------------------eEECccCCCCccceEECCCCCEEEEEECC
Confidence             66545 4556665  58888887632                        11222333333455665  677776553 


Q ss_pred             CCe--EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-CC--eEEEEeccCCCceeeeeccc
Q 022590          184 DNE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-EG--KIFVWELQSSPPVLIARLSH  258 (294)
Q Consensus       184 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~  258 (294)
                      +|.  |.++|+.+++.          ..+..........+|+|+++  .++..+. ++  .|.+||+.+++..   .+..
T Consensus       313 ~g~~~iy~~dl~~g~~----------~~lt~~g~~~~~~~~SpDG~--~Ia~~~~~~~~~~I~v~d~~~g~~~---~Lt~  377 (433)
T PRK04922        313 GGRPQIYRVAASGGSA----------ERLTFQGNYNARASVSPDGK--KIAMVHGSGGQYRIAVMDLSTGSVR---TLTP  377 (433)
T ss_pred             CCCceEEEEECCCCCe----------EEeecCCCCccCEEECCCCC--EEEEEECCCCceeEEEEECCCCCeE---ECCC
Confidence            444  66666655431          11222223344689999995  5554432 22  6999999887533   2221


Q ss_pred             cccCCCeEEEEEccCCCEEEEeccC---CcEEEEecC
Q 022590          259 AQSKSPIRQTAMSYDGSTILSCCED---GAIWRWDAI  292 (294)
Q Consensus       259 ~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~vw~~~  292 (294)
                      .   .......|+|||++|+..+.+   +.|+++++.
T Consensus       378 ~---~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        378 G---SLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             C---CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            1   124457899999988776653   347777664

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.66  E-value=3e-14  Score=103.40  Aligned_cols=227  Identities=10%  Similarity=0.122  Sum_probs=157.7

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC-Cccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-NEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      ++++|.+.|++...-  |... -+++.+.|.+++||--. .++.-..+. .-..+++++.+.+ +...|+.|-..|++.-
T Consensus        19 ~~eG~~d~vn~~~l~--~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvte   94 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILI--PKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTE   94 (404)
T ss_pred             hhcCchhhhhhheec--cCCC-CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEE
Confidence            456888899988876  4444 59999999999999643 344333332 2357899999999 8889999999999988


Q ss_pred             EEcCC----CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc-------------eeec
Q 022590           81 WNVQT----GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS-------------FTWT  143 (294)
Q Consensus        81 wd~~~----~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------~~~~  143 (294)
                      +.+..    ...++...   .|...+..+-|+. ....+++.+.|..+.---.+.+.......             ..+.
T Consensus        95 fs~sedfnkm~~~r~~~---~h~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv  170 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYL---AHQARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV  170 (404)
T ss_pred             EEhhhhhhhcchhhhhh---hhhcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence            86643    22333333   6999999999997 77888888888766543333321111111             1111


Q ss_pred             CCCCC-C----CCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC
Q 022590          144 DLPSK-F----PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD  216 (294)
Q Consensus       144 ~~~~~-~----~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  216 (294)
                      +.-.. .    .......++..+.+|.+.+.+++|+  ...+++|..|..+.+||+-....        ...+...+...
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g--------~~~el~gh~~k  242 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG--------TAYELQGHNDK  242 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc--------eeeeeccchhh
Confidence            10000 0    0111234567888999999999998  67899999999999999976542        44556667777


Q ss_pred             eeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       217 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      +..+...+.-  ..+.+++.||.|.+|+++.
T Consensus       243 V~~l~~~~~t--~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  243 VQALSYAQHT--RQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhhhhhh--eeeeeccCCCeEEEEeccc
Confidence            7777666665  5789999999999999864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=4.2e-13  Score=107.18  Aligned_cols=210  Identities=10%  Similarity=0.021  Sum_probs=130.1

Q ss_pred             eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee---CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC
Q 022590           34 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS---KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  110 (294)
Q Consensus        34 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~  110 (294)
                      .|.++|.+.... +.+..+...+...+|+| +++.|+..+   .+..|.+|++.+++......    ..+.+....|+| 
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~----~~~~~~~~~~SP-  252 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVAS----FPRHNGAPAFSP-  252 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccC----CCCCcCCeEECC-
Confidence            788998865544 44555677899999999 777777553   24579999998876543322    333455789999 


Q ss_pred             CCceEEe-eecCC--cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCC-
Q 022590          111 DIYRIAS-CGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD-  184 (294)
Q Consensus       111 ~~~~l~~-~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d-  184 (294)
                      ++..|+. .+.+|  .|++||+.+..                        ...+..+...+....|+  |+.|+..+.+ 
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~------------------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~  308 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQ------------------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQA  308 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCC------------------------EEEccCCCCCcCceEECCCCCEEEEEeCCC
Confidence            7666654 34455  48888887631                        11222233345566675  6777665543 


Q ss_pred             Ce--EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc-CC--CeEEEEeccCCCceeeeecccc
Q 022590          185 NE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-RE--GKIFVWELQSSPPVLIARLSHA  259 (294)
Q Consensus       185 ~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d--g~i~i~d~~~~~~~~~~~~~~~  259 (294)
                      +.  |.++|+..++          ...+...........|+|+++  .++... .+  ..|.+||+.+++...   +...
T Consensus       309 g~~~Iy~~d~~~g~----------~~~lt~~~~~~~~~~~SpDG~--~Ia~~~~~~g~~~I~~~dl~~g~~~~---Lt~~  373 (429)
T PRK03629        309 GRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDGK--FMVMVSSNGGQQHIAKQDLATGGVQV---LTDT  373 (429)
T ss_pred             CCceEEEEECCCCC----------eEEeecCCCCccCEEECCCCC--EEEEEEccCCCceEEEEECCCCCeEE---eCCC
Confidence            44  4444655442          122222333455688999995  554433 33  458889998875332   2211


Q ss_pred             ccCCCeEEEEEccCCCEEEEeccCCc---EEEEecC
Q 022590          260 QSKSPIRQTAMSYDGSTILSCCEDGA---IWRWDAI  292 (294)
Q Consensus       260 ~~~~~v~~~~~s~~~~~l~s~~~dg~---i~vw~~~  292 (294)
                         .......|+|||++|+.++.++.   +.++++.
T Consensus       374 ---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        374 ---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             ---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence               12346789999999999887765   6666653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1.3e-13  Score=110.23  Aligned_cols=207  Identities=15%  Similarity=0.119  Sum_probs=126.2

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---CcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  109 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~  109 (294)
                      ..|.++|. ++...+.+..+...+.+.+|+| +++.|+..+.+   ..|.+||+.+++.... .   ...+.+....|+|
T Consensus       176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~---~~~g~~~~~~~SP  249 (427)
T PRK02889        176 YQLQISDA-DGQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVV-A---NFKGSNSAPAWSP  249 (427)
T ss_pred             cEEEEECC-CCCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEe-e---cCCCCccceEECC
Confidence            46777776 3444455666788999999999 77877766543   3599999988876443 3   2445567899999


Q ss_pred             CCCceEE-eeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-CC
Q 022590          110 SDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-DN  185 (294)
Q Consensus       110 ~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d~  185 (294)
                       ++..|+ +.+.+|...+|.+....                      .....+..+........|+  |+.++..+. ++
T Consensus       250 -DG~~la~~~~~~g~~~Iy~~d~~~----------------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g  306 (427)
T PRK02889        250 -DGRTLAVALSRDGNSQIYTVNADG----------------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG  306 (427)
T ss_pred             -CCCEEEEEEccCCCceEEEEECCC----------------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC
Confidence             665554 66788887777664311                      0112222233334455665  777665553 45


Q ss_pred             eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC---eEEEEeccCCCceeeeeccccccC
Q 022590          186 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQSSPPVLIARLSHAQSK  262 (294)
Q Consensus       186 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~  262 (294)
                      ...+|.+.....     .   ...+...........|+|+++  +++..+.++   .|.+||+.+++...   +...   
T Consensus       307 ~~~Iy~~~~~~g-----~---~~~lt~~g~~~~~~~~SpDG~--~Ia~~s~~~g~~~I~v~d~~~g~~~~---lt~~---  370 (427)
T PRK02889        307 APQIYRMPASGG-----A---AQRVTFTGSYNTSPRISPDGK--LLAYISRVGGAFKLYVQDLATGQVTA---LTDT---  370 (427)
T ss_pred             CcEEEEEECCCC-----c---eEEEecCCCCcCceEECCCCC--EEEEEEccCCcEEEEEEECCCCCeEE---ccCC---
Confidence            666665532110     1   111112222234578999995  666554443   69999998875332   2211   


Q ss_pred             CCeEEEEEccCCCEEEEeccCC
Q 022590          263 SPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       263 ~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                      .......|+|||++|+.++.++
T Consensus       371 ~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        371 TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CCccCceECCCCCEEEEEEecC
Confidence            2235679999999988776544

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.65  E-value=1.1e-14  Score=105.65  Aligned_cols=257  Identities=14%  Similarity=0.171  Sum_probs=163.2

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-----ccceeccc------------CcceEEEEeCCCC-CceE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGH------------GDSINEIRTQPLK-PSLV   69 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~h------------~~~v~~~~~~~~~-~~~l   69 (294)
                      .+-|.++.|.  ..|. +||+|..+|.|.++.-+...     ....++.|            ...|..+.|.++. ...+
T Consensus        25 adiis~vef~--~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   25 ADIISAVEFD--HYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hcceeeEEee--cccc-eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            4567888887  8899 99999999999999754322     22233334            3468899998742 3467


Q ss_pred             EEeeCCCcEEEEEcCCCceEE---------------Eeec------------------cCCCCCceeEEEEecCCCceEE
Q 022590           70 VSASKDESVRLWNVQTGICIL---------------IFAG------------------AGGHRNEVLSVDFHPSDIYRIA  116 (294)
Q Consensus        70 ~s~~~dg~i~vwd~~~~~~~~---------------~~~~------------------~~~~~~~v~~l~~~~~~~~~l~  116 (294)
                      +..+.|.+|++|.+.......               .++.                  ..+|.--|++|.++. +...++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~l  180 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFL  180 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEe
Confidence            777889999999875322111               0000                  126788899999997 777777


Q ss_pred             eeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC-----CCceeeccee---cceEEEeeCCCeEE
Q 022590          117 SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-----SNYVDCNRWL---GDFILSKSVDNEIV  188 (294)
Q Consensus       117 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~---~~~l~~~~~d~~i~  188 (294)
                      ++ .|-.|.+|++.-....                    ..+.....+     ..-|++..|+   .+.|+-.+..|+|+
T Consensus       181 SA-DdLRINLWnlei~d~s--------------------FnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  181 SA-DDLRINLWNLEIIDQS--------------------FNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ec-cceeeeeccccccCCc--------------------eeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            65 4789999998862211                    111122222     2346666675   67888889999999


Q ss_pred             EecCCCCCCCC-----CCCCce--eeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC-Cceeeeeccc--
Q 022590          189 LWEPKMKEQSP-----GEGTAD--ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-PPVLIARLSH--  258 (294)
Q Consensus       189 iwd~~~~~~~~-----~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~--  258 (294)
                      +-|+|....-.     ...+..  ....+..--..|..+.|+++|  +++++-+. -+|++||++-. ++........  
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG--ryilsRDy-ltvk~wD~nme~~pv~t~~vh~~l  316 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG--RYILSRDY-LTVKLWDLNMEAKPVETYPVHEYL  316 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC--cEEEEecc-ceeEEEeccccCCcceEEeehHhH
Confidence            99999542210     000000  011111122467789999999  57776543 67999999543 3322222110  


Q ss_pred             ---------cccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          259 ---------AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       259 ---------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                               ...--.--.++|+-++.+++||+.....++++..
T Consensus       317 r~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~  359 (433)
T KOG1354|consen  317 RSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA  359 (433)
T ss_pred             HHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence                     0000112457899999999999999999999854

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.63  E-value=2.3e-14  Score=101.26  Aligned_cols=113  Identities=28%  Similarity=0.468  Sum_probs=88.8

Q ss_pred             cCceeEEEEEeecCCCceEE-EEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC---CCcEEEEE
Q 022590            7 KEESFYTVSWACNVDGIPFL-VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWN   82 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd   82 (294)
                      .+++|.+++|+  |+|+.++ +.|..++.|.+||++ ++.+..+.  ...++.+.|+| ++++|++|+.   .|.|.+||
T Consensus        58 ~~~~I~~~~Ws--P~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   58 KEGPIHDVAWS--PNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCCceEEEEEC--cCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEE
Confidence            44679999998  8888332 334567899999996 55555554  56788999999 8899998875   36799999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec------CCcEEEEeccc
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM------DNTVKIWSMKE  131 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~------dg~i~~wd~~~  131 (294)
                      +++.+.+....    |. .++.++|+| ++++|+++..      |+.++||+...
T Consensus       132 ~~~~~~i~~~~----~~-~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  132 VRKKKKISTFE----HS-DATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             CCCCEEeeccc----cC-cEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence            99888887765    44 478999999 8888888863      78899999875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.63  E-value=4.4e-12  Score=98.56  Aligned_cols=194  Identities=14%  Similarity=0.059  Sum_probs=122.4

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  104 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  104 (294)
                      ++++-..+|.|.+.|..+.+.+.++......-..+.|+| +++++++++.||.|.++|+.+++.+..+.    -.....+
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~----~G~~~~~   82 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIK----VGGNPRG   82 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEEE
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEe----cCCCcce
Confidence            445666789999999999999999986555445578999 88999999999999999999999999988    4556789


Q ss_pred             EEEecCCCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cc-eEEE
Q 022590          105 VDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILS  180 (294)
Q Consensus       105 l~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~  180 (294)
                      +++++ ++++++++ ..++.+.++|.++.+.........                .........+.++..+  .. ++++
T Consensus        83 i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~----------------~~~~~~~~Rv~aIv~s~~~~~fVv~  145 (369)
T PF02239_consen   83 IAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG----------------MPVDGPESRVAAIVASPGRPEFVVN  145 (369)
T ss_dssp             EEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--E----------------E-TTTS---EEEEEE-SSSSEEEEE
T ss_pred             EEEcC-CCCEEEEEecCCCceeEeccccccceeeccccc----------------ccccccCCCceeEEecCCCCEEEEE
Confidence            99999 77766655 578999999998843221110000                0000022334444332  33 4555


Q ss_pred             eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC
Q 022590          181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  249 (294)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  249 (294)
                      .-..+.|-+.|....+.        ................|+|+++ .++++...++.|-++|..+.+
T Consensus       146 lkd~~~I~vVdy~d~~~--------~~~~~i~~g~~~~D~~~dpdgr-y~~va~~~sn~i~viD~~~~k  205 (369)
T PF02239_consen  146 LKDTGEIWVVDYSDPKN--------LKVTTIKVGRFPHDGGFDPDGR-YFLVAANGSNKIAVIDTKTGK  205 (369)
T ss_dssp             ETTTTEEEEEETTTSSC--------EEEEEEE--TTEEEEEE-TTSS-EEEEEEGGGTEEEEEETTTTE
T ss_pred             EccCCeEEEEEeccccc--------cceeeecccccccccccCcccc-eeeecccccceeEEEeeccce
Confidence            55568888888776531        2222222345567789999985 244555667788888887754

...

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=3.7e-13  Score=107.46  Aligned_cols=214  Identities=12%  Similarity=0.063  Sum_probs=129.1

Q ss_pred             cCceeEEEEEeecCCCceEEEEee---cCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEE-eeCCC--cEEE
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGG---INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVS-ASKDE--SVRL   80 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-~~~dg--~i~v   80 (294)
                      +.+.+...+|+  |||+ .|+..+   .+..|.+|++.+++... +....+.+...+|+| +++.|+. .+.+|  .|.+
T Consensus       197 ~~~~~~~p~wS--PDG~-~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~~  271 (429)
T PRK03629        197 SPQPLMSPAWS--PDGS-KLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYV  271 (429)
T ss_pred             CCCceeeeEEc--CCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEEE
Confidence            44567788887  9998 666543   24579999998875432 222334456789999 7776664 34455  4888


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec-CCcEEEE--eccccccccccceeecCCCCCCCCceeeec
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIW--SMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      ||+.+++......    +...+....|+| +++.|+..+. ++...+|  |+....                        
T Consensus       272 ~d~~tg~~~~lt~----~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~------------------------  322 (429)
T PRK03629        272 MDLASGQIRQVTD----GRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGA------------------------  322 (429)
T ss_pred             EECCCCCEEEccC----CCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCC------------------------
Confidence            9998877654433    445678899999 7776665554 4555555  444311                        


Q ss_pred             eEEeecCCCceeeccee--cceEEEeeCC---CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          158 VFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      ...+...........|+  |++++..+.+   ..|.+||+.+++.          ..+... .......|+|++.  +++
T Consensus       323 ~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----------~~Lt~~-~~~~~p~~SpDG~--~i~  389 (429)
T PRK03629        323 PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----------QVLTDT-FLDETPSIAPNGT--MVI  389 (429)
T ss_pred             eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe----------EEeCCC-CCCCCceECCCCC--EEE
Confidence            11111222233344454  7777665543   3588899876642          111111 1223568999994  666


Q ss_pred             EEcCCCe---EEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590          233 IGNREGK---IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY  272 (294)
Q Consensus       233 ~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~  272 (294)
                      ..+.++.   +.++++....   ...+.  .+.+.+...+|+|
T Consensus       390 ~~s~~~~~~~l~~~~~~G~~---~~~l~--~~~~~~~~p~Wsp  427 (429)
T PRK03629        390 YSSSQGMGSVLNLVSTDGRF---KARLP--ATDGQVKFPAWSP  427 (429)
T ss_pred             EEEcCCCceEEEEEECCCCC---eEECc--cCCCCcCCcccCC
Confidence            6665554   6677775543   23333  4556788888987

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.60  E-value=1.5e-14  Score=115.07  Aligned_cols=247  Identities=13%  Similarity=0.185  Sum_probs=179.0

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~   86 (294)
                      .|-.+.|+++|.-. +-++......-.+|++...   .....+.+|..+|+.+-|+|+....+++++.|..+..||+++.
T Consensus        69 ~vad~qws~h~a~~-~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp  147 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKP-YWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP  147 (1081)
T ss_pred             hhcceecccCCCCc-eeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence            46678999988877 6666666777889998542   3445667899999999999999999999999999999999876


Q ss_pred             c-eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           87 I-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        87 ~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      . .+..+.   .-......++|+-.+++.+| .+..+.|++||++.+                      ..|+..+++|.
T Consensus       148 ~~p~ys~~---~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~g----------------------s~pl~s~K~~v  201 (1081)
T KOG0309|consen  148 HRPFYSTS---SWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKG----------------------STPLCSLKGHV  201 (1081)
T ss_pred             Ccceeeee---cccccCceeeecccCcchhh-hccCCceEEEeccCC----------------------CcceEEecccc
Confidence            4 344444   34556788999985666454 556678999999985                      45677888899


Q ss_pred             Cceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          166 NYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       166 ~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      ..|..+.|+   ...+.+++.|++++.||......        ..........++..-.+.|-+++.++.-.-.+..+.+
T Consensus       202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--------e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~  273 (1081)
T KOG0309|consen  202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--------ESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQ  273 (1081)
T ss_pred             eeeehHHHhhhhhhhhcccCCCCceeeeccccccc--------ccceeccccCcceeccccccCceeEeccccCCeeeee
Confidence            999999997   56789999999999999876532        1112222345677777888877655544444445656


Q ss_pred             EeccCCC--------ceeeeeccccccCCCeEEEEEccCC----------CEEEEeccCCcEEEEecCC
Q 022590          243 WELQSSP--------PVLIARLSHAQSKSPIRQTAMSYDG----------STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       243 ~d~~~~~--------~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++.++..        +..+..+.  +|...|....|-..+          -.|+|=+.|..+++|-+..
T Consensus       274 ~~c~n~d~e~n~~~~~~pVh~F~--GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  274 LRCENSDLEWNVFDLNTPVHTFV--GHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ccccchhhhhccccCCcceeeec--CcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            5554421        12333443  788878777665322          2689999999999998753

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=6.1e-13  Score=106.67  Aligned_cols=215  Identities=13%  Similarity=0.063  Sum_probs=128.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeec---CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCC--cEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDE--SVR   79 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg--~i~   79 (294)
                      .+.+.+.+.+|+  |||+ .|+..+.   +..|.+||+.+++.. .+..+.+...+.+|+| +++.| ++.+.+|  .|.
T Consensus       201 ~~~~~v~~p~wS--pDg~-~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        201 RSAEPILSPAWS--PDGK-KLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSP-DGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             cCCCccccccCC--CCCC-EEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECC-CCCEEEEEEeCCCCceEE
Confidence            455677888887  9998 7776653   346999999877653 3333445556889999 66655 4556665  589


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCCc--EEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      +||+.+++... +.   .+.......+|+| ++..|+.++ .+|.  |.++|+..+.                       
T Consensus       276 ~~d~~~g~~~~-lt---~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~-----------------------  327 (433)
T PRK04922        276 VMDLGSRQLTR-LT---NHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGS-----------------------  327 (433)
T ss_pred             EEECCCCCeEE-Cc---cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCC-----------------------
Confidence            99998877543 33   3555567789999 776666554 4555  5555554421                       


Q ss_pred             ceEEeecCCCceeeccee--cceEEEeeCCC---eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590          157 PVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  231 (294)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  231 (294)
                       ...+..+.......+|+  |++++..+.++   .|.+||+.+++.          ..+.. ........|+|++.  ++
T Consensus       328 -~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----------~~Lt~-~~~~~~p~~spdG~--~i  393 (433)
T PRK04922        328 -AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----------RTLTP-GSLDESPSFAPNGS--MV  393 (433)
T ss_pred             -eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe----------EECCC-CCCCCCceECCCCC--EE
Confidence             01111112223344554  77777655433   699999876642          11111 11233568999995  44


Q ss_pred             EEEcC---CCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590          232 AIGNR---EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY  272 (294)
Q Consensus       232 ~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~  272 (294)
                      +..+.   .+.|.++++....   ...+.  .+.+.+...+|+|
T Consensus       394 ~~~s~~~g~~~L~~~~~~g~~---~~~l~--~~~g~~~~p~wsp  432 (433)
T PRK04922        394 LYATREGGRGVLAAVSTDGRV---RQRLV--SADGEVREPAWSP  432 (433)
T ss_pred             EEEEecCCceEEEEEECCCCc---eEEcc--cCCCCCCCCccCC
Confidence            44433   3457777775542   23332  2234567778876

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.60  E-value=3.6e-12  Score=102.42  Aligned_cols=203  Identities=16%  Similarity=0.122  Sum_probs=126.4

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---CcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  109 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~  109 (294)
                      ..|.++|.+... .+.+..+...+...+|+| ++++|+.+..+   ..|.+||+.+++......    +...+.+++|+|
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~----~~~~~~~~~~sp  243 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVAS----FPGMNGAPAFSP  243 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeec----CCCCccceEECC
Confidence            368888875443 455656777899999999 88888776643   479999998886544332    556677899999


Q ss_pred             CCCceE-EeeecCC--cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-
Q 022590          110 SDIYRI-ASCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-  183 (294)
Q Consensus       110 ~~~~~l-~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-  183 (294)
                       ++..| ++.+.++  .|++||+.+...                        ..+..+........|+  ++.|+..+. 
T Consensus       244 -Dg~~l~~~~~~~~~~~i~~~d~~~~~~------------------------~~l~~~~~~~~~~~~s~dg~~l~~~s~~  298 (417)
T TIGR02800       244 -DGSKLAVSLSKDGNPDIYVMDLDGKQL------------------------TRLTNGPGIDTEPSWSPDGKSIAFTSDR  298 (417)
T ss_pred             -CCCEEEEEECCCCCccEEEEECCCCCE------------------------EECCCCCCCCCCEEECCCCCEEEEEECC
Confidence             66545 4555554  488888776321                        1111222222233443  666665544 


Q ss_pred             CC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC---eEEEEeccCCCceeeeeccc
Q 022590          184 DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG---KIFVWELQSSPPVLIARLSH  258 (294)
Q Consensus       184 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~  258 (294)
                      ++  .|.++|+.+++          ...+...........|+|+++  +++....++   .|.+||+.++...   .+..
T Consensus       299 ~g~~~iy~~d~~~~~----------~~~l~~~~~~~~~~~~spdg~--~i~~~~~~~~~~~i~~~d~~~~~~~---~l~~  363 (417)
T TIGR02800       299 GGSPQIYMMDADGGE----------VRRLTFRGGYNASPSWSPDGD--LIAFVHREGGGFNIAVMDLDGGGER---VLTD  363 (417)
T ss_pred             CCCceEEEEECCCCC----------EEEeecCCCCccCeEECCCCC--EEEEEEccCCceEEEEEeCCCCCeE---EccC
Confidence            33  57777876543          222333344556788999984  666666554   7888998875422   2221


Q ss_pred             cccCCCeEEEEEccCCCEEEEeccCC
Q 022590          259 AQSKSPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       259 ~~~~~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                      .   .......|+|+|++|+..+.++
T Consensus       364 ~---~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       364 T---GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             C---CCCCCceECCCCCEEEEEEeCC
Confidence            1   1234568999999888876654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.59  E-value=4.9e-13  Score=94.54  Aligned_cols=147  Identities=17%  Similarity=0.316  Sum_probs=99.1

Q ss_pred             EEEEeecCCCceEEEEeec---------CCeEEEEEcCC-ccccceecc-cCcceEEEEeCCCCCceEEE--eeCCCcEE
Q 022590           13 TVSWACNVDGIPFLVAGGI---------NGIIRVIDVSN-EKLHKSFVG-HGDSINEIRTQPLKPSLVVS--ASKDESVR   79 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s--~~~dg~i~   79 (294)
                      .+.|+  |+|+.+++....         -|...+|-++. +.....+.- ..++|.+++|+| +++.|+.  |..++.|.
T Consensus        10 ~~~W~--~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen   10 KLHWQ--PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             EEEec--ccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccE
Confidence            34554  899844444441         24455665532 334444443 345799999999 6666543  44678999


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC---CcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      +||++ ++.+..+.     ...++.+.|+| ++++|++++.+   |.|.+||+++.                       .
T Consensus        87 lyd~~-~~~i~~~~-----~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~-----------------------~  136 (194)
T PF08662_consen   87 LYDVK-GKKIFSFG-----TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKK-----------------------K  136 (194)
T ss_pred             EEcCc-ccEeEeec-----CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCC-----------------------E
Confidence            99996 66665553     45778999999 88888888754   67999999972                       2


Q ss_pred             ceEEeecCCCceeeccee--cceEEEeeC------CCeEEEecCCC
Q 022590          157 PVFIASVHSNYVDCNRWL--GDFILSKSV------DNEIVLWEPKM  194 (294)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~------d~~i~iwd~~~  194 (294)
                      .+.... | ..+..+.|+  |++|+++..      |..++||+...
T Consensus       137 ~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  137 KISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             Eeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence            222222 3 346788887  889998875      67889999863

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.6e-12  Score=104.43  Aligned_cols=215  Identities=11%  Similarity=0.039  Sum_probs=132.4

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeec---CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCCc--EE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDES--VR   79 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~--i~   79 (294)
                      .|.+.+...+|+  |||+ .|+..+.   +..|.+||+.+++. ..+..+.+.+...+|+| +++.| ++.+.++.  |.
T Consensus       199 ~~~~~v~~p~wS--pDG~-~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        199 DGSSLVLTPRFS--PNRQ-EITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             cCCCCeEeeEEC--CCCC-EEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECC-CCCEEEEEEecCCCceEE
Confidence            566788889998  9998 6766553   46899999988765 34555667788999999 66655 56666665  66


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCC--cEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      +||+.+++... +.   .+........|+| ++..|+..+ .+|  .|.++|+....                       
T Consensus       274 ~~d~~~~~~~~-Lt---~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~-----------------------  325 (435)
T PRK05137        274 TMDLRSGTTTR-LT---DSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSN-----------------------  325 (435)
T ss_pred             EEECCCCceEE-cc---CCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCC-----------------------
Confidence            77887776543 33   3555677899999 777666655 344  56777765421                       


Q ss_pred             ceEEeecCCCceeeccee--cceEEEeeCC---CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590          157 PVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  231 (294)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  231 (294)
                       ...+..+...+....|+  |+.++....+   ..|.+||+..+..          ..+.. ...+....|+|+++  .|
T Consensus       326 -~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----------~~lt~-~~~~~~p~~spDG~--~i  391 (435)
T PRK05137        326 -PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE----------RILTS-GFLVEGPTWAPNGR--VI  391 (435)
T ss_pred             -eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce----------EeccC-CCCCCCCeECCCCC--EE
Confidence             11111223334445564  7777765543   3688888754421          11111 12355678999995  44


Q ss_pred             EE-EcCC-----CeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590          232 AI-GNRE-----GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD  273 (294)
Q Consensus       232 ~~-~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (294)
                      +. ....     ..++++|+...+.   ..+..   .+.+...+|+|-
T Consensus       392 ~~~~~~~~~~~~~~L~~~dl~g~~~---~~l~~---~~~~~~p~Wsp~  433 (435)
T PRK05137        392 MFFRQTPGSGGAPKLYTVDLTGRNE---REVPT---PGDASDPAWSPL  433 (435)
T ss_pred             EEEEccCCCCCcceEEEEECCCCce---EEccC---CCCccCcccCCC
Confidence            43 3322     3578888876643   22221   233566778763

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.5e-14  Score=108.32  Aligned_cols=215  Identities=19%  Similarity=0.186  Sum_probs=160.6

Q ss_pred             cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCC-CceEEeeecCCcE
Q 022590           46 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTV  124 (294)
Q Consensus        46 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i  124 (294)
                      ...+..|.+.|+.+.|.. .+..|++|+.|..|.+||...++....+..  +|...|..-.|-|.. ...+++++.||.+
T Consensus       135 ~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S--GH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFES--GHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCccccccc--ccccchhhhhccCCCCCcCceeccccCce
Confidence            456778999999999999 899999999999999999999998888776  899999998998853 4679999999999


Q ss_pred             EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCC
Q 022590          125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGE  201 (294)
Q Consensus       125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~  201 (294)
                      ++=.+.....                    ......+..|.++|.-++..   ...|.+++.|+.+.-+|++.....   
T Consensus       212 r~s~i~~t~~--------------------~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa---  268 (559)
T KOG1334|consen  212 RVSEILETGY--------------------VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA---  268 (559)
T ss_pred             eeeeeccccc--------------------eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc---
Confidence            9877654211                    12234556678887777664   778999999999999999877532   


Q ss_pred             CCceeeeeeecCCC---CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeee----c-c---ccccCCCeEEEEE
Q 022590          202 GTADILQKYPVPEC---DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR----L-S---HAQSKSPIRQTAM  270 (294)
Q Consensus       202 ~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~-~---~~~~~~~v~~~~~  270 (294)
                         ..+.....+..   ....++..|... ..+++|+.|-.+++||.+.........    + +   .......|++++|
T Consensus       269 ---~~~~cr~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y  344 (559)
T KOG1334|consen  269 ---EKFVCREADEKERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY  344 (559)
T ss_pred             ---ceeeeeccCCccceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe
Confidence               12222222222   567788888876 589999999999999987643221111    1 0   0123356999999


Q ss_pred             ccCCCEEEEeccCCcEEEEe
Q 022590          271 SYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       271 s~~~~~l~s~~~dg~i~vw~  290 (294)
                      +.++.-|.++..|-.|+++.
T Consensus       345 sh~~sElLaSYnDe~IYLF~  364 (559)
T KOG1334|consen  345 SHDGSELLASYNDEDIYLFN  364 (559)
T ss_pred             cCCccceeeeecccceEEec
Confidence            98877777777788899884

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.59  E-value=1.6e-13  Score=99.70  Aligned_cols=262  Identities=16%  Similarity=0.240  Sum_probs=163.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc-----------------------------------cee-
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH-----------------------------------KSF-   49 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------------------------------~~~-   49 (294)
                      +-+++|+.+.|....+.. .++..+.|.+|++|.+......                                   +.+ 
T Consensus        82 eieEKinkIrw~~~~n~a-~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~a  160 (433)
T KOG1354|consen   82 EIEEKINKIRWLDDGNLA-EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYA  160 (433)
T ss_pred             hhhhhhhhceecCCCCcc-EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecc
Confidence            456789999998544444 7778888999999987542110                                   111 


Q ss_pred             cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC-----CceeEEEEecCCCceEEeeecCCcE
Q 022590           50 VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-----NEVLSVDFHPSDIYRIASCGMDNTV  124 (294)
Q Consensus        50 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----~~v~~l~~~~~~~~~l~~~~~dg~i  124 (294)
                      .+|+-.|+++.++. +...++++. |=.|.+|+++--..-..+...+++.     .-|++..|+|...+.|+-.+..|+|
T Consensus       161 NaHtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI  238 (433)
T KOG1354|consen  161 NAHTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI  238 (433)
T ss_pred             ccceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence            35788899999998 777777764 6789999987544333333222333     4589999999888999999999999


Q ss_pred             EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCC
Q 022590          125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG  202 (294)
Q Consensus       125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~  202 (294)
                      ++.|+|.........-.+.....       .....-+..--..|..+.|+  |+++++-. --+|++||+.....     
T Consensus       239 rLcDmR~~aLCd~hsKlfEeped-------p~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~-----  305 (433)
T KOG1354|consen  239 RLCDMRQSALCDAHSKLFEEPED-------PSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAK-----  305 (433)
T ss_pred             EEeechhhhhhcchhhhhccccC-------CcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCC-----
Confidence            99999963322211111110000       00111122233567778886  77887743 36899999976543     


Q ss_pred             CceeeeeeecCCC---------------CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee-------------
Q 022590          203 TADILQKYPVPEC---------------DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-------------  254 (294)
Q Consensus       203 ~~~~~~~~~~~~~---------------~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------  254 (294)
                         ++..++.|..               .-..++|+-++  .++++|+..+..++|++..+......             
T Consensus       306 ---pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~--~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~  380 (433)
T KOG1354|consen  306 ---PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND--SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV  380 (433)
T ss_pred             ---cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc--ceEecccccceEEEecCCCCcceeecccccccCCccccc
Confidence               3444443321               12235666665  68999999999999996544211100             


Q ss_pred             -ecc---cccc-------------CCCeEEEEEccCCCEEEEeccCCcEEEE
Q 022590          255 -RLS---HAQS-------------KSPIRQTAMSYDGSTILSCCEDGAIWRW  289 (294)
Q Consensus       255 -~~~---~~~~-------------~~~v~~~~~s~~~~~l~s~~~dg~i~vw  289 (294)
                       +..   ..+.             ...+...+|+|..+.+|.+..+. +++|
T Consensus       381 ~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif  431 (433)
T KOG1354|consen  381 LKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF  431 (433)
T ss_pred             ccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence             000   0000             12356678999999998886554 6665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.58  E-value=9.9e-13  Score=102.03  Aligned_cols=190  Identities=16%  Similarity=0.139  Sum_probs=147.6

Q ss_pred             CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEe------c-------------CCCceEEeeecCCcEE
Q 022590           65 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH------P-------------SDIYRIASCGMDNTVK  125 (294)
Q Consensus        65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~------~-------------~~~~~l~~~~~dg~i~  125 (294)
                      ...++|....||.+++|+...++....|.....-.+...+..|.      |             .+...++-|...|.|.
T Consensus         4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~   83 (541)
T KOG4547|consen    4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL   83 (541)
T ss_pred             hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence            66789999999999999999998888777544444555666652      1             2445788888999999


Q ss_pred             EEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCC
Q 022590          126 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT  203 (294)
Q Consensus       126 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  203 (294)
                      +|++..++.                     ........|.+.|.++.++  -..|.+++.|+.+..|+.....       
T Consensus        84 ~ys~~~g~i---------------------t~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-------  135 (541)
T KOG4547|consen   84 LYSVAGGEI---------------------TAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-------  135 (541)
T ss_pred             EEEecCCeE---------------------EEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-------
Confidence            999987431                     1233446799999999987  5589999999999999998664       


Q ss_pred             ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC-----CCEEE
Q 022590          204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-----GSTIL  278 (294)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~  278 (294)
                        .++.+......+.+++.+||+  ..+++++  +.|++||+++.+  ....+.  +|.++|++++|..+     |.+++
T Consensus       136 --~~~~~~~~~~~~~sl~is~D~--~~l~~as--~~ik~~~~~~ke--vv~~ft--gh~s~v~t~~f~~~~~g~~G~~vL  205 (541)
T KOG4547|consen  136 --IIRIWKEQKPLVSSLCISPDG--KILLTAS--RQIKVLDIETKE--VVITFT--GHGSPVRTLSFTTLIDGIIGKYVL  205 (541)
T ss_pred             --eeeeeccCCCccceEEEcCCC--CEEEecc--ceEEEEEccCce--EEEEec--CCCcceEEEEEEEeccccccceee
Confidence              677777777888999999998  4777775  689999999986  444554  99999999999877     66666


Q ss_pred             E-eccCCcEEEEecC
Q 022590          279 S-CCEDGAIWRWDAI  292 (294)
Q Consensus       279 s-~~~dg~i~vw~~~  292 (294)
                      + ...+..+.+|-++
T Consensus       206 ssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  206 SSAAAERGITVWVVE  220 (541)
T ss_pred             eccccccceeEEEEE
Confidence            5 4556668888664

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.58  E-value=1.6e-13  Score=112.84  Aligned_cols=187  Identities=16%  Similarity=0.207  Sum_probs=146.1

Q ss_pred             CCceEEEEeecCCeEEEEEcCCccccceecccCcc----eEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC
Q 022590           21 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS----INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG   96 (294)
Q Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~   96 (294)
                      +.. .++.++.+..+.+||...+.....+......    ..-+-+++ +.-++++|+.-+.|.+|+....+....+.   
T Consensus        98 e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~---  172 (967)
T KOG0974|consen   98 ENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLK---  172 (967)
T ss_pred             hcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceec---
Confidence            344 7888888999999999888776666533221    12233455 66789999999999999987433333345   


Q ss_pred             CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecc
Q 022590           97 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD  176 (294)
Q Consensus        97 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  176 (294)
                      +|.+.|.++.|+. ++.++++.+.|.++++|++.+.+                      .......+|+..+..+.|..+
T Consensus       173 GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~----------------------~~~~~~fgHsaRvw~~~~~~n  229 (967)
T KOG0974|consen  173 GHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSRE----------------------VLGCTGFGHSARVWACCFLPN  229 (967)
T ss_pred             ccCCceEEEEEcc-CCcEEEEEecCcceeeeeccccc----------------------ccCcccccccceeEEEEeccc
Confidence            7999999999998 99999999999999999999832                      122466789999999999988


Q ss_pred             eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC-CCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          177 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       177 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      .+++++.|.+.++|+....+          +..+..|. ..+..++..++.  ..+++++.||.+++|++..
T Consensus       230 ~i~t~gedctcrvW~~~~~~----------l~~y~~h~g~~iw~~~~~~~~--~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  230 RIITVGEDCTCRVWGVNGTQ----------LEVYDEHSGKGIWKIAVPIGV--IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eeEEeccceEEEEEecccce----------ehhhhhhhhcceeEEEEcCCc--eEEEeeccCcchhhhhhhc
Confidence            99999999999999765432          33444443 568888888887  5899999999999999865

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.56  E-value=2.8e-10  Score=88.65  Aligned_cols=245  Identities=15%  Similarity=0.109  Sum_probs=146.4

Q ss_pred             cCCCceEEEEeec----CCeEEEEEcCCc--c--ccceecccCcceEEEEeCCCCCceEEEee-CCCcEEEEEcCC-Cce
Q 022590           19 NVDGIPFLVAGGI----NGIIRVIDVSNE--K--LHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQT-GIC   88 (294)
Q Consensus        19 ~~~~~~~l~~~~~----dg~i~iw~~~~~--~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~-~~~   88 (294)
                      +|+++ +|.+...    +|.|..|.+...  +  .+.+..........++++| ++++|+++. .+|.|.++++.. +..
T Consensus        45 ~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l  122 (345)
T PF10282_consen   45 SPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSL  122 (345)
T ss_dssp             -TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEE
T ss_pred             EeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCccc
Confidence            48888 7777765    579999988764  2  2333333345567799999 777777776 589999999986 333


Q ss_pred             EEEeecc----------CCCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           89 ILIFAGA----------GGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        89 ~~~~~~~----------~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      .......          ........++.|+| +++++++.. ....|.+|++........                  ..
T Consensus       123 ~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~------------------~~  183 (345)
T PF10282_consen  123 GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLT------------------PV  183 (345)
T ss_dssp             EEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEE------------------EE
T ss_pred             ceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEE------------------Ee
Confidence            2221100          01234578999999 766665543 345799999986321110                  00


Q ss_pred             eEEeecCCCceeeccee--cceEEE-eeCCCeEEEecCCCCCCCCCCCCceeeeeeecC------CCCeeEEEEcccCCc
Q 022590          158 VFIASVHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP------ECDIWFIKFSCDFHY  228 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~  228 (294)
                      ..........-+.+.|+  ++++++ ...++.|.++++.....     ....++.....      ......+.++|+++ 
T Consensus       184 ~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~-  257 (345)
T PF10282_consen  184 DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG-----SLTEIQTISTLPEGFTGENAPAEIAISPDGR-  257 (345)
T ss_dssp             EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-----EEEEEEEEESCETTSCSSSSEEEEEE-TTSS-
T ss_pred             eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC-----ceeEEEEeeeccccccccCCceeEEEecCCC-
Confidence            11111233445566665  555544 45678899998873221     11222222211      12577899999996 


Q ss_pred             ceEEEEcCCCeEEEEeccC--CCceeeeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEecC
Q 022590          229 NAAAIGNREGKIFVWELQS--SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAI  292 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~  292 (294)
                      .+.++....+.|.+|++..  ++........  ......+.++++|+|++|+++. .++.|.+|++.
T Consensus       258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~--~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVP--TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             EEEEEECTTTEEEEEEECTTTTTEEEEEEEE--ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEeccCCEEEEEEEecCCCceEEEEEEe--CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            2444455678899999943  3433333333  2234579999999999999876 56689999875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.56  E-value=1.8e-12  Score=103.74  Aligned_cols=218  Identities=13%  Similarity=0.096  Sum_probs=127.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecC---CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEE-EeeCCCcEEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLW   81 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~i~vw   81 (294)
                      .+.+.+.+.+|+  |||+ .|+..+.+   ..|.+||+.+++... +....+.+...+|+| +++.|+ +.+.+|...+|
T Consensus       193 ~~~~~v~~p~wS--PDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy  267 (427)
T PRK02889        193 SSPEPIISPAWS--PDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIY  267 (427)
T ss_pred             cCCCCcccceEc--CCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEEEEEEccCCCceEE
Confidence            456778888897  9998 67666532   469999998886533 333445667899999 666555 66778887777


Q ss_pred             Ec--CCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           82 NV--QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        82 d~--~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      .+  ..+. ...+.   .+........|+| ++..|+..+ .+|...+|.+.....                    .  .
T Consensus       268 ~~d~~~~~-~~~lt---~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g--------------------~--~  320 (427)
T PRK02889        268 TVNADGSG-LRRLT---QSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGG--------------------A--A  320 (427)
T ss_pred             EEECCCCC-cEECC---CCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCC--------------------c--e
Confidence            65  3333 34443   3555567788999 776665544 456777776643110                    0  0


Q ss_pred             EEeecCCCceeecce--ecceEEEeeCCC---eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590          159 FIASVHSNYVDCNRW--LGDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~--~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      ..+...........|  +|++++..+.++   .|.+||+.+++.          ..+.. ........|+|+++  .|+.
T Consensus       321 ~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----------~~lt~-~~~~~~p~~spdg~--~l~~  387 (427)
T PRK02889        321 QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----------TALTD-TTRDESPSFAPNGR--YILY  387 (427)
T ss_pred             EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----------EEccC-CCCccCceECCCCC--EEEE
Confidence            001111112223344  488887766554   699999987642          11111 12234678999995  4444


Q ss_pred             Ec-CCCe--EEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590          234 GN-REGK--IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD  273 (294)
Q Consensus       234 ~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (294)
                      .+ ..|.  +.+.++...   ....+.  .+.+.+...+|+|-
T Consensus       388 ~~~~~g~~~l~~~~~~g~---~~~~l~--~~~g~~~~p~wsp~  425 (427)
T PRK02889        388 ATQQGGRSVLAAVSSDGR---IKQRLS--VQGGDVREPSWGPF  425 (427)
T ss_pred             EEecCCCEEEEEEECCCC---ceEEee--cCCCCCCCCccCCC
Confidence            43 3433  555555332   222222  23355677788874

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.56  E-value=5.4e-14  Score=121.67  Aligned_cols=190  Identities=13%  Similarity=0.312  Sum_probs=154.4

Q ss_pred             cCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           52 HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        52 h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      +-..|.++.-+| ...+.++|+.||.+++|....++.+..+...  -...|+.+.|+. .|+.+..+..||.+.+|....
T Consensus      2207 ~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~p 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--GNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQASP 2282 (2439)
T ss_pred             ccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeecc--Ccchhhhhhhcc-cCCceeeeccCCceeecccCC
Confidence            445678888888 6778999999999999999999999888864  338899999998 777799999999999999883


Q ss_pred             cccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEee---CCCeEEEecCCCCCCCCCCCCceeee
Q 022590          132 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS---VDNEIVLWEPKMKEQSPGEGTADILQ  208 (294)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~  208 (294)
                                              .+......|........|-+..+++++   .++.+.+||.....      ...++.
T Consensus      2283 ------------------------k~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~------~~s~v~ 2332 (2439)
T KOG1064|consen 2283 ------------------------KPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPP------MNSLVH 2332 (2439)
T ss_pred             ------------------------cceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCc------ccceee
Confidence                                    467788899999999999888888765   46789999986543      122333


Q ss_pred             eeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEE
Q 022590          209 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR  288 (294)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v  288 (294)
                        ..|...++++++.|..  ..|++|+.+|.|++||++..+.  ...++       .    +. ...++++|+..|.++|
T Consensus      2333 --~~H~~gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql--~h~~~-------~----~~-~~~~f~~~ss~g~ikI 2394 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQL--RHTFQ-------A----LD-TREYFVTGSSEGNIKI 2394 (2439)
T ss_pred             --eecCCCceEEEEcCcc--eEEEecCCcCcEEEeehHHHHH--HHHhh-------h----hh-hhheeeccCcccceEE
Confidence              6788899999999998  6999999999999999987652  22221       1    44 5679999999999999


Q ss_pred             EecCC
Q 022590          289 WDAIP  293 (294)
Q Consensus       289 w~~~~  293 (294)
                      |++..
T Consensus      2395 w~~s~ 2399 (2439)
T KOG1064|consen 2395 WRLSE 2399 (2439)
T ss_pred             EEccc
Confidence            99864

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.55  E-value=7e-12  Score=97.43  Aligned_cols=190  Identities=19%  Similarity=0.204  Sum_probs=147.2

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecc---cCcceEEEEe------CC-------------CCCceEEEeeCCCc
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIRT------QP-------------LKPSLVVSASKDES   77 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---h~~~v~~~~~------~~-------------~~~~~l~s~~~dg~   77 (294)
                      |... ++|....||.+++|+..+++....+..   -.+..++..|      +|             .+...++-|...|.
T Consensus         3 ~~~~-~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    3 PALD-YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             chhh-eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            4455 999999999999999999887766642   1233444444      22             14457888999999


Q ss_pred             EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      |.+|++..++....+..- .|.+.|.++.++. +-..|.+++.|+.+..|+...                       ...
T Consensus        82 v~~ys~~~g~it~~~st~-~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~-----------------------~~~  136 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTD-KHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKE-----------------------KVI  136 (541)
T ss_pred             EEEEEecCCeEEEEEecC-CCCCcceeeeccc-ccCceEecCCceeEEEEeccc-----------------------cee
Confidence            999999999988887632 6999999999987 777899999999999999998                       444


Q ss_pred             eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEccc-----CCcce
Q 022590          158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD-----FHYNA  230 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~  230 (294)
                      .......+..+.+++..  +..+++++  +.|++||+++.+         .+..+++|..++.++.|...     |+ .+
T Consensus       137 ~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke---------vv~~ftgh~s~v~t~~f~~~~~g~~G~-~v  204 (541)
T KOG4547|consen  137 IRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE---------VVITFTGHGSPVRTLSFTTLIDGIIGK-YV  204 (541)
T ss_pred             eeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCce---------EEEEecCCCcceEEEEEEEeccccccc-ee
Confidence            55666666777777776  45777765  689999999776         79999999999999999887     43 34


Q ss_pred             EEEEcCCCeEEEEeccC
Q 022590          231 AAIGNREGKIFVWELQS  247 (294)
Q Consensus       231 l~~~~~dg~i~i~d~~~  247 (294)
                      |.+...+..+.+|-+..
T Consensus       205 Lssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  205 LSSAAAERGITVWVVEK  221 (541)
T ss_pred             eeccccccceeEEEEEc
Confidence            55555666788887765

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=1.1e-12  Score=108.16  Aligned_cols=194  Identities=15%  Similarity=0.130  Sum_probs=149.4

Q ss_pred             cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCce-----eEEEEecCCCceEEeeecCCcEEEEe
Q 022590           54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV-----LSVDFHPSDIYRIASCGMDNTVKIWS  128 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v-----~~l~~~~~~~~~l~~~~~dg~i~~wd  128 (294)
                      +.|....+.. +...++.++.+..+.+||...+.....+.    +....     .-+-+++ +.-++++|+.-+.|.+|+
T Consensus        88 ~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~----~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~  161 (967)
T KOG0974|consen   88 DWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQ----SDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWK  161 (967)
T ss_pred             ccccccchhh-hcceEEEEEcCceEEEEecccCceehhcC----CCceEEEEeEEEEeccC-cEEEEEeccccccEEEEe
Confidence            3444444555 56788888999999999998877766665    33322     1223455 677899999999999999


Q ss_pred             ccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCcee
Q 022590          129 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI  206 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  206 (294)
                      ....                      ..+ ..+.+|++.|..+.+  +|.++++.++|+.+|+|++.+.+..        
T Consensus       162 ~~~d----------------------n~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~--------  210 (967)
T KOG0974|consen  162 PHED----------------------NKP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL--------  210 (967)
T ss_pred             cccc----------------------CCc-ceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc--------
Confidence            8841                      122 278899999999999  4999999999999999999987642        


Q ss_pred             eeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcE
Q 022590          207 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI  286 (294)
Q Consensus       207 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  286 (294)
                      ....-.|..+++.+.|.|+    .++++++|-+.++|+.+..+..   .+. ......|..++..++...++|++.||.+
T Consensus       211 ~~~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~~~~~~l~---~y~-~h~g~~iw~~~~~~~~~~~vT~g~Ds~l  282 (967)
T KOG0974|consen  211 GCTGFGHSARVWACCFLPN----RIITVGEDCTCRVWGVNGTQLE---VYD-EHSGKGIWKIAVPIGVIIKVTGGNDSTL  282 (967)
T ss_pred             CcccccccceeEEEEeccc----eeEEeccceEEEEEecccceeh---hhh-hhhhcceeEEEEcCCceEEEeeccCcch
Confidence            2344567889999999987    5999999999999977665422   222 1223569999999999999999999999


Q ss_pred             EEEecC
Q 022590          287 WRWDAI  292 (294)
Q Consensus       287 ~vw~~~  292 (294)
                      ++|++.
T Consensus       283 k~~~l~  288 (967)
T KOG0974|consen  283 KLWDLN  288 (967)
T ss_pred             hhhhhh
Confidence            999975

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.52  E-value=1.1e-12  Score=93.44  Aligned_cols=118  Identities=16%  Similarity=0.246  Sum_probs=95.6

Q ss_pred             EEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590           13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL   90 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~   90 (294)
                      +++..+++.+. -++++-.+|.+.+-+.....  .++.++.|.-+.....|+..+.+++++|+.|+.+..||++..+ ..
T Consensus       124 ~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~  201 (339)
T KOG0280|consen  124 ALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TF  201 (339)
T ss_pred             eeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ce
Confidence            44444447777 79999999999966655543  3458899999999999998888999999999999999998433 22


Q ss_pred             EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccc
Q 022590           91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  132 (294)
Q Consensus        91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~  132 (294)
                      .+...+-|...|.+|.-+|..+.++++|+.|-.|++||.|..
T Consensus       202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm  243 (339)
T KOG0280|consen  202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM  243 (339)
T ss_pred             eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence            333333699999999999988999999999999999999973

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.50  E-value=2.3e-12  Score=93.83  Aligned_cols=221  Identities=15%  Similarity=0.226  Sum_probs=155.1

Q ss_pred             cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc-CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC
Q 022590           44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV-QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN  122 (294)
Q Consensus        44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg  122 (294)
                      ..++.++||.+.|++...-| ...-+++.+.|.+++||-- +.++.-..+..  ....+++++.+.+ +...|++|-.+|
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~-e~~~L~vg~~ng   90 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVS-ESRRLYVGQDNG   90 (404)
T ss_pred             hhhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeec-cceEEEEEEecc
Confidence            45667889999999988888 7778999999999999954 34554444432  2456899999998 888899999999


Q ss_pred             cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCC--
Q 022590          123 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS--  198 (294)
Q Consensus       123 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~--  198 (294)
                      ++.-+.+...-..                   .........|...+..+.|+  ..++++.+.|..+.---.+.+...  
T Consensus        91 tvtefs~sedfnk-------------------m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~  151 (404)
T KOG1409|consen   91 TVTEFALSEDFNK-------------------MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGG  151 (404)
T ss_pred             eEEEEEhhhhhhh-------------------cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccc
Confidence            9998877651110                   11122334455555555554  444555544443322222111110  


Q ss_pred             ------------------------------CCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590          199 ------------------------------PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       199 ------------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                                                    .......++..+..+...+.+++|.+..  ..|.+|..|..+.+||+-..
T Consensus       152 Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~--~~LfSg~~d~~vi~wdigg~  229 (404)
T KOG1409|consen  152 YNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ--RLLFSGASDHSVIMWDIGGR  229 (404)
T ss_pred             eEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC--cEEEeccccCceEEEeccCC
Confidence                                          0011334667788888999999999988  69999999999999999776


Q ss_pred             CceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +.. ...  ..+|...|..+...+--+.|++++.||.|-+|+.+
T Consensus       230 ~g~-~~e--l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  230 KGT-AYE--LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             cce-eee--eccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            432 222  23777889999998888999999999999999986

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.2e-12  Score=100.04  Aligned_cols=189  Identities=13%  Similarity=0.222  Sum_probs=140.0

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC---
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG---   96 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---   96 (294)
                      |... +++.| ....|+=++++.|+.+..+....+.++++..++ ...+|++|+.+|.|..||.+....+..+....   
T Consensus       144 ~scD-ly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~  220 (703)
T KOG2321|consen  144 PSCD-LYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN  220 (703)
T ss_pred             CCcc-EEEee-cCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccC
Confidence            4444 44444 445788889999999999988889999999999 77899999999999999999877666654311   


Q ss_pred             CCCC-----ceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE-EeecCCCceee
Q 022590           97 GHRN-----EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSNYVDC  170 (294)
Q Consensus        97 ~~~~-----~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~  170 (294)
                      .|.+     .|+++.|+. ++-.+++|..+|.+.+||++..                       .|+. .-....-+|..
T Consensus       221 s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~-----------------------~pl~~kdh~~e~pi~~  276 (703)
T KOG2321|consen  221 SHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRAS-----------------------KPLLVKDHGYELPIKK  276 (703)
T ss_pred             CCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccC-----------------------CceeecccCCccceee
Confidence            2333     399999996 7999999999999999999983                       2322 22334456777


Q ss_pred             ccee----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          171 NRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       171 ~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      +.|.    ++.+++ .....++|||-.+++.         ..... +...++.+++-|++  .+++++-+++.+..|=+.
T Consensus       277 l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~---------~asiE-pt~~lND~C~~p~s--Gm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  277 LDWQDTDQQNKVVS-MDKRILKIWDECTGKP---------MASIE-PTSDLNDFCFVPGS--GMFFTANESSKMHTYYIP  343 (703)
T ss_pred             ecccccCCCceEEe-cchHHhhhcccccCCc---------eeecc-ccCCcCceeeecCC--ceEEEecCCCcceeEEcc
Confidence            7774    334444 5567899999998863         22222 34558888999988  588889888888887765


Q ss_pred             CC
Q 022590          247 SS  248 (294)
Q Consensus       247 ~~  248 (294)
                      ..
T Consensus       344 ~L  345 (703)
T KOG2321|consen  344 SL  345 (703)
T ss_pred             cc
Confidence            53

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=7.2e-11  Score=95.07  Aligned_cols=209  Identities=12%  Similarity=0.104  Sum_probs=123.5

Q ss_pred             eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC
Q 022590           34 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  110 (294)
Q Consensus        34 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~  110 (294)
                      .|.++|.+.+. .+.+..+...+...+|+| +++.|+..+.+   ..|.+||+.+++......    ..+.+....|+| 
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~----~~g~~~~~~~Sp-  252 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRREQITN----FEGLNGAPAWSP-  252 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEEEccC----CCCCcCCeEECC-
Confidence            47777876544 455556778899999999 77777665543   368899998886544322    334456789999 


Q ss_pred             CCceEE-eeecCC--cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-C
Q 022590          111 DIYRIA-SCGMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-D  184 (294)
Q Consensus       111 ~~~~l~-~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d  184 (294)
                      ++..|+ +...+|  .|.++|+.+..                        ...+..+........|+  ++.++..+. +
T Consensus       253 DG~~la~~~~~~g~~~Iy~~d~~~~~------------------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~  308 (430)
T PRK00178        253 DGSKLAFVLSKDGNPEIYVMDLASRQ------------------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRG  308 (430)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCC------------------------eEEcccCCCCcCCeEECCCCCEEEEEECCC
Confidence            666555 555555  57777887632                        11122233333444554  666655443 3


Q ss_pred             C--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc-CCC--eEEEEeccCCCceeeeecccc
Q 022590          185 N--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REG--KIFVWELQSSPPVLIARLSHA  259 (294)
Q Consensus       185 ~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~  259 (294)
                      +  .|.++|+.+++.          ..+...........|+|+++  .++... .++  .|.++|+.+++....   ...
T Consensus       309 g~~~iy~~d~~~g~~----------~~lt~~~~~~~~~~~Spdg~--~i~~~~~~~~~~~l~~~dl~tg~~~~l---t~~  373 (430)
T PRK00178        309 GKPQIYKVNVNGGRA----------ERVTFVGNYNARPRLSADGK--TLVMVHRQDGNFHVAAQDLQRGSVRIL---TDT  373 (430)
T ss_pred             CCceEEEEECCCCCE----------EEeecCCCCccceEECCCCC--EEEEEEccCCceEEEEEECCCCCEEEc---cCC
Confidence            3  577777765531          11111122233568999995  454443 333  588899888753322   211


Q ss_pred             ccCCCeEEEEEccCCCEEEEeccC-C--cEEEEec
Q 022590          260 QSKSPIRQTAMSYDGSTILSCCED-G--AIWRWDA  291 (294)
Q Consensus       260 ~~~~~v~~~~~s~~~~~l~s~~~d-g--~i~vw~~  291 (294)
                      .   ......|+|+|+.++..+.+ |  .|+++++
T Consensus       374 ~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        374 S---LDESPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             C---CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            1   12245899999988876543 3  3555554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.49  E-value=3.3e-11  Score=85.12  Aligned_cols=238  Identities=12%  Similarity=0.038  Sum_probs=156.5

Q ss_pred             EEEEeecCCeEEEEEcCCccc-cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590           25 FLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  103 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  103 (294)
                      +||.|+..|...+|...+.+. .+....|...|+-+.-..+...-+..++.|.++++.+++-+........   ..-.+.
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~---~~~~~n  162 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN---QNLTQN  162 (344)
T ss_pred             EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec---ccccee
Confidence            799999999999999986543 2333334443332221111233466678899999998865544333321   112388


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEe
Q 022590          104 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK  181 (294)
Q Consensus       104 ~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  181 (294)
                      ++++++ ++.++++.+....|..|.+.........                    .......+.-.+.+|+  ...+|++
T Consensus       163 s~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~--------------------~~~a~t~D~gF~~S~s~~~~~FAv~  221 (344)
T KOG4532|consen  163 SLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIEN--------------------IYEAPTSDHGFYNSFSENDLQFAVV  221 (344)
T ss_pred             eeEEcC-CCceEEEecCCCcceEEEeCCccceeee--------------------eEecccCCCceeeeeccCcceEEEE
Confidence            999999 9999999999999999999873221111                    1222233344455665  6689999


Q ss_pred             eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc---
Q 022590          182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH---  258 (294)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---  258 (294)
                      ..||++.|||+|....+.    .......+.|.+.+..+.|++.+...+|+..-.-+.+.+.|+++........+..   
T Consensus       222 ~Qdg~~~I~DVR~~~tpm----~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~  297 (344)
T KOG4532|consen  222 FQDGTCAIYDVRNMATPM----AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVE  297 (344)
T ss_pred             ecCCcEEEEEecccccch----hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccc
Confidence            999999999999765321    1223344567899999999998876777777778899999999987555444431   


Q ss_pred             cccC-CCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          259 AQSK-SPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       259 ~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ..|. ..|..-.|+.++.-+.+.+++. +.=|++
T Consensus       298 ~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni  330 (344)
T KOG4532|consen  298 RKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNI  330 (344)
T ss_pred             ccccccccccccccCCCcccccccchh-hheeec
Confidence            1222 3377788888777666665553 334443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.48  E-value=3e-11  Score=97.06  Aligned_cols=194  Identities=15%  Similarity=0.100  Sum_probs=116.4

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecC---CeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCC--cEEE
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDE--SVRL   80 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg--~i~v   80 (294)
                      +...+...+|+  |+|+ +|+....+   ..|++||+.+++... +..+...+.+++|+| +++.| ++.+.++  .|.+
T Consensus       188 ~~~~~~~p~~S--pdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~  262 (417)
T TIGR02800       188 SREPILSPAWS--PDGQ-KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYV  262 (417)
T ss_pred             CCCceecccCC--CCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEEEEEECCCCCccEEE
Confidence            44567777887  9999 77766543   479999998876533 334556677899999 66655 4555554  5888


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCC--cEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      ||+.+++.... .   .+........|+| ++..|+..+ .++  .|.++|+....                        
T Consensus       263 ~d~~~~~~~~l-~---~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~------------------------  313 (417)
T TIGR02800       263 MDLDGKQLTRL-T---NGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGE------------------------  313 (417)
T ss_pred             EECCCCCEEEC-C---CCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC------------------------
Confidence            89887764433 2   2444556778999 766665544 344  46666665421                        


Q ss_pred             eEEeecCCCceeeccee--cceEEEeeCCC---eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          158 VFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      ...+..+........|+  +++++.++.++   .|.+||+.++..          ..+... .......|+|++.  .|+
T Consensus       314 ~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~----------~~l~~~-~~~~~p~~spdg~--~l~  380 (417)
T TIGR02800       314 VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE----------RVLTDT-GLDESPSFAPNGR--MIL  380 (417)
T ss_pred             EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe----------EEccCC-CCCCCceECCCCC--EEE
Confidence            11122233344455554  77888777665   788999876431          111111 1223457999985  555


Q ss_pred             EEcCCC---eEEEEeccC
Q 022590          233 IGNREG---KIFVWELQS  247 (294)
Q Consensus       233 ~~~~dg---~i~i~d~~~  247 (294)
                      ..+.++   .+++.+...
T Consensus       381 ~~~~~~~~~~l~~~~~~g  398 (417)
T TIGR02800       381 YATTRGGRGVLGLVSTDG  398 (417)
T ss_pred             EEEeCCCcEEEEEEECCC
Confidence            544433   355555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.45  E-value=1.7e-09  Score=82.57  Aligned_cols=243  Identities=10%  Similarity=0.002  Sum_probs=141.7

Q ss_pred             ecCCCceEEEEee---------cCCeEEEEEcCCccccceecccCc-------ceEEEEeCCCCCceEEEee-C-CCcEE
Q 022590           18 CNVDGIPFLVAGG---------INGIIRVIDVSNEKLHKSFVGHGD-------SINEIRTQPLKPSLVVSAS-K-DESVR   79 (294)
Q Consensus        18 ~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~~-~-dg~i~   79 (294)
                      .+|||+.+.++.+         .+..|.+||..+.+.+..+....+       ....++++| ++++|+... . +..|.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence            4599984444555         578999999999999888764222       234789999 888777665 3 78999


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      +.|+.+++.+..+..    .+...-...++ + . +.+-+.||......+..........                .++.
T Consensus       132 VvD~~~~kvv~ei~v----p~~~~vy~t~e-~-~-~~~~~~Dg~~~~v~~d~~g~~~~~~----------------~~vf  188 (352)
T TIGR02658       132 VVDLEGKAFVRMMDV----PDCYHIFPTAN-D-T-FFMHCRDGSLAKVGYGTKGNPKIKP----------------TEVF  188 (352)
T ss_pred             EEECCCCcEEEEEeC----CCCcEEEEecC-C-c-cEEEeecCceEEEEecCCCceEEee----------------eeee
Confidence            999999999988873    22222222221 2 2 2233456666555444321111000                0000


Q ss_pred             Ee---ecCCCceeecce-ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee----ecCCCCeeEEEEcccCCcceE
Q 022590          160 IA---SVHSNYVDCNRW-LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAA  231 (294)
Q Consensus       160 ~~---~~~~~~i~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l  231 (294)
                      .-   .....+  .... ++.++.+... |.|.+.|+........ .....+..-    ......+..++++++++..++
T Consensus       189 ~~~~~~v~~rP--~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~-~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV  264 (352)
T TIGR02658       189 HPEDEYLINHP--AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFL-PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL  264 (352)
T ss_pred             cCCccccccCC--ceEcCCCcEEEEecC-CeEEEEecCCCcceec-ceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence            00   000111  1111 3666666555 9999999765432111 011111100    112334455999999963333


Q ss_pred             EEE--------cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEec-cCCcEEEEecCC
Q 022590          232 AIG--------NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCC-EDGAIWRWDAIP  293 (294)
Q Consensus       232 ~~~--------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~vw~~~~  293 (294)
                      +.-        ...+.|.++|..+.+........     ..+..++++||++ +|++.. .++.|.+.|..+
T Consensus       265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-----~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-----HEIDSINVSQDAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             EecCCccccccCCCCEEEEEECCCCeEEEEEeCC-----CceeeEEECCCCCeEEEEeCCCCCcEEEEECcC
Confidence            221        22358999999888643333322     4688999999999 887666 678899999864

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=5.4e-10  Score=89.92  Aligned_cols=210  Identities=10%  Similarity=0.073  Sum_probs=118.8

Q ss_pred             eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC-CC--cEEEEEcCCCceEEEeeccCCCCCceeEEEEecC
Q 022590           34 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  110 (294)
Q Consensus        34 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~  110 (294)
                      .|.++|.+.... +.+..+...+.+..|+| +++.|+..+. ++  .|.+||+.+++.... ..   ..+......|+| 
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~---~~g~~~~~~wSP-  271 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKV-TS---FPGINGAPRFSP-  271 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEe-cC---CCCCcCCeeECC-
Confidence            677778655433 45556678899999999 7777776543 33  588889988765332 21   233345789999 


Q ss_pred             CCceE-EeeecCCc--EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-C
Q 022590          111 DIYRI-ASCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-D  184 (294)
Q Consensus       111 ~~~~l-~~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-d  184 (294)
                      ++..| ++...+|.  |.++|+.+..                        ...+..+........|+  ++.++..+. +
T Consensus       272 DG~~La~~~~~~g~~~Iy~~dl~tg~------------------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~  327 (448)
T PRK04792        272 DGKKLALVLSKDGQPEIYVVDIATKA------------------------LTRITRHRAIDTEPSWHPDGKSLIFTSERG  327 (448)
T ss_pred             CCCEEEEEEeCCCCeEEEEEECCCCC------------------------eEECccCCCCccceEECCCCCEEEEEECCC
Confidence            66655 45566775  6666776521                        11122233333445564  666655443 3


Q ss_pred             C--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC--eEEEEeccCCCceeeeeccccc
Q 022590          185 N--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPVLIARLSHAQ  260 (294)
Q Consensus       185 ~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~  260 (294)
                      +  .|.++|+.+++.          ..+..........+|+|+++ .++++...++  .|.++|+.+++...   +....
T Consensus       328 g~~~Iy~~dl~~g~~----------~~Lt~~g~~~~~~~~SpDG~-~l~~~~~~~g~~~I~~~dl~~g~~~~---lt~~~  393 (448)
T PRK04792        328 GKPQIYRVNLASGKV----------SRLTFEGEQNLGGSITPDGR-SMIMVNRTNGKFNIARQDLETGAMQV---LTSTR  393 (448)
T ss_pred             CCceEEEEECCCCCE----------EEEecCCCCCcCeeECCCCC-EEEEEEecCCceEEEEEECCCCCeEE---ccCCC
Confidence            3  466667765431          11211222233468999996 2333334344  45567777765322   22111


Q ss_pred             cCCCeEEEEEccCCCEEEEecc-CCc--EEEEec
Q 022590          261 SKSPIRQTAMSYDGSTILSCCE-DGA--IWRWDA  291 (294)
Q Consensus       261 ~~~~v~~~~~s~~~~~l~s~~~-dg~--i~vw~~  291 (294)
                         ......|+|+|++|+..+. +|.  +++++.
T Consensus       394 ---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        394 ---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             ---CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence               1223479999998876554 343  566655

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=8.2e-13  Score=114.68  Aligned_cols=217  Identities=14%  Similarity=0.256  Sum_probs=154.5

Q ss_pred             EEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEee
Q 022590           15 SWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA   93 (294)
Q Consensus        15 ~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~   93 (294)
                      ++.-+|... +-++|+.||.|++|....++.+..+. .-...|+.+.|+. .|+.+..+..||.+.+|... .+.....+
T Consensus      2213 r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk~~~s~q 2289 (2439)
T KOG1064|consen 2213 RMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PKPYTSWQ 2289 (2439)
T ss_pred             eecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Ccceeccc
Confidence            344457666 99999999999999998888776664 2337899999999 78888899999999999986 44444444


Q ss_pred             ccCCCCCceeEEEEecCCCceEEeee---cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceee
Q 022590           94 GAGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC  170 (294)
Q Consensus        94 ~~~~~~~~v~~l~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (294)
                         .|.....++.|-.   ..+++++   .++.+.+||......                    .  -..-..|...+++
T Consensus      2290 ---chnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~--------------------~--s~v~~~H~~gaT~ 2341 (2439)
T KOG1064|consen 2290 ---CHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPM--------------------N--SLVHTCHDGGATV 2341 (2439)
T ss_pred             ---cCCccccceeeee---hhhhccccCCCCCcccchhcccCcc--------------------c--ceeeeecCCCceE
Confidence               6999999999974   5567664   578999999875211                    1  1222789999999


Q ss_pred             ccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590          171 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       171 ~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                      +++-  .+.|++|+.+|.|++||++..+         ..+.++.         +. ..  .++++|+..|.++||++...
T Consensus      2342 l~~~P~~qllisggr~G~v~l~D~rqrq---------l~h~~~~---------~~-~~--~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2342 LAYAPKHQLLISGGRKGEVCLFDIRQRQ---------LRHTFQA---------LD-TR--EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             EEEcCcceEEEecCCcCcEEEeehHHHH---------HHHHhhh---------hh-hh--heeeccCcccceEEEEcccc
Confidence            9996  6789999999999999998655         3333332         22 22  58999999999999999886


Q ss_pred             CceeeeeccccccCCCe----EEEEEccCCCEEEEeccCCc
Q 022590          249 PPVLIARLSHAQSKSPI----RQTAMSYDGSTILSCCEDGA  285 (294)
Q Consensus       249 ~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~s~~~dg~  285 (294)
                      .........+ .+.+-.    ..+...+ .+.|.+++.||+
T Consensus      2401 ~ll~~~p~e~-ak~gfFr~~g~Q~~v~~-~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2401 GLLHTFPSEH-AKQGFFRNIGMQINVGQ-CNRIFSCGADGT 2439 (2439)
T ss_pred             chhhcCchhh-cccchhhhcCceeeecc-CceEEEecCCCC
Confidence            5332222222 222111    2222222 356777777773

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=1.2e-10  Score=93.65  Aligned_cols=214  Identities=14%  Similarity=0.065  Sum_probs=116.2

Q ss_pred             CceeEEEEEeecCCCceEEEEeec-CC--eEEEEEcCCccccceecccCcceEEEEeCCCCCceEE-EeeCCCc--EEEE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGI-NG--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDES--VRLW   81 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~--i~vw   81 (294)
                      .+.+....|+  |||+ .|+..+. ++  .|.+||+.+++... +....+.....+|+| +++.|+ +.+.+|.  |.++
T Consensus       217 ~~~~~~p~wS--PDG~-~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        217 PEPLMSPAWS--PDGR-KLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             CCcccCceEC--CCCC-EEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCEEEEEEeCCCCeEEEEE
Confidence            3456677887  9998 6665543 33  58889988776432 222233445789999 666554 5666775  7777


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEe-eecCCc--EEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS-CGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~-~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      |+.+++... +.   .+........|+| ++..++. ...++.  |.++|+.++..                        
T Consensus       292 dl~tg~~~~-lt---~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~------------------------  342 (448)
T PRK04792        292 DIATKALTR-IT---RHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKV------------------------  342 (448)
T ss_pred             ECCCCCeEE-Cc---cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCE------------------------
Confidence            887776543 33   2455667889999 6665544 444454  55555554210                        


Q ss_pred             EEeecCCCceeecce--ecceEEEeeC-CC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590          159 FIASVHSNYVDCNRW--LGDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~--~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      ..+...........|  +|++++..+. ++  .|.++|+.+++.       ..+   ... .......|+|+++ .++++
T Consensus       343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-------~~l---t~~-~~d~~ps~spdG~-~I~~~  410 (448)
T PRK04792        343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-------QVL---TST-RLDESPSVAPNGT-MVIYS  410 (448)
T ss_pred             EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-------EEc---cCC-CCCCCceECCCCC-EEEEE
Confidence            011111111122344  3667666544 34  455677766532       111   111 1112347999995 33444


Q ss_pred             EcCCCe--EEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590          234 GNREGK--IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY  272 (294)
Q Consensus       234 ~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~  272 (294)
                      ...+|.  +++++.+...   ...+.  .+.+.+...+|+|
T Consensus       411 ~~~~g~~~l~~~~~~G~~---~~~l~--~~~g~~~~p~Wsp  446 (448)
T PRK04792        411 TTYQGKQVLAAVSIDGRF---KARLP--AGQGEVKSPAWSP  446 (448)
T ss_pred             EecCCceEEEEEECCCCc---eEECc--CCCCCcCCCccCC
Confidence            444443  6667764432   23333  2234567778887

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=1.1e-11  Score=99.08  Aligned_cols=242  Identities=14%  Similarity=0.236  Sum_probs=160.0

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---------------cccceecccCcceEEEEeCCCCCceEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---------------KLHKSFVGHGDSINEIRTQPLKPSLVV   70 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~h~~~v~~~~~~~~~~~~l~   70 (294)
                      .......|++|+  .... ++|+|+.||.+++..+.+.               ..-+++.+|.+.|.-+.|+. +.+.|-
T Consensus        12 PnnvkL~c~~WN--ke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLT   87 (1189)
T KOG2041|consen   12 PNNVKLHCAEWN--KESG-YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLT   87 (1189)
T ss_pred             CCCceEEEEEEc--ccCC-eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-cccccc
Confidence            345678999997  4444 9999999999999988653               23357789999999999998 778899


Q ss_pred             EeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590           71 SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  150 (294)
Q Consensus        71 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (294)
                      +...+|.|.||-+-.|.-......- ...+.|.+++|+. +|..+.....||.|.+=.+..+...               
T Consensus        88 tSDt~GlIiVWmlykgsW~EEMiNn-RnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIw---------------  150 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEMINN-RNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIW---------------  150 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHHhhC-cCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceec---------------
Confidence            9999999999999887654433321 2567799999998 8888999999999988776652210               


Q ss_pred             CceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCc--eeeeeeecCCCCeeEEEEc---
Q 022590          151 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA--DILQKYPVPECDIWFIKFS---  223 (294)
Q Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~---  223 (294)
                               ...-.......+.|+  ...++.+-..|.+.+||.+..-........  .....+......+..+.|.   
T Consensus       151 ---------gKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~  221 (1189)
T KOG2041|consen  151 ---------GKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP  221 (1189)
T ss_pred             ---------chhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence                     000001112244454  334555566789999997654221111000  0001111111223334433   


Q ss_pred             -----ccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590          224 -----CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       224 -----~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                           |+.  ..++++...|.+.+..-.+.....+....     -.+....|+++|.+||.++.|.
T Consensus       222 ~~~v~pdr--P~lavcy~nGr~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  222 YQPVPPDR--PRLAVCYANGRMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             cccCCCCC--CEEEEEEcCceehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcc
Confidence                 333  68999999999998876655432332222     4588999999999999988653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=8.8e-10  Score=85.63  Aligned_cols=255  Identities=16%  Similarity=0.216  Sum_probs=150.0

Q ss_pred             EEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEe-----eC-----CCcEEEEE
Q 022590           13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-----SK-----DESVRLWN   82 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-----~~-----dg~i~vwd   82 (294)
                      |..+.++++|+ ++| -+.+..+.|++..++..+.+...  ..+.++.|+| -+.+|.+=     ..     .-.+.+|+
T Consensus        37 ~~v~~~S~~G~-lfA-~~~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   37 CNVFAYSNNGR-LFA-YSDNQVVKVFEIATLKVVLCVEL--KKTYDLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             ceeEEEcCCCc-EEE-EEcCCeEEEEEccCCcEEEEecc--ceeeeeeecc-cccccccccccccccCCCCCCCceeeee
Confidence            34444558897 444 45567999999988864444432  2789999999 77777552     11     23466888


Q ss_pred             cCCCceEEEeecc-------------------------------------CCCCCceeEEEEecCCC-ceEEe-----ee
Q 022590           83 VQTGICILIFAGA-------------------------------------GGHRNEVLSVDFHPSDI-YRIAS-----CG  119 (294)
Q Consensus        83 ~~~~~~~~~~~~~-------------------------------------~~~~~~v~~l~~~~~~~-~~l~~-----~~  119 (294)
                      ++++.....++..                                     .-|...|+.+.++|... ..+++     .|
T Consensus       112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG  191 (566)
T KOG2315|consen  112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG  191 (566)
T ss_pred             eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC
Confidence            8774322221110                                     02556688888888313 33333     35


Q ss_pred             cCCcEEEEecccccccc-----------ccceeecCCCC---------------C-CCCcee------eeceEEeecCCC
Q 022590          120 MDNTVKIWSMKEFWTYV-----------EKSFTWTDLPS---------------K-FPTKYV------QFPVFIASVHSN  166 (294)
Q Consensus       120 ~dg~i~~wd~~~~~~~~-----------~~~~~~~~~~~---------------~-~~~~~~------~~~~~~~~~~~~  166 (294)
                      .-+.+++|.........           .-.+.|.....               . .....+      ......-..-.+
T Consensus       192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G  271 (566)
T KOG2315|consen  192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG  271 (566)
T ss_pred             CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence            55678888876311000           00111111100               0 000000      001111112368


Q ss_pred             ceeeccee--cceEEE--eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc---CCCe
Q 022590          167 YVDCNRWL--GDFILS--KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN---REGK  239 (294)
Q Consensus       167 ~i~~~~~~--~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~dg~  239 (294)
                      +|.++.|+  +..|++  |-.-..+.+||++-.          +  .+...+++-+.+-|+|.|+  +++.++   ..|.
T Consensus       272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----------~--v~df~egpRN~~~fnp~g~--ii~lAGFGNL~G~  337 (566)
T KOG2315|consen  272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----------P--VFDFPEGPRNTAFFNPHGN--IILLAGFGNLPGD  337 (566)
T ss_pred             CceEEEECCCCCEEEEEEecccceEEEEcCCCC----------E--eEeCCCCCccceEECCCCC--EEEEeecCCCCCc
Confidence            89999997  544444  455678999999742          2  3344566777899999995  554433   4689


Q ss_pred             EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc------CCcEEEEecC
Q 022590          240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE------DGAIWRWDAI  292 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~vw~~~  292 (294)
                      |.+||+.+.+  .+..+..    ..-+-+.|+|||++++|+..      |+.++||++.
T Consensus       338 mEvwDv~n~K--~i~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  338 MEVWDVPNRK--LIAKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             eEEEeccchh--hcccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            9999999865  3333331    12456899999999999864      6789999874

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.41  E-value=3e-12  Score=102.32  Aligned_cols=226  Identities=19%  Similarity=0.342  Sum_probs=155.3

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCc--ceEEEEeCCCC--CceEEEeeCCCcEEEEEc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD--SINEIRTQPLK--PSLVVSASKDESVRLWNV   83 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~--~v~~~~~~~~~--~~~l~s~~~dg~i~vwd~   83 (294)
                      .+.+.++..+  |.|+ -+|.++.-| +.+.|++..-....+-.|..  .|-...|+|..  ...+++.+. ..-.+|++
T Consensus        24 ~~~~~a~si~--p~gr-di~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnl   98 (1081)
T KOG0309|consen   24 DGGFNAVSIN--PSGR-DIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNL   98 (1081)
T ss_pred             cCcccceeec--cccc-hhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCc-chhhhhhh
Confidence            3556666666  8887 777777776 55667765432223333433  46778888742  234555444 44558988


Q ss_pred             CCC--ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           84 QTG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        84 ~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      ...  +.+..+.  .+|...|+.+.|+|+....+++++.|-.+..||++..                      ..|+...
T Consensus        99 A~ss~~aIef~l--hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp----------------------~~p~ys~  154 (1081)
T KOG0309|consen   99 AKSSSNAIEFVL--HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP----------------------HRPFYST  154 (1081)
T ss_pred             hcCCccceEEEE--ecCccceeccccCCCCCcceeeccccccceeeeccCC----------------------Ccceeee
Confidence            533  3333322  2799999999999999999999999999999999984                      4456666


Q ss_pred             ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590          162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  239 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~  239 (294)
                      ..-...-..+.|+  ...+.+.+..+.|++||.+.+..        ++..++.+...++.+.|..-.. ..+.+.+.||+
T Consensus       155 ~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~--------pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~t  225 (1081)
T KOG0309|consen  155 SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST--------PLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGT  225 (1081)
T ss_pred             ecccccCceeeecccCcchhhhccCCceEEEeccCCCc--------ceEEecccceeeehHHHhhhhh-hhhcccCCCCc
Confidence            6666667778887  33444457778899999998764        5666777777788888876543 56888999999


Q ss_pred             EEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590          240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (294)
                      |+.||.............   ...+|..-++.|-|
T Consensus       226 vkfw~y~kSt~e~~~~vt---t~~piw~~r~~Pfg  257 (1081)
T KOG0309|consen  226 VKFWDYSKSTTESKRTVT---TNFPIWRGRYLPFG  257 (1081)
T ss_pred             eeeecccccccccceecc---ccCcceeccccccC
Confidence            999999876544444432   23567777777744

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.8e-10  Score=90.92  Aligned_cols=217  Identities=12%  Similarity=0.032  Sum_probs=121.5

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecC---CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEE-EeeCCC--cEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDE--SVR   79 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg--~i~   79 (294)
                      .+.+.+...+|+  |||+ .|+..+.+   ..|.+|++.+++... +....+.+...+|+| +++.|+ +...+|  .|.
T Consensus       196 ~~~~~~~~p~wS--pDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        196 QSREPILSPRWS--PDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             cCCCceeeeeEC--CCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCEEEEEEccCCCceEE
Confidence            455677788887  9998 66655433   469999998876533 333344556789999 666665 555555  578


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEee-ecCC--cEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~-~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      +||+.+++... +.   .+........|+| ++..++.. ..+|  .|.++|+..+...                     
T Consensus       271 ~~d~~~~~~~~-lt---~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~---------------------  324 (430)
T PRK00178        271 VMDLASRQLSR-VT---NHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAE---------------------  324 (430)
T ss_pred             EEECCCCCeEE-cc---cCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEE---------------------
Confidence            88998776543 33   2555567789999 66555444 3444  4666666542110                     


Q ss_pred             ceEEeecCCCceeecce--ecceEEEeeCC-C--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590          157 PVFIASVHSNYVDCNRW--LGDFILSKSVD-N--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  231 (294)
Q Consensus       157 ~~~~~~~~~~~i~~~~~--~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  231 (294)
                      .+ ....  .......|  +++.++..+.+ +  .|.++|+.+++.       ..+..   . .......|+|+++ .++
T Consensus       325 ~l-t~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-------~~lt~---~-~~~~~p~~spdg~-~i~  389 (430)
T PRK00178        325 RV-TFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-------RILTD---T-SLDESPSVAPNGT-MLI  389 (430)
T ss_pred             Ee-ecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-------EEccC---C-CCCCCceECCCCC-EEE
Confidence            00 0111  11112234  36777665543 3  588889876542       11111   1 1112357999995 233


Q ss_pred             EEEcCCC--eEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590          232 AIGNREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD  273 (294)
Q Consensus       232 ~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (294)
                      ++...+|  .+.++++....   ...+.  .+.+.+...+|+|-
T Consensus       390 ~~~~~~g~~~l~~~~~~g~~---~~~l~--~~~g~~~~p~ws~~  428 (430)
T PRK00178        390 YATRQQGRGVLMLVSINGRV---RLPLP--TAQGEVREPSWSPY  428 (430)
T ss_pred             EEEecCCceEEEEEECCCCc---eEECc--CCCCCcCCCccCCC
Confidence            3343333  46666765442   22232  22345666778763

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.40  E-value=4.2e-09  Score=92.70  Aligned_cols=264  Identities=13%  Similarity=0.063  Sum_probs=152.2

Q ss_pred             EEEEeecC-CCceEEEEeecCCeEEEEEcCCccccceecc--------------cCcceEEEEeCCCCCceEEE-eeCCC
Q 022590           13 TVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--------------HGDSINEIRTQPLKPSLVVS-ASKDE   76 (294)
Q Consensus        13 ~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~~l~s-~~~dg   76 (294)
                      .+++.  + +|+ ++++-+.++.|+++|.. ++.+..+.+              .-.....+++.+ +++.|+. -...+
T Consensus       572 gvavd--~~~g~-lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~  646 (1057)
T PLN02919        572 KLAID--LLNNR-LFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENH  646 (1057)
T ss_pred             eEEEE--CCCCe-EEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCc
Confidence            35554  4 355 77777888999999975 443333321              112357899998 5554444 44567


Q ss_pred             cEEEEEcCCCceEEEeeccC-------C-------CCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceee
Q 022590           77 SVRLWNVQTGICILIFAGAG-------G-------HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW  142 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~-------~-------~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  142 (294)
                      .|+++|..++. +..+....       +       .-.....++++|.++.++++.+.++.|++||........   +..
T Consensus       647 ~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~---~~G  722 (1057)
T PLN02919        647 ALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV---FSG  722 (1057)
T ss_pred             eEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE---Eec
Confidence            89999987654 33332100       0       012346899999667777887888999999987642210   000


Q ss_pred             cCCCCCCCCceeeeceEEeecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCC----Cceeeeeee----
Q 022590          143 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEG----TADILQKYP----  211 (294)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~----  211 (294)
                      .+......    ...  .....-.....++++  ++ ++++-+.++.|++||+.++.......    .......+.    
T Consensus       723 ~G~~~~~~----g~~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG  796 (1057)
T PLN02919        723 DGYERNLN----GSS--GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG  796 (1057)
T ss_pred             CCccccCC----CCc--cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence            00000000    000  000011233456665  45 55566677999999998653110000    000000000    


Q ss_pred             ----cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc---------ccccCCCeEEEEEccCCCEEE
Q 022590          212 ----VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS---------HAQSKSPIRQTAMSYDGSTIL  278 (294)
Q Consensus       212 ----~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~  278 (294)
                          ..-.....+++++++  .++++-..++.|++||..++.........         ....-.....++++++|++++
T Consensus       797 ~g~~~~l~~P~Gvavd~dG--~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV  874 (1057)
T PLN02919        797 VGSEVLLQHPLGVLCAKDG--QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV  874 (1057)
T ss_pred             chhhhhccCCceeeEeCCC--cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence                001134578899988  57788888999999999876432211100         001123567899999999999


Q ss_pred             EeccCCcEEEEecCC
Q 022590          279 SCCEDGAIWRWDAIP  293 (294)
Q Consensus       279 s~~~dg~i~vw~~~~  293 (294)
                      +-+.++.|++||+++
T Consensus       875 aDt~Nn~Irvid~~~  889 (1057)
T PLN02919        875 ADTNNSLIRYLDLNK  889 (1057)
T ss_pred             EECCCCEEEEEECCC
Confidence            989999999999864

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=2.2e-10  Score=92.43  Aligned_cols=249  Identities=12%  Similarity=0.138  Sum_probs=164.0

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCC-----------CceEEEeeCCC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK-----------PSLVVSASKDE   76 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~~l~s~~~dg   76 (294)
                      ...-.++.|+  |.|  ++|.|+.. .|.+-|..+-+.++.+..|...|+.+.|.|..           .-+||++...|
T Consensus        15 ~sN~~A~Dw~--~~G--LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   15 RSNRNAADWS--PSG--LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccccccccC--ccc--eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            3446788897  777  68887755 89999999999999999999999999998731           12678888899


Q ss_pred             cEEEEEcCCCceEEEeeccCCCCCceeEEEEecC---CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS---DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      .|.+||...+..+..+.   .|..++..++|-|.   ....|++-....++.+|+..++..                   
T Consensus        90 rIil~d~~~~s~~~~l~---~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-------------------  147 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLS---HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-------------------  147 (1062)
T ss_pred             cEEEEEehhhhhhhhhc---CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-------------------
Confidence            99999999998888887   58899999999873   225677777778999999988532                   


Q ss_pred             eeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee--------------ecC-CC
Q 022590          154 VQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY--------------PVP-EC  215 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--------------~~~-~~  215 (294)
                          ............|+.++   ...+...+..|.+.+-+.-...........-.+..-              ..+ ..
T Consensus       148 ----~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~  223 (1062)
T KOG1912|consen  148 ----FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTST  223 (1062)
T ss_pred             ----eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCC
Confidence                33333334445555554   455555566666665554433222111111011000              000 00


Q ss_pred             C--------eeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC--CEEEEeccCCc
Q 022590          216 D--------IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG--STILSCCEDGA  285 (294)
Q Consensus       216 ~--------i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~  285 (294)
                      +        ...++|+|.-+ +.++. .-...+.++|++-..+.....++    ++.+.-+.+-|++  ..|++.-.||.
T Consensus       224 ~~sa~fity~a~faf~p~~r-n~lfi-~~prellv~dle~~~~l~vvpie----r~~akfv~vlP~~~rd~LfclH~nG~  297 (1062)
T KOG1912|consen  224 PASAYFITYCAQFAFSPHWR-NILFI-TFPRELLVFDLEYECCLAVVPIE----RGGAKFVDVLPDPRRDALFCLHSNGR  297 (1062)
T ss_pred             CcchhHHHHHHhhhcChhhh-ceEEE-EeccceEEEcchhhceeEEEEec----cCCcceeEeccCCCcceEEEEecCCe
Confidence            0        11245677765 33333 34567999999888755554444    2334456666654  58999999999


Q ss_pred             EEEEecCC
Q 022590          286 IWRWDAIP  293 (294)
Q Consensus       286 i~vw~~~~  293 (294)
                      +.+|-.+.
T Consensus       298 ltirvrk~  305 (1062)
T KOG1912|consen  298 LTIRVRKE  305 (1062)
T ss_pred             EEEEEeec
Confidence            99997654

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=1.3e-09  Score=87.02  Aligned_cols=219  Identities=12%  Similarity=0.040  Sum_probs=120.7

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCce---EEEeeCCC--cEEEEEcCCCceEEEeeccCCCCCceeEEEE
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSL---VVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDF  107 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~  107 (294)
                      ..|.+.|.+.+.. +.+......+.+-+|+| +++.   +++...+|  .|.+.++..++......    ..+......|
T Consensus       165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----~~g~~~~p~w  238 (428)
T PRK01029        165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----LQGNQLMPTF  238 (428)
T ss_pred             ceEEEEcCCCCCc-eEcccCCCCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeec----CCCCccceEE
Confidence            4677777765544 44554556677889999 6653   23444444  47777887776544332    3444567899


Q ss_pred             ecCCCceEEeee-cCC----cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEE
Q 022590          108 HPSDIYRIASCG-MDN----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  180 (294)
Q Consensus       108 ~~~~~~~l~~~~-~dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  180 (294)
                      +| +++.|+..+ .+|    .+..|++.....                    ..+...............|+  |+.|+.
T Consensus       239 SP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~--------------------g~~~~lt~~~~~~~~~p~wSPDG~~Laf  297 (428)
T PRK01029        239 SP-RKKLLAFISDRYGNPDLFIQSFSLETGAI--------------------GKPRRLLNEAFGTQGNPSFSPDGTRLVF  297 (428)
T ss_pred             CC-CCCEEEEEECCCCCcceeEEEeecccCCC--------------------CcceEeecCCCCCcCCeEECCCCCEEEE
Confidence            99 776665543 333    233355543100                    00111111112223344565  776665


Q ss_pred             ee-CCCeEEEec--CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE-cCC--CeEEEEeccCCCceeee
Q 022590          181 KS-VDNEIVLWE--PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG-NRE--GKIFVWELQSSPPVLIA  254 (294)
Q Consensus       181 ~~-~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~  254 (294)
                      .+ .+|...+|.  +.....        ....+......+....|+|+++  .|+.. ..+  ..|.+||+.+++.... 
T Consensus       298 ~s~~~g~~~ly~~~~~~~g~--------~~~~lt~~~~~~~~p~wSPDG~--~Laf~~~~~g~~~I~v~dl~~g~~~~L-  366 (428)
T PRK01029        298 VSNKDGRPRIYIMQIDPEGQ--------SPRLLTKKYRNSSCPAWSPDGK--KIAFCSVIKGVRQICVYDLATGRDYQL-  366 (428)
T ss_pred             EECCCCCceEEEEECccccc--------ceEEeccCCCCccceeECCCCC--EEEEEEcCCCCcEEEEEECCCCCeEEc-
Confidence            54 456555554  432110        1222333334556789999995  45443 332  4699999988864322 


Q ss_pred             eccccccCCCeEEEEEccCCCEEEEec-c--CCcEEEEecCC
Q 022590          255 RLSHAQSKSPIRQTAMSYDGSTILSCC-E--DGAIWRWDAIP  293 (294)
Q Consensus       255 ~~~~~~~~~~v~~~~~s~~~~~l~s~~-~--dg~i~vw~~~~  293 (294)
                        .  .....+....|+|||+.|+..+ .  ...|+++|+..
T Consensus       367 --t--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~  404 (428)
T PRK01029        367 --T--TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT  404 (428)
T ss_pred             --c--CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence              2  1123467789999999887543 2  34588888753

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.39  E-value=1.6e-12  Score=94.67  Aligned_cols=155  Identities=14%  Similarity=0.222  Sum_probs=120.7

Q ss_pred             EEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-----ce
Q 022590           14 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-----IC   88 (294)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~   88 (294)
                      ++|+.+--|- . ++.+.+-.|-+-|++++-. +.|. ..+.|.++.|.. .+++++.|..+|.|..+|++.+     .+
T Consensus       217 CawSlni~gy-h-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~  291 (425)
T KOG2695|consen  217 CAWSLNIMGY-H-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWC  291 (425)
T ss_pred             hhhhhcccee-e-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcc
Confidence            3777666664 4 5666677899999988754 3344 567899999998 7889999999999999999854     45


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      ...+.    |.+.|+++..-..++.+|++.+.+|+|++||++..+.                    ...+....+|.+.-
T Consensus       292 a~rly----h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~--------------------~~~V~qYeGHvN~~  347 (425)
T KOG2695|consen  292 AQRLY----HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC--------------------KKSVMQYEGHVNLS  347 (425)
T ss_pred             eEEEE----cCcchhhhhhhccccceEeeccCcCceeEeeehhhhc--------------------ccceeeeecccccc
Confidence            56665    9999999988765788899999999999999997321                    23467777887765


Q ss_pred             eeccee----cceEEEeeCCCeEEEecCCCCCC
Q 022590          169 DCNRWL----GDFILSKSVDNEIVLWEPKMKEQ  197 (294)
Q Consensus       169 ~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~  197 (294)
                      .-+-+.    ...+++++.|...|+|.++.+..
T Consensus       348 a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL  380 (425)
T KOG2695|consen  348 AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL  380 (425)
T ss_pred             cccccccccccceEEEccCeeEEEEEecccCce
Confidence            555553    56788899999999999998763

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=1.1e-10  Score=94.16  Aligned_cols=232  Identities=13%  Similarity=0.180  Sum_probs=157.6

Q ss_pred             CcccccCceeEEEEEeecC--------C-CceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC--CC-ceE
Q 022590            2 CYVDQKEESFYTVSWACNV--------D-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL--KP-SLV   69 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~--------~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~--~~-~~l   69 (294)
                      ..++.|+..|+.+.|++-|        . ...+||++.-.|.|.+||...+..+..+..|.+++..++|-+.  +. .+|
T Consensus        49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L  128 (1062)
T KOG1912|consen   49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL  128 (1062)
T ss_pred             hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence            4567899999999999632        1 3447888888999999999999999999999999999999763  22 567


Q ss_pred             EEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccc--cceeecCCCC
Q 022590           70 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE--KSFTWTDLPS  147 (294)
Q Consensus        70 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~--~~~~~~~~~~  147 (294)
                      ++-....++.+|+..+|+......   .......|+.+.|.+...+..-+..|.+.+-+.-.......  +.+.....-+
T Consensus       129 laIh~ss~lvLwntdtG~k~Wk~~---ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~S  205 (1062)
T KOG1912|consen  129 LAIHGSSTLVLWNTDTGEKFWKYD---YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHS  205 (1062)
T ss_pred             EEecCCcEEEEEEccCCceeeccc---cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCcc
Confidence            777777899999999999888776   34456778999998888887777788887777654221111  1111110000


Q ss_pred             CCCCceeeeceEEeecCC---C----ceee--ccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC
Q 022590          148 KFPTKYVQFPVFIASVHS---N----YVDC--NRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC  215 (294)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~---~----~i~~--~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  215 (294)
                      ...  ........-..+.   .    ...|  ++|+   .+.++. ...+.+.++|++-..         .+...+.+.+
T Consensus       206 dl~--~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~---------~l~vvpier~  273 (1062)
T KOG1912|consen  206 DLA--HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYEC---------CLAVVPIERG  273 (1062)
T ss_pred             chh--hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhc---------eeEEEEeccC
Confidence            000  0000000000000   0    0112  2333   333333 456789999998544         6777777888


Q ss_pred             CeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590          216 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                      .+..+.+-|++....|++.-.+|.+.+|-.+..
T Consensus       274 ~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~  306 (1062)
T KOG1912|consen  274 GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEE  306 (1062)
T ss_pred             CcceeEeccCCCcceEEEEecCCeEEEEEeecc
Confidence            888899999998889999999999999987653

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=7.7e-10  Score=86.03  Aligned_cols=259  Identities=17%  Similarity=0.240  Sum_probs=154.0

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC-----------CCcEEE
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-----------DESVRL   80 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----------dg~i~v   80 (294)
                      +-+.||  |.|. ||++-..-| |.+|--.+-..++.+. |. .|.-+.||| +.++|++-+.           ...++|
T Consensus       214 tyv~wS--P~GT-YL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~I  286 (698)
T KOG2314|consen  214 TYVRWS--PKGT-YLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLII  286 (698)
T ss_pred             eeEEec--CCce-EEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCC-ccceEEEecCCccccCcccCCCceEEE
Confidence            446776  9998 999998876 8999877767777776 53 588899999 8899998653           256899


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccce--------eecCCCCCC---
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF--------TWTDLPSKF---  149 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--------~~~~~~~~~---  149 (294)
                      ||+.+|...+.|..+......-.-+.|+. ++.++|.-.. ..|.||+.......-...+        .|.+.....   
T Consensus       287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYw  364 (698)
T KOG2314|consen  287 WDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYW  364 (698)
T ss_pred             EEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEE
Confidence            99999999998885433323334467988 8888887766 5788888777443333322        222211100   


Q ss_pred             --CCceeeeceEEeecCC---------Ccee--ecce--ecceEEEee----------CCCeEEEecCCCCCCCCCCCCc
Q 022590          150 --PTKYVQFPVFIASVHS---------NYVD--CNRW--LGDFILSKS----------VDNEIVLWEPKMKEQSPGEGTA  204 (294)
Q Consensus       150 --~~~~~~~~~~~~~~~~---------~~i~--~~~~--~~~~l~~~~----------~d~~i~iwd~~~~~~~~~~~~~  204 (294)
                        ........+..+....         -.|.  .+-|  +|++|+.--          .-..+.|+.++....       
T Consensus       365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-------  437 (698)
T KOG2314|consen  365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-------  437 (698)
T ss_pred             cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-------
Confidence              0000000000000000         0111  1223  256655421          122355555554332       


Q ss_pred             eeeeeeecCCCCeeEEEEcccCCcceEEEE-cCCCeEEEEeccCC--CceeeeeccccccCCCeEEEEEccCCCEEEEe-
Q 022590          205 DILQKYPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSS--PPVLIARLSHAQSKSPIRQTAMSYDGSTILSC-  280 (294)
Q Consensus       205 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-  280 (294)
                       ++...+. ...+...+|-|.|+.-.+++| ....++.+|.+++.  ++..+..+.    ....+.+.|+|.|++++.+ 
T Consensus       438 -pve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~  511 (698)
T KOG2314|consen  438 -PVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAA  511 (698)
T ss_pred             -Cceeeec-chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEE
Confidence             2222332 345777889999863222333 23467889988743  222333332    2457889999999998876 


Q ss_pred             --ccCCcEEEEecC
Q 022590          281 --CEDGAIWRWDAI  292 (294)
Q Consensus       281 --~~dg~i~vw~~~  292 (294)
                        |..|.+.++|+.
T Consensus       512 l~s~~g~l~F~D~~  525 (698)
T KOG2314|consen  512 LVSRRGDLEFYDTD  525 (698)
T ss_pred             ecccccceEEEecc
Confidence              457889999875

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.37  E-value=1.2e-09  Score=87.34  Aligned_cols=221  Identities=14%  Similarity=0.076  Sum_probs=122.4

Q ss_pred             ceeEEEEEeecCCCceE-E-EEeecC--CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee-CCC----cEE
Q 022590            9 ESFYTVSWACNVDGIPF-L-VAGGIN--GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE----SVR   79 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~-l-~~~~~d--g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg----~i~   79 (294)
                      +.+..-+|+  |||+.+ + ++...+  ..|.+.++.+++.. .+....+.....+|+| +++.|+..+ .+|    .+.
T Consensus       185 ~~~~sP~wS--PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~  260 (428)
T PRK01029        185 SLSITPTWM--HIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQ  260 (428)
T ss_pred             CCcccceEc--cCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECC-CCCEEEEEECCCCCcceeEE
Confidence            344555776  998732 2 244444  35888888877543 3333445566789999 776666544 223    344


Q ss_pred             EEEcCCC---ceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           80 LWNVQTG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        80 vwd~~~~---~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      .|++..+   +......   +........+|+| ++..|+..+ .+|...+|.+.....                    .
T Consensus       261 ~~~~~~g~~g~~~~lt~---~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~--------------------g  316 (428)
T PRK01029        261 SFSLETGAIGKPRRLLN---EAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPE--------------------G  316 (428)
T ss_pred             EeecccCCCCcceEeec---CCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECccc--------------------c
Confidence            4776653   3222222   2223446789999 776555544 567666665432000                    0


Q ss_pred             eceEEeecCCCceeeccee--cceEEEeeCC---CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590          156 FPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA  230 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  230 (294)
                      .....+..+...+....|+  |+.|+..+.+   ..|.+||+.+++.          ..+......+....|+|+++  .
T Consensus       317 ~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----------~~Lt~~~~~~~~p~wSpDG~--~  384 (428)
T PRK01029        317 QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----------YQLTTSPENKESPSWAIDSL--H  384 (428)
T ss_pred             cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----------EEccCCCCCccceEECCCCC--E
Confidence            0011222233344555665  7777765543   4699999987642          12222223456688999985  4


Q ss_pred             EE-EEcC--CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590          231 AA-IGNR--EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       231 l~-~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (294)
                      |+ +...  ...|+++|+..++...+..     ..+.+...+|+|-.
T Consensus       385 L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-----~~g~~~~p~Ws~~~  426 (428)
T PRK01029        385 LVYSAGNSNESELYLISLITKKTRKIVI-----GSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEEECCCCCceEEEEECCCCCEEEeec-----CCCcccCceecCCC
Confidence            44 3332  4568888988775333221     22346677888753

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.35  E-value=8.1e-11  Score=85.05  Aligned_cols=232  Identities=19%  Similarity=0.199  Sum_probs=142.3

Q ss_pred             CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc-eEE-EeeccCCCC------------CceeEEEEec-CCCceEEe
Q 022590           53 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CIL-IFAGAGGHR------------NEVLSVDFHP-SDIYRIAS  117 (294)
Q Consensus        53 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~-~~~~~~~~~------------~~v~~l~~~~-~~~~~l~~  117 (294)
                      .+.|+++.|.. .|.+|++|...|.|.++.-+... +.. .+..+++|.            ..|..+.|.. .+...++.
T Consensus        26 ad~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          26 ADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             cceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            46789999998 78999999999999999765332 111 111122333            4578888864 23356777


Q ss_pred             eecCCcEEEEecccccccc------ccceeecCCCCCCCCce-------------eeeceE-EeecCCCceeeccee-cc
Q 022590          118 CGMDNTVKIWSMKEFWTYV------EKSFTWTDLPSKFPTKY-------------VQFPVF-IASVHSNYVDCNRWL-GD  176 (294)
Q Consensus       118 ~~~dg~i~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~~~~~i~~~~~~-~~  176 (294)
                      .+.|.+|++|.+.......      ...+.............             ...|.. ....|+-.|.+++++ ..
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7889999999998732111      11111111100000000             011111 225688888999997 44


Q ss_pred             eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC-----CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc-
Q 022590          177 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-  250 (294)
Q Consensus       177 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-  250 (294)
                      ..+....|-+|.+|++.-....     . -+-..+.+     ...|++..|+|... +.+.-.+..|.|++-|++.... 
T Consensus       185 et~lSaDdLrINLWnl~i~D~s-----F-nIVDiKP~nmeeLteVItSaeFhp~~c-n~fmYSsSkG~Ikl~DlRq~alc  257 (460)
T COG5170         185 ETLLSADDLRINLWNLEIIDGS-----F-NIVDIKPHNMEELTEVITSAEFHPEMC-NVFMYSSSKGEIKLNDLRQSALC  257 (460)
T ss_pred             heeeeccceeeeeccccccCCc-----e-EEEeccCccHHHHHHHHhhcccCHhHc-ceEEEecCCCcEEehhhhhhhhc
Confidence            4445577889999999755421     1 11122222     23577889999876 5677778899999999984321 


Q ss_pred             -----eeeeeccc------cccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          251 -----VLIARLSH------AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       251 -----~~~~~~~~------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                           .....+..      .+-...|..+.|+++|+++++-+.- +|++||++.
T Consensus       258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm  310 (460)
T COG5170         258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNM  310 (460)
T ss_pred             cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEeccc
Confidence                 11111111      1223568999999999999987554 699999864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.35  E-value=9.6e-09  Score=76.00  Aligned_cols=255  Identities=12%  Similarity=0.038  Sum_probs=155.2

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeec---CCeEEEEEcCC--cccc--ceecccCcceEEEEeCCCCCceEEEeeC-CCc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSN--EKLH--KSFVGHGDSINEIRTQPLKPSLVVSASK-DES   77 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~--~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~   77 (294)
                      .+.+..+=|+|+  |+++ +|.++..   +|.|.-|.++.  |++.  ........+-+.+++++ ++++++++.. .|.
T Consensus        37 ~~~~nptyl~~~--~~~~-~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~  112 (346)
T COG2706          37 AELGNPTYLAVN--PDQR-HLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGS  112 (346)
T ss_pred             cccCCCceEEEC--CCCC-EEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCce
Confidence            344566677886  8887 7777655   47787777764  4332  12222233448899999 8888888765 588


Q ss_pred             EEEEEcCC-CceEEEeeccCCCCCc----------eeEEEEecCCCceEEeeec-CCcEEEEeccccccccccceeecCC
Q 022590           78 VRLWNVQT-GICILIFAGAGGHRNE----------VLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDL  145 (294)
Q Consensus        78 i~vwd~~~-~~~~~~~~~~~~~~~~----------v~~l~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~  145 (294)
                      |.++-++. |........ -.|.+.          +....+.| ++++|++... --.|.+|++..+..........   
T Consensus       113 v~v~p~~~dG~l~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v---  187 (346)
T COG2706         113 VSVYPLQADGSLQPVVQV-VKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV---  187 (346)
T ss_pred             EEEEEcccCCccccceee-eecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCcccccccccc---
Confidence            99999865 332221111 124444          88899999 8877777642 2369999998643322111111   


Q ss_pred             CCCCCCceeeeceEEeecCCCceeeccee--cceEEEe-eCCCeEEEecCCCCCCCCCCCCceeeeeee------cCCCC
Q 022590          146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYP------VPECD  216 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~  216 (294)
                                       .....-+-+.|+  +++..+. --+++|.+|.......     ....++.+.      .....
T Consensus       188 -----------------~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g-----~~~~lQ~i~tlP~dF~g~~~  245 (346)
T COG2706         188 -----------------KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG-----KFEELQTIDTLPEDFTGTNW  245 (346)
T ss_pred             -----------------CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc-----eEEEeeeeccCccccCCCCc
Confidence                             122333445554  5555544 4588999998876411     111222211      11245


Q ss_pred             eeEEEEcccCCcceEEEEc-CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC-cEEEEecCC
Q 022590          217 IWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG-AIWRWDAIP  293 (294)
Q Consensus       217 i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-~i~vw~~~~  293 (294)
                      ...+.++++|  ++|.++. ....|.+|.+...............+...-+...|+|.|++|+++.+++ .|.+|.++.
T Consensus       246 ~aaIhis~dG--rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~  322 (346)
T COG2706         246 AAAIHISPDG--RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK  322 (346)
T ss_pred             eeEEEECCCC--CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence            6678899999  5666654 3457888888765433322222224445578999999999999998765 588888764

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=7.9e-12  Score=91.20  Aligned_cols=182  Identities=12%  Similarity=0.051  Sum_probs=128.8

Q ss_pred             EeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc
Q 022590           60 RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS  139 (294)
Q Consensus        60 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  139 (294)
                      +|+-+-..+-++.+.+-.|.+-|+++|-... |.    ..+.|.++.|.. .++++..|+.+|.|...|++...+.    
T Consensus       218 awSlni~gyhfs~G~sqqv~L~nvetg~~qs-f~----sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG----  287 (425)
T KOG2695|consen  218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQS-FQ----SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQG----  287 (425)
T ss_pred             hhhhccceeeecccccceeEEEEeecccccc-cc----cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccC----
Confidence            5654222223556667778888998876433 33    677899999997 7899999999999999999983110    


Q ss_pred             eeecCCCCCCCCceeeeceEEeecCCCceeecc---eecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC
Q 022590          140 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR---WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD  216 (294)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  216 (294)
                                     ..-......|...|+++.   |++++|++.+.+|+|++||.+.-+.      ...++.+.+|-..
T Consensus       288 ---------------~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~------~~~V~qYeGHvN~  346 (425)
T KOG2695|consen  288 ---------------NGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC------KKSVMQYEGHVNL  346 (425)
T ss_pred             ---------------CCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc------ccceeeeeccccc
Confidence                           111223345788888765   5689999999999999999997652      2246777777655


Q ss_pred             eeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590          217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY  272 (294)
Q Consensus       217 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~  272 (294)
                      -..+-+.-+.....+++++.|-..+||.++.+.......++.......+.+++|..
T Consensus       347 ~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  347 SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             ccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence            55555555554468889999999999999999865555555444444567777754

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.33  E-value=7e-11  Score=85.35  Aligned_cols=257  Identities=16%  Similarity=0.233  Sum_probs=158.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-----ccceecccC------------cceEEEEeCCC-CCc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHG------------DSINEIRTQPL-KPS   67 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~h~------------~~v~~~~~~~~-~~~   67 (294)
                      ...+.|+++.|.  ..|. ||++|...|.|.+|.-....     ....+++|.            ..|..+.|... +..
T Consensus        24 tead~ItaVefd--~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~  100 (460)
T COG5170          24 TEADKITAVEFD--ETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN  100 (460)
T ss_pred             cccceeeEEEec--cccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence            345788999997  7788 99999999999999865432     223455553            35788888653 334


Q ss_pred             eEEEeeCCCcEEEEEcCCCce-------------------E------------------EEeec---cCCCCCceeEEEE
Q 022590           68 LVVSASKDESVRLWNVQTGIC-------------------I------------------LIFAG---AGGHRNEVLSVDF  107 (294)
Q Consensus        68 ~l~s~~~dg~i~vwd~~~~~~-------------------~------------------~~~~~---~~~~~~~v~~l~~  107 (294)
                      .++..+.|.+|++|.+.....                   +                  .....   ...|.--|+++.|
T Consensus       101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~  180 (460)
T COG5170         101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF  180 (460)
T ss_pred             eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence            566778899999998754310                   0                  00000   0257777899999


Q ss_pred             ecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC-----Cceeeccee---cceEE
Q 022590          108 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-----NYVDCNRWL---GDFIL  179 (294)
Q Consensus       108 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~---~~~l~  179 (294)
                      +. +...++++ .|-.|.+|++.....                    ...+.....|.     .-|++..|+   .+.+.
T Consensus       181 Ns-D~et~lSa-DdLrINLWnl~i~D~--------------------sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm  238 (460)
T COG5170         181 NS-DKETLLSA-DDLRINLWNLEIIDG--------------------SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM  238 (460)
T ss_pred             cC-chheeeec-cceeeeeccccccCC--------------------ceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence            87 66666655 578899999886221                    11122223332     345666666   56777


Q ss_pred             EeeCCCeEEEecCCCCCCCCCC-----CC--ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCcee
Q 022590          180 SKSVDNEIVLWEPKMKEQSPGE-----GT--ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  252 (294)
Q Consensus       180 ~~~~d~~i~iwd~~~~~~~~~~-----~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  252 (294)
                      -.+..|.|++-|+|....-...     ..  ......+..-...|..+.|++++  +++++-+ --++++||++..+. +
T Consensus       239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng--ryIlsRd-yltvkiwDvnm~k~-p  314 (460)
T COG5170         239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG--RYILSRD-YLTVKIWDVNMAKN-P  314 (460)
T ss_pred             EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC--cEEEEec-cceEEEEecccccC-C
Confidence            7788999999999954321000     00  00011112223467788999999  5666554 46799999987653 2


Q ss_pred             eeecc-ccc---------cCCCe---EEEEEccCCCEEEEeccCCcEEEEec
Q 022590          253 IARLS-HAQ---------SKSPI---RQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       253 ~~~~~-~~~---------~~~~v---~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      +.+++ +..         ....|   -.+.||-|.+.+.+|+..+..-+|-+
T Consensus       315 ikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         315 IKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             ceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence            22221 100         01112   34678888888999988777666653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.32  E-value=1.2e-08  Score=78.24  Aligned_cols=119  Identities=19%  Similarity=0.202  Sum_probs=94.1

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCC-eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGING-IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      .|...|.-..+.  .+++ -++.|..|| .+-|+|..+++. +.+...-+.|.++..++ ++++++.+.....|.+.|++
T Consensus       357 ~~~~~VrY~r~~--~~~e-~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         357 GKKGGVRYRRIQ--VDPE-GDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             CCCCceEEEEEc--cCCc-ceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEec
Confidence            455666666666  4444 588899998 899999887765 45555678999999999 99999999999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC----cEEEEeccccc
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFW  133 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg----~i~~wd~~~~~  133 (294)
                      ++.....-+   ...+-|+.+.|+| +...+|-+--+|    .|+++|+...+
T Consensus       432 ngnv~~idk---S~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         432 NGNVRLIDK---SEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             CCCeeEecc---cccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCe
Confidence            998665444   3567899999999 888888876554    68999988743

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.32  E-value=1.8e-08  Score=72.35  Aligned_cols=231  Identities=13%  Similarity=0.178  Sum_probs=126.7

Q ss_pred             cCCCceEEEEeecCCeEEEEEcCCc--cccceeccc---CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEee
Q 022590           19 NVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGH---GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA   93 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~   93 (294)
                      +.+|+  +++.-.|..|.|-...+.  ..+.+.+..   .-.=+.++|+| |+.+||.+...|+|+++|+.. ..+..+.
T Consensus         6 ~~~Gk--~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-~~lf~I~   81 (282)
T PF15492_consen    6 SSDGK--LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMG-SELFVIP   81 (282)
T ss_pred             cCCCc--EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence            47887  445556778888776543  122222222   22347799999 999999999999999999954 4444443


Q ss_pred             cc----CCCCCceeEEEEecCC-----CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe-ec
Q 022590           94 GA----GGHRNEVLSVDFHPSD-----IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SV  163 (294)
Q Consensus        94 ~~----~~~~~~v~~l~~~~~~-----~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  163 (294)
                      ..    ..-...|..|.|.+..     ...|++-..+|.++-|-+..+...                .........+ ..
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q----------------~y~e~hsfsf~~~  145 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ----------------GYQENHSFSFSSH  145 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC----------------cceeeEEEEeccc
Confidence            21    1223567777776522     235667777888887776431100                0001112222 33


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE-
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI-  240 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i-  240 (294)
                      ++..|.++.|+  .++|++|+....      +.+.             -......+++-..-.+..+-..++..+|+.. 
T Consensus       146 yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-------------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~  206 (282)
T PF15492_consen  146 YPHGINSAVYHPKHRLLLVGGCEQN------QDGM-------------SKASSCGLTAWRILSDSPYYKQVTSSEDDITA  206 (282)
T ss_pred             CCCceeEEEEcCCCCEEEEeccCCC------CCcc-------------ccccccCceEEEEcCCCCcEEEccccCccccc
Confidence            57789999997  356666654322      0000             0011122222222222211112222222211 


Q ss_pred             -----EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          241 -----FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       241 -----~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                           .+|.+-+.+  ...+  .......|..|..||||+.||+...+|.|.+|++-
T Consensus       207 ~~~~~~~~~~~~~~--~fs~--~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  207 SSKRRGLLRIPSFK--FFSR--QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             cccccceeecccee--eeec--cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence                 223322211  1111  11345679999999999999999999999999973

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=2.3e-10  Score=92.52  Aligned_cols=191  Identities=15%  Similarity=0.187  Sum_probs=133.3

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      +.++|++++    ++ +++-|+.+|.|++++... .+ .+...|...      .- +|.++++|+.||+|.|-.+.+.+.
T Consensus        40 D~is~~av~----~~-~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   40 DAISCCAVH----DK-FFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hHHHHHHhh----cc-eeeeccccceEEEEecCC-cc-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCcc
Confidence            455666664    44 899999999999999653 33 333445443      33 889999999999999999999888


Q ss_pred             EEEeeccCCCCCceeEEEEecC----CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPS----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      ...+.    ...++.+++++|+    ....+++||.-| +.++.-+-...                    .. ...+..-
T Consensus       106 ~~~~d----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn--------------------k~-~v~l~~~  159 (846)
T KOG2066|consen  106 ITQYD----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN--------------------KD-SVVLSEG  159 (846)
T ss_pred             ceeEe----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC--------------------cc-ceeeecC
Confidence            87776    7789999999993    256799999888 77766543211                    11 1145556


Q ss_pred             CCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          165 SNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       165 ~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      .++|.++.|.|+++|-++.+| |++||....+.........   ...-++.-...+.|.++.   .|+.|= .-+|++..
T Consensus       160 eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~---~~~R~e~fpphl~W~~~~---~LVIGW-~d~v~i~~  231 (846)
T KOG2066|consen  160 EGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPS---QSVRPELFPPHLHWQDED---RLVIGW-GDSVKICS  231 (846)
T ss_pred             ccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCC---CCCCcccCCCceEecCCC---eEEEec-CCeEEEEE
Confidence            789999999999999988776 8999998776433222111   111112223457788775   466664 44688888


Q ss_pred             ccC
Q 022590          245 LQS  247 (294)
Q Consensus       245 ~~~  247 (294)
                      ++.
T Consensus       232 I~~  234 (846)
T KOG2066|consen  232 IKK  234 (846)
T ss_pred             Eec
Confidence            873

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.32  E-value=9.7e-11  Score=87.17  Aligned_cols=150  Identities=18%  Similarity=0.199  Sum_probs=104.1

Q ss_pred             cCCCceEEEEeecCCeEEEEEcCCccc----cceecccCcceEEEEeCCCCCc--eEEEeeCCCcEEEEEcCCCceEEEe
Q 022590           19 NVDGIPFLVAGGINGIIRVIDVSNEKL----HKSFVGHGDSINEIRTQPLKPS--LVVSASKDESVRLWNVQTGICILIF   92 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~----~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~   92 (294)
                      +++++ ++|.+..+....++++.....    ..... -...-+++.|...+..  ..-.++....+.+|....+.+...+
T Consensus        71 s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l  148 (390)
T KOG3914|consen   71 SDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL  148 (390)
T ss_pred             CCCce-EEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh
Confidence            47777 999998888887887765433    11111 1223344444442222  2223445566667766655444433


Q ss_pred             eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE-EeecCCCceeec
Q 022590           93 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF-IASVHSNYVDCN  171 (294)
Q Consensus        93 ~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~  171 (294)
                          ||-+.++.++|+| ++.+++++..|..|++-....                       ...+. -..+|...|..+
T Consensus       149 ----GhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa-----------------------~f~IesfclGH~eFVS~i  200 (390)
T KOG3914|consen  149 ----GHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPA-----------------------TFVIESFCLGHKEFVSTI  200 (390)
T ss_pred             ----hhhhhhheeeecC-CCCEEEEecCCceEEEEecCc-----------------------ccchhhhccccHhheeee
Confidence                6999999999999 889999999999999977665                       22222 235699999999


Q ss_pred             cee-cceEEEeeCCCeEEEecCCCCCCC
Q 022590          172 RWL-GDFILSKSVDNEIVLWEPKMKEQS  198 (294)
Q Consensus       172 ~~~-~~~l~~~~~d~~i~iwd~~~~~~~  198 (294)
                      +.- +..|++++.|+++++||+++++..
T Consensus       201 sl~~~~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  201 SLTDNYLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             eeccCceeeecCCCCcEEEEecccCCcc
Confidence            886 667899999999999999999864

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.3e-10  Score=87.99  Aligned_cols=255  Identities=14%  Similarity=0.064  Sum_probs=172.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC---ccccceecccCcceEEEEeCCCCCceEEEeeC-CCcEEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DESVRLW   81 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~vw   81 (294)
                      -|.+.|+.+...   ..+ ++.+++.||.++.|.-..   -+.++.+..|...|.+++.+. ++.++.|.+. |..++++
T Consensus         7 mhrd~i~hv~~t---ka~-fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen    7 MHRDVITHVFPT---KAK-FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             cccceeeeEeee---hhh-eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEE
Confidence            477788877754   344 999999999999998543   134566678999999999998 8889999777 9999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCC----ceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDI----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      |+++-..+..++.    ....-.+.|....+    .+-++.-.++.+.++|-....                     ...
T Consensus        82 DvEn~DminmiKL----~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~---------------------~q~  136 (558)
T KOG0882|consen   82 DVENFDMINMIKL----VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDF---------------------CQD  136 (558)
T ss_pred             Eeeccchhhhccc----ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCc---------------------Ccc
Confidence            9987766544432    11222233332122    223333467889999987621                     233


Q ss_pred             eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCC------CCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMK------EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                      .....-|..+|.++.++  ++.+++....|.|.-|.....      +..........+..+........++.|+|++  .
T Consensus       137 ~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g--~  214 (558)
T KOG0882|consen  137 GYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG--A  214 (558)
T ss_pred             ceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc--C
Confidence            44556688999999887  888888888999999998741      1111112222233333445667889999999  5


Q ss_pred             eEEEEcCCCeEEEEeccCCCceeeeecc----------------------------ccc-cCCCeEEEEEccCCCEEEEe
Q 022590          230 AAAIGNREGKIFVWELQSSPPVLIARLS----------------------------HAQ-SKSPIRQTAMSYDGSTILSC  280 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------------~~~-~~~~v~~~~~s~~~~~l~s~  280 (294)
                      .+.+-..|..|++++.++++......-.                            ... ....-+.+.|...|++|+-|
T Consensus       215 qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~  294 (558)
T KOG0882|consen  215 QISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYG  294 (558)
T ss_pred             cccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEee
Confidence            7888889999999999887532221100                            000 11234667888999999998


Q ss_pred             ccCCcEEEEecCC
Q 022590          281 CEDGAIWRWDAIP  293 (294)
Q Consensus       281 ~~dg~i~vw~~~~  293 (294)
                      +.=| |+|.++.+
T Consensus       295 t~~g-ikvin~~t  306 (558)
T KOG0882|consen  295 TILG-IKVINLDT  306 (558)
T ss_pred             ccee-EEEEEeec
Confidence            8776 77777654

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.31  E-value=1e-10  Score=95.90  Aligned_cols=187  Identities=12%  Similarity=0.121  Sum_probs=137.4

Q ss_pred             CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecC
Q 022590           65 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD  144 (294)
Q Consensus        65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  144 (294)
                      ++..++-|+.-..+..+|+++.+..+....   ..+.|.-|+.   ++.++.+|...|+|.+-|.++             
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v---~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s-------------  206 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV---SASGVTIMRY---NNRNLFCGDTRGTVFLRDPNS-------------  206 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeec---cCCceEEEEe---cCcEEEeecccceEEeecCCc-------------
Confidence            345567777777788899988877766552   3334655555   668899999999999999998             


Q ss_pred             CCCCCCCceeeeceEEeecCCCceeecceecceEEEeeC---------CCeEEEecCCCCCCCCCCCCceeeeeeecCCC
Q 022590          145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSV---------DNEIVLWEPKMKEQSPGEGTADILQKYPVPEC  215 (294)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  215 (294)
                                ...+..+..|.+.|..+...|+.|++++.         |..|++||+|+.+...         .++.+..
T Consensus       207 ----------~~~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~---------PI~~~~~  267 (1118)
T KOG1275|consen  207 ----------FETIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS---------PIQFPYG  267 (1118)
T ss_pred             ----------CceeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccC---------CcccccC
Confidence                      56788999999999999999999999986         4568999999765322         2222222


Q ss_pred             CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          216 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                       ..-+.|.|.-. ..+++.+..|...+-|..+.................+..++++++++.||.|..+|.|.+|.-
T Consensus       268 -P~flrf~Psl~-t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  268 -PQFLRFHPSLT-TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             -chhhhhccccc-ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence             24577888765 578888889999999943322111122111234456999999999999999999999999963

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=8.3e-12  Score=96.99  Aligned_cols=262  Identities=11%  Similarity=0.090  Sum_probs=157.0

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-------ccccceecccCcceEEEEeCCCCCceEEEeeC
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASK   74 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   74 (294)
                      |..-+|++.|..++--   ++.+-+++++.|.+|++|.+..       ..+..+++.|+.+|.++-|-. +.+++++  .
T Consensus       729 ~nf~GH~~~iRai~Ai---dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~S--c  802 (1034)
T KOG4190|consen  729 CNFTGHQEKIRAIAAI---DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIAS--C  802 (1034)
T ss_pred             ecccCcHHHhHHHHhc---ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeee--c
Confidence            4455788888887753   3333799999999999999853       235667889999999999988 6666654  5


Q ss_pred             CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC-CCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCc
Q 022590           75 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  152 (294)
Q Consensus        75 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (294)
                      ||-|.+||.-.+..+........| +.+..+..-|+ +..++..| +...+++++|.+...-..                
T Consensus       803 D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~----------------  865 (1034)
T KOG4190|consen  803 DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC----------------  865 (1034)
T ss_pred             cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeeccccccee----------------
Confidence            788999999888776644321112 22333333332 34444444 788999999999832211                


Q ss_pred             eeeeceEEeecCCCceeecce--ecceEEEeeCCCeEEEecCCCCCCCCCCCCce-------------eeeeeecCCC--
Q 022590          153 YVQFPVFIASVHSNYVDCNRW--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTAD-------------ILQKYPVPEC--  215 (294)
Q Consensus       153 ~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~--  215 (294)
                        ...+....+....+.+++.  .|++++++-..|.|.+.|.++++....-.+..             ..+....|.-  
T Consensus       866 --E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaV  943 (1034)
T KOG4190|consen  866 --ELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAV  943 (1034)
T ss_pred             --eEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEe
Confidence              1112222333445556655  39999999999999999999987432111100             0000001111  


Q ss_pred             ------CeeEEEEcccCC--------cceEEEEcCCCeEEEEeccCCCc--eeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590          216 ------DIWFIKFSCDFH--------YNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILS  279 (294)
Q Consensus       216 ------~i~~~~~~~~~~--------~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  279 (294)
                            .+..+...|...        +.-+++....+.+.+|--.....  ....++......+..++++--|-..-++.
T Consensus       944 nWhaldgimh~q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLa 1023 (1034)
T KOG4190|consen  944 NWHALDGIMHLQDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLA 1023 (1034)
T ss_pred             eehhcCCeeeeccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhc
Confidence                  111111111110        13566676677777774322110  01112222344467888888887777888


Q ss_pred             eccCCcEEE
Q 022590          280 CCEDGAIWR  288 (294)
Q Consensus       280 ~~~dg~i~v  288 (294)
                      |.+.|.|.+
T Consensus      1024 Gne~G~IaL 1032 (1034)
T KOG4190|consen 1024 GNEHGAIAL 1032 (1034)
T ss_pred             cCCCCceee
Confidence            888888875

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.29  E-value=2e-11  Score=85.79  Aligned_cols=136  Identities=18%  Similarity=0.296  Sum_probs=90.1

Q ss_pred             cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccc
Q 022590           54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW  133 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~  133 (294)
                      ..|++++-+|...+++++|+.||.+.+||.++......+.  ..|+.+++.+.|+|.++..|++++.||.+..||..+.-
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l--~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~  257 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL--KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF  257 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH--HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce
Confidence            4599999999777889999999999999998875433322  27999999999999999999999999999999988511


Q ss_pred             ccccccee-ecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEec
Q 022590          134 TYVEKSFT-WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE  191 (294)
Q Consensus       134 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd  191 (294)
                      ........ ....-+....+........+......|+++...|..+++|+.-+.|++++
T Consensus       258 l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  258 LSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence            11100000 00000000000000011112223345555555699999999988888875

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1.2e-09  Score=87.84  Aligned_cols=251  Identities=12%  Similarity=0.100  Sum_probs=163.2

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      .|++|++.|.-+.|+  ...+ .|-++..+|.|.+|-+-.+.-...+.  ...+.|.+++|.. +|..++..-.||.|.|
T Consensus        66 tLeGH~~sV~vvTWN--e~~Q-KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIV  141 (1189)
T KOG2041|consen   66 TLEGHNASVMVVTWN--ENNQ-KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIV  141 (1189)
T ss_pred             hhccCcceEEEEEec--cccc-cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEE
Confidence            578999999999997  4454 79999999999999998886554442  2456799999999 8999999999999988


Q ss_pred             EEcCCCceEEE-eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccc-cccccceeecCCCCCCCCceeeece
Q 022590           81 WNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW-TYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        81 wd~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      =.++..+.... ++     ......+.|++ +...++.+-.+|.+.++|....- ...........             .
T Consensus       142 GsvdGNRIwgKeLk-----g~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~-------------t  202 (1189)
T KOG2041|consen  142 GSVDGNRIWGKELK-----GQLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNG-------------T  202 (1189)
T ss_pred             Eeeccceecchhcc-----hheccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEee-------------e
Confidence            77754432211 11     12245788999 87878888889999999987621 11111110000             0


Q ss_pred             EEeecCCCceeecce----------ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCc
Q 022590          159 FIASVHSNYVDCNRW----------LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY  228 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~----------~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (294)
                      ..+...+..|..+.|          +...|+++...|.+.+..-.+...       +.+.   .....+....|+++|  
T Consensus       203 g~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~-------Pvv~---dtgm~~vgakWnh~G--  270 (1189)
T KOG2041|consen  203 GIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE-------PVVV---DTGMKIVGAKWNHNG--  270 (1189)
T ss_pred             eeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC-------CeEE---ecccEeecceecCCC--
Confidence            011112222344444          345789999999988865543321       1111   112557788999999  


Q ss_pred             ceEEEEcCCC---------eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCCC
Q 022590          229 NAAAIGNREG---------KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT  294 (294)
Q Consensus       229 ~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  294 (294)
                      .+|++++.+.         .|.+|..-..   ....++  .....|++++|-..|-.+|.+ .|+.|++=+++|+
T Consensus       271 ~vLAvcG~~~da~~~~d~n~v~Fysp~G~---i~gtlk--vpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~  339 (1189)
T KOG2041|consen  271 AVLAVCGNDSDADEPTDSNKVHFYSPYGH---IVGTLK--VPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPE  339 (1189)
T ss_pred             cEEEEccCcccccCccccceEEEeccchh---heEEEe--cCCceeeeeEEcCCceEEEEE-ecceEEEEeeccc
Confidence            5788776542         3444443222   222222  334679999998877777766 6888888777764

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.26  E-value=4.7e-09  Score=74.49  Aligned_cols=221  Identities=10%  Similarity=0.036  Sum_probs=137.3

Q ss_pred             ecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCC----CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590           30 GINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPL----KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  103 (294)
Q Consensus        30 ~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  103 (294)
                      +....+.+|+.-+..  .+..+       +.+.|.|.    ...+||.|+..|...+|...+.+....+..  .|...|.
T Consensus        49 ~~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd--~snn~v~  119 (344)
T KOG4532|consen   49 SKTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD--VSNNDVT  119 (344)
T ss_pred             cceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeec--ccccchh
Confidence            344567777765443  22222       34555552    345899999999999999987765444332  2444332


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc--eeeccee--cceEE
Q 022590          104 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY--VDCNRWL--GDFIL  179 (294)
Q Consensus       104 ~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~--~~~l~  179 (294)
                      -+.=.-+....+..++.|.++++.++.....                         ....|...  +..+.++  +.+++
T Consensus       120 ~~~r~cd~~~~~~i~sndht~k~~~~~~~s~-------------------------~~~~h~~~~~~ns~~~snd~~~~~  174 (344)
T KOG4532|consen  120 LVKRYCDLKFPLNIASNDHTGKTMVVSGDSN-------------------------KFAVHNQNLTQNSLHYSNDPSWGS  174 (344)
T ss_pred             hhhhhcccccceeeccCCcceeEEEEecCcc-------------------------cceeeccccceeeeEEcCCCceEE
Confidence            2211111223466778888888888775211                         11112222  4455554  78999


Q ss_pred             EeeCCCeEEEecCCCCCCCCCCCCceeee-eeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee-ecc
Q 022590          180 SKSVDNEIVLWEPKMKEQSPGEGTADILQ-KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-RLS  257 (294)
Q Consensus       180 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~  257 (294)
                      +.+....|..|.+......       ... ........-.+..|+...  ..+|++..||.+.|||++........ .-.
T Consensus       175 ~Vgds~~Vf~y~id~~sey-------~~~~~~a~t~D~gF~~S~s~~~--~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst  245 (344)
T KOG4532|consen  175 SVGDSRRVFRYAIDDESEY-------IENIYEAPTSDHGFYNSFSEND--LQFAVVFQDGTCAIYDVRNMATPMAEISST  245 (344)
T ss_pred             EecCCCcceEEEeCCccce-------eeeeEecccCCCceeeeeccCc--ceEEEEecCCcEEEEEecccccchhhhccc
Confidence            9999999999998765321       112 222233445567788777  68999999999999999986532222 222


Q ss_pred             ccccCCCeEEEEEccCCC--EEEEeccCCcEEEEecCC
Q 022590          258 HAQSKSPIRQTAMSYDGS--TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       258 ~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~vw~~~~  293 (294)
                      ...|.+.++.+.|++.|.  +|+..-.-+.+.+-|+++
T Consensus       246 rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  246 RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            446889999999998663  455554566788888764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.24  E-value=2.1e-08  Score=79.58  Aligned_cols=234  Identities=12%  Similarity=-0.001  Sum_probs=133.0

Q ss_pred             CceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCc
Q 022590           22 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE  101 (294)
Q Consensus        22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  101 (294)
                      +. .+++++.+|.|..+|..+|+.+..+............   ++..++.++.+|.+..+|..+|+.+.....    ...
T Consensus        65 ~~-~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~  136 (377)
T TIGR03300        65 GG-KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKELWRAKL----SSE  136 (377)
T ss_pred             CC-EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcEeeeecc----Cce
Confidence            44 6888889999999999999987766543322222332   345777888899999999999998876652    222


Q ss_pred             eeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEe
Q 022590          102 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK  181 (294)
Q Consensus       102 v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~  181 (294)
                      +.+.-..  .+..++.++.+|.+..||.++++...+....              .+.........    ....++.++.+
T Consensus       137 ~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~--------------~~~~~~~~~~s----p~~~~~~v~~~  196 (377)
T TIGR03300       137 VLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRV--------------TPALTLRGSAS----PVIADGGVLVG  196 (377)
T ss_pred             eecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccC--------------CCceeecCCCC----CEEECCEEEEE
Confidence            3221111  2335666778999999999875432211100              00000000011    11224567788


Q ss_pred             eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccccc
Q 022590          182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS  261 (294)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  261 (294)
                      ..++.+..+|+++++.............  ........+.-+|--....+++++.+|.++.+|.++++........  . 
T Consensus       197 ~~~g~v~ald~~tG~~~W~~~~~~~~g~--~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~-  271 (377)
T TIGR03300       197 FAGGKLVALDLQTGQPLWEQRVALPKGR--TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--S-  271 (377)
T ss_pred             CCCCEEEEEEccCCCEeeeeccccCCCC--CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--C-
Confidence            8889999999988764221100000000  0000000000111101136777888999999999988754433321  1 


Q ss_pred             CCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                         .....  ..+..++.++.||.++.+|..+
T Consensus       272 ---~~~p~--~~~~~vyv~~~~G~l~~~d~~t  298 (377)
T TIGR03300       272 ---YQGPA--VDDNRLYVTDADGVVVALDRRS  298 (377)
T ss_pred             ---ccCce--EeCCEEEEECCCCeEEEEECCC
Confidence               11122  2456788888899999888754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.24  E-value=2.2e-10  Score=80.69  Aligned_cols=201  Identities=14%  Similarity=0.233  Sum_probs=117.7

Q ss_pred             eEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeec---------cCCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590           56 INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG---------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  126 (294)
Q Consensus        56 v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~  126 (294)
                      ++.+.++.  ...|+++..++.+......++.+......         +..|.++-.+=+.+- -++-++++..||.+.+
T Consensus        39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAV  115 (319)
T ss_pred             EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccc-cCCceEecCCCceEEE
Confidence            66676764  45677887777777665544433322211         001222221111111 3456999999999999


Q ss_pred             EeccccccccccceeecCCCCCCCCceeeeceEEeecCCCcee-ecceecceEEEeeC-----CCeEEEecCCCCCCCCC
Q 022590          127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD-CNRWLGDFILSKSV-----DNEIVLWEPKMKEQSPG  200 (294)
Q Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~  200 (294)
                      ++.+.......+                 .+.    .|.+... +..-.++.+.++..     -+..+.|+++..+.   
T Consensus       116 ~s~~~~~~~~~~-----------------i~~----~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t---  171 (319)
T KOG4714|consen  116 FSTDKDLALMSR-----------------IPS----IHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT---  171 (319)
T ss_pred             EechHHHhhhhh-----------------ccc----ccccccccceeecccEEecCCcceEeeccceeeeccccccc---
Confidence            998862111100                 000    0111000 00001333333321     23455666653321   


Q ss_pred             CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEE
Q 022590          201 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILS  279 (294)
Q Consensus       201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s  279 (294)
                            +..-......+.+++-+|..+ ..+++|+.||.+-+||.+... .....+.  .|+.++..+.|+| ++..|++
T Consensus       172 ------~~~~~~~~~~v~~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~-~p~S~l~--ahk~~i~eV~FHpk~p~~Lft  241 (319)
T KOG4714|consen  172 ------LIPSKKALDAVTALCSHPAQQ-HLVCCGTDDGIVGLWDARNVA-MPVSLLK--AHKAEIWEVHFHPKNPEHLFT  241 (319)
T ss_pred             ------ccccccccccchhhhCCcccc-cEEEEecCCCeEEEEEccccc-chHHHHH--HhhhhhhheeccCCCchheeE
Confidence                  111111223488888888876 689999999999999999873 2333333  7889999999999 5679999


Q ss_pred             eccCCcEEEEecCC
Q 022590          280 CCEDGAIWRWDAIP  293 (294)
Q Consensus       280 ~~~dg~i~vw~~~~  293 (294)
                      +++||.+.-||..+
T Consensus       242 ~sedGslw~wdas~  255 (319)
T KOG4714|consen  242 CSEDGSLWHWDAST  255 (319)
T ss_pred             ecCCCcEEEEcCCC
Confidence            99999999999764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.24  E-value=1.5e-08  Score=72.73  Aligned_cols=189  Identities=17%  Similarity=0.196  Sum_probs=109.9

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc-------cCcceEEEEeCCCC-----CceEEEeeCCCcE
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-------HGDSINEIRTQPLK-----PSLVVSASKDESV   78 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------h~~~v~~~~~~~~~-----~~~l~s~~~dg~i   78 (294)
                      =..++|+  ||+. +||.+...|+|+++|+.... +..+..       -..+|..|.|.+..     ...|+.-..+|.+
T Consensus        46 WRkl~WS--pD~t-lLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L  121 (282)
T PF15492_consen   46 WRKLAWS--PDCT-LLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL  121 (282)
T ss_pred             heEEEEC--CCCc-EEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence            3568897  9998 99999999999999986432 222221       23567778776532     2356667778888


Q ss_pred             EEEEcCCC-----ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc-----------EEEEeccccccccccceee
Q 022590           79 RLWNVQTG-----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT-----------VKIWSMKEFWTYVEKSFTW  142 (294)
Q Consensus        79 ~vwd~~~~-----~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~-----------i~~wd~~~~~~~~~~~~~~  142 (294)
                      +-|-+..+     +....|.....+...|.++.++| ..++|++||....           +..|.+-..          
T Consensus       122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~----------  190 (282)
T PF15492_consen  122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD----------  190 (282)
T ss_pred             eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCccccccccCceEEEEcCC----------
Confidence            87776322     23344443334577899999999 6666666653221           222222221          


Q ss_pred             cCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEE
Q 022590          143 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF  222 (294)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  222 (294)
                                   .|....      +.  .+..+.-......+..++-.++            ...........|..|..
T Consensus       191 -------------~Pyyk~------v~--~~~~~~~~~~~~~~~~~~~~~~------------~fs~~~~~~d~i~kmSl  237 (282)
T PF15492_consen  191 -------------SPYYKQ------VT--SSEDDITASSKRRGLLRIPSFK------------FFSRQGQEQDGIFKMSL  237 (282)
T ss_pred             -------------CCcEEE------cc--ccCccccccccccceeecccee------------eeeccccCCCceEEEEE
Confidence                         010000      00  0001111111111222211111            11222334567999999


Q ss_pred             cccCCcceEEEEcCCCeEEEEeccCCC
Q 022590          223 SCDFHYNAAAIGNREGKIFVWELQSSP  249 (294)
Q Consensus       223 ~~~~~~~~l~~~~~dg~i~i~d~~~~~  249 (294)
                      ||++  ..|++...+|.|.+|++.+-.
T Consensus       238 SPdg--~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  238 SPDG--SLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             CCCC--CEEEEEEcCCeEEEEecCcch
Confidence            9999  699999999999999998765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.23  E-value=2e-07  Score=72.78  Aligned_cols=208  Identities=15%  Similarity=0.174  Sum_probs=121.3

Q ss_pred             ecCCCceEEEEee-cCCeEEEEEcCC-ccccce---ec----------ccCcceEEEEeCCCCCceEEEee-CCCcEEEE
Q 022590           18 CNVDGIPFLVAGG-INGIIRVIDVSN-EKLHKS---FV----------GHGDSINEIRTQPLKPSLVVSAS-KDESVRLW   81 (294)
Q Consensus        18 ~~~~~~~~l~~~~-~dg~i~iw~~~~-~~~~~~---~~----------~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vw   81 (294)
                      .+|+++ +|+++. .+|.|.++++.. +.....   +.          .......++.++| +++++++.. ....|.+|
T Consensus        94 ~~~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   94 VDPDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             ECTTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEE
T ss_pred             EecCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEE
Confidence            348998 665554 689999999976 332221   11          1124578999999 777666653 34579999


Q ss_pred             EcCCCc--eE--EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           82 NVQTGI--CI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        82 d~~~~~--~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      ++....  ..  ..+..  ........+.|+|+....+++...++.|.++++................+..         
T Consensus       172 ~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~---------  240 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG---------  240 (345)
T ss_dssp             EE-TTS-TEEEEEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT---------
T ss_pred             EEeCCCceEEEeecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc---------
Confidence            997654  32  22221  3556789999999434445666678899999998321111111000000000         


Q ss_pred             eEEeecCCCceeeccee--cceEEEee-CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          158 VFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                          .........+.++  +++|+++. ..+.|.+|++.....     ....+...+........+.++|+++ .++++.
T Consensus       241 ----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-----~l~~~~~~~~~G~~Pr~~~~s~~g~-~l~Va~  310 (345)
T PF10282_consen  241 ----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-----TLTLVQTVPTGGKFPRHFAFSPDGR-YLYVAN  310 (345)
T ss_dssp             ----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-----TEEEEEEEEESSSSEEEEEE-TTSS-EEEEEE
T ss_pred             ----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-----ceEEEEEEeCCCCCccEEEEeCCCC-EEEEEe
Confidence                0001134445554  77766654 567899999943211     3345556665556688999999995 244445


Q ss_pred             cCCCeEEEEeccCC
Q 022590          235 NREGKIFVWELQSS  248 (294)
Q Consensus       235 ~~dg~i~i~d~~~~  248 (294)
                      ..++.|.+|+++..
T Consensus       311 ~~s~~v~vf~~d~~  324 (345)
T PF10282_consen  311 QDSNTVSVFDIDPD  324 (345)
T ss_dssp             TTTTEEEEEEEETT
T ss_pred             cCCCeEEEEEEeCC
Confidence            57789999988543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.21  E-value=3.5e-08  Score=78.30  Aligned_cols=229  Identities=12%  Similarity=0.051  Sum_probs=133.7

Q ss_pred             CCceEEEEeecCCeEEEEEcCCccccceecccCcceEE-EEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC
Q 022590           21 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINE-IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR   99 (294)
Q Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~   99 (294)
                      ++. .++.++.+|.+..+|..+|+.+...... ..+.+ ...   .+..++.++.+|.+..||.++|+.+..+..   ..
T Consensus       104 ~~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~---~~  175 (377)
T TIGR03300       104 DGG-LVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSR---VT  175 (377)
T ss_pred             cCC-EEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEcc---CC
Confidence            344 6888889999999999999887665532 22222 112   234667778899999999999998877652   11


Q ss_pred             Cce-----eEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee
Q 022590          100 NEV-----LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL  174 (294)
Q Consensus       100 ~~v-----~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (294)
                      ...     ......  + ..++.+..+|.+..+|.+++....+.......  ..   .    ......   .........
T Consensus       176 ~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~--g~---~----~~~~~~---~~~~~p~~~  240 (377)
T TIGR03300       176 PALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPK--GR---T----ELERLV---DVDGDPVVD  240 (377)
T ss_pred             CceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCC--CC---C----chhhhh---ccCCccEEE
Confidence            111     111222  3 35777888899999999875432211110000  00   0    000000   000111123


Q ss_pred             cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590          175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  254 (294)
Q Consensus       175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  254 (294)
                      ++.++.++.+|.+..||.++++.         +-.....  ......  ..+  ..+++++.+|.+..+|..+++.+...
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~---------~W~~~~~--~~~~p~--~~~--~~vyv~~~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRV---------LWKRDAS--SYQGPA--VDD--NRLYVTDADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcE---------EEeeccC--CccCce--EeC--CEEEEECCCCeEEEEECCCCcEEEcc
Confidence            67888888999999999988763         2111111  111111  223  46788889999999999988744332


Q ss_pred             -eccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          255 -RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       255 -~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                       .+..    ....+...  .+..|++++.+|.|+++|.++
T Consensus       306 ~~~~~----~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t  339 (377)
T TIGR03300       306 DELKY----RQLTAPAV--VGGYLVVGDFEGYLHWLSRED  339 (377)
T ss_pred             ccccC----CccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence             1111    11122222  456888999999999999764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.21  E-value=3.9e-08  Score=85.30  Aligned_cols=261  Identities=14%  Similarity=0.140  Sum_probs=152.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCC--eEEEEEcCCcc---ccceec-----ccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGING--IIRVIDVSNEK---LHKSFV-----GHGDSINEIRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~---~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~~~dg~i   78 (294)
                      ..+...+|....+.- +++.+....  .|.+-......   .+..+.     ...+.|.++.+.+ +...++.+..+|.|
T Consensus        22 ~~~~~~~~d~~sd~i-~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~-d~~~l~~~~~~Gdi   99 (928)
T PF04762_consen   22 LPITATAFDSDSDSI-YFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLA-DSESLCIALASGDI   99 (928)
T ss_pred             cccceEEEecCCCeE-EEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEecc-CCCcEEEEECCceE
Confidence            456777777433332 444444433  24443332222   222232     2346899999999 77788889999999


Q ss_pred             EEE----EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc-------------ee
Q 022590           79 RLW----NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS-------------FT  141 (294)
Q Consensus        79 ~vw----d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------~~  141 (294)
                      .+.    +..+...-. .-   .-...|.+++|+| ++.+|+....++++.+-. +++....+..             +.
T Consensus       100 ~~~~~~~~~~~~~~E~-VG---~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVG  173 (928)
T PF04762_consen  100 ILVREDPDPDEDEIEI-VG---SVDSGILAASWSP-DEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVG  173 (928)
T ss_pred             EEEEccCCCCCceeEE-EE---EEcCcEEEEEECC-CcCEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeec
Confidence            999    544433222 11   2567899999999 888899988888887764 2222211111             11


Q ss_pred             ecCCCCCCCCceee-------ec------eEEeecCCCceeeccee--cceEEEeeC---C---CeEEEecCCCCCCCCC
Q 022590          142 WTDLPSKFPTKYVQ-------FP------VFIASVHSNYVDCNRWL--GDFILSKSV---D---NEIVLWEPKMKEQSPG  200 (294)
Q Consensus       142 ~~~~~~~~~~~~~~-------~~------~~~~~~~~~~i~~~~~~--~~~l~~~~~---d---~~i~iwd~~~~~~~~~  200 (294)
                      |......+.....+       .|      ...+. ..+.-..++|-  |.+|++.+.   .   +.+|+|+-. +..   
T Consensus       174 WGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L---  248 (928)
T PF04762_consen  174 WGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GEL---  248 (928)
T ss_pred             cCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceE---
Confidence            11111111111100       11      11122 44456677784  889998774   2   579999975 321   


Q ss_pred             CCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC---CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEE
Q 022590          201 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI  277 (294)
Q Consensus       201 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  277 (294)
                            ...-....+--..++|.|.|  +++|+...   ...|.+|.-+..+ .....++.......|..++|++|+..|
T Consensus       249 ------~stSE~v~gLe~~l~WrPsG--~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~~~~v~~l~Wn~ds~iL  319 (928)
T PF04762_consen  249 ------QSTSEPVDGLEGALSWRPSG--NLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPEEEKVIELAWNSDSEIL  319 (928)
T ss_pred             ------EeccccCCCccCCccCCCCC--CEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCCCceeeEEEECCCCCEE
Confidence                  11111111222357999999  57777653   3557777755432 122333333455689999999999999


Q ss_pred             EEeccCCcEEEEecC
Q 022590          278 LSCCEDGAIWRWDAI  292 (294)
Q Consensus       278 ~s~~~dg~i~vw~~~  292 (294)
                      |..-.|. |.+|-..
T Consensus       320 Av~~~~~-vqLWt~~  333 (928)
T PF04762_consen  320 AVWLEDR-VQLWTRS  333 (928)
T ss_pred             EEEecCC-ceEEEee
Confidence            9987665 9999754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=3.4e-07  Score=68.03  Aligned_cols=242  Identities=12%  Similarity=0.135  Sum_probs=140.0

Q ss_pred             CCeEEEEEcCCcc--c-cceecccCcceEEEEeCCCCCceEEEeeC---CCcEEEEEcCC--CceEEEeeccCCCCCcee
Q 022590           32 NGIIRVIDVSNEK--L-HKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQT--GICILIFAGAGGHRNEVL  103 (294)
Q Consensus        32 dg~i~iw~~~~~~--~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~  103 (294)
                      +.-|++|++++..  . ...+-.+.+.++-|+|+| +.+.|.++..   +|.|..|.++.  |+.. .+........+..
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~~~~~g~~p~   92 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNRQTLPGSPPC   92 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEE-EeeccccCCCCCe
Confidence            4679999997432  1 112234667889999999 8778887754   47788887764  4432 2221111233448


Q ss_pred             EEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEE
Q 022590          104 SVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  180 (294)
Q Consensus       104 ~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  180 (294)
                      .+++++ ++++++++. .-|.|.++-++......... .........+.      ......|   +....+.  ++++++
T Consensus        93 yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v-~~~~h~g~~p~------~rQ~~~h---~H~a~~tP~~~~l~v  161 (346)
T COG2706          93 YVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVV-QVVKHTGSGPH------ERQESPH---VHSANFTPDGRYLVV  161 (346)
T ss_pred             EEEECC-CCCEEEEEEccCceEEEEEcccCCccccce-eeeecCCCCCC------ccccCCc---cceeeeCCCCCEEEE
Confidence            899999 777777765 45889999997732111110 00000000000      0000001   3333343  667776


Q ss_pred             eeC-CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC--Cceeeeecc
Q 022590          181 KSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS--PPVLIARLS  257 (294)
Q Consensus       181 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~  257 (294)
                      ..- ..+|.+|++..+......     ...+ .+......+.|+|+++..|+ +.-.+++|.+|..+..  +...+..+.
T Consensus       162 ~DLG~Dri~~y~~~dg~L~~~~-----~~~v-~~G~GPRHi~FHpn~k~aY~-v~EL~stV~v~~y~~~~g~~~~lQ~i~  234 (346)
T COG2706         162 PDLGTDRIFLYDLDDGKLTPAD-----PAEV-KPGAGPRHIVFHPNGKYAYL-VNELNSTVDVLEYNPAVGKFEELQTID  234 (346)
T ss_pred             eecCCceEEEEEcccCcccccc-----cccc-CCCCCcceEEEcCCCcEEEE-EeccCCEEEEEEEcCCCceEEEeeeec
Confidence            653 357999999966542211     1111 44567889999999974333 3446889999999874  222222221


Q ss_pred             ----ccccCCCeEEEEEccCCCEEEEecc-CCcEEEEecCC
Q 022590          258 ----HAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAIP  293 (294)
Q Consensus       258 ----~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~~  293 (294)
                          .-.......++.++|||++|.++.. ...|-+|.+.+
T Consensus       235 tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         235 TLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             cCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence                1122345778999999999988742 23577776653

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.20  E-value=6.3e-08  Score=85.50  Aligned_cols=229  Identities=13%  Similarity=0.116  Sum_probs=129.1

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc-----------------CcceEEEEeCCCCCceEEEee
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-----------------GDSINEIRTQPLKPSLVVSAS   73 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h-----------------~~~v~~~~~~~~~~~~l~s~~   73 (294)
                      -..+++.  ++++.+.++-..++.|+++|..++.. .++.+-                 -.....++++|.++.++++.+
T Consensus       626 P~GIavd--~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~  702 (1057)
T PLN02919        626 PQGLAYN--AKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA  702 (1057)
T ss_pred             CcEEEEe--CCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence            3566665  66662344445567899999876542 222110                 113467999996677778888


Q ss_pred             CCCcEEEEEcCCCceEEEeecc------CC------CCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccccee
Q 022590           74 KDESVRLWNVQTGICILIFAGA------GG------HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFT  141 (294)
Q Consensus        74 ~dg~i~vwd~~~~~~~~~~~~~------~~------~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  141 (294)
                      .++.|++||..++.... +...      .+      .-.....|+++|+++.++++-+.++.|++||+.++.....  ..
T Consensus       703 ~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~--~g  779 (1057)
T PLN02919        703 GQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLL--AG  779 (1057)
T ss_pred             CCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEE--Ee
Confidence            88999999997765432 2110      01      1124577999993344666777789999999886432100  00


Q ss_pred             ecCC-CCC-CCCcee-eeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCcee----eeeeec
Q 022590          142 WTDL-PSK-FPTKYV-QFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADI----LQKYPV  212 (294)
Q Consensus       142 ~~~~-~~~-~~~~~~-~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~  212 (294)
                      .... +.. ...... .........|   ...++++  |+++++-..++.|++||..++...........    -.....
T Consensus       780 g~~~~~~~l~~fG~~dG~g~~~~l~~---P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a  856 (1057)
T PLN02919        780 GDPTFSDNLFKFGDHDGVGSEVLLQH---PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKA  856 (1057)
T ss_pred             cccccCcccccccCCCCchhhhhccC---CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccc
Confidence            0000 000 000000 0000001112   2345554  67888888899999999976542100000000    000111


Q ss_pred             CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc
Q 022590          213 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  250 (294)
Q Consensus       213 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  250 (294)
                      .-.....+++++++  .++++-+.++.|++||+++.+.
T Consensus       857 ~l~~P~GIavd~dG--~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        857 QLSEPAGLALGENG--RLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ccCCceEEEEeCCC--CEEEEECCCCEEEEEECCCCcc
Confidence            12346789999998  5788888999999999988753

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.19  E-value=6e-08  Score=71.85  Aligned_cols=216  Identities=19%  Similarity=0.158  Sum_probs=127.3

Q ss_pred             CCeEEEEEcCCccccceecccC--cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590           32 NGIIRVIDVSNEKLHKSFVGHG--DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  109 (294)
Q Consensus        32 dg~i~iw~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~  109 (294)
                      +|.|..||..+++.+....--.  ....+... + ++..+++++.++.|..||..+|+.+..+..    ..++...... 
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~----~~~~~~~~~~-   74 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL----PGPISGAPVV-   74 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC----SSCGGSGEEE-
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec----cccccceeee-
Confidence            6899999999998887775311  11121122 2 345677778999999999999999888773    2222111222 


Q ss_pred             CCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC-CceeecceecceEEEeeCCCeEE
Q 022590          110 SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWLGDFILSKSVDNEIV  188 (294)
Q Consensus       110 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~l~~~~~d~~i~  188 (294)
                       .+..++++..++.++.+|..++.......                  ........ .......+.++.++.+..++.|.
T Consensus        75 -~~~~v~v~~~~~~l~~~d~~tG~~~W~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  135 (238)
T PF13360_consen   75 -DGGRVYVGTSDGSLYALDAKTGKVLWSIY------------------LTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLV  135 (238)
T ss_dssp             -ETTEEEEEETTSEEEEEETTTSCEEEEEE------------------E-SSCTCSTB--SEEEEETTEEEEEETCSEEE
T ss_pred             -cccccccccceeeeEecccCCcceeeeec------------------cccccccccccccCceEecCEEEEEeccCcEE
Confidence             33446666688899999988854321100                  00000000 11122333478888888899999


Q ss_pred             EecCCCCCCCCCCCCceeeeeeecCCCC----------eeEEEEcccCCcceEEEEcCCCe-EEEEeccCCCceeeeecc
Q 022590          189 LWEPKMKEQSPGEGTADILQKYPVPECD----------IWFIKFSCDFHYNAAAIGNREGK-IFVWELQSSPPVLIARLS  257 (294)
Q Consensus       189 iwd~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~  257 (294)
                      .+|+++++         .+-..+.....          +..-....++   .++.+..++. +.+ |+.+++...  ...
T Consensus       136 ~~d~~tG~---------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~g~~~~~-d~~tg~~~w--~~~  200 (238)
T PF13360_consen  136 ALDPKTGK---------LLWKYPVGEPRGSSPISSFSDINGSPVISDG---RVYVSSGDGRVVAV-DLATGEKLW--SKP  200 (238)
T ss_dssp             EEETTTTE---------EEEEEESSTT-SS--EEEETTEEEEEECCTT---EEEEECCTSSEEEE-ETTTTEEEE--EEC
T ss_pred             EEecCCCc---------EEEEeecCCCCCCcceeeecccccceEEECC---EEEEEcCCCeEEEE-ECCCCCEEE--Eec
Confidence            99999886         33333332211          1111122222   5666666775 555 999986433  211


Q ss_pred             ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          258 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       258 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .    ..+.. ...+++..|+.++.++.|..||+++
T Consensus       201 ~----~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  201 I----SGIYS-LPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             S----S-ECE-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred             C----CCccC-CceeeCCEEEEEeCCCEEEEEECCC
Confidence            1    12222 1346777888888999999999876

...

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.17  E-value=2.4e-07  Score=71.02  Aligned_cols=225  Identities=13%  Similarity=0.051  Sum_probs=125.8

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEe-e---------CCCcEEEEEcCCCceEEEeeccCC----C
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-S---------KDESVRLWNVQTGICILIFAGAGG----H   98 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~---------~dg~i~vwd~~~~~~~~~~~~~~~----~   98 (294)
                      ++|.+.|.++++.+.++..-..+- .+ ++| +++.|+.+ +         .+..|.+||..+.+.+..+.....    .
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence            899999999999888887543333 34 999 66655555 4         588999999999999988874211    1


Q ss_pred             CCceeEEEEecCCCceEEeee-c-CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecc
Q 022590           99 RNEVLSVDFHPSDIYRIASCG-M-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD  176 (294)
Q Consensus        99 ~~~v~~l~~~~~~~~~l~~~~-~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  176 (294)
                      ......++++| ++++|++.. . +..+.+.|+.+.+.                       +..... ++...-...+..
T Consensus       104 ~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kv-----------------------v~ei~v-p~~~~vy~t~e~  158 (352)
T TIGR02658       104 GTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAF-----------------------VRMMDV-PDCYHIFPTAND  158 (352)
T ss_pred             cCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcE-----------------------EEEEeC-CCCcEEEEecCC
Confidence            22345789999 777777654 3 78999999998432                       222221 111111111122


Q ss_pred             eEEEeeCCCeEEEecCCCCCCCCCCCCceeeee--eecCCCCeeEEEEcc-cCCcceEEEEcCCCeEEEEeccCCCceee
Q 022590          177 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQK--YPVPECDIWFIKFSC-DFHYNAAAIGNREGKIFVWELQSSPPVLI  253 (294)
Q Consensus       177 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  253 (294)
                      .+.+-+.||......+....... ......+..  ......+    .|.+ ++  .++....+ |.|.+.|+...+....
T Consensus       159 ~~~~~~~Dg~~~~v~~d~~g~~~-~~~~~vf~~~~~~v~~rP----~~~~~dg--~~~~vs~e-G~V~~id~~~~~~~~~  230 (352)
T TIGR02658       159 TFFMHCRDGSLAKVGYGTKGNPK-IKPTEVFHPEDEYLINHP----AYSNKSG--RLVWPTYT-GKIFQIDLSSGDAKFL  230 (352)
T ss_pred             ccEEEeecCceEEEEecCCCceE-EeeeeeecCCccccccCC----ceEcCCC--cEEEEecC-CeEEEEecCCCcceec
Confidence            22233445544443333221100 000000000  0000111    3455 55  45666655 9999999765432222


Q ss_pred             eecc---c-----cccCCCeEEEEEccCCCEEEEec----------cCCcEEEEecCC
Q 022590          254 ARLS---H-----AQSKSPIRQTAMSYDGSTILSCC----------EDGAIWRWDAIP  293 (294)
Q Consensus       254 ~~~~---~-----~~~~~~v~~~~~s~~~~~l~s~~----------~dg~i~vw~~~~  293 (294)
                      ..+.   .     .-..+.+.-++++|+++.++...          ..+.|.++|.++
T Consensus       231 ~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t  288 (352)
T TIGR02658       231 PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT  288 (352)
T ss_pred             ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence            2211   0     11233445599999999888742          124688888764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.17  E-value=2.4e-11  Score=95.83  Aligned_cols=209  Identities=14%  Similarity=0.196  Sum_probs=135.4

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEee----CCCcEEEEE
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSAS----KDESVRLWN   82 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----~dg~i~vwd   82 (294)
                      .-+.|+++..+.+.. ++++|..+|.|.+-......  ......+|....++++|++.|.+.||+|-    .|..+.|||
T Consensus        57 qy~kcva~~y~~d~c-IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRC-ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCceeehhhcCCchh-hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            356788888666644 89999999999998875432  22345678899999999998888888873    467799999


Q ss_pred             cCCC--ceEE--EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           83 VQTG--ICIL--IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        83 ~~~~--~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      +.++  .+..  .|..  +......+++|.. +..++.+|.....++++|++.......                    .
T Consensus       136 i~s~ltvPke~~~fs~--~~l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~--------------------s  192 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSS--STLDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVS--------------------S  192 (783)
T ss_pred             cccccCCCcccccccc--ccccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhh--------------------h
Confidence            9877  2221  2221  2334566899985 888899999999999999996211100                    0


Q ss_pred             EEeecCCCceeecceecceEEEeeCCCeEEEec-CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          159 FIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE-PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      ...+.|. .++---|.++++++-. ||.|.+|| .+.-+...    ...+.........+..++|+|...+...+..-..
T Consensus       193 vnTk~vq-G~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl----~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS  266 (783)
T KOG1008|consen  193 VNTKYVQ-GITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL----QIILRNENKKPKQLFALAYCPTRTGLLAVLSRDS  266 (783)
T ss_pred             hhhhhcc-cceecCCCCCceeccc-cCceeeccchhhhccHH----HHHhhCCCCcccceeeEEeccCCcchhhhhccCc
Confidence            0001111 1222233578888755 99999999 44333210    0001111111235888999998875555555667


Q ss_pred             CeEEEEeccC
Q 022590          238 GKIFVWELQS  247 (294)
Q Consensus       238 g~i~i~d~~~  247 (294)
                      ++|+++|+..
T Consensus       267 ~tIrlydi~~  276 (783)
T KOG1008|consen  267 ITIRLYDICV  276 (783)
T ss_pred             ceEEEecccc
Confidence            8899999854

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.17  E-value=1.7e-07  Score=81.48  Aligned_cols=244  Identities=12%  Similarity=0.156  Sum_probs=152.1

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEE----EcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVI----DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      ..+.|.++.+-  ++.. .++.+..+|.|.+.    +..+.. +.....-...|.+++||| |..+|+..+.++++.+.+
T Consensus        74 ~~~~ivs~~yl--~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSP-D~Ella~vT~~~~l~~mt  148 (928)
T PF04762_consen   74 PNDKIVSFQYL--ADSE-SLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSP-DEELLALVTGEGNLLLMT  148 (928)
T ss_pred             CCCcEEEEEec--cCCC-cEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECC-CcCEEEEEeCCCEEEEEe
Confidence            34577777776  7776 78888999999999    443332 223334567899999999 889999999899887764


Q ss_pred             cCCCceE------------------------EEeeccCC---------------------CCCceeEEEEecCCCceEEe
Q 022590           83 VQTGICI------------------------LIFAGAGG---------------------HRNEVLSVDFHPSDIYRIAS  117 (294)
Q Consensus        83 ~~~~~~~------------------------~~~~~~~~---------------------~~~~v~~l~~~~~~~~~l~~  117 (294)
                      - +.+.+                        ..|++..+                     +...-..|+|-. ||.++|+
T Consensus       149 ~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAV  226 (928)
T PF04762_consen  149 R-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAV  226 (928)
T ss_pred             c-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEE
Confidence            2 11111                        11111000                     222446788987 8999998


Q ss_pred             eec---C---CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce--ecceEEEeeC---CCe
Q 022590          118 CGM---D---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDFILSKSV---DNE  186 (294)
Q Consensus       118 ~~~---d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~---d~~  186 (294)
                      .+.   .   ..++||+-...-                        ......-.+--.+++|  +|+++++.-.   ...
T Consensus       227 ss~~~~~~~~R~iRVy~ReG~L------------------------~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~  282 (928)
T PF04762_consen  227 SSVEPETGSRRVIRVYSREGEL------------------------QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHD  282 (928)
T ss_pred             EEEEcCCCceeEEEEECCCceE------------------------EeccccCCCccCCccCCCCCCEEEEEEEcCCCcE
Confidence            875   3   468888876310                        0001111111234566  3888887654   345


Q ss_pred             EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeE
Q 022590          187 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR  266 (294)
Q Consensus       187 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  266 (294)
                      |.+|.-+..+      +....-.+......+..+.|++++  .+||.-..|. |.+|-..+...-....+.... ...+.
T Consensus       283 VvFfErNGLr------hgeF~l~~~~~~~~v~~l~Wn~ds--~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~  352 (928)
T PF04762_consen  283 VVFFERNGLR------HGEFTLRFDPEEEKVIELAWNSDS--EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVN  352 (928)
T ss_pred             EEEEecCCcE------eeeEecCCCCCCceeeEEEECCCC--CEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCC
Confidence            7777755433      111111122345678999999999  5888876555 999999988654444444322 23455


Q ss_pred             EEEEccCC-CEEEEeccCCcEEEEec
Q 022590          267 QTAMSYDG-STILSCCEDGAIWRWDA  291 (294)
Q Consensus       267 ~~~~s~~~-~~l~s~~~dg~i~vw~~  291 (294)
                      .+.|+|.. ..|...+.+|.+..+++
T Consensus       353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~  378 (928)
T PF04762_consen  353 FVKWDPEKPLRLHVLTSNGQYEIYDF  378 (928)
T ss_pred             ceEECCCCCCEEEEEecCCcEEEEEE
Confidence            59999964 45777777677766654

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=9.3e-10  Score=83.45  Aligned_cols=210  Identities=15%  Similarity=0.093  Sum_probs=145.1

Q ss_pred             ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec-CCcEEEEec
Q 022590           51 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSM  129 (294)
Q Consensus        51 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~wd~  129 (294)
                      .|.+.|+.+.-..  .+++.+++.||.++.|--..-.-+.....+..|...|.+++.+- ++.++.+.+. |..++++|+
T Consensus         7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEe
Confidence            3788888877654  67999999999999998754333333333346889999999997 8888999777 999999999


Q ss_pred             cccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceec----ceEEEeeCCCeEEEecCCCCCCCCCCCCce
Q 022590          130 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG----DFILSKSVDNEIVLWEPKMKEQSPGEGTAD  205 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  205 (294)
                      .........                     .+..-++.+..+.-.|    ..-++.-.++.+.++|-....+       +
T Consensus        84 En~Dminmi---------------------KL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-------q  135 (558)
T KOG0882|consen   84 ENFDMINMI---------------------KLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-------Q  135 (558)
T ss_pred             eccchhhhc---------------------ccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcC-------c
Confidence            874321110                     1111111111111112    2333445678999999886542       2


Q ss_pred             eeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC-C---Cceeeeec-------cccccCCCeEEEEEccCC
Q 022590          206 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-S---PPVLIARL-------SHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       206 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~---~~~~~~~~-------~~~~~~~~v~~~~~s~~~  274 (294)
                      .......|..+|..+.+.+.+  ..+++....|.|.-|.... .   +......+       .....+....++.|+|+|
T Consensus       136 ~~~fkklH~sPV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g  213 (558)
T KOG0882|consen  136 DGYFKKLHFSPVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG  213 (558)
T ss_pred             cceecccccCceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc
Confidence            344456678899999999998  4788899999999999873 1   10011111       122445678999999999


Q ss_pred             CEEEEeccCCcEEEEecCC
Q 022590          275 STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       275 ~~l~s~~~dg~i~vw~~~~  293 (294)
                      ..+.+-+.|..|+++++++
T Consensus       214 ~qistl~~DrkVR~F~~Kt  232 (558)
T KOG0882|consen  214 AQISTLNPDRKVRGFVFKT  232 (558)
T ss_pred             CcccccCcccEEEEEEecc
Confidence            9999999999999999875

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.16  E-value=2.8e-09  Score=87.74  Aligned_cols=180  Identities=16%  Similarity=0.222  Sum_probs=131.6

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  104 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  104 (294)
                      .++.|+.-..+..+|+.+.+..+...-....|+-|+.   +++++.+|...|+|.+-|..+.+.+..+.   .|++.|.+
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~---aHs~siSD  222 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFD---AHSGSISD  222 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeee---ccccceee
Confidence            5777777778888899888877766655556777766   45899999999999999999999999999   79999999


Q ss_pred             EEEecCCCceEEeeec---------CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-
Q 022590          105 VDFHPSDIYRIASCGM---------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  174 (294)
Q Consensus       105 l~~~~~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  174 (294)
                      +..   .+++|+++|.         |.-|+|||+|..+...-                       +..+.++ .-+.|. 
T Consensus       223 fDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-----------------------I~~~~~P-~flrf~P  275 (1118)
T KOG1275|consen  223 FDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-----------------------IQFPYGP-QFLRFHP  275 (1118)
T ss_pred             eec---cCCeEEEeecccccccccccchhhhhhhhhhhccCC-----------------------cccccCc-hhhhhcc
Confidence            887   4567777764         66789999998432211                       1111111 222332 


Q ss_pred             --cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          175 --GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       175 --~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                        ...+++++..|...+-|..+...     +.............+..+.+++++  ..++.|..+|.|.+|.
T Consensus       276 sl~t~~~V~S~sGq~q~vd~~~lsN-----P~~~~~~v~p~~s~i~~fDiSsn~--~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  276 SLTTRLAVTSQSGQFQFVDTATLSN-----PPAGVKMVNPNGSGISAFDISSNG--DALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cccceEEEEecccceeeccccccCC-----CccceeEEccCCCcceeEEecCCC--ceEEEecccCcEeeec
Confidence              56788889999999999554432     111233333344558899999998  6999999999999998

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.16  E-value=1.8e-10  Score=89.77  Aligned_cols=175  Identities=19%  Similarity=0.208  Sum_probs=121.4

Q ss_pred             cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee
Q 022590           95 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL  174 (294)
Q Consensus        95 ~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (294)
                      +.+|...|..++--. +.+-+++++.|.++++|.++.......                ......+...|..+|..+.|-
T Consensus       731 f~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~----------------tsaCQfTY~aHkk~i~~igfL  793 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIG----------------TSACQFTYQAHKKPIHDIGFL  793 (1034)
T ss_pred             ccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccc----------------cceeeeEhhhccCcccceeee
Confidence            338999999988765 677799999999999999987322111                123456778899999999997


Q ss_pred             cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE-cCCCeEEEEeccCCCceee
Q 022590          175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSPPVLI  253 (294)
Q Consensus       175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~  253 (294)
                      .+.-..++.||.|.+||.--+.....      . ......+....+..-++-...++.+| +...+|+++|.+..+....
T Consensus       794 ~~lr~i~ScD~giHlWDPFigr~Laq------~-~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E  866 (1034)
T KOG4190|consen  794 ADLRSIASCDGGIHLWDPFIGRLLAQ------M-EDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE  866 (1034)
T ss_pred             eccceeeeccCcceeecccccchhHh------h-hcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence            55444556789999999876543110      0 11111223333444444222344444 7899999999999876555


Q ss_pred             eecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          254 ARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       254 ~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+.- ..+....+++++..|.|+.++.+-.+|+|-+.|.++
T Consensus       867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~  907 (1034)
T KOG4190|consen  867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN  907 (1034)
T ss_pred             EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence            5443 224446789999999999999999999999998765

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=6.7e-09  Score=77.79  Aligned_cols=95  Identities=15%  Similarity=0.241  Sum_probs=81.3

Q ss_pred             EEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCce
Q 022590           35 IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR  114 (294)
Q Consensus        35 i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~  114 (294)
                      +++.+..+.+....+.+|...|.+++|+|.+..++..++.+.+|+|.|+++...+..+.   .+ ..+++++|.-++.++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~-~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AY-NQIWSCCWDLDERHV  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---cc-CCceeeeeccCCcce
Confidence            55555556666667778889999999999666689999999999999999999888887   35 789999999978899


Q ss_pred             EEeeecCCcEEEEeccccc
Q 022590          115 IASCGMDNTVKIWSMKEFW  133 (294)
Q Consensus       115 l~~~~~dg~i~~wd~~~~~  133 (294)
                      +..|-..|.|.+||++...
T Consensus       251 IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             eEEeccCceEEEEEccCCC
Confidence            9999999999999999844

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.14  E-value=1.3e-10  Score=59.25  Aligned_cols=39  Identities=36%  Similarity=0.681  Sum_probs=36.2

Q ss_pred             ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590           43 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus        43 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      ++++.++++|.++|++|+|+| ++.+|++|+.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            356788999999999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=4.5e-08  Score=76.56  Aligned_cols=260  Identities=10%  Similarity=0.081  Sum_probs=144.9

Q ss_pred             eEEEEEeecCCCceEEEEeecC-----------CeEEEEEcCCccccceeccc--CcceE-EEEeCCCCCceEEEeeCCC
Q 022590           11 FYTVSWACNVDGIPFLVAGGIN-----------GIIRVIDVSNEKLHKSFVGH--GDSIN-EIRTQPLKPSLVVSASKDE   76 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~h--~~~v~-~~~~~~~~~~~l~s~~~dg   76 (294)
                      |.-+.||  |..+ ||++-+..           ..++|||+.+|...+.+...  ...+. -..||. +++++|--.. .
T Consensus       252 Vq~idfS--P~Ek-YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~  326 (698)
T KOG2314|consen  252 VQFIDFS--PNEK-YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-N  326 (698)
T ss_pred             ceeeecC--Cccc-eEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-c
Confidence            4456665  8888 99987632           57999999999998888753  22333 367998 8888887666 5


Q ss_pred             cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC-----CcEEEEecccccccccc--------ceeec
Q 022590           77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEK--------SFTWT  143 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~--------~~~~~  143 (294)
                      .|.||+..+-.++..-.   -.-..|....|+| .+++||-=...     ..+.+-.+.+.......        .+.|+
T Consensus       327 sisIyEtpsf~lld~Ks---lki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ  402 (698)
T KOG2314|consen  327 SISIYETPSFMLLDKKS---LKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ  402 (698)
T ss_pred             eEEEEecCceeeecccc---cCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEec
Confidence            68899876643332211   1345688888998 66655532210     11222222221111000        01111


Q ss_pred             C-----------CCCCC-CCceeeeceEEeec---------CCCceeeccee--cceEEEeeC---CCeEEEecCCCCCC
Q 022590          144 D-----------LPSKF-PTKYVQFPVFIASV---------HSNYVDCNRWL--GDFILSKSV---DNEIVLWEPKMKEQ  197 (294)
Q Consensus       144 ~-----------~~~~~-~~~~~~~~~~~~~~---------~~~~i~~~~~~--~~~l~~~~~---d~~i~iwd~~~~~~  197 (294)
                      .           ..... ........+..+..         -...|...+|.  |+.+++-+.   ..++.+|.+.+...
T Consensus       403 k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~  482 (698)
T KOG2314|consen  403 KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK  482 (698)
T ss_pred             cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC
Confidence            1           00000 00001111111111         22345555664  776665543   35688898874221


Q ss_pred             CCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE---cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590          198 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG---NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (294)
                           ...++..+..  ...+.+.|+|.|.  +++.+   +..|.+.++|+...........   .| ...+.+.|.|.|
T Consensus       483 -----~~~lVk~~dk--~~~N~vfwsPkG~--fvvva~l~s~~g~l~F~D~~~a~~k~~~~~---eh-~~at~veWDPtG  549 (698)
T KOG2314|consen  483 -----KPSLVKELDK--KFANTVFWSPKGR--FVVVAALVSRRGDLEFYDTDYADLKDTASP---EH-FAATEVEWDPTG  549 (698)
T ss_pred             -----chhhhhhhcc--cccceEEEcCCCc--EEEEEEecccccceEEEecchhhhhhccCc---cc-cccccceECCCC
Confidence                 2223443332  4466899999994  55543   4678999999986432222222   22 346789999999


Q ss_pred             CEEEEeccCC------cEEEEecC
Q 022590          275 STILSCCEDG------AIWRWDAI  292 (294)
Q Consensus       275 ~~l~s~~~dg------~i~vw~~~  292 (294)
                      +|+++++.-+      --++|++.
T Consensus       550 RYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  550 RYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             CEEEEeeehhhhccccceEEEEee
Confidence            9999987533      34566543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.06  E-value=2.2e-07  Score=71.53  Aligned_cols=213  Identities=13%  Similarity=0.045  Sum_probs=143.3

Q ss_pred             cCCCceEEEEeecCCeEEEEEcCCccccceecc-----------cCcceEEEE-eCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590           19 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-----------HGDSINEIR-TQPLKPSLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------h~~~v~~~~-~~~~~~~~l~s~~~dg~i~vwd~~~~   86 (294)
                      +.||+..++.  .-|.|.+||.++.+..+.--+           ...+..-+. |++.++++++..+. |...+.+...+
T Consensus       275 nsDGkrIvFq--~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~  351 (668)
T COG4946         275 NSDGKRIVFQ--NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG  351 (668)
T ss_pred             CCCCcEEEEe--cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence            3578733333  457899999887654321111           111222233 56667889988887 77888877666


Q ss_pred             ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC-cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      -.++.     +|.+.|.-..+.. +++-++.|..|| .+-++|.+...                        +......-
T Consensus       352 ~~iqv-----~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e------------------------~kr~e~~l  401 (668)
T COG4946         352 YSIQV-----GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE------------------------VKRIEKDL  401 (668)
T ss_pred             eeEEc-----CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce------------------------EEEeeCCc
Confidence            55443     5788898888887 666899999999 89999999742                        23344455


Q ss_pred             Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC----e
Q 022590          166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG----K  239 (294)
Q Consensus       166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg----~  239 (294)
                      +.|.++..+  |..++++.....|-+.|+.+++.         ..--+....-|+...|+|++  +++|-+-.+|    .
T Consensus       402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv---------~~idkS~~~lItdf~~~~ns--r~iAYafP~gy~tq~  470 (668)
T COG4946         402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV---------RLIDKSEYGLITDFDWHPNS--RWIAYAFPEGYYTQS  470 (668)
T ss_pred             cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe---------eEecccccceeEEEEEcCCc--eeEEEecCcceeeee
Confidence            666666665  78899988889999999998862         11222334668899999998  6888877665    5


Q ss_pred             EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe
Q 022590          240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC  280 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  280 (294)
                      |+++|+..++........  ++   =.+-+|.||+++|.--
T Consensus       471 Iklydm~~~Kiy~vTT~t--a~---DfsPaFD~d~ryLYfL  506 (668)
T COG4946         471 IKLYDMDGGKIYDVTTPT--AY---DFSPAFDPDGRYLYFL  506 (668)
T ss_pred             EEEEecCCCeEEEecCCc--cc---ccCcccCCCCcEEEEE
Confidence            899999988632222211  21   2345789999987644

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.05  E-value=1.7e-09  Score=80.76  Aligned_cols=98  Identities=17%  Similarity=0.351  Sum_probs=78.8

Q ss_pred             CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCC
Q 022590           32 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  111 (294)
Q Consensus        32 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  111 (294)
                      ...+.+|+...+. ...+-+|-..+++++|+| |+++++++..|..|++-....-..+..|..  ||+.-|..++.-+  
T Consensus       131 ~~~~di~s~~~~~-~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Iesfcl--GH~eFVS~isl~~--  204 (390)
T KOG3914|consen  131 VYSFDILSADSGR-CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCL--GHKEFVSTISLTD--  204 (390)
T ss_pred             ceeeeeecccccC-cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhcc--ccHhheeeeeecc--
Confidence            3455555555433 344567999999999999 889999999999999988877666666654  8999999999985  


Q ss_pred             CceEEeeecCCcEEEEeccccccc
Q 022590          112 IYRIASCGMDNTVKIWSMKEFWTY  135 (294)
Q Consensus       112 ~~~l~~~~~dg~i~~wd~~~~~~~  135 (294)
                      +..|++++.|+++++||+++++..
T Consensus       205 ~~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  205 NYLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             CceeeecCCCCcEEEEecccCCcc
Confidence            455999999999999999996654

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=2.2e-07  Score=72.77  Aligned_cols=198  Identities=16%  Similarity=0.233  Sum_probs=126.2

Q ss_pred             ccCceeEEEEEeecCCCceEEEE-----eecCCeEEEEEcCCcccccee---cccCcceEEEEeCCCCCceEEEee--CC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVA-----GGINGIIRVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSAS--KD   75 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~-----~~~dg~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~--~d   75 (294)
                      -|...|+.+.+++.|.-. .+|+     ++.-+.|+||..........+   .-....=..+.|++.+..+|+.++  -|
T Consensus       163 l~~~~i~~f~lSpgp~~~-~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  163 LSVSGITMLSLSPGPEPP-FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eeccceeeEEecCCCCCc-eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeec
Confidence            356678888888554443 5554     345578999988643322211   112223345778874444544443  23


Q ss_pred             ---------CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEe--eecCCcEEEEeccccccccccceeecC
Q 022590           76 ---------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS--CGMDNTVKIWSMKEFWTYVEKSFTWTD  144 (294)
Q Consensus        76 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~  144 (294)
                               .++.+.+++.......+.    -.++|.++.|+| ++..+++  |-.-..+.++|++.             
T Consensus       242 ktn~SYYGEq~Lyll~t~g~s~~V~L~----k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~-------------  303 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQGESVSVPLL----KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRG-------------  303 (566)
T ss_pred             CCCccccccceEEEEEecCceEEEecC----CCCCceEEEECC-CCCEEEEEEecccceEEEEcCCC-------------
Confidence                     357777876444444443    689999999999 6654544  45667899999986             


Q ss_pred             CCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCC---CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590          145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF  219 (294)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~  219 (294)
                                 .+  .+...+++=+++-|+  |++++.++.+   |.+-+||+.+.+         .+..+...  .-+-
T Consensus       304 -----------~~--v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K---------~i~~~~a~--~tt~  359 (566)
T KOG2315|consen  304 -----------KP--VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK---------LIAKFKAA--NTTV  359 (566)
T ss_pred             -----------CE--eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh---------hccccccC--CceE
Confidence                       12  233344555677776  8888887764   789999998755         34444433  3446


Q ss_pred             EEEcccCCcceEEEEcC------CCeEEEEeccCC
Q 022590          220 IKFSCDFHYNAAAIGNR------EGKIFVWELQSS  248 (294)
Q Consensus       220 ~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~  248 (294)
                      +.|+|+|.  ++++++.      |+.++||+....
T Consensus       360 ~eW~PdGe--~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  360 FEWSPDGE--YFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             EEEcCCCc--EEEEEeccccEEecCCeEEEEecCc
Confidence            78999995  6666553      788999998654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.04  E-value=9.2e-08  Score=74.00  Aligned_cols=239  Identities=12%  Similarity=0.105  Sum_probs=145.9

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCC----------
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE----------   76 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg----------   76 (294)
                      ..-++..++||  |.|. +|++.... .|.+|.......+..+. | ..|..+.|+| ++++|.+=+..+          
T Consensus        31 ~~~p~~~~~~S--P~G~-~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp  103 (561)
T COG5354          31 ENWPVAYVSES--PLGT-YLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISP  103 (561)
T ss_pred             cCcchhheeec--Ccch-heehhhcc-ceEEccccchhheeeee-c-CCceecccCc-ccceeeeeccCCccChhhccCC
Confidence            44577778887  9998 88887766 59999987766555554 3 5689999999 889999865444          


Q ss_pred             -----cEEEEEcCCCceEEEeeccCCCCCc--ee-EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590           77 -----SVRLWNVQTGICILIFAGAGGHRNE--VL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        77 -----~i~vwd~~~~~~~~~~~~~~~~~~~--v~-~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                           .+.+||+.+|..+..+..   ...+  .+ -+.|+- +..++|-. ....++++++.....              
T Consensus       104 ~~~~n~~~vwd~~sg~iv~sf~~---~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~t~n~~--------------  164 (561)
T COG5354         104 FTSKNNVFVWDIASGMIVFSFNG---ISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEITDNIE--------------  164 (561)
T ss_pred             ccccCceeEEeccCceeEeeccc---cCCcccccceeeeee-cchhhhhh-ccCeEEEEecCCccc--------------
Confidence                 499999999999988874   3333  44 678887 55555444 345799999733110              


Q ss_pred             CCCceeeeceEEeecCCCceeeccee----cceEE-----EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590          149 FPTKYVQFPVFIASVHSNYVDCNRWL----GDFIL-----SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF  219 (294)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~-----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~  219 (294)
                            ..+...+.  ...|....++    +..|+     ..+..+.+++|.+....         .+.........-..
T Consensus       165 ------~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s---------~l~tk~lfk~~~~q  227 (561)
T COG5354         165 ------EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS---------VLVTKNLFKVSGVQ  227 (561)
T ss_pred             ------cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC---------eeeeeeeEeecccE
Confidence                  00110111  1223333333    11222     13456678888776433         22222222223335


Q ss_pred             EEEcccCCcceEEEEc---------CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe--ccCCcEEE
Q 022590          220 IKFSCDFHYNAAAIGN---------REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC--CEDGAIWR  288 (294)
Q Consensus       220 ~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~v  288 (294)
                      +.|.+.+++..+.+-.         .+..+++++++........     ...++|...+|.|.++.+++.  -.+-.+.+
T Consensus       228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-----~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~  302 (561)
T COG5354         228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-----DLKDPVHDFTWEPLSSRFAVISGYMPASVSV  302 (561)
T ss_pred             EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-----cccccceeeeecccCCceeEEecccccceee
Confidence            7788888533222221         2356788888744321111     334789999999998877654  46777888


Q ss_pred             EecCC
Q 022590          289 WDAIP  293 (294)
Q Consensus       289 w~~~~  293 (294)
                      +|++.
T Consensus       303 ~~lr~  307 (561)
T COG5354         303 FDLRG  307 (561)
T ss_pred             ccccc
Confidence            87753

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.03  E-value=1.4e-09  Score=55.39  Aligned_cols=38  Identities=32%  Similarity=0.675  Sum_probs=34.6

Q ss_pred             ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEe
Q 022590           87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS  128 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd  128 (294)
                      +++..+.   +|.+.|++|+|+| ++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~---~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFR---GHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEE---SSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEc---CCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            5667777   7999999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.96  E-value=5.6e-07  Score=69.82  Aligned_cols=235  Identities=15%  Similarity=0.112  Sum_probs=143.8

Q ss_pred             eeEEEEEeecCCCceEEEEeecCC---------------eEEEEEcCCccccceecccCcc--eE-EEEeCCCCCceEEE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGING---------------IIRVIDVSNEKLHKSFVGHGDS--IN-EIRTQPLKPSLVVS   71 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg---------------~i~iw~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~l~s   71 (294)
                      .|+-+.|+  |.++ ||.+-+..+               .+.+||..++..+..+.....+  .. -+.|+- +..++|=
T Consensus        73 ~V~~~~fS--P~~k-YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~AR  148 (561)
T COG5354          73 DVKYLDFS--PNEK-YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVAR  148 (561)
T ss_pred             CceecccC--cccc-eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhh
Confidence            46666676  8898 888876543               4999999999999988876665  44 678888 5555554


Q ss_pred             eeCCCcEEEEEcCCCce-EEEeeccCCCCCceeEEEEecC-CCceEEe-----eecCCcEEEEeccccccccccceeecC
Q 022590           72 ASKDESVRLWNVQTGIC-ILIFAGAGGHRNEVLSVDFHPS-DIYRIAS-----CGMDNTVKIWSMKEFWTYVEKSFTWTD  144 (294)
Q Consensus        72 ~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~-----~~~dg~i~~wd~~~~~~~~~~~~~~~~  144 (294)
                      - ....+.|+++ ++.. ...+..+  ....|....|+|. +...|+.     .+.++.+++|.+..........     
T Consensus       149 v-v~~sl~i~e~-t~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-----  219 (561)
T COG5354         149 V-VGSSLYIHEI-TDNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-----  219 (561)
T ss_pred             h-ccCeEEEEec-CCccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-----
Confidence            3 3356889997 3332 2222211  1256888899984 2233333     3567788888887532211111     


Q ss_pred             CCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee-----------CCCeEEEecCCCCCCCCCCCCceeeeeee
Q 022590          145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-----------VDNEIVLWEPKMKEQSPGEGTADILQKYP  211 (294)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  211 (294)
                                        -....-..+.|+  |+++++-.           .+..+.+++++...          +....
T Consensus       220 ------------------lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~----------i~V~~  271 (561)
T COG5354         220 ------------------LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS----------IPVEK  271 (561)
T ss_pred             ------------------eEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc----------cceec
Confidence                              001111122232  44333211           13567888887432          11111


Q ss_pred             cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC---CcEEE
Q 022590          212 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED---GAIWR  288 (294)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d---g~i~v  288 (294)
                      ...++|...+|.|.++.-.+++|..+..+.++|++.+   ....+.    ...=+.+-|+|.+++++.++-|   |.+-+
T Consensus       272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~P----e~~rNT~~fsp~~r~il~agF~nl~gni~i  344 (561)
T COG5354         272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFP----EQKRNTIFFSPHERYILFAGFDNLQGNIEI  344 (561)
T ss_pred             cccccceeeeecccCCceeEEecccccceeecccccc---eEEecC----CcccccccccCcccEEEEecCCccccceEE
Confidence            3467889999999997555666788999999999886   333332    1334567788988888887655   56778


Q ss_pred             EecC
Q 022590          289 WDAI  292 (294)
Q Consensus       289 w~~~  292 (294)
                      ||..
T Consensus       345 ~~~~  348 (561)
T COG5354         345 FDPA  348 (561)
T ss_pred             eccC
Confidence            7754

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.1e-07  Score=71.59  Aligned_cols=80  Identities=9%  Similarity=0.156  Sum_probs=69.6

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      -.|...|..++|+++..|  ++..++.+..|+|.|+++...+..+..+ ..+++++|.-++.+++++|-..|.|.|||++
T Consensus       190 p~~g~~IrdlafSp~~~G--Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R  266 (463)
T KOG1645|consen  190 PGEGSFIRDLAFSPFNEG--LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR  266 (463)
T ss_pred             cccchhhhhhccCccccc--eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence            356678889999855555  7999999999999999999999999888 8999999999788899999999999999998


Q ss_pred             CCc
Q 022590           85 TGI   87 (294)
Q Consensus        85 ~~~   87 (294)
                      ..+
T Consensus       267 ~~~  269 (463)
T KOG1645|consen  267 QPE  269 (463)
T ss_pred             CCC
Confidence            654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.92  E-value=2.6e-06  Score=60.89  Aligned_cols=69  Identities=19%  Similarity=0.199  Sum_probs=55.6

Q ss_pred             CceEEEEeecCCeEEEEEcCCccccceecccCcceEE-EEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEee
Q 022590           22 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINE-IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA   93 (294)
Q Consensus        22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~   93 (294)
                      |+ +++.|+..|.+++.+..+|.+...+..- +.|.+ -...+ ++.++..|+.|++....|.++..++.+.+
T Consensus        63 gd-fVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   63 GD-FVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CC-EEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcC-CCceEEEecCCCcEEEecccccceEEecc
Confidence            55 7999999999999999999888777643 33332 23344 77899999999999999999999888866

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.92  E-value=9.5e-07  Score=75.60  Aligned_cols=264  Identities=12%  Similarity=0.126  Sum_probs=147.4

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCe--EEEEEcCC-ccc---ccee--cccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGI--IRVIDVSN-EKL---HKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~--i~iw~~~~-~~~---~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      .++....+|..+|.-. .++++...+.  +..+.... ++.   ...+  ......|.++.|.. +.+.++.+..+|.|.
T Consensus        16 ~~~~~~~~f~l~~~~~-~~ass~~~~~~~~~~~ei~~~~kv~~~~~s~~~~~gd~~i~s~~fl~-d~~~i~v~~~~G~ii   93 (1265)
T KOG1920|consen   16 AGPGNAQAFILSPELV-TVASSTINELLGLKIFEIESVGKVRLVAESFLPEDGDDEIVSVQFLA-DTNSICVITALGDII   93 (1265)
T ss_pred             CCCCchhheeeccccc-eeeeceeeecccccceeeeccccccceeecccCcCCCcceEEEEEec-ccceEEEEecCCcEE
Confidence            3445677788777654 5555533322  22232221 220   1111  12336899999998 777888888999999


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccce-------------eecCCC
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF-------------TWTDLP  146 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------------~~~~~~  146 (294)
                      +-|.++......-    .-...|.+++|+| ++..++..+..+++.+-. .......+..+             .|....
T Consensus        94 lvd~et~~~eivg----~vd~GI~aaswS~-Dee~l~liT~~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrke  167 (1265)
T KOG1920|consen   94 LVDPETLELEIVG----NVDNGISAASWSP-DEELLALITGRQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKE  167 (1265)
T ss_pred             EEcccccceeeee----eccCceEEEeecC-CCcEEEEEeCCcEEEEEe-ccccchhccccccccccccccceecccccc
Confidence            9988776543322    2667899999999 888888888776665533 22222222222             111000


Q ss_pred             CCCCCceeeeceEEeec---------CCCceeecce--ecceEEEe-----eCCCeEEEecCCCCCCCCCCCCceeeeee
Q 022590          147 SKFPTKYVQFPVFIASV---------HSNYVDCNRW--LGDFILSK-----SVDNEIVLWEPKMKEQSPGEGTADILQKY  210 (294)
Q Consensus       147 ~~~~~~~~~~~~~~~~~---------~~~~i~~~~~--~~~~l~~~-----~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  210 (294)
                      ..+.....+........         -.+.=+.+.|  +|+++++.     ...+.|++||-. +......         
T Consensus       168 Tqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s---------  237 (1265)
T KOG1920|consen  168 TQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS---------  237 (1265)
T ss_pred             eeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc---------
Confidence            00000000000000000         1112234666  47788873     233789999987 3211100         


Q ss_pred             ecCCCCeeEEEEcccCCcceEEEE---cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE---eccCC
Q 022590          211 PVPECDIWFIKFSCDFHYNAAAIG---NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS---CCEDG  284 (294)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s---~~~dg  284 (294)
                      ......-.+++|-|.|  ..+++-   ..|+.|.+|.-+..+. -...++......++..++|+.++..||+   .....
T Consensus       238 e~~~~l~~~LsWkPsg--s~iA~iq~~~sd~~IvffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~  314 (1265)
T KOG1920|consen  238 EPVEGLQHSLSWKPSG--SLIAAIQCKTSDSDIVFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENS  314 (1265)
T ss_pred             CcccccccceeecCCC--CeEeeeeecCCCCcEEEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccc
Confidence            0011223368899987  466653   3566799998765431 2223333344456999999999999998   55555


Q ss_pred             cEEEEecC
Q 022590          285 AIWRWDAI  292 (294)
Q Consensus       285 ~i~vw~~~  292 (294)
                      .|++|-+.
T Consensus       315 ~v~lwt~~  322 (1265)
T KOG1920|consen  315 LVQLWTTG  322 (1265)
T ss_pred             eEEEEEec
Confidence            69999764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=6.8e-06  Score=65.71  Aligned_cols=208  Identities=12%  Similarity=-0.029  Sum_probs=113.3

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCc-eEEEeeC---CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEe
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASK---DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  108 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~  108 (294)
                      ..|.+-|.+... .+.+... +....-.|+| +++ .++..+.   +..|.++|+.+++......    ..+......|+
T Consensus       169 ~~l~~~d~dg~~-~~~~~~~-~~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~----~~g~~~~~~~S  241 (419)
T PRK04043        169 SNIVLADYTLTY-QKVIVKG-GLNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS----SQGMLVVSDVS  241 (419)
T ss_pred             ceEEEECCCCCc-eeEEccC-CCeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec----CCCcEEeeEEC
Confidence            356665654333 3333333 3778899999 666 3554433   3568888998887655443    44556678899


Q ss_pred             cCCC-ceEEeeecC--CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC
Q 022590          109 PSDI-YRIASCGMD--NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV  183 (294)
Q Consensus       109 ~~~~-~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~  183 (294)
                      | ++ .++++.+.+  ..|.++|+....                        ...+..+........|+  |+.|+-.+.
T Consensus       242 P-DG~~la~~~~~~g~~~Iy~~dl~~g~------------------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sd  296 (419)
T PRK04043        242 K-DGSKLLLTMAPKGQPDIYLYDTNTKT------------------------LTQITNYPGIDVNGNFVEDDKRIVFVSD  296 (419)
T ss_pred             C-CCCEEEEEEccCCCcEEEEEECCCCc------------------------EEEcccCCCccCccEECCCCCEEEEEEC
Confidence            9 55 444555544  456666766521                        11111122111223454  665555443


Q ss_pred             -CC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC--------CeEEEEeccCCCcee
Q 022590          184 -DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE--------GKIFVWELQSSPPVL  252 (294)
Q Consensus       184 -d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~  252 (294)
                       .+  .|.+.|+.+++.          ..+.....  ....|+|+++. ++++....        ..|.+.|+.+++.. 
T Consensus       297 r~g~~~Iy~~dl~~g~~----------~rlt~~g~--~~~~~SPDG~~-Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-  362 (419)
T PRK04043        297 RLGYPNIFMKKLNSGSV----------EQVVFHGK--NNSSVSTYKNY-IVYSSRETNNEFGKNTFNLYLISTNSDYIR-  362 (419)
T ss_pred             CCCCceEEEEECCCCCe----------EeCccCCC--cCceECCCCCE-EEEEEcCCCcccCCCCcEEEEEECCCCCeE-
Confidence             33  577788876542          11111111  12489999962 33333332        36888898887532 


Q ss_pred             eeeccccccCCCeEEEEEccCCCEEEEeccC-Cc--EEEEec
Q 022590          253 IARLSHAQSKSPIRQTAMSYDGSTILSCCED-GA--IWRWDA  291 (294)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-g~--i~vw~~  291 (294)
                        .+...   .......|+|||+.|+..+.+ +.  +.+.++
T Consensus       363 --~LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        363 --RLTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             --ECCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence              23211   123358899999987765533 33  444444

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.90  E-value=9.1e-06  Score=60.50  Aligned_cols=225  Identities=15%  Similarity=0.113  Sum_probs=132.9

Q ss_pred             EEEEeecC-CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE
Q 022590           13 TVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI   91 (294)
Q Consensus        13 ~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~   91 (294)
                      +..|.  + ++. ++++-...+.|..|+..+++... +....  ...+++...++. |+.+...+ +.++|..+++....
T Consensus         4 gp~~d--~~~g~-l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    4 GPVWD--PRDGR-LYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEE--TTTTE-EEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEE
T ss_pred             ceEEE--CCCCE-EEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEE
Confidence            45676  6 565 77777788999999988775432 32222  677777732554 45555544 55669988866554


Q ss_pred             eecc-CC-CCCceeEEEEecCCCceEEeeecC--------CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           92 FAGA-GG-HRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        92 ~~~~-~~-~~~~v~~l~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      .... .. .....+.+++.| ++++.++....        |.+..++...                       .  ....
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-----------------------~--~~~~  129 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDG-----------------------K--VTVV  129 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTS-----------------------E--EEEE
T ss_pred             eeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCC-----------------------e--EEEE
Confidence            4431 12 345789999999 78866665533        4455555552                       1  1112


Q ss_pred             ecCCCceeeccee--cceE-EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          162 SVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ...-...+.++|+  ++.| ++-+..+.|..|++.......  .....+............+++..++  ++.++....+
T Consensus       130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~g~pDG~~vD~~G--~l~va~~~~~  205 (246)
T PF08450_consen  130 ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL--SNRRVFIDFPGGPGYPDGLAVDSDG--NLWVADWGGG  205 (246)
T ss_dssp             EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE--EEEEEEEE-SSSSCEEEEEEEBTTS---EEEEEETTT
T ss_pred             ecCcccccceEECCcchheeecccccceeEEEeccccccce--eeeeeEEEcCCCCcCCCcceEcCCC--CEEEEEcCCC
Confidence            2223445677786  5555 466778889999986433100  0011222222222347789999988  5677777789


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEc-cCCCEEEEe
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGSTILSC  280 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~  280 (294)
                      .|.+++.+ ++......+.    ...+++++|. ++.+.|+..
T Consensus       206 ~I~~~~p~-G~~~~~i~~p----~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  206 RIVVFDPD-GKLLREIELP----VPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEEEETT-SCEEEEEE-S----SSSEEEEEEESTTSSEEEEE
T ss_pred             EEEEECCC-ccEEEEEcCC----CCCEEEEEEECCCCCEEEEE
Confidence            99999988 5533333332    2368999994 665655543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.88  E-value=2.3e-06  Score=63.40  Aligned_cols=199  Identities=15%  Similarity=0.076  Sum_probs=112.3

Q ss_pred             CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEe-eccCCCC
Q 022590           21 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIF-AGAGGHR   99 (294)
Q Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~   99 (294)
                      ++. .+++++.++.|..||..+|+.+.++.. ..++......  .+..++.++.++.+..+|..+|+.+... .....-.
T Consensus        35 ~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   35 DGG-RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             ETT-EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             eCC-EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cccccccccceeeeEecccCCcceeeeecccccccc
Confidence            455 677778999999999999998877764 2222111121  3345666778889999999999998884 3210011


Q ss_pred             CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEE
Q 022590          100 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFIL  179 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~  179 (294)
                      .......... .+..++.+..++.|..+|++++.............         .....   ........+.+.+..++
T Consensus       111 ~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~v~  177 (238)
T PF13360_consen  111 GVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG---------SSPIS---SFSDINGSPVISDGRVY  177 (238)
T ss_dssp             STB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S---------S--EE---EETTEEEEEECCTTEEE
T ss_pred             ccccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC---------Cccee---eecccccceEEECCEEE
Confidence            1122233333 35667888889999999999854322221100000         00000   00000112222334666


Q ss_pred             EeeCCCe-EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce
Q 022590          180 SKSVDNE-IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  251 (294)
Q Consensus       180 ~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  251 (294)
                      .+..++. +.+ |+.+++.         +-...  ......+ ....+  ..++.++.++.+..||+++++..
T Consensus       178 ~~~~~g~~~~~-d~~tg~~---------~w~~~--~~~~~~~-~~~~~--~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  178 VSSGDGRVVAV-DLATGEK---------LWSKP--ISGIYSL-PSVDG--GTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             EECCTSSEEEE-ETTTTEE---------EEEEC--SS-ECEC-EECCC--TEEEEEETTTEEEEEETTTTEEE
T ss_pred             EEcCCCeEEEE-ECCCCCE---------EEEec--CCCccCC-ceeeC--CEEEEEeCCCEEEEEECCCCCEE
Confidence            6677775 555 9887752         22222  2222221 23344  46777779999999999998643

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=3.7e-06  Score=67.21  Aligned_cols=113  Identities=11%  Similarity=0.037  Sum_probs=67.9

Q ss_pred             eeEEEEEeecCCCceEEEEeec---CCeEEEEEcCCccccceecccCcceEEEEeCCCCCc-eEEEeeCC--CcEEEEEc
Q 022590           10 SFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKD--ESVRLWNV   83 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~d--g~i~vwd~   83 (294)
                      .+..-.|+  |||+..++..+.   +..|.++|+.+++...... ..+......|+| +++ ++++.+.+  ..|.++|+
T Consensus       189 ~~~~p~wS--pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWA--NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEEC--CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEEC
Confidence            44566776  899732444333   3579999998876544333 455667788999 665 44455444  45777788


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceE-EeeecCC--cEEEEeccc
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDN--TVKIWSMKE  131 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~dg--~i~~wd~~~  131 (294)
                      .+++... +..   +........|+| +++.| ++....+  .|.+.|+..
T Consensus       265 ~~g~~~~-LT~---~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        265 NTKTLTQ-ITN---YPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             CCCcEEE-ccc---CCCccCccEECC-CCCEEEEEECCCCCceEEEEECCC
Confidence            7776433 331   333334567999 66544 4444444  466666655

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.88  E-value=7.1e-06  Score=64.61  Aligned_cols=243  Identities=11%  Similarity=0.022  Sum_probs=129.2

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc-------------------------------------------c
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-------------------------------------------H   46 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------------------------~   46 (294)
                      .|..+.|+  ++.. -|++|...|.|.||.....+.                                           .
T Consensus         3 ~v~~vs~a--~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~   79 (395)
T PF08596_consen    3 SVTHVSFA--PETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPL   79 (395)
T ss_dssp             -EEEEEEE--TTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEE
T ss_pred             eEEEEEec--CCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCch
Confidence            57788887  6554 699999999999997532210                                           0


Q ss_pred             ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC-----CCCCceeEEEEec----CCC---ce
Q 022590           47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG-----GHRNEVLSVDFHP----SDI---YR  114 (294)
Q Consensus        47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~~v~~l~~~~----~~~---~~  114 (294)
                      ..++...++|++++.+.  -.+++.|..+|.+.|.|++....+..-....     .....|+++.|..    +++   -.
T Consensus        80 ~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~  157 (395)
T PF08596_consen   80 TLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC  157 (395)
T ss_dssp             EEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred             hheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence            11223467899999974  5699999999999999998777766532211     2345688898863    122   56


Q ss_pred             EEeeecCCcEEEEeccc-cccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce-e------------------
Q 022590          115 IASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-L------------------  174 (294)
Q Consensus       115 l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~------------------  174 (294)
                      +++|...|.+.+|.+.- ......-.+.                 .....+.++|..+.. +                  
T Consensus       158 L~vGTn~G~v~~fkIlp~~~g~f~v~~~-----------------~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~  220 (395)
T PF08596_consen  158 LLVGTNSGNVLTFKILPSSNGRFSVQFA-----------------GATTNHDSPILSIIPINADTGESALATISAMQGLS  220 (395)
T ss_dssp             EEEEETTSEEEEEEEEE-GGG-EEEEEE-----------------EEE--SS----EEEEEETTT--B-B-BHHHHHGGG
T ss_pred             EEEEeCCCCEEEEEEecCCCCceEEEEe-----------------eccccCCCceEEEEEEECCCCCcccCchhHhhccc
Confidence            88899999999998863 1111111110                 000112222221110 0                  


Q ss_pred             ----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc---cCCcceEEEEcCCCeEEEEeccC
Q 022590          175 ----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC---DFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       175 ----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                          -+-++....+..++++...+.+.         ..+..........+.+.+   ......|++-..+|.+++|.+..
T Consensus       221 ~g~~i~g~vVvvSe~~irv~~~~~~k~---------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~  291 (395)
T PF08596_consen  221 KGISIPGYVVVVSESDIRVFKPPKSKG---------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS  291 (395)
T ss_dssp             GT----EEEEEE-SSEEEEE-TT---E---------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred             cCCCcCcEEEEEcccceEEEeCCCCcc---------cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence                11244445578899999876542         222221112222334432   11225788889999999999998


Q ss_pred             CCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590          248 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED  283 (294)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  283 (294)
                      -+.+....+....+...+....++++|..++-.+..
T Consensus       292 Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps  327 (395)
T PF08596_consen  292 LKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS  327 (395)
T ss_dssp             --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred             chHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence            876655555432233345667789999887766543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.86  E-value=2.1e-06  Score=62.76  Aligned_cols=220  Identities=9%  Similarity=0.052  Sum_probs=117.5

Q ss_pred             eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEE
Q 022590           48 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW  127 (294)
Q Consensus        48 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~w  127 (294)
                      .+.+-...++.|+|.|+++.++++....+.|..++. +|+.+..+...  -.+..-.|++.. ++.++++.-.++.+.++
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~--g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLD--GFGDYEGITYLG-NGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-S--S-SSEEEEEE-S-TTEEEEEETTTTEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCC--CCCCceeEEEEC-CCEEEEEEcCCCcEEEE
Confidence            445555679999999956677888888888888886 58888877631  235678899985 66766666668999999


Q ss_pred             eccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCce
Q 022590          128 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD  205 (294)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  205 (294)
                      ++..........            ............+...+-.++|+  ++.|+++-...-..+|.++......   ...
T Consensus        92 ~~~~~~~~~~~~------------~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~---~~~  156 (248)
T PF06977_consen   92 TIDDDTTSLDRA------------DVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF---DLF  156 (248)
T ss_dssp             EE----TT--EE------------EEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS-----E
T ss_pred             EEeccccccchh------------hceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc---cee
Confidence            986522111100            00011111122355668899998  5667777776666777665411000   000


Q ss_pred             ee-----eeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccccc-----CCCeEEEEEccCCC
Q 022590          206 IL-----QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS-----KSPIRQTAMSYDGS  275 (294)
Q Consensus       206 ~~-----~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~  275 (294)
                      ..     .........+.++.+.|... .+++.+.....|..+| .+++.+....+....|     -...-.|+|.++|+
T Consensus       157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~-~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~  234 (248)
T PF06977_consen  157 VSDDQDLDDDKLFVRDLSGLSYDPRTG-HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN  234 (248)
T ss_dssp             EEE-HHHH-HT--SS---EEEEETTTT-EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred             eccccccccccceeccccceEEcCCCC-eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence            00     00112234577889998865 6777788899999999 5555545555542211     24578999999996


Q ss_pred             EEEEeccCCcEEEE
Q 022590          276 TILSCCEDGAIWRW  289 (294)
Q Consensus       276 ~l~s~~~dg~i~vw  289 (294)
                      +.+++ +-+..+++
T Consensus       235 LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  235 LYIVS-EPNLFYRF  247 (248)
T ss_dssp             EEEEE-TTTEEEEE
T ss_pred             EEEEc-CCceEEEe
Confidence            55554 56655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.85  E-value=8.6e-07  Score=70.33  Aligned_cols=88  Identities=17%  Similarity=0.242  Sum_probs=69.4

Q ss_pred             EEEEcCCccccc----eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCC
Q 022590           36 RVIDVSNEKLHK----SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD  111 (294)
Q Consensus        36 ~iw~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~  111 (294)
                      .+|+...++..+    ++ .....|.+++++| +...|+.|+.||+|.+||...+..... +    ..-.++.++|+| +
T Consensus       239 ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----a~~~P~~iaWHp-~  310 (545)
T PF11768_consen  239 CIYECSRNKLQRVSVTSI-PLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTLLA-K----AEFIPTLIAWHP-D  310 (545)
T ss_pred             EEEEeecCceeEEEEEEE-ecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeeeee-e----ecccceEEEEcC-C
Confidence            456665443221    12 3678899999999 888999999999999999976644332 3    556789999999 9


Q ss_pred             CceEEeeecCCcEEEEeccc
Q 022590          112 IYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus       112 ~~~l~~~~~dg~i~~wd~~~  131 (294)
                      +.++++|+.-|.+.+||+.-
T Consensus       311 gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  311 GAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             CcEEEEEcCCceEEEEEeec
Confidence            99999999999999999986

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.85  E-value=4.6e-06  Score=69.11  Aligned_cols=197  Identities=13%  Similarity=0.160  Sum_probs=128.3

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcc-eEEEEeCCCCCceEEEeeCCCc-----EEEEEcCCC------c
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS-INEIRTQPLKPSLVVSASKDES-----VRLWNVQTG------I   87 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~dg~-----i~vwd~~~~------~   87 (294)
                      +.+. .++.|+.+|.|.+++ ..-+.++.++.+... |..+.... +..+|++.+.|+.     ++||+++.-      .
T Consensus        33 s~~~-~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   33 SSTG-SVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             CCCc-eEEEeeccccEEEec-ccceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            5565 899999999998887 344555778888777 55554443 5578888877654     899998642      2


Q ss_pred             eE---EEeeccCC-CCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           88 CI---LIFAGAGG-HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        88 ~~---~~~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      ++   +.+....+ ...++.+++.+. +-..+|+|-.||.|..+.-.-.+..                   .........
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDr-------------------gsr~~~~~~  169 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDR-------------------GSRQDYSHR  169 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhcc-------------------ccceeeecc
Confidence            33   22221111 356789999998 7788999999999998864431110                   112223334


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      -..+|+.+.+.  +..++-......|.+|.+....        ........+..++.+..+++...  -+++++ +..+.
T Consensus       170 ~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~--------p~~~~ld~~G~~lnCss~~~~t~--qfIca~-~e~l~  238 (933)
T KOG2114|consen  170 GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT--------PSLKVLDNNGISLNCSSFSDGTY--QFICAG-SEFLY  238 (933)
T ss_pred             CCCCceeeEEecCCceeEEEEecceeEEEEecCCC--------cceeeeccCCccceeeecCCCCc--cEEEec-CceEE
Confidence            56789999885  4442333344678999988322        24555777788888888888763  244443 35699


Q ss_pred             EEeccCCCc
Q 022590          242 VWELQSSPP  250 (294)
Q Consensus       242 i~d~~~~~~  250 (294)
                      +|+....++
T Consensus       239 fY~sd~~~~  247 (933)
T KOG2114|consen  239 FYDSDGRGP  247 (933)
T ss_pred             EEcCCCcce
Confidence            999886553

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.80  E-value=4.7e-09  Score=86.49  Aligned_cols=197  Identities=13%  Similarity=0.160  Sum_probs=125.2

Q ss_pred             cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC-
Q 022590           44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-  122 (294)
Q Consensus        44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-  122 (294)
                      +..+++..|....+|++|+- +.++|+.|+..|.|+++++.+|.......   +|..+|+.+.-+. ++..+++.+.-. 
T Consensus      1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~n---cH~SavT~vePs~-dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVN---CHQSAVTLVEPSV-DGSTQLTSSSSSS 1166 (1516)
T ss_pred             ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCcccccccc---ccccccccccccC-CcceeeeeccccC
Confidence            34566778889999999999 88999999999999999999999888777   7999999999998 666665554333 


Q ss_pred             -cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCC
Q 022590          123 -TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP  199 (294)
Q Consensus       123 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~  199 (294)
                       ...+|++..-                      ..+...+    ..-.++.|+  -..-+.|+......+||+++.....
T Consensus      1167 PlsaLW~~~s~----------------------~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ 1220 (1516)
T KOG1832|consen 1167 PLSALWDASST----------------------GGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQ 1220 (1516)
T ss_pred             chHHHhccccc----------------------cCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHH
Confidence             4688998761                      1111111    122345554  2223344445678999999876311


Q ss_pred             CCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590          200 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS  279 (294)
Q Consensus       200 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  279 (294)
                      .     .+.........-+...|+|+..  +++   .||  .+||++..+.  +.++..  . ..-..-.|+|.|.-++.
T Consensus      1221 t-----ylt~~~~~~y~~n~a~FsP~D~--LIl---ndG--vLWDvR~~~a--Ih~FD~--f-t~~~~G~FHP~g~eVII 1283 (1516)
T KOG1832|consen 1221 T-----YLTDTVTSSYSNNLAHFSPCDT--LIL---NDG--VLWDVRIPEA--IHRFDQ--F-TDYGGGGFHPSGNEVII 1283 (1516)
T ss_pred             H-----hcCcchhhhhhccccccCCCcc--eEe---eCc--eeeeeccHHH--Hhhhhh--h-eecccccccCCCceEEe
Confidence            1     1111111122235678999884  443   345  4799988642  233221  0 11223458888887776


Q ss_pred             eccCCcEEEEecCC
Q 022590          280 CCEDGAIWRWDAIP  293 (294)
Q Consensus       280 ~~~dg~i~vw~~~~  293 (294)
                      -++     |||+++
T Consensus      1284 NSE-----IwD~RT 1292 (1516)
T KOG1832|consen 1284 NSE-----IWDMRT 1292 (1516)
T ss_pred             ech-----hhhhHH
Confidence            653     666653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.80  E-value=7.6e-06  Score=70.38  Aligned_cols=243  Identities=14%  Similarity=0.187  Sum_probs=142.7

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC--
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ--   84 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~--   84 (294)
                      .++.|.++.|-  .+.. -++.+...|.|.+-|.++.... ....-...|.+++|+| +.+.++..+..+++.+-.-.  
T Consensus        67 gd~~i~s~~fl--~d~~-~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT~~f~  141 (1265)
T KOG1920|consen   67 GDDEIVSVQFL--ADTN-SICVITALGDIILVDPETLELE-IVGNVDNGISAASWSP-DEELLALITGRQTLLFMTKDFE  141 (1265)
T ss_pred             CCcceEEEEEe--cccc-eEEEEecCCcEEEEccccccee-eeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEecccc
Confidence            34578888776  6666 7888888999999988776532 2333467899999999 88999888888887665321  


Q ss_pred             --CCceE-------------------EEeeccCC------------------CCCceeEEEEecCCCceEEeee----cC
Q 022590           85 --TGICI-------------------LIFAGAGG------------------HRNEVLSVDFHPSDIYRIASCG----MD  121 (294)
Q Consensus        85 --~~~~~-------------------~~~~~~~~------------------~~~~v~~l~~~~~~~~~l~~~~----~d  121 (294)
                        ..+.+                   ..|.+..+                  ..+.=+.|.|-- ++.++++..    .+
T Consensus       142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~  220 (1265)
T KOG1920|consen  142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETG  220 (1265)
T ss_pred             chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCC
Confidence              11111                   11221000                  111124588886 888888842    23


Q ss_pred             -CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEe---eCCCeEEEecCCCC
Q 022590          122 -NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK---SVDNEIVLWEPKMK  195 (294)
Q Consensus       122 -g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~---~~d~~i~iwd~~~~  195 (294)
                       ..|++||-...-...                  ..+      ...--.+++|-  |..+++-   +.|+.|.+|..+..
T Consensus       221 ~RkirV~drEg~Lns~------------------se~------~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL  276 (1265)
T KOG1920|consen  221 TRKIRVYDREGALNST------------------SEP------VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL  276 (1265)
T ss_pred             ceeEEEecccchhhcc------------------cCc------ccccccceeecCCCCeEeeeeecCCCCcEEEEecCCc
Confidence             789999987311000                  000      11111234442  6666654   34567999987654


Q ss_pred             CCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE---EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590          196 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI---GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY  272 (294)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~  272 (294)
                      .      +......++.....+..++|+.++  ..|++   ......|++|-+.+...-....+....  ...  +.|+|
T Consensus       277 ~------hg~f~l~~p~de~~ve~L~Wns~s--diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~--~~~--~~W~p  344 (1265)
T KOG1920|consen  277 R------HGEFVLPFPLDEKEVEELAWNSNS--DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ--KAL--LMWDP  344 (1265)
T ss_pred             c------ccccccCCcccccchheeeecCCC--CceeeeecccccceEEEEEecCeEEEEEEEEeccc--ccc--ccccC
Confidence            3      222233334444558899999998  46666   444555999999887654444444221  111  77887


Q ss_pred             CC-CEEEEeccCCcEEEEec
Q 022590          273 DG-STILSCCEDGAIWRWDA  291 (294)
Q Consensus       273 ~~-~~l~s~~~dg~i~vw~~  291 (294)
                      .. ..|..-..+|...++++
T Consensus       345 ~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  345 VTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             CCceeEEEEecCCcEEEEEE
Confidence            43 23333336666655554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.78  E-value=1.8e-05  Score=63.37  Aligned_cols=230  Identities=7%  Similarity=0.002  Sum_probs=128.4

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC--Cce
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR--NEV  102 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~v  102 (294)
                      .++.++.+|.+..+|.++|+.+.+.+.......+-...   +..++.+..++.+.-+|..+|+.+..+.......  ...
T Consensus       122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~---~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  198 (394)
T PRK11138        122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS---DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE  198 (394)
T ss_pred             EEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE---CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence            57778889999999999999887766433211111222   2456667888999999999999887775310000  000


Q ss_pred             eEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe-ecCCCceeecceecceEEEe
Q 022590          103 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWLGDFILSK  181 (294)
Q Consensus       103 ~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~  181 (294)
                      .+-...  ++ .++.++.+|.+..+|..++....+........  .       .....+ .....++    ..++.++.+
T Consensus       199 ~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~--~-------~~~~~~~~~~~sP~----v~~~~vy~~  262 (394)
T PRK11138        199 SAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTG--A-------TEIDRLVDVDTTPV----VVGGVVYAL  262 (394)
T ss_pred             CCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCC--c-------cchhcccccCCCcE----EECCEEEEE
Confidence            011111  22 46667778999999988754332211100000  0       000000 0001111    226677777


Q ss_pred             eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccccc
Q 022590          182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS  261 (294)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  261 (294)
                      +.+|.+..+|..+++...         +.+..  ....+.  ..+  ..++.++.+|.+..+|..+++........  ..
T Consensus       263 ~~~g~l~ald~~tG~~~W---------~~~~~--~~~~~~--~~~--~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~  325 (394)
T PRK11138        263 AYNGNLVALDLRSGQIVW---------KREYG--SVNDFA--VDG--GRIYLVDQNDRVYALDTRGGVELWSQSDL--LH  325 (394)
T ss_pred             EcCCeEEEEECCCCCEEE---------eecCC--CccCcE--EEC--CEEEEEcCCCeEEEEECCCCcEEEccccc--CC
Confidence            889999999999876321         11111  111111  123  36777888999999999988644322211  10


Q ss_pred             CCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                       ....+...  .+.+|+.++.||.|++.|.++
T Consensus       326 -~~~~sp~v--~~g~l~v~~~~G~l~~ld~~t  354 (394)
T PRK11138        326 -RLLTAPVL--YNGYLVVGDSEGYLHWINRED  354 (394)
T ss_pred             -CcccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence             11111122  245677888899888887653

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.78  E-value=2.5e-05  Score=58.28  Aligned_cols=242  Identities=14%  Similarity=0.061  Sum_probs=128.6

Q ss_pred             EEEEeecCCCceEEEEeecCCe-EEEEEcCCccccceecccCcceE--EEEeCCCCCceEEEee-----CCCcEEEEEcC
Q 022590           13 TVSWACNVDGIPFLVAGGINGI-IRVIDVSNEKLHKSFVGHGDSIN--EIRTQPLKPSLVVSAS-----KDESVRLWNVQ   84 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~l~s~~-----~dg~i~vwd~~   84 (294)
                      .++..  |.....++.+-.-|+ ..+||..+++....+....+.-.  .-.|++ ++++|++.-     ..|.|-|||..
T Consensus         9 ~~a~~--p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    9 GVAAH--PTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ceeeC--CCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence            34444  644336777776665 67899999988776654333322  267999 888888864     35889999998


Q ss_pred             -CCceEEEeeccCCCCCceeEEEEecCCCceEEeeec-------CCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           85 -TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        85 -~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                       +-+.+..+.   .|.-....+.+.| ++..|+++--       .|.-++ ++.++..    ++.+-.....   .  ..
T Consensus        86 ~~~~ri~E~~---s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kL-Nl~tM~p----sL~~ld~~sG---~--ll  151 (305)
T PF07433_consen   86 RGYRRIGEFP---SHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKL-NLDTMQP----SLVYLDARSG---A--LL  151 (305)
T ss_pred             CCcEEEeEec---CCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceec-ChhhcCC----ceEEEecCCC---c--ee
Confidence             556666776   4666677888999 7765665521       122222 2222111    1110000000   0  00


Q ss_pred             ceEEe--ecCCCceeecceecc-eEEEee-CCC-------eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEccc
Q 022590          157 PVFIA--SVHSNYVDCNRWLGD-FILSKS-VDN-------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  225 (294)
Q Consensus       157 ~~~~~--~~~~~~i~~~~~~~~-~l~~~~-~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  225 (294)
                      ....+  ..|...|.-++++++ .++.+. ..|       -+-+++....-.. .....   .....-..-+-+++++.+
T Consensus       152 ~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~-~~~p~---~~~~~l~~Y~gSIa~~~~  227 (305)
T PF07433_consen  152 EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRL-LPAPE---EQWRRLNGYIGSIAADRD  227 (305)
T ss_pred             eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCccee-ccCCh---HHHHhhCCceEEEEEeCC
Confidence            01112  335666776666522 222222 111       1222222211000 00000   001111345778999999


Q ss_pred             CCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590          226 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED  283 (294)
Q Consensus       226 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  283 (294)
                      +. .+.+++-..|.+.+||..+++.+....+.      .+..++-.+++ ++++.+.-
T Consensus       228 g~-~ia~tsPrGg~~~~~d~~tg~~~~~~~l~------D~cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  228 GR-LIAVTSPRGGRVAVWDAATGRLLGSVPLP------DACGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             CC-EEEEECCCCCEEEEEECCCCCEeeccccC------ceeeeeecCCc-eEEeCCCc
Confidence            84 34466667889999999998744333332      36677777776 66665443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.78  E-value=4.5e-05  Score=60.98  Aligned_cols=71  Identities=15%  Similarity=0.213  Sum_probs=58.9

Q ss_pred             CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ...+.+++++|+.  ..++.|+.||.|.+||...+.....      ...-..+.++|+|+|.++++|+..|.+.+||+.
T Consensus       259 ~s~v~~ca~sp~E--~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  259 PSQVICCARSPSE--DKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             CCcceEEecCccc--ceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            4578899999998  5899999999999999987632211      122457889999999999999999999999985

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.77  E-value=2.7e-05  Score=58.02  Aligned_cols=179  Identities=16%  Similarity=0.134  Sum_probs=106.9

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc-----cCcceEEEEeCCCCCceEEEeeCC--------CcE
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-----HGDSINEIRTQPLKPSLVVSASKD--------ESV   78 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~d--------g~i   78 (294)
                      ..+++. .++|.  ++.+...+ +.++|..+++.......     .....+.+++.| ++++.++....        |.|
T Consensus        43 ~G~~~~-~~~g~--l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v  117 (246)
T PF08450_consen   43 NGMAFD-RPDGR--LYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSV  117 (246)
T ss_dssp             EEEEEE-CTTSE--EEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEE
T ss_pred             ceEEEE-ccCCE--EEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccce
Confidence            344443 15654  55555554 55669888755433332     345789999999 88877766543        456


Q ss_pred             EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCc-eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      ..++.. ++......    .-...+.|+|+| +++ ++++-+..+.|..+++.........                ...
T Consensus       118 ~~~~~~-~~~~~~~~----~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~----------------~~~  175 (246)
T PF08450_consen  118 YRIDPD-GKVTVVAD----GLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSN----------------RRV  175 (246)
T ss_dssp             EEEETT-SEEEEEEE----EESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEE----------------EEE
T ss_pred             EEECCC-CeEEEEec----CcccccceEECC-cchheeecccccceeEEEeccccccceee----------------eee
Confidence            666665 45444333    344578999999 665 4456677888999998752210000                111


Q ss_pred             eEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc-ccCC
Q 022590          158 VFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFH  227 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  227 (294)
                      ........+....++++  |++.++....+.|.++|.+ ++         .+..+..+...+++++|. ++.+
T Consensus       176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~---------~~~~i~~p~~~~t~~~fgg~~~~  238 (246)
T PF08450_consen  176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GK---------LLREIELPVPRPTNCAFGGPDGK  238 (246)
T ss_dssp             EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SC---------EEEEEE-SSSSEEEEEEESTTSS
T ss_pred             EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-cc---------EEEEEcCCCCCEEEEEEECCCCC
Confidence            11222222345667775  7777777788999999987 43         566666666689999994 4543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.75  E-value=3e-06  Score=70.13  Aligned_cols=207  Identities=11%  Similarity=0.090  Sum_probs=123.4

Q ss_pred             ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCc-eeEEEEecCCCceEEeeecCCc-----EEEEe
Q 022590           55 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE-VLSVDFHPSDIYRIASCGMDNT-----VKIWS  128 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~~~~l~~~~~dg~-----i~~wd  128 (294)
                      .++|  |++ ++..++.|+.+|.|.+.+- +-+.+..++   .+... |..+.... +.++|++.+.|+.     +++|+
T Consensus        27 ~isc--~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fq---a~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~   98 (933)
T KOG2114|consen   27 AISC--CSS-STGSVVIGTADGRVVILNS-SFQLIRGFQ---AYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWD   98 (933)
T ss_pred             ceeE--EcC-CCceEEEeeccccEEEecc-cceeeehhe---ecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEec
Confidence            4444  456 6788999999999988764 333445555   46555 44444443 5577888777654     89999


Q ss_pred             ccccccccccceeecCCCCCCCCceeeeceEE--eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCc
Q 022590          129 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI--ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA  204 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  204 (294)
                      +.........            .-.....+..  ....+.++.+++.+  -..+++|-.+|.|..+.=.-...     ..
T Consensus        99 lek~~~n~sP------------~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-----rg  161 (933)
T KOG2114|consen   99 LEKVDKNNSP------------QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-----RG  161 (933)
T ss_pred             ccccCCCCCc------------ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc-----cc
Confidence            9873211100            0000001111  11124455666665  56788999999998885332111     00


Q ss_pred             eeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590          205 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       205 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                      ....-......+|+.+.+..+++.. +.+. .-..|.+|.+.... .....+.  .|+.+++|..+++....+++++.. 
T Consensus       162 sr~~~~~~~~~pITgL~~~~d~~s~-lFv~-Tt~~V~~y~l~gr~-p~~~~ld--~~G~~lnCss~~~~t~qfIca~~e-  235 (933)
T KOG2114|consen  162 SRQDYSHRGKEPITGLALRSDGKSV-LFVA-TTEQVMLYSLSGRT-PSLKVLD--NNGISLNCSSFSDGTYQFICAGSE-  235 (933)
T ss_pred             cceeeeccCCCCceeeEEecCCcee-EEEE-ecceeEEEEecCCC-cceeeec--cCCccceeeecCCCCccEEEecCc-
Confidence            1122222345789999999999632 3333 34569999998543 2233344  677889999999876656666544 


Q ss_pred             cEEEEecC
Q 022590          285 AIWRWDAI  292 (294)
Q Consensus       285 ~i~vw~~~  292 (294)
                      .+.+|+..
T Consensus       236 ~l~fY~sd  243 (933)
T KOG2114|consen  236 FLYFYDSD  243 (933)
T ss_pred             eEEEEcCC
Confidence            48888764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.71  E-value=1.1e-05  Score=64.46  Aligned_cols=230  Identities=11%  Similarity=-0.014  Sum_probs=126.0

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCc----------ce-EEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEee
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGD----------SI-NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA   93 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~----------~v-~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~   93 (294)
                      .+++++.+|.+.-+|.++|+.+........          .+ ..+..   .+..++.++.+|.+.-+|.++|+.+....
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV---AGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE---ECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            678888899999999999987765543210          00 01112   23467778889999999999999887765


Q ss_pred             ccCCCCCceeE-EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecc
Q 022590           94 GAGGHRNEVLS-VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR  172 (294)
Q Consensus        94 ~~~~~~~~v~~-l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  172 (294)
                      .    ...+.+ ....  + ..++.+..++.+..+|..+++.........              +.........++    
T Consensus       148 ~----~~~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~--------------~~~~~~~~~sP~----  202 (394)
T PRK11138        148 V----AGEALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVKWTVNLDV--------------PSLTLRGESAPA----  202 (394)
T ss_pred             C----CCceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecCCC--------------CcccccCCCCCE----
Confidence            2    222221 1221  3 346667778999999998855432221110              000000111111    


Q ss_pred             eecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCcee
Q 022590          173 WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  252 (294)
Q Consensus       173 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  252 (294)
                      ..++.++.++.++.+..+|..+++...............  ......+..+|--....++.++.+|.+..+|..+++...
T Consensus       203 v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~--~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W  280 (394)
T PRK11138        203 TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE--IDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW  280 (394)
T ss_pred             EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc--hhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE
Confidence            124456777888999999988876432111000000000  000000111121001356777789999999999987554


Q ss_pred             eeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          253 IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .....  .    ...+.  ..+..|+.++.+|.+..+|.+
T Consensus       281 ~~~~~--~----~~~~~--~~~~~vy~~~~~g~l~ald~~  312 (394)
T PRK11138        281 KREYG--S----VNDFA--VDGGRIYLVDQNDRVYALDTR  312 (394)
T ss_pred             eecCC--C----ccCcE--EECCEEEEEcCCCeEEEEECC
Confidence            44322  1    11122  234566667777777777664

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=3.6e-06  Score=69.15  Aligned_cols=119  Identities=13%  Similarity=0.184  Sum_probs=89.1

Q ss_pred             ccccCceeEEEEEeec-----------CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC----CCce
Q 022590            4 VDQKEESFYTVSWACN-----------VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL----KPSL   68 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~-----------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~   68 (294)
                      +..|.+.|+...+...           .+|. ++++++.||.|.|-.+.+.+...++. ...++.+++++|+    ..+.
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Ge-y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~  131 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGE-YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQ  131 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCc-eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhh
Confidence            4477888887777643           2588 99999999999999998888777666 5589999999994    2568


Q ss_pred             EEEeeCCCcEEEEEcC---CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccc
Q 022590           69 VVSASKDESVRLWNVQ---TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW  133 (294)
Q Consensus        69 l~s~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~  133 (294)
                      +++|+.-| +.++.-.   ....+ .+.   .-.++|.++.|.   ++++|=+..+| |++||+....
T Consensus       132 fv~GG~ag-lvL~er~wlgnk~~v-~l~---~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~  190 (846)
T KOG2066|consen  132 FVSGGMAG-LVLSERNWLGNKDSV-VLS---EGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQ  190 (846)
T ss_pred             eeecCcce-EEEehhhhhcCccce-eee---cCccceEEEEec---CcEEEEecCCC-cEEEeccccc
Confidence            99999988 7666432   11222 233   467899999995   57787777665 9999998743

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.69  E-value=1.1e-08  Score=81.36  Aligned_cols=208  Identities=13%  Similarity=0.156  Sum_probs=127.6

Q ss_pred             CcceEEEEeCCCCC-ceEEEeeCCCcEEEEEcCCCceE-EEeeccCCCCCceeEEEEecCCCceEEeee----cCCcEEE
Q 022590           53 GDSINEIRTQPLKP-SLVVSASKDESVRLWNVQTGICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCG----MDNTVKI  126 (294)
Q Consensus        53 ~~~v~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~----~dg~i~~  126 (294)
                      ...+.|+++.-... .+++.|..+|.|.+-.++...-- ..+..  ++..+.++++|++-+.+.||+|-    .|..+.+
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp--~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTP--GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecc--cccccccccccccccHHHHHhhhhhhcccCCccc
Confidence            44678888766333 57888999999999888654322 22222  68889999999997778788773    4678999


Q ss_pred             EeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCc
Q 022590          127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA  204 (294)
Q Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~  204 (294)
                      ||+.+.-.....                 .+.... .......+++|.  ..++.+|...+.+.++|+|....       
T Consensus       134 wdi~s~ltvPke-----------------~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-------  188 (783)
T KOG1008|consen  134 WDINSLLTVPKE-----------------SPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-------  188 (783)
T ss_pred             eecccccCCCcc-----------------cccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhh-------
Confidence            999984211100                 011111 122333466775  66788888888999999984321       


Q ss_pred             eeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe-ccCCCceeeeecc-ccccCCCeEEEEEccCCC-EEEEec
Q 022590          205 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE-LQSSPPVLIARLS-HAQSKSPIRQTAMSYDGS-TILSCC  281 (294)
Q Consensus       205 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~-~l~s~~  281 (294)
                         .........+..+...|-.. +++++-. ||.|.+|| ..+-+........ .......+..++|+|... .+++..
T Consensus       189 ---~~~svnTk~vqG~tVdp~~~-nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~  263 (783)
T KOG1008|consen  189 ---SVSSVNTKYVQGITVDPFSP-NYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS  263 (783)
T ss_pred             ---hhhhhhhhhcccceecCCCC-Cceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc
Confidence               11111122345567777332 4666555 99999999 4443322221111 111123589999999643 455555


Q ss_pred             c-CCcEEEEecC
Q 022590          282 E-DGAIWRWDAI  292 (294)
Q Consensus       282 ~-dg~i~vw~~~  292 (294)
                      . .++|+.+|+.
T Consensus       264 RdS~tIrlydi~  275 (783)
T KOG1008|consen  264 RDSITIRLYDIC  275 (783)
T ss_pred             cCcceEEEeccc
Confidence            4 4678998875

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.69  E-value=6.2e-06  Score=51.27  Aligned_cols=104  Identities=14%  Similarity=0.157  Sum_probs=74.4

Q ss_pred             eEEEEEe-ecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           11 FYTVSWA-CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        11 v~~~~~~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      |++++++ +..+|.+.|++|+.|..|++|+-  ...+..+. -.+.|+++.-.. . ..++.+-.+|+|-+|+-  ...+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~-~-~~F~Y~l~NGTVGvY~~--~~Rl   74 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLG-G-GRFAYALANGTVGVYDR--SQRL   74 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcC-C-CEEEEEecCCEEEEEeC--ccee
Confidence            6777766 34566679999999999999984  45566666 346788888776 3 67999999999999985  3334


Q ss_pred             EEeeccCCCCCceeEEEEecCC---CceEEeeecCCcEE
Q 022590           90 LIFAGAGGHRNEVLSVDFHPSD---IYRIASCGMDNTVK  125 (294)
Q Consensus        90 ~~~~~~~~~~~~v~~l~~~~~~---~~~l~~~~~dg~i~  125 (294)
                      ...+    .+..+.++.+..-+   ...|++|-.+|.|-
T Consensus        75 WRiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   75 WRIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            4444    34457777765422   24688998888774

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.66  E-value=2.7e-08  Score=82.20  Aligned_cols=117  Identities=16%  Similarity=0.239  Sum_probs=88.4

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEe-eCCC-cEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-SKDE-SVRLW   81 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg-~i~vw   81 (294)
                      +.+|....+|++|+  .+.+ +|+.|+..|.|+++++.+|........|..+|+-+.=+. ++..+.+. +... -..+|
T Consensus      1097 frd~~~~fTc~afs--~~~~-hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFS--GGTN-HLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             hhccccceeeEEee--cCCc-eEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHh
Confidence            45788999999998  5555 999999999999999999999999999999999999888 55554443 3333 56799


Q ss_pred             EcCC-CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccc
Q 022590           82 NVQT-GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  132 (294)
Q Consensus        82 d~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~  132 (294)
                      ++.+ +...+.|.       .-.++.|+. ....-+.|..-....+||+.+.
T Consensus      1173 ~~~s~~~~~Hsf~-------ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFD-------EDKAVKFSN-SLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred             ccccccCcccccc-------ccceeehhh-hHHHHHhcccccceEEEecccC
Confidence            9864 33444443       346788986 4444455555567899999984

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=8.4e-07  Score=73.42  Aligned_cols=108  Identities=9%  Similarity=0.167  Sum_probs=84.5

Q ss_pred             EEEeecCCCceEEEEeec----CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           14 VSWACNVDGIPFLVAGGI----NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~----dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      .+|.  |... ++|+++.    .|.|.||- ++|++.+... ..-.+++++|+| ..-.|+.|-.-|.+.+|...+.+.-
T Consensus        21 ~SWH--PseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   21 SSWH--PSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccC--CCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCceee
Confidence            4565  6665 8888764    58899985 6777544332 223457799999 7778999999999999998776655


Q ss_pred             EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           90 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        90 ~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      ....   .|..+|..+.|+| +|..++++..-|.+.+|....
T Consensus        95 tv~~---th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   95 TVVE---THPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             eecc---CCCCCceeEEecC-CCCeEEEcCCCceeEEEEeee
Confidence            4444   5999999999999 899999999999999998874

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.54  E-value=6.4e-07  Score=72.30  Aligned_cols=116  Identities=15%  Similarity=0.133  Sum_probs=86.9

Q ss_pred             ceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          167 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       167 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      ..+|++-.+++++.|+.-|.+++|+-..++..        .....+....+..+..+++.  .++|+|+..|.|.++-++
T Consensus        37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~--------~~~~~~~~~~~~~~~vs~~e--~lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR--------KLKNEGATGITCVRSVSSVE--YLVAAGTASGRVSVFQLN  106 (726)
T ss_pred             EEEEeecCCceEEEecccceEEEEecCchhhh--------cccccCccceEEEEEecchh--HhhhhhcCCceEEeehhh
Confidence            34555556999999999999999998776531        22222244556667777777  588999999999999998


Q ss_pred             CCCceeeeecc--ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          247 SSPPVLIARLS--HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       247 ~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ...+.......  +..|...|++++|++++..|++|...|.|..-.+.
T Consensus       107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  107 KELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             ccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence            86544333333  33468899999999999999999999998776554

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.53  E-value=0.00022  Score=55.46  Aligned_cols=221  Identities=12%  Similarity=0.140  Sum_probs=125.5

Q ss_pred             CeEEEEEcCCccccceeccc-CcceEEE---EeCCC---CCceEEEeeC----------CCcEEEEEcCCC----ceEEE
Q 022590           33 GIIRVIDVSNEKLHKSFVGH-GDSINEI---RTQPL---KPSLVVSASK----------DESVRLWNVQTG----ICILI   91 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h-~~~v~~~---~~~~~---~~~~l~s~~~----------dg~i~vwd~~~~----~~~~~   91 (294)
                      +.|++.|..+.+.+.++.-. ...++++   .+...   ...+++.|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            36888888887776655432 2334443   34431   1467777753          288999999884    22222


Q ss_pred             eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeec
Q 022590           92 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  171 (294)
Q Consensus        92 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  171 (294)
                      +.. ....++|++++-.  ++. |+++. ++.|.+|++....                     .............+.++
T Consensus        82 i~~-~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~~---------------------~l~~~~~~~~~~~i~sl  135 (321)
T PF03178_consen   82 IHS-TEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNSK---------------------TLLKKAFYDSPFYITSL  135 (321)
T ss_dssp             EEE-EEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETTS---------------------SEEEEEEE-BSSSEEEE
T ss_pred             EEE-EeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCcc---------------------cchhhheecceEEEEEE
Confidence            211 1367889999877  445 43333 5899999999732                     01111222233367777


Q ss_pred             ceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC--
Q 022590          172 RWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP--  249 (294)
Q Consensus       172 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--  249 (294)
                      ...++++++|.....+.++..+....     ....+. .......++++.|-+++  ..+++++.+|.+.++......  
T Consensus       136 ~~~~~~I~vgD~~~sv~~~~~~~~~~-----~l~~va-~d~~~~~v~~~~~l~d~--~~~i~~D~~gnl~~l~~~~~~~~  207 (321)
T PF03178_consen  136 SVFKNYILVGDAMKSVSLLRYDEENN-----KLILVA-RDYQPRWVTAAEFLVDE--DTIIVGDKDGNLFVLRYNPEIPN  207 (321)
T ss_dssp             EEETTEEEEEESSSSEEEEEEETTTE------EEEEE-EESS-BEEEEEEEE-SS--SEEEEEETTSEEEEEEE-SS-SS
T ss_pred             eccccEEEEEEcccCEEEEEEEccCC-----EEEEEE-ecCCCccEEEEEEecCC--cEEEEEcCCCeEEEEEECCCCcc
Confidence            77799999999888888875543110     111222 22234557788888776  389999999999999987421  


Q ss_pred             ----c-eeeeeccccccCCCeEEE---EEccC--CC------EEEEeccCCcEEE
Q 022590          250 ----P-VLIARLSHAQSKSPIRQT---AMSYD--GS------TILSCCEDGAIWR  288 (294)
Q Consensus       250 ----~-~~~~~~~~~~~~~~v~~~---~~s~~--~~------~l~s~~~dg~i~v  288 (294)
                          . ..... ..-.....|+++   ++.|.  +.      .++-++.+|.|.+
T Consensus       208 ~~~~~~~L~~~-~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  208 SRDGDPKLERI-SSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             TTTTTTBEEEE-EEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             cccccccceeE-EEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence                1 11111 111233567777   55552  22      4777888998873

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.51  E-value=8.4e-05  Score=55.54  Aligned_cols=158  Identities=15%  Similarity=0.173  Sum_probs=99.5

Q ss_pred             ecCCCceEEEEeec-----CCeEEEEEcC-CccccceecccCcceEEEEeCCCCCceEEEe------------------e
Q 022590           18 CNVDGIPFLVAGGI-----NGIIRVIDVS-NEKLHKSFVGHGDSINEIRTQPLKPSLVVSA------------------S   73 (294)
Q Consensus        18 ~~~~~~~~l~~~~~-----dg~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~------------------~   73 (294)
                      |++||+ +|++.-.     .|.|-|||.. +.+.+.++..|.-.-..+.+.| +++.|+.+                  .
T Consensus        58 fs~dG~-~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~t  135 (305)
T PF07433_consen   58 FSPDGR-LLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDT  135 (305)
T ss_pred             EcCCCC-EEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhh
Confidence            359999 7777543     4899999998 6677788888877778899999 77666654                  2


Q ss_pred             CCCcEEEEEcCCCceEEEeecc-CCCCCceeEEEEecCCCceEEeeecCCc-------EEEEeccccccccccceeecCC
Q 022590           74 KDESVRLWNVQTGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNT-------VKIWSMKEFWTYVEKSFTWTDL  145 (294)
Q Consensus        74 ~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~-------i~~wd~~~~~~~~~~~~~~~~~  145 (294)
                      .+..+...|..+|+.+...... .-|...|..|++.+ ++..++..-..|.       +-+++....             
T Consensus       136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-------------  201 (305)
T PF07433_consen  136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGA-------------  201 (305)
T ss_pred             cCCceEEEecCCCceeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCc-------------
Confidence            2345666677788877664321 13677899999998 6664443322221       222222210             


Q ss_pred             CCCCCCceeeeceEEeecCCCceeeccee--cceE-EEeeCCCeEEEecCCCCC
Q 022590          146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKE  196 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~  196 (294)
                           ......+......-.+++-+++++  +..+ +++-..+.+.+||..++.
T Consensus       202 -----~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~  250 (305)
T PF07433_consen  202 -----LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR  250 (305)
T ss_pred             -----ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence                 000111112223345778888886  4445 566678899999999876

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.51  E-value=0.0002  Score=54.33  Aligned_cols=237  Identities=12%  Similarity=0.047  Sum_probs=123.5

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEee------
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA------   93 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~------   93 (294)
                      ..++ .|+.|+.+| +.+++.........+. +...|..+...| +-+.|++-+ |+.+.++++..-.......      
T Consensus         5 ~~~~-~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGD-RLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCC-EEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            3455 899999998 8999983332222222 233499999999 555555443 4999999987654433110      


Q ss_pred             -----ccCCCCCceeEEE-EecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           94 -----GAGGHRNEVLSVD-FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        94 -----~~~~~~~~v~~l~-~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                           ........+...+ -....+...++......|.+|..........                  ..... ..-+..
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~------------------~~~ke-~~lp~~  140 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS------------------KLLKE-ISLPDP  140 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccc------------------ceeEE-EEcCCC
Confidence                 0001233444444 1122333444455566999998876211000                  11111 223477


Q ss_pred             eeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCcee---eeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          168 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI---LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       168 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      +..+.|.++.++.|..+ ...+.|+.++...........   .........++..+.... +  .+|++-  +..-.+.|
T Consensus       141 ~~~i~~~~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--e~Ll~~--~~~g~fv~  214 (275)
T PF00780_consen  141 PSSIAFLGNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-N--EFLLCY--DNIGVFVN  214 (275)
T ss_pred             cEEEEEeCCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-c--eEEEEe--cceEEEEc
Confidence            88888888888888754 478888886542111000000   000001112233333332 2  455543  33334444


Q ss_pred             ccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          245 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .... +.....+..   .....++++.  ..||+..+.++ |.||++.+
T Consensus       215 ~~G~-~~r~~~i~W---~~~p~~~~~~--~pyli~~~~~~-iEV~~~~~  256 (275)
T PF00780_consen  215 KNGE-PSRKSTIQW---SSAPQSVAYS--SPYLIAFSSNS-IEVRSLET  256 (275)
T ss_pred             CCCC-cCcccEEEc---CCchhEEEEE--CCEEEEECCCE-EEEEECcC
Confidence            4333 222222221   1345566663  35888876655 99999875

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.50  E-value=0.00017  Score=52.92  Aligned_cols=206  Identities=8%  Similarity=0.070  Sum_probs=109.9

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc-CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~   86 (294)
                      .+.++.|+|.  |+.+.++++....+.|..++. +|+.++.+.-. .+-.-.|++.. ++.++++--.++.+.+.++...
T Consensus        21 ~~e~SGLTy~--pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   21 LDELSGLTYN--PDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             -S-EEEEEEE--TTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE---
T ss_pred             cCCccccEEc--CCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecc
Confidence            4569999998  876658888888999988886 57777776533 24567888876 6767766666899999988432


Q ss_pred             c------eEEEee--ccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           87 I------CILIFA--GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        87 ~------~~~~~~--~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      .      ....+.  ....+...+-.++|.| .++.|+.+-...-..++.++.........            .......
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~------------~~~~~~~  163 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLF------------VSDDQDL  163 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--E------------EEE-HHH
T ss_pred             ccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCcccee------------ecccccc
Confidence            1      112222  1113556789999999 55556666666667777776511000000            0000000


Q ss_pred             EEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC---------CCeeEEEEcccC
Q 022590          159 FIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE---------CDIWFIKFSCDF  226 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~  226 (294)
                      .........+.++.++   +++++.+..+..|..+|.. ++         .+..+....         ...-.++|.++|
T Consensus       164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~---------~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G  233 (248)
T PF06977_consen  164 DDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GR---------VVSSLSLDRGFHGLSKDIPQPEGIAFDPDG  233 (248)
T ss_dssp             H-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT------------EEEEEE-STTGGG-SS---SEEEEEE-TT-
T ss_pred             ccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CC---------EEEEEEeCCcccCcccccCCccEEEECCCC
Confidence            0011223345666665   6678888888889889843 32         233333222         346678999988


Q ss_pred             CcceEEEEcCCCeEEEE
Q 022590          227 HYNAAAIGNREGKIFVW  243 (294)
Q Consensus       227 ~~~~l~~~~~dg~i~i~  243 (294)
                      .   |+..++-+..++|
T Consensus       234 ~---LYIvsEpNlfy~f  247 (248)
T PF06977_consen  234 N---LYIVSEPNLFYRF  247 (248)
T ss_dssp             ----EEEEETTTEEEEE
T ss_pred             C---EEEEcCCceEEEe
Confidence            3   4455566655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.48  E-value=6.7e-05  Score=58.26  Aligned_cols=186  Identities=13%  Similarity=0.070  Sum_probs=109.9

Q ss_pred             CcEEEEEcCCCceEEEeeccCCCCCceeEEEEec---C---CCceEEeeec----------CCcEEEEeccccccccccc
Q 022590           76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP---S---DIYRIASCGM----------DNTVKIWSMKEFWTYVEKS  139 (294)
Q Consensus        76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~---~---~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~  139 (294)
                      +.|++.|..+.+.+..+.-  .....+.+++...   .   ...+|++|..          .|.|.++++....      
T Consensus         2 s~i~l~d~~~~~~~~~~~l--~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~------   73 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFEL--EPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP------   73 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEE--ETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-------
T ss_pred             cEEEEEeCCCCeEEEEEEC--CCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccc------
Confidence            3588889888887766654  2334455554322   1   1567777753          2889999998730      


Q ss_pred             eeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590          140 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF  219 (294)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~  219 (294)
                                 ..............+++|.++..-++.++++. ++.|.+|++...+      ..........+ ..+.+
T Consensus        74 -----------~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~------~l~~~~~~~~~-~~i~s  134 (321)
T PF03178_consen   74 -----------ENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSK------TLLKKAFYDSP-FYITS  134 (321)
T ss_dssp             ---------------EEEEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTS------SEEEEEEE-BS-SSEEE
T ss_pred             -----------ccceEEEEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcc------cchhhheecce-EEEEE
Confidence                       00001122223345788888887766655544 5899999998765      11122222222 23444


Q ss_pred             EEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          220 IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       220 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +  ...+  +++++|+....+.++..+.... ....+........++++.+-++++.++.+..+|.+.++...+
T Consensus       135 l--~~~~--~~I~vgD~~~sv~~~~~~~~~~-~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  135 L--SVFK--NYILVGDAMKSVSLLRYDEENN-KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             E--EEET--TEEEEEESSSSEEEEEEETTTE--EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             E--eccc--cEEEEEEcccCEEEEEEEccCC-EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            4  4444  4899999988899887765322 122222122345688999987767999999999999998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.45  E-value=1.4e-05  Score=64.85  Aligned_cols=152  Identities=9%  Similarity=0.072  Sum_probs=102.8

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee-cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ..|.--++.  ..++ +++.|+.-|.+++|+-..++....- .+..+.+..+..++ +..++|.|+..|.|.++-+..+.
T Consensus        34 ~~v~lTc~d--st~~-~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~  109 (726)
T KOG3621|consen   34 ARVKLTCVD--ATEE-YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKEL  109 (726)
T ss_pred             ceEEEEEee--cCCc-eEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccC
Confidence            344444554  5676 9999999999999997666543322 22445666777888 77889999999999999887643


Q ss_pred             eEE---EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           88 CIL---IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        88 ~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      ...   .-..-..|...|++++|++ ++..+++|...|+|.+-.+....                   ....+...+..-
T Consensus       110 p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~-------------------~~~~~~q~il~~  169 (726)
T KOG3621|consen  110 PRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQ-------------------AFLSKSQEILSE  169 (726)
T ss_pred             CCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhh-------------------hhccccceeecc
Confidence            221   1111124788999999999 99999999999999988877610                   002223334445


Q ss_pred             CCceeecceecceEEEeeCC
Q 022590          165 SNYVDCNRWLGDFILSKSVD  184 (294)
Q Consensus       165 ~~~i~~~~~~~~~l~~~~~d  184 (294)
                      ...|..+.+...+|++++.-
T Consensus       170 ds~IVQlD~~q~~LLVStl~  189 (726)
T KOG3621|consen  170 DSEIVQLDYLQSYLLVSTLT  189 (726)
T ss_pred             CcceEEeecccceehHhhhh
Confidence            56677777765555554443

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.7e-06  Score=69.17  Aligned_cols=94  Identities=13%  Similarity=0.182  Sum_probs=79.4

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceE-EEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      -.|.-+.|+  |.-. ++|.+..+|.|.+..+. .+.+.++.-|..+++ +++|.| +|++||.|-.||+|++.|++++.
T Consensus        21 ~~i~~~ewn--P~~d-LiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWN--PKMD-LIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEc--Cccc-hhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCC
Confidence            356778898  6666 99999999999999987 777788887888888 999999 89999999999999999999998


Q ss_pred             eEEEeeccCCCCCceeEEEEec
Q 022590           88 CILIFAGAGGHRNEVLSVDFHP  109 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~  109 (294)
                      .+..+..  ....+|.++.|.+
T Consensus        96 ~l~~~~~--s~e~~is~~~w~~  115 (665)
T KOG4640|consen   96 RLVSFLF--SVETDISKGIWDR  115 (665)
T ss_pred             ceecccc--ccccchheeeccc
Confidence            8877321  2667889999975

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.31  E-value=0.0012  Score=54.43  Aligned_cols=237  Identities=14%  Similarity=0.080  Sum_probs=124.7

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcc--eEEEEeCCC-CCceEEEee---------CCCcEEEEEcCCCceEEEe
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDS--INEIRTQPL-KPSLVVSAS---------KDESVRLWNVQTGICILIF   92 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~--v~~~~~~~~-~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~   92 (294)
                      .++.++.+|.|+-+|.++++.+..+......  -..+.-+|. .+.+++.++         .+|.+.-+|..+|+.+-.+
T Consensus       112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~  191 (488)
T cd00216         112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF  191 (488)
T ss_pred             eEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence            6888889999999999999988776543221  001111110 113444443         3678999999999988877


Q ss_pred             eccCCCC-----------------Cce-eEEEEecCCCceEEeeecCC------------------cEEEEecccccccc
Q 022590           93 AGAGGHR-----------------NEV-LSVDFHPSDIYRIASCGMDN------------------TVKIWSMKEFWTYV  136 (294)
Q Consensus        93 ~~~~~~~-----------------~~v-~~l~~~~~~~~~l~~~~~dg------------------~i~~wd~~~~~~~~  136 (294)
                      .......                 ..+ ....+.+ .+..++.++.++                  .+.-+|..+++..-
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         192 YTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            5311000                 001 1234444 445566666554                  67778887754332


Q ss_pred             ccceeecCCCCCCCCceeeeceEEeecCCCc-eeec-ceec---ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee
Q 022590          137 EKSFTWTDLPSKFPTKYVQFPVFIASVHSNY-VDCN-RWLG---DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP  211 (294)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~-~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  211 (294)
                      .........             ........+ +..+ ..++   ..++.++.+|.+...|.++++...         ...
T Consensus       271 ~~~~~~~~~-------------~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W---------~~~  328 (488)
T cd00216         271 FYQTTPHDL-------------WDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLIS---------ARP  328 (488)
T ss_pred             EeeCCCCCC-------------cccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEee---------EeE
Confidence            221110000             000000000 0011 0122   267788889999999999887422         111


Q ss_pred             cCCCCeeEEEEcccCCcceEEE------------------EcCCCeEEEEeccCCCceeeeeccccccC----CCe--EE
Q 022590          212 VPECDIWFIKFSCDFHYNAAAI------------------GNREGKIFVWELQSSPPVLIARLSHAQSK----SPI--RQ  267 (294)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~~l~~------------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~v--~~  267 (294)
                      ..   ...+..+| +   .++.                  ...+|.+.-.|+.+++.+.........+.    .+.  ..
T Consensus       329 ~~---~~~~~~~~-~---~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~  401 (488)
T cd00216         329 EV---EQPMAYDP-G---LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGS  401 (488)
T ss_pred             ee---ccccccCC-c---eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcc
Confidence            10   00122222 1   1222                  22467888888888876555544310000    111  11


Q ss_pred             EEEccCCCEEEEeccCCcEEEEecCC
Q 022590          268 TAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       268 ~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +.  ..+.+|+.++.||.|+.+|.++
T Consensus       402 ~~--~~g~~v~~g~~dG~l~ald~~t  425 (488)
T cd00216         402 LA--TAGNLVFAGAADGYFRAFDATT  425 (488)
T ss_pred             eE--ecCCeEEEECCCCeEEEEECCC
Confidence            22  2456888889999999988764

The alignment model contains an 8-bladed beta-propeller.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.31  E-value=0.00015  Score=45.24  Aligned_cols=68  Identities=13%  Similarity=0.129  Sum_probs=52.9

Q ss_pred             eEEEEeCCC---CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           56 INEIRTQPL---KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        56 v~~~~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      |++|++...   +.+.|++|+.|..||+|+-  .+.+..+.    -.+.|++|+-.. . ..|+.+-.+|+|-+|+-..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~----e~~~v~~L~~~~-~-~~F~Y~l~NGTVGvY~~~~   72 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT----ETDKVTSLCSLG-G-GRFAYALANGTVGVYDRSQ   72 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe----cccceEEEEEcC-C-CEEEEEecCCEEEEEeCcc
Confidence            667776553   3368999999999999984  46777776    567788888875 4 6699999999999997654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.27  E-value=0.0003  Score=59.86  Aligned_cols=148  Identities=10%  Similarity=0.018  Sum_probs=93.5

Q ss_pred             CCceEEE-eeCCCcEEEEEcCCCceEEEeeccCCCCC-ceeEEEEec----CCCceEEeeecCCcEEEEecccccccccc
Q 022590           65 KPSLVVS-ASKDESVRLWNVQTGICILIFAGAGGHRN-EVLSVDFHP----SDIYRIASCGMDNTVKIWSMKEFWTYVEK  138 (294)
Q Consensus        65 ~~~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~v~~l~~~~----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  138 (294)
                      +.++|+. ......|.-.|++.|+.+..+..   |.. +|..++-..    -.+..-+.|-.+..+..||.|....... 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~---~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v-  567 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKV---HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV-  567 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeec---CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-
Confidence            4444443 34567899999999999999984   443 355554321    1233456677788999999996321000 


Q ss_pred             ceeecCCCCCCCCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCe
Q 022590          139 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDI  217 (294)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i  217 (294)
                                      .. ............|++-. ..+||+|+.+|.||+||-- +.        .....+++-..+|
T Consensus       568 ----------------~~-~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~--------~AKT~lp~lG~pI  621 (794)
T PF08553_consen  568 ----------------DS-QSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GK--------RAKTALPGLGDPI  621 (794)
T ss_pred             ----------------ec-cccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-ch--------hhhhcCCCCCCCe
Confidence                            00 00011233445555555 6799999999999999942 22        1344556667899


Q ss_pred             eEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          218 WFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       218 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      ..+..+.||+  ++++.+ +..+.+++.
T Consensus       622 ~~iDvt~DGk--wilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  622 IGIDVTADGK--WILATC-KTYLLLIDT  646 (794)
T ss_pred             eEEEecCCCc--EEEEee-cceEEEEEE
Confidence            9999999994  555444 556777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.27  E-value=0.0011  Score=53.24  Aligned_cols=49  Identities=12%  Similarity=0.320  Sum_probs=37.5

Q ss_pred             cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      .|.||+. .|+.+..+.-   -.+.|.++.|.. + ..|++...||.++++|+..
T Consensus        62 ~I~iys~-sG~ll~~i~w---~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPW---DSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEEECC-CCCEeEEEEE---CCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCCC
Confidence            4888887 6777776653   227899999986 4 4466777899999999875

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.23  E-value=3.7e-05  Score=64.19  Aligned_cols=70  Identities=17%  Similarity=0.312  Sum_probs=60.6

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      +.++||.  |..- .|+.|-.-|.+.+|...+.+.......|..+|..+.|++ +|..++++..-|.+.+|...
T Consensus        62 atSLCWH--pe~~-vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   62 ATSLCWH--PEEF-VLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             hhhhccC--hHHH-HHhhccccceeEEEecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence            3557775  7765 889999999999999888777666678999999999999 99999999999999999876

>PHA02713 hypothetical protein; Provisional

Probab=98.19  E-value=0.00086  Score=56.10  Aligned_cols=217  Identities=12%  Similarity=0.107  Sum_probs=104.2

Q ss_pred             eEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCC------CcEEEEEcCCCceEEEeeccCCCCCceeEE
Q 022590           34 IIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICILIFAGAGGHRNEVLSV  105 (294)
Q Consensus        34 ~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l  105 (294)
                      .+..||..+++-.  ..+...... .+++..  ++.+++.|+.+      ..+..||..++.-. .+..+...... .++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~-~~~  347 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCR-FSL  347 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhc-eeE
Confidence            4677887765422  222211111 122222  56777788754      34677888766432 22211011111 123


Q ss_pred             EEecCCCceEEeeecCC-----cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEE
Q 022590          106 DFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS  180 (294)
Q Consensus       106 ~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~  180 (294)
                      +..  ++.+.+.||.++     .+..||..+..        |...+             .+.........+..++.+.+.
T Consensus       348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~--------W~~~~-------------~mp~~r~~~~~~~~~g~IYvi  404 (557)
T PHA02713        348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDDK--------WKMLP-------------DMPIALSSYGMCVLDQYIYII  404 (557)
T ss_pred             EEE--CCEEEEECCcCCCCCCceEEEEECCCCe--------EEECC-------------CCCcccccccEEEECCEEEEE
Confidence            332  677888888764     36778876521        11100             000011111222334666666


Q ss_pred             eeCC-----------------------CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          181 KSVD-----------------------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       181 ~~~d-----------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      |+.+                       ..+..||+.+.+-       ..+.........  .....-++  .+.+.|+.+
T Consensus       405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-------~~v~~m~~~r~~--~~~~~~~~--~IYv~GG~~  473 (557)
T PHA02713        405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-------ETLPNFWTGTIR--PGVVSHKD--DIYVVCDIK  473 (557)
T ss_pred             eCCCcccccccccccccccccccccccceEEEECCCCCeE-------eecCCCCccccc--CcEEEECC--EEEEEeCCC
Confidence            6654                       2467788776532       111111111111  11122233  355556543


Q ss_pred             ------CeEEEEeccC-CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC--cEEEEecCC
Q 022590          238 ------GKIFVWELQS-SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG--AIWRWDAIP  293 (294)
Q Consensus       238 ------g~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--~i~vw~~~~  293 (294)
                            ..+..||..+ .+......++  ........+.+  +++..++|+.||  .+..||..+
T Consensus       474 ~~~~~~~~ve~Ydp~~~~~W~~~~~m~--~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        474 DEKNVKTCIFRYNTNTYNGWELITTTE--SRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CCCccceeEEEecCCCCCCeeEccccC--cccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence                  2467899988 5654444443  22222222333  778888999888  677777654

>smart00320 WD40 WD40 repeats

Probab=98.18  E-value=4.8e-06  Score=41.65  Aligned_cols=38  Identities=29%  Similarity=0.632  Sum_probs=32.8

Q ss_pred             cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590           44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus        44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      +....+..|...|.++.|.+ .+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            44566678889999999999 778999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.14  E-value=0.0019  Score=53.35  Aligned_cols=179  Identities=13%  Similarity=0.040  Sum_probs=104.8

Q ss_pred             CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC----cEEEEeccccccccccceeecCCCCCC
Q 022590           74 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTDLPSKF  149 (294)
Q Consensus        74 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~  149 (294)
                      ..+.+.+.|.++.+....+.    -.+....+.++| ++.++++.+.+.    ++..-+....                 
T Consensus       213 y~~~vSvID~etmeV~~qV~----Vdgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~-----------------  270 (635)
T PRK02888        213 YRSLFTAVDAETMEVAWQVM----VDGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAER-----------------  270 (635)
T ss_pred             eeEEEEEEECccceEEEEEE----eCCCcccceECC-CCCEEEEeccCcccCcceeeeccccC-----------------
Confidence            34566777777776666655    333556778888 666666655321    2222222110                 


Q ss_pred             CCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          150 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                            .  .........+..+.-+|++...  .++.|.+.|.++....    ....+..++. ......+.++||++ .
T Consensus       271 ------d--~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~----~~~v~~yIPV-GKsPHGV~vSPDGk-y  334 (635)
T PRK02888        271 ------D--WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANA----GSALTRYVPV-PKNPHGVNTSPDGK-Y  334 (635)
T ss_pred             ------c--eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccC----CcceEEEEEC-CCCccceEECCCCC-E
Confidence                  0  0001111111122223655555  3678999998861100    0124444444 34567899999997 4


Q ss_pred             eEEEEcCCCeEEEEeccCCCcee----------eeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          230 AAAIGNREGKIFVWELQSSPPVL----------IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +++++..++.+.++|+.+.+...          .....  - ...-...+|+++|....|---|..|-.||+..
T Consensus       335 lyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve--v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        335 FIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE--L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec--c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            66677789999999998865311          12221  1 22345688999999888888999999999863

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.14  E-value=0.0015  Score=52.64  Aligned_cols=147  Identities=16%  Similarity=0.181  Sum_probs=77.0

Q ss_pred             CceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590           66 PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL  145 (294)
Q Consensus        66 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  145 (294)
                      |.+|...+. +.|.+||+.+++.+..+.    .. +|..+.|++ ++.+++..+.+ .+.+++........         
T Consensus       117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~----v~-~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~---------  179 (443)
T PF04053_consen  117 GNLLGVKSS-DFICFYDWETGKLIRRID----VS-AVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAA---------  179 (443)
T ss_dssp             SSSEEEEET-TEEEEE-TTT--EEEEES----S--E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHH---------
T ss_pred             CcEEEEECC-CCEEEEEhhHcceeeEEe----cC-CCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhccc---------
Confidence            566666655 479999999999999886    33 489999998 88878877755 78887765421000         


Q ss_pred             CCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEccc
Q 022590          146 PSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  225 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  225 (294)
                         ...............-...|.+..|.++.|+-.+.. .++.  +..++       ...+..+   ..++.-+...+.
T Consensus       180 ---~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge-------~~~i~~l---d~~~yllgy~~~  243 (443)
T PF04053_consen  180 ---IPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGE-------TGIIAHL---DKPLYLLGYLPK  243 (443)
T ss_dssp             ---BTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTE-------EEEEEE----SS--EEEEEETT
T ss_pred             ---ccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCC-------cceEEEc---CCceEEEEEEcc
Confidence               000000112223333357888999987766655555 7766  33332       1233333   445667777775


Q ss_pred             CCcceEEEEcCCCeEEEEeccC
Q 022590          226 FHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       226 ~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      .  +.+.....++.+..+.+..
T Consensus       244 ~--~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  244 E--NRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             T--TEEEEE-TT--EEEEE--H
T ss_pred             C--CEEEEEECCCCEEEEEECH
Confidence            4  4677778888888887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.13  E-value=0.001  Score=55.63  Aligned_cols=225  Identities=14%  Similarity=0.149  Sum_probs=120.3

Q ss_pred             EEEEeecCC------eEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCC------CcEEEEEcCCCceEE
Q 022590           25 FLVAGGING------IIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGICIL   90 (294)
Q Consensus        25 ~l~~~~~dg------~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~~~   90 (294)
                      +++.|+.++      .+..||..+++-.  ..+. ....-.+++..  ++.+.++|+.|      .++..||..+++-..
T Consensus       287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP  363 (571)
T ss_pred             EEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceec
Confidence            778888773      6788888776332  2222 22334455555  45788999998      356778887776333


Q ss_pred             EeeccCCCCCceeEEEEecCCCceEEeeecCCc-----EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT-----VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                       ...+...... .+++..  ++.+.++||.||.     +-.||..+..-                     ..+.......
T Consensus       364 -~a~M~~~R~~-~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W---------------------~~va~m~~~r  418 (571)
T KOG4441|consen  364 -VAPMNTKRSD-FGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW---------------------TPVAPMLTRR  418 (571)
T ss_pred             -cCCccCcccc-ceeEEE--CCEEEEEeccccccccccEEEecCCCCcc---------------------cccCCCCcce
Confidence             2221111111 122222  7888999999864     55566655211                     1111111122


Q ss_pred             CceeecceecceEEEeeCCC------eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590          166 NYVDCNRWLGDFILSKSVDN------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  239 (294)
Q Consensus       166 ~~i~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~  239 (294)
                      .......+.+.+.++|+.++      .+..||..+..-       ..+........... ++.- ++  .+.+.|+.++.
T Consensus       419 ~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-------~~~~~M~~~R~~~g-~a~~-~~--~iYvvGG~~~~  487 (571)
T KOG4441|consen  419 SGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW-------TLIAPMNTRRSGFG-VAVL-NG--KIYVVGGFDGT  487 (571)
T ss_pred             eeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce-------eecCCcccccccce-EEEE-CC--EEEEECCccCC
Confidence            22333444577888888554      577889887642       22222222222111 2222 23  46677776653


Q ss_pred             -----EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCc-----EEEEecC
Q 022590          240 -----IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA-----IWRWDAI  292 (294)
Q Consensus       240 -----i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----i~vw~~~  292 (294)
                           |..||..+.+........  .....+-...  -+++..+.|+.||.     |..||..
T Consensus       488 ~~~~~VE~ydp~~~~W~~v~~m~--~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~  546 (571)
T KOG4441|consen  488 SALSSVERYDPETNQWTMVAPMT--SPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPE  546 (571)
T ss_pred             CccceEEEEcCCCCceeEcccCc--cccccccEEE--ECCEEEEEecccCccccceeEEcCCC
Confidence                 788999888765554333  2222222222  25667778888774     5555543

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.12  E-value=0.0029  Score=50.84  Aligned_cols=218  Identities=14%  Similarity=0.045  Sum_probs=108.0

Q ss_pred             EeecCCCceEEEEeecC----------C-eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590           16 WACNVDGIPFLVAGGIN----------G-IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus        16 ~~~~~~~~~~l~~~~~d----------g-~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      ++..|.|. .+|....+          . .|+||+. .|+++.++.-..+.+.++.|+. + ..|+.-..||+++++|+.
T Consensus        34 va~a~~gG-pIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   34 VAVAPYGG-PIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-D-EELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEcCCCc-eEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECC-C-CeEEEEEcCCEEEEEeCC
Confidence            33446666 55555443          1 5888885 5666666654458999999987 4 456667789999999985


Q ss_pred             CCceEEEeecc------CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccc-cceeecCCCCCCCCceeeec
Q 022590           85 TGICILIFAGA------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE-KSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        85 ~~~~~~~~~~~------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  157 (294)
                       |+.  .+...      .-....+....+.. +|-.++  ..++.+.+.  ........ ....  ..+..         
T Consensus       110 -G~~--~fsl~~~i~~~~v~e~~i~~~~~~~-~GivvL--t~~~~~~~v--~n~~~~~~~~~~~--~~p~~---------  170 (410)
T PF04841_consen  110 -GEF--QFSLGEEIEEEKVLECRIFAIWFYK-NGIVVL--TGNNRFYVV--NNIDEPVKLRRLP--EIPGL---------  170 (410)
T ss_pred             -Cce--eechhhhccccCcccccccccccCC-CCEEEE--CCCCeEEEE--eCccccchhhccc--cCCCc---------
Confidence             443  22210      01111222223332 443333  334444333  32111100 0000  00000         


Q ss_pred             eEEeecCCC--ceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590          158 VFIASVHSN--YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       158 ~~~~~~~~~--~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                      ......+..  .+..+.-+....+....++.+.+.+-...+            ... ..+++..+++||++  .++|.-.
T Consensus       171 ~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~------------~i~-~~~~i~~iavSpng--~~iAl~t  235 (410)
T PF04841_consen  171 WTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK------------QID-SDGPIIKIAVSPNG--KFIALFT  235 (410)
T ss_pred             ccccccccccccceEeecCcceEEEEecCCEEEEEEccccc------------ccc-CCCCeEEEEECCCC--CEEEEEE
Confidence            000000111  011111123344444555666644433211            011 23578999999999  5788888


Q ss_pred             CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590          236 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       236 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (294)
                      .+|.+.+.+..-.+........   .......|.|.-+.
T Consensus       236 ~~g~l~v~ssDf~~~~~e~~~~---~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  236 DSGNLWVVSSDFSEKLCEFDTD---SKSPPKQMAWCGND  271 (410)
T ss_pred             CCCCEEEEECcccceeEEeecC---cCCCCcEEEEECCC
Confidence            8899988876655433333322   22345667776543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.05  E-value=0.0002  Score=56.68  Aligned_cols=159  Identities=17%  Similarity=0.171  Sum_probs=86.3

Q ss_pred             ceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEE
Q 022590          101 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS  180 (294)
Q Consensus       101 ~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~  180 (294)
                      .|+.+.|.+ +...|++|...|.+.+|.....+......               ..+..  .     ...-.+.      
T Consensus         3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~---------------~~~~~--~-----~~~~~~~------   53 (395)
T PF08596_consen    3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNRE---------------QPPDL--D-----YNFRRFS------   53 (395)
T ss_dssp             -EEEEEEET-TTTEEEEEETTS-EEEEEEEE----------------------------------------S--------
T ss_pred             eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccC---------------CCccc--C-----ccccccc------
Confidence            588999999 66679999999999999988732211000               00000  0     0000000      


Q ss_pred             eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc--
Q 022590          181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH--  258 (294)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--  258 (294)
                       ..++.-.+-|+.............+..-+....++|++++.|.-|   +++.|.++|.+.|.|++....+....+..  
T Consensus        54 -~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~  129 (395)
T PF08596_consen   54 -LNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESF  129 (395)
T ss_dssp             -GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--
T ss_pred             -ccCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccc
Confidence             001111222333222111111223444455557889999999777   99999999999999998876544433332  


Q ss_pred             --cccCCCeEEEEEcc-----CC---CEEEEeccCCcEEEEecC
Q 022590          259 --AQSKSPIRQTAMSY-----DG---STILSCCEDGAIWRWDAI  292 (294)
Q Consensus       259 --~~~~~~v~~~~~s~-----~~---~~l~s~~~dg~i~vw~~~  292 (294)
                        ......|+++.|+.     |+   -.|++|...|.+.+|.+-
T Consensus       130 ~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  130 LSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             cccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence              12345688888873     32   478899999999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=98.04  E-value=1e-05  Score=56.79  Aligned_cols=106  Identities=8%  Similarity=0.121  Sum_probs=67.7

Q ss_pred             cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590          175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  254 (294)
Q Consensus       175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  254 (294)
                      +..+++|+.+|.|.+|.......        ....+......+.++ +..-....+..++..+|.|+.|++...+.+.. 
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~--------~~d~~~s~~e~i~~~-Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~-  139 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGA--------HSDRVCSGEESIDLG-IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY-  139 (238)
T ss_pred             CceEEeecccceEEEecCCccch--------HHHhhhcccccceec-cccccccceeEEeccCCceeeeccccCceeee-
Confidence            67899999999999999873221        111111111222221 21111125888999999999999988763322 


Q ss_pred             eccccccC-CCeEEEEEccCCCEEEEe--ccCCcEEEEecCC
Q 022590          255 RLSHAQSK-SPIRQTAMSYDGSTILSC--CEDGAIWRWDAIP  293 (294)
Q Consensus       255 ~~~~~~~~-~~v~~~~~s~~~~~l~s~--~~dg~i~vw~~~~  293 (294)
                       ..  .|. .++..+..+..+++++.+  |.|..++.|+++.
T Consensus       140 -~g--~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  140 -VG--QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             -ec--cccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence             22  333 566667777777888888  8888888998763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.03  E-value=0.0026  Score=51.27  Aligned_cols=224  Identities=11%  Similarity=0.056  Sum_probs=110.9

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL   90 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~   90 (294)
                      ...++++  |+|+ ++++ +.||...|+.....+..     ..+.-...+|.+ .++ +|+-...++|.++.--+.+...
T Consensus        35 p~~ls~n--pngr-~v~V-~g~geY~iyt~~~~r~k-----~~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k  103 (443)
T PF04053_consen   35 PQSLSHN--PNGR-FVLV-CGDGEYEIYTALAWRNK-----AFGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVK  103 (443)
T ss_dssp             -SEEEE---TTSS-EEEE-EETTEEEEEETTTTEEE-----EEEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred             CeeEEEC--CCCC-EEEE-EcCCEEEEEEccCCccc-----ccCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccce
Confidence            3455555  9998 6655 67888889883332221     224456788988 544 6666768899996433333333


Q ss_pred             EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceee
Q 022590           91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC  170 (294)
Q Consensus        91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (294)
                      .+.    ....+..|-.    |.+|...+. +.|.+||+.+                       ...+..+...  +|..
T Consensus       104 ~i~----~~~~~~~If~----G~LL~~~~~-~~i~~yDw~~-----------------------~~~i~~i~v~--~vk~  149 (443)
T PF04053_consen  104 SIK----LPFSVEKIFG----GNLLGVKSS-DFICFYDWET-----------------------GKLIRRIDVS--AVKY  149 (443)
T ss_dssp             --------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT-------------------------EEEEESS---E-EE
T ss_pred             EEc----CCcccceEEc----CcEEEEECC-CCEEEEEhhH-----------------------cceeeEEecC--CCcE
Confidence            443    2223444432    566666654 4899999998                       3334444332  4888


Q ss_pred             ccee--cceEEEeeCCCeEEEecCCCC--CCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          171 NRWL--GDFILSKSVDNEIVLWEPKMK--EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       171 ~~~~--~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      +.|+  +++++..+.+ .+.+++....  ......+....+.....-...|.+..|..+-   ++.+...  .++.  +-
T Consensus       150 V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~---fiYtT~~--~lkY--l~  221 (443)
T PF04053_consen  150 VIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDC---FIYTTSN--HLKY--LV  221 (443)
T ss_dssp             EEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTE---EEEE-TT--EEEE--EE
T ss_pred             EEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCE---EEEEcCC--eEEE--EE
Confidence            9998  6677776654 5666654432  0000011111222232224567788887662   4444432  6665  55


Q ss_pred             CCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          247 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .++......+.     .++.=+.+.|..+.+.....|+.+..+.+.
T Consensus       222 ~Ge~~~i~~ld-----~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  222 NGETGIIAHLD-----KPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             TTEEEEEEE-S-----S--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             cCCcceEEEcC-----CceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            55433333332     456777888877889999999998888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>smart00320 WD40 WD40 repeats

Probab=98.01  E-value=2.6e-05  Score=38.79  Aligned_cols=38  Identities=37%  Similarity=0.567  Sum_probs=31.7

Q ss_pred             ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEe
Q 022590           87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS  128 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd  128 (294)
                      +....+.   .|...|.++.|++ ...++++++.|+.+++|+
T Consensus         3 ~~~~~~~---~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLK---GHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEE---ecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            3445555   5888999999999 778899999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=8.2e-05  Score=59.93  Aligned_cols=74  Identities=16%  Similarity=0.169  Sum_probs=64.8

Q ss_pred             CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee-EEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           53 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        53 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      ...|.-+.|+| ...++|.+..+|.|.+..+. .+.+..+..   |..+++ +++|.| +|+.|++|-.||+|++.|+.+
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~---p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPI---PGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccC---CCCccceeeeecC-CCCEEEEEecCCeEEEEEccC
Confidence            34678899999 88999999999999999997 777777763   666666 999999 899999999999999999998


Q ss_pred             c
Q 022590          132 F  132 (294)
Q Consensus       132 ~  132 (294)
                      +
T Consensus        94 ~   94 (665)
T KOG4640|consen   94 G   94 (665)
T ss_pred             C
Confidence            4

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.96  E-value=0.0029  Score=49.96  Aligned_cols=234  Identities=12%  Similarity=0.118  Sum_probs=117.4

Q ss_pred             cCCCceEEEEe---------ecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           19 NVDGIPFLVAG---------GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        19 ~~~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      |||++ +++..         +..+.+.|||+++++....... ...+....|+| +++.++... ++.|.+++..+++..
T Consensus         1 S~d~~-~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~   76 (353)
T PF00930_consen    1 SPDGK-FVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQET   76 (353)
T ss_dssp             -TTSS-EEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred             CCCCC-eEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeec-CCCeeEEEe-cCceEEEECCCCCeE
Confidence            48888 55542         2346799999998765444443 67889999999 788877765 578999998777544


Q ss_pred             EEeeccC-----CC---------CCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590           90 LIFAGAG-----GH---------RNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  154 (294)
Q Consensus        90 ~~~~~~~-----~~---------~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (294)
                      +......     |-         -+.-..+-|+| +++.|+... .+..++.+.+........                 
T Consensus        77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~-----------------  138 (353)
T PF00930_consen   77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDS-----------------  138 (353)
T ss_dssp             ESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTE-----------------
T ss_pred             EeccccceeEEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccc-----------------
Confidence            3222100     00         12236788999 666666654 456666666554211000                 


Q ss_pred             eeceEEeecCCCceeecceecceEEEeeCCC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          155 QFPVFIASVHSNYVDCNRWLGDFILSKSVDN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       155 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      ..|.         +..+.+    =..|...-  .+.++|+.+++...    ............-+..+.|.+++...++.
T Consensus       139 ~yp~---------~~~~~Y----Pk~G~~np~v~l~v~~~~~~~~~~----~~~~~~~~~~~~yl~~v~W~~d~~~l~~~  201 (353)
T PF00930_consen  139 QYPE---------VESIRY----PKAGDPNPRVSLFVVDLASGKTTE----LDPPNSLNPQDYYLTRVGWSPDGKRLWVQ  201 (353)
T ss_dssp             SS-E---------EEEEE------BTTS---EEEEEEEESSSTCCCE----E---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred             cCCc---------cccccc----CCCCCcCCceEEEEEECCCCcEEE----eeeccccCCCccCcccceecCCCcEEEEE
Confidence            0000         111111    00111112  36668887665310    00000112234557788999998411222


Q ss_pred             EEcCC---CeEEEEeccCCCceeeeeccccccCCCeEEEEEc-cCCC-EEEEeccCCcEEEEec
Q 022590          233 IGNRE---GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGS-TILSCCEDGAIWRWDA  291 (294)
Q Consensus       233 ~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~-~l~s~~~dg~i~vw~~  291 (294)
                      ....+   ..+.++|..+++..........+--..-....+. +++. +|.....||.-+||-+
T Consensus       202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~  265 (353)
T PF00930_consen  202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY  265 (353)
T ss_dssp             EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred             EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence            22222   3466777777655444433322222233455654 5554 5555557776555543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.94  E-value=0.00055  Score=58.38  Aligned_cols=146  Identities=16%  Similarity=0.102  Sum_probs=90.3

Q ss_pred             CCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc-eeeccee-------cceEEEe
Q 022590          111 DIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY-VDCNRWL-------GDFILSK  181 (294)
Q Consensus       111 ~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~-------~~~l~~~  181 (294)
                      +.++|+.. .....|+-.|+..+                       ..+.....+... |..+..+       +...+.|
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~G-----------------------KVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflG  548 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERG-----------------------KVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLG  548 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCC-----------------------cEEEEeecCCCcceeEecccccccccCCCceEEE
Confidence            34444443 34566777777773                       334444444433 4444432       3456677


Q ss_pred             eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccccc
Q 022590          182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS  261 (294)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  261 (294)
                      -.+..+..||+|.......   ......+ .......+++-+.+|   +||+|+.+|.||+||--. . .....  ..+-
T Consensus       549 ls~n~lfriDpR~~~~k~v---~~~~k~Y-~~~~~Fs~~aTt~~G---~iavgs~~G~IRLyd~~g-~-~AKT~--lp~l  617 (794)
T PF08553_consen  549 LSDNSLFRIDPRLSGNKLV---DSQSKQY-SSKNNFSCFATTEDG---YIAVGSNKGDIRLYDRLG-K-RAKTA--LPGL  617 (794)
T ss_pred             ECCCceEEeccCCCCCcee---ecccccc-ccCCCceEEEecCCc---eEEEEeCCCcEEeecccc-h-hhhhc--CCCC
Confidence            7888999999996431000   0011111 234456777777777   799999999999999432 1 12222  3366


Q ss_pred             CCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ..||..|..+.||++|++.+ +..|.+++.
T Consensus       618 G~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  618 GDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            78999999999999988775 445666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.91  E-value=0.0039  Score=45.26  Aligned_cols=105  Identities=20%  Similarity=0.128  Sum_probs=78.0

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR   99 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~   99 (294)
                      ++.+.+++.|+..+.+.--|..+|+.+.+-. -..++.+-+.-  -+++++.|...|.+.+.+..+|+....+..    .
T Consensus        20 ~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~----~   92 (354)
T KOG4649|consen   20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI----L   92 (354)
T ss_pred             cCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeee----h
Confidence            5566699999999999999999998765432 22333333322  246799999999999999999988888873    2


Q ss_pred             CceeEE-EEecCCCceEEeeecCCcEEEEecccc
Q 022590          100 NEVLSV-DFHPSDIYRIASCGMDNTVKIWSMKEF  132 (294)
Q Consensus       100 ~~v~~l-~~~~~~~~~l~~~~~dg~i~~wd~~~~  132 (294)
                      +.|.+- ...+ ++.++..|+.|++.+..|.++.
T Consensus        93 ~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen   93 ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             hhhccceEEcC-CCceEEEecCCCcEEEeccccc
Confidence            333332 2344 7788999999999999999983

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.90  E-value=0.0019  Score=53.34  Aligned_cols=157  Identities=12%  Similarity=0.112  Sum_probs=88.6

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee--------------------------
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS--------------------------   73 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--------------------------   73 (294)
                      |||+.+..+.-..+.+.+.|.++.+...++.-- +...-++++| ++.++++.+                          
T Consensus       202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~  279 (635)
T PRK02888        202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA  279 (635)
T ss_pred             CCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence            466522233333466777777776655554422 2334556666 555554443                          


Q ss_pred             --------------CCCcEEEEEcCC-----CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccc
Q 022590           74 --------------KDESVRLWNVQT-----GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT  134 (294)
Q Consensus        74 --------------~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  134 (294)
                                    .+++|.+.|..+     .+.+..+.    -......+.++|++...++++..+.++.|.|+.+...
T Consensus       280 ~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP----VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        280 RIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP----VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             HHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE----CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence                          235578888777     34444444    5556788999994444555566799999999998554


Q ss_pred             ccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCC
Q 022590          135 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKM  194 (294)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~  194 (294)
                      .....+...           ......... ...-...+|+  |+...+..-|..|..||+..
T Consensus       356 ~~~~~~~~~-----------~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        356 LFDGKIKPR-----------DAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhhccCCcc-----------ceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            332221110           000111111 1112233444  56777778899999999876

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.86  E-value=0.004  Score=45.83  Aligned_cols=192  Identities=14%  Similarity=0.041  Sum_probs=99.9

Q ss_pred             CCCceEEEEeecCC--eEEEEEcCCccccceecccCc-ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC
Q 022590           20 VDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGD-SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG   96 (294)
Q Consensus        20 ~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~   96 (294)
                      .+|. ++-+.+..|  .|+.+|+.+++......-... ---.+...  ++.+..-.-.++...+||..+-+.+..+.   
T Consensus        54 ~~g~-LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~---  127 (264)
T PF05096_consen   54 DDGT-LYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFP---  127 (264)
T ss_dssp             ETTE-EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE---
T ss_pred             CCCE-EEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEe---
Confidence            5676 677777666  789999999987655442211 11223333  34666667788999999999999998887   


Q ss_pred             CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecc
Q 022590           97 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD  176 (294)
Q Consensus        97 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  176 (294)
                       ..+.=+.|+.   ++..|+.+.....++.+|..++.......+.....+        ...+..+....+.|.+-.|..+
T Consensus       128 -y~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p--------v~~LNELE~i~G~IyANVW~td  195 (264)
T PF05096_consen  128 -YPGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP--------VSNLNELEYINGKIYANVWQTD  195 (264)
T ss_dssp             --SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-----------EEEEEEETTEEEEEETTSS
T ss_pred             -cCCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEE--------CCCcEeEEEEcCEEEEEeCCCC
Confidence             4556677774   445566665567899999887544332222211111        1112233444455555555433


Q ss_pred             eEEEe-eCCCe-EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590          177 FILSK-SVDNE-IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       177 ~l~~~-~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                      .++.- -..|. +..+|+........     ..........-.+.+++.|..+ .++++|-
T Consensus       196 ~I~~Idp~tG~V~~~iDls~L~~~~~-----~~~~~~~~~dVLNGIAyd~~~~-~l~vTGK  250 (264)
T PF05096_consen  196 RIVRIDPETGKVVGWIDLSGLRPEVG-----RDKSRQPDDDVLNGIAYDPETD-RLFVTGK  250 (264)
T ss_dssp             EEEEEETTT-BEEEEEE-HHHHHHHT-----STTST--TTS-EEEEEEETTTT-EEEEEET
T ss_pred             eEEEEeCCCCeEEEEEEhhHhhhccc-----ccccccccCCeeEeEeEeCCCC-EEEEEeC
Confidence            33322 22232 23334332110000     0000011135678899999886 6777774

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.83  E-value=0.0035  Score=54.33  Aligned_cols=100  Identities=13%  Similarity=0.243  Sum_probs=73.5

Q ss_pred             EEEEeecCCeEEEEEcCCc-cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590           25 FLVAGGINGIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  103 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  103 (294)
                      .++.|+..|.+...|+... .+...=..-.++|++++|+. ++..++.|-.+|.|.+||+.+++.++.+..   |..+.+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e---~~ap~t  176 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITE---HGAPVT  176 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeee---cCCccc
Confidence            7899999999999887553 22122223467999999998 999999999999999999999999888874   444444


Q ss_pred             EE---EEecCCCceEEeeecCCcEEEEeccc
Q 022590          104 SV---DFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus       104 ~l---~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      .+   .+.. ++..++++...|.  +|.+.-
T Consensus       177 ~vi~v~~t~-~nS~llt~D~~Gs--f~~lv~  204 (1206)
T KOG2079|consen  177 GVIFVGRTS-QNSKLLTSDTGGS--FWKLVF  204 (1206)
T ss_pred             eEEEEEEeC-CCcEEEEccCCCc--eEEEEe
Confidence            43   3443 5567888877776  666543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.83  E-value=0.0063  Score=45.07  Aligned_cols=212  Identities=10%  Similarity=0.138  Sum_probs=123.6

Q ss_pred             ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEe
Q 022590           49 FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS  128 (294)
Q Consensus        49 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd  128 (294)
                      +.+-...+.++.|+| +.+.|++......-.|+=..+|+.+..+....  -...-.|.+.. ++.+.++--.++.+.++.
T Consensus        81 i~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g--~~DpE~Ieyig-~n~fvi~dER~~~l~~~~  156 (316)
T COG3204          81 ILGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG--FSDPETIEYIG-GNQFVIVDERDRALYLFT  156 (316)
T ss_pred             cccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccc--cCChhHeEEec-CCEEEEEehhcceEEEEE
Confidence            344456699999999 66667766666777677777899988876432  23456788886 777777777889999888


Q ss_pred             ccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCC-CCCce
Q 022590          129 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG-EGTAD  205 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~  205 (294)
                      +..........             ....++......+.....++|+  ...|+.+-+-.-+.||.......... .....
T Consensus       157 vd~~t~~~~~~-------------~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~  223 (316)
T COG3204         157 VDADTTVISAK-------------VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLD  223 (316)
T ss_pred             EcCCccEEecc-------------ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccC
Confidence            87632211110             0022222222225566778887  56777777777777777664321100 00000


Q ss_pred             eeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccc-----ccCCCeEEEEEccCCCEEEE
Q 022590          206 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA-----QSKSPIRQTAMSYDGSTILS  279 (294)
Q Consensus       206 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s  279 (294)
                      ........-..+.++.|.+... .+++-+.+++.+.-.|....- .....+...     .....-..++..++|..-++
T Consensus       224 ~~~~~~~f~~DvSgl~~~~~~~-~LLVLS~ESr~l~Evd~~G~~-~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         224 PTADRDLFVLDVSGLEFNAITN-SLLVLSDESRRLLEVDLSGEV-IELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             cccccceEeeccccceecCCCC-cEEEEecCCceEEEEecCCCe-eeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence            0000011123466677876654 577778888888888876552 222222211     11234567888887764443

>PHA02713 hypothetical protein; Provisional

Probab=97.81  E-value=0.0017  Score=54.37  Aligned_cols=68  Identities=7%  Similarity=0.002  Sum_probs=38.0

Q ss_pred             ceecceEEEeeCC------CeEEEecCCC-CCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC--eEEE
Q 022590          172 RWLGDFILSKSVD------NEIVLWEPKM-KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG--KIFV  242 (294)
Q Consensus       172 ~~~~~~l~~~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg--~i~i  242 (294)
                      ..++.+.+.|+.+      ..+..||+.+ .+       +..+..++.+......+.+  ++  .+.++|+.+|  .+..
T Consensus       461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~-------W~~~~~m~~~r~~~~~~~~--~~--~iyv~Gg~~~~~~~e~  529 (557)
T PHA02713        461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNG-------WELITTTESRLSALHTILH--DN--TIMMLHCYESYMLQDT  529 (557)
T ss_pred             EECCEEEEEeCCCCCCccceeEEEecCCCCCC-------eeEccccCcccccceeEEE--CC--EEEEEeeecceeehhh
Confidence            3346666677654      2467899886 32       2223333322222222222  34  5777888887  7888


Q ss_pred             EeccCCCc
Q 022590          243 WELQSSPP  250 (294)
Q Consensus       243 ~d~~~~~~  250 (294)
                      ||..+.+.
T Consensus       530 yd~~~~~W  537 (557)
T PHA02713        530 FNVYTYEW  537 (557)
T ss_pred             cCcccccc
Confidence            88888764

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.77  E-value=0.012  Score=46.80  Aligned_cols=91  Identities=21%  Similarity=0.284  Sum_probs=59.4

Q ss_pred             EEEeecCCCceEEEEeecCCeEEE---EEcCC-c----cccceecc---cC--cceEEEEeCCC----------CCceEE
Q 022590           14 VSWACNVDGIPFLVAGGINGIIRV---IDVSN-E----KLHKSFVG---HG--DSINEIRTQPL----------KPSLVV   70 (294)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~dg~i~i---w~~~~-~----~~~~~~~~---h~--~~v~~~~~~~~----------~~~~l~   70 (294)
                      +.++.+|+++ +||.+..+..+.+   |+... +    .......+   +.  ..|+++.+-|.          +...++
T Consensus         5 ~~isls~~~d-~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~   83 (415)
T PF14655_consen    5 CSISLSPDGD-LLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIA   83 (415)
T ss_pred             ceEEecCCCC-EEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEE
Confidence            4455569999 8888877766655   53311 1    11111111   22  57888777553          457899


Q ss_pred             EeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590           71 SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  109 (294)
Q Consensus        71 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~  109 (294)
                      .|..+|.|++|.. +|..+..-.   -|..+|..|....
T Consensus        84 VG~ssG~vrfyte-~G~LL~~Q~---~h~~pV~~ik~~~  118 (415)
T PF14655_consen   84 VGTSSGYVRFYTE-NGVLLLSQL---LHEEPVLKIKCRS  118 (415)
T ss_pred             EEecccEEEEEec-cchHHHHHh---cCccceEEEEecc
Confidence            9999999999987 666554433   3888999998754

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.77  E-value=0.00023  Score=50.27  Aligned_cols=103  Identities=15%  Similarity=0.145  Sum_probs=70.6

Q ss_pred             EEEEeecCCeEEEEEcCC-ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC-Cce
Q 022590           25 FLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NEV  102 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v  102 (294)
                      -+++|+.+|.|.+|+... +.....+..-...|.++--.-.++.+..+++.||.|+.|++.-++.+....   .|. .++
T Consensus        72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~  148 (238)
T KOG2444|consen   72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESG  148 (238)
T ss_pred             eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeec---cccCCCc
Confidence            699999999999999762 222222222233444443333355688999999999999998887776655   466 556


Q ss_pred             eEEEEecCCCceEEee--ecCCcEEEEeccc
Q 022590          103 LSVDFHPSDIYRIASC--GMDNTVKIWSMKE  131 (294)
Q Consensus       103 ~~l~~~~~~~~~l~~~--~~dg~i~~wd~~~  131 (294)
                      ..+.... .+..++.+  +.|..++.|++..
T Consensus       149 e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVG-SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEec-CCceEEeeccccchhhhhcchhh
Confidence            6666555 55667776  7788888888776

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.77  E-value=0.0083  Score=48.28  Aligned_cols=177  Identities=13%  Similarity=0.019  Sum_probs=94.5

Q ss_pred             eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEe-e--CC-CcEEEEEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590           34 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA-S--KD-ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP  109 (294)
Q Consensus        34 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~--~d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~  109 (294)
                      .+.+-|.+ +...+.+..-...+..-+|+| ++..++-. -  .. ..+.++++.+++......    ..+.-..-+|+|
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----~~g~~~~P~fsp  247 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----FNGNNGAPAFSP  247 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec----cCCccCCccCCC
Confidence            44444443 444555555556777788999 55544332 2  22 358899999887766654    444456678999


Q ss_pred             CCCceEEeeecCCcEEE--EeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEee-CCCe
Q 022590          110 SDIYRIASCGMDNTVKI--WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS-VDNE  186 (294)
Q Consensus       110 ~~~~~l~~~~~dg~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~d~~  186 (294)
                      ++..++++...||...+  .|+.....                    . .+....+... -.+...+|+.++-.+ ..|.
T Consensus       248 DG~~l~f~~~rdg~~~iy~~dl~~~~~--------------------~-~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~  305 (425)
T COG0823         248 DGSKLAFSSSRDGSPDIYLMDLDGKNL--------------------P-RLTNGFGINT-SPSWSPDGSKIVFTSDRGGR  305 (425)
T ss_pred             CCCEEEEEECCCCCccEEEEcCCCCcc--------------------e-ecccCCcccc-CccCCCCCCEEEEEeCCCCC
Confidence            55566666677776554  55554210                    0 0111111111 222333466665544 4444


Q ss_pred             --EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe--EEEEeccCCC
Q 022590          187 --IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK--IFVWELQSSP  249 (294)
Q Consensus       187 --i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~  249 (294)
                        |.++|.....          ...+......-..-.++|+++ .+++.+..+|.  |.+.|+.++.
T Consensus       306 p~I~~~~~~g~~----------~~riT~~~~~~~~p~~SpdG~-~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         306 PQIYLYDLEGSQ----------VTRLTFSGGGNSNPVWSPDGD-KIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             cceEEECCCCCc----------eeEeeccCCCCcCccCCCCCC-EEEEEeccCCceeeEEeccCCCC
Confidence              6666665543          122222222222567999996 33344433455  6666666654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.017  Score=46.15  Aligned_cols=236  Identities=14%  Similarity=0.058  Sum_probs=131.2

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR   99 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~   99 (294)
                      +++....++-.....+...+............-...-..++.++...+.++....+..|.+.|..+.........    .
T Consensus        40 ~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v----G  115 (381)
T COG3391          40 PDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV----G  115 (381)
T ss_pred             CccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee----c
Confidence            666434444333334555554422211111111133456778884455666666779999999888777776653    2


Q ss_pred             CceeEEEEecCCCceEEee-e--cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--
Q 022590          100 NEVLSVDFHPSDIYRIASC-G--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--  174 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~-~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  174 (294)
                      .....++++| ++..+.++ .  .++++.+.|..+...                       ......-..+ ..++++  
T Consensus       116 ~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~-----------------------~~~~~vG~~P-~~~a~~p~  170 (381)
T COG3391         116 LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV-----------------------TATIPVGNTP-TGVAVDPD  170 (381)
T ss_pred             cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE-----------------------EEEEecCCCc-ceEEECCC
Confidence            3678899999 55444444 4  367888888776321                       1111111122 444554  


Q ss_pred             cceEEEe-eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-CCeEEEEeccCCCcee
Q 022590          175 GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-EGKIFVWELQSSPPVL  252 (294)
Q Consensus       175 ~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~  252 (294)
                      ++.++.. ..++.|.+.|.+...... ....    ...........+.+.|++...+++.... ++.+...|..++....
T Consensus       171 g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~----~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         171 GNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG----SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             CCeEEEEecCCCeEEEEeCCCcceec-cccc----cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            6644444 478999999976554211 0000    0111123345688999996333332222 2688889988875322


Q ss_pred             eeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEecC
Q 022590          253 IARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAI  292 (294)
Q Consensus       253 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~  292 (294)
                      .....  ... ....+..+|+|+++.+.. ..+.+.+-|..
T Consensus       246 ~~~~~--~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         246 TDLPV--GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             ecccc--ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence            21111  111 456689999999888774 34667776654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.67  E-value=0.0041  Score=48.95  Aligned_cols=219  Identities=14%  Similarity=0.156  Sum_probs=94.0

Q ss_pred             CCceEEEEee-cCCeEEEEEcCCc----cccceecc---cC----cceEEEEeCCCCCceEEEee--C----CCcEEEEE
Q 022590           21 DGIPFLVAGG-INGIIRVIDVSNE----KLHKSFVG---HG----DSINEIRTQPLKPSLVVSAS--K----DESVRLWN   82 (294)
Q Consensus        21 ~~~~~l~~~~-~dg~i~iw~~~~~----~~~~~~~~---h~----~~v~~~~~~~~~~~~l~s~~--~----dg~i~vwd   82 (294)
                      +.+ +|+..+ ..+.|+|.|+.+.    +..+.+..   +.    ..-..+..-| +++.++|+-  .    -|-+.+.|
T Consensus        86 ~Rr-~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD  163 (461)
T PF05694_consen   86 ERR-YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLD  163 (461)
T ss_dssp             -S--EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-
T ss_pred             cCC-cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEc
Confidence            344 565555 7789999998743    23333321   11    1222333446 777887752  2    24577888


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      -++.+.........+...--+.+-|.| ..+.++|..... -+.+.  .                               
T Consensus       164 ~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~-P~~~~--~-------------------------------  208 (461)
T PF05694_consen  164 GETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGA-PSMFE--K-------------------------------  208 (461)
T ss_dssp             TTT--EEEE--SB-TT------EEEET-TTTEEEE-B----HHHHT--T-------------------------------
T ss_pred             CccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCC-hhhcc--c-------------------------------
Confidence            887777777664333344567888888 777777765321 11000  0                               


Q ss_pred             cCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC--CeeEEEEcccCCcceEEEE-cCCCe
Q 022590          163 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIG-NREGK  239 (294)
Q Consensus       163 ~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~-~~dg~  239 (294)
                               -|+..-+..+....++.+||+.+.+         .++.+.....  ....+.|..+....+=++| -..+.
T Consensus       209 ---------Gf~~~d~~~~~yG~~l~vWD~~~r~---------~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~  270 (461)
T PF05694_consen  209 ---------GFNPEDLEAGKYGHSLHVWDWSTRK---------LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSS  270 (461)
T ss_dssp             ------------TTTHHHH-S--EEEEEETTTTE---------EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EE
T ss_pred             ---------CCChhHhhcccccCeEEEEECCCCc---------EeeEEecCCCCCceEEEEecCCCCccceEEEEeccce
Confidence                     0001112223345789999999665         5666665542  2446777776543332222 23344


Q ss_pred             EEEEec-cCCCceee--eecccc---------------ccCCCeEEEEEccCCCEEEEec-cCCcEEEEecCCC
Q 022590          240 IFVWEL-QSSPPVLI--ARLSHA---------------QSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAIPT  294 (294)
Q Consensus       240 i~i~d~-~~~~~~~~--~~~~~~---------------~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~~~  294 (294)
                      |..|-- ..++....  ..+...               .-..-|+.+.+|.|.++|..++ .+|.|+.||+..+
T Consensus       271 i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  271 IWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             EEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence            444433 43332111  111100               0024589999999999998765 7899999999753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.59  E-value=0.00036  Score=36.40  Aligned_cols=34  Identities=12%  Similarity=0.158  Sum_probs=29.8

Q ss_pred             CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590           53 GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus        53 ~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      ...|.+++|+| ..++||.++.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence            45799999999 8899999999999999999 5543

>PHA03098 kelch-like protein; Provisional

Probab=97.59  E-value=0.014  Score=49.03  Aligned_cols=103  Identities=13%  Similarity=0.087  Sum_probs=51.1

Q ss_pred             CCceEEEEeecCC------eEEEEEcCCccccc--eecccCcceEEEEeCCCCCceEEEeeCC-----CcEEEEEcCCCc
Q 022590           21 DGIPFLVAGGING------IIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGI   87 (294)
Q Consensus        21 ~~~~~l~~~~~dg------~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~   87 (294)
                      ++. +++.|+.++      .+..||..+.+-..  .+.........+.+   ++.+++.||.+     ..+..||..+++
T Consensus       294 ~~~-lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        294 NNV-IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             CCE-EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            344 667776542      46778876654321  11111112222222   56777778765     346778877654


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecC------CcEEEEeccc
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKE  131 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~~wd~~~  131 (294)
                      -.. .... .+...-.+++..  ++.+++.||.+      ..+..||+.+
T Consensus       370 W~~-~~~l-p~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        370 WRE-EPPL-IFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             eee-CCCc-CcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCC
Confidence            322 1111 011111122222  56777777732      3577788765

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.0067  Score=48.59  Aligned_cols=142  Identities=11%  Similarity=0.106  Sum_probs=90.3

Q ss_pred             eEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCC------CceEEeeecCCcEEEEecccccccccccee
Q 022590           68 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD------IYRIASCGMDNTVKIWSMKEFWTYVEKSFT  141 (294)
Q Consensus        68 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  141 (294)
                      +|.++.....+.-.|++.|+.+.....   +.. |+-+.+.|+.      ...-+.|-.|..|.-||.|-....      
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~---~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~------  417 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKF---EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN------  417 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeec---cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc------
Confidence            455666667788889999999999883   433 7777777721      112234556888999999852110      


Q ss_pred             ecCCCCCCCCceeeeceEEeecC----CCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC
Q 022590          142 WTDLPSKFPTKYVQFPVFIASVH----SNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD  216 (294)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  216 (294)
                                     .+.....|    .....|.+-. ..++++|+.+|.||+||-- +.+        ....+++-..+
T Consensus       418 ---------------kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri-~~~--------AKTAlPgLG~~  473 (644)
T KOG2395|consen  418 ---------------KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRI-GRR--------AKTALPGLGDA  473 (644)
T ss_pred             ---------------eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhh-hhh--------hhhcccccCCc
Confidence                           01111111    1122233222 6799999999999999973 321        34456677788


Q ss_pred             eeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       217 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      |..+..+.+|+  +++ |..+..+.+.++.
T Consensus       474 I~hVdvtadGK--wil-~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  474 IKHVDVTADGK--WIL-ATCKTYLLLIDTL  500 (644)
T ss_pred             eeeEEeeccCc--EEE-EecccEEEEEEEe
Confidence            99999999995  444 3346677777764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.55  E-value=0.035  Score=46.03  Aligned_cols=214  Identities=14%  Similarity=0.084  Sum_probs=103.5

Q ss_pred             cCCeEEEEEcCCccccceecccCcc--------------------e-EEEEeCCCCCceEEEeeCCC-------------
Q 022590           31 INGIIRVIDVSNEKLHKSFVGHGDS--------------------I-NEIRTQPLKPSLVVSASKDE-------------   76 (294)
Q Consensus        31 ~dg~i~iw~~~~~~~~~~~~~h~~~--------------------v-~~~~~~~~~~~~l~s~~~dg-------------   76 (294)
                      .+|.+..+|..+++.+-.++.....                    | ...++.+ .+..++.++.++             
T Consensus       173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~  251 (488)
T cd00216         173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGD  251 (488)
T ss_pred             CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCC
Confidence            3678999999999887766432110                    1 1233343 345677776554             


Q ss_pred             -----cEEEEEcCCCceEEEeeccCCCCC----ceeEEEEe---cCCC---ceEEeeecCCcEEEEecccccccccccee
Q 022590           77 -----SVRLWNVQTGICILIFAGAGGHRN----EVLSVDFH---PSDI---YRIASCGMDNTVKIWSMKEFWTYVEKSFT  141 (294)
Q Consensus        77 -----~i~vwd~~~~~~~~~~~~~~~~~~----~v~~l~~~---~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~~~  141 (294)
                           .|.-+|..+|+..-.++.. .|..    ......+.   ..++   ..++.++.+|.+...|.++++........
T Consensus       252 ~~~~~~l~Ald~~tG~~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~  330 (488)
T cd00216         252 NLYTDSIVALDADTGKVKWFYQTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV  330 (488)
T ss_pred             CCceeeEEEEcCCCCCEEEEeeCC-CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee
Confidence                 7888999999998887531 1210    00001111   0122   25778888999999999986544333221


Q ss_pred             ecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEE
Q 022590          142 WTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK  221 (294)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  221 (294)
                      ......  ..    ..+..-..+ .. ..+......+.....+|.+.-.|..+++................ ..+...-.
T Consensus       331 ~~~~~~--~~----~~vyv~~~~-~~-~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~-g~~~~~~~  401 (488)
T cd00216         331 EQPMAY--DP----GLVYLGAFH-IP-LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNI-GFPHWGGS  401 (488)
T ss_pred             cccccc--CC----ceEEEcccc-cc-ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccccccc-CCcccCcc
Confidence            000000  00    000000000 00 00000000011122356677777776653221111000000000 00110001


Q ss_pred             EcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590          222 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS  257 (294)
Q Consensus       222 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  257 (294)
                      ....+  ..+++++.||.++.+|.++++.+....+.
T Consensus       402 ~~~~g--~~v~~g~~dG~l~ald~~tG~~lW~~~~~  435 (488)
T cd00216         402 LATAG--NLVFAGAADGYFRAFDATTGKELWKFRTP  435 (488)
T ss_pred             eEecC--CeEEEECCCCeEEEEECCCCceeeEEECC
Confidence            11122  47888899999999999999876666654

The alignment model contains an 8-bladed beta-propeller.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.52  E-value=0.00051  Score=35.82  Aligned_cols=31  Identities=16%  Similarity=0.074  Sum_probs=28.2

Q ss_pred             CCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ...|..++|+|...+||.++.||.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3569999999999999999999999999874

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.51  E-value=0.024  Score=43.11  Aligned_cols=163  Identities=11%  Similarity=0.146  Sum_probs=91.8

Q ss_pred             CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecC
Q 022590           65 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD  144 (294)
Q Consensus        65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  144 (294)
                      .++.|+.|+.+| +.+++...........    +...|..+...| +-+.|++-+ |+.+.++++...............
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~----~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL----KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEe----ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            467888999999 8899984333333333    344599999998 655555554 599999999984432211100000


Q ss_pred             CCCCCCCceeeeceEEeecCCCceeecc----eecceEEEeeCCCeEEEecCCCCCCCCCCCCc-eeeeeeecCCCCeeE
Q 022590          145 LPSKFPTKYVQFPVFIASVHSNYVDCNR----WLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA-DILQKYPVPECDIWF  219 (294)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~i~~  219 (294)
                      ..         ............+...+    ..+...++.....+|.+|.......     .. ....++..+ ..+..
T Consensus        79 ~~---------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~-----~f~~~~ke~~lp-~~~~~  143 (275)
T PF00780_consen   79 KS---------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRN-----SFSKLLKEISLP-DPPSS  143 (275)
T ss_pred             cc---------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcc-----cccceeEEEEcC-CCcEE
Confidence            00         00000000111122222    1234444445556999988876421     11 355666655 56778


Q ss_pred             EEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590          220 IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  254 (294)
Q Consensus       220 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  254 (294)
                      ++|..    +.++.|..++ ..+.|+.++......
T Consensus       144 i~~~~----~~i~v~~~~~-f~~idl~~~~~~~l~  173 (275)
T PF00780_consen  144 IAFLG----NKICVGTSKG-FYLIDLNTGSPSELL  173 (275)
T ss_pred             EEEeC----CEEEEEeCCc-eEEEecCCCCceEEe
Confidence            88883    3577776544 888999977654443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.44  E-value=0.038  Score=43.75  Aligned_cols=60  Identities=12%  Similarity=0.192  Sum_probs=36.7

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-c-------c---------CcceEEEEeCCCCCceEEE
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-G-------H---------GDSINEIRTQPLKPSLVVS   71 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~-------h---------~~~v~~~~~~~~~~~~l~s   71 (294)
                      ..+....|+  |+|+ .+|... ++.|.+++..+++..+.-. +       -         -+.-..+-||| ++++|+.
T Consensus        43 ~~~~~~~~s--P~g~-~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~  117 (353)
T PF00930_consen   43 PKLQDAKWS--PDGK-YIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAF  117 (353)
T ss_dssp             TTBSEEEE---SSST-EEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T-TSSEEEE
T ss_pred             cccccceee--cCCC-eeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECC-CCCEEEE
Confidence            456777887  9998 666664 5789999987764432211 1       0         11235688999 7776665


Q ss_pred             ee
Q 022590           72 AS   73 (294)
Q Consensus        72 ~~   73 (294)
                      ..
T Consensus       118 ~~  119 (353)
T PF00930_consen  118 LR  119 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=97.36  E-value=0.0019  Score=50.66  Aligned_cols=245  Identities=15%  Similarity=0.144  Sum_probs=132.9

Q ss_pred             EEEeecCCCceEEEEeecCCeEEEEEcCCcc----ccceecccCcce-EE----EEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590           14 VSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSI-NE----IRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~h~~~v-~~----~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      +.|+-.|.|++.++.|..||.+.+...+-..    +-..+.-...++ ..    ..-+| ..++..+.+.+....+++..
T Consensus       118 v~wa~~~~gqp~~alglsngqv~v~qp~~s~t~p~pg~~Fp~g~~p~aLd~qgr~leh~-~~~lalA~~~~~qf~~~~~t  196 (733)
T COG4590         118 VLWAQTPPGQPWFALGLSNGQVAVVQPQLSHTMPTPGREFPPGLEPLALDEQGRLLEHP-LQQLALALTAEAQFATYDNT  196 (733)
T ss_pred             cccccCCCCCceEEEeccCCeEEEEeccccccCCCCCccCCCCCCccccCcccCcccch-HHHhhhccchhhHHHHhhhh
Confidence            4566667888899999999999998743111    111111000000 00    00111 11233334444444444432


Q ss_pred             C------------CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCc
Q 022590           85 T------------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  152 (294)
Q Consensus        85 ~------------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (294)
                      .            ++.+..+.   .....+..+-..| +++.+..-+. ..+.++++.+.....++..+..+.       
T Consensus       197 ~~~~~L~g~~t~q~e~i~~L~---~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg-------  264 (733)
T COG4590         197 QQIQILRGDRTTQQEIIRLLS---VPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPG-------  264 (733)
T ss_pred             hhhhhhhcccCchhhhhhhcC---CCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCC-------
Confidence            1            12222222   3556788888999 7777766554 688888887632222111110000       


Q ss_pred             eeeeceEEeecCCCcee-ecc-ee-cceEEEeeCCCeEEEe-cCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCc
Q 022590          153 YVQFPVFIASVHSNYVD-CNR-WL-GDFILSKSVDNEIVLW-EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY  228 (294)
Q Consensus       153 ~~~~~~~~~~~~~~~i~-~~~-~~-~~~l~~~~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (294)
                                .....|+ .+. .. +..+.++..||.|.-| |.+.....    +...++.++....++..  ..|+...
T Consensus       265 ----------~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~p----~l~h~R~f~l~pa~~~~--l~pe~~r  328 (733)
T COG4590         265 ----------DSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQP----HLNHIRNFKLAPAEVQF--LLPETNR  328 (733)
T ss_pred             ----------chHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCCC----cceeeeccccCccccee--ecccccc
Confidence                      0001111 111 11 5678888889888665 66654321    22234444443333433  3444444


Q ss_pred             ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +-+++-+..|.+.++.....+........     ..+.-+++||.+.+|++- ..|.++++.+++
T Consensus       329 kgF~~l~~~G~L~~f~st~~~~lL~~~~~-----~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~N  387 (733)
T COG4590         329 KGFYSLYRNGTLQSFYSTSEKLLLFERAY-----QAPQLVAMSPNQAYLLSE-DQGKIRLAQLEN  387 (733)
T ss_pred             ceEEEEcCCCceeeeecccCcceehhhhh-----cCcceeeeCcccchheee-cCCceEEEEecC
Confidence            67888889999999887776654444333     245678999999999876 456788887764

>PHA03098 kelch-like protein; Provisional

Probab=97.36  E-value=0.04  Score=46.41  Aligned_cols=189  Identities=11%  Similarity=0.058  Sum_probs=87.8

Q ss_pred             CCceEEEeeCCC------cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC-----cEEEEeccccc
Q 022590           65 KPSLVVSASKDE------SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFW  133 (294)
Q Consensus        65 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~  133 (294)
                      ++.+++.|+.++      .+..||..+.+-.. +.......... +++..  ++.+++.||.++     .+..||..+..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~-~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNP-GVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccc-eEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            456777776543      46678877665432 22111111112 22222  667788887653     35566665421


Q ss_pred             cccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCC------CeEEEecCCCCCCCCCCCCceee
Q 022590          134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD------NEIVLWEPKMKEQSPGEGTADIL  207 (294)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~  207 (294)
                              |...+.             +.............+...+.|+.+      ..+..||+.+.+-.       .+
T Consensus       370 --------W~~~~~-------------lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~-------~~  421 (534)
T PHA03098        370 --------WREEPP-------------LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS-------KG  421 (534)
T ss_pred             --------eeeCCC-------------cCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee-------ec
Confidence                    111000             000001111122336666666632      45788898765321       11


Q ss_pred             eeeecCCCCeeEEEEcccCCcceEEEEcCC--------CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590          208 QKYPVPECDIWFIKFSCDFHYNAAAIGNRE--------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS  279 (294)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  279 (294)
                      ...+......  .+...++  .+.+.|+.+        ..+.+||..+.+..........  ......+.  .+++.++.
T Consensus       422 ~~~p~~r~~~--~~~~~~~--~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~--~~~~iyv~  493 (534)
T PHA03098        422 SPLPISHYGG--CAIYHDG--KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCI--FNNKIYVV  493 (534)
T ss_pred             CCCCccccCc--eEEEECC--EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEE--ECCEEEEE
Confidence            1111111111  1222333  355555532        2388899888764433332211  11112222  26777777


Q ss_pred             eccC-----CcEEEEecCC
Q 022590          280 CCED-----GAIWRWDAIP  293 (294)
Q Consensus       280 ~~~d-----g~i~vw~~~~  293 (294)
                      |+.+     ..+.+||.++
T Consensus       494 GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        494 GGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             cCCcCCcccceeEEEeCCC
Confidence            7754     4678887654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.35  E-value=0.048  Score=46.00  Aligned_cols=188  Identities=15%  Similarity=0.135  Sum_probs=101.9

Q ss_pred             CCceEEEeeCCC------cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC------CcEEEEecccc
Q 022590           65 KPSLVVSASKDE------SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEF  132 (294)
Q Consensus        65 ~~~~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~~wd~~~~  132 (294)
                      .+.+++.|+.++      .+..+|..+++.......  .....-.+++..  ++.++++||.|      .++..||.+..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m--~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM--PSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC--CcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence            456778888774      577888887754433221  133344566665  56889999998      34566776663


Q ss_pred             ccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCe-----EEEecCCCCCCCCCCCCceee
Q 022590          133 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNE-----IVLWEPKMKEQSPGEGTADIL  207 (294)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~~~~~~~  207 (294)
                      .        |.             ....+.............|.+.++|+.||.     +-.||..+.+-.       ..
T Consensus       360 ~--------W~-------------~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~-------~v  411 (571)
T KOG4441|consen  360 Q--------WT-------------PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT-------PV  411 (571)
T ss_pred             c--------ee-------------ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccc-------cc
Confidence            2        11             111112222222233334778888888864     777888766421       11


Q ss_pred             eeeecCCCCeeEE-EEcccCCcceEEEEcCC------CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe
Q 022590          208 QKYPVPECDIWFI-KFSCDFHYNAAAIGNRE------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC  280 (294)
Q Consensus       208 ~~~~~~~~~i~~~-~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  280 (294)
                      .....   ..... ...-++  .+.++|+.+      ..+..||..+++.........  .+.... ++ .-++.+.+.|
T Consensus       412 a~m~~---~r~~~gv~~~~g--~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~~~g-~a-~~~~~iYvvG  482 (571)
T KOG4441|consen  412 APMLT---RRSGHGVAVLGG--KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT--RRSGFG-VA-VLNGKIYVVG  482 (571)
T ss_pred             CCCCc---ceeeeEEEEECC--EEEEEcCcCCCccccceEEEEcCCCCceeecCCccc--ccccce-EE-EECCEEEEEC
Confidence            11111   11111 222233  456666643      457788988887555544441  112122 22 2366788888


Q ss_pred             ccCCc-----EEEEecCC
Q 022590          281 CEDGA-----IWRWDAIP  293 (294)
Q Consensus       281 ~~dg~-----i~vw~~~~  293 (294)
                      |.|+.     |..||.++
T Consensus       483 G~~~~~~~~~VE~ydp~~  500 (571)
T KOG4441|consen  483 GFDGTSALSSVERYDPET  500 (571)
T ss_pred             CccCCCccceEEEEcCCC
Confidence            87773     55566543

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.32  E-value=0.0017  Score=56.16  Aligned_cols=111  Identities=14%  Similarity=0.151  Sum_probs=76.4

Q ss_pred             eeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          168 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       168 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      +.+.+.-+..++.|+..|.+...|++..-.        ....-.....+|++++|+.+|  ..++.|-.+|.|.+||...
T Consensus        92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~--------~~~~ne~v~~~Vtsvafn~dg--~~l~~G~~~G~V~v~D~~~  161 (1206)
T KOG2079|consen   92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLG--------PLHQNERVQGPVTSVAFNQDG--SLLLAGLGDGHVTVWDMHR  161 (1206)
T ss_pred             eeeeeeeeeeEEEEcCchhhhhhhhhcccc--------hhhcCCccCCcceeeEecCCC--ceeccccCCCcEEEEEccC
Confidence            334444466888999999999999875311        122223345789999999999  6899999999999999999


Q ss_pred             CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          248 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ++...........+ ..|..+.+..++..++++...|.  +|++
T Consensus       162 ~k~l~~i~e~~ap~-t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  162 AKILKVITEHGAPV-TGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             CcceeeeeecCCcc-ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            87544444332222 33444555566668888888886  5654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.30  E-value=0.056  Score=43.68  Aligned_cols=118  Identities=14%  Similarity=0.101  Sum_probs=69.8

Q ss_pred             cCceeEEEEEeecCCCceEEEEeec--C-CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE--
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGI--N-GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW--   81 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~--d-g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw--   81 (294)
                      ....+..-+|+  |+++.+....-.  . ..+.++++++++....+. ..+.-..-+|+|++..++++...||...||  
T Consensus       191 ~~~~~~~p~ws--~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         191 SGSLILTPAWS--PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             cCcceeccccC--cCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence            34455666777  788733333222  2 459999999887655554 344456678999555556666777775554  


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      |+..+.. ..+..   -.+.-..=.|+|++..++++.+..|.-.+|-...
T Consensus       268 dl~~~~~-~~Lt~---~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~  313 (425)
T COG0823         268 DLDGKNL-PRLTN---GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL  313 (425)
T ss_pred             cCCCCcc-eeccc---CCccccCccCCCCCCEEEEEeCCCCCcceEEECC
Confidence            6655553 33442   2222235678995555556666677666665543

>PHA02790 Kelch-like protein; Provisional

Probab=97.27  E-value=0.077  Score=43.93  Aligned_cols=186  Identities=11%  Similarity=-0.022  Sum_probs=88.2

Q ss_pred             CCceEEEeeCCC-----cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC--cEEEEeccccccccc
Q 022590           65 KPSLVVSASKDE-----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKEFWTYVE  137 (294)
Q Consensus        65 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~  137 (294)
                      ++.+++.|+.++     ++..||..+++.... ..+...... .+++. - ++.+.+.||.++  .+..||..+..    
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~-~~m~~~r~~-~~~v~-~-~~~iYviGG~~~~~sve~ydp~~n~----  342 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPI-PPMNSPRLY-ASGVP-A-NNKLYVVGGLPNPTSVERWFHGDAA----  342 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEEC-CCCCchhhc-ceEEE-E-CCEEEEECCcCCCCceEEEECCCCe----
Confidence            456777777643     466788776553322 211111111 12222 2 677788887643  46666654321    


Q ss_pred             cceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCC---eEEEecCCCCCCCCCCCCceeeeeeecCC
Q 022590          138 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYPVPE  214 (294)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  214 (294)
                          |...+             .+.........+..++.+.+.|+.++   .+..||+++..-       ......+.+.
T Consensus       343 ----W~~~~-------------~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W-------~~~~~m~~~r  398 (480)
T PHA02790        343 ----WVNMP-------------SLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQW-------QFGPSTYYPH  398 (480)
T ss_pred             ----EEECC-------------CCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEE-------EeCCCCCCcc
Confidence                11100             11111111222333466777777543   467788775431       1111111111


Q ss_pred             CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC-----CcEEEE
Q 022590          215 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRW  289 (294)
Q Consensus       215 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~vw  289 (294)
                      ...  .+...++  .+.+.|   |.+.+||.++++......+..  .......+  .-+++..+.||.+     ..+..|
T Consensus       399 ~~~--~~~~~~~--~IYv~G---G~~e~ydp~~~~W~~~~~m~~--~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Y  467 (480)
T PHA02790        399 YKS--CALVFGR--RLFLVG---RNAEFYCESSNTWTLIDDPIY--PRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVY  467 (480)
T ss_pred             ccc--eEEEECC--EEEEEC---CceEEecCCCCcEeEcCCCCC--CccccEEE--EECCEEEEECCcCCCcccceEEEE
Confidence            111  1223344  345555   457889998876544443331  11222222  2367788888754     357788


Q ss_pred             ecCC
Q 022590          290 DAIP  293 (294)
Q Consensus       290 ~~~~  293 (294)
                      |.++
T Consensus       468 d~~~  471 (480)
T PHA02790        468 NNRT  471 (480)
T ss_pred             ECCC
Confidence            7654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.26  E-value=0.054  Score=41.62  Aligned_cols=204  Identities=13%  Similarity=0.058  Sum_probs=102.0

Q ss_pred             CCCceEEEEee--cCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC-CCceEEEeec-c
Q 022590           20 VDGIPFLVAGG--INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAG-A   95 (294)
Q Consensus        20 ~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~-~   95 (294)
                      .||+ +++...  ---.|.|-|+..++.+.++... +   |.-.-|..++-+.+-+.||.+.-..+. .|+....... +
T Consensus       104 ~dgk-~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F  178 (342)
T PF06433_consen  104 ADGK-FLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF  178 (342)
T ss_dssp             TTSS-EEEEEEESSSEEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES
T ss_pred             cCCc-EEEEEccCCCCeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecccc
Confidence            5665 444432  2345677777777766665422 1   111223234568888999999988887 4554432211 1


Q ss_pred             CCCCCcee-EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee
Q 022590           96 GGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL  174 (294)
Q Consensus        96 ~~~~~~v~-~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (294)
                      ..-..++. .=++.. .+..++--+.+|.|+--|+.............-.....           ....-++.-.-++++
T Consensus       179 ~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~-----------~~~WrPGG~Q~~A~~  246 (342)
T PF06433_consen  179 DPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEK-----------ADGWRPGGWQLIAYH  246 (342)
T ss_dssp             STTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHH-----------HTTEEE-SSS-EEEE
T ss_pred             CCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCcccc-----------ccCcCCcceeeeeec
Confidence            12222222 333443 34445556788999988887743222111110000000           000011111122222


Q ss_pred             --cceEEEeeC--------CC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          175 --GDFILSKSV--------DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       175 --~~~l~~~~~--------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                        .+.|++.-.        |+  .|-++|+.+.+         .+..++.. .++.++..+.+.+..+++....++.+.+
T Consensus       247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k---------rv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v  316 (342)
T PF06433_consen  247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK---------RVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDV  316 (342)
T ss_dssp             TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE---------EEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEE
T ss_pred             cccCeEEEEecCCCCCCccCCceEEEEEECCCCe---------EEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEE
Confidence              223322211        22  36667777655         45555542 3577899999987544455567899999


Q ss_pred             EeccCCCc
Q 022590          243 WELQSSPP  250 (294)
Q Consensus       243 ~d~~~~~~  250 (294)
                      ||..+++.
T Consensus       317 ~D~~tGk~  324 (342)
T PF06433_consen  317 YDAATGKL  324 (342)
T ss_dssp             EETTT--E
T ss_pred             EeCcCCcE
Confidence            99999863

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.08  Score=42.39  Aligned_cols=194  Identities=14%  Similarity=0.057  Sum_probs=116.4

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC---CCcEEEEEcCCCceEEEeeccC
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQTGICILIFAGAG   96 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~   96 (294)
                      +.+.+..+....++.|.+.|..+.+......--. ....++++| ++..+..+..   ++++.+.|..+++.+.....  
T Consensus        83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v--  158 (381)
T COG3391          83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPV--  158 (381)
T ss_pred             CCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEec--
Confidence            6676466666667899999977776666554322 567899999 5555554443   78999999999988887542  


Q ss_pred             CCCCceeEEEEecCCCc-eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC-Cceeeccee
Q 022590           97 GHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL  174 (294)
Q Consensus        97 ~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~  174 (294)
                       -..+ ..+++.| ++. .+++-..++.|.+.|........ .                 .......... .....+..+
T Consensus       159 -G~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~-~-----------------~~~~~~~~~~~P~~i~v~~~  217 (381)
T COG3391         159 -GNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVR-G-----------------SVGSLVGVGTGPAGIAVDPD  217 (381)
T ss_pred             -CCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceec-c-----------------ccccccccCCCCceEEECCC
Confidence             2233 8999999 655 45555578999999976621110 0                 0000001111 112222333


Q ss_pred             cceEEEeeCC---CeEEEecCCCCCCCCCCCCceeeee-eecCCCCeeEEEEcccCCcceEEEE-cCCCeEEEEeccCCC
Q 022590          175 GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWELQSSP  249 (294)
Q Consensus       175 ~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~  249 (294)
                      ++.+.+....   +.+...|..++..         ... ..........+...|+++  .+.+. ...+.+.+.|..+..
T Consensus       218 g~~~yV~~~~~~~~~v~~id~~~~~v---------~~~~~~~~~~~~~~v~~~p~g~--~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         218 GNRVYVANDGSGSNNVLKIDTATGNV---------TATDLPVGSGAPRGVAVDPAGK--AAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             CCEEEEEeccCCCceEEEEeCCCceE---------EEeccccccCCCCceeECCCCC--EEEEEecCCCeEEEEeCCCCc
Confidence            5544444333   5888888876542         111 111111345678999995  44444 445889999988765

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.18  E-value=0.054  Score=40.11  Aligned_cols=195  Identities=9%  Similarity=-0.004  Sum_probs=108.4

Q ss_pred             ccceecccCcc-eEEEEeCCCCCceEEEeeCCC--cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC
Q 022590           45 LHKSFVGHGDS-INEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD  121 (294)
Q Consensus        45 ~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d  121 (294)
                      .+.++...... ...+.|.. ++.++-+.+.-|  .|+.+|+.+++.......  ...----.++..  ++.+..-.-.+
T Consensus        35 vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l--~~~~FgEGit~~--~d~l~qLTWk~  109 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPL--PPRYFGEGITIL--GDKLYQLTWKE  109 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE---TTT--EEEEEEE--TTEEEEEESSS
T ss_pred             EEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC--CccccceeEEEE--CCEEEEEEecC
Confidence            34455422233 45677855 678888887766  689999999998776653  122223445555  44555556678


Q ss_pred             CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCC
Q 022590          122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGE  201 (294)
Q Consensus       122 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  201 (294)
                      +...+||..+.+.                       +..+. .+..=..++.+++.|+.+.....|+++|..+.+.    
T Consensus       110 ~~~f~yd~~tl~~-----------------------~~~~~-y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~----  161 (264)
T PF05096_consen  110 GTGFVYDPNTLKK-----------------------IGTFP-YPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKE----  161 (264)
T ss_dssp             SEEEEEETTTTEE-----------------------EEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SE----
T ss_pred             CeEEEEccccceE-----------------------EEEEe-cCCcceEEEcCCCEEEEECCccceEEECCcccce----
Confidence            9999999987432                       22221 2234455566788888888888999999886542    


Q ss_pred             CCceeeeeeecC-----CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc-----------ccccCCCe
Q 022590          202 GTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-----------HAQSKSPI  265 (294)
Q Consensus       202 ~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~~~~~v  265 (294)
                           ...+...     -..++-+.+. +|  .+.|---....|...|..+++......+.           ......-.
T Consensus       162 -----~~~i~V~~~g~pv~~LNELE~i-~G--~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL  233 (264)
T PF05096_consen  162 -----VRTIQVTDNGRPVSNLNELEYI-NG--KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL  233 (264)
T ss_dssp             -----EEEEE-EETTEE---EEEEEEE-TT--EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred             -----EEEEEEEECCEECCCcEeEEEE-cC--EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence                 2222211     1234555554 33  34455555666777777777643333222           00113568


Q ss_pred             EEEEEccCCCEE-EEe
Q 022590          266 RQTAMSYDGSTI-LSC  280 (294)
Q Consensus       266 ~~~~~s~~~~~l-~s~  280 (294)
                      +.+|+.|..+.| +||
T Consensus       234 NGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  234 NGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EeEeEeCCCCEEEEEe
Confidence            999999876554 555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.18  E-value=0.12  Score=43.86  Aligned_cols=154  Identities=12%  Similarity=0.034  Sum_probs=77.9

Q ss_pred             eeEEEEEeecCCCceEEEEee------cCC--eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC------
Q 022590           10 SFYTVSWACNVDGIPFLVAGG------ING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD------   75 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~------~dg--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d------   75 (294)
                      .+...+.+  |+|+ .++...      .|+  .|.+++. .+.. ..+.. ....+.-.|+| ++..+++....      
T Consensus       351 ~vsspaiS--pdG~-~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v  423 (591)
T PRK13616        351 NITSAALS--RSGR-QVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRV  423 (591)
T ss_pred             CcccceEC--CCCC-EEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEE
Confidence            45566665  8998 554443      243  4555554 2222 33321 22478889999 76666665432      


Q ss_pred             ------CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCC
Q 022590           76 ------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF  149 (294)
Q Consensus        76 ------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  149 (294)
                            +.+.+.++..++...      .....|..+.|+| ++..++... +|.|.+=-+......              
T Consensus       424 ~~~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G--------------  481 (591)
T PRK13616        424 IRDPATGQLARTPVDASAVAS------RVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDG--------------  481 (591)
T ss_pred             eccCCCceEEEEeccCchhhh------ccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCC--------------
Confidence                  222222333222211      1356799999999 777666655 466666333221000              


Q ss_pred             CCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCC
Q 022590          150 PTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPK  193 (294)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~  193 (294)
                       ......+......-...+..+.|. +..|+++..++.-.+|.+.
T Consensus       482 -~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~  525 (591)
T PRK13616        482 -QYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN  525 (591)
T ss_pred             -ceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence             000111222222233345778886 4446666665555555543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.012  Score=47.25  Aligned_cols=141  Identities=13%  Similarity=0.143  Sum_probs=90.1

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCC------CceEEEeeCCCcEEEEEcCCCce--EEEee--c
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK------PSLVVSASKDESVRLWNVQTGIC--ILIFA--G   94 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~l~s~~~dg~i~vwd~~~~~~--~~~~~--~   94 (294)
                      +|.++.....++-.|++.|+.+..++.|.. |+-+.+.|+.      ...-+.|-.|..|.-||++-...  +...+  .
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq  426 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ  426 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence            455566666788889999999999987766 7777777731      11234466778899999874322  11111  1


Q ss_pred             cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee
Q 022590           95 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL  174 (294)
Q Consensus        95 ~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (294)
                      + .-.....|.+-.  +..++++|+.+|.|++||--.                       ......+.+-..+|..+...
T Consensus       427 y-~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~-----------------------~~AKTAlPgLG~~I~hVdvt  480 (644)
T KOG2395|consen  427 Y-STKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIG-----------------------RRAKTALPGLGDAIKHVDVT  480 (644)
T ss_pred             c-ccccccceeeec--CCceEEEeecCCcEEeehhhh-----------------------hhhhhcccccCCceeeEEee
Confidence            0 122344555554  455699999999999999743                       23344556666777766554


Q ss_pred             --cceEEEeeCCCeEEEecCC
Q 022590          175 --GDFILSKSVDNEIVLWEPK  193 (294)
Q Consensus       175 --~~~l~~~~~d~~i~iwd~~  193 (294)
                        |.+++.. .+..+.+-++.
T Consensus       481 adGKwil~T-c~tyLlLi~t~  500 (644)
T KOG2395|consen  481 ADGKWILAT-CKTYLLLIDTL  500 (644)
T ss_pred             ccCcEEEEe-cccEEEEEEEe
Confidence              7776654 45666666654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.15  E-value=0.033  Score=41.27  Aligned_cols=54  Identities=26%  Similarity=0.314  Sum_probs=40.6

Q ss_pred             ecCCCceEEEEeecC-----CeEEEEEcCCc-cccceecccCcceEEEEeCCCCCceEEEee
Q 022590           18 CNVDGIPFLVAGGIN-----GIIRVIDVSNE-KLHKSFVGHGDSINEIRTQPLKPSLVVSAS   73 (294)
Q Consensus        18 ~~~~~~~~l~~~~~d-----g~i~iw~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~   73 (294)
                      |||||. +|.+.-.|     |.|-|||...+ +.+..+..|.-.-..+.|.+ |++.++.+.
T Consensus       121 fs~dG~-~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~-DGrtlvvan  180 (366)
T COG3490         121 FSPDGR-LLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA-DGRTLVVAN  180 (366)
T ss_pred             cCCCCc-EEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec-CCcEEEEeC
Confidence            469998 66665443     78999998754 45667788887888899999 888777653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=97.14  E-value=0.071  Score=45.40  Aligned_cols=174  Identities=7%  Similarity=0.070  Sum_probs=94.5

Q ss_pred             CceEEeeecCCcEEEEecccccccccc--ceeecCCCCCCCCceeeeceEEeecCCCceeeccee----cceEEEeeCCC
Q 022590          112 IYRIASCGMDNTVKIWSMKEFWTYVEK--SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDN  185 (294)
Q Consensus       112 ~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~  185 (294)
                      .++++++. .+.|.||+++........  .......+........  ...... .+..|+-+...    .+.|+.+..||
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~--~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG  124 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDR--LISTWP-FPHTINFIKVGDLGGEEVLLLCTDDG  124 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccc--cccCCC-CCceeeEEEecccCCeeEEEEEecCC
Confidence            44555544 689999998874432211  1111111111111000  000111 22334444332    66899999999


Q ss_pred             eEEEecCCCCC----CC-------CCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590          186 EIVLWEPKMKE----QS-------PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  254 (294)
Q Consensus       186 ~i~iwd~~~~~----~~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  254 (294)
                      .|.+|.++.--    ..       .......+...+.. ....+++++......+++|+++....|.||-..........
T Consensus       125 ~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~  203 (717)
T PF08728_consen  125 DVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYH  203 (717)
T ss_pred             eEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccc
Confidence            99999663210    00       00001112222222 34688888883233379999999999999877653211111


Q ss_pred             eccccccCCCeEEEEEccCC---C---EEEEeccCCcEEEEec
Q 022590          255 RLSHAQSKSPIRQTAMSYDG---S---TILSCCEDGAIWRWDA  291 (294)
Q Consensus       255 ~~~~~~~~~~v~~~~~s~~~---~---~l~s~~~dg~i~vw~~  291 (294)
                      .- ...+...|.+++|-++.   .   .|++++-.|.+.+|++
T Consensus       204 ~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  204 VP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            11 11355678899997653   2   7888999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.14  E-value=0.075  Score=40.90  Aligned_cols=237  Identities=11%  Similarity=0.100  Sum_probs=127.2

Q ss_pred             ecCCCceEEEEee----------cCCeEEEEEcCCccccceecccCc-------ceEEEEeCCCCCceEEEe--eCCCcE
Q 022590           18 CNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGHGD-------SINEIRTQPLKPSLVVSA--SKDESV   78 (294)
Q Consensus        18 ~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~--~~dg~i   78 (294)
                      .+|+|+ .+++++          ..-.|.+||..+..+...+.-..+       ....++++. ++++++..  +--..|
T Consensus        43 ~spdgk-~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TPa~SV  120 (342)
T PF06433_consen   43 LSPDGK-TIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTPATSV  120 (342)
T ss_dssp             E-TTSS-EEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T-TSSEEEEEEESSSEEE
T ss_pred             ECCCCC-EEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEcc-CCcEEEEEccCCCCeE
Confidence            358998 666543          234699999999876654432211       123356777 66666654  334568


Q ss_pred             EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      .|-|+..++.+..+..    .+ +..+  .|..+.-|.+-|.||.+.-..+..........                  .
T Consensus       121 tVVDl~~~kvv~ei~~----PG-C~~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~------------------t  175 (342)
T PF06433_consen  121 TVVDLAAKKVVGEIDT----PG-CWLI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS------------------T  175 (342)
T ss_dssp             EEEETTTTEEEEEEEG----TS-EEEE--EEEETTEEEEEETTSCEEEEEETSTSSEEEEE------------------E
T ss_pred             EEEECCCCceeeeecC----CC-EEEE--EecCCCceEEEecCCceEEEEECCCCCEeEee------------------c
Confidence            8888888888887763    22 2222  34344568888899999999988532221110                  0


Q ss_pred             EEeecCCCcee-eccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec----------CCCCeeEEEEccc
Q 022590          159 FIASVHSNYVD-CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----------PECDIWFIKFSCD  225 (294)
Q Consensus       159 ~~~~~~~~~i~-~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~  225 (294)
                      ..+..-..++. .-.+.  +..++-.+.+|.|+--|+.....       .....+..          ..+...-+++++.
T Consensus       176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~-------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~  248 (342)
T PF06433_consen  176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA-------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAA  248 (342)
T ss_dssp             EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-------EEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred             cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-------cccCcccccCccccccCcCCcceeeeeeccc
Confidence            01111111111 11111  34444457788888877765531       11111111          1123444667665


Q ss_pred             CCcceEEE-Ec-----CCC--eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEe-ccCCcEEEEecCC
Q 022590          226 FHYNAAAI-GN-----REG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSC-CEDGAIWRWDAIP  293 (294)
Q Consensus       226 ~~~~~l~~-~~-----~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg~i~vw~~~~  293 (294)
                      .+..+++. .+     .++  .|.++|+.+.+  .+.+++..   .++.+|+.+.+.+ +|++. ..++.+.+||..+
T Consensus       249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k--rv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK--RVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             TTEEEEEEEE--TT-TTS-EEEEEEEETTTTE--EEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             cCeEEEEecCCCCCCccCCceEEEEEECCCCe--EEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence            53222221 11     122  35666666665  44444322   3588999998765 66554 5689999999865

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.10  E-value=0.11  Score=42.17  Aligned_cols=245  Identities=12%  Similarity=0.095  Sum_probs=114.4

Q ss_pred             EEeecCCCceEEEEe-ecCC----eEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCC----------CcE
Q 022590           15 SWACNVDGIPFLVAG-GING----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKD----------ESV   78 (294)
Q Consensus        15 ~~~~~~~~~~~l~~~-~~dg----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~d----------g~i   78 (294)
                      .+.++|+|+ ++|.+ +..|    .++++|+++++.+...-.. .....+.|.+ +++.| .+...+          ..|
T Consensus       128 ~~~~Spdg~-~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  128 GFSVSPDGK-RLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEETTTSS-EEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeECCCCC-EEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeC-CCCEEEEEEeCcccccccCCCCcEE
Confidence            677889999 55544 4545    4999999999765432111 1223499999 55544 444222          237


Q ss_pred             EEEEcCCCceE--EEeeccCCCCCc-eeEEEEecCCCceEEee-ecC---CcEEEEeccccccccccceeecCCCCCCCC
Q 022590           79 RLWNVQTGICI--LIFAGAGGHRNE-VLSVDFHPSDIYRIASC-GMD---NTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        79 ~vwd~~~~~~~--~~~~~~~~~~~~-v~~l~~~~~~~~~l~~~-~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      ..|.+.+...-  ..+..  ..... ...+..++ ++.+++.. ...   ..+.+.|+......                
T Consensus       205 ~~~~~gt~~~~d~lvfe~--~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~----------------  265 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEE--PDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSP----------------  265 (414)
T ss_dssp             EEEETTS-GGG-EEEEC---TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTS----------------
T ss_pred             EEEECCCChHhCeeEEee--cCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCC----------------
Confidence            77887766432  34442  12222 56788888 66665543 322   34677777652100                


Q ss_pred             ceeeeceEEeecCCCceeecceecceEEEee----CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWLGDFILSKS----VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH  227 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  227 (294)
                        ...+........+....+...++.+..-+    ..+.|.-.++.....      ......+..+...+.-..+...++
T Consensus       266 --~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~------~~~~~~l~~~~~~~~l~~~~~~~~  337 (414)
T PF02897_consen  266 --DAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSP------AEWWTVLIPEDEDVSLEDVSLFKD  337 (414)
T ss_dssp             --S-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSG------GGEEEEEE--SSSEEEEEEEEETT
T ss_pred             --cCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccc------ccceeEEcCCCCceeEEEEEEECC
Confidence              00111111212222223333344333323    235676677765531      011223333333333333444443


Q ss_pred             cceEEEEcCCC--eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE--ec--cCCcEEEEecCC
Q 022590          228 YNAAAIGNREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS--CC--EDGAIWRWDAIP  293 (294)
Q Consensus       228 ~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~--~dg~i~vw~~~~  293 (294)
                       .+++....++  .|+++++..+.......+.   ..+.|..+...++++.+..  .|  .=+.++.||+.+
T Consensus       338 -~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p---~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t  405 (414)
T PF02897_consen  338 -YLVLSYRENGSSRLRVYDLDDGKESREIPLP---EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT  405 (414)
T ss_dssp             -EEEEEEEETTEEEEEEEETT-TEEEEEEESS---SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred             -EEEEEEEECCccEEEEEECCCCcEEeeecCC---cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence             3455544444  4778888722222222222   1244566666666554332  22  224566666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.08  E-value=0.074  Score=39.73  Aligned_cols=169  Identities=9%  Similarity=0.043  Sum_probs=101.7

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc-CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~   86 (294)
                      ...|.++.|+  |+.+ .|++......-.|+=..+|+.++++.-. -...-.|.+.. ++++.++--.++.+.++.+...
T Consensus        85 ~~nvS~LTyn--p~~r-tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          85 TANVSSLTYN--PDTR-TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccceeeC--CCcc-eEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCC
Confidence            3458999998  8888 5666666666666666778888776421 12235577777 7777777778888888877655


Q ss_pred             ceEEEee-------ccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           87 ICILIFA-------GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        87 ~~~~~~~-------~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      .....+.       .....+...-.++|.| ..+.|..+-.-.-+.+|.+............             ..+..
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~-------------~~~~~  226 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHAS-------------LDPTA  226 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccc-------------cCccc
Confidence            3322221       1111255678999999 6666777777777888877752211111000             00111


Q ss_pred             EeecCCCceeeccee---cceEEEeeCCCeEEEecCCC
Q 022590          160 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKM  194 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~  194 (294)
                      .....-..|.++.|+   +.+++-+.+++.+.-.|...
T Consensus       227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence            111122345666776   56677777777777777654

>PHA02790 Kelch-like protein; Provisional

Probab=97.06  E-value=0.1  Score=43.20  Aligned_cols=100  Identities=10%  Similarity=0.002  Sum_probs=50.4

Q ss_pred             EEEEeecCC-----eEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCC--CcEEEEEcCCCceEEEeecc
Q 022590           25 FLVAGGING-----IIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD--ESVRLWNVQTGICILIFAGA   95 (294)
Q Consensus        25 ~l~~~~~dg-----~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~   95 (294)
                      ++++|+.++     .+..||..+++-.  ..+.........+.  - ++.+.+.|+.+  ..+..||..+++-.. ...+
T Consensus       274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l  349 (480)
T PHA02790        274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSL  349 (480)
T ss_pred             EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEE-CCCC
Confidence            667777543     4667887665422  22221111122222  2 56777888764  357778876554322 2211


Q ss_pred             CCCCCceeEEEEecCCCceEEeeecCC---cEEEEeccc
Q 022590           96 GGHRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKE  131 (294)
Q Consensus        96 ~~~~~~v~~l~~~~~~~~~l~~~~~dg---~i~~wd~~~  131 (294)
                      . ....-.+++..  ++.+.+.||.++   .+..||.++
T Consensus       350 ~-~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~  385 (480)
T PHA02790        350 L-KPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNH  385 (480)
T ss_pred             C-CCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCC
Confidence            1 11111122222  677788887654   355677665

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.03  E-value=0.094  Score=40.13  Aligned_cols=155  Identities=12%  Similarity=0.092  Sum_probs=72.1

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE-cCCC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN-VQTG   86 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd-~~~~   86 (294)
                      .+.+..+.-+  ++|+ +++++..-....-||.....-...-..-...|..|.|.| ++.+.+.+ ..|.|+.=+ ....
T Consensus       144 ~gs~~~~~r~--~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  144 SGSINDITRS--SDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             ---EEEEEE---TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             cceeEeEEEC--CCCc-EEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence            3556666554  8998 787776666666777432211111222457899999999 66665544 888888876 2222


Q ss_pred             ceEEE-eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           87 ICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        87 ~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      +.... +.....-.-.+..++|.+ ++...++|+ .|.+.+ ....++.-                    ........-+
T Consensus       219 ~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l~~-S~DgGktW--------------------~~~~~~~~~~  275 (302)
T PF14870_consen  219 ETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTLLV-STDGGKTW--------------------QKDRVGENVP  275 (302)
T ss_dssp             EEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-EEE-ESSTTSS---------------------EE-GGGTTSS
T ss_pred             cccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccEEE-eCCCCccc--------------------eECccccCCC
Confidence            22221 111111223489999998 667666655 454443 22221100                    0000111223


Q ss_pred             Cceeeccee-cceEEEeeCCCeEEEe
Q 022590          166 NYVDCNRWL-GDFILSKSVDNEIVLW  190 (294)
Q Consensus       166 ~~i~~~~~~-~~~l~~~~~d~~i~iw  190 (294)
                      ..+..+.|. ++.-++.+.+|.|.-|
T Consensus       276 ~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  276 SNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             S---EEEEEETTEEEEE-STTEEEEE
T ss_pred             CceEEEEEcCCCceEEECCCcEEEEe
Confidence            445666664 5566666778877655

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.86  E-value=0.0085  Score=30.29  Aligned_cols=33  Identities=12%  Similarity=0.202  Sum_probs=27.9

Q ss_pred             cceEEEEeCCCCC--ceEEEeeCCCcEEEEEcCCC
Q 022590           54 DSINEIRTQPLKP--SLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus        54 ~~v~~~~~~~~~~--~~l~s~~~dg~i~vwd~~~~   86 (294)
                      ++|.++.|+|..+  ++|+.+-.-|.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999998555  68999888999999999853

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.73  E-value=0.0085  Score=30.27  Aligned_cols=31  Identities=13%  Similarity=0.109  Sum_probs=25.9

Q ss_pred             CCeEEEEEccCC---CEEEEeccCCcEEEEecCC
Q 022590          263 SPIRQTAMSYDG---STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       263 ~~v~~~~~s~~~---~~l~s~~~dg~i~vw~~~~  293 (294)
                      +.|+++.|+|+.   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            358999999854   4888888889999999984

It contains a characteristic DLL sequence motif.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.71  E-value=0.12  Score=42.47  Aligned_cols=121  Identities=9%  Similarity=0.086  Sum_probs=70.0

Q ss_pred             Cceeeccee------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC-CCCeeEEEEcccCCcceEEEEcCCC
Q 022590          166 NYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       166 ~~i~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ..|..+.|.      -..+++.-....|.+|.+................++..+ .--...+.|+|..  .+|++-....
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~--~iL~VLT~~d  134 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK--AILTVLTARD  134 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC--ceEEEEecCc
Confidence            456677774      124444466788999998633221111111111111110 0112357899988  4666665555


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEec
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDA  291 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~  291 (294)
                      .-.++++..........+.   ..+.|.|.+|.+||+.|+.+- ..=.-++||-
T Consensus       135 vSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~  185 (671)
T PF15390_consen  135 VSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS  185 (671)
T ss_pred             eeEeeeeeeCCceEEEecc---CCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence            5567777766554555553   346799999999999887763 3334678874

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.55  E-value=0.053  Score=43.35  Aligned_cols=88  Identities=16%  Similarity=0.233  Sum_probs=61.9

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEE-EEeCCCCC----------------
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINE-IRTQPLKP----------------   66 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~-~~~~~~~~----------------   66 (294)
                      +.+....+.+++.+  |+++ +.|+...=|.|.++|+.++..++.+++-.++=.. +.......                
T Consensus       303 l~D~~R~~~~i~~s--P~~~-laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  303 LPDSKREGESICLS--PSGR-LAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             eccCCceEEEEEEC--CCCC-EEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            44666778888887  8888 8888777799999999999998888876543111 11111011                


Q ss_pred             c-eEEEeeCCCcEEEEEcCCCceEEEeec
Q 022590           67 S-LVVSASKDESVRLWNVQTGICILIFAG   94 (294)
Q Consensus        67 ~-~l~s~~~dg~i~vwd~~~~~~~~~~~~   94 (294)
                      . +++-+-.-|.|.||.+++|..+..+..
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            1 344566789999999999988877763

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.24  Score=37.20  Aligned_cols=146  Identities=12%  Similarity=0.149  Sum_probs=92.8

Q ss_pred             CCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecce
Q 022590           98 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDF  177 (294)
Q Consensus        98 ~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  177 (294)
                      -.+-+..+.++.   ++...+..+.-+++.|+.+.....                     ......-.+.-.++..+|++
T Consensus        85 ~~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~---------------------~~~~lnt~gyaygv~vsGn~  140 (370)
T COG5276          85 ARDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPT---------------------LIGFLNTDGYAYGVYVSGNY  140 (370)
T ss_pred             hhhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcc---------------------eeccccCCceEEEEEecCCE
Confidence            455677888863   566677777889999999842111                     11111112444566667999


Q ss_pred             EEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc-eeeeec
Q 022590          178 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-VLIARL  256 (294)
Q Consensus       178 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~  256 (294)
                      ..++..|.-+.+.|+.+...      ..+...+.........++.|-    ++...+..|+-+.+-|+..... .+....
T Consensus       141 aYVadlddgfLivdvsdpss------P~lagrya~~~~d~~~v~ISG----n~AYvA~~d~GL~ivDVSnp~sPvli~~~  210 (370)
T COG5276         141 AYVADLDDGFLIVDVSDPSS------PQLAGRYALPGGDTHDVAISG----NYAYVAWRDGGLTIVDVSNPHSPVLIGSY  210 (370)
T ss_pred             EEEeeccCcEEEEECCCCCC------ceeeeeeccCCCCceeEEEec----CeEEEEEeCCCeEEEEccCCCCCeEEEEE
Confidence            99999787888999987763      334455555555445566653    3566677888899999987643 222222


Q ss_pred             cccccCCCeEEEEEccCCCEEEEe
Q 022590          257 SHAQSKSPIRQTAMSYDGSTILSC  280 (294)
Q Consensus       257 ~~~~~~~~v~~~~~s~~~~~l~s~  280 (294)
                         .....+.++..+++.-+++..
T Consensus       211 ---n~g~g~~sv~vsdnr~y~vvy  231 (370)
T COG5276         211 ---NTGPGTYSVSVSDNRAYLVVY  231 (370)
T ss_pred             ---ecCCceEEEEecCCeeEEEEc
Confidence               222367888888876665554

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.46  E-value=0.47  Score=40.39  Aligned_cols=223  Identities=10%  Similarity=0.016  Sum_probs=104.8

Q ss_pred             CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee------CCCcEEEEEcCCCceEEEeeccCCCCCceeEE
Q 022590           32 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAGAGGHRNEVLSV  105 (294)
Q Consensus        32 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l  105 (294)
                      +|.+.-.+-..-.++.-..+....+...+++| +++.++...      .|+.-.+|-...+.....+.    .......-
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt----~g~~~t~P  402 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL----EGHSLTRP  402 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee----cCCCCCCc
Confidence            66665544322223322323334678999999 776665554      24444444332232223332    12237888


Q ss_pred             EEecCCCceEEeeecCCc-EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee
Q 022590          106 DFHPSDIYRIASCGMDNT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS  182 (294)
Q Consensus       106 ~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~  182 (294)
                      .|+| ++..+.+...... .++.+-............  .          .....   .....|..+.|+  |..++...
T Consensus       403 sWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd--~----------ge~~~---~~~g~Issl~wSpDG~RiA~i~  466 (591)
T PRK13616        403 SWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVD--A----------SAVAS---RVPGPISELQLSRDGVRAAMII  466 (591)
T ss_pred             eECC-CCCceEEEecCcceEEEeccCCCceEEEEecc--C----------chhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence            9999 7666666643212 222221110000000000  0          00000   234568888886  77666654


Q ss_pred             CCCeEEE---ecCCCCCCCCCCCCceeeeeeec-CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc
Q 022590          183 VDNEIVL---WEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH  258 (294)
Q Consensus       183 ~d~~i~i---wd~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  258 (294)
                       ++.|.+   -....+..     .......+.. ....+..+.|..++.   |+++..++.-.+|.+.-.-.... .+..
T Consensus       467 -~g~v~Va~Vvr~~~G~~-----~l~~~~~l~~~l~~~~~~l~W~~~~~---L~V~~~~~~~~v~~v~vDG~~~~-~~~~  536 (591)
T PRK13616        467 -GGKVYLAVVEQTEDGQY-----ALTNPREVGPGLGDTAVSLDWRTGDS---LVVGRSDPEHPVWYVNLDGSNSD-ALPS  536 (591)
T ss_pred             -CCEEEEEEEEeCCCCce-----eecccEEeecccCCccccceEecCCE---EEEEecCCCCceEEEecCCcccc-ccCC
Confidence             467766   33223321     1111122222 223357789999984   44555444444554432221111 1122


Q ss_pred             cccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590          259 AQSKSPIRQTAMSYDGSTILSCCEDGAIW  287 (294)
Q Consensus       259 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  287 (294)
                      .....++.+++-+++  .++....+|.+.
T Consensus       537 ~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        537 RNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             CCccCceEEEecCCc--eEEEEcCCceEE
Confidence            123467888888764  355556666443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.45  E-value=0.31  Score=38.24  Aligned_cols=73  Identities=19%  Similarity=0.092  Sum_probs=44.6

Q ss_pred             CCeeEEEEcccC-----CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590          215 CDIWFIKFSCDF-----HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW  287 (294)
Q Consensus       215 ~~i~~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  287 (294)
                      ..+..+.|....     ++.++++.-..+.|....++..........-.......+..+++.|||.+.++-+.+|.|+
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            445666665433     2346666666778888888755322211111223445799999999999999888899875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.42  E-value=0.51  Score=41.51  Aligned_cols=146  Identities=16%  Similarity=0.166  Sum_probs=98.5

Q ss_pred             CCCceEEEEeec----------CCeEEEEEcCCccccceeccc--CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590           20 VDGIPFLVAGGI----------NGIIRVIDVSNEKLHKSFVGH--GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus        20 ~~~~~~l~~~~~----------dg~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      .|...++++|..          .|.|.|+...+++.++....+  .+.|.++.--  +++++|+  -...|++|++.+++
T Consensus       784 ~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~  859 (1096)
T KOG1897|consen  784 DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTER  859 (1096)
T ss_pred             CCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccc
Confidence            452338888863          588999988775444444332  3556666543  4666654  44689999998886


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      .++.-.   .+..++..+...- .+..+++|..=+++.+...+..+.                    ......-..++.+
T Consensus       860 eLr~e~---~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg--------------------~f~evArD~~p~W  915 (1096)
T KOG1897|consen  860 ELRIEC---NISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEG--------------------NFEEVARDYNPNW  915 (1096)
T ss_pred             eehhhh---cccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCC--------------------ceEEeehhhCccc
Confidence            665544   5888899999887 888899998888888776665221                    1223344557778


Q ss_pred             eeeccee-cceEEEeeCCCeEEEecCC
Q 022590          168 VDCNRWL-GDFILSKSVDNEIVLWEPK  193 (294)
Q Consensus       168 i~~~~~~-~~~l~~~~~d~~i~iwd~~  193 (294)
                      ++++.+- ++.++.+..+|.+.+-...
T Consensus       916 mtaveil~~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  916 MTAVEILDDDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             eeeEEEecCceEEeecccccEEEEEec
Confidence            8877774 7777777788887776554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.091  Score=46.58  Aligned_cols=155  Identities=12%  Similarity=0.013  Sum_probs=88.9

Q ss_pred             CceeEEEEecCCCceEEee--ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---
Q 022590          100 NEVLSVDFHPSDIYRIASC--GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---  174 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---  174 (294)
                      -++..+...+ +....++.  +.+-.|..||++......-....    +        -..-...........++.|+   
T Consensus       101 ~pi~~~v~~~-D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~----p--------l~~s~ts~ek~vf~~~~~wnP~v  167 (1405)
T KOG3630|consen  101 IPIVIFVCFH-DATDSVVVSTSNGEAVYSFDLEEFSESRYETTV----P--------LKNSATSFEKPVFQLKNVWNPLV  167 (1405)
T ss_pred             ccceEEEecc-CCceEEEEEecCCceEEEEehHhhhhhhhhhcc----c--------cccccchhccccccccccccCCc
Confidence            3455555566 54443333  33447899999984332211000    0        00000111122344566676   


Q ss_pred             cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590          175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  254 (294)
Q Consensus       175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  254 (294)
                      ....++...|+.|++..+.....        ....++. ....++++|+|.|+  .++.|...|++.-|...-.......
T Consensus       168 p~n~av~l~dlsl~V~~~~~~~~--------~v~s~p~-t~~~Tav~WSprGK--Ql~iG~nnGt~vQy~P~leik~~ip  236 (1405)
T KOG3630|consen  168 PLNSAVDLSDLSLRVKSTKQLAQ--------NVTSFPV-TNSQTAVLWSPRGK--QLFIGRNNGTEVQYEPSLEIKSEIP  236 (1405)
T ss_pred             cchhhhhccccchhhhhhhhhhh--------hhcccCc-ccceeeEEeccccc--eeeEecCCCeEEEeecccceeeccc
Confidence            44667778899999888764432        1222222 35578999999994  7999999999998876554211222


Q ss_pred             eccccccCCCeEEEEEccCCCEEEE
Q 022590          255 RLSHAQSKSPIRQTAMSYDGSTILS  279 (294)
Q Consensus       255 ~~~~~~~~~~v~~~~~s~~~~~l~s  279 (294)
                      ..+. .....|.+++|-....+|++
T Consensus       237 ~Pp~-~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  237 EPPV-EENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             CCCc-CCCcceeEEEEecceeEEEE
Confidence            2221 11467999999887777765

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.40  E-value=0.43  Score=40.47  Aligned_cols=106  Identities=9%  Similarity=0.205  Sum_probs=64.9

Q ss_pred             cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc-----CCC
Q 022590          175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-----SSP  249 (294)
Q Consensus       175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-----~~~  249 (294)
                      +...++-+....+.|||.+.+..       ..-..+ .....|..+.|...+.+..+++-+-.+.|.+|--.     ...
T Consensus        41 ~k~a~V~~~~~~LtIWD~~~~~l-------E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~  112 (631)
T PF12234_consen   41 KKIAVVDSSRSELTIWDTRSGVL-------EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG  112 (631)
T ss_pred             CcEEEEECCCCEEEEEEcCCcEE-------EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence            44444545566799999987642       111222 34577889988876666677777778888888542     111


Q ss_pred             --ceeeeeccccccC-CCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          250 --PVLIARLSHAQSK-SPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       250 --~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                        ......+....+. .+|.+..|.++|.+++.+  ++.+.|++
T Consensus       113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d  154 (631)
T PF12234_consen  113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD  154 (631)
T ss_pred             cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence              1223333222333 589999999999766544  34566665

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.34  E-value=0.18  Score=42.64  Aligned_cols=107  Identities=10%  Similarity=0.023  Sum_probs=68.2

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCC-CCceEEEeeCCCcEEEEEcC---------CCce
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQ---------TGIC   88 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~---------~~~~   88 (294)
                      .-++ ..++-+....+.|||...+.....-. ...+.|.++.|... +++.+++.+....|.++--.         +...
T Consensus        39 s~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~  117 (631)
T PF12234_consen   39 SIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP  117 (631)
T ss_pred             ccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence            3444 33344445679999998776433222 34788999999543 67788888888999998542         1123


Q ss_pred             EEEeeccCCCC-CceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           89 ILIFAGAGGHR-NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        89 ~~~~~~~~~~~-~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      +..+... .|+ .+|.+..|.+ ++.+++ |+ ++.+.|+|-.-
T Consensus       118 i~~i~i~-~~T~h~Igds~Wl~-~G~LvV-~s-GNqlfv~dk~~  157 (631)
T PF12234_consen  118 IRKIDIS-SHTPHPIGDSIWLK-DGTLVV-GS-GNQLFVFDKWL  157 (631)
T ss_pred             eEEEEee-cCCCCCccceeEec-CCeEEE-Ee-CCEEEEECCCc
Confidence            3333321 344 6899999998 776444 33 36788887543

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.32  E-value=0.13  Score=42.42  Aligned_cols=121  Identities=17%  Similarity=0.136  Sum_probs=71.0

Q ss_pred             cCceeEEEEEeecC-CCceEEEEeecCCeEEEEEcC-----Cccccceeccc-Cc--c--eEEEEeCCCCCceEEEeeCC
Q 022590            7 KEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVS-----NEKLHKSFVGH-GD--S--INEIRTQPLKPSLVVSASKD   75 (294)
Q Consensus         7 h~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~h-~~--~--v~~~~~~~~~~~~l~s~~~d   75 (294)
                      .-+.|..++|++-- .+.+.|++......|.||.+.     .++....-..+ ..  +  -..+.|+| ....|+.-...
T Consensus        55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~  133 (671)
T PF15390_consen   55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTAR  133 (671)
T ss_pred             ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecC
Confidence            34679999999421 222245555666789999885     22222211111 11  1  24578999 77777766655


Q ss_pred             CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEee-ecCCcEEEEeccc
Q 022590           76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKE  131 (294)
Q Consensus        76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~-~~dg~i~~wd~~~  131 (294)
                      ..-.+.++...........  ...+.|.|.+|.+ +|+.|+++ +..=.-++||-.+
T Consensus       134 dvSV~~sV~~d~srVkaDi--~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~q  187 (671)
T PF15390_consen  134 DVSVLPSVHCDSSRVKADI--KTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSAQ  187 (671)
T ss_pred             ceeEeeeeeeCCceEEEec--cCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCch
Confidence            5445677764443333222  3677899999999 66555554 4434457777554

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.29  E-value=0.18  Score=36.46  Aligned_cols=92  Identities=15%  Similarity=0.170  Sum_probs=64.7

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEE--cCCccc-----cceecc---cCc-ceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVID--VSNEKL-----HKSFVG---HGD-SINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~--~~~~~~-----~~~~~~---h~~-~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      +.++|.  .+.+.+-++-+.+-.|.-||  ..+|..     +..++.   ... .--.++... ++.+.+++-..++|..
T Consensus       161 Ngl~Wd--~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~  237 (310)
T KOG4499|consen  161 NGLAWD--SDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQK  237 (310)
T ss_pred             cccccc--ccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEE
Confidence            457887  56665777788888898888  455532     222221   111 122344454 7888899999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEec
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHP  109 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~  109 (294)
                      .|..+|+.+..+..   ....|++++|--
T Consensus       238 ~dp~tGK~L~eikl---Pt~qitsccFgG  263 (310)
T KOG4499|consen  238 VDPTTGKILLEIKL---PTPQITSCCFGG  263 (310)
T ss_pred             ECCCCCcEEEEEEc---CCCceEEEEecC
Confidence            99999999999985   578899999964

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.21  E-value=0.5  Score=38.10  Aligned_cols=111  Identities=14%  Similarity=0.160  Sum_probs=63.3

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCcccc--ce-e-cccCcceEEEEeCC---CCC-ceEEEeeCCCcEEEEEcCCC--c--
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLH--KS-F-VGHGDSINEIRTQP---LKP-SLVVSASKDESVRLWNVQTG--I--   87 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~-~-~~h~~~v~~~~~~~---~~~-~~l~s~~~dg~i~vwd~~~~--~--   87 (294)
                      +++...+++|+..|.++||+...+...  .. + ..-..+|..+..-+   ... ..||. =.-..+.||.+...  .  
T Consensus        34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            334448999999999999998544311  11 1 12356888777532   122 33444 44577888877321  1  


Q ss_pred             --eEEEeeccCCCC--CceeEEEEecCC----CceEEeeecCCcEEEEeccc
Q 022590           88 --CILIFAGAGGHR--NEVLSVDFHPSD----IYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        88 --~~~~~~~~~~~~--~~v~~l~~~~~~----~~~l~~~~~dg~i~~wd~~~  131 (294)
                        ....+.....|.  .....++.-|.+    ..++.+-+.||.+.+|+-+.
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~  164 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES  164 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc
Confidence              001111111243  233444444422    46788889999999999876

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.20  E-value=0.68  Score=39.55  Aligned_cols=50  Identities=16%  Similarity=0.321  Sum_probs=37.7

Q ss_pred             CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           76 ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        76 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      -.|+|++. +|+.+..+.-   ....+-.+.|+  +...|++...+|++++|++-.
T Consensus        64 ~~I~If~~-sG~lL~~~~w---~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILW---KHGELIGMGWS--DDEELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eeEEEEec-cccchHHHHh---cCCCeeeeccc--CCceEEEEeccceEEEeecch
Confidence            45888887 6776665542   33378899998  455688889999999999876

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.12  E-value=0.56  Score=37.85  Aligned_cols=58  Identities=7%  Similarity=0.058  Sum_probs=42.4

Q ss_pred             ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      .++.+-+.||.+.+|+-+...  ....++..-..+   .+++.+....+++++.+..+.-|..
T Consensus       146 ~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llPg---Pl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  146 DFICVQSMDGSLSFFEQESFA--FSRFLPDFLLPG---PLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             eEEEEEecCceEEEEeCCcEE--EEEEcCCCCCCc---CeEEeecCCEEEEecCceeEEEecH
Confidence            689999999999999987652  333333222223   4678888889999998888887765

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.05  E-value=0.31  Score=38.98  Aligned_cols=158  Identities=9%  Similarity=0.009  Sum_probs=86.7

Q ss_pred             EEEEeCCCCCceEEEeeCCCcEEEEEcCC--CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccc
Q 022590           57 NEIRTQPLKPSLVVSASKDESVRLWNVQT--GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT  134 (294)
Q Consensus        57 ~~~~~~~~~~~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  134 (294)
                      +.+-|.. .++.|++. ..|.+.=|-+..  ......+..  ...++|.++.|++ ++..+|+--.|++|.+++......
T Consensus        26 ngvFfDD-aNkqlfav-rSggatgvvvkgpndDVpiSfdm--~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~  100 (657)
T KOG2377|consen   26 NGVFFDD-ANKQLFAV-RSGGATGVVVKGPNDDVPISFDM--DDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNS  100 (657)
T ss_pred             cceeecc-CcceEEEE-ecCCeeEEEEeCCCCCCCceeee--cCCCceeEEEecc-CcceEEEEecCceEEEEecCCCch
Confidence            4455554 33333333 334455555432  223333332  3567999999999 999999999999999998844111


Q ss_pred             ccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC
Q 022590          135 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP  213 (294)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  213 (294)
                      .                   .............|....|. ..-++.... ..+.+|-....+.        .++..+.+
T Consensus       101 ~-------------------l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~-~G~e~y~v~pekr--------slRlVks~  152 (657)
T KOG2377|consen  101 Q-------------------LEYTQECKTKNANILGFCWTSSTEIAFITD-QGIEFYQVLPEKR--------SLRLVKSH  152 (657)
T ss_pred             h-------------------hHHHHHhccCcceeEEEEEecCeeEEEEec-CCeEEEEEchhhh--------hhhhhhhc
Confidence            1                   01111222234457777776 333444333 3356665543221        34445556


Q ss_pred             CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      ...|....|+++..--+|+++-..+.+.=+.++.
T Consensus       153 ~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~  186 (657)
T KOG2377|consen  153 NLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA  186 (657)
T ss_pred             ccCccEEEEccccceEeeeccccccccccEEEee
Confidence            6678888888887532333333444444444444

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=0.85  Score=39.01  Aligned_cols=105  Identities=13%  Similarity=0.176  Sum_probs=60.0

Q ss_pred             EEEeecCCCceEEEEeecC----------CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590           14 VSWACNVDGIPFLVAGGIN----------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +-|.+.|-|. -+|..-.+          -.|+|++. +|+.+..+.-....+-.+.|+.  ...|+....+|++.+|++
T Consensus        36 ~~fa~Ap~gG-pIAV~r~p~~~~~~~~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~  111 (829)
T KOG2280|consen   36 VYFACAPFGG-PIAVTRSPSKLVPLYSARPYIRIFNI-SGQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGL  111 (829)
T ss_pred             eEEEecccCC-ceEEEecccccccccccceeEEEEec-cccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeec
Confidence            3344446565 34444333          34788885 5666666654455888999996  456777889999999998


Q ss_pred             CCCceEEEeec-cCCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590           84 QTGICILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  126 (294)
Q Consensus        84 ~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~  126 (294)
                      - |+.+..... .......|..+.+.. +|-.++  ..+|.+.+
T Consensus       112 ~-ge~ie~~svg~e~~~~~I~ec~~f~-~GVavl--t~~g~v~~  151 (829)
T KOG2280|consen  112 L-GEFIESNSVGFESQMSDIVECRFFH-NGVAVL--TVSGQVIL  151 (829)
T ss_pred             c-hhhhcccccccccccCceeEEEEec-CceEEE--ecCCcEEE
Confidence            4 444433211 011233455555554 443333  33454443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.98  E-value=0.33  Score=41.59  Aligned_cols=117  Identities=11%  Similarity=0.072  Sum_probs=75.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-----------c---------ccceecccCcceEEEEeC--CCCCc
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-----------K---------LHKSFVGHGDSINEIRTQ--PLKPS   67 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----------~---------~~~~~~~h~~~v~~~~~~--~~~~~   67 (294)
                      .|+-+....--... .|+.+..||.|.+|.+++-           +         +...+. -...+++++++  . ..+
T Consensus       102 tIN~i~v~~lg~~E-VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~r  178 (717)
T PF08728_consen  102 TINFIKVGDLGGEE-VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSR  178 (717)
T ss_pred             eeeEEEecccCCee-EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cce
Confidence            45555444222334 8999999999999976321           0         111111 34578999998  6 678


Q ss_pred             eEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCC----Cc-eEEeeecCCcEEEEec
Q 022590           68 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD----IY-RIASCGMDNTVKIWSM  129 (294)
Q Consensus        68 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----~~-~l~~~~~dg~i~~wd~  129 (294)
                      +||+++....|.|+-...............|...|.+|+|.+.+    +. .+++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888888665421111111011366789999998743    22 7888899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.91  E-value=0.4  Score=34.37  Aligned_cols=149  Identities=13%  Similarity=0.103  Sum_probs=84.2

Q ss_pred             EEEEeecCCeEEEEEcCC--ccccceecccCcceEEEEeCCCCCceEEEeeCC---C---cEEEE-EcCC----CceEE-
Q 022590           25 FLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---E---SVRLW-NVQT----GICIL-   90 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g---~i~vw-d~~~----~~~~~-   90 (294)
                      .|+.+...+.|.+|++.+  .++..++.. -+.|..+.++. .|++|++--.+   .   .+|+| |.+.    .+.+. 
T Consensus        30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            454446677899999873  345555653 37899999999 89999986432   2   56665 2211    11111 


Q ss_pred             --------------------EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590           91 --------------------IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  150 (294)
Q Consensus        91 --------------------~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (294)
                                          .+..  .-..++.+++-.|..|+++ .|+ ++.+.+|.+....... ..+          
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiEl--Pl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~-~~~----------  172 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIEL--PLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQS-EKF----------  172 (215)
T ss_pred             EEcccccccCCCCccccceEEEEe--cCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEec-ccc----------
Confidence                                1111  2355688999999777744 444 4689999988632210 000          


Q ss_pred             CceeeeceEEeecCCC-ceeecceecceEEEeeCCCeEEEecC
Q 022590          151 TKYVQFPVFIASVHSN-YVDCNRWLGDFILSKSVDNEIVLWEP  192 (294)
Q Consensus       151 ~~~~~~~~~~~~~~~~-~i~~~~~~~~~l~~~~~d~~i~iwd~  192 (294)
                       .........+..|.+ ....+++.++++|..+. -.+++..+
T Consensus       173 -~~lDFe~~l~~~~~~~~p~~v~ic~~yiA~~s~-~ev~Vlkl  213 (215)
T PF14761_consen  173 -SFLDFERSLIDHIDNFKPTQVAICEGYIAVMSD-LEVLVLKL  213 (215)
T ss_pred             -cEEechhhhhheecCceEEEEEEEeeEEEEecC-CEEEEEEE
Confidence             000111111122222 25567777888888664 45555543

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.84  E-value=0.0015  Score=51.64  Aligned_cols=150  Identities=12%  Similarity=0.128  Sum_probs=99.3

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL   90 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~   90 (294)
                      +..+.+...|.+. -++.++.+..+..||-. ++...... .++....++|....+..++.+-..+.+.+||+.+.... 
T Consensus        35 v~pi~~~w~~e~~-nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-  110 (615)
T KOG2247|consen   35 VGPIIHRWRPEGH-NLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-  110 (615)
T ss_pred             cccceeeEecCCC-ceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-
Confidence            3344444447776 48888888889999843 44333333 34566778888844556667778899999999765322 


Q ss_pred             EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceee
Q 022590           91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC  170 (294)
Q Consensus        91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (294)
                      .+.....|....  +.|++ +...++.+-..|.+.+++-...                       ........|...+.+
T Consensus       111 qLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgts-----------------------R~iiv~Gkh~RRgtq  164 (615)
T KOG2247|consen  111 QLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTS-----------------------RRIIVMGKHQRRGTQ  164 (615)
T ss_pred             HHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccch-----------------------hhhhhhcccccceeE
Confidence            222211233333  78998 7788888989999999998872                       223334448888888


Q ss_pred             ccee-cceEEEeeCCCeEEEe
Q 022590          171 NRWL-GDFILSKSVDNEIVLW  190 (294)
Q Consensus       171 ~~~~-~~~l~~~~~d~~i~iw  190 (294)
                      +++. .++.+.++.|..+.+-
T Consensus       165 ~av~lEd~vil~dcd~~L~v~  185 (615)
T KOG2247|consen  165 IAVTLEDYVILCDCDNTLSVT  185 (615)
T ss_pred             EEecccceeeecCcHHHHHHh
Confidence            8887 7777777777655443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.80  E-value=0.059  Score=39.25  Aligned_cols=80  Identities=11%  Similarity=0.110  Sum_probs=51.6

Q ss_pred             ceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCcee-eeeee----cCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          167 YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADI-LQKYP----VPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       167 ~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~----~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      ++..+..+++++++.+.+|.+++||+.+.+.........+ +....    .....|..+.++.+|.  -+++ -.+|..+
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~-lsng~~y   90 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVT-LSNGDSY   90 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEE-EeCCCEE
Confidence            3444555688999999999999999998865433211111 11100    3456788888887774  3333 3467889


Q ss_pred             EEeccCCC
Q 022590          242 VWELQSSP  249 (294)
Q Consensus       242 i~d~~~~~  249 (294)
                      .|+..-..
T Consensus        91 ~y~~~L~~   98 (219)
T PF07569_consen   91 SYSPDLGC   98 (219)
T ss_pred             Eeccccce
Confidence            99876654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.75  E-value=0.45  Score=33.84  Aligned_cols=114  Identities=18%  Similarity=0.052  Sum_probs=68.3

Q ss_pred             CCceEEEEeecC--CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCC
Q 022590           21 DGIPFLVAGGIN--GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH   98 (294)
Q Consensus        21 ~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~   98 (294)
                      +|. ++.+.+.-  ..|++||+.+++.+.+-+-....+..=-.......+.+-.-.+|.-..+|.++-+++..+.    .
T Consensus        55 ~g~-i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~----y  129 (262)
T COG3823          55 DGH-ILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS----Y  129 (262)
T ss_pred             CCE-EEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc----c
Confidence            443 66666543  4699999999887655432211221111111133444555678888899999888888776    6


Q ss_pred             CCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceee
Q 022590           99 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW  142 (294)
Q Consensus        99 ~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  142 (294)
                      .+.=+.++..  +.+ |+.+....+++.-|..++.....-.++.
T Consensus       130 ~GeGWgLt~d--~~~-LimsdGsatL~frdP~tfa~~~~v~VT~  170 (262)
T COG3823         130 EGEGWGLTSD--DKN-LIMSDGSATLQFRDPKTFAELDTVQVTD  170 (262)
T ss_pred             CCcceeeecC--Ccc-eEeeCCceEEEecCHHHhhhcceEEEEE
Confidence            6666777764  334 5555555678887877755443333333

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.72  E-value=0.0055  Score=52.32  Aligned_cols=162  Identities=22%  Similarity=0.381  Sum_probs=89.7

Q ss_pred             EEEEEeec-CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEe-----------CCCCCceEEEeeCCCcEE
Q 022590           12 YTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT-----------QPLKPSLVVSASKDESVR   79 (294)
Q Consensus        12 ~~~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~-----------~~~~~~~l~s~~~dg~i~   79 (294)
                      .-+.|++- ++.- ++..+-.++.|++.+.++... ..+.+|...+..++|           +| ||..++.+..||.++
T Consensus       184 ~~V~wcp~~~~~~-~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~  260 (1283)
T KOG1916|consen  184 QLVSWCPIAVNKV-YICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVG  260 (1283)
T ss_pred             ceeeecccccccc-eeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccc
Confidence            44455532 2333 888888999999988755433 555668777766654           77 888899999999988


Q ss_pred             EEEcC-CC----ceEEEeeccCCCC-CceeEEEEecCCC--------ceEEee-ecCCcEEEEeccccccccccceeecC
Q 022590           80 LWNVQ-TG----ICILIFAGAGGHR-NEVLSVDFHPSDI--------YRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTD  144 (294)
Q Consensus        80 vwd~~-~~----~~~~~~~~~~~~~-~~v~~l~~~~~~~--------~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~  144 (294)
                      .|.+. +|    .++...+   .|. .+-.|..++.+..        .+++++ ..+..+++|.....+......     
T Consensus       261 f~Qiyi~g~~~~rclhewk---phd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~-----  332 (1283)
T KOG1916|consen  261 FYQIYITGKIVHRCLHEWK---PHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKL-----  332 (1283)
T ss_pred             eeeeeeeccccHhhhhccC---CCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhc-----
Confidence            88764 22    2333333   455 3434443443110        123333 345668888766543321111     


Q ss_pred             CCCCCCCceeeeceEEeecCCCceeecc---eecceEEEeeCCCeEEEecCCC
Q 022590          145 LPSKFPTKYVQFPVFIASVHSNYVDCNR---WLGDFILSKSVDNEIVLWEPKM  194 (294)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~l~~~~~d~~i~iwd~~~  194 (294)
                                ...+.....|...|..+.   |--..++..+-++.|.+|.-+.
T Consensus       333 ----------~d~v~iV~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  333 ----------IDGVQIVGPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             ----------ccceEeecCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence                      111222334555554432   2233455566677788776543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.65  E-value=0.0033  Score=53.60  Aligned_cols=117  Identities=17%  Similarity=0.198  Sum_probs=69.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC--Cccccceec-----ccCcceEEEEeCCC--CCceEEEeeCCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFV-----GHGDSINEIRTQPL--KPSLVVSASKDE   76 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~-----~h~~~v~~~~~~~~--~~~~l~s~~~dg   76 (294)
                      .-.+.|-.++|. +-+-. .++  -.-|.+.||+++  .|+....+.     .-...+.-+.|.|.  +.-++..+-.++
T Consensus       130 gf~G~v~dl~fa-h~~~p-k~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  130 GFPGGVGDLQFA-HTKCP-KGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             cCCCCccccccc-ccCCh-HHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            345666667775 11221 222  334778899875  344333222     22233444555542  445677777889


Q ss_pred             cEEEEEcCCCceEEEeeccCCCCCceeEEEE-----------ecCCCceEEeeecCCcEEEEeccc
Q 022590           77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDF-----------HPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~-----------~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      +|++.++.+... ..+.   +|...+..++|           +| ||..|+.++.||.++.|.+.-
T Consensus       206 ~i~lL~~~ra~~-~l~r---sHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi  266 (1283)
T KOG1916|consen  206 EIRLLNINRALR-SLFR---SHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYI  266 (1283)
T ss_pred             ceeEeeechHHH-HHHH---hcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeee
Confidence            999888765443 2333   47766666554           67 778888888888888887654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.64  E-value=0.56  Score=34.08  Aligned_cols=100  Identities=12%  Similarity=0.087  Sum_probs=56.9

Q ss_pred             ceeeccee---cceEEEeeCCCeEEEec--CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          167 YVDCNRWL---GDFILSKSVDNEIVLWE--PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       167 ~i~~~~~~---~~~l~~~~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      --+.++|+   ..+.++-+.+-.|.-||  ..++..........+....+........+++..+|  ++.++.-..|+|.
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG--~L~Va~~ng~~V~  236 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG--NLYVATFNGGTVQ  236 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC--cEEEEEecCcEEE
Confidence            34466776   23444556666776676  55554321111111111001111122334554444  6778888889999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSY  272 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~  272 (294)
                      ..|..+++.+....++    ...|+++||--
T Consensus       237 ~~dp~tGK~L~eiklP----t~qitsccFgG  263 (310)
T KOG4499|consen  237 KVDPTTGKILLEIKLP----TPQITSCCFGG  263 (310)
T ss_pred             EECCCCCcEEEEEEcC----CCceEEEEecC
Confidence            9999999876666665    35799999963

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.63  E-value=1.4  Score=38.54  Aligned_cols=75  Identities=17%  Similarity=0.274  Sum_probs=51.2

Q ss_pred             ceEEEEeCCCCCceEEEeeCCCcEEEEEcCC----------Cce--EE-Eeec-----cCCCCCceeEEEEecCC--Cce
Q 022590           55 SINEIRTQPLKPSLVVSASKDESVRLWNVQT----------GIC--IL-IFAG-----AGGHRNEVLSVDFHPSD--IYR  114 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~----------~~~--~~-~~~~-----~~~~~~~v~~l~~~~~~--~~~  114 (294)
                      .|..|.++| ++.+|+..|..|.. |-.+..          |+.  .. .+..     ...+...|..+.|+|.+  +..
T Consensus        86 ~v~~i~~n~-~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNP-TGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECC-CCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            688899999 88888888886654 433321          111  11 1110     11345689999999942  577


Q ss_pred             EEeeecCCcEEEEeccc
Q 022590          115 IASCGMDNTVKIWSMKE  131 (294)
Q Consensus       115 l~~~~~dg~i~~wd~~~  131 (294)
                      |++-..|+++|+||+..
T Consensus       164 l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEEecCCEEEEEecCC
Confidence            88888999999999975

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.62  E-value=0.77  Score=35.50  Aligned_cols=159  Identities=12%  Similarity=0.106  Sum_probs=87.4

Q ss_pred             EEEEEcCCccccceec----c-cCcceEEEEeCCCCCceEEEeeC---------CCcEEEEEcC-CCceEEEeeccCCCC
Q 022590           35 IRVIDVSNEKLHKSFV----G-HGDSINEIRTQPLKPSLVVSASK---------DESVRLWNVQ-TGICILIFAGAGGHR   99 (294)
Q Consensus        35 i~iw~~~~~~~~~~~~----~-h~~~v~~~~~~~~~~~~l~s~~~---------dg~i~vwd~~-~~~~~~~~~~~~~~~   99 (294)
                      +.+++.+++..+..+.    + .....+.+...| ++.+.++...         -..=.+|.+. .+..+..+.   .+-
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~---~~~  162 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD---DDL  162 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec---CcE
Confidence            5566665554422221    1 123556788888 6665554333         0112466655 455555555   355


Q ss_pred             CceeEEEEecCCCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cc
Q 022590          100 NEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD  176 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~  176 (294)
                      ..-+.|+|+| ++..|+.+ +..+.|.-|++.........                ...........+..-.++.+  |+
T Consensus       163 ~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~----------------~~~~~~~~~~~G~PDG~~vDadG~  225 (307)
T COG3386         163 TIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGG----------------RRGFVDFDEEPGLPDGMAVDADGN  225 (307)
T ss_pred             EecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCC----------------cceEEEccCCCCCCCceEEeCCCC
Confidence            6678999999 66555544 55588888887631000000                11112222234444455554  55


Q ss_pred             eEEEeeCCC-eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590          177 FILSKSVDN-EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  224 (294)
Q Consensus       177 ~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (294)
                      +.+++...| .|..|+.. ++         .+..+..+...+++++|--
T Consensus       226 lw~~a~~~g~~v~~~~pd-G~---------l~~~i~lP~~~~t~~~FgG  264 (307)
T COG3386         226 LWVAAVWGGGRVVRFNPD-GK---------LLGEIKLPVKRPTNPAFGG  264 (307)
T ss_pred             EEEecccCCceEEEECCC-Cc---------EEEEEECCCCCCccceEeC
Confidence            554544444 89999987 44         5677777766677777754

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=95.59  E-value=1.7  Score=39.40  Aligned_cols=159  Identities=16%  Similarity=0.117  Sum_probs=88.8

Q ss_pred             CceEEeee---------cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEee
Q 022590          112 IYRIASCG---------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKS  182 (294)
Q Consensus       112 ~~~l~~~~---------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~  182 (294)
                      ..+|++|.         .-|.+.++|+-.-.+..          .+ +...............++|..++--..+|++ +
T Consensus      1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPep----------gk-P~t~~KlKel~~eE~KGtVsavceV~G~l~~-~ 1113 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEP----------GK-PFTKNKLKELYIEEQKGTVSAVCEVRGHLLS-S 1113 (1366)
T ss_pred             cceEEEEEeecccccccCcccEEEEEEEEecCCC----------CC-CcccceeeeeehhhcccceEEEEEeccEEEE-c
Confidence            35677764         24789999987621111          11 1111122233334456777777665555555 3


Q ss_pred             CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccC
Q 022590          183 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK  262 (294)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  262 (294)
                      ....|.+|++.....      ...+.-+   ..++.......-.  ++++.|+--..|.+.-..... .....+......
T Consensus      1114 ~GqKI~v~~l~r~~~------ligVaFi---D~~~yv~s~~~vk--nlIl~gDV~ksisfl~fqeep-~rlsL~srd~~~ 1181 (1366)
T KOG1896|consen 1114 QGQKIIVRKLDRDSE------LIGVAFI---DLPLYVHSMKVVK--NLILAGDVMKSISFLGFQEEP-YRLSLLSRDFEP 1181 (1366)
T ss_pred             cCcEEEEEEeccCCc------ceeeEEe---ccceeEEehhhhh--hheehhhhhhceEEEEEccCc-eEEEEeecCCch
Confidence            456899999943321      0111111   2223333333333  578888877778887776543 223333322233


Q ss_pred             CCeEEEEEccCCC--EEEEeccCCcEEEEecCCC
Q 022590          263 SPIRQTAMSYDGS--TILSCCEDGAIWRWDAIPT  294 (294)
Q Consensus       263 ~~v~~~~~s~~~~--~l~s~~~dg~i~vw~~~~~  294 (294)
                      -.+.++.|--+|.  +++++..|+.|++|-..|+
T Consensus      1182 l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1182 LNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred             hhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence            4577788877765  6788899999999987764

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.55  E-value=0.82  Score=35.35  Aligned_cols=223  Identities=14%  Similarity=0.033  Sum_probs=114.2

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeec-cCC-
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG-AGG-   97 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~-   97 (294)
                      ++...++.+--..+.|.-|+..+++. ..+. +.+.+.++.... .+..|+++.. | +.+++.+++..+..+.. ..+ 
T Consensus        34 ~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d-~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~~~~  108 (307)
T COG3386          34 PDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALID-AGGRLIACEH-G-VRLLDPDTGGKITLLAEPEDGL  108 (307)
T ss_pred             CCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeec-CCCeEEEEcc-c-cEEEeccCCceeEEeccccCCC
Confidence            55554666667778888888876643 2333 334445554444 3445555443 3 56677766665333221 111 


Q ss_pred             CCCceeEEEEecCCCceEEeeecCC----------cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           98 HRNEVLSVDFHPSDIYRIASCGMDN----------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        98 ~~~~v~~l~~~~~~~~~l~~~~~dg----------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      -....+.+...| ++.+.++.. .+          .-.+|.+...                      .........+-..
T Consensus       109 ~~~r~ND~~v~p-dG~~wfgt~-~~~~~~~~~~~~~G~lyr~~p~----------------------g~~~~l~~~~~~~  164 (307)
T COG3386         109 PLNRPNDGVVDP-DGRIWFGDM-GYFDLGKSEERPTGSLYRVDPD----------------------GGVVRLLDDDLTI  164 (307)
T ss_pred             CcCCCCceeEcC-CCCEEEeCC-CccccCccccCCcceEEEEcCC----------------------CCEEEeecCcEEe
Confidence            124567788888 666444332 21          0012222210                      1112223333444


Q ss_pred             eeeccee--cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC-eEEEE
Q 022590          168 VDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG-KIFVW  243 (294)
Q Consensus       168 i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-~i~i~  243 (294)
                      -+.++|+  ++.|+.+-. .+.|.-|++......... . .............-.++...++  .+.+++-..| .|..|
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~-~-~~~~~~~~~~G~PDG~~vDadG--~lw~~a~~~g~~v~~~  240 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG-R-RGFVDFDEEPGLPDGMAVDADG--NLWVAAVWGGGRVVRF  240 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC-c-ceEEEccCCCCCCCceEEeCCC--CEEEecccCCceEEEE
Confidence            5677887  555555544 478888877631111110 1 1122222334555667777777  3443444443 89999


Q ss_pred             eccCCCceeeeeccccccCCCeEEEEEc-cCCCEEEEe
Q 022590          244 ELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGSTILSC  280 (294)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~  280 (294)
                      +.. ++......++.    ..+++++|- |+.+.|...
T Consensus       241 ~pd-G~l~~~i~lP~----~~~t~~~FgG~~~~~L~iT  273 (307)
T COG3386         241 NPD-GKLLGEIKLPV----KRPTNPAFGGPDLNTLYIT  273 (307)
T ss_pred             CCC-CcEEEEEECCC----CCCccceEeCCCcCEEEEE
Confidence            998 66555555442    457778885 445544433

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.52  E-value=0.31  Score=44.10  Aligned_cols=160  Identities=8%  Similarity=-0.000  Sum_probs=85.1

Q ss_pred             eecCCeEEEEEcCCccccceecccCcceEEEEeCCCC--------CceEEEeeCCCcEEEEEcCCCceEE-------Eee
Q 022590           29 GGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--------PSLVVSASKDESVRLWNVQTGICIL-------IFA   93 (294)
Q Consensus        29 ~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~-------~~~   93 (294)
                      .+.|+.+.+|+.+++.....+.+-...|..+..-...        ..+|+.++. -.|.++-+.-.+...       .+.
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~-~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATP-VEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEeccc-ceEEEEEEEeccccCccccccccee
Confidence            3567899999999988778887777777776642211        223444433 446665443211110       111


Q ss_pred             ccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc--cccccccceeecCCCCCCCCceeeeceEEe-ecCCCceee
Q 022590           94 GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE--FWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDC  170 (294)
Q Consensus        94 ~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~  170 (294)
                      . .-....|+|+.... +|+.|++| .||  .+|.+.-  ..........-....... .......+..+ ..+..+|..
T Consensus       174 i-~~dg~~V~~I~~t~-nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~-ls~lvPs~~~~~~~~~dpI~q  247 (1311)
T KOG1900|consen  174 I-SVDGVSVNCITYTE-NGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSV-LSSLVPSLLSVPGSSKDPIRQ  247 (1311)
T ss_pred             e-ecCCceEEEEEecc-CCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhH-HHHhhhhhhcCCCCCCCccee
Confidence            1 01345688888554 77755554 566  5554432  100000000000000000 00000112222 366778999


Q ss_pred             ccee--cceEEEeeCCCeEEEecCCCC
Q 022590          171 NRWL--GDFILSKSVDNEIVLWEPKMK  195 (294)
Q Consensus       171 ~~~~--~~~l~~~~~d~~i~iwd~~~~  195 (294)
                      +..+  .+.+.+-+..|+|..||+...
T Consensus       248 i~ID~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  248 ITIDNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             eEeccccceeeeeccCceEEEEEccCC
Confidence            8886  678889999999999999873

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.51  E-value=0.13  Score=45.65  Aligned_cols=115  Identities=14%  Similarity=0.030  Sum_probs=73.9

Q ss_pred             EEEEEeecCCCceEEEEeec-CCeEEEEEcCCcccc-----ceec------ccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590           12 YTVSWACNVDGIPFLVAGGI-NGIIRVIDVSNEKLH-----KSFV------GHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~-----~~~~------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      ..+.+.+.+|+....+.-+. +-.|..||+.+-..-     .-+.      ....-..++.|.|.-....+....|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            33444445776622333333 336888998653211     1111      12234577889985555677788899999


Q ss_pred             EEEcCCCce-EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           80 LWNVQTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        80 vwd~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      +..+..... ...+.    .....++++|+| .+..++.|-..|++.-|...-
T Consensus       182 V~~~~~~~~~v~s~p----~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l  229 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFP----VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL  229 (1405)
T ss_pred             hhhhhhhhhhhcccC----cccceeeEEecc-ccceeeEecCCCeEEEeeccc
Confidence            987754322 22233    667889999999 999999999999998886654

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.38  Score=38.52  Aligned_cols=113  Identities=12%  Similarity=-0.036  Sum_probs=70.5

Q ss_pred             eccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590          170 CNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       170 ~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                      .+-|+ .+..+.+...|.+.=|-.....      ..-++..-....++|.++.|++|.  ..+|+--.+..|.+++....
T Consensus        27 gvFfDDaNkqlfavrSggatgvvvkgpn------dDVpiSfdm~d~G~I~SIkFSlDn--kilAVQR~~~~v~f~nf~~d   98 (657)
T KOG2377|consen   27 GVFFDDANKQLFAVRSGGATGVVVKGPN------DDVPISFDMDDKGEIKSIKFSLDN--KILAVQRTSKTVDFCNFIPD   98 (657)
T ss_pred             ceeeccCcceEEEEecCCeeEEEEeCCC------CCCCceeeecCCCceeEEEeccCc--ceEEEEecCceEEEEecCCC
Confidence            34444 3333444444555556554433      111233333456789999999999  58999999999999999766


Q ss_pred             CceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++......++......|....|+.. .-+|..+..| +-+|-+.
T Consensus        99 ~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen   99 NSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVL  140 (657)
T ss_pred             chhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEc
Confidence            6555555544455566889999866 4455554444 5555443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=95.44  E-value=1.4  Score=37.23  Aligned_cols=67  Identities=15%  Similarity=0.073  Sum_probs=44.2

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecc--cC--cceEE-EEeCCCCCceEEEee------CCCcEEEEEcCCCceEEEee
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVG--HG--DSINE-IRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFA   93 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~--h~--~~v~~-~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~   93 (294)
                      .++.++.|+.+.-.|..+|+.+.....  +.  ..+++ -...  ++ .++.+.      .+|.|.-+|.++|+.+-.+.
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            577888899999999999998766542  11  11111 1111  33 344443      36899999999999887765


Q ss_pred             c
Q 022590           94 G   94 (294)
Q Consensus        94 ~   94 (294)
                      .
T Consensus       199 ~  199 (527)
T TIGR03075       199 T  199 (527)
T ss_pred             C
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.38  E-value=0.44  Score=31.24  Aligned_cols=107  Identities=8%  Similarity=0.216  Sum_probs=63.4

Q ss_pred             cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEE---EcccCCcceEEEEcCCCeEEEEeccCCCce
Q 022590          175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK---FSCDFHYNAAAIGNREGKIFVWELQSSPPV  251 (294)
Q Consensus       175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  251 (294)
                      ..-|++++..|+|.|++.......... ....+..+.. ...|++++   +.|+.....|+.|+. ..+..||+..+...
T Consensus        10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~   86 (136)
T PF14781_consen   10 HPCLACATTGGKVFIHNPHERGQRTGR-QDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDL   86 (136)
T ss_pred             ceeEEEEecCCEEEEECCCcccccccc-ccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchh
Confidence            346888889999999998765432211 1223333333 34466664   444555578888875 56899999988755


Q ss_pred             eeeeccccccCCCeEEEEEcc----CCCEEEEeccCCcEEEEe
Q 022590          252 LIARLSHAQSKSPIRQTAMSY----DGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~s~----~~~~l~s~~~dg~i~vw~  290 (294)
                      +...++     ..|+++.+-.    +.++++.| .+..|.=||
T Consensus        87 Fyke~~-----DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd  123 (136)
T PF14781_consen   87 FYKEVP-----DGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFD  123 (136)
T ss_pred             hhhhCc-----cceeEEEEEecCCCCCcEEEEC-ceEEEEEeC
Confidence            555444     4577776632    23445544 344444444

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.21  E-value=0.76  Score=32.99  Aligned_cols=122  Identities=14%  Similarity=0.169  Sum_probs=63.9

Q ss_pred             ceEEEeeCCCcEEEEEcCC--CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC------cEEEE-eccccccccc
Q 022590           67 SLVVSASKDESVRLWNVQT--GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIW-SMKEFWTYVE  137 (294)
Q Consensus        67 ~~l~s~~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg------~i~~w-d~~~~~~~~~  137 (294)
                      +.|+.+...+.|.+|++.+  .+....|.    .-+.|..+.++. .|++++|--.+.      .+|+| +.+.......
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~----Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~  103 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS----TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS  103 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc----chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence            3444445667899999883  34555665    558899999998 889999874432      44553 2332110000


Q ss_pred             c-ceeecC---CCCCCCCceeeeceEEe--ecCCCceeecceecceEEEeeCCCeEEEecCCCC
Q 022590          138 K-SFTWTD---LPSKFPTKYVQFPVFIA--SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMK  195 (294)
Q Consensus       138 ~-~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~  195 (294)
                      . ....-+   .+........+..+..+  ..++..|.|....|++++.+  ++.+.+|.+...
T Consensus       104 ~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~  165 (215)
T PF14761_consen  104 PVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ  165 (215)
T ss_pred             cEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence            0 000111   11111111111112222  23444555555568877753  568888887654

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=95.16  E-value=0.53  Score=30.89  Aligned_cols=100  Identities=8%  Similarity=0.071  Sum_probs=64.6

Q ss_pred             EEEEeecCCeEEEEEcCCcc--------ccceecccCcceEEEEeCCC----CCceEEEeeCCCcEEEEEcCCCceEEEe
Q 022590           25 FLVAGGINGIIRVIDVSNEK--------LHKSFVGHGDSINEIRTQPL----KPSLVVSASKDESVRLWNVQTGICILIF   92 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~--------~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~   92 (294)
                      .|++++.-|.|.|++.....        .++.+. -...|++|+-.+.    +...|+.|+. .++..||+....-+..-
T Consensus        12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~d~Fyk   89 (136)
T PF14781_consen   12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNSDLFYK   89 (136)
T ss_pred             eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCchhhhh
Confidence            78888899999999876432        233333 4567888765442    3556777766 67889999877655332


Q ss_pred             eccCCCCCceeEEEEec---CCCceEEeeecCCcEEEEeccc
Q 022590           93 AGAGGHRNEVLSVDFHP---SDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        93 ~~~~~~~~~v~~l~~~~---~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                          .-.+.|+++.+-.   .... ++..+.+..|.-||...
T Consensus        90 ----e~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   90 ----EVPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             ----hCccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCC
Confidence                2556788887632   1234 44444467788777665

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.10  E-value=0.27  Score=35.87  Aligned_cols=68  Identities=18%  Similarity=0.415  Sum_probs=48.1

Q ss_pred             EcccCCcceEEEEcCCCeEEEEeccCCCceeee-ecc---cc------ccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          222 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-RLS---HA------QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       222 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~---~~------~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      +...+  .++++-+.+|.+++||+.+.+..... .+.   ..      .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus        18 l~~~~--~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   18 LECNG--SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEeCC--CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            44445  57899999999999999987643222 111   10      2446789999999998777764 578899886


Q ss_pred             C
Q 022590          292 I  292 (294)
Q Consensus       292 ~  292 (294)
                      +
T Consensus        95 ~   95 (219)
T PF07569_consen   95 D   95 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=94.93  E-value=0.81  Score=34.80  Aligned_cols=98  Identities=9%  Similarity=0.132  Sum_probs=62.4

Q ss_pred             CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee------CCCcEEEEEcCCCceEEEeec-c-CCCCCcee
Q 022590           32 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAG-A-GGHRNEVL  103 (294)
Q Consensus        32 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~-~-~~~~~~v~  103 (294)
                      -..|++||..+.+-...-.+-.+.|++|.|.. +.+++++|.      ....+..||..+..- ..+.. . ..-.++|.
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~   92 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVT   92 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEE
Confidence            35699999887766555555678999999986 677777774      456788899866543 23331 0 12347888


Q ss_pred             EEEEecCCCceEE-eee-cCC--cEEEEeccc
Q 022590          104 SVDFHPSDIYRIA-SCG-MDN--TVKIWSMKE  131 (294)
Q Consensus       104 ~l~~~~~~~~~l~-~~~-~dg--~i~~wd~~~  131 (294)
                      .+.+...+...+. .|. .+|  .|..||=.+
T Consensus        93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~  124 (281)
T PF12768_consen   93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGSS  124 (281)
T ss_pred             EEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence            8888654544344 443 233  466665544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.92  E-value=2.5  Score=37.37  Aligned_cols=69  Identities=12%  Similarity=0.029  Sum_probs=49.1

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcc--------eEEEEeCC---------------CCCceEEEeeCCCcEEEE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDS--------INEIRTQP---------------LKPSLVVSASKDESVRLW   81 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~--------v~~~~~~~---------------~~~~~l~s~~~dg~i~vw   81 (294)
                      .++.++.++.|.-.|..+|+.+-++......        ...+++..               .....++.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            5777888899999999999887766532211        12233321               023478888999999999


Q ss_pred             EcCCCceEEEee
Q 022590           82 NVQTGICILIFA   93 (294)
Q Consensus        82 d~~~~~~~~~~~   93 (294)
                      |.++|+....+.
T Consensus       276 DA~TGk~~W~fg  287 (764)
T TIGR03074       276 DADTGKLCEDFG  287 (764)
T ss_pred             ECCCCCEEEEec
Confidence            999999887764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.90  E-value=1.2  Score=33.66  Aligned_cols=158  Identities=9%  Similarity=0.047  Sum_probs=95.9

Q ss_pred             cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccc
Q 022590           54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW  133 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~  133 (294)
                      +-+..+.++.   ++...+..+.-++|.|+.+.........+ ...+.-.++..   ++++..++..|.-..+.|+.+..
T Consensus        87 ~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~l-nt~gyaygv~v---sGn~aYVadlddgfLivdvsdps  159 (370)
T COG5276          87 DLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFL-NTDGYAYGVYV---SGNYAYVADLDDGFLIVDVSDPS  159 (370)
T ss_pred             hhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccc-cCCceEEEEEe---cCCEEEEeeccCcEEEEECCCCC
Confidence            4456666754   56777777777999999877655443321 12244455555   56778777767778888988732


Q ss_pred             cccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC
Q 022590          134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP  213 (294)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  213 (294)
                      .                    .............-..+..+|++-..+..|+-+.+-|+.....      ...+..... 
T Consensus       160 s--------------------P~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~s------Pvli~~~n~-  212 (370)
T COG5276         160 S--------------------PQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHS------PVLIGSYNT-  212 (370)
T ss_pred             C--------------------ceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCC------CeEEEEEec-
Confidence            1                    0111122222222345666799999999999999999988753      223333332 


Q ss_pred             CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC
Q 022590          214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  249 (294)
Q Consensus       214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  249 (294)
                      ...+.++..+++.  .+++... . -+.+-|....+
T Consensus       213 g~g~~sv~vsdnr--~y~vvy~-e-gvlivd~s~~s  244 (370)
T COG5276         213 GPGTYSVSVSDNR--AYLVVYD-E-GVLIVDVSGPS  244 (370)
T ss_pred             CCceEEEEecCCe--eEEEEcc-c-ceEEEecCCCC
Confidence            3367777777765  3444433 2 36666666554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.76  E-value=1.3  Score=33.35  Aligned_cols=152  Identities=13%  Similarity=0.105  Sum_probs=88.1

Q ss_pred             CceeEEEEecCCCceEEeeecCCc-EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceE
Q 022590          100 NEVLSVDFHPSDIYRIASCGMDNT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFI  178 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l  178 (294)
                      ..-..|+|+|..+.-++.+-.-|+ ..++|...........               ...-..+.+|.-    .+-+|.+|
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~---------------s~~~RHfyGHGv----fs~dG~~L  128 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV---------------SQEGRHFYGHGV----FSPDGRLL  128 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe---------------cccCceeecccc----cCCCCcEE
Confidence            344568888877777777776665 5678887632211000               001112223321    12237777


Q ss_pred             EEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-----------------
Q 022590          179 LSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-----------------  236 (294)
Q Consensus       179 ~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-----------------  236 (294)
                      ...-.|     |.|-+||.+.+-        +.+.+++.+.-....+.+.+|+.  .++....                 
T Consensus       129 YATEndfd~~rGViGvYd~r~~f--------qrvgE~~t~GiGpHev~lm~DGr--tlvvanGGIethpdfgR~~lNlds  198 (366)
T COG3490         129 YATENDFDPNRGVIGVYDAREGF--------QRVGEFSTHGIGPHEVTLMADGR--TLVVANGGIETHPDFGRTELNLDS  198 (366)
T ss_pred             EeecCCCCCCCceEEEEeccccc--------ceecccccCCcCcceeEEecCCc--EEEEeCCceecccccCccccchhh
Confidence            765443     789999998543        35667777777777889999994  4544321                 


Q ss_pred             -CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe
Q 022590          237 -EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC  280 (294)
Q Consensus       237 -dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  280 (294)
                       .-.+.+.|..+++.+....++...+...|+.++..+||..++.+
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence             12233444444443333444433455678999999998776654

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=94.72  E-value=2.9  Score=37.12  Aligned_cols=214  Identities=11%  Similarity=0.079  Sum_probs=109.7

Q ss_pred             EEEEeecCCeEEEEEcCCccccce--------ecccCcceEEEEeC--CCCCceEEEeeCC---CcEEEEEcCC--C---
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKS--------FVGHGDSINEIRTQ--PLKPSLVVSASKD---ESVRLWNVQT--G---   86 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~--------~~~h~~~v~~~~~~--~~~~~~l~s~~~d---g~i~vwd~~~--~---   86 (294)
                      -+++-..+|.+++|-.+.......        +..-...|+..++.  . +++.++.++.+   +.|++|.+.-  +   
T Consensus        64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~-~g~~ili~t~s~~s~~l~~yrv~I~W~~~~  142 (753)
T PF11635_consen   64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSD-NGKSILIATYSSLSKQLRFYRVQIDWNAKP  142 (753)
T ss_pred             EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecC-CCCEEEEEEccccCCceEEEEEEEeccCcC
Confidence            567777889999997733222111        11233456655554  4 55455444444   7888886431  1   


Q ss_pred             -----c--eEEEeec---c--C--C-----------CCCceeEEEEec------CCCceEEeeec----CCcEEEEeccc
Q 022590           87 -----I--CILIFAG---A--G--G-----------HRNEVLSVDFHP------SDIYRIASCGM----DNTVKIWSMKE  131 (294)
Q Consensus        87 -----~--~~~~~~~---~--~--~-----------~~~~v~~l~~~~------~~~~~l~~~~~----dg~i~~wd~~~  131 (294)
                           +  +...+..   .  .  .           .-..++.+.|-+      .....+++.+.    ...|.-|.++.
T Consensus       143 ~~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~  222 (753)
T PF11635_consen  143 QQIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELRE  222 (753)
T ss_pred             ccCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence                 0  0011110   0  0  0           113567777765      12344554432    34689999988


Q ss_pred             cccccccceeecCCCCCC---CCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC----C
Q 022590          132 FWTYVEKSFTWTDLPSKF---PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE----G  202 (294)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~----~  202 (294)
                      ........+...+.....   ...........-......|.++...  +..++....||+|.++|..+.+.....    .
T Consensus       223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~  302 (753)
T PF11635_consen  223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGE  302 (753)
T ss_pred             cCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccC
Confidence            654444333322211111   0111111111112233456666554  778999999999999999887543322    1


Q ss_pred             Cceeeeeee-----cC-CCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          203 TADILQKYP-----VP-ECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       203 ~~~~~~~~~-----~~-~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      ....+....     .+ ......++|||.+  ..++.-..+|.+.
T Consensus       303 ~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~--c~~v~~~~~~~~~  345 (753)
T PF11635_consen  303 PPNTVTSLFQAGFHFPCIQPPLHVAFSPTM--CSLVQIDEDGKTK  345 (753)
T ss_pred             CccccccccccccccccCCCCceEEECccc--ceEEEEecCCCce
Confidence            211111111     11 1144568899998  4677777788765

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.65  E-value=0.2  Score=25.17  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=23.4

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecc
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG   51 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~   51 (294)
                      |+++.++++...++.|.++|..+++.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            56763455555688999999988887777664

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.63  E-value=1.8  Score=34.38  Aligned_cols=86  Identities=15%  Similarity=0.141  Sum_probs=47.1

Q ss_pred             cCCCceEEEEeecCC--eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC
Q 022590           19 NVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG   96 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~   96 (294)
                      .++|+.+|+++..||  .+.+.|+.+++..+.-.+.........++| +.+.++-...+..|+-.|+.+.+....+..  
T Consensus        44 t~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~--  120 (386)
T PF14583_consen   44 TDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYEV--  120 (386)
T ss_dssp             -TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE---
T ss_pred             CCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEEC--
Confidence            388986777666565  567778888877655443333344566778 556665555557888889999887666652  


Q ss_pred             CCCCceeEEEEe
Q 022590           97 GHRNEVLSVDFH  108 (294)
Q Consensus        97 ~~~~~v~~l~~~  108 (294)
                       ....+-...|.
T Consensus       121 -p~~~~g~gt~v  131 (386)
T PF14583_consen  121 -PDDWKGYGTWV  131 (386)
T ss_dssp             --TTEEEEEEEE
T ss_pred             -Cccccccccee
Confidence             45555456664

>PLN02153 epithiospecifier protein

Probab=94.51  E-value=1.9  Score=34.10  Aligned_cols=63  Identities=10%  Similarity=0.065  Sum_probs=32.3

Q ss_pred             CCceEEEEeecC-------CeEEEEEcCCccccce--ecc-cCc---ceEEEEeCCCCCceEEEeeCC-----CcEEEEE
Q 022590           21 DGIPFLVAGGIN-------GIIRVIDVSNEKLHKS--FVG-HGD---SINEIRTQPLKPSLVVSASKD-----ESVRLWN   82 (294)
Q Consensus        21 ~~~~~l~~~~~d-------g~i~iw~~~~~~~~~~--~~~-h~~---~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd   82 (294)
                      +++ +.+.|+.+       ..+.+||..+.+-...  ... ...   ....+.+   ++.+++.|+.+     ..+.+||
T Consensus        32 ~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd  107 (341)
T PLN02153         32 GDK-LYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYD  107 (341)
T ss_pred             CCE-EEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEE
Confidence            344 66767653       2577888776532211  100 000   1122222   45677777753     2467788


Q ss_pred             cCCCc
Q 022590           83 VQTGI   87 (294)
Q Consensus        83 ~~~~~   87 (294)
                      +.+.+
T Consensus       108 ~~t~~  112 (341)
T PLN02153        108 TVKNE  112 (341)
T ss_pred             CCCCE
Confidence            87654

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=1.6  Score=39.85  Aligned_cols=33  Identities=15%  Similarity=0.113  Sum_probs=24.9

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN   42 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~   42 (294)
                      -+....+++++|... ++|.|+..|.|++|-...
T Consensus        34 ~~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~   66 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPG   66 (993)
T ss_pred             CCCCCcceeeccccc-eEEEEEecccEEEecccc
Confidence            333455566668887 999999999999997543

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.42  E-value=3  Score=36.54  Aligned_cols=78  Identities=17%  Similarity=0.170  Sum_probs=51.3

Q ss_pred             CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC----------CCc-eeeeecc------ccccCCCeEEEEEccC--
Q 022590          213 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS----------SPP-VLIARLS------HAQSKSPIRQTAMSYD--  273 (294)
Q Consensus       213 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~-~~~~~~~------~~~~~~~v~~~~~s~~--  273 (294)
                      ..-.|..+.++|+|  .+++..+..| |.|..+..          ++. .......      .......|..+.|+|.  
T Consensus        83 ~~f~v~~i~~n~~g--~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~  159 (717)
T PF10168_consen   83 PLFEVHQISLNPTG--SLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE  159 (717)
T ss_pred             CceeEEEEEECCCC--CEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence            34568889999999  4677766655 44444421          111 1111111      1234467999999996  


Q ss_pred             -CCEEEEeccCCcEEEEecCC
Q 022590          274 -GSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       274 -~~~l~s~~~dg~i~vw~~~~  293 (294)
                       +..|+.-..|+++++||+..
T Consensus       160 ~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  160 SDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CCCeEEEEecCCEEEEEecCC
Confidence             57899999999999999863

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.33  E-value=2.5  Score=34.75  Aligned_cols=150  Identities=13%  Similarity=0.116  Sum_probs=86.6

Q ss_pred             eEEEEeCCCCCceEE-EeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC-------CCceEEeeecCCcEEEE
Q 022590           56 INEIRTQPLKPSLVV-SASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-------DIYRIASCGMDNTVKIW  127 (294)
Q Consensus        56 v~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------~~~~l~~~~~dg~i~~w  127 (294)
                      +.-+..+.++..+|+ .|+....+.-.|++.|+.+.....   |...  -+.|.|.       ....| +|-.+..|.-.
T Consensus       469 p~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~---~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrI  542 (776)
T COG5167         469 PEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDL---KDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRI  542 (776)
T ss_pred             hhhceeecCCcceEEecCCCcccceeeecccceeeeEeec---CCcc--eeecCCchhHHhcCccceE-EeecccceEEe
Confidence            334444444555554 455566777789999999988873   5443  5677772       12333 34445556555


Q ss_pred             eccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce------ecceEEEeeCCCeEEEecCCCCCCCCCC
Q 022590          128 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW------LGDFILSKSVDNEIVLWEPKMKEQSPGE  201 (294)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~l~~~~~d~~i~iwd~~~~~~~~~~  201 (294)
                      |.+-...                       ...........+.-.|      ...++++++..|-|++||--...     
T Consensus       543 DPR~~gN-----------------------Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r-----  594 (776)
T COG5167         543 DPRARGN-----------------------KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR-----  594 (776)
T ss_pred             cccccCC-----------------------ceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcch-----
Confidence            6664210                       0011111222222222      26799999999999999964322     


Q ss_pred             CCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          202 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                          ....++.-...|..+..+.+|+  ++++.+ ...+.+-|++
T Consensus       595 ----AKtalP~lG~aIk~idvta~Gk--~ilaTC-k~yllL~d~~  632 (776)
T COG5167         595 ----AKTALPGLGDAIKHIDVTANGK--HILATC-KNYLLLTDVP  632 (776)
T ss_pred             ----hhhcCcccccceeeeEeecCCc--EEEEee-cceEEEEecc
Confidence                2333455566788888888885  444333 4567777764

>PRK13684 Ycf48-like protein; Provisional

Probab=94.12  E-value=2.3  Score=33.53  Aligned_cols=110  Identities=10%  Similarity=0.060  Sum_probs=59.6

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEE-EEcCCcccccee-cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRV-IDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i-w~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      ...++++.+.  |++. +++++ ..|.+.. ++ ..++.-... ..-...++++.+.+ ++..++.+ ..|.+++=..+.
T Consensus       172 ~g~~~~i~~~--~~g~-~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~  244 (334)
T PRK13684        172 AGVVRNLRRS--PDGK-YVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDD  244 (334)
T ss_pred             cceEEEEEEC--CCCe-EEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCC
Confidence            4567788775  7775 55444 4565543 22 222211112 22346789999999 77666654 557765433444


Q ss_pred             CceEEEeecc-CCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590           86 GICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  126 (294)
Q Consensus        86 ~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~  126 (294)
                      +..-...... ......+.++.+.| ++..+ .++.+|.+..
T Consensus       245 G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~-~~G~~G~v~~  284 (334)
T PRK13684        245 LESWSKPIIPEITNGYGYLDLAYRT-PGEIW-AGGGNGTLLV  284 (334)
T ss_pred             CCccccccCCccccccceeeEEEcC-CCCEE-EEcCCCeEEE
Confidence            4443322211 01223578899988 66644 4555675553

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.10  E-value=2  Score=32.79  Aligned_cols=239  Identities=12%  Similarity=0.087  Sum_probs=123.9

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCC------c-cccceecc-----cCcceEEEEeCCCC-----------Cce
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSN------E-KLHKSFVG-----HGDSINEIRTQPLK-----------PSL   68 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~------~-~~~~~~~~-----h~~~v~~~~~~~~~-----------~~~   68 (294)
                      +.|+++  |.+. +-++....+...+||...      . .++-++..     .....+.+.|+...           ...
T Consensus        26 WGia~~--p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        26 WGLSYR--PGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ceeEec--CCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            456665  8886 777777788999999861      1 12222321     23457888887521           123


Q ss_pred             EEEeeCCCcEEEEEcCCCce-----EEEeeccCCCCCce-eEEEEecC-CCceE-EeeecCCcEEEEeccccccccccce
Q 022590           69 VVSASKDESVRLWNVQTGIC-----ILIFAGAGGHRNEV-LSVDFHPS-DIYRI-ASCGMDNTVKIWSMKEFWTYVEKSF  140 (294)
Q Consensus        69 l~s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~~v-~~l~~~~~-~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~  140 (294)
                      ++.+++||+|.-|...-+..     ...+..  .....| ..+++.+. .+.+| ++=-..++|.|+|-.-........+
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~--s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDA--SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEcc--CCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence            67789999999998643322     122221  122333 34555432 23444 4445688999998665322222222


Q ss_pred             eecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec--CCCC
Q 022590          141 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECD  216 (294)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~  216 (294)
                      .....+..+..-.    +..+.+ .-.|+-..-+  ...=+.+..-|.|.+||+...          .++++..  .-..
T Consensus       181 ~DP~iPagyAPFn----Iqnig~-~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~----------l~~r~as~g~LNa  245 (336)
T TIGR03118       181 IDPALPAGYAPFN----VQNLGG-TLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ----------LLRRVASSGRLNA  245 (336)
T ss_pred             cCCCCCCCCCCcc----eEEECC-eEEEEEEecCCcccccccCCCcceEEEEcCCCc----------EEEEeccCCcccC
Confidence            2222222211111    111000 0000000001  122233445578999998643          4444432  2245


Q ss_pred             eeEEEEcccC----CcceEEEEcCCCeEEEEeccCCCceeeeeccc----cccCCCeEEEEEcc
Q 022590          217 IWFIKFSCDF----HYNAAAIGNREGKIFVWELQSSPPVLIARLSH----AQSKSPIRQTAMSY  272 (294)
Q Consensus       217 i~~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~v~~~~~s~  272 (294)
                      .+.|+..|..    .+.+|+---.||+|..||..+++.+  -.+..    .--...++.++|..
T Consensus       246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~--g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL--GQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee--eeecCCCCCeEEecCeEEeeeCC
Confidence            6677776642    1256777678999999999887632  22221    11123467888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.04  E-value=2.8  Score=38.57  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=30.6

Q ss_pred             ccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          260 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       260 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+..+|..++.....+.|.+-++.|.|.+|++..
T Consensus       240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence            5567999999999999999999999999999864

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.01  E-value=2.5  Score=33.61  Aligned_cols=107  Identities=17%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCC-CCCceEEEee----------------------CCC
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP-LKPSLVVSAS----------------------KDE   76 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~----------------------~dg   76 (294)
                      |+++ .++-......|+-.|+++.+....+......+-...|.. .++.+++-.-                      ...
T Consensus        90 ~~~~-~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~  168 (386)
T PF14583_consen   90 PDDR-ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHC  168 (386)
T ss_dssp             TTSS-EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---E
T ss_pred             cCCC-eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCc
Confidence            6666 555444556788889988877666666666665566642 2444443321                      112


Q ss_pred             cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec---CCc-EEEEeccc
Q 022590           77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---DNT-VKIWSMKE  131 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~---dg~-i~~wd~~~  131 (294)
                      .|.-.|+.+|+....+.    -...+..+.|+|.++.+|+-|-+   +.. -|||-++.
T Consensus       169 ~i~~idl~tG~~~~v~~----~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  169 RIFTIDLKTGERKVVFE----DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             EEEEEETTT--EEEEEE----ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET
T ss_pred             eEEEEECCCCceeEEEe----cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc
Confidence            35556777877666665    56678899999988887777643   222 36776665

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=93.75  E-value=2.8  Score=33.23  Aligned_cols=42  Identities=14%  Similarity=0.201  Sum_probs=23.4

Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                      .+.+||..+.+......++..    .-...+..-++++++.|+.+.
T Consensus       291 ~~e~yd~~~~~W~~~~~lp~~----~~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKLPQG----LAYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             EeeEEEecCCcccccCCCCCC----ceeeEEEEcCCEEEEEeccCC
Confidence            467888887764433333211    112223345778888887653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=93.36  E-value=0.58  Score=39.71  Aligned_cols=69  Identities=19%  Similarity=0.400  Sum_probs=42.3

Q ss_pred             EEEEeecCCeEEEEEcCC----cccc-----------ceecc-----------cCcceEEEEeCC---CCCceEEEeeCC
Q 022590           25 FLVAGGINGIIRVIDVSN----EKLH-----------KSFVG-----------HGDSINEIRTQP---LKPSLVVSASKD   75 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~----~~~~-----------~~~~~-----------h~~~v~~~~~~~---~~~~~l~s~~~d   75 (294)
                      .++.+..||.+.......    +...           +.+.+           ....+..++.++   .+..+|++.+.|
T Consensus       160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D  239 (547)
T PF11715_consen  160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD  239 (547)
T ss_dssp             BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred             EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence            688888898888877654    1110           01110           122344455544   256789999999


Q ss_pred             CcEEEEEcCCCceEEEee
Q 022590           76 ESVRLWNVQTGICILIFA   93 (294)
Q Consensus        76 g~i~vwd~~~~~~~~~~~   93 (294)
                      +++|+||+.+++++....
T Consensus       240 ~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  240 HTLRIWSLETGQCLATID  257 (547)
T ss_dssp             SEEEEEETTTTCEEEEEE
T ss_pred             CeEEEEECCCCeEEEEec
Confidence            999999999999976654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=93.32  E-value=4  Score=33.67  Aligned_cols=143  Identities=15%  Similarity=0.175  Sum_probs=82.1

Q ss_pred             CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC-------CCceEEEeeCCCcEEEEEcCC-CceEEEe
Q 022590           21 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-------KPSLVVSASKDESVRLWNVQT-GICILIF   92 (294)
Q Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-------~~~~l~s~~~dg~i~vwd~~~-~~~~~~~   92 (294)
                      +..-++..|.....++-.|++-|+.+..+..|...  -+.|.|.       +.+.|+ |-.+..|.-.|.+- |..+...
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~  554 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV  554 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence            33424455666677888888889999988877665  5677773       123344 44445554456543 3222222


Q ss_pred             eccCCCCCceeEEEEec---CCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCcee
Q 022590           93 AGAGGHRNEVLSVDFHP---SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  169 (294)
Q Consensus        93 ~~~~~~~~~v~~l~~~~---~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (294)
                      .    ....++.-.|+.   ....++|+++..|-|++||--.                       ......+.+-...|.
T Consensus       555 e----sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig-----------------------~rAKtalP~lG~aIk  607 (776)
T COG5167         555 E----SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIG-----------------------KRAKTALPGLGDAIK  607 (776)
T ss_pred             e----ehhccccccccccccccCceEEEecCCCceeeehhhc-----------------------chhhhcCccccccee
Confidence            2    222233333322   1456799999999999999654                       222233444445555


Q ss_pred             eccee--cceEEEeeCCCeEEEecCCC
Q 022590          170 CNRWL--GDFILSKSVDNEIVLWEPKM  194 (294)
Q Consensus       170 ~~~~~--~~~l~~~~~d~~i~iwd~~~  194 (294)
                      .+...  |.++++.+ ...+.+-|++-
T Consensus       608 ~idvta~Gk~ilaTC-k~yllL~d~~i  633 (776)
T COG5167         608 HIDVTANGKHILATC-KNYLLLTDVPI  633 (776)
T ss_pred             eeEeecCCcEEEEee-cceEEEEeccc
Confidence            55543  66666544 45677777754

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=93.23  E-value=1.3  Score=31.09  Aligned_cols=33  Identities=15%  Similarity=0.262  Sum_probs=26.7

Q ss_pred             CCceeEEEEecC-----CCceEEeeecCCcEEEEeccc
Q 022590           99 RNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        99 ~~~v~~l~~~~~-----~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      ...+..++|+|.     .+-+|++...++.|.+|....
T Consensus        85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            347999999993     246789999999999998765

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.20  E-value=4.7  Score=34.15  Aligned_cols=201  Identities=9%  Similarity=-0.003  Sum_probs=104.2

Q ss_pred             ceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC-Cce-------eEEEEecCCCceEEeeecCCcEEEEecccccccccc
Q 022590           67 SLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NEV-------LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK  138 (294)
Q Consensus        67 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v-------~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  138 (294)
                      ..++.++.++.|.-.|..+|+.+-.+....... ...       ..+++.  + ..++.++.|+.+.-.|.++++..-..
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~-~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--D-GKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--C-CEEEEEcCCCEEEEEECCCCCEEeec
Confidence            466777778899999999999888765311000 010       112232  2 35677788999999999886543322


Q ss_pred             ceeecCCCCCCCCceeeeceEEeecCCCceee-cceecceEEEee------CCCeEEEecCCCCCCCCCCCCceee----
Q 022590          139 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWLGDFILSKS------VDNEIVLWEPKMKEQSPGEGTADIL----  207 (294)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~----  207 (294)
                      ......                   ....+.+ -...++.++++.      .+|.|.-+|.++++..........-    
T Consensus       147 ~~~~~~-------------------~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~  207 (527)
T TIGR03075       147 KNGDYK-------------------AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYL  207 (527)
T ss_pred             cccccc-------------------ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccc
Confidence            210000                   0000110 011134455543      2678888888888653221111000    


Q ss_pred             --------e----------eeecCCCCe-eEEEEcccCCcceEEEEcCC-----C-----------eEEEEeccCCCcee
Q 022590          208 --------Q----------KYPVPECDI-WFIKFSCDFHYNAAAIGNRE-----G-----------KIFVWELQSSPPVL  252 (294)
Q Consensus       208 --------~----------~~~~~~~~i-~~~~~~~~~~~~~l~~~~~d-----g-----------~i~i~d~~~~~~~~  252 (294)
                              .          ........+ ..+++.+..  .+++.+..+     +           .|.-.|+++++.+.
T Consensus       208 ~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~--~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W  285 (527)
T TIGR03075       208 DKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET--NLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKW  285 (527)
T ss_pred             cccccccccccccCCCCCCccccCCCCccCceeEcCCC--CeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEE
Confidence                    0          000001111 123444444  345544421     2           57777888887665


Q ss_pred             eeeccccccC-------CCeEEEEEccCCC---EEEEeccCCcEEEEecCC
Q 022590          253 IARLSHAQSK-------SPIRQTAMSYDGS---TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       253 ~~~~~~~~~~-------~~v~~~~~s~~~~---~l~s~~~dg~i~vw~~~~  293 (294)
                      .....  .|.       .+..-+.+..+|+   .++.+..+|.+++.|.++
T Consensus       286 ~~Q~~--~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~t  334 (527)
T TIGR03075       286 HYQTT--PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTN  334 (527)
T ss_pred             eeeCC--CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCC
Confidence            55443  221       1112233334665   788999999999999764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.00  E-value=3.6  Score=32.26  Aligned_cols=64  Identities=11%  Similarity=0.024  Sum_probs=31.1

Q ss_pred             CCceEEEeeCCC-----cEEEEEcCCCce---EEEeeccCCCCCceeEEEEecCCCceEEeeecC-----CcEEEEeccc
Q 022590           65 KPSLVVSASKDE-----SVRLWNVQTGIC---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKE  131 (294)
Q Consensus        65 ~~~~l~s~~~dg-----~i~vwd~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-----g~i~~wd~~~  131 (294)
                      ++.+++.|+.++     .+..+|+.+.+.   ...+..+ .....-.+++..  ++.+++.|+..     ..+..||+.+
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~l-p~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~  148 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNL-PFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLET  148 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCC-CcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCC
Confidence            446777777543     456667766543   1222211 011111222332  56667777642     3466777665

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.87  E-value=3.1  Score=31.27  Aligned_cols=156  Identities=13%  Similarity=0.065  Sum_probs=0.0

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE-EcCCCce
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW-NVQTGIC   88 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw-d~~~~~~   88 (294)
                      .+.+.+++  ++|+.+.+....++.-.||-...+.....+. ....++.-.|++ ++...+....+...+++ +...+..
T Consensus        25 ~~~s~AvS--~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVS--PDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEEC--CCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeee---cCCcEEEEeccccccccccceeecCCCCCCC-CceeeeceEEeecC
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP-TKYVQFPVFIASVH  164 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  164 (294)
                      ...--....-...|..+.++| ++..++...   .++.|.+=-+..               .... ......+.......
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r---------------~~~g~~~~l~~~~~~~~~~  164 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVR---------------DGDGVPRRLTGPRRVAPPL  164 (253)
T ss_pred             eeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEe---------------CCCCCcceeccceEecccc


Q ss_pred             CCceeeccee-cceEEEeeCCC
Q 022590          165 SNYVDCNRWL-GDFILSKSVDN  185 (294)
Q Consensus       165 ~~~i~~~~~~-~~~l~~~~~d~  185 (294)
                      ...+..+.|. +..|++.....
T Consensus       165 ~~~v~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  165 LSDVTDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             cCcceeeeecCCCEEEEEeCCC

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.63  E-value=3.7  Score=31.46  Aligned_cols=214  Identities=14%  Similarity=0.144  Sum_probs=111.3

Q ss_pred             ceEEEEeCCCCCceEEEeeCCCcEEEEEcC------CCce-EEEeeccCC--CCCceeEEEEecCC-----------Cce
Q 022590           55 SINEIRTQPLKPSLVVSASKDESVRLWNVQ------TGIC-ILIFAGAGG--HRNEVLSVDFHPSD-----------IYR  114 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~------~~~~-~~~~~~~~~--~~~~v~~l~~~~~~-----------~~~  114 (294)
                      .-+.|+++| .+.+.++....+...+||..      ..+. +..+....+  .....+.+.|+...           ...
T Consensus        24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            347899999 77888888888999999986      2222 222221111  23467888887521           123


Q ss_pred             EEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC-CCce-eeccee----cceEEEe-eCCCeE
Q 022590          115 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYV-DCNRWL----GDFILSK-SVDNEI  187 (294)
Q Consensus       115 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i-~~~~~~----~~~l~~~-~~d~~i  187 (294)
                      ++.+++||+|.-|...-....+..                  ........ ...| ..++.-    +++|..+ -..++|
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~------------------~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~I  164 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTR------------------AEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRI  164 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccc------------------cEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCce
Confidence            677789999999985432110000                  00111100 1111 122221    3444443 457889


Q ss_pred             EEecCCCCCCCCCCC--Cceee-----eeeecCCCC--eeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc
Q 022590          188 VLWEPKMKEQSPGEG--TADIL-----QKYPVPECD--IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH  258 (294)
Q Consensus       188 ~iwd~~~~~~~~~~~--~~~~~-----~~~~~~~~~--i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  258 (294)
                      .+||-.-........  ...+.     ..+..-.+.  |+...-.++.  ..=+.|..-|.|-+||+...   .+.++..
T Consensus       165 DVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~--~d~v~G~G~G~VdvFd~~G~---l~~r~as  239 (336)
T TIGR03118       165 DVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR--NDEVAGAGLGYVNVFTLNGQ---LLRRVAS  239 (336)
T ss_pred             EEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc--cccccCCCcceEEEEcCCCc---EEEEecc
Confidence            888865332110000  00000     000000011  1111111222  12234555688999998775   5555654


Q ss_pred             cccCCCeEEEEEcc------CCCEEEEeccCCcEEEEecC
Q 022590          259 AQSKSPIRQTAMSY------DGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       259 ~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .+.-..-..|+..|      .|.+|+---.||+|..||..
T Consensus       240 ~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~  279 (336)
T TIGR03118       240 SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQ  279 (336)
T ss_pred             CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCC
Confidence            45555667788866      46677766679999999965

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.58  E-value=4.8  Score=32.64  Aligned_cols=173  Identities=11%  Similarity=0.094  Sum_probs=74.9

Q ss_pred             cCCCceEEEEeec------CCeEEEEEcCCccccceecccC---cceEEEEeCCCCCceEEEee----------------
Q 022590           19 NVDGIPFLVAGGI------NGIIRVIDVSNEKLHKSFVGHG---DSINEIRTQPLKPSLVVSAS----------------   73 (294)
Q Consensus        19 ~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~----------------   73 (294)
                      -|+|+ +++++-.      -|-+.++|-++.+.........   .--..+-|.| ..+.++|..                
T Consensus       138 lp~G~-imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~  215 (461)
T PF05694_consen  138 LPDGR-IMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDL  215 (461)
T ss_dssp             -SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTH
T ss_pred             cCCcc-EEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHh
Confidence            37887 6666432      2567888877766665554322   2235566777 556666642                


Q ss_pred             ----CCCcEEEEEcCCCceEEEeeccCCCC-CceeEEEEec--CCCceEEeeecCCcEEEEec-cccccccccceeecCC
Q 022590           74 ----KDESVRLWNVQTGICILIFAGAGGHR-NEVLSVDFHP--SDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTWTDL  145 (294)
Q Consensus        74 ----~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~l~~~~--~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~~~~  145 (294)
                          ...++.+||+.+.+.++.+..  +.. ..+..+.|..  ....-++.+...++|..|-- ..+.-..+..++....
T Consensus       216 ~~~~yG~~l~vWD~~~r~~~Q~idL--g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~  293 (461)
T PF05694_consen  216 EAGKYGHSLHVWDWSTRKLLQTIDL--GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAK  293 (461)
T ss_dssp             HHH-S--EEEEEETTTTEEEEEEES---TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--E
T ss_pred             hcccccCeEEEEECCCCcEeeEEec--CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCc
Confidence                345799999999999999875  222 3466777765  22334555555556655544 3222222222221110


Q ss_pred             CCCCCCceeeeceEEeecCCCceeeccee--cceEEEee-CCCeEEEecCCCCCC
Q 022590          146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQ  197 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~  197 (294)
                      +..  .-.....+..+..-+.-|+.+..+  .++|..+. ..|.|+.||+.....
T Consensus       294 ~v~--~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  294 KVE--GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             E----SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred             ccC--cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence            000  000000000011113345555554  56665544 689999999988754

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=92.42  E-value=4.1  Score=33.40  Aligned_cols=29  Identities=10%  Similarity=0.111  Sum_probs=21.7

Q ss_pred             Cceeeccee--cceEEEeeCCCeEEEecCCC
Q 022590          166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKM  194 (294)
Q Consensus       166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~  194 (294)
                      ..|.++..+  .+.+++...+|.|.+|++..
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            347777776  67899999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.03  E-value=0.85  Score=22.77  Aligned_cols=29  Identities=21%  Similarity=0.248  Sum_probs=21.8

Q ss_pred             CCc-eEEEeeCCCcEEEEEcCCCceEEEee
Q 022590           65 KPS-LVVSASKDESVRLWNVQTGICILIFA   93 (294)
Q Consensus        65 ~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~   93 (294)
                      +++ ++++...+++|.++|..+++.+..+.
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~   31 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIP   31 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            344 45555568899999999888888776

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=91.73  E-value=5.3  Score=31.32  Aligned_cols=100  Identities=8%  Similarity=0.015  Sum_probs=45.2

Q ss_pred             ecceEEEeeC-----CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC----eEEEEe
Q 022590          174 LGDFILSKSV-----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG----KIFVWE  244 (294)
Q Consensus       174 ~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg----~i~i~d  244 (294)
                      .+.+.+.|+.     ...+..||+.+.+-       ..+..++.. ......+...++  .+.+.|+.++    .+..||
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W-------~~~~~~p~~-~r~~~~~~~~~~--~iYv~GG~~~~~~~~~~~yd  192 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEW-------FELPDFPGE-PRVQPVCVKLQN--ELYVFGGGSNIAYTDGYKYS  192 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCe-------eECCCCCCC-CCCcceEEEECC--EEEEEcCCCCccccceEEEe
Confidence            3556666654     24578888876531       122111111 111122223344  4566666553    356888


Q ss_pred             ccCCCceeeeeccccccCCCe-EEE-EEccCCCEEEEeccC
Q 022590          245 LQSSPPVLIARLSHAQSKSPI-RQT-AMSYDGSTILSCCED  283 (294)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v-~~~-~~s~~~~~l~s~~~d  283 (294)
                      ..+.+................ ... +...++++++.|+.+
T Consensus       193 ~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       193 PKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             cCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            887754333221100000000 111 122356788888866

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.48  E-value=7.3  Score=32.37  Aligned_cols=76  Identities=11%  Similarity=0.135  Sum_probs=48.1

Q ss_pred             CeeEEEEcccCCcceEEEEcCCCeEEEEe---------ccCCCceeeeecc-------ccccCCCeEEEEEccCC---CE
Q 022590          216 DIWFIKFSCDFHYNAAAIGNREGKIFVWE---------LQSSPPVLIARLS-------HAQSKSPIRQTAMSYDG---ST  276 (294)
Q Consensus       216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d---------~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~---~~  276 (294)
                      .|..+..++.|  ..++-.+.+|.+.++=         ++.+++....+..       .....-.+..++|+|+.   ..
T Consensus       105 eV~~vl~s~~G--S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTG--SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCC--ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            46677888888  4677777788655443         1233332222211       01122357788999975   67


Q ss_pred             EEEeccCCcEEEEecCC
Q 022590          277 ILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       277 l~s~~~dg~i~vw~~~~  293 (294)
                      |..-+.|..|++||+..
T Consensus       183 L~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             EEEEecCcEEEEEecCC
Confidence            88888899999999864

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=91.35  E-value=10  Score=33.86  Aligned_cols=71  Identities=17%  Similarity=0.033  Sum_probs=47.6

Q ss_pred             CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee-----------ecccc----ccCCCeEEEEEccCCCEEEE
Q 022590          215 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-----------RLSHA----QSKSPIRQTAMSYDGSTILS  279 (294)
Q Consensus       215 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~~~~~----~~~~~v~~~~~s~~~~~l~s  279 (294)
                      ..|.++....-+  .+++....||.|.++|-.+.+.....           .+...    ....++..++|||.+.-++.
T Consensus       260 ~~V~si~~~~~~--~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~  337 (753)
T PF11635_consen  260 KRVVSITSPELD--IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ  337 (753)
T ss_pred             CeEEEEEecccC--cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence            445556555555  58899999999999998776433222           00000    11124556899999999999


Q ss_pred             eccCCcEE
Q 022590          280 CCEDGAIW  287 (294)
Q Consensus       280 ~~~dg~i~  287 (294)
                      -..+|.+.
T Consensus       338 ~~~~~~~~  345 (753)
T PF11635_consen  338 IDEDGKTK  345 (753)
T ss_pred             EecCCCce
Confidence            99998855

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=91.17  E-value=1.6  Score=37.20  Aligned_cols=65  Identities=15%  Similarity=0.224  Sum_probs=38.1

Q ss_pred             ceEEEEcCCCeEEEEeccC---CCceeeee-ccc------------------cccCCCeEEEEEcc----CCCEEEEecc
Q 022590          229 NAAAIGNREGKIFVWELQS---SPPVLIAR-LSH------------------AQSKSPIRQTAMSY----DGSTILSCCE  282 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~---~~~~~~~~-~~~------------------~~~~~~v~~~~~s~----~~~~l~s~~~  282 (294)
                      ..++.+..||.+.......   ........ ...                  .........+++++    +..+|++.+.
T Consensus       159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~  238 (547)
T PF11715_consen  159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR  238 (547)
T ss_dssp             SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred             CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence            4677788888888888765   11111111 100                  01124466677777    7789999999


Q ss_pred             CCcEEEEecCC
Q 022590          283 DGAIWRWDAIP  293 (294)
Q Consensus       283 dg~i~vw~~~~  293 (294)
                      |+.+|+||+++
T Consensus       239 D~~LRiW~l~t  249 (547)
T PF11715_consen  239 DHTLRIWSLET  249 (547)
T ss_dssp             TSEEEEEETTT
T ss_pred             CCeEEEEECCC
Confidence            99999999975

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.14  E-value=0.062  Score=43.07  Aligned_cols=103  Identities=18%  Similarity=0.290  Sum_probs=70.7

Q ss_pred             EEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590           13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL   90 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~   90 (294)
                      .++|.  .+|...++.+-..+.+.+|++.+....+.-.  .|....  +.|++ ....++.+...|.+.|++..+.+.+.
T Consensus        79 dm~wD--kegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~ii  153 (615)
T KOG2247|consen   79 DMAWD--KEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRII  153 (615)
T ss_pred             hhhhc--cccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--Hhhcc-CCccccccccccceEEEeccchhhhh
Confidence            45565  5676567777888999999987653322111  133322  78999 88888999999999999987776554


Q ss_pred             EeeccCCCCCceeEEEEecCCCceEEeeecCCcEE
Q 022590           91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK  125 (294)
Q Consensus        91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~  125 (294)
                      ..-   .|...++++++.+ .+. .+.++.|..+.
T Consensus       154 v~G---kh~RRgtq~av~l-Ed~-vil~dcd~~L~  183 (615)
T KOG2247|consen  154 VMG---KHQRRGTQIAVTL-EDY-VILCDCDNTLS  183 (615)
T ss_pred             hhc---ccccceeEEEecc-cce-eeecCcHHHHH
Confidence            443   3899999999998 544 55555554443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=90.97  E-value=7.8  Score=31.80  Aligned_cols=30  Identities=27%  Similarity=0.349  Sum_probs=24.9

Q ss_pred             CCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          263 SPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       263 ~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ..|.+++..+..+.|++.+.+|.|.+|++.
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            349999999999999999999999999985

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PLN02153 epithiospecifier protein

Probab=90.72  E-value=7.1  Score=30.91  Aligned_cols=43  Identities=9%  Similarity=0.040  Sum_probs=21.5

Q ss_pred             CeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEecc
Q 022590          238 GKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                      ..+.+||..+.+........ ..........  ...++++++.|+.
T Consensus       217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~--~~~~~~iyv~GG~  260 (341)
T PLN02153        217 NAVQFFDPASGKWTEVETTGAKPSARSVFAH--AVVGKYIIIFGGE  260 (341)
T ss_pred             CceEEEEcCCCcEEeccccCCCCCCcceeee--EEECCEEEEECcc
Confidence            46889998887644332211 0011111122  2235677777775

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.27  E-value=8.9  Score=31.32  Aligned_cols=72  Identities=14%  Similarity=0.108  Sum_probs=43.2

Q ss_pred             ceEEEEeCCCCCceEEEe-eCCC----cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceE-EeeecC-------
Q 022590           55 SINEIRTQPLKPSLVVSA-SKDE----SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMD-------  121 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~-~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~d-------  121 (294)
                      .+....++| +++++|-+ +..|    ++++.|+.+++.+...-    ....-..+.|.+ ++..| .+...+       
T Consensus       125 ~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i----~~~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  125 SLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI----ENPKFSSVSWSD-DGKGFFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE----EEEESEEEEECT-TSSEEEEEECSTTTSS-CC
T ss_pred             EeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc----cccccceEEEeC-CCCEEEEEEeCcccccccC
Confidence            344678999 77766644 4444    49999999997765332    111223499998 54444 443222       


Q ss_pred             ---CcEEEEecccc
Q 022590          122 ---NTVKIWSMKEF  132 (294)
Q Consensus       122 ---g~i~~wd~~~~  132 (294)
                         ..|+.|.+.+.
T Consensus       199 ~~~~~v~~~~~gt~  212 (414)
T PF02897_consen  199 GYPRQVYRHKLGTP  212 (414)
T ss_dssp             GCCEEEEEEETTS-
T ss_pred             CCCcEEEEEECCCC
Confidence               23677777663

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PLN02193 nitrile-specifier protein

Probab=90.25  E-value=9.8  Score=31.78  Aligned_cols=64  Identities=13%  Similarity=0.132  Sum_probs=32.1

Q ss_pred             CCceEEEeeCCC-----cEEEEEcCCCceEEEeeccC--CCCCceeEEEEecCCCceEEeeecCC-----cEEEEeccc
Q 022590           65 KPSLVVSASKDE-----SVRLWNVQTGICILIFAGAG--GHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKE  131 (294)
Q Consensus        65 ~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~~~~~dg-----~i~~wd~~~  131 (294)
                      ++.+++.|+.++     .+..+|+.+.+-.. +....  .....-.++...  ++.+++.|+.++     .+..||+.+
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~-l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t  303 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKL-LTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVD  303 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEE-cCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCC
Confidence            456777777653     57788887654332 22110  011111122222  566777777654     355666655

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.21  E-value=9.7  Score=33.27  Aligned_cols=110  Identities=15%  Similarity=0.175  Sum_probs=62.0

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI   91 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~   91 (294)
                      +..+..-+|.|+ -++.+..||+|++|+.......+... ...+-..+.|.. .  -|+++..|..+.-|.- .|-..+.
T Consensus        16 ~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tn-h--gl~~~tsdrr~la~~~-dgvvqqq   89 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTN-H--GLVTATSDRRALAWKE-DGVVQQQ   89 (1636)
T ss_pred             eeeeeeecCCCc-eEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeec-c--ceEEEeccchhheeec-cCcchhh
Confidence            344445569888 99999999999999986654422222 223444566654 3  3677778888877864 3433333


Q ss_pred             eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEec
Q 022590           92 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM  129 (294)
Q Consensus        92 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~  129 (294)
                      |.-.........++...|...+  ++|..-|-+.-+|.
T Consensus        90 fdyndqsekefss~~cdptaqn--vvgtlcggv~q~dc  125 (1636)
T KOG3616|consen   90 FDYNDQSEKEFSSILCDPTAQN--VVGTLCGGVEQFDC  125 (1636)
T ss_pred             ccccchhhhhccceecCchhhh--hhhhhccceeeehH
Confidence            3211123334556666663333  23333344554543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=90.20  E-value=14  Score=33.39  Aligned_cols=106  Identities=13%  Similarity=0.080  Sum_probs=61.9

Q ss_pred             EEEEeecCCeEEEEEcCCcccccee-cccCcceEEEEeCCC--CCc---eEEEeeCCCcEEEEEcC-CCceEEEeec-cC
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPL--KPS---LVVSASKDESVRLWNVQ-TGICILIFAG-AG   96 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~---~l~s~~~dg~i~vwd~~-~~~~~~~~~~-~~   96 (294)
                      .++.++.++.+...++..+...... +.....|.|+.++|.  +.+   +++.|..+..+.+.-.. ....+..... ..
T Consensus       501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~  580 (1096)
T KOG1897|consen  501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGE  580 (1096)
T ss_pred             EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCC
Confidence            4566666666666666555422111 224568999999974  233   78888887776655433 3333322211 00


Q ss_pred             CCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           97 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        97 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      .-...|.-..+-. +.++|.++..||.+..+-+..
T Consensus       581 ~iPRSIl~~~~e~-d~~yLlvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  581 IIPRSILLTTFEG-DIHYLLVALGDGALLYFVLDI  614 (1096)
T ss_pred             ccchheeeEEeec-cceEEEEEcCCceEEEEEEEc
Confidence            1122344445543 578999999999998877665

>PLN02193 nitrile-specifier protein

Probab=90.06  E-value=10  Score=31.68  Aligned_cols=52  Identities=4%  Similarity=-0.009  Sum_probs=26.3

Q ss_pred             eEEEEcCC----CeEEEEeccCCCceeeeeccc-cccCCCeEEEEEccCCCEEEEeccC
Q 022590          230 AAAIGNRE----GKIFVWELQSSPPVLIARLSH-AQSKSPIRQTAMSYDGSTILSCCED  283 (294)
Q Consensus       230 ~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~d  283 (294)
                      +++.++.+    ..+.+||+.+.+......... ...+....++  .-++++++.|+.+
T Consensus       331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv~GG~~  387 (470)
T PLN02193        331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVIFGGEI  387 (470)
T ss_pred             EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEEECCcc
Confidence            55555544    458899998876443332210 0111111222  3356777777753

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.61  E-value=8.2  Score=29.93  Aligned_cols=230  Identities=13%  Similarity=0.027  Sum_probs=98.2

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-ccccee--ccc---CcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-KLHKSF--VGH---GDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-~~~~~~--~~h---~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      -+.++.+|.|.   +.+.-+++|. .+.|  +...++ +.=...  ...   .-...++.|..  ...+++| ..+ +.+
T Consensus        15 t~~~l~dV~F~---d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll   84 (302)
T PF14870_consen   15 TDKPLLDVAFV---DPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLL   84 (302)
T ss_dssp             -SS-EEEEEES---SSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEE
T ss_pred             CCCceEEEEEe---cCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEE
Confidence            35688889985   3332455554 5543  333333 221111  111   12467788865  3445544 445 334


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ...+.|+.-..+.....-.+....+.... ++..+++ +..|.  +|........-                     ...
T Consensus        85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~-~~~G~--iy~T~DgG~tW---------------------~~~  139 (302)
T PF14870_consen   85 HTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELA-GDRGA--IYRTTDGGKTW---------------------QAV  139 (302)
T ss_dssp             EESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEE-ETT----EEEESSTTSSE---------------------EEE
T ss_pred             EecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEE-cCCCc--EEEeCCCCCCe---------------------eEc
Confidence            45555655544431111223344455444 4443333 33444  33333321110                     001


Q ss_pred             eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ...-...+..+...  +.+++++.......-||.-...       .  ..........+..+.|.|++.  +.+ ....|
T Consensus       140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-------w--~~~~r~~~~riq~~gf~~~~~--lw~-~~~Gg  207 (302)
T PF14870_consen  140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-------W--QPHNRNSSRRIQSMGFSPDGN--LWM-LARGG  207 (302)
T ss_dssp             E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----------EEEE--SSS-EEEEEE-TTS---EEE-EETTT
T ss_pred             ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-------c--eEEccCccceehhceecCCCC--EEE-EeCCc
Confidence            11222444444443  7777777666666778765321       1  112222457899999999973  333 34788


Q ss_pred             eEEEEeccCCCceeee-eccccccCCCeEEEEEccCCCEEEEeccC
Q 022590          239 KIFVWELQSSPPVLIA-RLSHAQSKSPIRQTAMSYDGSTILSCCED  283 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  283 (294)
                      .|++=+.......... ..+.....-.+..++|.+++...|+|+..
T Consensus       208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            8888772221111111 11111223448999999998888776544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=89.33  E-value=7.8  Score=29.31  Aligned_cols=97  Identities=16%  Similarity=0.091  Sum_probs=57.9

Q ss_pred             ecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCC
Q 022590           18 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG   97 (294)
Q Consensus        18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~   97 (294)
                      +.|||. .-+++...|.|--.|..+++....--+....-..|..-| ++..-++-+.. -|.=.|-++.+.. .|.....
T Consensus        69 papdG~-VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt-~f~lp~~  144 (353)
T COG4257          69 PAPDGA-VWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVT-RFPLPLE  144 (353)
T ss_pred             cCCCCc-eEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceE-Eeecccc
Confidence            347776 677777777777777777776554444455566777777 55555543332 3444455454433 2332222


Q ss_pred             C-CCceeEEEEecCCCceEEeee
Q 022590           98 H-RNEVLSVDFHPSDIYRIASCG  119 (294)
Q Consensus        98 ~-~~~v~~l~~~~~~~~~l~~~~  119 (294)
                      | ........|.+ .+++-+++.
T Consensus       145 ~a~~nlet~vfD~-~G~lWFt~q  166 (353)
T COG4257         145 HADANLETAVFDP-WGNLWFTGQ  166 (353)
T ss_pred             cCCCcccceeeCC-CccEEEeec
Confidence            3 35677888888 777777764

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.69  E-value=11  Score=30.23  Aligned_cols=203  Identities=12%  Similarity=0.144  Sum_probs=105.6

Q ss_pred             CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEec----CCCce-EEeee-cC---CcEEEEeccccccc
Q 022590           65 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHP----SDIYR-IASCG-MD---NTVKIWSMKEFWTY  135 (294)
Q Consensus        65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~~~-l~~~~-~d---g~i~~wd~~~~~~~  135 (294)
                      ...+++....++-+.+||+ .|+.+..+..     +.++.+..-.    .+... |+.++ .+   .+|++|.+......
T Consensus        67 ~kSlIigTdK~~GL~VYdL-~Gk~lq~~~~-----Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~  140 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDL-DGKELQSLPV-----GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE  140 (381)
T ss_dssp             GG-EEEEEETTTEEEEEET-TS-EEEEE-S-----S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred             ccceEEEEeCCCCEEEEcC-CCcEEEeecC-----CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence            3457888888888999999 6777766642     3344443321    12221 33333 32   46999988642111


Q ss_pred             cccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-----c-ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeee
Q 022590          136 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-----G-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK  209 (294)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  209 (294)
                      ... +....           .+   +......+..++.-     + -+.++...+|.+..|.+......  ......+++
T Consensus       141 L~~-v~~~~-----------~p---~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g--~v~~~lVR~  203 (381)
T PF02333_consen  141 LTD-VTDPA-----------AP---IATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG--KVSATLVRE  203 (381)
T ss_dssp             EEE--CBTT-----------C----EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS--SEEEEEEEE
T ss_pred             ceE-cCCCC-----------cc---cccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC--cEeeEEEEE
Confidence            100 00000           00   00111223344431     3 36677788898888877532210  012346777


Q ss_pred             eecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc---eeeeeccccccCCCeEEEEEcc--CC-CEEEE-ecc
Q 022590          210 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP---VLIARLSHAQSKSPIRQTAMSY--DG-STILS-CCE  282 (294)
Q Consensus       210 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~v~~~~~s~--~~-~~l~s-~~~  282 (294)
                      +.... .+..|......  ..|+.+-++--|.-|+.+....   ..+...........|..|++-.  ++ .||+. .=.
T Consensus       204 f~~~s-Q~EGCVVDDe~--g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG  280 (381)
T PF02333_consen  204 FKVGS-QPEGCVVDDET--GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG  280 (381)
T ss_dssp             EE-SS--EEEEEEETTT--TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred             ecCCC-cceEEEEeccc--CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence            76643 57777777665  5899999998888888874322   2222222223345677887753  33 35554 446


Q ss_pred             CCcEEEEecCC
Q 022590          283 DGAIWRWDAIP  293 (294)
Q Consensus       283 dg~i~vw~~~~  293 (294)
                      ++...||+.+.
T Consensus       281 ~~sf~Vy~r~~  291 (381)
T PF02333_consen  281 DNSFAVYDREG  291 (381)
T ss_dssp             GTEEEEEESST
T ss_pred             CCeEEEEecCC
Confidence            77899999764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.67  E-value=17  Score=32.45  Aligned_cols=69  Identities=17%  Similarity=0.311  Sum_probs=46.3

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceE-------------EEEeCCC-CCceEEEeeC----------CCcEEE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN-------------EIRTQPL-KPSLVVSASK----------DESVRL   80 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-------------~~~~~~~-~~~~l~s~~~----------dg~i~v   80 (294)
                      .++.++.|+.+.-.|.++|+....+.. .+.|.             .+.-.|. .+..++.|+.          +|.|+-
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A  340 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA  340 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence            688888999999999999998866532 11110             0111110 1235555542          688999


Q ss_pred             EEcCCCceEEEeec
Q 022590           81 WNVQTGICILIFAG   94 (294)
Q Consensus        81 wd~~~~~~~~~~~~   94 (294)
                      +|.++|+.+-.+..
T Consensus       341 ~Da~TGkl~W~~~~  354 (764)
T TIGR03074       341 FDVNTGALVWAWDP  354 (764)
T ss_pred             EECCCCcEeeEEec
Confidence            99999999988863

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>smart00564 PQQ beta-propeller repeat

Probab=88.49  E-value=1.6  Score=20.34  Aligned_cols=25  Identities=20%  Similarity=0.233  Sum_probs=20.7

Q ss_pred             ceEEEeeCCCcEEEEEcCCCceEEE
Q 022590           67 SLVVSASKDESVRLWNVQTGICILI   91 (294)
Q Consensus        67 ~~l~s~~~dg~i~vwd~~~~~~~~~   91 (294)
                      ..++.++.+|.+..+|..+|+.+..
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEE
Confidence            3677888899999999999887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.35  E-value=19  Score=32.51  Aligned_cols=66  Identities=14%  Similarity=0.111  Sum_probs=42.7

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCcccc---ce------e--cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLH---KS------F--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~---~~------~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      .-|+ .+..|+.+|.+.+|.+.+....   ..      +  .-+..+|+.+...+ .-.++. .-.|+.|.++++.+-+.
T Consensus        24 ~~~~-~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~-~~~~ll-~l~dsqi~~~~l~~~~~  100 (877)
T KOG2063|consen   24 AYGN-HLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCA-SLELLL-ILSDSQIAVHKLPELEP  100 (877)
T ss_pred             HhCC-EEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcc-hhcchh-eecCCcceeeecCcccc
Confidence            3465 8999999999999998654211   11      1  11357788887777 333333 34567788888876555

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=88.18  E-value=10  Score=29.22  Aligned_cols=197  Identities=8%  Similarity=-0.031  Sum_probs=87.7

Q ss_pred             cEEEEEcCCCceEEEeeccC---CCCCceeEEEEecCCC-----ceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590           77 SVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSDI-----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~-----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                      .|.+||+.+++.++.+....   ...+.+..+.+....+     ...++=...+-|.|+|+.++.......-.....+..
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            57789999998887776421   1245678888876332     233444445689999999854322221111111110


Q ss_pred             CCCceeeeceEEeecCCCceeeccee-----cceEEEeeCCCeEEEecCC-----CCCCCCCCCCceeeeeeecCCCCee
Q 022590          149 FPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPK-----MKEQSPGEGTADILQKYPVPECDIW  218 (294)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~i~  218 (294)
                      ....   ..-..+.. ...+..++.+     ++.|.-....+. ++|.+.     .............+..+-.......
T Consensus       115 ~~~~---i~g~~~~~-~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~  189 (287)
T PF03022_consen  115 GPFT---IGGESFQW-PDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSD  189 (287)
T ss_dssp             EEEE---ETTEEEEE-TTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SEC
T ss_pred             ccee---ccCceEec-CCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCc
Confidence            0000   00001111 1113333332     233333322221 122221     1111000000011122211123455


Q ss_pred             EEEEcccCCcceEEEEcCCCeEEEEeccCCCce-eeeecccccc-CCCeEEEEEcc--CCCEEEEe
Q 022590          219 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV-LIARLSHAQS-KSPIRQTAMSY--DGSTILSC  280 (294)
Q Consensus       219 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~-~~~v~~~~~s~--~~~~l~s~  280 (294)
                      .+++.++|  .++++--..+.|..|+....-.. ....+..... -..+..+.+.+  +|.+.+..
T Consensus       190 g~~~D~~G--~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  190 GMAIDPNG--NLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEEETTT--EEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             eEEECCCC--cEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            67888877  67778888999999998872110 1111111122 35678899998  77655544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.61  E-value=13  Score=29.83  Aligned_cols=76  Identities=18%  Similarity=0.269  Sum_probs=50.0

Q ss_pred             CCeeEEEEccc--CCcceEEEEcCCCeEEEEeccC-CCc----eeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590          215 CDIWFIKFSCD--FHYNAAAIGNREGKIFVWELQS-SPP----VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW  287 (294)
Q Consensus       215 ~~i~~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~-~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  287 (294)
                      ..++.+++-.+  ....+++....+|.+..|.+.. ++.    ..++++.   -...+..+.......+|..+-++.-|.
T Consensus       156 ~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~---~~sQ~EGCVVDDe~g~LYvgEE~~GIW  232 (381)
T PF02333_consen  156 SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK---VGSQPEGCVVDDETGRLYVGEEDVGIW  232 (381)
T ss_dssp             SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTTTEEEEEETTTEEE
T ss_pred             ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec---CCCcceEEEEecccCCEEEecCccEEE
Confidence            34677776432  2224777788899999998863 221    2333333   235789999998888999998887777


Q ss_pred             EEecCC
Q 022590          288 RWDAIP  293 (294)
Q Consensus       288 vw~~~~  293 (294)
                      -|+.++
T Consensus       233 ~y~Aep  238 (381)
T PF02333_consen  233 RYDAEP  238 (381)
T ss_dssp             EEESSC
T ss_pred             EEecCC
Confidence            777765

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=87.25  E-value=1.8  Score=19.48  Aligned_cols=26  Identities=23%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             cceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590           54 DSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      ..|.+++..+   .+++.+..-+.+|+|.
T Consensus         2 E~i~aia~g~---~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    2 EEIEAIAAGD---SWVAVATSAGYLRIFS   27 (27)
T ss_pred             ceEEEEEccC---CEEEEEeCCCeEEecC
Confidence            4578888866   6888888889999873

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>PRK10115 protease 2; Provisional

Probab=86.63  E-value=22  Score=31.45  Aligned_cols=108  Identities=7%  Similarity=-0.016  Sum_probs=58.1

Q ss_pred             EeecCCCceEEEEee-cC----CeEEEEEcCCccccceecccCcceEEEEeCCCCCc-eEEEeeCC-----CcEEEEEcC
Q 022590           16 WACNVDGIPFLVAGG-IN----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKD-----ESVRLWNVQ   84 (294)
Q Consensus        16 ~~~~~~~~~~l~~~~-~d----g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~d-----g~i~vwd~~   84 (294)
                      |.++|+|+ +|+.+. .+    ..|++.|+.+++.+...-....  ..++|.+ +++ ++++...+     ..|..+++.
T Consensus       132 ~~~Spdg~-~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~h~lg  207 (686)
T PRK10115        132 MAITPDNT-IMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWRHTIG  207 (686)
T ss_pred             EEECCCCC-EEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEEEECC
Confidence            44469999 666543 22    3588999988864332221222  5699999 555 44444322     357778888


Q ss_pred             CC--ceEEEeeccCCCCCceeEEEEecCCCceEEeee---cCCcEEEEecc
Q 022590           85 TG--ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMK  130 (294)
Q Consensus        85 ~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~---~dg~i~~wd~~  130 (294)
                      ++  +-...+..   ......-..+.+.++.+++..+   .++.+.+++..
T Consensus       208 t~~~~d~lv~~e---~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~  255 (686)
T PRK10115        208 TPASQDELVYEE---KDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE  255 (686)
T ss_pred             CChhHCeEEEee---CCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence            77  33344442   2222331223332555444433   34568888854

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=86.55  E-value=2  Score=19.37  Aligned_cols=25  Identities=12%  Similarity=0.158  Sum_probs=18.5

Q ss_pred             eEEEEEccCCCEEEEeccCCcEEEE
Q 022590          265 IRQTAMSYDGSTILSCCEDGAIWRW  289 (294)
Q Consensus       265 v~~~~~s~~~~~l~s~~~dg~i~vw  289 (294)
                      ...++++++|+++++=+....|+++
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4667888888877777777777664

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=86.28  E-value=14  Score=28.76  Aligned_cols=99  Identities=10%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             EEEEeecCCeEEEEEcCC--ccccceecccCcceEEEEeCCCCCceEE-EeeCCCcEEEEEcCCCce-------------
Q 022590           25 FLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQTGIC-------------   88 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~-------------   88 (294)
                      +|+.|+.+|...+ +..+  .+..+.+  +...|+++...+ ..+.|+ -++....++++++..-..             
T Consensus        15 ~lL~GTe~Gly~~-~~~~~~~~~~kl~--~~~~v~q~~v~~-~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~   90 (302)
T smart00036       15 WLLVGTEEGLYVL-NISDQPGTLEKLI--GRRSVTQIWVLE-ENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR   90 (302)
T ss_pred             EEEEEeCCceEEE-EcccCCCCeEEec--CcCceEEEEEEh-hhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence            8999999985554 4544  2333322  467899999998 555444 444445599999843221             


Q ss_pred             ---EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc
Q 022590           89 ---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        89 ---~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~  131 (294)
                         ...+    ++................++++....+|.++....
T Consensus        91 ~~~~~~~----~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~  132 (302)
T smart00036       91 KNVLTKI----PDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYN  132 (302)
T ss_pred             ccceEeC----CcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccC
Confidence               1111    24443444444432233445556667787775543

Unpublished observations.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=85.99  E-value=28  Score=31.94  Aligned_cols=177  Identities=12%  Similarity=0.053  Sum_probs=0.0

Q ss_pred             eEEEEEcCCccccceecccCc----ceEEEEeCCCCCceEEEeeCCCcEEEEEc-------------CCCceEEEeeccC
Q 022590           34 IIRVIDVSNEKLHKSFVGHGD----SINEIRTQPLKPSLVVSASKDESVRLWNV-------------QTGICILIFAGAG   96 (294)
Q Consensus        34 ~i~iw~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~s~~~dg~i~vwd~-------------~~~~~~~~~~~~~   96 (294)
                      .|++.|..+++.+..+....+    .|.++.|+..+...++.++.+.+-.+|..             ..++.+..+.   
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh---  930 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH---  930 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee---


Q ss_pred             CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecc
Q 022590           97 GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD  176 (294)
Q Consensus        97 ~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  176 (294)
                      ...-+-.-.+..|..+..|+..+  ..+++||+...+                     .........-+..|..+++.+.
T Consensus       931 ~T~~~~~v~Ai~~f~~~~LagvG--~~l~~YdlG~K~---------------------lLRk~e~k~~p~~Is~iqt~~~  987 (1205)
T KOG1898|consen  931 KTEIPGPVGAICPFQGRVLAGVG--RFLRLYDLGKKK---------------------LLRKCELKFIPNRISSIQTYGA  987 (1205)
T ss_pred             ccCCCccceEEeccCCEEEEecc--cEEEEeeCChHH---------------------HHhhhhhccCceEEEEEeecce


Q ss_pred             eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          177 FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       177 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      .+++|..--.+.++-.+..       ....+.-...+-.+.....+--|.  ..++.++.=|.+.+..+
T Consensus       988 RI~VgD~qeSV~~~~y~~~-------~n~l~~fadD~~pR~Vt~~~~lD~--~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen  988 RIVVGDIQESVHFVRYRRE-------DNQLIVFADDPVPRHVTALELLDY--DTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred             EEEEeeccceEEEEEEecC-------CCeEEEEeCCCccceeeEEEEecC--CceeeccccCcEEEEEC

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.74  E-value=2.9  Score=20.46  Aligned_cols=29  Identities=17%  Similarity=0.265  Sum_probs=18.2

Q ss_pred             CceeEEEEEeecCCCceEEEEeecC--CeEEEE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGIN--GIIRVI   38 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~d--g~i~iw   38 (294)
                      .+.-....|+  |||+.++.++..+  |.-.||
T Consensus         8 ~~~~~~p~~S--pDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWS--PDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE---TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEe--cCCCEEEEEecCCCCCCcCEE
Confidence            3445566666  9999566666666  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=85.74  E-value=17  Score=29.23  Aligned_cols=102  Identities=10%  Similarity=-0.071  Sum_probs=59.3

Q ss_pred             EEEEeecCCeEEEEEcCCccccceeccc--CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCC-c
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGH--GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN-E  101 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~  101 (294)
                      .+.++..+|.|.-.|.++++.+.....-  ...+..-.+.. +++ ++.++.+|.+..+|..+|+.+.....   ... .
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~---~~~~~  144 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNV---GGSPY  144 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEec---CCCeE
Confidence            4777788898888898888765433221  12222222222 444 77788889888999988998888773   220 1


Q ss_pred             eeEEEEecCCCceEEeeecCCcEEEEeccccc
Q 022590          102 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW  133 (294)
Q Consensus       102 v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~  133 (294)
                      +..-..-  ....+..++.++.+...+..++.
T Consensus       145 ~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~  174 (370)
T COG1520         145 YASPPVV--GDGTVYVGTDDGHLYALNADTGT  174 (370)
T ss_pred             EecCcEE--cCcEEEEecCCCeEEEEEccCCc
Confidence            1111111  12223334466777777776643

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.89  E-value=3.3  Score=20.28  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=22.9

Q ss_pred             eEEEeeCCCcEEEEEcCCCceEEEeec
Q 022590           68 LVVSASKDESVRLWNVQTGICILIFAG   94 (294)
Q Consensus        68 ~l~s~~~dg~i~vwd~~~~~~~~~~~~   94 (294)
                      .++.++.+|.|.-.|.++|+.+-.++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            356669999999999999999988873

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=84.75  E-value=19  Score=28.96  Aligned_cols=157  Identities=10%  Similarity=-0.025  Sum_probs=0.0

Q ss_pred             CceeEEEEecCCCceEEee-----------ecCC-cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590          100 NEVLSVDFHPSDIYRIASC-----------GMDN-TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~-----------~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      .....|+|.+ +++++++-           ...+ .|.+++-.........                   ...+......
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~-------------------~~vfa~~l~~   73 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK-------------------SNVFAEELSM   73 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce-------------------eEEeecCCCC


Q ss_pred             eeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC----CCCeeEEEEcccCCcceEEEEcCC------
Q 022590          168 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP----ECDIWFIKFSCDFHYNAAAIGNRE------  237 (294)
Q Consensus       168 i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~l~~~~~d------  237 (294)
                      ...+.+..+- +-.+....|..+.-..+...........+..+...    ......+.|.|++  .+.++-+..      
T Consensus        74 p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG--~LYv~~G~~~~~~~~  150 (367)
T TIGR02604        74 VTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG--WLYFNHGNTLASKVT  150 (367)
T ss_pred             ccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC--CEEEecccCCCceec


Q ss_pred             -------------CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590          238 -------------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       238 -------------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                                   |.|.-++....+......--..     ...++|+|+|+++++-..++
T Consensus       151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rn-----p~Gl~~d~~G~l~~tdn~~~  205 (367)
T TIGR02604       151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQN-----PYGHSVDSWGDVFFCDNDDP  205 (367)
T ss_pred             cCCCccCcccccCceEEEEecCCCeEEEEecCcCC-----CccceECCCCCEEEEccCCC

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=84.67  E-value=3.4  Score=20.24  Aligned_cols=28  Identities=7%  Similarity=0.251  Sum_probs=22.1

Q ss_pred             eEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590          230 AAAIGNREGKIFVWELQSSPPVLIARLS  257 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~  257 (294)
                      .++.++.+|.++-.|.++++.+......
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            4566699999999999999866666554

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=84.46  E-value=20  Score=28.95  Aligned_cols=40  Identities=13%  Similarity=0.104  Sum_probs=21.1

Q ss_pred             EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590          240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED  283 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  283 (294)
                      +.+||.++.+......++..  ....  .+..-++++++.|+..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~--r~~~--~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQG--LAYG--VSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCCC--ccce--EEEEeCCEEEEEcCCC
Confidence            56788887764333333211  1112  2334467788887753

>KOG3611 consensus Semaphorins [Signal transduction mechanisms]

Probab=84.29  E-value=20  Score=31.80  Aligned_cols=74  Identities=19%  Similarity=0.272  Sum_probs=49.6

Q ss_pred             CCeeEEEEc----ccCCcceEEEEcCCCeEE-EEeccC---CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcE
Q 022590          215 CDIWFIKFS----CDFHYNAAAIGNREGKIF-VWELQS---SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI  286 (294)
Q Consensus       215 ~~i~~~~~~----~~~~~~~l~~~~~dg~i~-i~d~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  286 (294)
                      ...+.++..    .++.+..|+.|+++|+|. +.....   ...+.+..+..-.+..+|..|..++..+.|+.|+..|.+
T Consensus       408 ~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~LyVgs~~gV~  487 (737)
T KOG3611|consen  408 YRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSLYVGSRSGVV  487 (737)
T ss_pred             ceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeEEEEccCcEE
Confidence            445555555    556678899999999865 333333   111133344433445889999999998899999999876


Q ss_pred             EE
Q 022590          287 WR  288 (294)
Q Consensus       287 ~v  288 (294)
                      +|
T Consensus       488 qv  489 (737)
T KOG3611|consen  488 QV  489 (737)
T ss_pred             Ee
Confidence            64

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.22  E-value=36  Score=31.70  Aligned_cols=33  Identities=6%  Similarity=0.229  Sum_probs=26.6

Q ss_pred             cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590           54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      .....++|+| ...+++.++..|.|.++-...-+
T Consensus        36 ~~~~~~afD~-~q~llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   36 STPSALAFDP-TQGLLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCCcceeecc-ccceEEEEEecccEEEecccceE
Confidence            3556788999 77899999999999999764433

>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]

Probab=84.21  E-value=21  Score=28.96  Aligned_cols=65  Identities=8%  Similarity=0.044  Sum_probs=40.7

Q ss_pred             eEEEeeCCCcEEEEEcCCCceEEEeecc-CCCCCceeEEEEecCCCceEEee-------ecCCcEEEEeccccc
Q 022590           68 LVVSASKDESVRLWNVQTGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASC-------GMDNTVKIWSMKEFW  133 (294)
Q Consensus        68 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~-------~~dg~i~~wd~~~~~  133 (294)
                      .+..-+..+.|-+|+..+++....+... ....+.-..+.|.+ ...+++..       ..++.|++||.+...
T Consensus       237 ~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~n-g~~~li~~~~fp~~~kdN~~i~~~d~Rd~n  309 (465)
T KOG2714|consen  237 QLVALSSVGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLN-GSNLLIDSQKFPLRMKDNDLIVTEDFRDRN  309 (465)
T ss_pred             hhhhccccccccccchhhhceeeeeeccCccccCChhhhcccc-CceeEEEEeeccccccCCceEEEeeccCCC
Confidence            3445567788999999888544333321 12334556677887 44444332       357789999999854

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.10  E-value=21  Score=29.04  Aligned_cols=157  Identities=9%  Similarity=-0.044  Sum_probs=0.0

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      .+....+.-.  ++|. +++.+..-..++-||-....-...-......++.+.+.+ ++.+++++..-+.+.--|-....
T Consensus       238 ~Gsf~~v~~~--~dG~-~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g~~G~l~~S~d~G~~~  313 (398)
T PLN00033        238 TGTFSTVNRS--PDGD-YVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRA-DGGLWLLTRGGGLYVSKGTGLTE  313 (398)
T ss_pred             ccceeeEEEc--CCCC-EEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcC-CCCEEEEeCCceEEEecCCCCcc


Q ss_pred             eEEEeeccCCCCCc--eeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           88 CILIFAGAGGHRNE--VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        88 ~~~~~~~~~~~~~~--v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ....+.........  +.++.|.+ ++. ++.++..|.+....-....                     -........-.
T Consensus       314 ~~~~f~~~~~~~~~~~l~~v~~~~-d~~-~~a~G~~G~v~~s~D~G~t---------------------W~~~~~~~~~~  370 (398)
T PLN00033        314 EDFDFEEADIKSRGFGILDVGYRS-KKE-AWAAGGSGILLRSTDGGKS---------------------WKRDKGADNIA  370 (398)
T ss_pred             cccceeecccCCCCcceEEEEEcC-CCc-EEEEECCCcEEEeCCCCcc---------------------eeEccccCCCC


Q ss_pred             Cceeeccee-cceEEEeeCCCeEEEec
Q 022590          166 NYVDCNRWL-GDFILSKSVDNEIVLWE  191 (294)
Q Consensus       166 ~~i~~~~~~-~~~l~~~~~d~~i~iwd  191 (294)
                      ..+..+.|. .+.....+.+|.|.-|.
T Consensus       371 ~~ly~v~f~~~~~g~~~G~~G~il~~~  397 (398)
T PLN00033        371 ANLYSVKFFDDKKGFVLGNDGVLLRYL  397 (398)
T ss_pred             cceeEEEEcCCCceEEEeCCcEEEEeC

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=84.07  E-value=14  Score=26.80  Aligned_cols=103  Identities=9%  Similarity=-0.066  Sum_probs=58.1

Q ss_pred             CCceEEEeeC--CCcEEEEEcCCCceEEEeecc--CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccce
Q 022590           65 KPSLVVSASK--DESVRLWNVQTGICILIFAGA--GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF  140 (294)
Q Consensus        65 ~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  140 (294)
                      ++.++.+.+.  ...|++||+.+++.+..-...  .-....++.+     +..+.+-.-.+|.-..+|.++.+.....  
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~--  127 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRF--  127 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhccc--
Confidence            4567777654  346999999999877655421  0011112211     2233333456788888888874322111  


Q ss_pred             eecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCC
Q 022590          141 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE  196 (294)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~  196 (294)
                                            ..++.-..++.++..|+.+....+++.-|..+..
T Consensus       128 ----------------------~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa  161 (262)
T COG3823         128 ----------------------SYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFA  161 (262)
T ss_pred             ----------------------ccCCcceeeecCCcceEeeCCceEEEecCHHHhh
Confidence                                  1223334455556667776667778887876554

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.77  E-value=13  Score=26.13  Aligned_cols=29  Identities=17%  Similarity=0.221  Sum_probs=24.5

Q ss_pred             CCeEEEEEccCC------CEEEEeccCCcEEEEec
Q 022590          263 SPIRQTAMSYDG------STILSCCEDGAIWRWDA  291 (294)
Q Consensus       263 ~~v~~~~~s~~~------~~l~s~~~dg~i~vw~~  291 (294)
                      ..+.+++|||.|      .+|++.+.+|.|.||.-
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~  120 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP  120 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence            379999999954      47889999999999964

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.51  E-value=25  Score=29.45  Aligned_cols=31  Identities=23%  Similarity=0.139  Sum_probs=22.4

Q ss_pred             CCceeEEEEecCCCceEEeeecCCcEEEEecc
Q 022590           99 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK  130 (294)
Q Consensus        99 ~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~  130 (294)
                      .-.|..+..++ .|..++-.|.+|.+.++=.+
T Consensus       103 ~feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~  133 (741)
T KOG4460|consen  103 LFEVYQVLLSP-TGSHVALIGIKGLMVMELPK  133 (741)
T ss_pred             eEEEEEEEecC-CCceEEEecCCeeEEEEchh
Confidence            34577788888 77778888888877665433

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=83.47  E-value=34  Score=30.85  Aligned_cols=124  Identities=8%  Similarity=0.122  Sum_probs=72.2

Q ss_pred             cCceeEEEEEe---ecCCCceEEEEeecCCeEEEEEcCCc---------------cccceecc---cCcceEEEEeCCCC
Q 022590            7 KEESFYTVSWA---CNVDGIPFLVAGGINGIIRVIDVSNE---------------KLHKSFVG---HGDSINEIRTQPLK   65 (294)
Q Consensus         7 h~~~v~~~~~~---~~~~~~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~---h~~~v~~~~~~~~~   65 (294)
                      -..+|..|+|+   ...+.....+..-....+.|+...-.               .++..+..   -..+..+++|+|.+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            45788889987   22222212344444557777772111               12222321   23467889999988


Q ss_pred             CceEEEeeCCCcEEEEEcCCCc-----eEEEeeccCCC-------CCceeEEEEecCCCceEEeeecCCcEEEEecccc
Q 022590           66 PSLVVSASKDESVRLWNVQTGI-----CILIFAGAGGH-------RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  132 (294)
Q Consensus        66 ~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~-------~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~  132 (294)
                      ...||.....|.-.||++....     .........++       .+.-..+.|.+ +.+.|+.+.. ..+.++|+...
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r-~~l~~~d~~~~  234 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR-SKLMLIDFESN  234 (765)
T ss_pred             cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-CceEEEECCCC
Confidence            8899999999999999992111     11111110011       12234778877 6566666664 57888998873

These proteins are found in fungi.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=83.43  E-value=3.9  Score=19.99  Aligned_cols=28  Identities=21%  Similarity=0.059  Sum_probs=17.6

Q ss_pred             CCeeEEEEcccCCcceEEEEcCC--CeEEEE
Q 022590          215 CDIWFIKFSCDFHYNAAAIGNRE--GKIFVW  243 (294)
Q Consensus       215 ~~i~~~~~~~~~~~~~l~~~~~d--g~i~i~  243 (294)
                      ..-....|+|+|+ .++.++..+  |.-.||
T Consensus         9 ~~~~~p~~SpDGk-~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    9 GDDGSPAWSPDGK-YIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSEEEEEE-TTSS-EEEEEEECT--SSEEEE
T ss_pred             ccccCEEEecCCC-EEEEEecCCCCCCcCEE
Confidence            3456788999997 455555555  666555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=83.42  E-value=25  Score=29.23  Aligned_cols=157  Identities=15%  Similarity=0.074  Sum_probs=0.0

Q ss_pred             CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecce--
Q 022590          100 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDF--  177 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--  177 (294)
                      ...+.|+|.| ++.+|++--..|.|++++..........                ..+..........+..++++.++  
T Consensus        30 ~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~----------------~l~~v~~~~ge~GLlglal~PdF~~   92 (454)
T TIGR03606        30 NKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVF----------------TLPEIVNDAQHNGLLGLALHPDFMQ   92 (454)
T ss_pred             CCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeee----------------cCCceeccCCCCceeeEEECCCccc


Q ss_pred             ------EEEee----------CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC-----
Q 022590          178 ------ILSKS----------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR-----  236 (294)
Q Consensus       178 ------l~~~~----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-----  236 (294)
                            |....          ....|.-|.+............-....-......-..+.|.|++. .++.+|+.     
T Consensus        93 ~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~  171 (454)
T TIGR03606        93 EKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQG  171 (454)
T ss_pred             cCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCc


Q ss_pred             --------------------------CCeEEEEeccCC-----------CceeeeeccccccCCCeEEEEEccCCCEEEE
Q 022590          237 --------------------------EGKIFVWELQSS-----------PPVLIARLSHAQSKSPIRQTAMSYDGSTILS  279 (294)
Q Consensus       237 --------------------------dg~i~i~d~~~~-----------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s  279 (294)
                                                -|.|.-.+....           .+.....    +|+++. .++|+|+|++.++
T Consensus       172 ~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~----G~RNp~-Gla~dp~G~Lw~~  246 (454)
T TIGR03606       172 ANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY----GHRNPQ-GLAFTPDGTLYAS  246 (454)
T ss_pred             ccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE----eccccc-eeEECCCCCEEEE

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=83.05  E-value=43  Score=31.79  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=17.4

Q ss_pred             ccCCCeEEEEEccCCCEEEEeccCC
Q 022590          260 QSKSPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       260 ~~~~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                      .+-..+.++|.+|||...++-..+-
T Consensus       659 A~lnsp~alaVsPdg~v~IAD~gN~  683 (1899)
T KOG4659|consen  659 AKLNSPYALAVSPDGDVIIADSGNS  683 (1899)
T ss_pred             cccCCcceEEECCCCcEEEecCCch
Confidence            3446778899999998776654443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=82.54  E-value=37  Score=30.62  Aligned_cols=79  Identities=16%  Similarity=0.245  Sum_probs=50.3

Q ss_pred             ccCcceEEEEeC---CC---CCceEEEeeCCCcEEEEEcCCC---------------ceEEEeeccCCCCCceeEEEEec
Q 022590           51 GHGDSINEIRTQ---PL---KPSLVVSASKDESVRLWNVQTG---------------ICILIFAGAGGHRNEVLSVDFHP  109 (294)
Q Consensus        51 ~h~~~v~~~~~~---~~---~~~~l~s~~~dg~i~vwd~~~~---------------~~~~~~~~~~~~~~~v~~l~~~~  109 (294)
                      ....+|..|+|.   ..   ...+|++ -....+.|+...-.               .++..+....--..+..+++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456789999998   21   1234444 44456667762111               22233321111223678899999


Q ss_pred             CCCceEEeeecCCcEEEEecc
Q 022590          110 SDIYRIASCGMDNTVKIWSMK  130 (294)
Q Consensus       110 ~~~~~l~~~~~dg~i~~wd~~  130 (294)
                      .+...||.....|...||++.
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~  176 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIK  176 (765)
T ss_pred             CccceEEEEeccCcEEEEEec
Confidence            888899999999999999993

These proteins are found in fungi.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=82.45  E-value=6.4  Score=23.99  Aligned_cols=51  Identities=16%  Similarity=0.230  Sum_probs=0.0

Q ss_pred             EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe--ccCCcEEEE
Q 022590          234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC--CEDGAIWRW  289 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~vw  289 (294)
                      +..+|.+.-||..+++......--.-     -+.+++++|+.+|+.+  ..-...+.|
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~f-----pNGVals~d~~~vlv~Et~~~Ri~ryw   85 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLYF-----PNGVALSPDESFVLVAETGRYRILRYW   85 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEESS-----EEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCCc-----cCeEEEcCCCCEEEEEeccCceEEEEE

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-62
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		1e-62
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-62
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		1e-62
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		1e-62
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		9e-10
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-09
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-08
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-08
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-08
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-08
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-08
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-08
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-08
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-08
2h9l_A	329	Wdr5delta23 Length = 329		1e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-08
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-08
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-08
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		6e-08
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		6e-08
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-08
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-08
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		8e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		1e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		4e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-07
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		5e-07
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-07
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-06
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-06
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		6e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-05
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		8e-05
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		8e-05
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		9e-05
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		9e-05
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		2e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		6e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		7e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		8e-04

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 23/308 (7%)
Query: 3   YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 62  YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 178
Query: 119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 171
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 179 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 236
Query: 172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 237 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSTDF 296
Query: 227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct: 297 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 356
Query: 285 AIWRWDAI 292
           +IWRWD +
Sbjct: 357 SIWRWDRL 364

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 23/308 (7%)
Query: 3   YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 63  YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 122
Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 179
Query: 119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 171
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 180 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237
Query: 172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 238 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 297
Query: 227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct: 298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 357
Query: 285 AIWRWDAI 292
           +IWRWD +
Sbjct: 358 SIWRWDRL 365

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 23/308 (7%)
Query: 3   YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 62  YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 178
Query: 119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 171
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 179 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 236
Query: 172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 237 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 296
Query: 227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct: 297 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 356
Query: 285 AIWRWDAI 292
           +IWRWD +
Sbjct: 357 SIWRWDRL 364

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 23/308 (7%)
Query: 3   YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 99  YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 158
Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 159 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 215
Query: 119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 171
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 216 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 273
Query: 172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 274 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 333
Query: 227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct: 334 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 393
Query: 285 AIWRWDAI 292
           +IWRWD +
Sbjct: 394 SIWRWDRL 401

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score =  236 bits (601), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/308 (40%), Positives = 190/308 (61%), Gaps = 23/308 (7%)
Query: 3   YVD-QKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           YVD   +E+FYT +W  + +   P L   G  GIIR+I+    +  K +VGHG++INE++
Sbjct: 58  YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 117
Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY--RIASC 118
             P  P+L++S SKD ++RLWN+QT   + IF G  GHR+EVLS D+   D+   +I SC
Sbjct: 118 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY---DLLGEKIMSC 174
Query: 119 GMDNTVKIWSM--KEFWTYVEKSFTWTDLPSK----FPTKYVQFPVF-IASVHSNYVDCN 171
           GMD+++K+W +  K     +++S+ +   P+K    F ++ + FP F    +H NYVDC 
Sbjct: 175 GMDHSLKLWRINSKRMMNAIKESYDYN--PNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 232
Query: 172 RWLGDFILSKSVDNEIVLWEP-KMKEQ----SPGEGTADILQKYPVPECDIWFIKFSCDF 226
           RWLGD ILSKS +N IV W+P KM++      P E    IL ++   +CDIW+++FS DF
Sbjct: 233 RWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF 292
Query: 227 HYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG 284
                A+GN+ GK++VW+L+   P       L+H +  + IRQT+ S D S +++ C+D 
Sbjct: 293 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDA 352
Query: 285 AIWRWDAI 292
           +IWRWD +
Sbjct: 353 SIWRWDRL 360

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 42/249 (16%)
Query: 67  SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 126
           +  VSAS D S+RLWN+Q G C   F    GH  +VLSV F P D  +I S G DN +++
Sbjct: 80  NFAVSASWDHSLRLWNLQNGQCQYKFL---GHTKDVLSVAFSP-DNRQIVSGGRDNALRV 135
Query: 127 WSMKEFWTYVEKSFTWTDLPS--KFPTKYVQFPVFIAS---------------------V 163
           W++K    +       TD  S  +F +  +  PV ++                       
Sbjct: 136 WNVKGECMHTLSRGAHTDWVSCVRF-SPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKG 194
Query: 164 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 223
           H+NYV       D  L  S D + V    ++ + + GE  +++    P+ +     I FS
Sbjct: 195 HTNYVTSVTVSPDGSLCASSDKDGV---ARLWDLTKGEALSEMAAGAPINQ-----ICFS 246
Query: 224 CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ---TAMSYDGSTILSC 280
            + ++  AA    E  I +++L++   ++     H  SK  + +    A S DGST+ S 
Sbjct: 247 PNRYWMCAAT---EKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSG 303
Query: 281 CEDGAIWRW 289
             D  I  W
Sbjct: 304 YTDNVIRVW 312

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 74  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG+C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 130 FDESVRIWDVKTGMCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN++ LW+  
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNDLKLWDYS 225
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 226 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NMVYIWNLQTKEIVQKLQGH 281
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 282 TDVVISTACHP-TENIIASAALENDKTIKL 310

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 44/242 (18%)
Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
           FL  G  + +IR+ D+ N K+     GH   I  +   P    LV S S D +VR+W+++
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLR 195
Query: 85  TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 144
           TG C L  +   G    V +V   P D   IA+  +D  V++W         E  F    
Sbjct: 196 TGQCSLTLSIEDG----VTTVAVSPGDGKYIAAGSLDRAVRVWDS-------ETGFLVER 244
Query: 145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLW-----EPKMKEQSP 199
           L S+  +         + V +         G  ++S S+D  + LW       K   ++P
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRD-------GQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297
Query: 200 GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--------GNREGKIFVWELQSSPPV 251
             GT           C++ +I    DF  + A          G+++  +  W+ +S  P+
Sbjct: 298 NSGT-----------CEVTYIGHK-DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 345
Query: 252 LI 253
           L+
Sbjct: 346 LM 347

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 108/250 (43%), Gaps = 37/250 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 74  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG+C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 130 FDESVRIWDVKTGMCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWDYS 225
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 226 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NMVYIWNLQTKEIVQKLQGH 281
Query: 249 PPVLIARLSH 258
             V+I+   H
Sbjct: 282 TDVVISTACH 291

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 108/268 (40%), Gaps = 42/268 (15%)
Query: 42  NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 101
           N +L ++  GH  S+N +  +P     + SAS D++V+LWN + G  +       GH + 
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWN-RNGQLLQTLT---GHSSS 305
Query: 102 VLSVDFHPSDIYRIASCGMDNTVKIWSM--KEFWTYV-EKSFTW--------TDLPSKFP 150
           V  V F P D   IAS   D TVK+W+   +   T     S  W          + S   
Sbjct: 306 VWGVAFSP-DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD 364
Query: 151 TKYVQF------PVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG 202
            K V+        +   + HS+ V    +   G  I S S D  + LW    +       
Sbjct: 365 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ------- 417
Query: 203 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK 262
              +LQ        +W + FS D    A+A  ++  K++    Q    +L     H+   
Sbjct: 418 ---LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ----LLQTLTGHS--- 467
Query: 263 SPIRQTAMSYDGSTILSCCEDGAIWRWD 290
           S +R  A S DG TI S  +D  +  W+
Sbjct: 468 SSVRGVAFSPDGQTIASASDDKTVKLWN 495

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 71  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 127 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 180
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 181 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 221
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 278
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 279 TDVVISTACHP-TENIIASAALENDKTIKL 307

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 77  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 133 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 186
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 187 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 227
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 284
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 285 TDVVISTACHP-TENIIASAALENDKTIKL 313

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 67  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 122
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 123 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 176
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 177 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 217
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 218 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 274
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 275 TDVVISTACHP-TENIIASAALENDKTIKL 303

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 72  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 127
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 128 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 181
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 182 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 222
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 223 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 279
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 280 TDVVISTACHP-TENIIASAALENDKTIKL 308

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 71  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 126
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 127 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 180
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 181 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 221
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 278
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 279 TDVVISTACHP-TENIIASAALENDKTIKL 307

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 70  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 125
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 126 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 179
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 180 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 220
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 221 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 277
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 278 TDVVISTACHP-TENIIASAALENDKTIKL 306

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 76  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 131
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 132 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 185
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 186 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWDYS 227
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 228 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 283
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 284 TDVVISTACHP-TENIIASAALENDKTIKL 312

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 74  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 130 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWDYS 225
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 226 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 281
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 282 TDVVISTACHP-TENIIASAALENDKTIKL 310

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 88  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 143
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 144 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 197
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 198 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWDYS 239
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 240 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 295
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 296 TDVVISTACHP-TENIIASAALENDKTIKL 324

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 77  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 133 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 186
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 187 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 227
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 284
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 285 TDVVISTACHP-TENIIASAALENDKTIKL 313

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 74  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 130 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWDYS 225
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 226 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 281
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 282 TDVVISTACHP-TENIIASAALENDKTIKL 310

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 116/270 (42%), Gaps = 38/270 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 74  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 129
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 130 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 183
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 184 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWDYS 225
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 226 -KGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 281
Query: 249 PPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
             V+I+   H  +++ I   A+  D +  L
Sbjct: 282 TDVVISTACHP-TENIIASAALENDKTIKL 310

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 107/250 (42%), Gaps = 37/250 (14%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 77  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 132
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 133 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 186
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPK 193
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+  
Sbjct: 187 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD-Y 227
Query: 194 MKEQSPGEGTADILQKYPV-----PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS 248
            K +     T    +KY +          W +  S D   N   I N + K  V +LQ  
Sbjct: 228 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED---NLVYIWNLQTKEIVQKLQGH 284
Query: 249 PPVLIARLSH 258
             V+I+   H
Sbjct: 285 TDVVISTACH 294

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 93  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 148
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 149 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 202
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 191
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 203 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 242

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V+W+ + +    LV+   +  +++ DVS+ K  K+  GH + +      P + +L+VS S
Sbjct: 95  VAWSSDSN---LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGS 150
Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            DESVR+W+V+TG C+        H + V +V F+  D   I S   D   +IW      
Sbjct: 151 FDESVRIWDVKTGKCLKTLP---AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTAS-- 204
Query: 134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 191
               K+    D P   P  +V+F                  G +IL+ ++DN + LW+
Sbjct: 205 GQCLKTLIDDDNP---PVSFVKFSPN---------------GKYILAATLDNTLKLWD 244

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 13/176 (7%)
Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
           +++ G  + +IRV D  N+K      GH   +  ++       ++VS S D +VR+W+++
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK 191
Query: 85  TGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTW 142
            G C  +F    GH + V  +D     +I  I +   DNT+ +W + KE  + V      
Sbjct: 192 KGCCTHVFE---GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE--SSVPDHGEE 246
Query: 143 TDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWLGDFILSKSVDNEIVLWE-PKMK 195
            D P  F T   + P F+  +  H   V      G+ ++S S DN +++W+  +MK
Sbjct: 247 HDYPLVFHTPE-ENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK 301

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
           +++ G  +  IRV D  N+K      GH   +  ++       ++VS S D +VR+W+++
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA--HGGILVSGSTDRTVRVWDIK 191
Query: 85  TGICILIFAGAGGHRNEVLSVDF-HPSDIYRIASCGMDNTVKIWSM-KEFWTYVEKSFTW 142
            G C  +F    GH + V  +D     +I  I +   DNT+ +W + KE  + V      
Sbjct: 192 KGCCTHVFE---GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE--SSVPDHGEE 246
Query: 143 TDLPSKFPTKYVQFPVFIASV--HSNYVDCNRWLGDFILSKSVDNEIVLWE 191
            D P  F T   + P F+  +  H   V      G+ ++S S DN +++W+
Sbjct: 247 HDYPLVFHTPE-ENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWD 296

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
           F ++G  +G +R+ D++     + FVGH   +  +    L    +VSAS+D +++LWN  
Sbjct: 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTL 502
Query: 85  TGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSM 129
                 I  G  GHR+ V  V F P+ +   I S   D TVK+W++
Sbjct: 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 26  LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85
           ++ G  +  IRV + +  +    F  H D I  I   P KP  V+S S D +V+LWN + 
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWEN 128
Query: 86  GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131
              +       GH + V+ V F+P D    AS  +D TVK+WS+ +
Sbjct: 129 NWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 26  LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85
           ++ G  +  IRV + +  +    F  H D I  I   P KP  V+S S D +V+LWN + 
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWEN 128
Query: 86  GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131
              +       GH + V+ V F+P D    AS  +D TVK+WS+ +
Sbjct: 129 NWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 62/115 (53%), Gaps = 7/115 (6%)
Query: 16  WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD 75
           ++   DGI  +V+G ++  IRV DV       +  GH    + +    LK +++VS + D
Sbjct: 283 YSLQFDGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---ELKDNILVSGNAD 338
Query: 76  ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 130
            +V++W+++TG C+    G   H++ V  + F+ +  + I S   D TVK+W +K
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSD-DGTVKLWDLK 390

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 26  LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85
           +V+G  + +++V D   E    +  GH + +  ++   +    VVS S D S+R+W+V+T
Sbjct: 252 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVWDVET 308
Query: 86  GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 145
           G CI    G     ++ L+      D   + S   D+TVKIW                D+
Sbjct: 309 GNCIHTLTG-----HQSLTSGMELKDNI-LVSGNADSTVKIW----------------DI 346
Query: 146 PSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE 196
            +    + +Q P    + H + V C ++  +F+++ S D  + LW+ K  E
Sbjct: 347 KTGQCLQTLQGP----NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 393

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/266 (17%), Positives = 106/266 (39%), Gaps = 48/266 (18%)
Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
            +++G  +  ++V +    +   +  GH  ++   R   L    VVS S+D ++R+W+++
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTV---RCMHLHEKRVVSGSRDATLRVWDIE 227
Query: 85  TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 144
           TG C+ +     GH   V  V +   D  R+ S   D  VK+W  +              
Sbjct: 228 TGQCLHVLM---GHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPE-------------- 267
Query: 145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA 204
                     +  +     H+N V   ++ G  ++S S+D  I +W+ +         T 
Sbjct: 268 ---------TETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE---------TG 309
Query: 205 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP 264
           + +      +     +    +   N    GN +  + +W++++   +   +     +K  
Sbjct: 310 NCIHTLTGHQS----LTSGMELKDNILVSGNADSTVKIWDIKTGQCL---QTLQGPNKHQ 362
Query: 265 IRQTAMSYDGSTILSCCEDGAIWRWD 290
              T + ++ + +++  +DG +  WD
Sbjct: 363 SAVTCLQFNKNFVITSSDDGTVKLWD 388

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 26  LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85
           ++ G  +  IRV + +  +    F  H D I  I   P KP  V+S S D +V+LWN + 
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWEN 128
Query: 86  GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131
              +       GH + V+ V F+P D    AS  +D TVK+WS+ +
Sbjct: 129 NWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 5/107 (4%)
Query: 24  PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83
           PFL++G  +  I++ DVS      + VGH + +  +         ++S + D+++R+W+ 
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDY 367
Query: 84  QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 130
           +   C+        H + V S+DFH +  Y + +  +D TVK+W  +
Sbjct: 368 KNKRCMKTL---NAHEHFVTSLDFHKTAPY-VVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 109/281 (38%), Gaps = 53/281 (18%)
Query: 26  LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85
           +V+   +  I+V D       ++  GH DS+ +I +      L+ S S D +++LW+ Q 
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDI-SFDHSGKLLASCSADMTIKLWDFQG 181
Query: 86  GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 145
             CI       GH + V SV   P+  + I S   D T+K+W ++    Y  K+FT    
Sbjct: 182 FECIRTMH---GHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEVQT--GYCVKTFTG--- 232
Query: 146 PSKFPTKYVQFPVFIASVHSNYVDCNR--WLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 203
                             H  +V   R    G  I S S D  + +W    K     E  
Sbjct: 233 ------------------HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-----ECK 269
Query: 204 ADILQKYPVPECDIWFIKFSCDFHYNAAA--------------IGNREGKIFVWELQSSP 249
           A++ +   V EC  W  + S      A                 G+R+  I +W++ S+ 
Sbjct: 270 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV-STG 328
Query: 250 PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290
             L+  + H    + +R       G  ILSC +D  +  WD
Sbjct: 329 MCLMTLVGH---DNWVRGVLFHSGGKFILSCADDKTLRVWD 366

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 26  LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85
           ++ G  +  IRV + +  +    F  H D I  I   P KP  V+S S D +V+LWN + 
Sbjct: 70  IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWEN 128
Query: 86  GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131
              +       GH + V+ V F+P D    AS  +D TVK+WS+ +
Sbjct: 129 NWALE--QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 109/272 (40%), Gaps = 53/272 (19%)
Query: 26  LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85
           ++ G  +  +RV DV+  ++  + + H +++  +R       ++V+ SKD S+ +W++ +
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLR---FNNGMMVTCSKDRSIAVWDMAS 242
Query: 86  GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 145
              I +     GHR  V  VDF   D Y +++ G D T+K+W+                 
Sbjct: 243 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG-DRTIKVWN----------------- 282
Query: 146 PSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE-QSPGEGTA 204
                T   +F V   + H   + C ++    ++S S DN I LW+ +        EG  
Sbjct: 283 -----TSTCEF-VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 336
Query: 205 DILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL------QSSPPVLIARLSH 258
           ++++                 F       G  +GKI VW+L      ++    L  R   
Sbjct: 337 ELVR--------------CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382
Query: 259 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290
             S    R   + +D   I+S   D  I  WD
Sbjct: 383 EHSGRVFR---LQFDEFQIVSSSHDDTILIWD 411

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 14   VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
            VS  C    + ++  G  +G I++I++ N ++  S VGH  ++  I+      +L+ S+S
Sbjct: 971  VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI-SSS 1029
Query: 74   KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            +D  +++WN QTG  + + A    H+  V   DF      R+ S   D TVK+W++    
Sbjct: 1030 EDSVIQVWNWQTGDYVFLQA----HQETV--KDFRLLQDSRLLSWSFDGTVKVWNV--IT 1081
Query: 134  TYVEKSFT 141
              +E+ FT
Sbjct: 1082 GRIERDFT 1089

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 14   VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
            VS  C    + ++  G  +G I++I++ N ++  S VGH  ++  I+      +L+ S+S
Sbjct: 964  VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI-SSS 1022
Query: 74   KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
            +D  +++WN QTG  + + A    H+  V   DF      R+ S   D TVK+W++    
Sbjct: 1023 EDSVIQVWNWQTGDYVFLQA----HQETV--KDFRLLQDSRLLSWSFDGTVKVWNV--IT 1074
Query: 134  TYVEKSFT 141
              +E+ FT
Sbjct: 1075 GRIERDFT 1082

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 37/268 (13%)
Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
           F ++G  +G +R+ D++     + FVGH   +  +         +VS S+D++++LWN  
Sbjct: 77  FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNT- 134
Query: 85  TGICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 143
            G+C         H   V  V F P S    I SCG D  VK+W++              
Sbjct: 135 LGVCKYTVQDES-HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN------------ 181
Query: 144 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 203
               K  T ++    ++ +V  +        G    S   D + +LW+    +       
Sbjct: 182 ---CKLKTNHIGHTGYLNTVTVSPD------GSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS 263
            DI+          W     C     +  I + EGKI V EL+     +I+  S A+   
Sbjct: 233 GDIINALCFSPNRYWL----CAATGPSIKIWDLEGKIIVDELKQE---VISTSSKAE--- 282
Query: 264 PIRQTAMSY--DGSTILSCCEDGAIWRW 289
           P + T++++  DG T+ +   D  +  W
Sbjct: 283 PPQCTSLAWSADGQTLFAGYTDNLVRVW 310

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 37/268 (13%)
Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
           F ++G  +G +R+ D++     + FVGH   +  +         +VS S+D++++LWN  
Sbjct: 100 FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNT- 157
Query: 85  TGICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT 143
            G+C         H   V  V F P S    I SCG D  VK+W++              
Sbjct: 158 LGVCKYTVQDES-HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN------------ 204
Query: 144 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT 203
               K  T ++    ++ +V  +        G    S   D + +LW+    +       
Sbjct: 205 ---CKLKTNHIGHTGYLNTVTVSPD------GSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS 263
            DI+          W     C     +  I + EGKI V EL+     +I+  S A+   
Sbjct: 256 GDIINALCFSPNRYWL----CAATGPSIKIWDLEGKIIVDELKQE---VISTSSKAE--- 305
Query: 264 PIRQTAMSY--DGSTILSCCEDGAIWRW 289
           P + T++++  DG T+ +   D  +  W
Sbjct: 306 PPQCTSLAWSADGQTLFAGYTDNLVRVW 333

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 106/270 (39%), Gaps = 54/270 (20%)
Query: 35  IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 94
           +R+ DV+  + ++ FVGH   +  +     K S+++S S+D+++++W ++ G C+     
Sbjct: 89  LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 95  AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 149
             GH + V  V   P+     D   I S G D  VK W++ +F            + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 192
Query: 150 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 209
                      AS            G  I S   D EI+LW    K+             
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK-----------AM 231
Query: 210 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS------HAQSK 262
           Y +   D ++ + FS + ++ AAA       I V+ L   P  L+  L        A ++
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSAAAE 286
Query: 263 SPIRQTAMSYDGSTILSCCEDGAIWRWDAI 292
                 A S DG T+ +   D  I  W  +
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 54/270 (20%)
Query: 35  IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 94
           +R+ DV+  + ++ FVGH   +  +     K S+++S S+D+++++W ++ G C+     
Sbjct: 83  LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 139
Query: 95  AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 149
             GH + V  V   P+     D   I S G D  VK W++ +F            + + F
Sbjct: 140 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 186
Query: 150 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 209
                      AS            G  I S   D EI+LW    K+             
Sbjct: 187 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK-----------AM 225
Query: 210 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-----SHAQSKS 263
           Y +   D ++ + FS + ++ AAA       I V+ L   P  L+  L      ++++  
Sbjct: 226 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSKAAE 280
Query: 264 P-IRQTAMSYDGSTILSCCEDGAIWRWDAI 292
           P     A S DG T+ +   D  I  W  +
Sbjct: 281 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 310

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 54/270 (20%)
Query: 35  IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 94
           +R+ DV+  + ++ FVGH   +  +     K S+++S S+D+++++W ++ G C+     
Sbjct: 89  LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 95  AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 149
             GH + V  V   P+     D   I S G D  VK W++ +F            + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 192
Query: 150 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 209
                      AS            G  I S   D EI+LW    K+             
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK-----------AM 231
Query: 210 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-----SHAQSKS 263
           Y +   D ++ + FS + ++ AAA       I V+ L   P  L+  L      ++++  
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSKAAE 286
Query: 264 P-IRQTAMSYDGSTILSCCEDGAIWRWDAI 292
           P     A S DG T+ +   D  I  W  +
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 24  PFLVAGGINGIIRVIDVSNEKL-------HKSFVGHGDSINEIRTQPLKPSLVVSASKDE 76
           P L++G  +  + +  +  E+        HK+  GH   ++++     +    +S+S D+
Sbjct: 40  PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAISSSWDK 98
Query: 77  SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 129
           ++RLW+++TG     F    GH++EV SV F P D  +I S G +  +K+W++
Sbjct: 99  TLRLWDLRTGTTYKRFV---GHQSEVYSVAFSP-DNRQILSAGAEREIKLWNI 147

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 107/267 (40%), Gaps = 54/267 (20%)
Query: 35  IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 94
           +R+ DV+  + ++ FVGH   +  +     K S+++S S+D+++++W ++ G C+     
Sbjct: 89  LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 95  AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 149
             GH + V  V   P+     D   I S G D  VK W++ +F            + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 192
Query: 150 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 209
                      AS            G  I S   D EI+LW    K+             
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK-----------AM 231
Query: 210 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-----SHAQSKS 263
           Y +   D ++ + FS + ++ AAA       I V+ L   P  L+  L      ++++  
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSKAAE 286
Query: 264 P-IRQTAMSYDGSTILSCCEDGAIWRW 289
           P     A S DG T+ +   D  I  W
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 108/270 (40%), Gaps = 54/270 (20%)
Query: 35  IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 94
           +R+ DV+  + ++ FVGH   +  +     K S+++S S+D+++++W ++ G C+     
Sbjct: 89  LRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 95  AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 149
             GH + V  V   P+     D   I S G D  VK W++ +F            + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-----------QIEADF 192
Query: 150 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 209
                      AS            G  I S   D EI+LW    K+             
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIMLWNLAAKK-----------AM 231
Query: 210 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-----SHAQSKS 263
           Y +   D ++ + FS + ++ AAA       I V+ L   P  L+  L      ++++  
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSKAAE 286
Query: 264 P-IRQTAMSYDGSTILSCCEDGAIWRWDAI 292
           P     A S DG T+ +   D  I  W  +
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 105/267 (39%), Gaps = 54/267 (20%)
Query: 35  IRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG 94
           +R+ DV+  + ++ FVGH   +  +     K S ++S S+D+++++W ++ G C+     
Sbjct: 89  LRLWDVATGETYQRFVGHKSDVXSVDIDK-KASXIISGSRDKTIKVWTIK-GQCLATLL- 145
Query: 95  AGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF 149
             GH + V  V   P+     D   I S G D  VK W++ +F            + + F
Sbjct: 146 --GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQF-----------QIEADF 192
Query: 150 PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK 209
                      AS            G  I S   D EI LW    K+             
Sbjct: 193 IGHNSNINTLTASPD----------GTLIASAGKDGEIXLWNLAAKKAX----------- 231
Query: 210 YPVPECD-IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-----SHAQSKS 263
           Y +   D ++ + FS + ++ AAA       I V+ L   P  L+  L      ++++  
Sbjct: 232 YTLSAQDEVFSLAFSPNRYWLAAATAT---GIKVFSLD--PQYLVDDLRPEFAGYSKAAE 286
Query: 264 P-IRQTAMSYDGSTILSCCEDGAIWRW 289
           P     A S DG T+ +   D  I  W
Sbjct: 287 PHAVSLAWSADGQTLFAGYTDNVIRVW 313

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 12  YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVS 71
           + +S A + DG  +L +G I+GII + D++  KL  +  GH   I  +   P    L+V+
Sbjct: 166 FILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVT 223
Query: 72  ASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY 113
           AS D  +++++VQ        +   GH + VL+V F P D +
Sbjct: 224 ASDDGYIKIYDVQHANLAGTLS---GHASWVLNVAFCPDDTH 262

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 25  FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83
            L  G  +  + + D+ N KL   SF  H D I +++  P   +++ S+  D  + +W++
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 84  ------------QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131
                       + G   L+F   GGH  ++    ++P++ + I S   DN +++W M E
Sbjct: 348 SKIGEEQSPEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 12  YTVSWACNVDGIPFLVAGGINGII------------RVIDVSNEKLHKSFVGHGDSINEI 59
           Y +SW  N++G  +L++   +  I            RVID  N      F GH   + ++
Sbjct: 185 YGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGHTAVVEDV 237
Query: 60  RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 119
               L  SL  S + D+ + +W+ +             H  EV  + F+P   + +A+  
Sbjct: 238 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 297
Query: 120 MDNTVKIWSMKEF 132
            D TV +W ++  
Sbjct: 298 ADKTVALWDLRNL 310

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 12  YTVSWACNVDGIPFLVAGGINGII------------RVIDVSNEKLHKSFVGHGDSINEI 59
           Y +SW  N++G  +L++   +  I            RVID  N      F GH   + ++
Sbjct: 187 YGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGHTAVVEDV 239
Query: 60  RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 119
               L  SL  S + D+ + +W+ +             H  EV  + F+P   + +A+  
Sbjct: 240 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 299
Query: 120 MDNTVKIWSMKEF 132
            D TV +W ++  
Sbjct: 300 ADKTVALWDLRNL 312

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 12  YTVSWACNVDGIPFLVAGGINGII------------RVIDVSNEKLHKSFVGHGDSINEI 59
           Y +SW  N++G  +L++   +  I            RVID  N      F GH   + ++
Sbjct: 189 YGLSWNPNLNG--YLLSASDDHTICLWDINATPKEHRVIDAKN-----IFTGHTAVVEDV 241
Query: 60  RTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG 119
               L  SL  S + D+ + +W+ +             H  EV  + F+P   + +A+  
Sbjct: 242 AWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 301
Query: 120 MDNTVKIWSMKEF 132
            D TV +W ++  
Sbjct: 302 ADKTVALWDLRNL 314

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 25  FLVAGGINGIIRVIDVSNEKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83
            L  G  +  + + D+ N KL   +F  H D I ++   P   +++ S+  D  + +W++
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 84  ------------QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131
                       + G   L+F   GGH  ++    ++P++ + I S   DN ++IW M E
Sbjct: 350 SKIGEEQSAEDAEDGPPELLFI-HGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 26  LVAGGINGIIRVIDVS-------NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV 78
           +  GG++    + ++S       N  + +   GH    +  +  P + + +++ S D++ 
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTC 182
Query: 79  RLWNVQTGICILIFAGA--GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK 130
            LW+V TG  I IF      GH  +VLS+  +  +     S   D TV++W ++
Sbjct: 183 VLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 20  VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR 79
           VD   F++ G   G I V  ++ +      +GH   I+ +        L++SAS D ++R
Sbjct: 215 VDDDKFVIPG-PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLR 272
Query: 80  LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131
           +W+   G     F G   H   ++S  +   D  ++ SC MD +V++WS+K+
Sbjct: 273 IWHGGNGNSQNCFYG---HSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ 319

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 8/110 (7%)
Query: 23  IPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP-SLVVSASKDESVRLW 81
           +  L A G +G   + DV + +L +SF GHG  +  +   P +  +  VS   D+   +W
Sbjct: 167 MQILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Query: 82  NVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMK 130
           ++++G C+  F     H ++V SV ++PS D +  AS   D T +++ ++
Sbjct: 226 DMRSGQCVQAFE---THESDVNSVRYYPSGDAF--ASGSDDATCRLYDLR 270

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 6   QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEI--RTQP 63
           + +ES Y  S   + DG  FL  G  NG++ + DV ++   ++  GH   +  +      
Sbjct: 130 ETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHV 188
Query: 64  LKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT 123
           L       A     VR+ N Q G          GH +EV  + +  SD  ++AS G DN 
Sbjct: 189 LSSGSRSGAIHHHDVRIANHQIGTL-------QGHSSEVCGLAWR-SDGLQLASGGNDNV 240
Query: 124 VKIWSMK 130
           V+IW  +
Sbjct: 241 VQIWDAR 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.98
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.96
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.95
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.94
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.89
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.89
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.81
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.8
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.79
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.77
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.76
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.74
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.73
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.73
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.7
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.69
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.67
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.66
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.61
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.6
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.59
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.57
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.57
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.53
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.53
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.52
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.51
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.51
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.5
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.49
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.46
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.45
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.44
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.42
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.37
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.34
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.3
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.3
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.29
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.29
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.28
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.28
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.28
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.27
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.27
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.26
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.24
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.23
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.2
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.16
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.14
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.14
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.14
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.13
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.11
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.06
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.06
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.06
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.06
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.03
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.02
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.99
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.95
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.92
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.91
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.91
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.88
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.87
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.86
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.84
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.78
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.77
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.76
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.72
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.72
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.68
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.67
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.63
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.63
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.62
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.62
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.61
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.6
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.58
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.58
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.58
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.52
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.51
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.5
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.48
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.48
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.44
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.43
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.39
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.36
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.34
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.31
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.31
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.23
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.2
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.17
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.16
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.13
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.11
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.11
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.03
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.95
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.94
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.94
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.93
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.91
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.9
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.89
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.87
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.84
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.84
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.77
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.73
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.72
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.71
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.7
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.68
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.58
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.58
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.5
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	97.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.45
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.43
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.38
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.3
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.25
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.13
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.03
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.92
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.85
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.72
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.69
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.68
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.46
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.43
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.34
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.2
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.19
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.0
3ott_A	758	Two-component system sensor histidine kinase; beta	95.99
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.87
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.7
3ott_A	758	Two-component system sensor histidine kinase; beta	95.51
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.88
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.25
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.17
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	92.38
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.86
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.88
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.21
1q47_A	495	Semaphorin 3A; beta propeller, signaling protein;	88.95
3al9_A	539	Plexin-A2; beta-propeller, membrane protein, signa	87.53
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	86.35
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.56
4gz8_A	667	Semaphorin-3A; multi-domain, cell-CELL signaling,	83.9
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	83.42
3ol2_B	528	Plexin-B1; beta-propeller, signalling, extacellula	83.23
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	80.03

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.6e-49  Score=303.50  Aligned_cols=249  Identities=15%  Similarity=0.219  Sum_probs=219.0

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .++.|.+.|++++|+  |+++ +|++|+.||.|++||+.+++.+..+..|..+|.+++|+| ++++|++|+.|++|++||
T Consensus         8 ~~~~h~~~V~~~~fs--p~~~-~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            8 TFSNRSDRVKGIDFH--PTEP-WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             EEEEECSCEEEEEEC--SSSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEE
T ss_pred             eecCCCCceEEEEEC--CCCC-EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEE
Confidence            356899999999998  9998 999999999999999999999999999999999999999 889999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.+++.+..+.   +|...|.+++|+| ++.+|++|+.|++|++||++..                      ......+.
T Consensus        84 ~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~----------------------~~~~~~~~  137 (304)
T 2ynn_A           84 YNTGEKVVDFE---AHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN----------------------WALEQTFE  137 (304)
T ss_dssp             TTTCCEEEEEE---CCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGT----------------------TEEEEEEC
T ss_pred             CCCCcEEEEEe---CCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCC----------------------cchhhhhc
Confidence            99999999888   7999999999999 8889999999999999999873                      12345677


Q ss_pred             cCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590          163 VHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  239 (294)
Q Consensus       163 ~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~  239 (294)
                      +|...|.+++|+   +.+|++++.|+.|++||++....        .......+...+..+.|+|.+...+|++|+.|+.
T Consensus       138 ~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~  209 (304)
T 2ynn_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP--------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT  209 (304)
T ss_dssp             CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC--------SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE
T ss_pred             ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc--------cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe
Confidence            899999999997   46899999999999999986542        2222334557789999998665579999999999


Q ss_pred             EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |++||+++++  ....+.  +|...|.+++|+|++++|++|+.||.|++||+++
T Consensus       210 i~iWd~~~~~--~~~~~~--~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          210 IKIWDYQTKS--CVATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             EEEEETTTTE--EEEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEeCCCCc--cceeeC--CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            9999999875  334444  7889999999999999999999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.6e-49  Score=303.40  Aligned_cols=242  Identities=15%  Similarity=0.178  Sum_probs=204.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee----cccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF----VGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      +++..|++++|+  |++  .|++|+.||+|+|||+.+++....+    .+|.+.|++++|+| ++++|++|+.|++|++|
T Consensus        80 ~~~~~v~~~~~s--~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iw  154 (344)
T 4gqb_B           80 QTEAGVADLTWV--GER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVW  154 (344)
T ss_dssp             EESSCEEEEEEE--TTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEE
T ss_pred             ccCCCEEEEEEe--CCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence            456789999998  776  5889999999999999998765543    47999999999999 89999999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      |+.+++.+..+.   +|...|++++|+|++..+|++++.|++|++||+++..                       +...+
T Consensus       155 d~~~~~~~~~~~---~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-----------------------~~~~~  208 (344)
T 4gqb_B          155 DLAQQVVLSSYR---AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-----------------------PASQI  208 (344)
T ss_dssp             ETTTTEEEEEEC---CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-----------------------CEEEC
T ss_pred             ECCCCcEEEEEc---CcCCceEEEEecCCCCCceeeeccccccccccccccc-----------------------eeeee
Confidence            999999999888   7999999999999555789999999999999999732                       22222


Q ss_pred             --ecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          162 --SVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       162 --~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                        ..|...+.+++|+   +++|++|+.||.|++||+++++         .+..+..|...|++++|+|++. .+|++|+.
T Consensus       209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~---------~~~~~~~h~~~v~~v~fsp~g~-~~lasgs~  278 (344)
T 4gqb_B          209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS---------CVLSSAVHSQCVTGLVFSPHSV-PFLASLSE  278 (344)
T ss_dssp             C----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----------CCEEEECCSSCEEEEEECSSSS-CCEEEEET
T ss_pred             ecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc---------EEEEEcCCCCCEEEEEEccCCC-eEEEEEeC
Confidence              3455678888886   5688999999999999999765         5677888999999999999985 58999999


Q ss_pred             CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEeccCCcEEEEecCC
Q 022590          237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~~  293 (294)
                      |+.|++||+++++.   ..+  .+|...|++++|+|+++ +|++++.||.|++|++.+
T Consensus       279 D~~i~vwd~~~~~~---~~~--~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          279 DCSLAVLDSSLSEL---FRS--QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             TSCEEEECTTCCEE---EEE--CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             CCeEEEEECCCCcE---EEE--cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            99999999988752   233  37889999999999986 567899999999999865

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-48  Score=309.35  Aligned_cols=247  Identities=23%  Similarity=0.352  Sum_probs=222.3

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .+..|.++|++++|+  |+++ +|++|+.||+|++||+.+++....+.+|.+.|++++|+| ++++|++|+.|++|++||
T Consensus       103 ~l~gh~~~V~~~~~~--p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFH--PVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             EEECCSSCEEEEEEC--SSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEE
T ss_pred             eecccCCcEEEEEEc--CCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEe
Confidence            355899999999997  8898 999999999999999999999999999999999999999 889999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.+++.+..+.   +|...|.+++|+| ++.+|++|+.|++|++||+++                       ...+..+.
T Consensus       179 ~~~~~~~~~~~---~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~-----------------------~~~~~~~~  231 (410)
T 1vyh_C          179 FQGFECIRTMH---GHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQT-----------------------GYCVKTFT  231 (410)
T ss_dssp             TTSSCEEECCC---CCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT-----------------------CCEEEEEE
T ss_pred             CCCCceeEEEc---CCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC-----------------------CcEEEEEe
Confidence            99999888877   7999999999999 889999999999999999988                       44566778


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC-------------
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH-------------  227 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------------  227 (294)
                      +|...|.++.|+  +.++++++.|+.|++||+++++         ....+..|...+.+++|+|++.             
T Consensus       232 ~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  302 (410)
T 1vyh_C          232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE---------CKAELREHRHVVECISWAPESSYSSISEATGSETK  302 (410)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC--
T ss_pred             CCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------eeeEecCCCceEEEEEEcCcccccchhhhcccccc
Confidence            899999999997  7899999999999999998664         5667788889999999999742             


Q ss_pred             -----cceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          228 -----YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       228 -----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                           +.+|++|+.|+.|++||+++++.  ...+.  +|...|++++|+|++++|++|+.||.|++||+++
T Consensus       303 ~~~~~g~~l~sgs~D~~i~iwd~~~~~~--~~~~~--~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~  369 (410)
T 1vyh_C          303 KSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLV--GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN  369 (410)
T ss_dssp             -----CCEEEEEETTSEEEEEETTTTEE--EEEEE--CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTT
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECCCCce--EEEEE--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence                 35899999999999999998763  33333  7888999999999999999999999999999864

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.4e-48  Score=305.33  Aligned_cols=244  Identities=22%  Similarity=0.382  Sum_probs=218.9

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .+..|.+.|.+++|+  |+|+ +|++|+.||+|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.|++|++||
T Consensus       145 ~l~~h~~~V~~v~~~--~~~~-~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd  220 (410)
T 1vyh_C          145 TLKGHTDSVQDISFD--HSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWE  220 (410)
T ss_dssp             EECCCSSCEEEEEEC--TTSS-EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEE
T ss_pred             EEeccCCcEEEEEEc--CCCC-EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEE
Confidence            356899999999997  8898 999999999999999999999999999999999999999 889999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.++.++..+.   +|...|.++.|+| ++.+|++|+.|+.|++||+++                       ......+.
T Consensus       221 ~~~~~~~~~~~---~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~-----------------------~~~~~~~~  273 (410)
T 1vyh_C          221 VQTGYCVKTFT---GHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVAT-----------------------KECKAELR  273 (410)
T ss_dssp             TTTCCEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----------------------CCEEEEEC
T ss_pred             CCCCcEEEEEe---CCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCC-----------------------CceeeEec
Confidence            99999998888   7999999999999 899999999999999999987                       33455667


Q ss_pred             cCCCceeeccee----------------------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE
Q 022590          163 VHSNYVDCNRWL----------------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI  220 (294)
Q Consensus       163 ~~~~~i~~~~~~----------------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  220 (294)
                      .|...|.++.|+                      +.+|++|+.|+.|++||++++.         .+..+..|...|.++
T Consensus       274 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~---------~~~~~~~h~~~v~~v  344 (410)
T 1vyh_C          274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM---------CLMTLVGHDNWVRGV  344 (410)
T ss_dssp             CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE---------EEEEEECCSSCEEEE
T ss_pred             CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc---------eEEEEECCCCcEEEE
Confidence            888889988885                      3489999999999999998664         677788899999999


Q ss_pred             EEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          221 KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       221 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +|+|++  .+|++|+.||.|++||+.+.+..  ..+.  .|...|++++|+|++++|++|+.||.|++|+++
T Consensus       345 ~~~~~g--~~l~s~s~D~~i~vwd~~~~~~~--~~~~--~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          345 LFHSGG--KFILSCADDKTLRVWDYKNKRCM--KTLN--AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EECSSS--SCEEEEETTTEEEEECCTTSCCC--EEEE--CCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEcCCC--CEEEEEeCCCeEEEEECCCCceE--EEEc--CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999998  58999999999999999887643  3333  778899999999999999999999999999974

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.7e-47  Score=292.21  Aligned_cols=243  Identities=14%  Similarity=0.206  Sum_probs=220.9

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      ++.|...|.+++|+  |++. ++++++.|+.|++||+.+++.+..+..|...+.+++|+| ++++|++|+.||.|++|++
T Consensus        76 l~gh~~~v~~~~~~--~~~~-~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~  151 (321)
T 3ow8_A           76 LEGHQLGVVSVDIS--HTLP-IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGV  151 (321)
T ss_dssp             ECCCSSCEEEEEEC--SSSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEET
T ss_pred             eccCCCCEEEEEEC--CCCC-EEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEc
Confidence            56899999999997  8888 999999999999999999999999999999999999999 8999999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      ++++....+.   .|...|.+++|+| ++.+|++|+.||.|++||+++                       ...+..+..
T Consensus       152 ~~~~~~~~~~---~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~-----------------------~~~~~~~~~  204 (321)
T 3ow8_A          152 ESGKKEYSLD---TRGKFILSIAYSP-DGKYLASGAIDGIINIFDIAT-----------------------GKLLHTLEG  204 (321)
T ss_dssp             TTCSEEEEEE---CSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----------------------TEEEEEECC
T ss_pred             CCCceeEEec---CCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCC-----------------------CcEEEEEcc
Confidence            9999888887   5888999999999 899999999999999999987                       445667788


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      |..+|.+++|+  +++|++++.|+.|++||++..+         ....+..|...|.+++|+|++  .+|++++.|+.|+
T Consensus       205 h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~~~~sp~~--~~l~s~s~D~~v~  273 (321)
T 3ow8_A          205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN---------LAGTLSGHASWVLNVAFCPDD--THFVSSSSDKSVK  273 (321)
T ss_dssp             CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEE
T ss_pred             cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc---------eeEEEcCCCCceEEEEECCCC--CEEEEEeCCCcEE
Confidence            99999999997  7899999999999999998654         567788899999999999998  5899999999999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +||+++.+  ....+.  .|...|.+++|+|++++|++++.||.|++||..
T Consensus       274 iwd~~~~~--~~~~~~--~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          274 VWDVGTRT--CVHTFF--DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEETTTTE--EEEEEC--CCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEeCCCCE--EEEEEc--CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999875  333443  778899999999999999999999999999963

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8e-47  Score=287.66  Aligned_cols=260  Identities=17%  Similarity=0.204  Sum_probs=213.2

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC--ccccceecccCcceEEEEeCCC-CCceEEEeeCCCcE
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN--EKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESV   78 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~--~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i   78 (294)
                      ..+..|.+.|++++|+  |+|+ +||+|+.|++|+|||+.+  .+.+.++.+|.++|++++|++. ++++|++|+.|++|
T Consensus         3 ~~~~~h~~~V~~~~~s--~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMD--YYGK-RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             EECCSCSSCEEEEEEC--TTSS-EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             eeccCCcCceEEEEEC--CCCC-EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            3457999999999998  9998 999999999999999974  4677889999999999999863 37899999999999


Q ss_pred             EEEEcCCCc--eEEEeeccCCCCCceeEEEEecCC-CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           79 RLWNVQTGI--CILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        79 ~vwd~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      ++||+.+++  .+..+.   +|...|.+++|+|+. +.+|++++.|+.|++||++....                     
T Consensus        80 ~iWd~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~---------------------  135 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHA---VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT---------------------  135 (297)
T ss_dssp             EEEEBSSSCBCCCEEEC---CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC---------------------
T ss_pred             EEEEcCCCceEEEEEee---cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc---------------------
Confidence            999998874  444454   699999999999932 78999999999999999986310                     


Q ss_pred             eceEEeecCCCceeecceec---------------ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE
Q 022590          156 FPVFIASVHSNYVDCNRWLG---------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI  220 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~~---------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  220 (294)
                      .....+..|...|.+++|+.               ++|++++.|+.|++||++.+..     .......+..|...|.++
T Consensus       136 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~-----~~~~~~~l~~H~~~V~~v  210 (297)
T 2pm7_B          136 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVRDV  210 (297)
T ss_dssp             BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEEEE
T ss_pred             eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc-----eEEEEEEecCCCCceEEE
Confidence            11245678899999999973               4899999999999999986542     222456778899999999


Q ss_pred             EEcccCC-cceEEEEcCCCeEEEEeccCCCcee-eeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          221 KFSCDFH-YNAAAIGNREGKIFVWELQSSPPVL-IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       221 ~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +|+|++. +.+|++++.|+.|++||++...... ...+....|...|.+++|+|++++||+++.||.|++|+...
T Consensus       211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            9999851 2689999999999999998753211 12222236678899999999999999999999999999763

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=9.2e-47  Score=290.02  Aligned_cols=246  Identities=19%  Similarity=0.335  Sum_probs=215.4

Q ss_pred             ccccCceeEEEEEeec--CCCceEEEEeecCCeEEEEEcCCccc--cceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590            4 VDQKEESFYTVSWACN--VDGIPFLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      ++.|++.|++++|++.  +++. +|++|+.|++|+||++.+++.  ...+.+|...|.+++|++ ++.++++++.|++|+
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~  105 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIR  105 (321)
T ss_dssp             TTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEE
T ss_pred             cccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence            3589999999999843  2466 899999999999999987653  456889999999999999 889999999999999


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      +||+.+++.+..+.   .|...+.+++|+| ++.+|++++.||.|++||++.                       .....
T Consensus       106 lWd~~~~~~~~~~~---~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~-----------------------~~~~~  158 (321)
T 3ow8_A          106 LWDLENGKQIKSID---AGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVES-----------------------GKKEY  158 (321)
T ss_dssp             EEETTTTEEEEEEE---CCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTT-----------------------CSEEE
T ss_pred             EEECCCCCEEEEEe---CCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCC-----------------------CceeE
Confidence            99999999988887   5888999999999 889999999999999999987                       33455


Q ss_pred             EeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          160 IASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      .+..|...|.+++|+  +++|++++.|+.|++||+++++         .+..+..|..+|.+++|+|++  .+|++|+.|
T Consensus       159 ~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~spd~--~~l~s~s~d  227 (321)
T 3ow8_A          159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK---------LLHTLEGHAMPIRSLTFSPDS--QLLVTASDD  227 (321)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------EEEEECCCSSCCCEEEECTTS--CEEEEECTT
T ss_pred             EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------EEEEEcccCCceeEEEEcCCC--CEEEEEcCC
Confidence            667788899999997  8899999999999999998664         677788889999999999998  699999999


Q ss_pred             CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |.|++||+++.+.  ...+.  +|...|.+++|+|++++|++++.||.|++||+++
T Consensus       228 g~i~iwd~~~~~~--~~~~~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~  279 (321)
T 3ow8_A          228 GYIKIYDVQHANL--AGTLS--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT  279 (321)
T ss_dssp             SCEEEEETTTCCE--EEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CeEEEEECCCcce--eEEEc--CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence            9999999998763  33444  7889999999999999999999999999999874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.2e-46  Score=289.45  Aligned_cols=249  Identities=21%  Similarity=0.327  Sum_probs=211.7

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-----ccccceecccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES   77 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~   77 (294)
                      .++.|.++|++++|+  |++..+|++|+.|++|++|++.+     +.++..+.+|...|++++|+| ++.+|++|+.|++
T Consensus        12 ~l~gH~~~V~~l~~~--~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~   88 (319)
T 3frx_A           12 TLEGHNGWVTSLATS--AGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKT   88 (319)
T ss_dssp             EECCCSSCEEEEEEC--SSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred             EEccccceEEEEEcc--CCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECC-CCCEEEEEeCCCE
Confidence            467999999999998  65533999999999999999864     345678899999999999999 8999999999999


Q ss_pred             EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      |++||+.+++.+..+.   +|...|.+++|+| ++.+|++|+.|++|++||++.                        ..
T Consensus        89 v~~wd~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~------------------------~~  140 (319)
T 3frx_A           89 LRLWDVATGETYQRFV---GHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKG------------------------QC  140 (319)
T ss_dssp             EEEEETTTTEEEEEEE---CCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTS------------------------CE
T ss_pred             EEEEECCCCCeeEEEc---cCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC------------------------Ce
Confidence            9999999999998888   7999999999999 889999999999999999975                        23


Q ss_pred             eEEeecCCCceeecceec--------ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          158 VFIASVHSNYVDCNRWLG--------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~~--------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                      ...+.+|...|.++.|.+        ..+++++.|+.|++||+++.+         ....+..|...|.+++|+|++  .
T Consensus       141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---------~~~~~~~h~~~v~~~~~sp~g--~  209 (319)
T 3frx_A          141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ---------IEADFIGHNSNINTLTASPDG--T  209 (319)
T ss_dssp             EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE---------EEEEECCCCSCEEEEEECTTS--S
T ss_pred             EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch---------hheeecCCCCcEEEEEEcCCC--C
Confidence            456678999999998852        379999999999999998653         566778899999999999999  6


Q ss_pred             eEEEEcCCCeEEEEeccCCCceeeeec--------------------------------------c------ccccCCCe
Q 022590          230 AAAIGNREGKIFVWELQSSPPVLIARL--------------------------------------S------HAQSKSPI  265 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~--------------------------------------~------~~~~~~~v  265 (294)
                      +|++++.||.|++||+.+.+.......                                      .      ...+...+
T Consensus       210 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v  289 (319)
T 3frx_A          210 LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA  289 (319)
T ss_dssp             EEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcce
Confidence            999999999999999987643211100                                      0      01234568


Q ss_pred             EEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          266 RQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       266 ~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+++|+|+|++|++|+.||.|++||+.+
T Consensus       290 ~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          290 VSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             eEEEECCCCCEEEEeecCceEEEEEEee
Confidence            8999999999999999999999999865

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.4e-46  Score=288.91  Aligned_cols=245  Identities=19%  Similarity=0.260  Sum_probs=215.8

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|.++|++++|+  |+++ +|++|+.||.|++||..+++.+..+..|...|.+++|+| ++++|++|+.|+.|++|++
T Consensus        51 l~gH~~~v~~~~~s--~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           51 LRGHLAKIYAMHWG--TDSR-LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             ECCCSSCEEEEEEC--TTSS-EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEET
T ss_pred             ecCCCCceEEEEEC--CCCC-EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEEC
Confidence            56899999999997  8998 999999999999999999999999999999999999999 8899999999999999999


Q ss_pred             CCCc----eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           84 QTGI----CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        84 ~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      .+++    ....+.   +|.+.|.++.|++ ++. +++++.|+.|++||+++                       .....
T Consensus       127 ~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~-l~s~s~d~~i~~wd~~~-----------------------~~~~~  178 (340)
T 1got_B          127 KTREGNVRVSRELA---GHTGYLSCCRFLD-DNQ-IVTSSGDTTCALWDIET-----------------------GQQTT  178 (340)
T ss_dssp             TTCSBSCEEEEEEE---CCSSCEEEEEEEE-TTE-EEEEETTSCEEEEETTT-----------------------TEEEE
T ss_pred             ccCCCcceeEEEec---CCCccEEEEEECC-CCc-EEEEECCCcEEEEECCC-----------------------CcEEE
Confidence            8753    334444   7999999999998 655 89999999999999987                       44566


Q ss_pred             EeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          160 IASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      .+.+|...|.+++|+  ++++++++.|+.|++||++++.         ....+..|...|.+++|+|++  .+|++|+.|
T Consensus       179 ~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~---------~~~~~~~h~~~v~~v~~~p~~--~~l~s~s~d  247 (340)
T 1got_B          179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM---------CRQTFTGHESDINAICFFPNG--NAFATGSDD  247 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS---------EEEEECCCSSCEEEEEECTTS--SEEEEEETT
T ss_pred             EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe---------eEEEEcCCcCCEEEEEEcCCC--CEEEEEcCC
Confidence            778899999999997  7799999999999999998764         567788889999999999998  689999999


Q ss_pred             CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |.|++||+++.+..  ..+.+..+...|++++|+|+|++|++|+.||.|++||+.+
T Consensus       248 ~~v~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~  301 (340)
T 1got_B          248 ATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             SCEEEEETTTTEEE--EEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CcEEEEECCCCcEE--EEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence            99999999987533  3333334556899999999999999999999999999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.1e-46  Score=293.86  Aligned_cols=244  Identities=17%  Similarity=0.198  Sum_probs=201.0

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccc----eecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK----SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      +|...|++++|+  |+++  +++++.||+|+|||+.+++...    ...+|...|++++|+| ++++|++|+.|++|++|
T Consensus        92 ~~~~~V~~~~~s--~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iw  166 (357)
T 4g56_B           92 QTEAGVTDVAWV--SEKG--ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVW  166 (357)
T ss_dssp             ECSSCEEEEEEE--TTTE--EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEE
T ss_pred             CCCCCEEEEEEc--CCCC--EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEE
Confidence            688899999998  8885  6678889999999998876543    2347999999999999 89999999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      |+.+++.+..+.   +|...|++++|+|.+..++++++.||.|++||+++....                     .....
T Consensus       167 d~~~~~~~~~~~---~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~---------------------~~~~~  222 (357)
T 4g56_B          167 DLSQKAVLKSYN---AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA---------------------TRIDF  222 (357)
T ss_dssp             ETTTTEEEEEEC---CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB---------------------CBCCC
T ss_pred             ECCCCcEEEEEc---CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee---------------------eeeee
Confidence            999999998888   799999999999955568999999999999999874211                     11223


Q ss_pred             ecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          162 SVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       162 ~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ..|...+.+++|+   +.+|++|+.|+.|++||+++++         .+..+..+...|++++|+|++. .+|++|+.||
T Consensus       223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~---------~~~~~~~~~~~v~~l~~sp~~~-~~lasgs~D~  292 (357)
T 4g56_B          223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD---------SAQTSAVHSQNITGLAYSYHSS-PFLASISEDC  292 (357)
T ss_dssp             TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG---------GCEEECCCSSCEEEEEECSSSS-CCEEEEETTS
T ss_pred             ccccccccchhhhhcccceEEEeecccceeEEECCCCc---------EeEEEeccceeEEEEEEcCCCC-CEEEEEeCCC
Confidence            4567788999996   5689999999999999998765         4667788889999999999975 5899999999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEEeccCCcEEEEecCC
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|++||+++++.  ...+   +|...|++++|+| ++++|++++.||.|++|++..
T Consensus       293 ~i~iwd~~~~~~--~~~~---~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          293 TVAVLDADFSEV--FRDL---SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             CEEEECTTSCEE--EEEC---CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             EEEEEECCCCcE--eEEC---CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            999999988753  2222   6789999999998 799999999999999999864

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.1e-46  Score=294.95  Aligned_cols=254  Identities=20%  Similarity=0.299  Sum_probs=202.6

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCC--------------------
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP--------------------   63 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~--------------------   63 (294)
                      +++|.++|++++|+  |+++ +|++|+.||+|+|||+.+++....+..|...|.+++|+|                    
T Consensus        62 l~gH~~~V~~~~~s--p~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a           62 LQGHSGKVYSLDWT--PEKN-WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             ECCCSSCEEEEEEC--TTSS-CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred             ccccccEEEEEEEc--CCCC-EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence            56899999999998  8998 999999999999999988776666655555555555554                    


Q ss_pred             -----------------------------CCCceEEEeeCCCcEEEEEcCCCceEEEeec--cCCCCCceeEEEEecCCC
Q 022590           64 -----------------------------LKPSLVVSASKDESVRLWNVQTGICILIFAG--AGGHRNEVLSVDFHPSDI  112 (294)
Q Consensus        64 -----------------------------~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~  112 (294)
                                                   .++..|++|+.|++|++||+.+++.+..+..  ..+|...|.+++|+|.++
T Consensus       139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  218 (380)
T 3iz6_a          139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA  218 (380)
T ss_dssp             CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred             CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCC
Confidence                                         2234566777777777777777776665521  136899999999988688


Q ss_pred             ceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEe
Q 022590          113 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW  190 (294)
Q Consensus       113 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw  190 (294)
                      ++|++|+.|+.|++||++..                      ......+.+|...|.+++|+  +++|++++.|++|++|
T Consensus       219 ~~l~sgs~D~~v~~wd~~~~----------------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lw  276 (380)
T 3iz6_a          219 NMFISGSCDTTVRLWDLRIT----------------------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF  276 (380)
T ss_dssp             CEEEEEETTSCEEEEETTTT----------------------CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEE
T ss_pred             CEEEEEECCCeEEEEECCCC----------------------CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEE
Confidence            99999999999999999852                      23456778899999999997  7899999999999999


Q ss_pred             cCCCCCCCCCCCCceeeeeeecC-------CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCC
Q 022590          191 EPKMKEQSPGEGTADILQKYPVP-------ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS  263 (294)
Q Consensus       191 d~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  263 (294)
                      |+++++         .+..+..+       ...+.+++|+|++  .++++|+.||.|++||+...+..........+|..
T Consensus       277 d~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~  345 (380)
T 3iz6_a          277 DMRTGH---------QLQVYNREPDRNDNELPIVTSVAFSISG--RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEG  345 (380)
T ss_dssp             ETTTTE---------EEEEECCCCSSSCCSSCSCSEEEECSSS--SEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred             ECCCCc---------EEEEecccccccccccCceEEEEECCCC--CEEEEEECCCCEEEEECCCCceEEEEecccCCCCC
Confidence            999765         23333221       2348899999999  69999999999999999887644333222347889


Q ss_pred             CeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          264 PIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       264 ~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|++++|+|+|++|++|+.||.|++|++..
T Consensus       346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          346 RISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             ceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            999999999999999999999999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.5e-46  Score=286.48  Aligned_cols=255  Identities=17%  Similarity=0.207  Sum_probs=202.7

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCC-CCceEEEeeCCCcEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRL   80 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~v   80 (294)
                      +..|++.|++++|+  |+|+ +||+|+.|++|+|||+.+++  .+..+.+|.++|++++|+|. ++++|++|+.|++|++
T Consensus         9 ~~~H~~~V~~v~~s--~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i   85 (316)
T 3bg1_A            9 DTSHEDMIHDAQMD--YYGT-RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII   85 (316)
T ss_dssp             -----CCEEEEEEC--GGGC-EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred             cccccCeEEEeeEc--CCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence            45899999999998  8898 99999999999999998764  46778999999999999862 4789999999999999


Q ss_pred             EEcCCCc--eEEEeeccCCCCCceeEEEEecCC-CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           81 WNVQTGI--CILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        81 wd~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      ||+++++  ....+.   +|...|.+++|+|+. +.+|++|+.|+.|++||++....                    ...
T Consensus        86 Wd~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~--------------------~~~  142 (316)
T 3bg1_A           86 WREENGTWEKSHEHA---GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ--------------------WEV  142 (316)
T ss_dssp             ECCSSSCCCEEEEEC---CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC--------------------EEE
T ss_pred             EECCCCcceEEEEcc---CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC--------------------cce
Confidence            9998874  444555   699999999999932 78999999999999999986311                    011


Q ss_pred             eEEeecCCCceeecceec-------------------ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCee
Q 022590          158 VFIASVHSNYVDCNRWLG-------------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW  218 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~~-------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~  218 (294)
                      ......|...+.++.|++                   .+|++++.|+.|++||++...      .......+..|...|.
T Consensus       143 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~------~~~~~~~l~~h~~~V~  216 (316)
T 3bg1_A          143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG------QWKEEQKLEAHSDWVR  216 (316)
T ss_dssp             CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS------CEEEEECCBCCSSCEE
T ss_pred             eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC------ccceeeecccCCCceE
Confidence            223456777788887763                   589999999999999996432      2235567788899999


Q ss_pred             EEEEcccCC--cceEEEEcCCCeEEEEeccCCCc--eeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          219 FIKFSCDFH--YNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       219 ~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +++|+|++.  ..+|++++.||.|++|++++...  .....+.  .|...|.+++|+|++++|++++.||.|++|+..
T Consensus       217 ~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          217 DVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             EEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            999999862  25899999999999999986321  1111122  567899999999999999999999999999975

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5e-45  Score=284.22  Aligned_cols=246  Identities=15%  Similarity=0.223  Sum_probs=215.1

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      ++.|.++|++++|+  |+++ +|++|+.||+|++||..+++....+..|...|.+++|+| ++.+|++|+.|+.+++|++
T Consensus        60 l~gH~~~V~~~~~s--~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~  135 (354)
T 2pbi_B           60 LKGHGNKVLCMDWC--KDKR-RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPL  135 (354)
T ss_dssp             EECCSSCEEEEEEC--TTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEEC
T ss_pred             ecCCCCeEEEEEEC--CCCC-EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEE
Confidence            56899999999998  8998 999999999999999999998889999999999999999 8999999999999999998


Q ss_pred             CCC------ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           84 QTG------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        84 ~~~------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      ...      .....+.   +|...|.+++|+| ++..|++++.|++|++||+++                       ...
T Consensus       136 ~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~-----------------------~~~  188 (354)
T 2pbi_B          136 TFDKNENMAAKKKSVA---MHTNYLSACSFTN-SDMQILTASGDGTCALWDVES-----------------------GQL  188 (354)
T ss_dssp             CCCTTCCSGGGCEEEE---ECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT-----------------------CCE
T ss_pred             eccccccccccceeee---ccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCC-----------------------CeE
Confidence            643      2334444   6999999999999 888899999999999999988                       445


Q ss_pred             eEEeecCCCceeeccee----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590          158 VFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      +..+.+|...|.++.++    +++|++++.||.|++||+++++         .+..+..|...|.+++|+|++  .+|++
T Consensus       189 ~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~---------~~~~~~~h~~~v~~v~~~p~~--~~l~s  257 (354)
T 2pbi_B          189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ---------CVQAFETHESDVNSVRYYPSG--DAFAS  257 (354)
T ss_dssp             EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTS--SEEEE
T ss_pred             EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc---------EEEEecCCCCCeEEEEEeCCC--CEEEE
Confidence            66778899999998884    5799999999999999999765         577788899999999999998  68999


Q ss_pred             EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++.|+.|++||++..+...  .+....+...+.+++|+|++++|++|+.|+.|++||+.+
T Consensus       258 ~s~D~~v~lwd~~~~~~~~--~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~  315 (354)
T 2pbi_B          258 GSDDATCRLYDLRADREVA--IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK  315 (354)
T ss_dssp             EETTSCEEEEETTTTEEEE--EECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EeCCCeEEEEECCCCcEEE--EEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC
Confidence            9999999999999875332  233224446789999999999999999999999999854

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=5.9e-45  Score=282.57  Aligned_cols=239  Identities=20%  Similarity=0.356  Sum_probs=208.4

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc----ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      ..|...|.+++|+  |+|+ +|++|+.|+.|++|++.+.+    ....+.+|.+.|.++.|++ ++ .+++++.|++|++
T Consensus        94 ~~~~~~v~~~~~s--~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~s~d~~i~~  168 (340)
T 1got_B           94 PLRSSWVMTCAYA--PSGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DN-QIVTSSGDTTCAL  168 (340)
T ss_dssp             ECSSSCEEEEEEC--TTSS-EEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TT-EEEEEETTSCEEE
T ss_pred             ecCCccEEEEEEC--CCCC-EEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CC-cEEEEECCCcEEE
Confidence            4688899999998  8998 99999999999999997753    4556788999999999998 54 5899999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ||+.+++.+..+.   +|...|.+++|+| ++.+|++|+.|+.|++||+++                       ......
T Consensus       169 wd~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~-----------------------~~~~~~  221 (340)
T 1got_B          169 WDIETGQQTTTFT---GHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVRE-----------------------GMCRQT  221 (340)
T ss_dssp             EETTTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----------------------CSEEEE
T ss_pred             EECCCCcEEEEEc---CCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCC-----------------------CeeEEE
Confidence            9999999988887   7999999999999 889999999999999999987                       344667


Q ss_pred             eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee--cCCCCeeEEEEcccCCcceEEEEcC
Q 022590          161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      +..|...|.+++|+  +++|++++.|+.|++||++..+         .+..+.  .+...+.+++|+|++  .+|++|+.
T Consensus       222 ~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~s~~g--~~l~~g~~  290 (340)
T 1got_B          222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ---------ELMTYSHDNIICGITSVSFSKSG--RLLLAGYD  290 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------EEEEECCTTCCSCEEEEEECTTS--SEEEEEET
T ss_pred             EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc---------EEEEEccCCcccceEEEEECCCC--CEEEEECC
Confidence            78899999999997  7899999999999999998654         233333  223579999999999  69999999


Q ss_pred             CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      ||.|++||+.+.+.  ...+.  +|..+|.+++|+|+|++|++|+.||.|++||
T Consensus       291 d~~i~vwd~~~~~~--~~~~~--~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          291 DFNCNVWDALKADR--AGVLA--GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TSEEEEEETTTCCE--EEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCeEEEEEcccCcE--eeEee--cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            99999999988763  33333  7889999999999999999999999999997

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-44  Score=280.99  Aligned_cols=261  Identities=18%  Similarity=0.248  Sum_probs=211.6

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc--cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      +.|.+.|.+++|+  |+|+ +|++|+.|+.|++|+..++  +.+..+.+|...|.+++|+| ++++|++|+.|++|++||
T Consensus        58 ~~h~~~v~~~~~s--p~g~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd  133 (345)
T 3fm0_A           58 EGHQRTVRKVAWS--PCGN-YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWE  133 (345)
T ss_dssp             SSCSSCEEEEEEC--TTSS-EEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred             cccCCcEEEEEEC--CCCC-EEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEE
Confidence            4799999999998  8998 9999999999999998776  45678899999999999999 899999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.++..........+|...|.+++|+| ++.+|++++.|+.|++||++...                     ......+.
T Consensus       134 ~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~---------------------~~~~~~~~  191 (345)
T 3fm0_A          134 VDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDD---------------------WVCCATLE  191 (345)
T ss_dssp             ECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTE---------------------EEEEEEEC
T ss_pred             CCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCC---------------------EEEEEEec
Confidence            987754433333337999999999999 88999999999999999987621                     12345678


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC------CCceeeeeeec-CCCCeeEEEEcccCCcceEEE
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE------GTADILQKYPV-PECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      +|...|.+++|+  +++|++++.|++|++||..........      .....+..+.. |...|..++|+|++  ..|++
T Consensus       192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~l~s  269 (345)
T 3fm0_A          192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT--GALAT  269 (345)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT--CCEEE
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC--CEEEE
Confidence            899999999997  789999999999999997543221110      11122333433 67889999999998  58999


Q ss_pred             EcCCCeEEEEeccCCCce----eeee-ccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecCC
Q 022590          234 GNREGKIFVWELQSSPPV----LIAR-LSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~----~~~~-~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++.|+.|++|+.......    .... ....+|...|++++|+|++ .+||+|+.||.|++|++.+
T Consensus       270 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          270 ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence            999999999998765311    1111 1134788999999999998 4999999999999999875

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2e-44  Score=275.37  Aligned_cols=245  Identities=21%  Similarity=0.305  Sum_probs=207.4

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|..+|.+++|+  |+++ +|++|+.|+.|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||+
T Consensus        51 ~~~~~~~v~~~~~~--~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~  126 (304)
T 2ynn_A           51 IQVTETPVRAGKFI--ARKN-WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNW  126 (304)
T ss_dssp             EECCSSCEEEEEEE--GGGT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEG
T ss_pred             eeccCCcEEEEEEe--CCCC-EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEEC
Confidence            45788999999998  8888 999999999999999999999999999999999999999 8899999999999999999


Q ss_pred             CCCce-EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           84 QTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        84 ~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +++.. ...+.   +|...|.+++|+|.++.+|++|+.|++|++||++...                      .......
T Consensus       127 ~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~----------------------~~~~~~~  181 (304)
T 2ynn_A          127 ENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----------------------PNFTLTT  181 (304)
T ss_dssp             GGTTEEEEEEC---CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS----------------------CSEEEEC
T ss_pred             CCCcchhhhhc---ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC----------------------ccceecc
Confidence            88744 44455   7999999999999677899999999999999998631                      1122234


Q ss_pred             cCCCceeeccee----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          163 VHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       163 ~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      .|...+..+.|.    +.+|++++.|+.|++||+++++         .+..+..|...+..++|+|++  .+|++|+.||
T Consensus       182 ~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~---------~~~~~~~h~~~v~~~~~~p~~--~~l~s~s~Dg  250 (304)
T 2ynn_A          182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTL--PIIISGSEDG  250 (304)
T ss_dssp             CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSS--SEEEEEETTS
T ss_pred             CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc---------cceeeCCCCCCEEEEEECCCC--CEEEEEcCCC
Confidence            566778877774    5699999999999999998654         678888999999999999998  5899999999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC--EEEEeccCCcEEEEecCC
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS--TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~~dg~i~vw~~~~  293 (294)
                      .|++||+++.+.  ...+.  .|...+.+++|+|++.  ++++|+.|| +.+|++..
T Consensus       251 ~i~iWd~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          251 TLKIWNSSTYKV--EKTLN--VGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN  302 (304)
T ss_dssp             CEEEEETTTCCE--EEEEC--CSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred             eEEEEECCCCce--eeecc--CCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence            999999998863  34444  5667899999999875  577777666 77787753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-44  Score=281.40  Aligned_cols=253  Identities=21%  Similarity=0.323  Sum_probs=209.4

Q ss_pred             cccccCc-eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccc---eecccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590            3 YVDQKEE-SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK---SFVGHGDSINEIRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus         3 ~~~~h~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i   78 (294)
                      .+..|.+ .|++++|+  |+|+ +||+|+.|++|+|||+.+++...   ...+|...|++++|+| ++++|++|+.|++|
T Consensus        10 ~~~~h~~~~v~~l~~s--p~g~-~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v   85 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWN--PAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATT   85 (345)
T ss_dssp             EECCSTTSCEEEEEEC--TTSS-CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             eecCCCCCcEEEEEEC--CCCC-EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-CCCEEEEEECCCcE
Confidence            3557877 99999998  9998 99999999999999998875332   2368999999999999 89999999999999


Q ss_pred             EEEEcCCCc--eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           79 RLWNVQTGI--CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        79 ~vwd~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      ++|++..+.  .+..+.   +|...|.+++|+| ++.+|++|+.|+.|++||++....                    ..
T Consensus        86 ~iw~~~~~~~~~~~~~~---~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~--------------------~~  141 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLE---GHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDE--------------------YE  141 (345)
T ss_dssp             EEEEECCC-EEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSC--------------------EE
T ss_pred             EEEEccCCCeEEEEEcc---CCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCC--------------------eE
Confidence            999998764  455555   7999999999999 889999999999999999986311                    22


Q ss_pred             ceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          157 PVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                      ....+..|...|.+++|+  +++|++++.|+.|++||.+..+       ......+..|...|.+++|+|++  .+|+++
T Consensus       142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~-------~~~~~~~~~h~~~v~~l~~sp~g--~~l~s~  212 (345)
T 3fm0_A          142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD-------WVCCATLEGHESTVWSLAFDPSG--QRLASC  212 (345)
T ss_dssp             EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECTTS--SEEEEE
T ss_pred             EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCC-------EEEEEEecCCCCceEEEEECCCC--CEEEEE
Confidence            345677899999999997  7899999999999999987542       12456778889999999999998  689999


Q ss_pred             cCCCeEEEEeccCCCce-------------eeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          235 NREGKIFVWELQSSPPV-------------LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       235 ~~dg~i~i~d~~~~~~~-------------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +.|+.|++|+.......             ....+. ..|...|.+++|+|++..|++++.|+.|++|+.++
T Consensus       213 s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~  283 (345)
T 3fm0_A          213 SDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP  283 (345)
T ss_dssp             ETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred             eCCCeEEEeccccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence            99999999997543211             111111 13778899999999999999999999999999753

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-44  Score=279.55  Aligned_cols=253  Identities=17%  Similarity=0.231  Sum_probs=196.0

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-------ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      |.+.|++++|+  |+++ +|++|+.|++|+|||+..       .+....+.+|...|++++|+| ++++|++|+.|++|+
T Consensus        57 h~~~v~~v~~s--p~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~  132 (330)
T 2hes_X           57 HKKAIRSVAWR--PHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVW  132 (330)
T ss_dssp             CCSCEEEEEEC--TTSS-EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEE
T ss_pred             ccCCEEEEEEC--CCCC-EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEE
Confidence            99999999998  8998 999999999999999853       345667889999999999999 899999999999999


Q ss_pred             EEEcCCC----ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           80 LWNVQTG----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        80 vwd~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      +||+...    +.+..+.   +|...|.+++|+| ++.+|++|+.|++|++||.+...                     .
T Consensus       133 iwd~~~~~~~~~~~~~~~---~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~---------------------~  187 (330)
T 2hes_X          133 IWETDESGEEYECISVLQ---EHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDD---------------------W  187 (330)
T ss_dssp             EEECCTTCCCCEEEEEEC---CCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTE---------------------E
T ss_pred             EEeccCCCCCeEEEEEec---cCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCC---------------------e
Confidence            9999432    3444555   7999999999999 88999999999999999987521                     2


Q ss_pred             eceEEeecCCCceeecceec----ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-CCCCeeEEEEcccCCcce
Q 022590          156 FPVFIASVHSNYVDCNRWLG----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNA  230 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~  230 (294)
                      .++..+.+|...|.++.|+.    .+|++++.|++|++||++....... ........+.. |...|.+++|++++   +
T Consensus       188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~s~~~---~  263 (330)
T 2hes_X          188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ-QEWVCEAILPDVHKRQVYNVAWGFNG---L  263 (330)
T ss_dssp             EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC-EEEEEEEECCSCCSSCEEEEEECTTS---C
T ss_pred             eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc-ceeEEeeecccccccceEEEEEcCCC---E
Confidence            34667789999999999973    4799999999999999976532110 01122333433 77889999999664   7


Q ss_pred             EEEEcCCCeEEEEeccCCCceeeeeccccccCC-CeEEEEEcc--CCCEEEEeccCCcEEEEecCC
Q 022590          231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKS-PIRQTAMSY--DGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       231 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~v~~~~~s~--~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |++++.||.|++||..+++....... ...|.. .|.+++|+|  ++++|++|+.||.|++||++.
T Consensus       264 l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          264 IASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEeCCCEEEEEEcCCCceEEEecc-ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            99999999999999987642222221 125655 899999999  789999999999999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.4e-43  Score=272.03  Aligned_cols=244  Identities=23%  Similarity=0.418  Sum_probs=210.1

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|.++|++++|+  |+++ +|++|+.||.|++|+..+++....+.+|...|.+++|+| ++++|++|+.|+.|++||+
T Consensus        19 ~~gh~~~v~~~~~s--~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           19 LAGHTKAVSSVKFS--PNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             ECCCSSCEEEEEEC--TTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred             EcccCCcEEEEEEC--CCCC-EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcC-CCCEEEEECCCCEEEEEEC
Confidence            46899999999998  8998 999999999999999999999999999999999999999 8899999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .+++.+..+.   +|...|.+++|+| ++.+|++|+.|+.|++||+++                       ......+..
T Consensus        95 ~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~-----------------------~~~~~~~~~  147 (312)
T 4ery_A           95 SSGKCLKTLK---GHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKT-----------------------GKCLKTLPA  147 (312)
T ss_dssp             TTCCEEEEEE---CCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTT-----------------------CCEEEEECC
T ss_pred             CCCcEEEEEc---CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC-----------------------CEEEEEecC
Confidence            9999998888   6999999999999 889999999999999999987                       344566778


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee-ecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      |..+|.++.|+  +++|++++.|+.|++||+++++         .+..+ ..+...+..++|+|++  .++++++.||.|
T Consensus       148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~d~~i  216 (312)
T 4ery_A          148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---------CLKTLIDDDNPPVSFVKFSPNG--KYILAATLDNTL  216 (312)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------EEEEECCSSCCCEEEEEECTTS--SEEEEEETTTEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------eeeEEeccCCCceEEEEECCCC--CEEEEEcCCCeE
Confidence            99999999997  7899999999999999998764         23333 3455678999999999  689999999999


Q ss_pred             EEEeccCCCceeeeeccccccCC---CeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          241 FVWELQSSPPVLIARLSHAQSKS---PIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++||+++.+.  ...+.  .|..   .+......+++++|++|+.||.|++||+++
T Consensus       217 ~iwd~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~  268 (312)
T 4ery_A          217 KLWDYSKGKC--LKTYT--GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT  268 (312)
T ss_dssp             EEEETTTTEE--EEEEC--SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred             EEEECCCCcE--EEEEE--ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence            9999998753  33333  3322   233333446889999999999999999875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=9.5e-45  Score=284.35  Aligned_cols=286  Identities=40%  Similarity=0.780  Sum_probs=225.3

Q ss_pred             ccCceeEEEEEeecCC--CceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVD--GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .|.+.|++++|++...  |+ +|++|+.||.|++||+.+++.+..+.+|...|++++|+|.++.+|++|+.||.|++||+
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~  145 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHP-LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI  145 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCE-EEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             CCCCcEEEEEeccCCCCCCC-EEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEe
Confidence            3678899999994432  66 99999999999999999999999999999999999999977889999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccce--eecCCCC--CCC-Cceeeece
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF--TWTDLPS--KFP-TKYVQFPV  158 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~~~~--~~~-~~~~~~~~  158 (294)
                      .+++.+..+....+|...|.+++|+| ++.+|++++.||.|++||++..........  .+.....  ... ........
T Consensus       146 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (366)
T 3k26_A          146 QTDTLVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF  224 (366)
T ss_dssp             TTTEEEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred             ecCeEEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence            99998888844347999999999999 889999999999999999997543221110  1111000  000 01111223


Q ss_pred             EEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCC-----CCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590          159 FIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS-----PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      .....|...|.++.|+++++++++.|+.|++||+++....     ........+..+..+...+.+++|+|+..+.+|++
T Consensus       225 ~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~  304 (366)
T 3k26_A          225 STRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL  304 (366)
T ss_dssp             EECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE
T ss_pred             ccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE
Confidence            4455699999999999999999999999999999876531     11122345777888889999999999932279999


Q ss_pred             EcCCCeEEEEeccCCCcee--eeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          234 GNREGKIFVWELQSSPPVL--IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |+.||.|++||+.+++...  ...+....|..+|++++|+|++++|++++.||.|++||+.+
T Consensus       305 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          305 GNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             ECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            9999999999999886542  22333223378999999999999999999999999999863

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.7e-44  Score=281.51  Aligned_cols=254  Identities=20%  Similarity=0.344  Sum_probs=207.8

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      .|.+++|+  |+|+ +|++|+.||.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||+++++..
T Consensus       125 ~v~~v~~s--~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~  200 (393)
T 1erj_A          125 YIRSVCFS--PDGK-FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS  200 (393)
T ss_dssp             BEEEEEEC--TTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eEEEEEEC--CCCC-EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCeeE
Confidence            48899997  9998 999999999999999999999999999999999999999 8899999999999999999999988


Q ss_pred             EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCcee
Q 022590           90 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  169 (294)
Q Consensus        90 ~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (294)
                      ..+.    +...+.+++|+|.++.+|++|+.|+.|++||+++.......                ........+|...|.
T Consensus       201 ~~~~----~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~----------------~~~~~~~~~h~~~v~  260 (393)
T 1erj_A          201 LTLS----IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL----------------DSENESGTGHKDSVY  260 (393)
T ss_dssp             EEEE----CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE----------------C------CCCSSCEE
T ss_pred             EEEE----cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee----------------cccccCCCCCCCCEE
Confidence            8776    77789999999978899999999999999999873211100                011122357899999


Q ss_pred             eccee--cceEEEeeCCCeEEEecCCCCCCCCCC---CCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          170 CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE---GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       170 ~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      +++|+  +++|++++.|+.|++||++........   ........+..|...+.+++|+|++  .+|++|+.||.|++||
T Consensus       261 ~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~sgs~D~~v~iwd  338 (393)
T 1erj_A          261 SVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND--EYILSGSKDRGVLFWD  338 (393)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG--CEEEEEETTSEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC--CEEEEEeCCCeEEEEE
Confidence            99997  789999999999999999875432111   1123455677888899999999998  6899999999999999


Q ss_pred             ccCCCceeeeeccccccCCCeEEEEEcc------CCCEEEEeccCCcEEEEecCC
Q 022590          245 LQSSPPVLIARLSHAQSKSPIRQTAMSY------DGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++++++.  ..+.  +|...|.+++|++      ++++|++|+.||.|++|+++.
T Consensus       339 ~~~~~~~--~~l~--~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          339 KKSGNPL--LMLQ--GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             TTTCCEE--EEEE--CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             CCCCeEE--EEEC--CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9988743  3333  7889999999986      688999999999999999863

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.7e-44  Score=277.03  Aligned_cols=248  Identities=17%  Similarity=0.320  Sum_probs=203.9

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|...|++++|+  |++. ++++|+.|++|++||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+
T Consensus        72 l~~h~~~V~~~~~~--~~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           72 LTGHNHFVSDLALS--QENC-FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             ECCCSSCEEEEEEC--SSTT-EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEES
T ss_pred             hccCCCceEEEEEC--CCCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEec
Confidence            45799999999997  8898 999999999999999999999999999999999999999 8899999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCC----------ceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDI----------YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~----------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      . +..........+|...|.+++|+| ++          .+|++++.||.|++||...                      
T Consensus       148 ~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------------------  203 (343)
T 2xzm_R          148 L-GECKFSSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNF----------------------  203 (343)
T ss_dssp             S-SCEEEECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTT----------------------
T ss_pred             c-CCceeeeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCC----------------------
Confidence            7 444444443346889999999999 54          6899999999999999543                      


Q ss_pred             eeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590          154 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  231 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  231 (294)
                        .....+..|...|.+++|+  +++|++++.|+.|++||++....        ....+ .+...+.+++|+|++  .++
T Consensus       204 --~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~--------~~~~~-~~~~~v~~v~~sp~~--~~l  270 (343)
T 2xzm_R          204 --QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTY--------PQREF-DAGSTINQIAFNPKL--QWV  270 (343)
T ss_dssp             --EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSS--------CSEEE-ECSSCEEEEEECSSS--CEE
T ss_pred             --ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcc--------cceee-cCCCcEEEEEECCCC--CEE
Confidence              2345677899999999997  78999999999999999954332        12222 234569999999998  456


Q ss_pred             EEEcCCCeEEEEeccCCCceeeeecc---------ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          232 AIGNREGKIFVWELQSSPPVLIARLS---------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       232 ~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++ +.|+.|++||+.+.+......+.         ..+|...|.+++|+|+|++|++|+.||.|++|++++
T Consensus       271 a~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          271 AV-GTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             EE-EESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             EE-ECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            54 46788999999887644322222         125778899999999999999999999999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.9e-44  Score=279.10  Aligned_cols=244  Identities=17%  Similarity=0.194  Sum_probs=194.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-----------ccccceecccCcceEEEEeCCCCCceEEEeeC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-----------EKLHKSFVGHGDSINEIRTQPLKPSLVVSASK   74 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   74 (294)
                      .|+..|.+++|+  |||+ +|++++ |+++++||...           .........|...|.+++|+| + ..|++|+.
T Consensus        28 ~~~~~v~~~~fs--~dG~-~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d-~~l~~~s~  101 (344)
T 4gqb_B           28 CMERQLEAARYR--SDGA-LLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG-E-RGILVASD  101 (344)
T ss_dssp             SCCSEEEEEEEC--TTSC-EEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET-T-TEEEEEET
T ss_pred             cccCCEEEEEEC--CCCC-EEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC-C-CeEEEEEC
Confidence            567889999997  9998 787776 77788886321           111122234677899999999 5 46889999


Q ss_pred             CCcEEEEEcCCCceEEEeec-cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           75 DESVRLWNVQTGICILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        75 dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      ||+|++||+.+++.+..+.. ..+|...|++++|+| ++.+|++|+.|++|++||+++                      
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~----------------------  158 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQ----------------------  158 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT----------------------
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCC----------------------
Confidence            99999999998876544331 236999999999999 899999999999999999998                      


Q ss_pred             eeeceEEeecCCCceeeccee--c-ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee--ecCCCCeeEEEEcccCCc
Q 022590          154 VQFPVFIASVHSNYVDCNRWL--G-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY--PVPECDIWFIKFSCDFHY  228 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~  228 (294)
                       ...+..+.+|...|.++.|+  + .+|++++.|+.|++||+++++.         ...+  ..+...+.+++|+|++. 
T Consensus       159 -~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~~-  227 (344)
T 4gqb_B          159 -QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP---------ASQIGCSAPGYLPTSLAWHPQQS-  227 (344)
T ss_dssp             -TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC---------EEECC----CCCEEEEEECSSCT-
T ss_pred             -CcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce---------eeeeecceeeccceeeeecCCCC-
Confidence             45677888999999999997  3 5789999999999999997752         2222  33456788999999765 


Q ss_pred             ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecCC
Q 022590          229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~  293 (294)
                      .++++|+.||.|++||+++++..  ..+.  +|...|++++|+|++ ++|++|+.||.|+|||+++
T Consensus       228 ~~l~sg~~dg~v~~wd~~~~~~~--~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~  289 (344)
T 4gqb_B          228 EVFVFGDENGTVSLVDTKSTSCV--LSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL  289 (344)
T ss_dssp             TEEEEEETTSEEEEEESCC--CC--EEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred             cceEEeccCCcEEEEECCCCcEE--EEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence            68999999999999999988643  3333  788999999999998 5899999999999999874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-43  Score=276.30  Aligned_cols=240  Identities=22%  Similarity=0.313  Sum_probs=207.4

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc------cccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE------KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      .|...|.+++|+  |+|. ++++|+.|+.+++|++...      .....+.+|...|.+++|+| ++..|++++.|++|+
T Consensus       104 ~~~~~v~~~~~s--p~g~-~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~  179 (354)
T 2pbi_B          104 MPCTWVMACAYA--PSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCA  179 (354)
T ss_dssp             CSSSCCCEEEEC--TTSS-EEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEE
T ss_pred             cCCCCEEEEEEC--CCCC-EEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEE
Confidence            567788999997  9998 9999999999999998643      34456778999999999999 888999999999999


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecC-CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      +||+++++.+..+.   +|...|.+++|+|. ++.+|++|+.||.|++||+++                       ....
T Consensus       180 lwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-----------------------~~~~  233 (354)
T 2pbi_B          180 LWDVESGQLLQSFH---GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-----------------------GQCV  233 (354)
T ss_dssp             EEETTTCCEEEEEE---CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-----------------------CCEE
T ss_pred             EEeCCCCeEEEEEc---CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-----------------------CcEE
Confidence            99999999999888   79999999999884 357999999999999999998                       4456


Q ss_pred             EEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec--CCCCeeEEEEcccCCcceEEEE
Q 022590          159 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                      ..+..|...|.+++|+  +++|++++.|+.|++||++...         .+..+..  +...+.+++|+|++  .+|++|
T Consensus       234 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~---------~~~~~~~~~~~~~~~~~~~s~~g--~~l~~g  302 (354)
T 2pbi_B          234 QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR---------EVAIYSKESIIFGASSVDFSLSG--RLLFAG  302 (354)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------EEEEECCTTCCSCEEEEEECTTS--SEEEEE
T ss_pred             EEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---------EEEEEcCCCcccceeEEEEeCCC--CEEEEE
Confidence            6778899999999997  8899999999999999998653         2333322  23468899999998  699999


Q ss_pred             cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          235 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       235 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      +.|+.|++||+.+++.  ...+.  +|...|++++|+|+|++|++|+.||.|++|+
T Consensus       303 ~~d~~i~vwd~~~~~~--~~~l~--~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          303 YNDYTINVWDVLKGSR--VSILF--GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             ETTSCEEEEETTTCSE--EEEEC--CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             ECCCcEEEEECCCCce--EEEEE--CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999988763  33333  7889999999999999999999999999996

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-43  Score=273.87  Aligned_cols=252  Identities=22%  Similarity=0.360  Sum_probs=200.8

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc--ccccee-cc-cCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE--KLHKSF-VG-HGDSINEIRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~-~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i   78 (294)
                      .++.|.++|++++|+  |+   +|++|+.|+.|++||+.++  +....+ .+ |...|++++|+| ++++|++|+.|++|
T Consensus         9 ~~~~h~~~v~~~~~s--~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v   82 (330)
T 2hes_X            9 SLKLYKEKIWSFDFS--QG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTV   82 (330)
T ss_dssp             EEECCSSCEEEEEEE--TT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             eeccCCCceeeeccC--CC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcE
Confidence            356899999999997  55   7999999999999999875  344455 34 999999999999 88999999999999


Q ss_pred             EEEEcCC-------CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           79 RLWNVQT-------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        79 ~vwd~~~-------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      ++||+..       .+.+..+.   +|...|.+++|+| ++.+|++|+.|++|++||++....                 
T Consensus        83 ~iw~~~~~~~~~~~~~~~~~~~---~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~-----------------  141 (330)
T 2hes_X           83 SIWAKEESADRTFEMDLLAIIE---GHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGE-----------------  141 (330)
T ss_dssp             EEEEC-------CCCEEEEEEC-------CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCC-----------------
T ss_pred             EEEEcccCcCccccceeEEEEc---CCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCC-----------------
Confidence            9999853       23444555   7999999999999 889999999999999999964210                 


Q ss_pred             ceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                        ....+..+..|...|.++.|+  +++|++++.|+.|++||.+.+.       ...+..+..|...|.+++|+|++...
T Consensus       142 --~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~  212 (330)
T 2hes_X          142 --EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD-------WECVAVLNGHEGTVWSSDFDKTEGVF  212 (330)
T ss_dssp             --CCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred             --CeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC-------eeEEEEccCCCCcEEEEEecCCCCee
Confidence              012355678899999999997  7899999999999999987541       23567788899999999999995446


Q ss_pred             eEEEEcCCCeEEEEeccCCCc------eeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          230 AAAIGNREGKIFVWELQSSPP------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +|++|+.|+.|++||++....      .....+. ..|...|.+++|++++ +|++++.||.|++||..
T Consensus       213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~  279 (330)
T 2hes_X          213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEV  279 (330)
T ss_dssp             EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEE
T ss_pred             EEEEEeCCCeEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcC
Confidence            899999999999999976421      1112221 2378899999999765 89999999999999975

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-44  Score=280.10  Aligned_cols=255  Identities=17%  Similarity=0.214  Sum_probs=217.3

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC--CccccceecccCcceEEEEeCCCC--CceEEEeeCCCc
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDES   77 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~   77 (294)
                      ..++.|.++|++++|+  |+++ +|++|+.||.|++||+.  +++.+..+.+|..+|++++|++ +  +.+|++|+.||.
T Consensus         5 ~~~~~h~~~v~~~~~s--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            5 VIANAHNELIHDAVLD--YYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGK   80 (379)
T ss_dssp             CCEEECCCCEEEEEEC--SSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSC
T ss_pred             EEecCCcccEEEEEEc--CCCC-EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCE
Confidence            3567999999999998  8998 99999999999999998  5677788999999999999997 5  899999999999


Q ss_pred             EEEEEcCCCc--eEEEeeccCCCCCceeEEEEecCC--CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           78 VRLWNVQTGI--CILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        78 i~vwd~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      |++||+.+++  .+..+.   .|...|.+++|+| +  +.+|++++.|+.|++||++...                    
T Consensus        81 v~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~--------------------  136 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHA---VHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENG--------------------  136 (379)
T ss_dssp             EEEEEEETTEEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTS--------------------
T ss_pred             EEEEEcCCCceeEeeeec---CCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCC--------------------
Confidence            9999999886  555555   6999999999999 6  8899999999999999998732                    


Q ss_pred             eeeceEEeecCCCceeeccee---------------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCee
Q 022590          154 VQFPVFIASVHSNYVDCNRWL---------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW  218 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~~~---------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~  218 (294)
                       ......+..|...|.++.|+               ++++++++.|+.|++||++....     .......+..|...+.
T Consensus       137 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~h~~~v~  210 (379)
T 3jrp_A          137 -TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVR  210 (379)
T ss_dssp             -CCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEE
T ss_pred             -ceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc-----ceeeEEEEecccCcEe
Confidence             12334567789999999996               47899999999999999987643     2335567778889999


Q ss_pred             EEEEccc---CCcceEEEEcCCCeEEEEeccCCCceee-eeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          219 FIKFSCD---FHYNAAAIGNREGKIFVWELQSSPPVLI-ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       219 ~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +++|+|+   +  .+|++++.||.|++||++..+.... .......|...|.+++|+|++++|++++.||.|++|+++
T Consensus       211 ~~~~sp~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          211 DVAWSPTVLLR--SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEEECCCCSSS--EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             EEEECCCCCCC--CeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            9999999   6  6999999999999999998753322 223334577899999999999999999999999999986

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.3e-43  Score=272.49  Aligned_cols=247  Identities=21%  Similarity=0.402  Sum_probs=202.4

Q ss_pred             cccccCceeEEEEEee---cC-CCceEEEEeecCCeEEEEEcCCc-------cccceecccCcceEEEEeCCCCCceEEE
Q 022590            3 YVDQKEESFYTVSWAC---NV-DGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVS   71 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~---~~-~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s   71 (294)
                      .++.|.+.|++++|.+   ++ +++ +|++|+.|++|++||+.+.       .+...+.+|...|++++|+| ++.++++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~-~~~~l~s   93 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ-ENCFAIS   93 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS-STTEEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC-CCCEEEE
Confidence            4668999999999943   24 777 9999999999999998753       34567889999999999999 8899999


Q ss_pred             eeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           72 ASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        72 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      |+.|++|++||+++++.+..+.   +|...|.+++|+| ++.+|++++.|+.|++||+.....                 
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~---~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~~-----------------  152 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFV---GHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECK-----------------  152 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEE---CCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCEE-----------------
T ss_pred             EcCCCcEEEEECCCCcEEEEEc---CCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCce-----------------
Confidence            9999999999999999998888   7999999999999 888999999999999999974110                 


Q ss_pred             ceeeeceEEeecCCCceeecceec------------ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWLG------------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF  219 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~~------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~  219 (294)
                          ........|...|.++.|++            .+|++++.|+.|++||.+.          .....+..|...|.+
T Consensus       153 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          153 ----FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----------QIRYTFKAHESNVNH  218 (343)
T ss_dssp             ----EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----------EEEEEEECCSSCEEE
T ss_pred             ----eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC----------ceeEEEcCccccceE
Confidence                01111235778888888862            5899999999999999432          255677888999999


Q ss_pred             EEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          220 IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       220 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++|+|++  .+|++|+.||.|++||+....... ..+   .+...|.+++|+|++++|+++ .|+.|++||+.+
T Consensus       219 ~~~s~~g--~~l~sgs~dg~v~iwd~~~~~~~~-~~~---~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~  285 (343)
T 2xzm_R          219 LSISPNG--KYIATGGKDKKLLIWDILNLTYPQ-REF---DAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMT  285 (343)
T ss_dssp             EEECTTS--SEEEEEETTCEEEEEESSCCSSCS-EEE---ECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSS
T ss_pred             EEECCCC--CEEEEEcCCCeEEEEECCCCcccc-eee---cCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCC
Confidence            9999999  689999999999999995543211 222   233569999999999887755 677899999864

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.4e-44  Score=278.19  Aligned_cols=247  Identities=19%  Similarity=0.259  Sum_probs=195.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeec------CCeEEEEEcCCccccc----eecccCcceEEEEeCCCCCceEEEeeCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGI------NGIIRVIDVSNEKLHK----SFVGHGDSINEIRTQPLKPSLVVSASKD   75 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~l~s~~~d   75 (294)
                      .|++.|++++|+  |||+ +||+|+.      |+.|++|+..++....    ...+|...|++++|+| ++. +++++.|
T Consensus        40 ~H~~~V~~v~fS--pDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~-d~~-~l~~s~d  114 (357)
T 4g56_B           40 CMEVQIGAVRYR--RDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVS-EKG-ILVASDS  114 (357)
T ss_dssp             CCCSEEEEEEEC--SSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEET-TTE-EEEEETT
T ss_pred             cccCCEEEEEEC--CCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcC-CCC-EEEEECC
Confidence            589999999998  9999 9999997      7889999987765433    3356889999999999 654 5677889


Q ss_pred             CcEEEEEcCCCceEEEee-ccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590           76 ESVRLWNVQTGICILIFA-GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  154 (294)
Q Consensus        76 g~i~vwd~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (294)
                      |+|++||+.+++...... ...+|...|++++|+| ++.+|++|+.|+.|++||+++                       
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~-----------------------  170 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQ-----------------------  170 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTT-----------------------
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCC-----------------------
Confidence            999999998876543221 1226999999999999 889999999999999999998                       


Q ss_pred             eeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590          155 QFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  231 (294)
Q Consensus       155 ~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  231 (294)
                      ......+..|...|.+++|+   ..++++++.|+.|++||+++++...       ......+...+.+++|+|++. .+|
T Consensus       171 ~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~-------~~~~~~~~~~v~~v~~sp~~~-~~l  242 (357)
T 4g56_B          171 KAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPAT-------RIDFCASDTIPTSVTWHPEKD-DTF  242 (357)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBC-------BCCCTTCCSCEEEEEECTTST-TEE
T ss_pred             CcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceee-------eeeeccccccccchhhhhccc-ceE
Confidence            45567778899999999996   3478999999999999999875311       112234556789999999865 689


Q ss_pred             EEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecCC
Q 022590          232 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++|+.|+.|++||+++.+..  ..+.  .|...|++++|+|++ ++|++|+.||.|+|||+++
T Consensus       243 a~g~~d~~i~~wd~~~~~~~--~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~  301 (357)
T 4g56_B          243 ACGDETGNVSLVNIKNPDSA--QTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF  301 (357)
T ss_dssp             EEEESSSCEEEEESSCGGGC--EEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred             EEeecccceeEEECCCCcEe--EEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence            99999999999999987643  3333  777899999999987 6899999999999999875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.1e-43  Score=292.73  Aligned_cols=248  Identities=20%  Similarity=0.274  Sum_probs=206.6

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCC----C
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKD----E   76 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g   76 (294)
                      .+.+|.+.|++++|+  |+|+ +||+|+.||+|+|||+.+++  ....+.+|.++|.+++|+| ++++|++++.+    +
T Consensus        54 ~~~~h~~~v~~~~~s--pdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~-dg~~l~~~~~~~~~~~  129 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTS--PSGY-YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFG  129 (611)
T ss_dssp             EECCCSSCEEEEEEC--TTSS-EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSE
T ss_pred             EecCCCCceEEEEEC--CCCc-EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECC-CCCEEEEEECCCCcee
Confidence            356899999999998  9999 99999999999999987543  3457788999999999999 88889888765    4


Q ss_pred             cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      +|++||  .++....+.   +|...|++++|+|++...|++|+.|++|++||...                       ..
T Consensus       130 ~v~~wd--~~~~~~~l~---gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-----------------------~~  181 (611)
T 1nr0_A          130 HVFLFD--TGTSNGNLT---GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-----------------------FK  181 (611)
T ss_dssp             EEEETT--TCCBCBCCC---CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-----------------------BE
T ss_pred             EEEEee--CCCCcceec---CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-----------------------Ce
Confidence            678887  455555555   79999999999994445799999999999999876                       33


Q ss_pred             ceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee-------cCCCCeeEEEEcccCC
Q 022590          157 PVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP-------VPECDIWFIKFSCDFH  227 (294)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~  227 (294)
                      ....+.+|...|.+++|+  +++|++++.|+.|++||+.+++         ....+.       .|...|.+++|+|++ 
T Consensus       182 ~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~---------~~~~~~~~~~~~~~h~~~V~~v~~spdg-  251 (611)
T 1nr0_A          182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT---------KTGVFEDDSLKNVAHSGSVFGLTWSPDG-  251 (611)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------EEEECBCTTSSSCSSSSCEEEEEECTTS-
T ss_pred             EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc---------EeeeeccccccccccCCCEEEEEECCCC-
Confidence            456678899999999997  7899999999999999998765         233332       678899999999998 


Q ss_pred             cceEEEEcCCCeEEEEeccCCCceeeee---------------------------------------ccccccCCCeEEE
Q 022590          228 YNAAAIGNREGKIFVWELQSSPPVLIAR---------------------------------------LSHAQSKSPIRQT  268 (294)
Q Consensus       228 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------------------------------~~~~~~~~~v~~~  268 (294)
                       .+|++++.|+.|++||+++++......                                       ....+|...|+++
T Consensus       252 -~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l  330 (611)
T 1nr0_A          252 -TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL  330 (611)
T ss_dssp             -SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred             -CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEE
Confidence             689999999999999998765322111                                       0123688899999


Q ss_pred             EEccCCCEEEEeccCCcEEEEecCC
Q 022590          269 AMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       269 ~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +|+|+|++|++++.||.|++||+.+
T Consensus       331 ~~spdg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          331 SSSADGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EEeCCCCEEEEEeCCCcEEEEECCC
Confidence            9999999999999999999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2e-42  Score=268.60  Aligned_cols=250  Identities=20%  Similarity=0.337  Sum_probs=210.0

Q ss_pred             cccccCceeEEEEEeecCC-CceEEEEeecCCeEEEEEcCCcc-----ccceecccCcceEEEEeCCCCCceEEEeeCCC
Q 022590            3 YVDQKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDE   76 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg   76 (294)
                      .|++|.+.|++|+|+  |+ ++ +|++|+.||+|+|||+.+.+     +...+.+|...|++++|+| ++++|++++.|+
T Consensus        33 tL~GH~~~V~~v~~s--p~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~  108 (340)
T 4aow_A           33 TLKGHNGWVTQIATT--PQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS-DGQFALSGSWDG  108 (340)
T ss_dssp             EECCCSSCEEEEEEC--TTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             EECCccCCEEEEEEe--CCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC-CCCEEEEEcccc
Confidence            367899999999998  76 45 99999999999999987654     4567789999999999999 899999999999


Q ss_pred             cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      .|++|+...........   .+...+..+.+++ .+.+|++++.|+.+++||+...                      ..
T Consensus       109 ~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~----------------------~~  162 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFV---GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGV----------------------CK  162 (340)
T ss_dssp             EEEEEETTTTEEEEEEE---CCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSC----------------------EE
T ss_pred             cceEEeecccceeeeec---CCCCceeEEEEee-cCccceeecCCCeEEEEEeCCC----------------------ce
Confidence            99999999888887777   5888899999999 8888999999999999998763                      22


Q ss_pred             ceEEeecCCCceeeccee----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          157 PVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      .......|...+..+.|+    ..++++++.|+.|++||+++.+         ....+..|...|.+++|+|++  .+|+
T Consensus       163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~---------~~~~~~~h~~~v~~~~~s~~~--~~l~  231 (340)
T 4aow_A          163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK---------LKTNHIGHTGYLNTVTVSPDG--SLCA  231 (340)
T ss_dssp             EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEECTTS--SEEE
T ss_pred             EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc---------eeeEecCCCCcEEEEEECCCC--CEEE
Confidence            344556788889988885    4578899999999999998654         677778889999999999998  6899


Q ss_pred             EEcCCCeEEEEeccCCCceeee--------------------------------------ec-------cccccCCCeEE
Q 022590          233 IGNREGKIFVWELQSSPPVLIA--------------------------------------RL-------SHAQSKSPIRQ  267 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~~~~~--------------------------------------~~-------~~~~~~~~v~~  267 (294)
                      +|+.||.|++||+++.+.....                                      .+       ....|...|++
T Consensus       232 s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~  311 (340)
T 4aow_A          232 SGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTS  311 (340)
T ss_dssp             EEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEE
T ss_pred             EEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEE
Confidence            9999999999998765321110                                      00       01246678999


Q ss_pred             EEEccCCCEEEEeccCCcEEEEecCC
Q 022590          268 TAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       268 ~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++|+|+|++|++|+.||.|+|||+++
T Consensus       312 l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          312 LAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            99999999999999999999999875

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=5.6e-43  Score=291.22  Aligned_cols=273  Identities=15%  Similarity=0.171  Sum_probs=209.4

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-------ccCcceEEEEeCCCCCceEEEeeCCC
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-------GHGDSINEIRTQPLKPSLVVSASKDE   76 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~s~~~dg   76 (294)
                      +..|.+.|++++|+  |+|+ +|++|+.|++|++||+.+++....+.       +|.+.|.+++|+| ++++|++++.|+
T Consensus       186 l~~H~~~V~~v~fs--pdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~  261 (611)
T 1nr0_A          186 FGEHTKFVHSVRYN--PDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADK  261 (611)
T ss_dssp             ECCCSSCEEEEEEC--TTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             eccccCceEEEEEC--CCCC-EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCC
Confidence            45899999999998  9998 99999999999999999998877774       7999999999999 899999999999


Q ss_pred             cEEEEEcCCCceEEEee----------------------------------------ccCCCCCceeEEEEecCCCceEE
Q 022590           77 SVRLWNVQTGICILIFA----------------------------------------GAGGHRNEVLSVDFHPSDIYRIA  116 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~----------------------------------------~~~~~~~~v~~l~~~~~~~~~l~  116 (294)
                      +|++||+.+++.+..+.                                        ...+|...|++++|+| ++.+|+
T Consensus       262 ~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~  340 (611)
T 1nr0_A          262 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLF  340 (611)
T ss_dssp             EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEE
T ss_pred             eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEE
Confidence            99999999877655432                                        1237999999999999 999999


Q ss_pred             eeecCCcEEEEecccccccccc---------ceeecC------------------CCCCCCC----------cee-----
Q 022590          117 SCGMDNTVKIWSMKEFWTYVEK---------SFTWTD------------------LPSKFPT----------KYV-----  154 (294)
Q Consensus       117 ~~~~dg~i~~wd~~~~~~~~~~---------~~~~~~------------------~~~~~~~----------~~~-----  154 (294)
                      +++.|++|++||+.+.......         .+.+..                  .......          ...     
T Consensus       341 s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s  420 (611)
T 1nr0_A          341 SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS  420 (611)
T ss_dssp             EEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEEC
T ss_pred             EEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEe
Confidence            9999999999999864322110         000000                  0000000          000     


Q ss_pred             ------------------eeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC
Q 022590          155 ------------------QFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE  214 (294)
Q Consensus       155 ------------------~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  214 (294)
                                        ...... ..|...+.+++|+  +++|++|+.|+.|++||+....       ...... ..|.
T Consensus       421 ~dg~~~~~~~~~~v~~~~~~~~~~-~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-------~~~~~~-~~h~  491 (611)
T 1nr0_A          421 ADGDIAVAACYKHIAIYSHGKLTE-VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-------VSEVKT-IVHP  491 (611)
T ss_dssp             TTSSCEEEEESSEEEEEETTEEEE-EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-------EEEEEE-EECS
T ss_pred             CCCcEEEEEeCceEEEEeCCceee-eecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc-------eeeeec-cCCC
Confidence                              000111 1255678888887  8899999999999999997542       112233 5678


Q ss_pred             CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          215 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       215 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ..|.+++|+|++  .+|++++.|+.|++|++.+... .........|...|.+++|+|+|++|++|+.|+.|++||++.
T Consensus       492 ~~v~~v~fspdg--~~las~s~d~~v~~w~~~~~~~-~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~  567 (611)
T 1nr0_A          492 AEITSVAFSNNG--AFLVATDQSRKVIPYSVANNFE-LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK  567 (611)
T ss_dssp             SCEEEEEECTTS--SEEEEEETTSCEEEEEGGGTTE-ESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             CceEEEEECCCC--CEEEEEcCCCCEEEEEcCCCCc-eeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCC
Confidence            899999999999  6999999999999999987321 111111224889999999999999999999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.6e-42  Score=273.95  Aligned_cols=244  Identities=19%  Similarity=0.371  Sum_probs=199.6

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCc------------------ceEEEEeCCCCCc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD------------------SINEIRTQPLKPS   67 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~~~   67 (294)
                      +|.+.|++++|+  |+|+ +||+|+ ++.+++|++.+++.+..+..|..                  .|++++|+| +++
T Consensus        62 ~h~~~V~~v~fs--pdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-dg~  136 (393)
T 1erj_A           62 DHTSVVCCVKFS--NDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGK  136 (393)
T ss_dssp             ECSSCCCEEEEC--TTSS-EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSS
T ss_pred             CCCCEEEEEEEC--CCCC-EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECC-CCC
Confidence            599999999998  9999 899876 67999999999988877765532                  499999999 899


Q ss_pred             eEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCC
Q 022590           68 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS  147 (294)
Q Consensus        68 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  147 (294)
                      +|++|+.|++|++||+.+++.+..+.   +|...|.+++|+| ++.+|++++.|++|++||+++..              
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~---~h~~~v~~~~~~p-~~~~l~s~s~d~~v~iwd~~~~~--------------  198 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQ---GHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQ--------------  198 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE--------------
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEc---cCCCCEEEEEEcC-CCCEEEEecCCCcEEEEECCCCe--------------
Confidence            99999999999999999999888887   7999999999999 88899999999999999998732              


Q ss_pred             CCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee-------ecCCCCe
Q 022590          148 KFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-------PVPECDI  217 (294)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~i  217 (294)
                               ....+ .+...+.+++|+   +++|++++.|+.|++||++++.         .+..+       ..|...|
T Consensus       199 ---------~~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~---------~~~~~~~~~~~~~~h~~~v  259 (393)
T 1erj_A          199 ---------CSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF---------LVERLDSENESGTGHKDSV  259 (393)
T ss_dssp             ---------EEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC---------EEEEEC------CCCSSCE
T ss_pred             ---------eEEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------EEEeecccccCCCCCCCCE
Confidence                     12222 255668888875   6799999999999999998765         22222       4677889


Q ss_pred             eEEEEcccCCcceEEEEcCCCeEEEEeccCCCcee--------eeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEE
Q 022590          218 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL--------IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW  289 (294)
Q Consensus       218 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw  289 (294)
                      .+++|+|++  .+|++|+.||.|++||+++.....        .......+|...|.+++|+|++++|++|+.||.|++|
T Consensus       260 ~~v~~~~~g--~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iw  337 (393)
T 1erj_A          260 YSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW  337 (393)
T ss_dssp             EEEEECTTS--SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEE
T ss_pred             EEEEECCCC--CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            999999998  689999999999999998643211        0111223788899999999999999999999999999


Q ss_pred             ecCC
Q 022590          290 DAIP  293 (294)
Q Consensus       290 ~~~~  293 (294)
                      |+++
T Consensus       338 d~~~  341 (393)
T 1erj_A          338 DKKS  341 (393)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            9864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.3e-41  Score=261.04  Aligned_cols=244  Identities=25%  Similarity=0.443  Sum_probs=206.0

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|...|.+++|+  |+++ +|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.|++|++||+
T Consensus        61 ~~~h~~~v~~~~~~--~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~  136 (312)
T 4ery_A           61 ISGHKLGISDVAWS--SDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDV  136 (312)
T ss_dssp             ECCCSSCEEEEEEC--TTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEET
T ss_pred             hccCCCceEEEEEc--CCCC-EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Confidence            45789999999998  8998 999999999999999999999999999999999999999 8899999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE-ee
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI-AS  162 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  162 (294)
                      ++++.+..+.   .|..+|.+++|+| ++.+|++++.||.|++||+++..                       .... ..
T Consensus       137 ~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-----------------------~~~~~~~  189 (312)
T 4ery_A          137 KTGKCLKTLP---AHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQ-----------------------CLKTLID  189 (312)
T ss_dssp             TTCCEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCC-----------------------EEEEECC
T ss_pred             CCCEEEEEec---CCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc-----------------------eeeEEec
Confidence            9999888887   6999999999999 88999999999999999998732                       2222 23


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCee--EEEEcccCCcceEEEEcCCC
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW--FIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~l~~~~~dg  238 (294)
                      .+...+..++|+  +++|++++.|+.|++||+++++         .+..+..+.....  ...+++.+. .++++|+.||
T Consensus       190 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~dg  259 (312)
T 4ery_A          190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK---------CLKTYTGHKNEKYCIFANFSVTGG-KWIVSGSEDN  259 (312)
T ss_dssp             SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTE---------EEEEECSSCCSSSCCCEEEECSSS-CEEEECCTTS
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------EEEEEEecCCceEEEEEEEEeCCC-cEEEEECCCC
Confidence            456678888886  7899999999999999998664         4555555544322  233443332 6899999999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec--cCCcEEEEecC
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC--EDGAIWRWDAI  292 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~vw~~~  292 (294)
                      .|++||+++.+  ....+.  +|...|.+++|+|++++|++++  .|+.|++|+.+
T Consensus       260 ~i~vwd~~~~~--~~~~~~--~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          260 LVYIWNLQTKE--IVQKLQ--GHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             CEEEEETTTCC--EEEEEC--CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEEEEECCCch--hhhhhh--ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            99999999876  334444  7889999999999999999986  69999999964

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.9e-42  Score=268.40  Aligned_cols=265  Identities=18%  Similarity=0.292  Sum_probs=211.9

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cccceecccCcceEEEEeCCC-CCceEEEeeCCCc
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDES   77 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~   77 (294)
                      ++..|.+.|++++|+  |+++ +|++|+.||.|++||+.++    +....+.+|..+|++++|+|. ++.+|++|+.||+
T Consensus         6 ~~~gH~~~v~~~~~~--~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYD--FYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             EECCCSSCEEEEEEC--SSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cCcccccceeEEEEc--CCCC-EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            456899999999998  8998 9999999999999999876    456677899999999999994 3789999999999


Q ss_pred             EEEEEcCCC---------ceEEEeeccCCCCCceeEEEEecCC--CceEEeeecCCcEEEEeccccccccccceeecCCC
Q 022590           78 VRLWNVQTG---------ICILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP  146 (294)
Q Consensus        78 i~vwd~~~~---------~~~~~~~~~~~~~~~v~~l~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  146 (294)
                      |++||+.++         +.+..+.   +|...|.+++|+| +  +.+|++++.||.|++||+++............   
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---  155 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLN---DSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE---  155 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE---
T ss_pred             EEEEecCCCcccccccCcceeeeec---ccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhcccccccc---
Confidence            999999877         3455555   6999999999999 7  88999999999999999987543222111100   


Q ss_pred             CCCCCceeeeceEEeecCCCceeeccee-----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEE
Q 022590          147 SKFPTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK  221 (294)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  221 (294)
                             ..........|...+.++.|+     ++.+++++.++.+.+|+...+.       ...+..+..|...|.+++
T Consensus       156 -------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~i~~~~  221 (351)
T 3f3f_A          156 -------MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK-------LHVAAKLPGHKSLIRSIS  221 (351)
T ss_dssp             -------EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC-------EEEEEECCCCCSCEEEEE
T ss_pred             -------ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc-------eeeeeecCCCCcceeEEE
Confidence                   000111223577788888885     6799999999999888876553       234667778889999999


Q ss_pred             EcccCCc--ceEEEEcCCCeEEEEeccCCCc--------------------------------------------eeeee
Q 022590          222 FSCDFHY--NAAAIGNREGKIFVWELQSSPP--------------------------------------------VLIAR  255 (294)
Q Consensus       222 ~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~--------------------------------------------~~~~~  255 (294)
                      |+|++..  .+|++++.||.|++||++....                                            .....
T Consensus       222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (351)
T 3f3f_A          222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSE  301 (351)
T ss_dssp             ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEE
T ss_pred             ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEE
Confidence            9999732  5899999999999999987421                                            12222


Q ss_pred             ccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          256 LSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       256 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                        ..+|...|++++|+|++++|++|+.||.|++||+.+
T Consensus       302 --~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  337 (351)
T 3f3f_A          302 --HDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY  337 (351)
T ss_dssp             --ECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             --EecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence              337889999999999999999999999999999875

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-41  Score=264.68  Aligned_cols=259  Identities=19%  Similarity=0.240  Sum_probs=218.7

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|.++|++++|+  |+++ +|++|+.||.|++||+.+++.+..+.+|...|++++|+| ++++|++++.||.|++||+
T Consensus        28 l~~h~~~v~~~~~s--~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           28 LTGHERPLTQVKYN--KEGD-LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EECCSSCEEEEEEC--TTSC-EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEET
T ss_pred             EEEeeceEEEEEEc--CCCC-EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Confidence            56899999999998  8998 999999999999999999999999999999999999999 8899999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC-----CcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      .+++.+..+.    +...|.+++|+| ++.++++++.+     +.|++||++..........            ....+.
T Consensus       104 ~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~------------~~~~~~  166 (369)
T 3zwl_B          104 SNGQCVATWK----SPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTK------------VSEEPI  166 (369)
T ss_dssp             TTCCEEEEEE----CSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE------------ECSSCS
T ss_pred             CCCcEEEEee----cCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecc------------ccccee
Confidence            9999998887    888999999999 88899999998     9999999987432211110            012234


Q ss_pred             EEeecCCC--ceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          159 FIASVHSN--YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       159 ~~~~~~~~--~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                      .....|..  .+.+++|+  ++++++++.||.|++||+++..        ..+..+..+...+.+++|+|++  .+|+++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~--~~l~~~  236 (369)
T 3zwl_B          167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY--------EYVDSIDLHEKSISDMQFSPDL--TYFITS  236 (369)
T ss_dssp             EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT--------EEEEEEECCSSCEEEEEECTTS--SEEEEE
T ss_pred             eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc--------EeEEEEecCCCceeEEEECCCC--CEEEEe
Confidence            45556666  89999997  7899999999999999998632        3677788888999999999998  689999


Q ss_pred             cCCCeEEEEeccCCCceeeeec---------------------------------------------------cccccCC
Q 022590          235 NREGKIFVWELQSSPPVLIARL---------------------------------------------------SHAQSKS  263 (294)
Q Consensus       235 ~~dg~i~i~d~~~~~~~~~~~~---------------------------------------------------~~~~~~~  263 (294)
                      +.||.|++||+++.+.......                                                   ....|..
T Consensus       237 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~  316 (369)
T 3zwl_B          237 SRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG  316 (369)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS
T ss_pred             cCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC
Confidence            9999999999987653322110                                                   0124778


Q ss_pred             CeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          264 PIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       264 ~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|++++|+|++++|++++.||.|++|+++.
T Consensus       317 ~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~  346 (369)
T 3zwl_B          317 PLNTVAISPQGTSYASGGEDGFIRLHHFEK  346 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence            999999999999999999999999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.3e-41  Score=279.47  Aligned_cols=236  Identities=27%  Similarity=0.431  Sum_probs=208.6

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|..+|.+++|+  |+|+ +|++|+.||.|++|+. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||.
T Consensus       340 ~~~~~~~v~~~~~s--~~g~-~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~  414 (577)
T 2ymu_A          340 LTGHSSSVWGVAFS--PDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR  414 (577)
T ss_dssp             ECCCSSCEEEEEEC--TTSS-EEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT
T ss_pred             EeCCCCCEEEEEEC--CCCC-EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC
Confidence            34788999999997  9998 9999999999999995 6778888999999999999999 8999999999999999996


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                       +++.+..+.   +|...|++++|+| ++.+|++++.|+.|++||...                        .....+..
T Consensus       415 -~~~~~~~~~---~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~------------------------~~~~~~~~  465 (577)
T 2ymu_A          415 -NGQLLQTLT---GHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNG------------------------QLLQTLTG  465 (577)
T ss_dssp             -TCCEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTS------------------------CEEEEEEC
T ss_pred             -CCCEEEEec---CCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCC------------------------CEEEEEcC
Confidence             677777777   6999999999999 889999999999999999753                        23556778


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      |...|.+++|+  +++|++++.|+.|++||.. ++         .+..+..|...|++++|+|++  .+|++++.||.|+
T Consensus       466 ~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~---------~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~dg~v~  533 (577)
T 2ymu_A          466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ---------LLQTLTGHSSSVRGVAFSPDG--QTIASASDDKTVK  533 (577)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SC---------EEEEEECCSSCEEEEEECTTS--SCEEEEETTSEEE
T ss_pred             CCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CC---------EEEEEeCCCCCEEEEEEcCCC--CEEEEEECcCEEE
Confidence            99999999997  7899999999999999953 22         677888999999999999999  5899999999999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      +||.. ++  ....+.  +|..+|++++|+|||++|+|++.||.|++||
T Consensus       534 lwd~~-~~--~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          534 LWNRN-GQ--LLQTLT--GHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EECTT-SC--EEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEeCC-CC--EEEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            99964 33  334444  7889999999999999999999999999997

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.2e-42  Score=275.85  Aligned_cols=251  Identities=16%  Similarity=0.152  Sum_probs=197.0

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .|+..|+||+|+  |.+..+||+|+.||.|+|||+.+++..  ..+.+|.+.|++|+|+|.++.+|++|+.||+|++||+
T Consensus       117 ~~~~~V~~l~~~--P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~  194 (435)
T 4e54_B          117 PFDRRATSLAWH--PTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF  194 (435)
T ss_dssp             ECSSCEEEEEEC--SSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred             CCCCCEEEEEEe--CCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence            678899999998  643338999999999999999877544  3456899999999999977889999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      +++.. ..+.....+...+.+++|+| ++.+|++|+.||.|++||++..                        .+..+..
T Consensus       195 ~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~------------------------~~~~~~~  248 (435)
T 4e54_B          195 KGNIL-RVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGK------------------------ELWNLRM  248 (435)
T ss_dssp             TSCEE-EEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSC------------------------BCCCSBC
T ss_pred             cCCce-eEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcc------------------------eeEEEec
Confidence            76543 34443334556789999999 8899999999999999998751                        2345678


Q ss_pred             CCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          164 HSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       164 ~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      |...|.+++|+   ..++++++.|+.|++||+++.+..      ..+.....|...|.+++|+|++  .+|++++.||.|
T Consensus       249 h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~------~~~~~~~~h~~~v~~~~~spdg--~~l~s~~~D~~i  320 (435)
T 4e54_B          249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK------ASFLYSLPHRHPVNAACFSPDG--ARLLTTDQKSEI  320 (435)
T ss_dssp             CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS------SCCSBCCBCSSCEEECCBCTTS--SEEEEEESSSCE
T ss_pred             ccceEEeeeecCCCceEEEEecCcceeeEEeccccccc------ceEEEeeeccccccceeECCCC--CeeEEEcCCCEE
Confidence            99999999997   347889999999999999876532      1233345678889999999998  689999999999


Q ss_pred             EEEeccCCCceee-----------------------------------------------eecc----------ccccCC
Q 022590          241 FVWELQSSPPVLI-----------------------------------------------ARLS----------HAQSKS  263 (294)
Q Consensus       241 ~i~d~~~~~~~~~-----------------------------------------------~~~~----------~~~~~~  263 (294)
                      ++||+.+.+....                                               ..+.          ..+|..
T Consensus       321 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~  400 (435)
T 4e54_B          321 RVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS  400 (435)
T ss_dssp             EEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC
T ss_pred             EEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC
Confidence            9999876431100                                               0000          113455


Q ss_pred             CeEEE-EEccCCCEEEEeccCCcEEEEecCC
Q 022590          264 PIRQT-AMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       264 ~v~~~-~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|.++ +|+|+|++|++|+ |+.|+||++++
T Consensus       401 ~v~s~~~fspdg~~lasg~-d~~i~iW~~~~  430 (435)
T 4e54_B          401 GISSLNEFNPMGDTLASAM-GYHILIWSQQE  430 (435)
T ss_dssp             CCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred             cEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence            67776 6999999999886 78999999875

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-40  Score=264.46  Aligned_cols=241  Identities=20%  Similarity=0.384  Sum_probs=208.1

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC-
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-   84 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-   84 (294)
                      .|.+.|.+++|+  |+++ +|++|+.||.|++||+.+++.+..+.+|...|.+++|++   ++|++|+.||.|++||++ 
T Consensus       132 ~~~~~v~~v~~s--~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~  205 (401)
T 4aez_A          132 DESTYVASVKWS--HDGS-FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRI  205 (401)
T ss_dssp             CTTCCEEEEEEC--TTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTS
T ss_pred             CCCCCEEEEEEC--CCCC-EEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEeccc
Confidence            478999999998  8998 999999999999999999999999999999999999954   699999999999999998 


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      .+..+..+.   +|...|.+++|+| ++.+|++|+.||.|++||+++                       ..+...+..|
T Consensus       206 ~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~-----------------------~~~~~~~~~~  258 (401)
T 4aez_A          206 ANHQIGTLQ---GHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARS-----------------------SIPKFTKTNH  258 (401)
T ss_dssp             SSCEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTC-----------------------SSEEEEECCC
T ss_pred             CcceeeEEc---CCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCC-----------------------CCccEEecCC
Confidence            455666666   6999999999999 889999999999999999997                       4456667789


Q ss_pred             CCceeeccee---cceEEEee--CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE--EcCC
Q 022590          165 SNYVDCNRWL---GDFILSKS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--GNRE  237 (294)
Q Consensus       165 ~~~i~~~~~~---~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~--~~~d  237 (294)
                      ...|.+++|+   ..++++++  .|+.|++||+++++         .+..+. +...+.+++|+|++.  ++++  |+.|
T Consensus       259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~---------~~~~~~-~~~~v~~~~~s~~~~--~l~~~~g~~d  326 (401)
T 4aez_A          259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA---------RVNTVD-AGSQVTSLIWSPHSK--EIMSTHGFPD  326 (401)
T ss_dssp             SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC---------EEEEEE-CSSCEEEEEECSSSS--EEEEEECTTT
T ss_pred             cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC---------EEEEEe-CCCcEEEEEECCCCC--eEEEEeecCC
Confidence            9999999997   35666655  79999999998765         444444 456799999999994  6766  6689


Q ss_pred             CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |.|++||+.+.+......+.  +|...|.+++|+|++++|++++.||.|++|++.+
T Consensus       327 g~i~v~~~~~~~~~~~~~~~--~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          327 NNLSIWSYSSSGLTKQVDIP--AHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             CEEEEEEEETTEEEEEEEEE--CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             CcEEEEecCCccceeEEEec--CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            99999999987644444444  7889999999999999999999999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-42  Score=272.49  Aligned_cols=255  Identities=11%  Similarity=0.113  Sum_probs=200.6

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc--cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .+.++|++++|+  |+|+ +|++|+.||.|++||+.++  +....+.+|...|++++|+| ++++|++++.|++|++||+
T Consensus         9 ~~~~~v~~~~~s--~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            9 ILPKPSYEHAFN--SQRT-EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-KSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             ECSSCCSCCEEC--SSSS-EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-TTCCEEEEETTSSEEEC--
T ss_pred             cCCCcEEEEEEC--CCCC-EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-CCCEEEEEeCCCeEEEEEc
Confidence            467899999998  8998 9999999999999999988  78889999999999999999 8899999999999999999


Q ss_pred             CCCc---eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           84 QTGI---CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        84 ~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      .+++   ....+.   +|...|.+++|+| ++.+|++++.|+.|++||++....                    ......
T Consensus        85 ~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--------------------~~~~~~  140 (377)
T 3dwl_C           85 RPDGTWKQTLVLL---RLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQEND--------------------WWVSKH  140 (377)
T ss_dssp             ----CCCCEEECC---CCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-------------------------CCCCEE
T ss_pred             CCCCceeeeeEec---ccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCccc--------------------ceeeeE
Confidence            9877   444444   6999999999999 888999999999999999987321                    012334


Q ss_pred             eec-CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC---------CCceeeeeeecCCCCeeEEEEcccCCc
Q 022590          161 ASV-HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE---------GTADILQKYPVPECDIWFIKFSCDFHY  228 (294)
Q Consensus       161 ~~~-~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (294)
                      +.. |...|.+++|+  +++|++++.|+.|++||++........         .....+..+ .|...+.+++|+|++  
T Consensus       141 ~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~--  217 (377)
T 3dwl_C          141 LKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG--  217 (377)
T ss_dssp             ECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS--
T ss_pred             eecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC--
Confidence            455 89999999997  779999999999999999754321110         112344555 788899999999998  


Q ss_pred             ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .+|++++.||.|++||+++.+...........|..+|.+++|+|++++|++|+.|+.+ +|+..
T Consensus       218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            5899999999999999999875222122233788899999999999999999877655 67654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=3.7e-41  Score=284.44  Aligned_cols=246  Identities=20%  Similarity=0.346  Sum_probs=206.9

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-----ccceecccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i   78 (294)
                      ++.|.+.|++++|+  |++..+|++|+.||+|++|++.+..     ....+.+|...|++++|+| ++++|++|+.||+|
T Consensus       378 l~~H~~~V~~v~~~--~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          378 MRAHTDMVTAIATP--IDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGEL  454 (694)
T ss_dssp             EECCSSCEEEEECC--TTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             cccCCceeEEEEec--CCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC-CCCEEEEEeCCCcE
Confidence            56899999999997  6553499999999999999997643     3457889999999999999 89999999999999


Q ss_pred             EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      ++||+.+++....+.   +|...|.+++|+| ++.+|++|+.|++|++||+.....                    ....
T Consensus       455 ~vwd~~~~~~~~~~~---~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~--------------------~~~~  510 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFV---GHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECK--------------------YTIS  510 (694)
T ss_dssp             EEEETTTTEEEEEEE---CCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE--------------------EEEC
T ss_pred             EEEECCCCcceeEEe---CCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcc--------------------eeec
Confidence            999999999988888   7999999999999 888999999999999999865210                    0001


Q ss_pred             EEeecCCCceeecceec----ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          159 FIASVHSNYVDCNRWLG----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                      .....|...|.++.|+.    ..+++++.|+.|++||+++.+         ....+..|...|.+++|+|++  .+|++|
T Consensus       511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~---------~~~~~~~h~~~v~~v~~spdg--~~l~sg  579 (694)
T 3dm0_A          511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK---------LRSTLAGHTGYVSTVAVSPDG--SLCASG  579 (694)
T ss_dssp             SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEECTTS--SEEEEE
T ss_pred             cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc---------EEEEEcCCCCCEEEEEEeCCC--CEEEEE
Confidence            11246888999999972    479999999999999998654         567788899999999999998  699999


Q ss_pred             cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          235 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       235 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +.||.|++||+++++.  ...+.   +...|.+++|+|++.+|++++ |+.|++||+++
T Consensus       580 ~~Dg~i~iwd~~~~~~--~~~~~---~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~  632 (694)
T 3dm0_A          580 GKDGVVLLWDLAEGKK--LYSLE---ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLES  632 (694)
T ss_dssp             ETTSBCEEEETTTTEE--EECCB---CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTT
T ss_pred             eCCCeEEEEECCCCce--EEEec---CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCC
Confidence            9999999999998863  33332   346799999999998887775 55699999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.8e-40  Score=261.77  Aligned_cols=253  Identities=15%  Similarity=0.189  Sum_probs=205.6

Q ss_pred             ccccCceeEEEEEeecCCC-ceEEEEeecCCeEEEEEcCCccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            4 VDQKEESFYTVSWACNVDG-IPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      +..|.+.|++++|+  |++ + +|++|+.||.|++||+.+++....+.  +|...|.+++|+|.++.+|++++.|+.|++
T Consensus        69 ~~~h~~~v~~~~~~--~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           69 ASPFDRRVTSLEWH--PTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             ECCCSSCEEEEEEC--SSCTT-EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             ccCCCCCEEEEEEC--CCCCC-EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            45799999999998  888 6 99999999999999999888776665  699999999999966789999999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ||+.. ..+..+....+|...|.+++|+| ++.+|++++.|+.|++||++.                        .+...
T Consensus       146 wd~~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~------------------------~~~~~  199 (383)
T 3ei3_B          146 RDFSG-SVIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLDG------------------------HEIFK  199 (383)
T ss_dssp             EETTS-CEEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETTS------------------------CEEEE
T ss_pred             EECCC-CceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECCC------------------------CEEEE
Confidence            99985 55666664445668899999999 889999999999999999953                        34566


Q ss_pred             eecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc-cCCcceEEEEcC
Q 022590          161 ASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC-DFHYNAAAIGNR  236 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~  236 (294)
                      +..|...|.+++|+  ++ ++++++.|+.|++||+++.+.     ....+..+ .+...+.+++|+| ++  .+|++++.
T Consensus       200 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~-~~~~~v~~~~~s~~~~--~~l~~~~~  271 (383)
T 3ei3_B          200 EKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD-----KNSYIAEM-PHEKPVNAAYFNPTDS--TKLLTTDQ  271 (383)
T ss_dssp             EECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS-----TTCEEEEE-ECSSCEEEEEECTTTS--CEEEEEES
T ss_pred             eccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc-----ccceEEEe-cCCCceEEEEEcCCCC--CEEEEEcC
Confidence            77899999999998  45 899999999999999997542     12234444 5788999999999 88  58999999


Q ss_pred             CCeEEEEeccCCCceee-------------------------------------------------------eecccccc
Q 022590          237 EGKIFVWELQSSPPVLI-------------------------------------------------------ARLSHAQS  261 (294)
Q Consensus       237 dg~i~i~d~~~~~~~~~-------------------------------------------------------~~~~~~~~  261 (294)
                      |+.|++||+++.+....                                                       ..+....+
T Consensus       272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~  351 (383)
T 3ei3_B          272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNA  351 (383)
T ss_dssp             SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred             CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCC
Confidence            99999999865432111                                                       11111124


Q ss_pred             CCCeEEEEEccCCCEEEEeccCCcEEEEecCCC
Q 022590          262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAIPT  294 (294)
Q Consensus       262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~~  294 (294)
                      ...+..++|+|++++|++|+ ||.|++||++++
T Consensus       352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~~  383 (383)
T 3ei3_B          352 AGIISLNKFSPTGDVLASGM-GFNILIWNREDT  383 (383)
T ss_dssp             CSCCCEEEECTTSSEEEEEE-TTEEEEEECC--
T ss_pred             CceEEEEEEecCccEEEEec-CCcEEEEecCCC
Confidence            56677889999999999997 999999999864

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.3e-41  Score=284.07  Aligned_cols=249  Identities=26%  Similarity=0.353  Sum_probs=204.0

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|...|.+++|+  |+|+ +|++|+.||.|+|||+.+++....+.+|...|.+++|+| ++++|++|+.|++|++||.
T Consensus       426 ~~~h~~~v~~v~~s--~~g~-~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          426 LTGHSHFVEDVVLS--SDGQ-FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EECCSSCEEEEEEC--TTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECT
T ss_pred             ecCCCCcEEEEEEC--CCCC-EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEEC
Confidence            45799999999998  8998 999999999999999999999999999999999999999 8899999999999999998


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCC-CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSD-IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      .............+|...|.+++|+|+. ...|++++.|+.|++||++.                       ......+.
T Consensus       502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~-----------------------~~~~~~~~  558 (694)
T 3dm0_A          502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN-----------------------CKLRSTLA  558 (694)
T ss_dssp             TSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-----------------------CCEEEEEC
T ss_pred             CCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-----------------------CcEEEEEc
Confidence            6554444333344799999999999933 25799999999999999987                       34456778


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      +|...|.+++|+  +++|++++.||.|++||+++++         .+..+.. ...+.+++|+|++  .+++++ .++.|
T Consensus       559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~---------~~~~~~~-~~~v~~~~~sp~~--~~l~~~-~~~~i  625 (694)
T 3dm0_A          559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK---------KLYSLEA-NSVIHALCFSPNR--YWLCAA-TEHGI  625 (694)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTE---------EEECCBC-SSCEEEEEECSSS--SEEEEE-ETTEE
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---------eEEEecC-CCcEEEEEEcCCC--cEEEEE-cCCCE
Confidence            899999999997  7899999999999999998765         3333333 4579999999998  455555 56779


Q ss_pred             EEEeccCCCceeeeeccc---------------cccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          241 FVWELQSSPPVLIARLSH---------------AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~---------------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++||+++.+.........               ..+...+++++|+|+|++|++|+.||.|++|++.
T Consensus       626 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          626 KIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            999999876433222110               0111247899999999999999999999999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-41  Score=289.27  Aligned_cols=256  Identities=17%  Similarity=0.211  Sum_probs=214.5

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC--CccccceecccCcceEEEEeCCCC--CceEEEeeCCCc
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDES   77 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~   77 (294)
                      ..++.|.++|++++|+  |+|+ +|++|+.||.|++||+.  +++....+.+|.++|++++|+| +  +++|++|+.||+
T Consensus         3 ~~l~gH~~~V~~l~~s--~dg~-~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~   78 (753)
T 3jro_A            3 VIANAHNELIHDAVLD--YYGK-RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGK   78 (753)
T ss_dssp             -----CCCCEEEECCC--SSSC-CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSC
T ss_pred             eecccCcceeEEEEEC--CCCC-eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCe
Confidence            3567999999999998  8898 99999999999999998  5577788999999999999998 5  889999999999


Q ss_pred             EEEEEcCCCc--eEEEeeccCCCCCceeEEEEecCC--CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           78 VRLWNVQTGI--CILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        78 i~vwd~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      |++||+.+++  .+..+.   +|...|.+++|+| +  +.++++|+.||.|++||++...                    
T Consensus        79 I~vwd~~~~~~~~~~~~~---~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~--------------------  134 (753)
T 3jro_A           79 VLIWKEENGRWSQIAVHA---VHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENG--------------------  134 (753)
T ss_dssp             EEEEEEETTEEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSS--------------------
T ss_pred             EEEEECCCCccccccccc---CCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCC--------------------
Confidence            9999999886  455555   6999999999999 6  8899999999999999998732                    


Q ss_pred             eeeceEEeecCCCceeeccee---------------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCee
Q 022590          154 VQFPVFIASVHSNYVDCNRWL---------------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW  218 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~~~---------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~  218 (294)
                       .........|...|.++.|+               ++++++++.||.|++||++++..     .......+..|...|.
T Consensus       135 -~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~~~~~h~~~V~  208 (753)
T 3jro_A          135 -TTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-----TYVLESTLEGHSDWVR  208 (753)
T ss_dssp             -CCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT-----EEEEEEEECCCSSCEE
T ss_pred             -CcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc-----cceeeeeecCCCCcEE
Confidence             12234567788999999985               46899999999999999987642     2345667788899999


Q ss_pred             EEEEccc---CCcceEEEEcCCCeEEEEeccCCCceeeee-ccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          219 FIKFSCD---FHYNAAAIGNREGKIFVWELQSSPPVLIAR-LSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       219 ~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +++|+|+   +  .++++++.||.|++||+++.+...... .....|...|++++|+|+|++|++|+.||.|++|++++
T Consensus       209 ~l~~sp~~~~~--~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          209 DVAWSPTVLLR--SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EEEECCCCSSS--EEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EEEeccCCCCC--CEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            9999999   6  699999999999999999874322222 22346778999999999999999999999999999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.3e-40  Score=262.19  Aligned_cols=258  Identities=15%  Similarity=0.224  Sum_probs=211.5

Q ss_pred             ccccCceeEEEEEeecC-CCceEEEEeecCCeEEEEEcCCccccceec-------------ccCcceEEEEeCCCCCceE
Q 022590            4 VDQKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFV-------------GHGDSINEIRTQPLKPSLV   69 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~h~~~v~~~~~~~~~~~~l   69 (294)
                      +..|.++|++++|+  | +++ +|++|+.||.|++||+.+++....+.             +|...|.+++|+|.++.+|
T Consensus        39 ~~~h~~~v~~~~~s--~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           39 ERIHGGGINTLDIE--PVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             CCCCSSCEEEEEEC--TTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeccCCcEEEEEEe--cCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            45799999999998  8 888 99999999999999999887666553             5999999999999777899


Q ss_pred             EEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCC--CceEEeeecCCcEEEEeccccccccccceeecCCCC
Q 022590           70 VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS  147 (294)
Q Consensus        70 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  147 (294)
                      ++++.||.|++||+.+++....+.    +...+.++.|+|..  +.++++++.||.|++||++.                
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~----------------  175 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS----------------  175 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS----------------
T ss_pred             EEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC----------------
Confidence            999999999999999999888887    78889999999842  34899999999999999987                


Q ss_pred             CCCCceeeeceEEeecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCC-------CCceeeeeeecCCCCe
Q 022590          148 KFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGE-------GTADILQKYPVPECDI  217 (294)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~~~~~i  217 (294)
                             ......+..|...|.+++|+  ++ ++++++.||.|++||++........       ...........+...+
T Consensus       176 -------~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  248 (408)
T 4a11_B          176 -------GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV  248 (408)
T ss_dssp             -------SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred             -------cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCce
Confidence                   34456677899999999997  44 5899999999999999876521100       0111112224677889


Q ss_pred             eEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee-------------------------------------------
Q 022590          218 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA-------------------------------------------  254 (294)
Q Consensus       218 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------------------------------------------  254 (294)
                      .+++|+|++  .+|++++.||.|++||+.+++.....                                           
T Consensus       249 ~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~  326 (408)
T 4a11_B          249 NGLCFTSDG--LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQ  326 (408)
T ss_dssp             EEEEECTTS--SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCE
T ss_pred             eEEEEcCCC--CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcc
Confidence            999999998  68999999999999999876432110                                           


Q ss_pred             eccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          255 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       255 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .....+|...|++++|+|++++|++++.||.|++||+++
T Consensus       327 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~  365 (408)
T 4a11_B          327 ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL  365 (408)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC
T ss_pred             eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC
Confidence            011236788999999999999999999999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-40  Score=261.86  Aligned_cols=258  Identities=12%  Similarity=0.106  Sum_probs=214.0

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      +..|+++|++++|+  |+++ +|++++.||.|++||+.+++  .+..+.+|...|++++|+| ++++|++++.||.|++|
T Consensus         4 ~~~~~~~i~~~~~s--~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            4 HSFLVEPISCHAWN--KDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EESCSSCCCEEEEC--TTSS-EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEE
T ss_pred             ecccCCCeEEEEEC--CCCC-EEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEE
Confidence            44689999999998  8998 99999999999999999887  8888999999999999999 88999999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      |+.+++....+.. ..|...|.+++|+| ++.+|++++.|+.|++||++.....                   .......
T Consensus        80 d~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~-------------------~~~~~~~  138 (372)
T 1k8k_C           80 TLKGRTWKPTLVI-LRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW-------------------WVCKHIK  138 (372)
T ss_dssp             EEETTEEEEEEEC-CCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-------------------EEEEEEC
T ss_pred             ECCCCeeeeeEEe-ecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcc-------------------eeeeeee
Confidence            9988875554431 25889999999999 8899999999999999999873210                   1112233


Q ss_pred             ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCC---------CCCceeeeeeecCCCCeeEEEEcccCCcce
Q 022590          162 SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG---------EGTADILQKYPVPECDIWFIKFSCDFHYNA  230 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  230 (294)
                      ..|...|.+++|+  +++|++++.|+.|++||++.......         ......+..+..+...+.+++|+|++  .+
T Consensus       139 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~  216 (372)
T 1k8k_C          139 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG--SR  216 (372)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS--SE
T ss_pred             cccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC--CE
Confidence            5688999999997  77999999999999999864321110         11234667777888899999999998  58


Q ss_pred             EEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       231 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |++++.||.|++||+++.+..  ..+.  .|..+|.+++|+|++++|++| .||.|++|++.+
T Consensus       217 l~~~~~d~~i~i~d~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          217 VAWVSHDSTVCLADADKKMAV--ATLA--SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             EEEEETTTEEEEEEGGGTTEE--EEEE--CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             EEEEeCCCEEEEEECCCCcee--EEEc--cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            999999999999999988743  3333  667899999999999988888 899999999864

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-41  Score=269.00  Aligned_cols=248  Identities=15%  Similarity=0.255  Sum_probs=208.5

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC----ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      .|...|++++|+  |+++ +|++|+.||.|++|++.+    .+....+.+|...|++++|+|+++.+|++++.||.|++|
T Consensus        65 ~~~~~v~~~~~s--~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iw  141 (416)
T 2pm9_A           65 QVDSKFNDLDWS--HNNK-IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIW  141 (416)
T ss_dssp             CCSSCEEEEEEC--SSSS-CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBC
T ss_pred             ecCCceEEEEEC--CCCC-eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEE
Confidence            588999999997  8998 999999999999999987    457788899999999999999448999999999999999


Q ss_pred             EcCCCc------eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           82 NVQTGI------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        82 d~~~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      |+.+++      ....+....+|...|.+++|+|+++.+|++++.||.|++||++..                       
T Consensus       142 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----------------------  198 (416)
T 2pm9_A          142 DMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-----------------------  198 (416)
T ss_dssp             BTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-----------------------
T ss_pred             ECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-----------------------
Confidence            999886      443332333699999999999944889999999999999999983                       


Q ss_pred             eceEEeecC------CCceeeccee--c-ceEEEeeCCC---eEEEecCCCCCCCCCCCCceeeeeee-cCCCCeeEEEE
Q 022590          156 FPVFIASVH------SNYVDCNRWL--G-DFILSKSVDN---EIVLWEPKMKEQSPGEGTADILQKYP-VPECDIWFIKF  222 (294)
Q Consensus       156 ~~~~~~~~~------~~~i~~~~~~--~-~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~  222 (294)
                      .....+..+      ...|.+++|+  + .++++++.|+   .|++||+++...        ....+. .|...+.+++|
T Consensus       199 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~--------~~~~~~~~~~~~v~~~~~  270 (416)
T 2pm9_A          199 KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT--------PLQTLNQGHQKGILSLDW  270 (416)
T ss_dssp             EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS--------CSBCCCSCCSSCEEEEEE
T ss_pred             CcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC--------CcEEeecCccCceeEEEe
Confidence            223333433      7889999997  3 5899999998   999999997632        344455 67889999999


Q ss_pred             cc-cCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC-CEEEEeccCCcEEEEecCC
Q 022590          223 SC-DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       223 ~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~vw~~~~  293 (294)
                      +| ++  .+|++++.||.|++||+++.+.  ...+.  .|...|.+++|+|++ .+|++++.||.|++||+..
T Consensus       271 s~~~~--~~l~s~~~dg~v~~wd~~~~~~--~~~~~--~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~  337 (416)
T 2pm9_A          271 CHQDE--HLLLSSGRDNTVLLWNPESAEQ--LSQFP--ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN  337 (416)
T ss_dssp             CSSCS--SCEEEEESSSEEEEECSSSCCE--EEEEE--CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred             CCCCC--CeEEEEeCCCCEEEeeCCCCcc--ceeec--CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence            99 66  6899999999999999998864  33333  677899999999999 8999999999999999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.6e-40  Score=265.56  Aligned_cols=252  Identities=18%  Similarity=0.291  Sum_probs=209.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC----------ccccceecccCcceEEEEeCCCCCc-eEEEeeC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----------EKLHKSFVGHGDSINEIRTQPLKPS-LVVSASK   74 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~   74 (294)
                      .|.+.|++++|+  |++..+|++++.||.|++|++.+          .+....+.+|...|++++|+| ++. +|++|+.
T Consensus       126 ~h~~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~  202 (430)
T 2xyi_A          126 NHEGEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP-NLNGYLLSASD  202 (430)
T ss_dssp             EESSCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT-TSTTEEEEECT
T ss_pred             cCCCcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC-CCCCeEEEEeC
Confidence            789999999998  76433999999999999999986          577788899999999999999 555 9999999


Q ss_pred             CCcEEEEEcCCCce-------EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCC
Q 022590           75 DESVRLWNVQTGIC-------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS  147 (294)
Q Consensus        75 dg~i~vwd~~~~~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~  147 (294)
                      ||+|++|++..+..       ...+.   +|...|.+++|+|.++.+|++++.||.|++||++....             
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~-------------  266 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFT---GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT-------------  266 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEEC---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS-------------
T ss_pred             CCeEEEEeCCCCCCCCceeccceeec---CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC-------------
Confidence            99999999987422       23333   69999999999997788999999999999999997310             


Q ss_pred             CCCCceeeeceEEeecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590          148 KFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  224 (294)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (294)
                             ..+...+..|...|.+++|+  +. ++++++.||.|++||++....        .+..+..|...+.+++|+|
T Consensus       267 -------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--------~~~~~~~h~~~v~~i~~sp  331 (430)
T 2xyi_A          267 -------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--------KLHSFESHKDEIFQVQWSP  331 (430)
T ss_dssp             -------SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------CSEEEECCSSCEEEEEECS
T ss_pred             -------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--------CeEEeecCCCCEEEEEECC
Confidence                   13455567899999999997  44 689999999999999987432        4667778889999999999


Q ss_pred             cCCcceEEEEcCCCeEEEEeccCCCcee----------eeeccccccCCCeEEEEEccCCC-EEEEeccCCcEEEEecC
Q 022590          225 DFHYNAAAIGNREGKIFVWELQSSPPVL----------IARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAI  292 (294)
Q Consensus       225 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~  292 (294)
                      ++. .++++++.||.|++||+.......          .....+.+|...|++++|+|+++ +|++++.||.|++|++.
T Consensus       332 ~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          332 HNE-TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             SCT-TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             CCC-CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence            985 479999999999999998732110          12222347888999999999999 89999999999999986

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-39  Score=252.90  Aligned_cols=239  Identities=16%  Similarity=0.263  Sum_probs=205.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee---c--ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF---V--GHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      .|.+.|.+++|+  |+++ +|++++ ||.|++||+.+++....+   .  .|...|.+++|+| ++++|++++.||.|++
T Consensus        49 ~h~~~v~~~~~~--~~~~-~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~  123 (337)
T 1gxr_A           49 NHGEVVCAVTIS--NPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEEC--SSSS-EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEE
T ss_pred             cCCCceEEEEEe--cCCc-EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEE
Confidence            789999999998  8998 899988 999999999877644333   2  7899999999999 8899999999999999


Q ss_pred             EEcCCCc--eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           81 WNVQTGI--CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        81 wd~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      ||+.+++  ....+.   .|...|.+++|+| ++.++++++.||.|++||+++                       ....
T Consensus       124 ~d~~~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~-----------------------~~~~  176 (337)
T 1gxr_A          124 WDLAAPTPRIKAELT---SSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHN-----------------------QTLV  176 (337)
T ss_dssp             EECCCC--EEEEEEE---CSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----------------------TEEE
T ss_pred             EECCCCCcceeeecc---cCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCC-----------------------Ccee
Confidence            9999887  444555   6899999999999 889999999999999999987                       3445


Q ss_pred             EEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          159 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      ..+..|...+.++.|+  ++++++++.|+.|++||+++++         .+.... +...+.+++|+|++  .++++++.
T Consensus       177 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---------~~~~~~-~~~~v~~~~~s~~~--~~l~~~~~  244 (337)
T 1gxr_A          177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR---------QLQQHD-FTSQIFSLGYCPTG--EWLAVGME  244 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------EEEEEE-CSSCEEEEEECTTS--SEEEEEET
T ss_pred             eeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCc---------eEeeec-CCCceEEEEECCCC--CEEEEEcC
Confidence            6677899999999996  7799999999999999998764         333333 56779999999998  68999999


Q ss_pred             CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +|.|++||+++.+.   ..+.  .|..+|.+++|+|++++|++++.||.|++||+++
T Consensus       245 ~~~i~~~~~~~~~~---~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~  296 (337)
T 1gxr_A          245 SSNVEVLHVNKPDK---YQLH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             TSCEEEEETTSSCE---EEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCcEEEEECCCCCe---EEEc--CCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence            99999999998753   2222  6778999999999999999999999999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.2e-40  Score=273.56  Aligned_cols=263  Identities=24%  Similarity=0.344  Sum_probs=213.1

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .|+.|+++|++++|+  |||+ +||+|+.|+.|+|||. ++++++++.+|..+|++++|+| ++++|++++.|++|++||
T Consensus        11 ~L~GH~~~V~~~a~s--pdg~-~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fsp-dg~~las~~~d~~i~vWd   85 (577)
T 2ymu_A           11 RLEAHSSSVRGVAFS--PDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN   85 (577)
T ss_dssp             EECCCSSCEEEEEEC--TTSS-CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred             EECCCCCcEEEEEEC--CCCC-EEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEE
Confidence            367899999999998  9999 9999999999999995 7888899999999999999999 899999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc-------eeecCCCCCCC-----
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS-------FTWTDLPSKFP-----  150 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------~~~~~~~~~~~-----  150 (294)
                      . +++.+..+.   +|...|.+++|+| ++.+|++++.|+.+++|+...........       ..+........     
T Consensus        86 ~-~~~~~~~~~---~~~~~v~~~~~s~-d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  160 (577)
T 2ymu_A           86 R-NGQLLQTLT---GHSSSVRGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD  160 (577)
T ss_dssp             T-TSCEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             C-CCCEEEEEE---CCCCCEEEEEECC-CCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccc
Confidence            6 677777777   7999999999999 88999999999999999976532211110       00000000000     


Q ss_pred             -----CceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc
Q 022590          151 -----TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS  223 (294)
Q Consensus       151 -----~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  223 (294)
                           .............|...|.++.++  ++++++++.|+.|++||...          ..+..+..+...+.+++|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~----------~~~~~~~~~~~~v~~~~~s  230 (577)
T 2ymu_A          161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----------QLLQTLTGHSSSVRGVAFS  230 (577)
T ss_dssp             SEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS----------CEEEEEECCSSCEEEEEEC
T ss_pred             cceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC----------cEEEEEecCCCCEEEEEEC
Confidence                 000012234556788889999886  78999999999999999642          2567788889999999999


Q ss_pred             ccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          224 CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       224 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |++  .+|++++.|+.|++||....   ....+.  .|...|++++|+|++++|++++.|+.|++||..
T Consensus       231 ~dg--~~l~~~~~d~~i~~w~~~~~---~~~~~~--~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~  292 (577)
T 2ymu_A          231 PDG--QTIASASDDKTVKLWNRNGQ---LLQTLT--GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN  292 (577)
T ss_dssp             TTS--SCEEEEETTSCEEEECTTSC---EEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCC--CEEEEEeCCCEEEEEeCCCC---EEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC
Confidence            998  58999999999999996543   333343  778899999999999999999999999999975

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.9e-40  Score=263.69  Aligned_cols=261  Identities=17%  Similarity=0.225  Sum_probs=200.9

Q ss_pred             eeEEE-EEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590           10 SFYTV-SWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus        10 ~v~~~-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      .+.++ .|+  |+++ +|++|+.||.|++||+.+++....+.+|...|++++|+| ++++|++|+.|++|++||+.+++.
T Consensus        98 ~~~~~~~~~--~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~  173 (420)
T 3vl1_A           98 DYTAVDTAK--LQMR-RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSN  173 (420)
T ss_dssp             CEEEEEEEC--SSSC-EEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCC
T ss_pred             CceEEEEEe--cCCC-EEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcC
Confidence            34444 444  8898 999999999999999999998888889999999999999 889999999999999999999999


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee----eceEEeecC
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ----FPVFIASVH  164 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  164 (294)
                      +..+.   +|...|.+++|+| ++.+|++++.||.|++||+++..........  ..... ......    ........+
T Consensus       174 ~~~~~---~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~~~-~v~~~~~~~~~~~~~~~~~  246 (420)
T 3vl1_A          174 PRTLI---GHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRK--ENPHD-GVNSIALFVGTDRQLHEIS  246 (420)
T ss_dssp             CEEEE---CCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBT--TBTTC-CEEEEEEEECCCSSCGGGC
T ss_pred             ceEEc---CCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecC--CCCCC-CccEEEEecCCcceeeecc
Confidence            88887   7999999999999 8899999999999999999874322211100  00000 000000    000011234


Q ss_pred             CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      ...+.+++|+  +++|++++.||.|++||+++++.        .......+...+.+++|+|++. .+|++|+.||.|++
T Consensus       247 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-~~l~~g~~dg~i~v  317 (420)
T 3vl1_A          247 TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ--------TIQLPSKFTCSCNSLTVDGNNA-NYIYAGYENGMLAQ  317 (420)
T ss_dssp             CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE--------EEEECCTTSSCEEEEEECSSCT-TEEEEEETTSEEEE
T ss_pred             cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce--------eEEcccccCCCceeEEEeCCCC-CEEEEEeCCCeEEE
Confidence            5778888886  78999999999999999987652        2233344678899999999984 38999999999999


Q ss_pred             EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ||+++.+... ..+. ..|..+|.++.+ +++++|++++.||.|++|++..
T Consensus       318 wd~~~~~~~~-~~~~-~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          318 WDLRSPECPV-GEFL-INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             EETTCTTSCS-EEEE-ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred             EEcCCCcCch-hhhh-ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence            9999875322 2222 135677888855 5788999999999999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.6e-39  Score=251.97  Aligned_cols=238  Identities=14%  Similarity=0.268  Sum_probs=207.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .|...|.+++|+  |+++ +|++++.||.|++||+.+++  ....+..|...|.+++|+| ++++|++++.||.|++||+
T Consensus        95 ~~~~~v~~~~~~--~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A           95 NRDNYIRSCKLL--PDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             CTTSBEEEEEEC--TTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEET
T ss_pred             CCCCcEEEEEEc--CCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeC
Confidence            688999999998  8998 99999999999999998877  5667788999999999999 8899999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      ++++.+..+.   +|...|.+++|+| ++.+|++++.||.|++||++...                       .... ..
T Consensus       171 ~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~-----------------------~~~~-~~  222 (337)
T 1gxr_A          171 HNQTLVRQFQ---GHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGR-----------------------QLQQ-HD  222 (337)
T ss_dssp             TTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE-----------------------EEEE-EE
T ss_pred             CCCceeeeee---cccCceEEEEECC-CCCEEEEEecCCcEEEEECCCCc-----------------------eEee-ec
Confidence            9999888887   6999999999999 88999999999999999998732                       2222 24


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      +...+.+++|+  ++++++++.++.|++||++..+          ......+...+..++|+|++  .++++++.||.|+
T Consensus       223 ~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~  290 (337)
T 1gxr_A          223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----------KYQLHLHESCVLSLKFAYCG--KWFVSTGKDNLLN  290 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----------EEEECCCSSCEEEEEECTTS--SEEEEEETTSEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC----------eEEEcCCccceeEEEECCCC--CEEEEecCCCcEE
Confidence            67788999996  7899999999999999998764          33566778899999999998  5899999999999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +||+.+++..  ...   .|...|.+++|+|++++|++++.||.|++|++.
T Consensus       291 ~~~~~~~~~~--~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          291 AWRTPYGASI--FQS---KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEETTTCCEE--EEE---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             EEECCCCeEE--EEe---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            9999998744  222   456789999999999999999999999999974

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5e-40  Score=265.55  Aligned_cols=263  Identities=21%  Similarity=0.352  Sum_probs=212.8

Q ss_pred             ccccCcee-EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            4 VDQKEESF-YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         4 ~~~h~~~v-~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      +..|.+.| .++++    +++ +|++|+.||.|++||+.+++.+..+.+|.+.|++++|+| ++ +|++|+.||+|++||
T Consensus       117 l~~h~~~v~~~~~~----~~~-~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~-~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          117 LRGHMTSVITCLQF----EDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EECCSSSCEEEEEE----ETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-TT-EEEEEETTSCEEEEE
T ss_pred             EcCCCCCcEEEEEE----CCC-EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcC-CC-EEEEEeCCCCEEEEE
Confidence            45787775 55555    355 899999999999999999999999999999999999998 55 999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEec-CCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHP-SDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      +.+++.+..+.   +|...|.+++|++ .++.++++|+.||.|++||++...............................
T Consensus       190 ~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          190 IKKGCCTHVFE---GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             TTTTEEEEEEC---CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred             CCCCcEEEEEC---CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence            99999988887   6999999999995 2668999999999999999987433221111000000000001111225567


Q ss_pred             ecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          162 SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       162 ~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      .+|...+.++..+++++++++.|+.|++||+++++         .+..+..|...+.+++|+|++  .++++|+.||.|+
T Consensus       267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~~~~--~~l~sg~~dg~i~  335 (464)
T 3v7d_B          267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK---------CLYILSGHTDRIYSTIYDHER--KRCISASMDTTIR  335 (464)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEE
T ss_pred             cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------EEEEecCCCCCEEEEEEcCCC--CEEEEEeCCCcEE
Confidence            88999999999999999999999999999998654         677788889999999999998  5899999999999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +||+++++  ....+.  .|...|.+++|+  +++|++++.||.|++||+++
T Consensus       336 vwd~~~~~--~~~~~~--~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~  381 (464)
T 3v7d_B          336 IWDLENGE--LMYTLQ--GHTALVGLLRLS--DKFLVSAAADGSIRGWDAND  381 (464)
T ss_dssp             EEETTTTE--EEEEEC--CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             EEECCCCc--EEEEEe--CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC
Confidence            99999876  334444  788899999997  57999999999999999875

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.2e-39  Score=259.98  Aligned_cols=247  Identities=20%  Similarity=0.366  Sum_probs=205.1

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|.+.|++++|+  |+|+ +||+|+.||.|+|||+.+++.+..+.+|...+.++++++   .+|++|+.|+.+++||.
T Consensus       143 ~~~~~~~V~sv~fs--pdg~-~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~  216 (420)
T 4gga_A          143 MEQPGEYISSVAWI--KEGN-YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDV  216 (420)
T ss_dssp             CCSTTCCEEEEEEC--TTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEET
T ss_pred             ecCCCCcEEEEEEC--CCCC-EEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeee
Confidence            35788899999998  9999 999999999999999999999999999999999998864   79999999999999999


Q ss_pred             CCCc-eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           84 QTGI-CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        84 ~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      .... .+..+.   +|...+..+.|+| ++.++++++.|+.+++|+.......                   ........
T Consensus       217 ~~~~~~~~~~~---~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~-------------------~~~~~~~~  273 (420)
T 4gga_A          217 RVAEHHVATLS---GHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG-------------------WVPLQTFT  273 (420)
T ss_dssp             TSSSCEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCCSSC-------------------SCCSEEEC
T ss_pred             cccceeeEEec---ccccceeeeeecC-CCCeeeeeeccccceEEeecccccc-------------------ceeeeeec
Confidence            8654 445555   7999999999999 8899999999999999999873211                   22345667


Q ss_pred             cCCCceeeccee---cceEEE--eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          163 VHSNYVDCNRWL---GDFILS--KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       163 ~~~~~i~~~~~~---~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      .|...|.+++|+   +..+++  |+.|+.|++||+++++         ....+.. ...+.++.|+|++...+.++|+.|
T Consensus       274 ~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~---------~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d  343 (420)
T 4gga_A          274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA---------CLSAVDA-HSQVCSILWSPHYKELISGHGFAQ  343 (420)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE---------EEEEEEC-SSCEEEEEEETTTTEEEEEECTTT
T ss_pred             ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc---------cceeecc-ccceeeeeecCCCCeEEEEEecCC
Confidence            789999999996   456655  4579999999998765         4444444 456889999999853222334589


Q ss_pred             CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |.|++||+.+.++  +..+.  +|...|++++|+|+|++|+||+.||+|+|||+.+
T Consensus       344 ~~I~iwd~~~~~~--v~~l~--gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~  395 (420)
T 4gga_A          344 NQLVIWKYPTMAK--VAELK--GHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  395 (420)
T ss_dssp             CCEEEEETTTCCE--EEEEC--CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             CEEEEEECCCCcE--EEEEc--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            9999999998864  44444  8889999999999999999999999999999853

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=3.5e-40  Score=261.29  Aligned_cols=246  Identities=17%  Similarity=0.178  Sum_probs=206.8

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc------ccceecccCcceEEEEeCCCC----C---ceEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK------LHKSFVGHGDSINEIRTQPLK----P---SLVV   70 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~------~~~~~~~h~~~v~~~~~~~~~----~---~~l~   70 (294)
                      ++.|.++|++++|+  |  + +|++|+.||.|++|++.+++      ....+.+|..+|++++|+| +    +   .+|+
T Consensus        12 ~~~h~~~i~~~~~~--~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~g~~~~~l~   85 (397)
T 1sq9_A           12 GKAHDADIFSVSAC--N--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELCLVA   85 (397)
T ss_dssp             SSCSSSCEEEEEEC--S--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEE-EEETTTEEEEEEE
T ss_pred             hhhhhcCeEEEEec--C--C-eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEec-ccccCCccccEEE
Confidence            46899999999997  5  4 89999999999999999887      7788889999999999999 7    8   8999


Q ss_pred             EeeCCCcEEEEEcCCCce-----EEEeeccCCC-----CCceeEEEEe----cCCCce-EEeeecCCcEEEEeccc----
Q 022590           71 SASKDESVRLWNVQTGIC-----ILIFAGAGGH-----RNEVLSVDFH----PSDIYR-IASCGMDNTVKIWSMKE----  131 (294)
Q Consensus        71 s~~~dg~i~vwd~~~~~~-----~~~~~~~~~~-----~~~v~~l~~~----~~~~~~-l~~~~~dg~i~~wd~~~----  131 (294)
                      +++.||.|++||+.+++.     ...+.   .|     ...|.+++|+    | ++.+ |++++.||.|++||++.    
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLD---LLDSDMKKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEEC---CSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred             EEcCCCCEEEEEccCCcccccccceeec---ccccccCCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCccccc
Confidence            999999999999998886     67776   56     5899999999    8 7888 99999999999999987    


Q ss_pred             --cccccccceeecCCCCCCCCceeeeceEEe-------ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCC
Q 022590          132 --FWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-------SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG  200 (294)
Q Consensus       132 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~  200 (294)
                        .....                  ..+...+       ..|...|.+++|+  + ++++++.|+.|++||+++++    
T Consensus       162 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~----  218 (397)
T 1sq9_A          162 SNSLTLN------------------WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR----  218 (397)
T ss_dssp             HHHTTTC------------------CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE----
T ss_pred             cccceee------------------ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc----
Confidence              22110                  0011122       4588899999997  6 99999999999999998654    


Q ss_pred             CCCceeeeeeec---C---CCCeeEEEEcccCCcceEEEEcCC---CeEEEEeccCCCceeeeeccccc-----------
Q 022590          201 EGTADILQKYPV---P---ECDIWFIKFSCDFHYNAAAIGNRE---GKIFVWELQSSPPVLIARLSHAQ-----------  260 (294)
Q Consensus       201 ~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~-----------  260 (294)
                           .+..+..   |   ...+.+++|+|++  .+|++++.|   |.|++||+++.+...  .+.  .           
T Consensus       219 -----~~~~~~~~~~h~~~~~~i~~i~~~~~~--~~l~~~~~d~~~g~i~i~d~~~~~~~~--~~~--~~~~~~~~~~~~  287 (397)
T 1sq9_A          219 -----PLYNFESQHSMINNSNSIRSVKFSPQG--SLLAIAHDSNSFGCITLYETEFGERIG--SLS--VPTHSSQASLGE  287 (397)
T ss_dssp             -----EEEEEECCC---CCCCCEEEEEECSST--TEEEEEEEETTEEEEEEEETTTCCEEE--EEC--BC--------CC
T ss_pred             -----eeEEEeccccccccCCccceEEECCCC--CEEEEEecCCCCceEEEEECCCCcccc--eec--cCcccccccccc
Confidence                 5666777   7   8899999999998  689999999   999999999886433  333  3           


Q ss_pred             --cCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          261 --SKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       261 --~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                        |...|.+++|+|++++|++++.||.|++||+++
T Consensus       288 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  322 (397)
T 1sq9_A          288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT  322 (397)
T ss_dssp             BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred             cccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence              788999999999999999999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=5.4e-40  Score=282.38  Aligned_cols=248  Identities=15%  Similarity=0.223  Sum_probs=217.0

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .+..|.+.|.+++|+  |+|+ +|++|+.||.|+|||+.+++.+..+.+|..+|++++|+| ++++|++|+.||.|++||
T Consensus         8 ~~~~h~~~v~~i~~s--p~~~-~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFH--PTEP-WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             EEEEECSCEEEEEEC--SSSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEE
T ss_pred             eeecCCCceEEEEEC--CCCC-EEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEE
Confidence            356899999999998  8998 999999999999999999999999999999999999999 889999999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.+++.+..+.   +|...|++++|+| ++.+|++++.||.|++||++..                      ......+.
T Consensus        84 ~~~~~~~~~~~---~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~----------------------~~~~~~~~  137 (814)
T 3mkq_A           84 YNTGEKVVDFE---AHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENN----------------------WALEQTFE  137 (814)
T ss_dssp             TTTCCEEEEEE---CCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGT----------------------SEEEEEEE
T ss_pred             CCCCcEEEEEe---cCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCC----------------------ceEEEEEc
Confidence            99999998888   6999999999999 8889999999999999999873                      13455677


Q ss_pred             cCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-CCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          163 VHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       163 ~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      .|...|.+++|+   ++.+++++.||.|++||++.+..         ...... +...+..++|+|.+.+.++++++.||
T Consensus       138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  208 (814)
T 3mkq_A          138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---------NFTLTTGQERGVNYVDYYPLPDKPYMITASDDL  208 (814)
T ss_dssp             CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSC---------SEEEECCCTTCCCEEEECCSTTCCEEEEECTTS
T ss_pred             CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcc---------eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC
Confidence            899999999996   56999999999999999986652         233333 34789999999943337999999999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|++||+.+++.  ...+.  .|...|.+++|+|++++|++++.||.|++||+.+
T Consensus       209 ~i~~~d~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~  259 (814)
T 3mkq_A          209 TIKIWDYQTKSC--VATLE--GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (814)
T ss_dssp             EEEEEETTTTEE--EEEEE--CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             EEEEEECCCCcE--EEEEc--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence            999999988753  33333  6778999999999999999999999999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.9e-40  Score=256.10  Aligned_cols=201  Identities=9%  Similarity=0.000  Sum_probs=160.8

Q ss_pred             ceEEEEeCCCCCceEEE--eeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccc
Q 022590           55 SINEIRTQPLKPSLVVS--ASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  132 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~  132 (294)
                      .+.+++|+| +++++++  ++.|++|+|||+.+++.+..+.    |...|.+++|+| ++.++++++.+ .+++|+..+.
T Consensus       135 ~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~~~~~~~----~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~  207 (365)
T 4h5i_A          135 YTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLTEKFEIE----TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTG  207 (365)
T ss_dssp             CEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTEEEEEEE----CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTC
T ss_pred             CEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCcEEEEeC----CCCceEEEEEcc-CCceEEeccce-eEEEEEeccC
Confidence            467899999 8888764  4579999999999999988876    888999999999 88999998855 5666666552


Q ss_pred             ccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCC----eEEEecCCCCCCCCCCCCcee
Q 022590          133 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN----EIVLWEPKMKEQSPGEGTADI  206 (294)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~  206 (294)
                      .                     .........|...|.+++|+  +.++++++.|+    .+++||+.....     ....
T Consensus       208 ~---------------------~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~-----~~~~  261 (365)
T 4h5i_A          208 S---------------------CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT-----SVLR  261 (365)
T ss_dssp             C---------------------EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE-----EEEE
T ss_pred             c---------------------ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee-----ccee
Confidence            1                     11223345688889999997  78899998887    688898875532     1223


Q ss_pred             eeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcE
Q 022590          207 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI  286 (294)
Q Consensus       207 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  286 (294)
                      ...+..+...|++++|+|++  .+||+|+.|+.|+|||++++++.  ..+ ..+|..+|++++|+|||++||+||.|++|
T Consensus       262 ~~~~~~~~~~V~~~~~Spdg--~~lasgs~D~~V~iwd~~~~~~~--~~~-~~gH~~~V~~v~fSpdg~~laS~S~D~tv  336 (365)
T 4h5i_A          262 SKQVTNRFKGITSMDVDMKG--ELAVLASNDNSIALVKLKDLSMS--KIF-KQAHSFAITEVTISPDSTYVASVSAANTI  336 (365)
T ss_dssp             EEEEESSCSCEEEEEECTTS--CEEEEEETTSCEEEEETTTTEEE--EEE-TTSSSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eeeecCCCCCeEeEEECCCC--CceEEEcCCCEEEEEECCCCcEE--EEe-cCcccCCEEEEEECCCCCEEEEEeCCCeE
Confidence            45667788899999999999  69999999999999999987632  221 12788999999999999999999999999


Q ss_pred             EEEecCC
Q 022590          287 WRWDAIP  293 (294)
Q Consensus       287 ~vw~~~~  293 (294)
                      +|||+.+
T Consensus       337 rvw~ip~  343 (365)
T 4h5i_A          337 HIIKLPL  343 (365)
T ss_dssp             EEEECCT
T ss_pred             EEEEcCC
Confidence            9999853

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.9e-40  Score=264.40  Aligned_cols=255  Identities=16%  Similarity=0.203  Sum_probs=195.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-----------ccceecccC------------cceEEEEeC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-----------LHKSFVGHG------------DSINEIRTQ   62 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~h~------------~~v~~~~~~   62 (294)
                      ++.+.|++++|+  |+|+ +||+|+.||.|+||++.+++           ....+.+|.            ..|++++|+
T Consensus        26 ~~~~~V~~v~~s--~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~  102 (447)
T 3dw8_B           26 AEADIISTVEFN--HSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL  102 (447)
T ss_dssp             CGGGSEEEEEEC--SSSS-EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEEC
T ss_pred             cccCcEEEEEEC--CCCC-EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEc
Confidence            567899999998  8998 99999999999999998876           477888998            889999999


Q ss_pred             CCCC--ceEEEeeCCCcEEEEEcCCCceEEE-------------------------------------eeccCCCCCcee
Q 022590           63 PLKP--SLVVSASKDESVRLWNVQTGICILI-------------------------------------FAGAGGHRNEVL  103 (294)
Q Consensus        63 ~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~-------------------------------------~~~~~~~~~~v~  103 (294)
                      | ++  .+|++++.|++|++||+.+++....                                     .....+|...|.
T Consensus       103 ~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  181 (447)
T 3dw8_B          103 P-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN  181 (447)
T ss_dssp             C-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred             C-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence            9 65  7899999999999999976543210                                     000236999999


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--c-ceEEE
Q 022590          104 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--G-DFILS  180 (294)
Q Consensus       104 ~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~  180 (294)
                      +++|+| ++.+|++| .|+.|++||++.........               ......+..|...|.+++|+  + ++|++
T Consensus       182 ~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~---------------~~~~~~~~~~~~~v~~~~~~p~~~~~l~s  244 (447)
T 3dw8_B          182 SISINS-DYETYLSA-DDLRINLWHLEITDRSFNIV---------------DIKPANMEELTEVITAAEFHPNSCNTFVY  244 (447)
T ss_dssp             EEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEE---------------ECCCSSGGGCCCCEEEEEECSSCTTEEEE
T ss_pred             EEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeee---------------ecccccccccCcceEEEEECCCCCcEEEE
Confidence            999999 88899998 79999999999521100000               00001356789999999997  4 79999


Q ss_pred             eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC------------CeeEEEEcccCCcceEEEEcCCCeEEEEeccC-
Q 022590          181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC------------DIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-  247 (294)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-  247 (294)
                      ++.||.|++||+++++..     ......+..+..            .+.+++|+|++  .+|++++. +.|++||++. 
T Consensus       245 ~~~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~~~~~-~~v~iwd~~~~  316 (447)
T 3dw8_B          245 SSSKGTIRLCDMRASALC-----DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG--RYMMTRDY-LSVKVWDLNME  316 (447)
T ss_dssp             EETTSCEEEEETTTCSSS-----CTTCEEECCC-----CCHHHHHTTCEEEEEECTTS--SEEEEEES-SEEEEEETTCC
T ss_pred             EeCCCeEEEEECcCCccc-----cceeeEeccCCCccccccccccCceEEEEEECCCC--CEEEEeeC-CeEEEEeCCCC
Confidence            999999999999987531     111344555554            89999999998  58999988 9999999987 


Q ss_pred             CCceeeeeccccccCC---------------CeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          248 SPPVLIARLSHAQSKS---------------PIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       248 ~~~~~~~~~~~~~~~~---------------~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .++...  +.  .|..               .+..++|+|++++|++|+.||.|++||+++
T Consensus       317 ~~~~~~--~~--~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          317 NRPVET--YQ--VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             SSCSCC--EE--SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred             ccccce--ee--ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence            543322  22  2221               133499999999999999999999999864

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.5e-40  Score=262.16  Aligned_cols=250  Identities=13%  Similarity=0.169  Sum_probs=208.7

Q ss_pred             ccccCceeEEEEEeecCC----C---ceEEEEeecCCeEEEEEcCCccc-----cceeccc-----CcceEEEEeC----
Q 022590            4 VDQKEESFYTVSWACNVD----G---IPFLVAGGINGIIRVIDVSNEKL-----HKSFVGH-----GDSINEIRTQ----   62 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~----~---~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~h-----~~~v~~~~~~----   62 (294)
                      +..|..+|++++|+  |+    |   + +|++++.||.|++|++.+++.     ...+..|     ...|.+++|+    
T Consensus        58 ~~~h~~~v~~~~~~--~~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  134 (397)
T 1sq9_A           58 HFVHKSGLHHVDVL--QAIERDAFELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND  134 (397)
T ss_dssp             EECCTTCEEEEEEE--EEEETTTEEEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred             EecCCCcEEEEEEe--cccccCCcccc-EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC
Confidence            34789999999998  66    7   7 999999999999999998887     7888888     5899999999    


Q ss_pred             CCCCce-EEEeeCCCcEEEEEcCC------CceEE-----Eeec----cCCCCCceeEEEEecCCCceEEeeecCCcEEE
Q 022590           63 PLKPSL-VVSASKDESVRLWNVQT------GICIL-----IFAG----AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI  126 (294)
Q Consensus        63 ~~~~~~-l~s~~~dg~i~vwd~~~------~~~~~-----~~~~----~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~  126 (294)
                      | ++.+ |++++.||.|++||+.+      ++.+.     .+..    ...|...|.+++|+| ++ +|++++.||.|++
T Consensus       135 ~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~i  211 (397)
T 1sq9_A          135 R-LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQI  211 (397)
T ss_dssp             ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEE
T ss_pred             C-CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-Cc-eEEEEeCCCcEEE
Confidence            8 7888 99999999999999988      66555     5531    024889999999999 77 9999999999999


Q ss_pred             EeccccccccccceeecCCCCCCCCceeeeceEEeec---C---CCceeeccee--cceEEEeeCC---CeEEEecCCCC
Q 022590          127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV---H---SNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMK  195 (294)
Q Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~  195 (294)
                      ||+++                       ..+...+..   |   ...|.+++|+  +++|++++.|   +.|++||++++
T Consensus       212 ~d~~~-----------------------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~  268 (397)
T 1sq9_A          212 SELST-----------------------LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG  268 (397)
T ss_dssp             EETTT-----------------------TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred             EECCC-----------------------CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            99987                       344556666   8   8999999996  8899999999   99999999876


Q ss_pred             CCCCCCCCceeeeeeec-------------CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc--ccc
Q 022590          196 EQSPGEGTADILQKYPV-------------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS--HAQ  260 (294)
Q Consensus       196 ~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~  260 (294)
                      +         .+..+..             +...+.+++|+|++  .+|++++.||.|++||+++.+........  ...
T Consensus       269 ~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  337 (397)
T 1sq9_A          269 E---------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG--ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  337 (397)
T ss_dssp             C---------EEEEECBC--------CCBSBSSCEEEEEECSSS--SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             c---------ccceeccCcccccccccccccCCcEEEEEECCCC--CEEEEEeCCCeEEEEEcCCCceeEEEecccCccc
Confidence            4         4566666             78899999999998  68999999999999999988654443311  013


Q ss_pred             c---------------CCCeEEEEEccCC----------CEEEEeccCCcEEEEecCC
Q 022590          261 S---------------KSPIRQTAMSYDG----------STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       261 ~---------------~~~v~~~~~s~~~----------~~l~s~~~dg~i~vw~~~~  293 (294)
                      |               ..+|++++|+|++          ++|++++.||.|++|++++
T Consensus       338 ~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          338 IEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             SGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             chhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            3               7899999999998          7999999999999999865

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.3e-40  Score=260.84  Aligned_cols=256  Identities=17%  Similarity=0.257  Sum_probs=207.6

Q ss_pred             cccCceeEEEEEeec-CCCceEEEEeecCCeEEEEEcCCccccceecc-----cCcceEEEEeCCCC----CceEEEeeC
Q 022590            5 DQKEESFYTVSWACN-VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-----HGDSINEIRTQPLK----PSLVVSASK   74 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~-~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----h~~~v~~~~~~~~~----~~~l~s~~~   74 (294)
                      +.|.++|++++|++. +++...+++++.++.|++||+.+++.+..+..     |...|++++|+| +    +.+|++|+.
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~~~   93 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTY-DSNTSHPLLAVAGS   93 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEE-CTTTCCEEEEEEET
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEecc-CCCCCCCEEEEecC
Confidence            479999999999832 12444788888888999999998887777654     557899999999 5    569999999


Q ss_pred             CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590           75 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  154 (294)
Q Consensus        75 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (294)
                      ||.|++||+.+++.+..+.   +|...|.+++|+|.++.+|++++.||.|++||++..                      
T Consensus        94 dg~i~v~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~----------------------  148 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYV---GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD----------------------  148 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEE---SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT----------------------
T ss_pred             CCEEEEEEchhceEeeeec---CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC----------------------
Confidence            9999999999999998888   699999999999977889999999999999999873                      


Q ss_pred             eeceEEe---ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCC-------------------CCCceeeeee
Q 022590          155 QFPVFIA---SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG-------------------EGTADILQKY  210 (294)
Q Consensus       155 ~~~~~~~---~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~-------------------~~~~~~~~~~  210 (294)
                       .....+   ..|...|.+++|+  +++|++++.||.|++||+++++....                   ..........
T Consensus       149 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          149 -TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             -EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             -eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence             333444   6799999999997  78999999999999999986532100                   0000112233


Q ss_pred             ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc------------eeeeeccccccCCCeEEEEEccC--CCE
Q 022590          211 PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP------------VLIARLSHAQSKSPIRQTAMSYD--GST  276 (294)
Q Consensus       211 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~~~~~v~~~~~s~~--~~~  276 (294)
                      ..+...+.+++|+  +  .++++++.||.|++||+.+.+.            .....+  ..|...|.+++|+|+  +++
T Consensus       228 ~~~~~~v~~~~~~--~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~~  301 (366)
T 3k26_A          228 DIHRNYVDCVRWL--G--DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF--DYSQCDIWYMRFSMDFWQKM  301 (366)
T ss_dssp             SSCSSCCCEEEEE--T--TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE--ECSSCCSSCCCCEECTTSSE
T ss_pred             cCCcceEEEEEEc--C--CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc--cccCCcEEEEEEcCCCCCcE
Confidence            3478889999998  3  5899999999999999987653            122233  367788999999999  999


Q ss_pred             EEEeccCCcEEEEecCC
Q 022590          277 ILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       277 l~s~~~dg~i~vw~~~~  293 (294)
                      |++|+.||.|++||+++
T Consensus       302 l~~~~~dg~i~vwd~~~  318 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEV  318 (366)
T ss_dssp             EEEECTTSCEEEEECCS
T ss_pred             EEEEecCCcEEEEECCC
Confidence            99999999999999874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.9e-40  Score=257.05  Aligned_cols=266  Identities=16%  Similarity=0.146  Sum_probs=208.5

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce--ecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--FVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      +..|...|.+++|+  |+++ +|++++.||.|++||+.+++....  +..|...|.+++|+| ++++|++++.||.|++|
T Consensus        48 ~~~h~~~v~~~~~~--~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           48 LKEHNGQVTGVDWA--PDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EECCSSCEEEEEEE--TTTT-EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEE
T ss_pred             ecCCCCcccEEEEe--CCCC-EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEE
Confidence            45799999999998  8898 999999999999999988864443  467899999999999 88999999999999999


Q ss_pred             EcCCCce---EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           82 NVQTGIC---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        82 d~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      |+..++.   ...+.  .+|...|.+++|+| ++.+|++++.||.|++||++............  ..   .........
T Consensus       124 d~~~~~~~~~~~~~~--~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~---~~~~~~~~~  195 (372)
T 1k8k_C          124 YFEQENDWWVCKHIK--KPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP--WG---SKMPFGELM  195 (372)
T ss_dssp             EEETTTTEEEEEEEC--TTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBT--TB---SCCCTTCEE
T ss_pred             EecCCCcceeeeeee--cccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccc--cc---cccchhhhe
Confidence            9988773   22232  26899999999999 88999999999999999987422111000000  00   000112345


Q ss_pred             EEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          159 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      ..+..|...|.++.|+  +++|++++.|+.|++||+++++         .+..+..+...+.+++|+|++  .++++| .
T Consensus       196 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~  263 (372)
T 1k8k_C          196 FESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM---------AVATLASETLPLLAVTFITES--SLVAAG-H  263 (372)
T ss_dssp             EECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT---------EEEEEECSSCCEEEEEEEETT--EEEEEE-T
T ss_pred             EecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc---------eeEEEccCCCCeEEEEEecCC--CEEEEE-e
Confidence            5666899999999996  7799999999999999998765         577778888899999999998  577777 8


Q ss_pred             CCeEEEEeccC--CCceeeee----------------------------------cc-ccccCCCeEEEEEc-cCC---C
Q 022590          237 EGKIFVWELQS--SPPVLIAR----------------------------------LS-HAQSKSPIRQTAMS-YDG---S  275 (294)
Q Consensus       237 dg~i~i~d~~~--~~~~~~~~----------------------------------~~-~~~~~~~v~~~~~s-~~~---~  275 (294)
                      |+.|++|++..  ++......                                  .. ..+|..+|++++|. ++|   +
T Consensus       264 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~  343 (372)
T 1k8k_C          264 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS  343 (372)
T ss_dssp             TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred             CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence            99999999988  32101000                                  11 23788999999976 666   9


Q ss_pred             EEEEeccCCcEEEEecCC
Q 022590          276 TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       276 ~l~s~~~dg~i~vw~~~~  293 (294)
                      +|++|+.||.|++||+++
T Consensus       344 ~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          344 QFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             EEEEEETTSEEEEEEHHH
T ss_pred             eEEEecCCCceEEEEecC
Confidence            999999999999999853

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-40  Score=268.68  Aligned_cols=248  Identities=10%  Similarity=-0.017  Sum_probs=194.5

Q ss_pred             cccCceeEEEEEeec----CCCceEEEEeecCCeEEEEEcCCccc-----------cceecccCcceEEEEeCCCCCceE
Q 022590            5 DQKEESFYTVSWACN----VDGIPFLVAGGINGIIRVIDVSNEKL-----------HKSFVGHGDSINEIRTQPLKPSLV   69 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~----~~~~~~l~~~~~dg~i~iw~~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~l   69 (294)
                      ..|.+.|++++|++.    +++. +||+++.||+|++||+.+++.           ...+.+|...|++++|++ + ..|
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~-~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~-~~l  280 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVG-CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS-P-TTV  280 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSC-EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS-S-SEE
T ss_pred             EecCCcEEEEEECCCCCCCCCCc-eEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC-C-CeE
Confidence            456788999999843    2356 999999999999999987642           236778999999999998 5 489


Q ss_pred             EEeeCCCcEEEEEcCCCc-eEEEeeccCCCCCceeEE--EEecCCC-ceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590           70 VSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSV--DFHPSDI-YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL  145 (294)
Q Consensus        70 ~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~l--~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  145 (294)
                      ++|+.||+|++||++++. ....+.   +|...|+++  .|+| ++ .+|++|+.|++|++||+++..            
T Consensus       281 asgs~DgtV~lWD~~~~~~~~~~~~---~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~------------  344 (524)
T 2j04_B          281 VCGFKNGFVAEFDLTDPEVPSFYDQ---VHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIA------------  344 (524)
T ss_dssp             EEEETTSEEEEEETTBCSSCSEEEE---CSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHH------------
T ss_pred             EEEeCCCEEEEEECCCCCCceEEee---cccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCC------------
Confidence            999999999999998764 334455   699999999  5666 66 889999999999999999732            


Q ss_pred             CCCCCCceeeeceEEeecCC--Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEE
Q 022590          146 PSKFPTKYVQFPVFIASVHS--NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK  221 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  221 (294)
                                 ....+.+|.  ..|.+++|+  +..+++++.|++|++||++.+.         .+..+..|...|++++
T Consensus       345 -----------~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~---------~~~~l~gH~~~V~sva  404 (524)
T 2j04_B          345 -----------TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF---------AVHPLVSRETTITAIG  404 (524)
T ss_dssp             -----------HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT---------CCEEEEECSSCEEEEE
T ss_pred             -----------cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc---------cceeeecCCCceEEEE
Confidence                       222333443  247889997  6689999999999999998765         3455667899999999


Q ss_pred             EcccCCcceEEEEcCCCeEEEEeccCCCce------------eee----------------------------ecccccc
Q 022590          222 FSCDFHYNAAAIGNREGKIFVWELQSSPPV------------LIA----------------------------RLSHAQS  261 (294)
Q Consensus       222 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------~~~----------------------------~~~~~~~  261 (294)
                      |+|++  .+|++|+.||.|++||+......            ...                            .....+|
T Consensus       405 ~Sp~g--~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh  482 (524)
T 2j04_B          405 VSRLH--PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAH  482 (524)
T ss_dssp             CCSSC--CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------C
T ss_pred             eCCCC--CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCC
Confidence            99998  58999999999999986432100            000                            0112357


Q ss_pred             CCCeEEEEEccCCC---EEEEeccCCcEEEEecCC
Q 022590          262 KSPIRQTAMSYDGS---TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       262 ~~~v~~~~~s~~~~---~l~s~~~dg~i~vw~~~~  293 (294)
                      ..+|.+++|+|+++   .||+|+.||.|+||+++-
T Consensus       483 ~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          483 GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            78999999999964   999999999999999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-41  Score=272.73  Aligned_cols=244  Identities=11%  Similarity=0.159  Sum_probs=189.7

Q ss_pred             cCceeEEEEEeecCCCc------eEEEE-------------------eecCCeEEEEEcCCcccc----ceecccCcceE
Q 022590            7 KEESFYTVSWACNVDGI------PFLVA-------------------GGINGIIRVIDVSNEKLH----KSFVGHGDSIN   57 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~------~~l~~-------------------~~~dg~i~iw~~~~~~~~----~~~~~h~~~v~   57 (294)
                      +.+.|++++|++.+.+.      ++||+                   ++.|++|+||++.+++..    ..+.+|.+.|.
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            56789999998654221      26666                   457789999999887643    34567889999


Q ss_pred             EEEeCCC-----CCceEEEeeCCCcEEEEEcCCCceE-----------EEeeccCCCCCceeEEEEecCCCceEEeeecC
Q 022590           58 EIRTQPL-----KPSLVVSASKDESVRLWNVQTGICI-----------LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD  121 (294)
Q Consensus        58 ~~~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d  121 (294)
                      +++|+|.     ++.+||+++.||+|++||+.++...           ..+.   +|...|++++|+| ++ .|++|+.|
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~---~h~~~v~sv~~s~-~~-~lasgs~D  286 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS---LADSLITTFDFLS-PT-TVVCGFKN  286 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC---CTTTCEEEEEESS-SS-EEEEEETT
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE---cCCCCEEEEEecC-CC-eEEEEeCC
Confidence            9999993     2579999999999999999866421           2334   6999999999997 54 79999999


Q ss_pred             CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeec--cee--c-ceEEEeeCCCeEEEecCCCCC
Q 022590          122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN--RWL--G-DFILSKSVDNEIVLWEPKMKE  196 (294)
Q Consensus       122 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~--~-~~l~~~~~d~~i~iwd~~~~~  196 (294)
                      |+|++||+++.                      ..+...+..|...|.++  .|+  + .+|++++.|++|++||+++++
T Consensus       287 gtV~lWD~~~~----------------------~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~  344 (524)
T 2j04_B          287 GFVAEFDLTDP----------------------EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA  344 (524)
T ss_dssp             SEEEEEETTBC----------------------SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred             CEEEEEECCCC----------------------CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence            99999999862                      12345678899999999  455  4 689999999999999998754


Q ss_pred             CCCCCCCceeeeeeecCC--CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590          197 QSPGEGTADILQKYPVPE--CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (294)
                      .         ...+..+.  ..+.+++|+|++  ..+++++.|+.|++||+++....  ..+.  +|...|++++|+|+|
T Consensus       345 ~---------~~~~~~~~~~~~v~~v~fsp~~--~~l~s~~~d~tv~lwd~~~~~~~--~~l~--gH~~~V~sva~Sp~g  409 (524)
T 2j04_B          345 T---------TKTTVSRFRGSNLVPVVYCPQI--YSYIYSDGASSLRAVPSRAAFAV--HPLV--SRETTITAIGVSRLH  409 (524)
T ss_dssp             H---------HCEEEEECSCCSCCCEEEETTT--TEEEEECSSSEEEEEETTCTTCC--EEEE--ECSSCEEEEECCSSC
T ss_pred             c---------ccccccccccCcccceEeCCCc--CeEEEeCCCCcEEEEECcccccc--eeee--cCCCceEEEEeCCCC
Confidence            2         22222222  347889999998  47999999999999999987632  2333  788999999999999


Q ss_pred             CEEEEeccCCcEEEEecC
Q 022590          275 STILSCCEDGAIWRWDAI  292 (294)
Q Consensus       275 ~~l~s~~~dg~i~vw~~~  292 (294)
                      ++|++|+.||+|++||+.
T Consensus       410 ~~l~Sgs~Dgtv~lwd~~  427 (524)
T 2j04_B          410 PMVLAGSADGSLIITNAA  427 (524)
T ss_dssp             CBCEEEETTTEEECCBSC
T ss_pred             CeEEEEECCCEEEEEech
Confidence            999999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-41  Score=268.10  Aligned_cols=256  Identities=18%  Similarity=0.277  Sum_probs=211.4

Q ss_pred             ccccCceeEEEEEeecCC-CceEEEEeecCCeEEEEEcCCcc------ccc---eecccCcceEEEEeCCCCCceEEEee
Q 022590            4 VDQKEESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEK------LHK---SFVGHGDSINEIRTQPLKPSLVVSAS   73 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~------~~~---~~~~h~~~v~~~~~~~~~~~~l~s~~   73 (294)
                      +..|.+.|.+++|+  |+ ++ +|++++.||.|++||+.+++      ...   .+..|...|.+++|+|+++.+|++++
T Consensus       109 ~~~h~~~v~~~~~~--~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  185 (416)
T 2pm9_A          109 FSNHSSSVKTVKFN--AKQDN-VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG  185 (416)
T ss_dssp             CCCSSSCCCEEEEC--SSSTT-BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES
T ss_pred             ccCCccceEEEEEc--CCCCC-EEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc
Confidence            45799999999998  77 66 99999999999999998876      333   34679999999999994488999999


Q ss_pred             CCCcEEEEEcCCCceEEEeeccC---CCCCceeEEEEecCCCceEEeeecCC---cEEEEeccccccccccceeecCCCC
Q 022590           74 KDESVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPS  147 (294)
Q Consensus        74 ~dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~  147 (294)
                      .||.|++||+++++.+..+....   +|...|.+++|+|++..++++++.|+   .|++||++...              
T Consensus       186 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~--------------  251 (416)
T 2pm9_A          186 SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN--------------  251 (416)
T ss_dssp             SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT--------------
T ss_pred             CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC--------------
Confidence            99999999999999888877311   12789999999994457899999998   99999999731              


Q ss_pred             CCCCceeeeceEEee-cCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc
Q 022590          148 KFPTKYVQFPVFIAS-VHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS  223 (294)
Q Consensus       148 ~~~~~~~~~~~~~~~-~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  223 (294)
                              .+...+. .|...|.+++|+   +++|++++.|+.|++||+++++         .+..+..|...+.+++|+
T Consensus       252 --------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~---------~~~~~~~~~~~v~~~~~s  314 (416)
T 2pm9_A          252 --------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAE---------QLSQFPARGNWCFKTKFA  314 (416)
T ss_dssp             --------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCC---------EEEEEECSSSCCCCEEEC
T ss_pred             --------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCc---------cceeecCCCCceEEEEEC
Confidence                    2334455 789999999995   6899999999999999998765         677788889999999999


Q ss_pred             ccCCcceEEEEcCCCeEEEEeccCCCceeeee-------------cc------------------ccccCCCeEEEEEcc
Q 022590          224 CDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-------------LS------------------HAQSKSPIRQTAMSY  272 (294)
Q Consensus       224 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~------------------~~~~~~~v~~~~~s~  272 (294)
                      |++. .++++++.||.|++||+.+.+......             +.                  ...+..++.+++|+|
T Consensus       315 ~~~~-~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  393 (416)
T 2pm9_A          315 PEAP-DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF  393 (416)
T ss_dssp             TTCT-TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET
T ss_pred             CCCC-CEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee
Confidence            9974 589999999999999998765322210             00                  011567888999999


Q ss_pred             CCCEEEEeccCCcEEEEecCCC
Q 022590          273 DGSTILSCCEDGAIWRWDAIPT  294 (294)
Q Consensus       273 ~~~~l~s~~~dg~i~vw~~~~~  294 (294)
                      +|++|++++.||.|+||++.++
T Consensus       394 dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          394 GGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             TTEEECBCTTSSCBCCBCCCCC
T ss_pred             CCeEEEEeCCCCeEEEEEeccC
Confidence            9999999999999999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.7e-40  Score=257.52  Aligned_cols=252  Identities=12%  Similarity=0.209  Sum_probs=205.1

Q ss_pred             ccCceeEEEEEeecCC---CceEEEEeecCCeEEEEEcCCcc-ccceecccCcceEEEE------eCCCCCceEEEeeCC
Q 022590            6 QKEESFYTVSWACNVD---GIPFLVAGGINGIIRVIDVSNEK-LHKSFVGHGDSINEIR------TQPLKPSLVVSASKD   75 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~------~~~~~~~~l~s~~~d   75 (294)
                      .|..+|.+++|+  |+   |+ +|++|+.||.|++||+.+++ .+..+.+|...|.+++      |+| ++++|++++.|
T Consensus        63 ~~~~~v~~~~~~--~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d  138 (357)
T 3i2n_A           63 EKAKPIKCGTFG--ATSLQQR-YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRD  138 (357)
T ss_dssp             EESSCEEEEECT--TCCTTTC-CEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETT
T ss_pred             cccCcEEEEEEc--CCCCCCc-eEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC-CccEEEEEeCC
Confidence            688999999998  66   56 99999999999999999888 8889999999999995      567 88899999999


Q ss_pred             CcEEEEEcCCCc-eEEEeeccCCC-CCceeEEE----EecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCC
Q 022590           76 ESVRLWNVQTGI-CILIFAGAGGH-RNEVLSVD----FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKF  149 (294)
Q Consensus        76 g~i~vwd~~~~~-~~~~~~~~~~~-~~~v~~l~----~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  149 (294)
                      |.|++||+.+++ .+..+....++ ...+.+++    |+| ++.+|++++.||.|++||++...                
T Consensus       139 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~----------------  201 (357)
T 3i2n_A          139 GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMA----------------  201 (357)
T ss_dssp             SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEEEEETTTTE----------------
T ss_pred             CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEEEEECccCc----------------
Confidence            999999999887 66666532222 34899998    677 88999999999999999999732                


Q ss_pred             CCceeeeceEEeecCCCceeeccee-----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590          150 PTKYVQFPVFIASVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  224 (294)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (294)
                              ......|...|.++.|+     ++++++++.||.|++||+++.+...    .........+...+.+++|+|
T Consensus       202 --------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~  269 (357)
T 3i2n_A          202 --------LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK----GFASVSEKAHKSTVWQVRHLP  269 (357)
T ss_dssp             --------EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT----EEEEEEEECCSSCEEEEEEET
T ss_pred             --------eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc----ceeeeccCCCcCCEEEEEECC
Confidence                    13345678899999996     5799999999999999998765311    011224457889999999999


Q ss_pred             cCCcceEEEEcCCCeEEEEeccCCCce-----------------eeeeccccccCCCeEEEEEccCCCEEE-EeccCCcE
Q 022590          225 DFHYNAAAIGNREGKIFVWELQSSPPV-----------------LIARLSHAQSKSPIRQTAMSYDGSTIL-SCCEDGAI  286 (294)
Q Consensus       225 ~~~~~~l~~~~~dg~i~i~d~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i  286 (294)
                      ++. .++++++.||.|++||++.....                 ....  ...|..+|++++|+|++++|+ +++.||.|
T Consensus       270 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i  346 (357)
T 3i2n_A          270 QNR-ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN--VTLSTQPISSLDWSPDKRGLCVCSSFDQTV  346 (357)
T ss_dssp             TEE-EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE--EECCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred             CCC-cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec--cccCCCCeeEEEEcCCCCeEEEEecCCCcE
Confidence            983 38999999999999999875432                 2222  337889999999999999998 89999999


Q ss_pred             EEEecCC
Q 022590          287 WRWDAIP  293 (294)
Q Consensus       287 ~vw~~~~  293 (294)
                      ++||+..
T Consensus       347 ~iw~~~~  353 (357)
T 3i2n_A          347 RVLIVTK  353 (357)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9999864

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.7e-40  Score=256.41  Aligned_cols=249  Identities=14%  Similarity=0.207  Sum_probs=200.7

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeec---CCeEEEEEcCCcccccee-cccCcceEEEEeCCCC--CceEEEeeCCCcE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLK--PSLVVSASKDESV   78 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~~--~~~l~s~~~dg~i   78 (294)
                      +.|.+.|++++|+  |++..++++|+.   ||.|++||+.+++..... .+|..+|++++|+|+.  +.+|++|+.||.|
T Consensus        15 ~~h~~~v~~~~~~--p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           15 KGFNYTVFDCKWV--PCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             EECSSCEEEEEEC--TTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             cCCCCceEEEEEc--CCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            4699999999998  888756777776   999999999988765443 3799999999999932  6999999999999


Q ss_pred             EEEEcCCCc-eEEEeeccCCCCCceeEEEE------ecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           79 RLWNVQTGI-CILIFAGAGGHRNEVLSVDF------HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        79 ~vwd~~~~~-~~~~~~~~~~~~~~v~~l~~------~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      ++||+.+++ .+..+.   +|...|.++.|      +| ++.+|++++.||.|++||++...                  
T Consensus        93 ~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~------------------  150 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSVK---GHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKD------------------  150 (357)
T ss_dssp             EEECTTSCSSCSEEEC---CCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCS------------------
T ss_pred             EEEeCCCCCccEEEEE---ecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCC------------------
Confidence            999999888 777777   69999999965      56 78899999999999999999732                  


Q ss_pred             ceeeeceEEeecCCC----ceeecc----e--ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEE
Q 022590          152 KYVQFPVFIASVHSN----YVDCNR----W--LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK  221 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~----~i~~~~----~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  221 (294)
                          .+...+..|..    .+.++.    |  +++++++++.|+.|++||+++++         . .....+...+.+++
T Consensus       151 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~-~~~~~~~~~v~~~~  216 (357)
T 3i2n_A          151 ----DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA---------L-RWETNIKNGVCSLE  216 (357)
T ss_dssp             ----SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE---------E-EEEEECSSCEEEEE
T ss_pred             ----CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc---------e-eeecCCCCceEEEE
Confidence                12333333333    677777    3  38899999999999999998764         2 33355678899999


Q ss_pred             Ecc---cCCcceEEEEcCCCeEEEEeccCCCceeeeec-cccccCCCeEEEEEccCCC-EEEEeccCCcEEEEecCC
Q 022590          222 FSC---DFHYNAAAIGNREGKIFVWELQSSPPVLIARL-SHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       222 ~~~---~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~~  293 (294)
                      |+|   ++  .++++++.||.|++||+++.+....... ....|...|++++|+|+++ +|++++.||.|++||++.
T Consensus       217 ~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          217 FDRKDISM--NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             ESCSSSSC--CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             cCCCCCCC--CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            999   66  6899999999999999987654332221 1236788999999999998 899999999999999863

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-39  Score=258.47  Aligned_cols=244  Identities=21%  Similarity=0.273  Sum_probs=203.0

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~   86 (294)
                      |.+.|++++|+  |+++ +|++|+.||.|++|| .+++.+..+..|...|.+++|+| ++++|++++.||.|++||+.++
T Consensus       107 ~~~~v~~~~~s--~~~~-~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~  181 (425)
T 1r5m_A          107 TTNQVTCLAWS--HDGN-SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISG  181 (425)
T ss_dssp             -CBCEEEEEEC--TTSS-EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTT
T ss_pred             CCCceEEEEEc--CCCC-EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCC
Confidence            68899999998  8998 999999999999999 67888889999999999999999 8899999999999999999887


Q ss_pred             ceEEEeec-----------------------------------------------------cCCCCCceeEEEEecCCCc
Q 022590           87 ICILIFAG-----------------------------------------------------AGGHRNEVLSVDFHPSDIY  113 (294)
Q Consensus        87 ~~~~~~~~-----------------------------------------------------~~~~~~~v~~l~~~~~~~~  113 (294)
                      +.+..+..                                                     ...|...|.+++|+| ++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~  260 (425)
T 1r5m_A          182 TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNK  260 (425)
T ss_dssp             EEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTT
T ss_pred             cEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCC
Confidence            76654431                                                     114666777777777 666


Q ss_pred             eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceec-ceEEEeeCCCeEEEecC
Q 022590          114 RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-DFILSKSVDNEIVLWEP  192 (294)
Q Consensus       114 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~d~~i~iwd~  192 (294)
                      +|++++.||.|++||++.                       ......+..|...|.++.|++ .++++++.|+.|++||+
T Consensus       261 ~l~~~~~d~~i~i~d~~~-----------------------~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~  317 (425)
T 1r5m_A          261 LLLSASDDGTLRIWHGGN-----------------------GNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSL  317 (425)
T ss_dssp             EEEEEETTSCEEEECSSS-----------------------BSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEET
T ss_pred             EEEEEcCCCEEEEEECCC-----------------------CccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEEC
Confidence            777777777788887776                       334556677999999999982 39999999999999999


Q ss_pred             CCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc------------------eeee
Q 022590          193 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP------------------VLIA  254 (294)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------------~~~~  254 (294)
                      ++++         .+..+..+...+.+++|+|++  .+|++++.||.|++||+++.+.                  ....
T Consensus       318 ~~~~---------~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (425)
T 1r5m_A          318 KQNT---------LLALSIVDGVPIFAGRISQDG--QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYA  386 (425)
T ss_dssp             TTTE---------EEEEEECTTCCEEEEEECTTS--SEEEEEETTSCEEEEECHHHHC--------------CEECCEEE
T ss_pred             CCCc---------EeEecccCCccEEEEEEcCCC--CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhh
Confidence            8654         567777888899999999998  6899999999999999987640                  0223


Q ss_pred             eccccccCC--CeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          255 RLSHAQSKS--PIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       255 ~~~~~~~~~--~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .+.  .|..  .|++++|+|++++|++++.||.|++|+++
T Consensus       387 ~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          387 SYQ--SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEC--CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             hhc--CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            333  5544  89999999999999999999999999985

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=9.9e-40  Score=259.08  Aligned_cols=248  Identities=17%  Similarity=0.253  Sum_probs=202.4

Q ss_pred             cccccCceeEEEEEeecC-CCceEEEEeecCCeEEEEEcCCc-------cccceecccCcceEEEEeCCCCCceEEEeeC
Q 022590            3 YVDQKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNE-------KLHKSFVGHGDSINEIRTQPLKPSLVVSASK   74 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   74 (294)
                      .+..|.+.|++++|+  | +++ +|++|+.||.|++||+.++       +.+..+.+|...|++++|+|++..+|++++.
T Consensus        76 ~~~~h~~~V~~~~~~--p~~~~-~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~  152 (402)
T 2aq5_A           76 LVCGHTAPVLDIAWC--PHNDN-VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC  152 (402)
T ss_dssp             CBCCCSSCEEEEEEC--TTCTT-EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEET
T ss_pred             eEecCCCCEEEEEeC--CCCCC-EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcC
Confidence            356899999999998  7 777 9999999999999999887       5678889999999999999933479999999


Q ss_pred             CCcEEEEEcCCCceEEEe--eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCc
Q 022590           75 DESVRLWNVQTGICILIF--AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  152 (294)
Q Consensus        75 dg~i~vwd~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (294)
                      ||+|++||+.+++.+..+  .   +|...|.+++|+| ++.+|++++.||.|++||+++.                    
T Consensus       153 dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~--------------------  208 (402)
T 2aq5_A          153 DNVILVWDVGTGAAVLTLGPD---VHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKG--------------------  208 (402)
T ss_dssp             TSCEEEEETTTTEEEEEECTT---TCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTT--------------------
T ss_pred             CCEEEEEECCCCCccEEEecC---CCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCC--------------------
Confidence            999999999999988887  4   6999999999999 8899999999999999999973                    


Q ss_pred             eeeeceEEe-ecCCCc-eeeccee--cceEEEe---eCCCeEEEecCCCCCCCCCCCCceeeeee-ecCCCCeeEEEEcc
Q 022590          153 YVQFPVFIA-SVHSNY-VDCNRWL--GDFILSK---SVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSC  224 (294)
Q Consensus       153 ~~~~~~~~~-~~~~~~-i~~~~~~--~~~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~  224 (294)
                         .....+ ..|... +.++.|+  +.+++++   +.|+.|++||+++.+.        .+... ..+...+..++|+|
T Consensus       209 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~v~~~~~s~  277 (402)
T 2aq5_A          209 ---TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE--------PLSLQELDTSSGVLLPFFDP  277 (402)
T ss_dssp             ---EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS--------CSEEEECCCCSSCEEEEEET
T ss_pred             ---ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC--------CceEEeccCCCceeEEEEcC
Confidence               334444 567665 7888886  7788888   7899999999987653        11122 23556799999999


Q ss_pred             cCCcceE-EEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          225 DFHYNAA-AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       225 ~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++.  ++ ++|+.||.|++||+.+.++. ...+....+..+|.+++|+|++.++++  .++.+++|++.+
T Consensus       278 ~~~--~l~~~g~~dg~i~i~d~~~~~~~-~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          278 DTN--IVYLCGKGDSSIRYFEITSEAPF-LHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             TTT--EEEEEETTCSCEEEEEECSSTTC-EEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred             CCC--EEEEEEcCCCeEEEEEecCCCcc-eEeecccccCCcccceEEeccccccee--cceeEEEEEcCC
Confidence            984  55 56778999999999988741 222221135688999999999998775  466899999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4e-40  Score=259.29  Aligned_cols=266  Identities=13%  Similarity=0.091  Sum_probs=195.0

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc---ccceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      .+..|.+.|++++|+  |+++ +|++++.||.|++||+.+++   ....+.+|...|++++|+| ++++|++++.|+.|+
T Consensus        50 ~~~~h~~~v~~~~~s--~~~~-~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~  125 (377)
T 3dwl_C           50 TFSDHDKIVTCVDWA--PKSN-RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVIS  125 (377)
T ss_dssp             CBCCCSSCEEEEEEC--TTTC-CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEE
T ss_pred             EEecCCceEEEEEEe--CCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEE
Confidence            456899999999998  8888 99999999999999999877   5667788999999999999 889999999999999


Q ss_pred             EEEcCCCce---EEEeeccCC-CCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC-Ccee
Q 022590           80 LWNVQTGIC---ILIFAGAGG-HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP-TKYV  154 (294)
Q Consensus        80 vwd~~~~~~---~~~~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~  154 (294)
                      +||+++++.   ...+.   + |...|.+++|+| ++.+|++++.|+.|++||++.........      +.... ....
T Consensus       126 iwd~~~~~~~~~~~~~~---~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~~~~  195 (377)
T 3dwl_C          126 VCYFEQENDWWVSKHLK---RPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPE------ASVWGSRLPF  195 (377)
T ss_dssp             ECCC-----CCCCEEEC---SSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCC------SCSSCSCCCE
T ss_pred             EEEECCcccceeeeEee---cccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCcc------ccccccccch
Confidence            999998873   55555   4 999999999999 88999999999999999997532111100      00000 0011


Q ss_pred             eeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          155 QFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       155 ~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      ......+ .|...|.+++|+  +++|++++.|+.|++||+++++.     ....+..+..|...+.+++|+|++  .+|+
T Consensus       196 ~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~v~~~~~s~~~--~~l~  267 (377)
T 3dwl_C          196 NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ-----PPRALITVKLSQLPLRSLLWANES--AIVA  267 (377)
T ss_dssp             EEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS-----CEEECCCEECSSSCEEEEEEEETT--EEEE
T ss_pred             hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC-----cceeeEeecCCCCceEEEEEcCCC--CEEE
Confidence            2334444 899999999997  78999999999999999998763     222366777888999999999998  5888


Q ss_pred             EEcCCCeEEEEeccCCCceeeee----------------------------------c--------------cccccCCC
Q 022590          233 IGNREGKIFVWELQSSPPVLIAR----------------------------------L--------------SHAQSKSP  264 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~~~~~~----------------------------------~--------------~~~~~~~~  264 (294)
                      +|+.++.+ +|+...........                                  +              ....|...
T Consensus       268 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~  346 (377)
T 3dwl_C          268 AGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNM  346 (377)
T ss_dssp             EESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSC
T ss_pred             EEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccce
Confidence            88766655 77665221000000                                  0              01138899


Q ss_pred             eEEEEEccCC-C---EEEEeccCCcEEEEec
Q 022590          265 IRQTAMSYDG-S---TILSCCEDGAIWRWDA  291 (294)
Q Consensus       265 v~~~~~s~~~-~---~l~s~~~dg~i~vw~~  291 (294)
                      |+++++.+.. .   .|+||+.||.|++||+
T Consensus       347 i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          347 IATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             eEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence            9999976644 3   6999999999999986

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.1e-39  Score=249.66  Aligned_cols=255  Identities=7%  Similarity=0.014  Sum_probs=202.5

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc---ccceecccCcceEEEEeCCCCCc-eEEEeeCCCcEEE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRL   80 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~v   80 (294)
                      +.|++.|++++|+  |+++ +|++++.||.|++|++.+++   ....+..|...|++++|+| +++ +|++|+.||.|++
T Consensus         8 ~~h~~~v~~~~~s--~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            8 QAPKDYISDIKII--PSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SCCSSCEEEEEEE--GGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEE
T ss_pred             cCCCCcEEEEEEc--CCCC-EEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEE
Confidence            4899999999998  8888 99999999999999998877   3455668999999999999 788 9999999999999


Q ss_pred             EEc-CCCceEEEeeccCC--CCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           81 WNV-QTGICILIFAGAGG--HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        81 wd~-~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      ||+ .+++. ..+.   +  |...|.+++|+|  +.+|++++.|+.|++||++........              ....+
T Consensus        84 wd~~~~~~~-~~~~---~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~--------------~~~~~  143 (342)
T 1yfq_A           84 VDLIGSPSF-QALT---NNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIA--------------VKNLN  143 (342)
T ss_dssp             ECSSSSSSE-EECB---SCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEE--------------EEESC
T ss_pred             EEeccCCce-Eecc---ccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEccccccccccc--------------ccCCe
Confidence            999 87765 4444   6  999999999998  678999999999999999862110000              00011


Q ss_pred             eEEeecCCCceeecceecceEEEeeCCCeEEEecCCC-CCCCCCCCCceeeeeeecCCCCeeEEEEcc-cCCcceEEEEc
Q 022590          158 VFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVPECDIWFIKFSC-DFHYNAAAIGN  235 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~  235 (294)
                      ...+. |...+.+++|+++.+++++.|+.|++||++. ...       ........+...+.+++|+| ++  .++++++
T Consensus       144 ~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~i~~i~~~~~~~--~~l~~~~  213 (342)
T 1yfq_A          144 SNNTK-VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD-------NGTIEESGLKYQIRDVALLPKEQ--EGYACSS  213 (342)
T ss_dssp             SSSSS-SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC-------CCEEEECSCSSCEEEEEECSGGG--CEEEEEE
T ss_pred             eeEEe-eCCceEEEEecCCcEEEEeCCCeEEEEECCccccc-------cceeeecCCCCceeEEEECCCCC--CEEEEEe
Confidence            11222 7888999999977799999999999999987 432       12233445667899999999 88  6899999


Q ss_pred             CCCeEEEEeccCC------Cceeeeecccc-----ccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          236 REGKIFVWELQSS------PPVLIARLSHA-----QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       236 ~dg~i~i~d~~~~------~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .||.|++|+++..      +..........     .|..+|.+++|+|++++|++++.||.|++||+++
T Consensus       214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~  282 (342)
T 1yfq_A          214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence            9999999999876      32222221100     2345999999999999999999999999999874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.7e-38  Score=253.51  Aligned_cols=253  Identities=12%  Similarity=0.138  Sum_probs=205.0

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|.+.|++++|+  |+++ +|++|+.||.|++||+.+++.+..+.+|...|++++|+| ++.+|++++.||+|++||+
T Consensus       135 ~~~h~~~v~~~~~~--~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~  210 (420)
T 3vl1_A          135 DQAHVSEITKLKFF--PSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWEC  210 (420)
T ss_dssp             TTSSSSCEEEEEEC--TTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEET
T ss_pred             cccccCccEEEEEC--CCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeEC
Confidence            45899999999998  8998 999999999999999999999999999999999999999 8899999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEE---------------------ecCCCceEEeeecCCcEEEEeccccccccccceee
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDF---------------------HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW  142 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~---------------------~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  142 (294)
                      ++++.+..+.....|...+.+++|                     +| ++.+|++|+.||.|++||++...         
T Consensus       211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~---------  280 (420)
T 3vl1_A          211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKE---------  280 (420)
T ss_dssp             TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCC---------
T ss_pred             CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCc---------
Confidence            999998888754445555555555                     66 78899999999999999998732         


Q ss_pred             cCCCCCCCCceeeeceEEeecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-CCCCee
Q 022590          143 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIW  218 (294)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~i~  218 (294)
                                   ........|...|.+++|+  +. +|++++.||.|++||+++++.        .+..+.. +...+.
T Consensus       281 -------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--------~~~~~~~~~~~~v~  339 (420)
T 3vl1_A          281 -------------QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--------PVGEFLINEGTPIN  339 (420)
T ss_dssp             -------------EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--------CSEEEEESTTSCEE
T ss_pred             -------------eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC--------chhhhhccCCCCce
Confidence                         1222334688899999998  44 999999999999999997653        2444444 566777


Q ss_pred             EEEEcccCCcceEEEEcCCCeEEEEeccCCCcee-eeec----cccccCCCeEEEEEccCCC---EEEEeccCCcEEEEe
Q 022590          219 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL-IARL----SHAQSKSPIRQTAMSYDGS---TILSCCEDGAIWRWD  290 (294)
Q Consensus       219 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~----~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~vw~  290 (294)
                      .+.+ +++  .+|++++.||.|++|++...+... ....    ....+...|.+++|+|+++   .|++++.+|.+.+|+
T Consensus       340 ~~~~-~~~--~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          340 NVYF-AAG--ALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             EEEE-ETT--EEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             EEEe-CCC--CEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence            7755 455  589999999999999998743211 1100    1236678899999999999   777778899999999


Q ss_pred             cCCC
Q 022590          291 AIPT  294 (294)
Q Consensus       291 ~~~~  294 (294)
                      ++.+
T Consensus       417 ~~~~  420 (420)
T 3vl1_A          417 LSNP  420 (420)
T ss_dssp             SCC-
T ss_pred             ccCC
Confidence            9753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-39  Score=261.08  Aligned_cols=251  Identities=10%  Similarity=0.134  Sum_probs=198.2

Q ss_pred             cccCceeEEEEEeecC-CCceEEEEeecCCeEEEEEcCC---ccccc-eec-ccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590            5 DQKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSN---EKLHK-SFV-GHGDSINEIRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~---~~~~~-~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i   78 (294)
                      +.|.+.|++++|+  | +++ +|++|+.||.|++||+.+   +.... .+. .|..+|++++|+| ++.+|++|+.||+|
T Consensus        60 ~~h~~~V~~~~~s--~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~s~dg~i  135 (437)
T 3gre_A           60 ENEPNSITSSAVS--PGETP-YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIP-NFDAFAVSSKDGQI  135 (437)
T ss_dssp             TTTTSCEEEEEEE--CSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             cCCCCceEEEEEC--CCCCC-EEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeC-CCCEEEEEeCCCEE
Confidence            6789999999998  8 888 999999999999999876   43221 222 5999999999999 88999999999999


Q ss_pred             EEEEcC---CCceEEEeec-------cCC--CCCceeEEE--EecCCCceEEeeecCCcEEEEeccccccccccceeecC
Q 022590           79 RLWNVQ---TGICILIFAG-------AGG--HRNEVLSVD--FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD  144 (294)
Q Consensus        79 ~vwd~~---~~~~~~~~~~-------~~~--~~~~v~~l~--~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  144 (294)
                      ++||+.   +++....+..       ...  +...+.++.  ++| ++.+|++++.||.|++||+++             
T Consensus       136 ~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-------------  201 (437)
T 3gre_A          136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSLLVALTNLSRVIIFDIRT-------------  201 (437)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEEEEEEETTSEEEEEETTT-------------
T ss_pred             EEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC-------------
Confidence            999995   5554443321       001  556677777  456 788999999999999999998             


Q ss_pred             CCCCCCCceeeeceEEeec--CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee-cCCCCeeE
Q 022590          145 LPSKFPTKYVQFPVFIASV--HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP-VPECDIWF  219 (294)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~i~~  219 (294)
                                ...+..+..  |...|.+++|+  +++|++++.||.|++||+++++         .+..+. .+...|.+
T Consensus       202 ----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~v~~  262 (437)
T 3gre_A          202 ----------LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV---------LIRSWSFGDHAPITH  262 (437)
T ss_dssp             ----------CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE---------EEEEEBCTTCEEEEE
T ss_pred             ----------CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc---------EEEEEecCCCCceEE
Confidence                      344556666  88999999996  8899999999999999998654         455554 56678999


Q ss_pred             EEEccc--CCcceEEEEcCCCeEEEEeccCCCceeeeec----------------------cccccCCCeEEEEEccCCC
Q 022590          220 IKFSCD--FHYNAAAIGNREGKIFVWELQSSPPVLIARL----------------------SHAQSKSPIRQTAMSYDGS  275 (294)
Q Consensus       220 ~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------------------~~~~~~~~v~~~~~s~~~~  275 (294)
                      ++++|.  ..+.+|++|+.||.|++||+++++.......                      ....|...|++++|+ +++
T Consensus       263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence            977764  2236899999999999999998764332221                      001266789999999 779


Q ss_pred             EEEEeccCCcEEEEecCC
Q 022590          276 TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       276 ~l~s~~~dg~i~vw~~~~  293 (294)
                      +|++|+.||.|++||+++
T Consensus       342 ~l~s~~~d~~i~~wd~~~  359 (437)
T 3gre_A          342 ILLTDEATSSIVMFSLNE  359 (437)
T ss_dssp             EEEEEGGGTEEEEEETTC
T ss_pred             EEEecCCCCeEEEEECCC
Confidence            999999999999999864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-38  Score=250.04  Aligned_cols=249  Identities=16%  Similarity=0.267  Sum_probs=198.7

Q ss_pred             cccccCceeEEEEEeecCC---CceEEEEeecCCeEEEEEcCC-cccc-ceecccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590            3 YVDQKEESFYTVSWACNVD---GIPFLVAGGINGIIRVIDVSN-EKLH-KSFVGHGDSINEIRTQPLKPSLVVSASKDES   77 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~   77 (294)
                      .++.|.+.|++++|+  |+   |+ +|++|+.||.|++||+.+ ++.+ ..+.+|...|++++|+| ++++|++++.||.
T Consensus        34 ~~~~h~~~v~~~~~~--~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~  109 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFS--PPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-DGSKVFTASCDKT  109 (368)
T ss_dssp             CSSCCSSCEEEEEEC--CTTSSSE-EEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred             eccCCCCceEEEEEc--CCCCCce-EEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-CCCEEEEEcCCCc
Confidence            456899999999998  77   56 999999999999999987 5444 77889999999999999 8899999999999


Q ss_pred             EEEEEcCCCceEEEeeccCCCCCceeEEEE--ecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           78 VRLWNVQTGICILIFAGAGGHRNEVLSVDF--HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      |++||+.+++.+....    |...|.+++|  +| ++.+|++++.||.|++||+++.                       
T Consensus       110 v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-----------------------  161 (368)
T 3mmy_A          110 AKMWDLSSNQAIQIAQ----HDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSS-----------------------  161 (368)
T ss_dssp             EEEEETTTTEEEEEEE----CSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCS-----------------------
T ss_pred             EEEEEcCCCCceeecc----ccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCC-----------------------
Confidence            9999999998777544    9999999999  77 8889999999999999999973                       


Q ss_pred             eceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCC--cceEEE
Q 022590          156 FPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH--YNAAAI  233 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~~  233 (294)
                      .+...+..+ ..+.++.+.++.+++++.++.+++||++....       ...............+.+.++..  ...+++
T Consensus       162 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (368)
T 3mmy_A          162 NPMMVLQLP-ERCYCADVIYPMAVVATAERGLIVYQLENQPS-------EFRRIESPLKHQHRCVAIFKDKQNKPTGFAL  233 (368)
T ss_dssp             SCSEEEECS-SCEEEEEEETTEEEEEEGGGCEEEEECSSSCE-------EEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred             cEEEEEecC-CCceEEEecCCeeEEEeCCCcEEEEEeccccc-------hhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence            233444444 36777777788999999999999999986532       11111122334556666666552  234999


Q ss_pred             EcCCCeEEEEeccCCCc-eeeeeccccccC------------CCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          234 GNREGKIFVWELQSSPP-VLIARLSHAQSK------------SPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~------------~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++.||.|++||++.... .....+.  .|.            .+|++++|+|++++|++|+.||.|++||+++
T Consensus       234 ~~~dg~i~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~  304 (368)
T 3mmy_A          234 GSIEGRVAIHYINPPNPAKDNFTFK--CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA  304 (368)
T ss_dssp             EETTSEEEEEESSCSCHHHHSEEEE--CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             ecCCCcEEEEecCCCCccccceeee--eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence            99999999999988743 2222322  332            2799999999999999999999999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7e-39  Score=256.67  Aligned_cols=239  Identities=25%  Similarity=0.403  Sum_probs=203.5

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|.+.|.+++|    +++ +|++|+.||.|++||+.+++.+..+.+|...|.+++|++   .++++|+.||.|++||+
T Consensus       169 ~~~h~~~v~~l~~----~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~  240 (435)
T 1p22_A          169 LTGHTGSVLCLQY----DER-VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDM  240 (435)
T ss_dssp             ECCCSSCEEEEEC----CSS-EEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEEC
T ss_pred             EcCCCCcEEEEEE----CCC-EEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeC
Confidence            4579999999998    466 999999999999999999999999999999999999976   58999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .+++.........+|...|.+++|   ++.++++|+.||.|++||+++                       ...+..+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~-----------------------~~~~~~~~~  294 (435)
T 1p22_A          241 ASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTST-----------------------CEFVRTLNG  294 (435)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTT-----------------------CCEEEEEEC
T ss_pred             CCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCc-----------------------CcEEEEEcC
Confidence            988766433333379999999999   456899999999999999998                       445667788


Q ss_pred             CCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590          164 HSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       164 ~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~  243 (294)
                      |...|.++.|+++++++++.||.|++||+++++         .+..+..|...+.+++|  ++  .++++|+.||.|++|
T Consensus       295 ~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~~~~--~~--~~l~sg~~dg~i~vw  361 (435)
T 1p22_A          295 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA---------CLRVLEGHEELVRCIRF--DN--KRIVSGAYDGKIKVW  361 (435)
T ss_dssp             CSSCEEEEEEETTEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEEEEC--CS--SEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCC---------EEEEEeCCcCcEEEEEe--cC--CEEEEEeCCCcEEEE
Confidence            999999999999999999999999999999765         67778888999999998  44  589999999999999


Q ss_pred             eccCCCce-------eeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          244 ELQSSPPV-------LIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       244 d~~~~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |+.+.+..       ....+.  .|..+|.+++|  ++++|++|+.||.|++||+.+
T Consensus       362 d~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~  414 (435)
T 1p22_A          362 DLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN  414 (435)
T ss_dssp             EHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred             ECCCCCCccccccchheeecc--CCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence            99765411       233333  78889999999  788999999999999999864

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-38  Score=254.15  Aligned_cols=241  Identities=16%  Similarity=0.251  Sum_probs=198.5

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEc----CCcc------ccceecc----------cCcceEEEEeCCCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV----SNEK------LHKSFVG----------HGDSINEIRTQPLK   65 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~----~~~~------~~~~~~~----------h~~~v~~~~~~~~~   65 (294)
                      .|.++|++++|+  |+|+.+||+|+.||.|++|++    .+++      ....+..          |.+.|++++|+| +
T Consensus        43 ~~~~~v~~~~~s--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~  119 (425)
T 1r5m_A           43 VKLDNIVSSTWN--PLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-D  119 (425)
T ss_dssp             EECSCCSEEEEC--SSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-T
T ss_pred             eccCceEEEEEC--CCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-C
Confidence            466899999998  887658999999999999999    8877      3444443          688999999999 8


Q ss_pred             CceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590           66 PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL  145 (294)
Q Consensus        66 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  145 (294)
                      +++|++++.||.|++|| .+++.+..+.   +|...|.+++|+| ++.+|++++.||.|++||+++..            
T Consensus       120 ~~~l~~~~~dg~i~i~~-~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~------------  182 (425)
T 1r5m_A          120 GNSIVTGVENGELRLWN-KTGALLNVLN---FHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGT------------  182 (425)
T ss_dssp             SSEEEEEETTSCEEEEE-TTSCEEEEEC---CCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTE------------
T ss_pred             CCEEEEEeCCCeEEEEe-CCCCeeeecc---CCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCc------------
Confidence            99999999999999999 5777777777   6999999999999 88899999999999999998733            


Q ss_pred             CCCCCCceeeeceEEeecCCCc---------------eeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeee
Q 022590          146 PSKFPTKYVQFPVFIASVHSNY---------------VDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK  209 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~---------------i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  209 (294)
                                 ....+..+...               +.++.|+ +..+++++.++.|++||+++++         .+..
T Consensus       183 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~---------~~~~  242 (425)
T 1r5m_A          183 -----------VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT---------PTGK  242 (425)
T ss_dssp             -----------EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS---------CSEE
T ss_pred             -----------EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc---------eeee
Confidence                       22233333333               8888887 7789999999999999998764         4556


Q ss_pred             eecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEE
Q 022590          210 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW  289 (294)
Q Consensus       210 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw  289 (294)
                      +..+...+.+++|+|++  .+|++++.||.|++||+++.+...  .+.  .|...|.+++|+|++ +|++++.||.|++|
T Consensus       243 ~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~--~~~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~  315 (425)
T 1r5m_A          243 LIGHHGPISVLEFNDTN--KLLLSASDDGTLRIWHGGNGNSQN--CFY--GHSQSIVSASWVGDD-KVISCSMDGSVRLW  315 (425)
T ss_dssp             ECCCSSCEEEEEEETTT--TEEEEEETTSCEEEECSSSBSCSE--EEC--CCSSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred             eccCCCceEEEEECCCC--CEEEEEcCCCEEEEEECCCCccce--Eec--CCCccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence            66788899999999998  589999999999999999876433  333  677899999999999 99999999999999


Q ss_pred             ecCC
Q 022590          290 DAIP  293 (294)
Q Consensus       290 ~~~~  293 (294)
                      |+++
T Consensus       316 d~~~  319 (425)
T 1r5m_A          316 SLKQ  319 (425)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            9864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.7e-38  Score=240.60  Aligned_cols=246  Identities=20%  Similarity=0.341  Sum_probs=201.1

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      ..|...|++++|+  |+|+ +|++|+.||+|++|++.+++.+..+.+|...+.++.+.+   .++++++.++.+++|+..
T Consensus        64 ~~~~~~V~~v~~~--~~~~-~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~  137 (318)
T 4ggc_A           64 EQPGEYISSVAWI--KEGN-YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVR  137 (318)
T ss_dssp             CSTTCCEEEEEEC--TTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETT
T ss_pred             cCCCCeEEEEEEC--CCCC-EEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecC
Confidence            4788899999998  9998 999999999999999999999999999999998877754   789999999999999998


Q ss_pred             CCce-EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           85 TGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        85 ~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .... +..+.   +|...+..+.+.+ ++.+|++++.||.|++||+++....                   .........
T Consensus       138 ~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~-------------------~~~~~~~~~  194 (318)
T 4ggc_A          138 VAEHHVATLS---GHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGG-------------------WVPLQTFTQ  194 (318)
T ss_dssp             SSSCEEEEEE---CCSSCEEEEEECT-TSSEEEEEETTSCEEEEESSCBTTB-------------------SCCSEEECC
T ss_pred             CCceeEEEEc---CccCceEEEEEcC-CCCEEEEEecCcceeEEECCCCccc-------------------ccceeeecc
Confidence            7644 44455   6999999999999 8899999999999999999874321                   122344556


Q ss_pred             CCCceeeccee---cce--EEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          164 HSNYVDCNRWL---GDF--ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       164 ~~~~i~~~~~~---~~~--l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      +...|.++.+.   ++.  +++++.++.|++||.+...          ......+...+..+.|+|.+...++++|+.|+
T Consensus       195 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~  264 (318)
T 4ggc_A          195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----------CLSAVDAHSQVCSILWSPHYKELISGHGFAQN  264 (318)
T ss_dssp             CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----------EEEEEECSSCEEEEEEETTTTEEEEEECTTTC
T ss_pred             cCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----------ccccccceeeeeeeeecccccceEEEEEcCCC
Confidence            77778888775   333  3567788999999998654          22334456779999999998643344466899


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|++||+++++.  ...+.  +|..+|++++|+|+|++|+||+.||+|+|||+.+
T Consensus       265 ~i~iwd~~~~~~--~~~l~--gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          265 QLVIWKYPTMAK--VAELK--GHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             CEEEEETTTCCE--EEEEC--CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEEEECCCCcE--EEEEc--CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            999999998874  44444  7889999999999999999999999999999864

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.8e-38  Score=283.84  Aligned_cols=253  Identities=20%  Similarity=0.315  Sum_probs=216.9

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|.+.|++++|+  |+|+ ++++|+.||.|++||+.+++.+..+.+|...|++++|+| ++++|++++.||+|++||+
T Consensus       611 ~~~h~~~v~~~~~s--~~~~-~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~  686 (1249)
T 3sfz_A          611 VRPHTDAVYHACFS--QDGQ-RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDS  686 (1249)
T ss_dssp             ECCCSSCEEEEEEC--TTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred             EecccccEEEEEEC--CCCC-EEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEEC
Confidence            34799999999998  9998 999999999999999999999999999999999999999 8899999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecC-CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      .+++.+..+.   +|...|.+++|+|. +..++++|+.|+.|++||+++                       ......+.
T Consensus       687 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-----------------------~~~~~~~~  740 (1249)
T 3sfz_A          687 ATGKLVHTYD---EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-----------------------KECRNTMF  740 (1249)
T ss_dssp             TTCCEEEEEE---CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-----------------------SSEEEEEC
T ss_pred             CCCceEEEEc---CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-----------------------cchhheec
Confidence            9999999988   69999999999984 345789999999999999998                       44566778


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC---------------------------------------
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE---------------------------------------  201 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~---------------------------------------  201 (294)
                      +|...|.+++|+  ++++++++.||.|++||+++++.....                                       
T Consensus       741 ~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~  820 (1249)
T 3sfz_A          741 GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK  820 (1249)
T ss_dssp             CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTE
T ss_pred             CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCc
Confidence            899999999997  789999999999999999765321000                                       


Q ss_pred             ------CCceeeeee-ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590          202 ------GTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       202 ------~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (294)
                            ......... ..+...+.+++|+|++  .++++++.+|.|++||+.++.  ....+.  +|...|.+++|+|++
T Consensus       821 v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~l~~~~~dg~v~vwd~~~~~--~~~~~~--~h~~~v~~v~~spdg  894 (1249)
T 3sfz_A          821 VLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD--HLAVIALSQYCVELWNIDSRL--KVADCR--GHLSWVHGVMFSPDG  894 (1249)
T ss_dssp             EEEEETTTCCEEEEEECSSSSCCCEEEECSST--TEEEEECSSSCEEEEETTTTE--EEEEEC--CCSSCEEEEEECTTS
T ss_pred             EEEEEecCCCceeEEcCCCCCceEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCc--eeeecC--CCccceEEEEECCCC
Confidence                  000111112 2567789999999998  689999999999999999875  333343  788999999999999


Q ss_pred             CEEEEeccCCcEEEEecC
Q 022590          275 STILSCCEDGAIWRWDAI  292 (294)
Q Consensus       275 ~~l~s~~~dg~i~vw~~~  292 (294)
                      ++|++++.||.|++|++.
T Consensus       895 ~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          895 SSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             SEEEEEETTSCEEEEEHH
T ss_pred             CEEEEEeCCCeEEEEEcc
Confidence            999999999999999964

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-38  Score=242.81  Aligned_cols=236  Identities=17%  Similarity=0.221  Sum_probs=201.8

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .+..|.+.|++++|   |+++ +|++|+.||.|++||+.+++....+..|...|.+++|+| ++.+|++++.||.|++|+
T Consensus        13 ~l~~h~~~v~~~~~---~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A           13 TLKGHDQDVRDVVA---VDDS-KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EECCCSSCEEEEEE---EETT-EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEE
T ss_pred             HhhCCCCCcEEEEe---cCCC-EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEE
Confidence            35689999999999   5677 899999999999999999998999999999999999999 899999999999999999


Q ss_pred             cCCC---ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           83 VQTG---ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        83 ~~~~---~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      +...   +.+..+.   +|...|.+++|.   +.++++++.||.|++||..                         ....
T Consensus        88 ~~~~~~~~~~~~~~---~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d~~-------------------------~~~~  136 (313)
T 3odt_A           88 LFATSGEDPLYTLI---GHQGNVCSLSFQ---DGVVISGSWDKTAKVWKEG-------------------------SLVY  136 (313)
T ss_dssp             TTCCTTSCC-CEEC---CCSSCEEEEEEE---TTEEEEEETTSEEEEEETT-------------------------EEEE
T ss_pred             eeecCCCCcccchh---hcccCEEEEEec---CCEEEEEeCCCCEEEEcCC-------------------------cEEE
Confidence            8765   4445555   799999999994   4589999999999999922                         3456


Q ss_pred             EeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-CCCCeeEEEEcccCCcceEEEEc
Q 022590          160 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                      .+..|...+.++.|.   ++++++++.|+.|++||...           ....+.. +...+.+++|+|++  . +++++
T Consensus       137 ~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-----------~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~  202 (313)
T 3odt_A          137 NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-----------VIKTFSGIHNDVVRHLAVVDDG--H-FISCS  202 (313)
T ss_dssp             EEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-----------EEEEECSSCSSCEEEEEEEETT--E-EEEEE
T ss_pred             ecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-----------eEEEEeccCcccEEEEEEcCCC--e-EEEcc
Confidence            677899999999884   78999999999999999432           3445555 78889999999998  3 89999


Q ss_pred             CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          236 REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       236 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .||.|++||+++.+..  ..+.  .|..+|++++|+|++ .|++++.||.|++||+++
T Consensus       203 ~dg~i~i~d~~~~~~~--~~~~--~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~  255 (313)
T 3odt_A          203 NDGLIKLVDMHTGDVL--RTYE--GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN  255 (313)
T ss_dssp             TTSEEEEEETTTCCEE--EEEE--CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT
T ss_pred             CCCeEEEEECCchhhh--hhhh--cCCceEEEEEEecCC-CEEEEecCCEEEEEECCC
Confidence            9999999999988643  3333  677899999999999 689999999999999865

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.8e-38  Score=251.80  Aligned_cols=240  Identities=18%  Similarity=0.302  Sum_probs=196.0

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-   86 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-   86 (294)
                      ..++++  |+...++++++.||.|+||++.+.    +....+.+|.+.|++++|+|.++++|++|+.||+|++||+.++ 
T Consensus        38 ~~~~~~--~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           38 GFCAVN--PKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             CSEEEC--SSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CcEEEC--CCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            345554  776545556899999999998654    3455678999999999999977889999999999999999987 


Q ss_pred             ------ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           87 ------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        87 ------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                            +.+..+.   +|...|.+++|+|++..+|++++.||.|++||+++                       ......
T Consensus       116 ~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-----------------------~~~~~~  169 (402)
T 2aq5_A          116 LVLPLREPVITLE---GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT-----------------------GAAVLT  169 (402)
T ss_dssp             CSSCBCSCSEEEE---CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT-----------------------TEEEEE
T ss_pred             CccccCCceEEec---CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC-----------------------CCccEE
Confidence                  5566676   79999999999994347999999999999999997                       334555


Q ss_pred             e--ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee-ecCCCC-eeEEEEcccCCcceEEEE
Q 022590          161 A--SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECD-IWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       161 ~--~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~~l~~~  234 (294)
                      +  ..|...|.+++|+  +++|++++.|+.|++||+++++         .+..+ ..+... +..+.|+|++  .++++|
T Consensus       170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~l~~g  238 (402)
T 2aq5_A          170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT---------VVAEKDRPHEGTRPVHAVFVSEG--KILTTG  238 (402)
T ss_dssp             ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---------EEEEEECSSCSSSCCEEEECSTT--EEEEEE
T ss_pred             EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc---------eeeeeccCCCCCcceEEEEcCCC--cEEEEe
Confidence            5  6799999999997  8899999999999999998764         45555 455554 8899999998  688888


Q ss_pred             ---cCCCeEEEEeccCCCc-eeeeeccccccCCCeEEEEEccCCCEEE-EeccCCcEEEEecCC
Q 022590          235 ---NREGKIFVWELQSSPP-VLIARLSHAQSKSPIRQTAMSYDGSTIL-SCCEDGAIWRWDAIP  293 (294)
Q Consensus       235 ---~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~dg~i~vw~~~~  293 (294)
                         +.|+.|++||+++.+. ......   .+...+.+++|+|++++|+ +|+.||.|++||+.+
T Consensus       239 ~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~  299 (402)
T 2aq5_A          239 FSRMSERQVALWDTKHLEEPLSLQEL---DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS  299 (402)
T ss_dssp             ECTTCCEEEEEEETTBCSSCSEEEEC---CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred             ccCCCCceEEEEcCccccCCceEEec---cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence               7999999999988754 222222   4557799999999999996 566899999999875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=8.7e-38  Score=250.31  Aligned_cols=234  Identities=21%  Similarity=0.381  Sum_probs=203.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      +|...|+++++    +++ ++++|+.||.|++||+.+++....+.+|...|.+++|   ++++|++|+.||+|++||+.+
T Consensus       131 ~~~~~v~~~~~----d~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          131 ETSKGVYCLQY----DDQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             SSCCCEEEEEC----CSS-EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSS
T ss_pred             CCCCcEEEEEE----CCC-EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCC
Confidence            56677888876    577 9999999999999999999999999999999999999   457999999999999999999


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ++.+..+.   +|...|.+++|++   .++++|+.||.|++||++....                    ........+|.
T Consensus       203 ~~~~~~~~---~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~--------------------~~~~~~~~~~~  256 (435)
T 1p22_A          203 GEMLNTLI---HHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTD--------------------ITLRRVLVGHR  256 (435)
T ss_dssp             CCEEEEEC---CCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSC--------------------CEEEEEECCCS
T ss_pred             CcEEEEEc---CCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCC--------------------ceeeeEecCCC
Confidence            99988887   6999999999975   4899999999999999987321                    11235667899


Q ss_pred             CceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          166 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       166 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      ..|.++.|+++++++++.||.|++||+++++         .+..+..+...+.++.+.  +  .++++|+.||.|++||+
T Consensus       257 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~~~~~~~v~~~~~~--~--~~l~~g~~dg~i~iwd~  323 (435)
T 1p22_A          257 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCE---------FVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDI  323 (435)
T ss_dssp             SCEEEEEEETTEEEEEETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEEE--T--TEEEEEETTSCEEEEET
T ss_pred             CcEEEEEeCCCEEEEEeCCCeEEEEECCcCc---------EEEEEcCCCCcEEEEEeC--C--CEEEEEeCCCeEEEEEC
Confidence            9999999999999999999999999998765         677788888999999884  3  58999999999999999


Q ss_pred             cCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          246 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++++.  ...+.  .|...|.+++|  ++++|++|+.||.|++||++
T Consensus       324 ~~~~~--~~~~~--~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~  364 (435)
T 1p22_A          324 ECGAC--LRVLE--GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLV  364 (435)
T ss_dssp             TTCCE--EEEEC--CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHH
T ss_pred             CCCCE--EEEEe--CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECC
Confidence            98863  33444  67889999999  78899999999999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-37  Score=236.24  Aligned_cols=237  Identities=16%  Similarity=0.253  Sum_probs=201.8

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      +..|...|.+++|+  |+++ +|++++.||.|++|++.+.   +....+.+|...|.+++|.   +++|++++.||.|++
T Consensus        55 ~~~~~~~v~~~~~~--~~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~  128 (313)
T 3odt_A           55 VYTGQGFLNSVCYD--SEKE-LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKV  128 (313)
T ss_dssp             EEECSSCEEEEEEE--TTTT-EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEE
T ss_pred             eecCCccEEEEEEC--CCCC-EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEE
Confidence            34788999999998  8998 9999999999999998654   5677888999999999994   468999999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ||  .++....+.   .|...+.+++|.|.++.++++++.||.|++||...                         ....
T Consensus       129 ~d--~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------------------~~~~  178 (313)
T 3odt_A          129 WK--EGSLVYNLQ---AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK-------------------------VIKT  178 (313)
T ss_dssp             EE--TTEEEEEEE---CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------------------EEEE
T ss_pred             Ec--CCcEEEecc---cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------------------eEEE
Confidence            99  667777777   69999999999987788999999999999999543                         2334


Q ss_pred             eec-CCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          161 ASV-HSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       161 ~~~-~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      +.. |...+.++.|+ ...+++++.|+.|++||+++++         .+..+..+...+.+++|+|++   .+++++.||
T Consensus       179 ~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~i~~~~~~~~~---~l~~~~~dg  246 (313)
T 3odt_A          179 FSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGD---------VLRTYEGHESFVYCIKLLPNG---DIVSCGEDR  246 (313)
T ss_dssp             ECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCC---------EEEEEECCSSCEEEEEECTTS---CEEEEETTS
T ss_pred             EeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchh---------hhhhhhcCCceEEEEEEecCC---CEEEEecCC
Confidence            444 88999999997 4459999999999999998765         677788899999999999998   488999999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|++||+++++...  .+.  .|..+|.+++|+|+++ +++++.||.|++||+++
T Consensus       247 ~v~iwd~~~~~~~~--~~~--~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          247 TVRIWSKENGSLKQ--VIT--LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             EEEEECTTTCCEEE--EEE--CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred             EEEEEECCCCceeE--EEe--ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence            99999999987433  333  5667899999999998 66788999999999874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.7e-38  Score=241.17  Aligned_cols=209  Identities=21%  Similarity=0.275  Sum_probs=178.6

Q ss_pred             cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-----ceEEEeeccCCCCCceeEEEEecCCCceEEee
Q 022590           44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-----ICILIFAGAGGHRNEVLSVDFHPSDIYRIASC  118 (294)
Q Consensus        44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~  118 (294)
                      .+..++.+|.++|++++|+|.++++|++|+.|++|++|++...     ..+..+.   +|...|.+++|+| ++.+|++|
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~---~h~~~v~~~~~s~-dg~~l~s~   83 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK---GHSHIVQDCTLTA-DGAYALSA   83 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE---CCSSCEEEEEECT-TSSEEEEE
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe---CCcccEEEEEECC-CCCEEEEE
Confidence            3456788999999999999955689999999999999998643     3345555   7999999999999 89999999


Q ss_pred             ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCC
Q 022590          119 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE  196 (294)
Q Consensus       119 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~  196 (294)
                      +.|++|++||+++                       ......+.+|...|.+++|+  +.++++++.|+.|++||++.. 
T Consensus        84 s~D~~v~~wd~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-  139 (319)
T 3frx_A           84 SWDKTLRLWDVAT-----------------------GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-  139 (319)
T ss_dssp             ETTSEEEEEETTT-----------------------TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-
T ss_pred             eCCCEEEEEECCC-----------------------CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-
Confidence            9999999999998                       44566788999999999997  789999999999999999642 


Q ss_pred             CCCCCCCceeeeeeecCCCCeeEEEEcccCC----cceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590          197 QSPGEGTADILQKYPVPECDIWFIKFSCDFH----YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY  272 (294)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~  272 (294)
                               .+..+..|...+..+.+.|...    ...+++++.|+.|++||+++.+  ....+.  +|..+|.+++|+|
T Consensus       140 ---------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~--~h~~~v~~~~~sp  206 (319)
T 3frx_A          140 ---------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI--GHNSNINTLTASP  206 (319)
T ss_dssp             ---------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEEC--CCCSCEEEEEECT
T ss_pred             ---------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeec--CCCCcEEEEEEcC
Confidence                     4667778889999999998642    2489999999999999998865  333333  7889999999999


Q ss_pred             CCCEEEEeccCCcEEEEecCC
Q 022590          273 DGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       273 ~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++++|++|+.||.|++||+++
T Consensus       207 ~g~~l~s~~~dg~i~iwd~~~  227 (319)
T 3frx_A          207 DGTLIASAGKDGEIMLWNLAA  227 (319)
T ss_dssp             TSSEEEEEETTCEEEEEETTT
T ss_pred             CCCEEEEEeCCCeEEEEECCC
Confidence            999999999999999999864

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-37  Score=245.94  Aligned_cols=241  Identities=14%  Similarity=0.162  Sum_probs=201.2

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc-cCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      .|...++..++++++  . .+++++.||.|++||+.+++....+.. |...|++++|+| ++.+|++|+.||.|++||+.
T Consensus        89 ~~~~~~~~~~~~~s~--~-~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--L-NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             TCCCCTTCBCEEECT--T-SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred             CCcCCceEEEEeecC--C-CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECc
Confidence            444444443444334  3 477888999999999999988777765 889999999999 88999999999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      +++.+..+.   +|...|.+++|++   .+|++++.||.|++||++..                      ......+..|
T Consensus       165 ~~~~~~~~~---~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~----------------------~~~~~~~~~~  216 (401)
T 4aez_A          165 SQTKLRTMA---GHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIA----------------------NHQIGTLQGH  216 (401)
T ss_dssp             TCCEEEEEC---CCSSCEEEEEEET---TEEEEEETTSEEEEEETTSS----------------------SCEEEEEECC
T ss_pred             CCeEEEEec---CCCCceEEEEECC---CEEEEEcCCCCEEEEecccC----------------------cceeeEEcCC
Confidence            999988887   6999999999954   68999999999999999852                      2345667889


Q ss_pred             CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc--CCCeE
Q 022590          165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN--REGKI  240 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg~i  240 (294)
                      ...|.++.|+  +++|++++.|+.|++||+++++         ....+..+...+.+++|+|++. .++++++  .|+.|
T Consensus       217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~---------~~~~~~~~~~~v~~~~~~p~~~-~ll~~~~gs~d~~i  286 (401)
T 4aez_A          217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI---------PKFTKTNHNAAVKAVAWCPWQS-NLLATGGGTMDKQI  286 (401)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS---------EEEEECCCSSCCCEEEECTTST-TEEEEECCTTTCEE
T ss_pred             CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC---------ccEEecCCcceEEEEEECCCCC-CEEEEecCCCCCEE
Confidence            9999999997  7899999999999999998754         5666777889999999999886 5777765  79999


Q ss_pred             EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEE--eccCCcEEEEecCC
Q 022590          241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILS--CCEDGAIWRWDAIP  293 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~vw~~~~  293 (294)
                      ++||+.+++....  +   .+...|.+++|+|++++|++  |+.||.|++||+.+
T Consensus       287 ~i~d~~~~~~~~~--~---~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          287 HFWNAATGARVNT--V---DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             EEEETTTCCEEEE--E---ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred             EEEECCCCCEEEE--E---eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence            9999998864333  3   23467999999999999999  55899999999864

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.8e-37  Score=249.50  Aligned_cols=241  Identities=16%  Similarity=0.280  Sum_probs=204.0

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCC-CCCceEEEeeCCCcEEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP-LKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~vwd   82 (294)
                      +..|.+.|++++|+  |++  ++++|+.||+|++||+.+++.+..+.+|...|.+++|++ .++.++++|+.||+|++||
T Consensus       158 ~~~h~~~V~~l~~~--~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd  233 (464)
T 3v7d_B          158 LSGHDGGVWALKYA--HGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  233 (464)
T ss_dssp             ECCCSSCEEEEEEC--STT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred             EeCCCcCEEEEEEc--CCC--EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence            45799999999997  666  799999999999999999999999999999999999984 2678999999999999999


Q ss_pred             cCCCceEEE--------------------eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceee
Q 022590           83 VQTGICILI--------------------FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW  142 (294)
Q Consensus        83 ~~~~~~~~~--------------------~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~  142 (294)
                      +.++.....                    .....+|...+.++.  + ++.++++++.||.|++||+++           
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~l~~~~~d~~i~vwd~~~-----------  299 (464)
T 3v7d_B          234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVWDVAQ-----------  299 (464)
T ss_dssp             CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E-ETTEEEEEETTSCEEEEETTT-----------
T ss_pred             CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C-CCCEEEEEeCCCeEEEEECCC-----------
Confidence            987753321                    112226888888874  5 678899999999999999987           


Q ss_pred             cCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE
Q 022590          143 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI  220 (294)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  220 (294)
                                  ...+..+..|...|.++.|+  ++++++++.||.|++||+++++         .+..+..|...+.++
T Consensus       300 ------------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~---------~~~~~~~h~~~v~~~  358 (464)
T 3v7d_B          300 ------------MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE---------LMYTLQGHTALVGLL  358 (464)
T ss_dssp             ------------TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEE
T ss_pred             ------------CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---------EEEEEeCCCCcEEEE
Confidence                        44566778899999999997  7799999999999999998764         677888899999999


Q ss_pred             EEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          221 KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       221 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|++    .++++++.||.|++||+++.+....  .   .+...+..++|+|++++|++|+ ||.|++||+++
T Consensus       359 ~~~~----~~l~s~s~dg~v~vwd~~~~~~~~~--~---~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          359 RLSD----KFLVSAAADGSIRGWDANDYSRKFS--Y---HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             EECS----SEEEEEETTSEEEEEETTTCCEEEE--E---ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTT
T ss_pred             EEcC----CEEEEEeCCCcEEEEECCCCceeee--e---cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCC
Confidence            9973    4899999999999999998763322  2   3446788899999999999998 89999999875

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-37  Score=236.04  Aligned_cols=215  Identities=18%  Similarity=0.226  Sum_probs=175.7

Q ss_pred             ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC--ceEEEeeccCCCCCceeEEEEecC-CCceEEeeecCCc
Q 022590           47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG--ICILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNT  123 (294)
Q Consensus        47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~  123 (294)
                      ..+.+|.+.|++++|+| ++++|++|+.|++|++||+..+  +.+..+.   +|.++|.+++|+|. ++.+|++|+.|++
T Consensus         3 ~~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~---gH~~~V~~v~~s~~~~g~~l~s~s~D~~   78 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAHPKFGTILASCSYDGK   78 (297)
T ss_dssp             EECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEEC---CCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred             eeccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEc---cccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence            45678999999999999 8999999999999999999743  5566666   79999999999862 3789999999999


Q ss_pred             EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee----cceEEEeeCCCeEEEecCCCCCCCC
Q 022590          124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSP  199 (294)
Q Consensus       124 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~  199 (294)
                      |++||++...                     ......+..|...|.+++|+    +.+|++++.|+.|++||++..... 
T Consensus        79 v~iWd~~~~~---------------------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-  136 (297)
T 2pm7_B           79 VMIWKEENGR---------------------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-  136 (297)
T ss_dssp             EEEEEBSSSC---------------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-
T ss_pred             EEEEEcCCCc---------------------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-
Confidence            9999998631                     12344567799999999996    568999999999999999865321 


Q ss_pred             CCCCceeeeeeecCCCCeeEEEEcccCC-----------cceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEE
Q 022590          200 GEGTADILQKYPVPECDIWFIKFSCDFH-----------YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQT  268 (294)
Q Consensus       200 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~  268 (294)
                            ....+..|...+.+++|+|+..           ..+|++|+.|+.|++||+++.+..........+|...|.++
T Consensus       137 ------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v  210 (297)
T 2pm7_B          137 ------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV  210 (297)
T ss_dssp             ------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred             ------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEE
Confidence                  1245667888999999999731           25899999999999999988753322222234888999999


Q ss_pred             EEccCC---CEEEEeccCCcEEEEecCC
Q 022590          269 AMSYDG---STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       269 ~~s~~~---~~l~s~~~dg~i~vw~~~~  293 (294)
                      +|+|++   ++|++++.|+.|++||+++
T Consensus       211 ~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          211 AWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             EECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            999985   8999999999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.2e-37  Score=246.17  Aligned_cols=265  Identities=16%  Similarity=0.280  Sum_probs=191.3

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .+..|.+.|.+++|+    ++ ++++|+.||.|++||+.+++.+..+.+|...|.+++|++   +.+++|+.||+|++||
T Consensus       154 ~~~~h~~~v~~~~~~----~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd  225 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMR----DN-IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWD  225 (445)
T ss_dssp             ECCCCSSCEEEEEEE----TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEE
T ss_pred             EEcCCCCCEEEEEec----CC-EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEE
Confidence            345677777888877    33 677777788888888777777777777777777777754   5677777777777887


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc--------eeecCC-------CC
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS--------FTWTDL-------PS  147 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--------~~~~~~-------~~  147 (294)
                      +.+++.+..+.   +|...|.+++|   ++.++++|+.||.|++||+++........        +.+.+.       ..
T Consensus       226 ~~~~~~~~~~~---~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~  299 (445)
T 2ovr_B          226 IETGQCLHVLM---GHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT  299 (445)
T ss_dssp             SSSCCEEEEEE---CCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTS
T ss_pred             CCCCcEEEEEc---CCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCC
Confidence            77777777777   57777777777   34567777777777777776643221110        011000       00


Q ss_pred             CC--CCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec---CCCCeeEEEE
Q 022590          148 KF--PTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV---PECDIWFIKF  222 (294)
Q Consensus       148 ~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~  222 (294)
                      ..  -..........+..|...+.++.++++++++++.||.|++||+++++         .+..+..   +...+.+++|
T Consensus       300 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~v~~~~~  370 (445)
T 2ovr_B          300 SIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQ---------CLQTLQGPNKHQSAVTCLQF  370 (445)
T ss_dssp             CEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCC---------EEEEECSTTSCSSCEEEEEE
T ss_pred             eEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCc---------EEEEEccCCCCCCCEEEEEE
Confidence            00  00000233556677888899999999999999999999999998664         4555554   6788999998


Q ss_pred             cccCCcceEEEEcCCCeEEEEeccCCCceeeee-ccccccCCCeEEEEEccCCCEEEEeccCCc----EEEEecCCC
Q 022590          223 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIAR-LSHAQSKSPIRQTAMSYDGSTILSCCEDGA----IWRWDAIPT  294 (294)
Q Consensus       223 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~----i~vw~~~~~  294 (294)
                      +  +  .++++|+.||.|++||+.+++...... .....+.+.|.+++|+|++.+|++|+.||.    |.+||++.+
T Consensus       371 ~--~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          371 N--K--NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             C--S--SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             C--C--CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            5  3  589999999999999999987543332 223467789999999999999999999998    999999753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=9.2e-39  Score=252.34  Aligned_cols=261  Identities=17%  Similarity=0.135  Sum_probs=177.3

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccc-----cceecccCcceEEEEeCC-------CCCceEEEeeCCCcEEEEEcCCCc
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKL-----HKSFVGHGDSINEIRTQP-------LKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~h~~~v~~~~~~~-------~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      +++. +|++++.|++|+|||..+++.     +..+.+|.+.|++++|+|       .++++||+|+.|++|+|||+.++.
T Consensus        99 ~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A           99 VYSL-FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             EEEE-EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred             CCCC-EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence            3444 899999999999999988754     345789999999999986       257899999999999999998887


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce---eeeceEEeecC
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY---VQFPVFIASVH  164 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  164 (294)
                      .+..+.   +|..+|.+++|+|.+..+|++++.|++|++||+++................. ....   .........+|
T Consensus       178 ~~~~~~---~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~  253 (393)
T 4gq1_A          178 PILAGY---PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW-LLTLNTLPLVNTCHSSGI  253 (393)
T ss_dssp             EEEEEE---ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC-SEEEESGGGC------CC
T ss_pred             eeeeec---CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce-EEecccccceeeeecccc
Confidence            777666   5999999999999555789999999999999998754332221111000000 0000   00112234578


Q ss_pred             CCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCC----------CceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590          165 SNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEG----------TADILQKYPVPECDIWFIKFSCDFHYNAA  231 (294)
Q Consensus       165 ~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  231 (294)
                      ...+.++.|.   +..+++++.|+.+++||+..........          ............. .....+.|.....++
T Consensus       254 ~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  332 (393)
T 4gq1_A          254 ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPS-LLGACPHPRYMDYFA  332 (393)
T ss_dssp             SSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCC-SSCCEECSSCTTEEE
T ss_pred             cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCc-ceeEEEccCCCCEEE
Confidence            8889999885   7899999999999999998764321110          0001111111122 223445554444678


Q ss_pred             EEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          232 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ++|+.||.|++||+.+++.....  .  .|..+|++++|+|||++||+++.+| +.+|.+
T Consensus       333 ~sgs~Dg~V~lwd~~~~~~~~~~--~--~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          333 TAHSQHGLIQLINTYEKDSNSIP--I--QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EEETTTTEEEEEETTCTTCCEEE--E--ECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEECCCCEEEEEECCCCcEEEEe--c--CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            88999999999999988643322  2  5667999999999999999998877 555554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.8e-36  Score=243.45  Aligned_cols=256  Identities=18%  Similarity=0.334  Sum_probs=206.8

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~   86 (294)
                      ....+.++++.    |+ +|++|+.||.|++||+.+++.+..+.+|...|.+++|++   +++++|+.||+|++||+.++
T Consensus       118 ~~~v~~~~~~~----g~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~~  189 (445)
T 2ovr_B          118 DDHVITCLQFC----GN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAETG  189 (445)
T ss_dssp             TTSCEEEEEEE----TT-EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTTT
T ss_pred             CCCcEEEEEEc----CC-EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCcC
Confidence            45668899999    56 899999999999999999999999999999999999999   48999999999999999999


Q ss_pred             ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccc--------ceeecCCCC----CCC----
Q 022590           87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK--------SFTWTDLPS----KFP----  150 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--------~~~~~~~~~----~~~----  150 (294)
                      +.+..+.   +|...|.++.|++   ..+++|+.||.|++||+++.......        .+.+.+...    ...    
T Consensus       190 ~~~~~~~---~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          190 ECIHTLY---GHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV  263 (445)
T ss_dssp             EEEEEEC---CCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEE
T ss_pred             cEEEEEC---CCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEE
Confidence            9999999   6999999999964   56999999999999999875432211        111100000    000    


Q ss_pred             -CceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          151 -TKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       151 -~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                       ..........+..|...|.++.|++.++++++.|+.|++||+++++         .+..+..+...+.++.+.  +  .
T Consensus       264 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~v~~~~~~--~--~  330 (445)
T 2ovr_B          264 WDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN---------CIHTLTGHQSLTSGMELK--D--N  330 (445)
T ss_dssp             EEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC---------EEEEECCCCSCEEEEEEE--T--T
T ss_pred             EECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCC---------EEEEEcCCcccEEEEEEe--C--C
Confidence             0001233556678999999999999999999999999999998765         566777788888877764  4  4


Q ss_pred             eEEEEcCCCeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          230 AAAIGNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++++|+.||.|++||+++++..  ..+. ...|..+|.+++|+  +++|++|+.||.|++||+++
T Consensus       331 ~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~  391 (445)
T 2ovr_B          331 ILVSGNADSTVKIWDIKTGQCL--QTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT  391 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEE--EEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEE--EEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC
Confidence            8999999999999999988643  3333 23477899999996  57999999999999999875

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.1e-37  Score=245.21  Aligned_cols=227  Identities=16%  Similarity=0.245  Sum_probs=187.5

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCC
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  112 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  112 (294)
                      ..+..|+..+....+++.+|.++|++++|+| ++++|++|+.||+|++||+.+++....+.   .|...|.+++|+| ++
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~---~h~~~v~~~~~s~-~g  120 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIK---LHCPWVMECAFAP-NG  120 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEE---CCCTTCCCCEECT-TS
T ss_pred             ccccccccceeEEeecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEe---cCCCCEEEEEECC-CC
Confidence            3455677777778889999999999999999 88999999999999999999999988888   6999999999999 89


Q ss_pred             ceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEE
Q 022590          113 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVL  189 (294)
Q Consensus       113 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~i  189 (294)
                      .+|++|+.|+.+++||+.......                ........+.+|...+.++.|.   +..|++++.|+.|++
T Consensus       121 ~~las~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~  184 (380)
T 3iz6_a          121 QSVACGGLDSACSIFNLSSQADRD----------------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVL  184 (380)
T ss_dssp             SEEEECCSSSCCEEEECCCCSSCC----------------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEE
T ss_pred             CEEEEeeCCCcEEEEECCCCcccc----------------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEE
Confidence            999999999999999997621100                0011234567899999999996   457999999999999


Q ss_pred             ecCCCCCCCCCCCCceeeeee-----ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCC
Q 022590          190 WEPKMKEQSPGEGTADILQKY-----PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP  264 (294)
Q Consensus       190 wd~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  264 (294)
                      ||+++++         .+..+     ..|...+.++.|++... .++++|+.||.|++||++.... ....+.  +|...
T Consensus       185 wd~~~~~---------~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sgs~D~~v~~wd~~~~~~-~~~~~~--~h~~~  251 (380)
T 3iz6_a          185 WDVTTGQ---------RISIFGSEFPSGHTADVLSLSINSLNA-NMFISGSCDTTVRLWDLRITSR-AVRTYH--GHEGD  251 (380)
T ss_dssp             ECTTTCC---------EEEEECCCSSSSCCSCEEEEEECSSSC-CEEEEEETTSCEEEEETTTTCC-CCEEEC--CCSSC
T ss_pred             EEcCCCc---------EEEEeecccCCCCccCeEEEEeecCCC-CEEEEEECCCeEEEEECCCCCc-ceEEEC--CcCCC
Confidence            9999775         23333     45778899999987432 6999999999999999985422 223333  78899


Q ss_pred             eEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          265 IRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       265 v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |++++|+|++++|++|+.||.|++||+++
T Consensus       252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~  280 (380)
T 3iz6_a          252 INSVKFFPDGQRFGTGSDDGTCRLFDMRT  280 (380)
T ss_dssp             CCEEEECTTSSEEEEECSSSCEEEEETTT
T ss_pred             eEEEEEecCCCeEEEEcCCCeEEEEECCC
Confidence            99999999999999999999999999874

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-37  Score=249.05  Aligned_cols=244  Identities=11%  Similarity=0.097  Sum_probs=192.6

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcC---Cccccceecc------------cCcceEEEE--eCCCCCce
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVS---NEKLHKSFVG------------HGDSINEIR--TQPLKPSL   68 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~---~~~~~~~~~~------------h~~~v~~~~--~~~~~~~~   68 (294)
                      .|..+|++++|+  |+++ +|++|+.||.|++||+.   +++....+..            +...+.++.  +++ ++.+
T Consensus       109 ~h~~~v~~~~~~--~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~  184 (437)
T 3gre_A          109 DCSSTVTQITMI--PNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE-EKSL  184 (437)
T ss_dssp             ECSSCEEEEEEC--TTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS-SCEE
T ss_pred             cCCCCEEEEEEe--CCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC-CCCE
Confidence            689999999998  8888 99999999999999995   5554443332            344556665  456 7889


Q ss_pred             EEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590           69 VVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        69 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                      |++|+.||.|++||+++++.+..+... .|...|++++|+| ++.+|++|+.||.|++||++.                 
T Consensus       185 l~~~~~d~~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~-----------------  245 (437)
T 3gre_A          185 LVALTNLSRVIIFDIRTLERLQIIENS-PRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRF-----------------  245 (437)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECC-GGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTT-----------------
T ss_pred             EEEEeCCCeEEEEeCCCCeeeEEEccC-CCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCC-----------------
Confidence            999999999999999999999888721 1789999999999 899999999999999999997                 


Q ss_pred             CCCceeeeceEEee-cCCCceeeccee------cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee----------
Q 022590          149 FPTKYVQFPVFIAS-VHSNYVDCNRWL------GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP----------  211 (294)
Q Consensus       149 ~~~~~~~~~~~~~~-~~~~~i~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----------  211 (294)
                            ..++..+. .|...|.++.|+      +.+|++++.|+.|++||+++++.         +..+.          
T Consensus       246 ------~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~~~~~~~  310 (437)
T 3gre_A          246 ------NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC---------QYAFINSDEQPSMEH  310 (437)
T ss_dssp             ------TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE---------EEEEESSSSCCCGGG
T ss_pred             ------ccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE---------EEEEEcCCCCCccce
Confidence                  33344443 677789999443      55999999999999999987652         22221          


Q ss_pred             --------------c--CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc------------------
Q 022590          212 --------------V--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS------------------  257 (294)
Q Consensus       212 --------------~--~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------  257 (294)
                                    .  +...|.+++|+ ++  .+|++|+.||.|++||+.+++......-.                  
T Consensus       311 ~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (437)
T 3gre_A          311 FLPIEKGLEELNFCGIRSLNALSTISVS-ND--KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTM  387 (437)
T ss_dssp             GSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT--EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEE
T ss_pred             ecccccccccceecccccCCceEEEEEC-Cc--eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEE
Confidence                          1  45668889999 55  58999999999999999887643322210                  


Q ss_pred             ---------------ccccCCCeEEEEEccC--CCEEEEeccCCcEEEEe
Q 022590          258 ---------------HAQSKSPIRQTAMSYD--GSTILSCCEDGAIWRWD  290 (294)
Q Consensus       258 ---------------~~~~~~~v~~~~~s~~--~~~l~s~~~dg~i~vw~  290 (294)
                                     ...|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       388 ~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          388 LLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                           1127889999999998  78999999999999995

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.4e-37  Score=248.97  Aligned_cols=214  Identities=14%  Similarity=0.164  Sum_probs=172.0

Q ss_pred             cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEE
Q 022590           46 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK  125 (294)
Q Consensus        46 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~  125 (294)
                      ......|...|++|+|+|.++++||+|+.||+|+|||+.+++....+. ..+|.+.|++|+|+|.++.+|++|+.||+|+
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~-~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK-GIGAGGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC-CCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE-ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            344567889999999999778899999999999999998776544332 2279999999999997788999999999999


Q ss_pred             EEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCC
Q 022590          126 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT  203 (294)
Q Consensus       126 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  203 (294)
                      +||++...                     .........+...+.+++|+  +.+|++|+.||.|++||++..        
T Consensus       191 iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--------  241 (435)
T 4e54_B          191 LQDFKGNI---------------------LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--------  241 (435)
T ss_dssp             EEETTSCE---------------------EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--------
T ss_pred             EeeccCCc---------------------eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--------
Confidence            99998621                     11111222344567788886  789999999999999998643        


Q ss_pred             ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590          204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED  283 (294)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  283 (294)
                        .+..+..|...|.+++|+|++. .++++|+.|+.|++||+++.+..... ....+|..+|++++|+|+|++|++++.|
T Consensus       242 --~~~~~~~h~~~v~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~spdg~~l~s~~~D  317 (435)
T 4e54_B          242 --ELWNLRMHKKKVTHVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASF-LYSLPHRHPVNAACFSPDGARLLTTDQK  317 (435)
T ss_dssp             --BCCCSBCCSSCEEEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCC-SBCCBCSSCEEECCBCTTSSEEEEEESS
T ss_pred             --eeEEEecccceEEeeeecCCCc-eEEEEecCcceeeEEecccccccceE-EEeeeccccccceeECCCCCeeEEEcCC
Confidence              3445667888999999999986 58889999999999999887533222 1233788999999999999999999999


Q ss_pred             CcEEEEecCC
Q 022590          284 GAIWRWDAIP  293 (294)
Q Consensus       284 g~i~vw~~~~  293 (294)
                      |.|++||+++
T Consensus       318 ~~i~iwd~~~  327 (435)
T 4e54_B          318 SEIRVYSASQ  327 (435)
T ss_dssp             SCEEEEESSS
T ss_pred             CEEEEEECCC
Confidence            9999999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.4e-36  Score=253.44  Aligned_cols=243  Identities=13%  Similarity=0.121  Sum_probs=207.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cccceecccCcc-eEEEEeCCC-CCceEEEeeCCCcEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDS-INEIRTQPL-KPSLVVSASKDESVR   79 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~h~~~-v~~~~~~~~-~~~~l~s~~~dg~i~   79 (294)
                      .|.+.|.+++|+  |+|+ +|++++ ++.|++|++.++    +....+.+|... |++++|+|. ++++|++|+.||+|+
T Consensus        16 ~~~~~v~~~~~s--pdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~   91 (615)
T 1pgu_A           16 TQRNFTTHLSYD--PTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI   91 (615)
T ss_dssp             CCTTCCCCCEEE--TTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred             CccCceeEEEEC--CCCC-EEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEE
Confidence            688999999998  9999 888888 889999999998    888999999999 999999993 567999999999999


Q ss_pred             EEEcCCC--------ceEEEeeccCCCCCceeEEEEecCCCceEEeeecC----CcEEEEeccccccccccceeecCCCC
Q 022590           80 LWNVQTG--------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD----NTVKIWSMKEFWTYVEKSFTWTDLPS  147 (294)
Q Consensus        80 vwd~~~~--------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~  147 (294)
                      +||+.++        +....+.   .|..+|.+++|+| ++.+|++++.+    +.|++||...                
T Consensus        92 vw~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~-~~~~l~~~~~~~~~~~~v~~~d~~~----------------  151 (615)
T 1pgu_A           92 VWGWTFDKESNSVEVNVKSEFQ---VLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGN----------------  151 (615)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEE---CCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCC----------------
T ss_pred             EEeCCCCcccccccccccchhh---cccccEEEEEEeC-CCCEEEEeccCCCCccEEEEEECCC----------------
Confidence            9999755        5555666   6999999999999 88889999887    6899998432                


Q ss_pred             CCCCceeeeceEEeecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC---CeeEEE
Q 022590          148 KFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC---DIWFIK  221 (294)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~  221 (294)
                               ....+..|...|.++.|+  ++ .+++++.|+.|++||+++.+         .+..+..+..   .+.+++
T Consensus       152 ---------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~---------~~~~~~~~~~~~~~v~~~~  213 (615)
T 1pgu_A          152 ---------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK---------FSASDRTHHKQGSFVRDVE  213 (615)
T ss_dssp             ---------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE---------EEEEECSSSCTTCCEEEEE
T ss_pred             ---------cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc---------eeeeecccCCCCceEEEEE
Confidence                     355677899999999998  43 89999999999999988654         5677777888   899999


Q ss_pred             Eccc-CCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          222 FSCD-FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       222 ~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |+|+ +  .++++++.||.|++||+++++...........|..+|.+++|+ ++++|++++.||.|++||+++
T Consensus       214 ~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~  283 (615)
T 1pgu_A          214 FSPDSG--EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT  283 (615)
T ss_dssp             ECSTTC--CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT
T ss_pred             ECCCCC--CEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC
Confidence            9999 7  6899999999999999998864332211111567899999999 999999999999999999874

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-36  Score=270.86  Aligned_cols=270  Identities=18%  Similarity=0.280  Sum_probs=213.5

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC-CCceEEEeeCCCcEEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL-KPSLVVSASKDESVRLWN   82 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd   82 (294)
                      +..|.+.|.+++|+  |+|+ +|++++.||.|++||+.+++.+..+.+|...|.+++|+|. +..++++|+.||.|++||
T Consensus       653 ~~~h~~~v~~~~~s--~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd  729 (1249)
T 3sfz_A          653 IKAHEDEVLCCAFS--SDDS-YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD  729 (1249)
T ss_dssp             ECCCSSCEEEEEEC--TTSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEE
T ss_pred             eccCCCCEEEEEEe--cCCC-EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEE
Confidence            45799999999998  8998 9999999999999999999999999999999999999994 345889999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceee--------------------
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW--------------------  142 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--------------------  142 (294)
                      +.+++.+..+.   +|...|.+++|+| ++.+|++++.||.|++||++............                    
T Consensus       730 ~~~~~~~~~~~---~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  805 (1249)
T 3sfz_A          730 LNQKECRNTMF---GHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS  805 (1249)
T ss_dssp             TTSSSEEEEEC---CCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC
T ss_pred             CCCcchhheec---CCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEE
Confidence            99999988887   7999999999999 88999999999999999998754322211100                    


Q ss_pred             -cCCCCCCC-----------CceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeee
Q 022590          143 -TDLPSKFP-----------TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ  208 (294)
Q Consensus       143 -~~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  208 (294)
                       .+......           .............|...|.++.|+  +.++++++.|+.|++||+.++.         .+.
T Consensus       806 ~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~---------~~~  876 (1249)
T 3sfz_A          806 WSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL---------KVA  876 (1249)
T ss_dssp             BCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE---------EEE
T ss_pred             ECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc---------eee
Confidence             00000000           000001112233788899999997  8899999999999999998654         567


Q ss_pred             eeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC---------------------------------------
Q 022590          209 KYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP---------------------------------------  249 (294)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------------------------------------  249 (294)
                      .+..|...|.+++|+|++  .++++++.||.|++|++.+..                                       
T Consensus       877 ~~~~h~~~v~~v~~spdg--~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  954 (1249)
T 3sfz_A          877 DCRGHLSWVHGVMFSPDG--SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG  954 (1249)
T ss_dssp             EECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC
T ss_pred             ecCCCccceEEEEECCCC--CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcc
Confidence            777888889999999988  578888888888888864210                                       


Q ss_pred             --------------------------------------ceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          250 --------------------------------------PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       250 --------------------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                                                            ......  ...|...|++++|+|++++|++++.||.|++||+
T Consensus       955 ~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~ 1032 (1249)
T 3sfz_A          955 QIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS--GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032 (1249)
T ss_dssp             CEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEE--CCCCSSCCCCEEECSSSSCEEEECSSSBEEEEET
T ss_pred             eEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeee--cccCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence                                                  000111  2257789999999999999999999999999998


Q ss_pred             CC
Q 022590          292 IP  293 (294)
Q Consensus       292 ~~  293 (294)
                      .+
T Consensus      1033 ~~ 1034 (1249)
T 3sfz_A         1033 QT 1034 (1249)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2e-36  Score=243.41  Aligned_cols=246  Identities=13%  Similarity=0.212  Sum_probs=186.2

Q ss_pred             ceeEEEEEeecCCC--ceEEEEeecCCeEEEEEcCCcccc---------------------------------------c
Q 022590            9 ESFYTVSWACNVDG--IPFLVAGGINGIIRVIDVSNEKLH---------------------------------------K   47 (294)
Q Consensus         9 ~~v~~~~~~~~~~~--~~~l~~~~~dg~i~iw~~~~~~~~---------------------------------------~   47 (294)
                      +.|++++|+  |++  . +|++++.||.|++||+.+++..                                       .
T Consensus        94 ~~V~~l~~~--~~~~~~-~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (447)
T 3dw8_B           94 EKINKIRWL--PQKNAA-QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR  170 (447)
T ss_dssp             CCCCEEEEC--CCCSSS-EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred             CceEEEEEc--CCCCcc-eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence            889999998  766  5 8999999999999998764431                                       1


Q ss_pred             e-ecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-ceEEEee----ccCCCCCceeEEEEecCCC-ceEEeeec
Q 022590           48 S-FVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFA----GAGGHRNEVLSVDFHPSDI-YRIASCGM  120 (294)
Q Consensus        48 ~-~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~----~~~~~~~~v~~l~~~~~~~-~~l~~~~~  120 (294)
                      . ..+|...|++++|+| ++++|++| .|++|++||+.+. +.+..+.    ...+|...|.+++|+| ++ .+|++|+.
T Consensus       171 ~~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~~l~s~~~  247 (447)
T 3dw8_B          171 IFANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP-NSCNTFVYSSS  247 (447)
T ss_dssp             EECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS-SCTTEEEEEET
T ss_pred             EeccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC-CCCcEEEEEeC
Confidence            2 367999999999999 88999998 7999999999843 3443220    1236999999999999 65 89999999


Q ss_pred             CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC------------Cceeeccee--cceEEEeeCCCe
Q 022590          121 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS------------NYVDCNRWL--GDFILSKSVDNE  186 (294)
Q Consensus       121 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~i~~~~~~--~~~l~~~~~d~~  186 (294)
                      ||.|++||++......                   .....+..|.            ..|.+++|+  +.+|++++. +.
T Consensus       248 dg~i~iwd~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~  307 (447)
T 3dw8_B          248 KGTIRLCDMRASALCD-------------------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS  307 (447)
T ss_dssp             TSCEEEEETTTCSSSC-------------------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE
T ss_pred             CCeEEEEECcCCcccc-------------------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce
Confidence            9999999999843211                   0123334444            489999997  789999988 99


Q ss_pred             EEEecCCC-CCCCCCCCCceeeeeeecCCC---------------CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc
Q 022590          187 IVLWEPKM-KEQSPGEGTADILQKYPVPEC---------------DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  250 (294)
Q Consensus       187 i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~---------------~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  250 (294)
                      |++||++. ++         .+..+..|..               .+..++|+|++  .+|++|+.||.|++||+.+++.
T Consensus       308 v~iwd~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~--~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          308 VKVWDLNMENR---------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD--SVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             EEEEETTCCSS---------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS--SEEEEECSTTEEEEEETTTCCE
T ss_pred             EEEEeCCCCcc---------ccceeeccccccccccccccccccccceEEEECCCC--CEEEEeccCCEEEEEEcCCCcc
Confidence            99999986 33         2333444432               13348999998  5899999999999999998764


Q ss_pred             eeeeecc----------------------------ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          251 VLIARLS----------------------------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       251 ~~~~~~~----------------------------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .......                            .......|..++|+|++++||+++.++ +++|.-+
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          377 ITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             EEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             eeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence            3211100                            112345789999999999999998886 8888754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4e-36  Score=233.17  Aligned_cols=214  Identities=21%  Similarity=0.239  Sum_probs=177.7

Q ss_pred             CCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc-----eEEEeeccCCCCCceeEEEEecCCCceE
Q 022590           41 SNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-----CILIFAGAGGHRNEVLSVDFHPSDIYRI  115 (294)
Q Consensus        41 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~~l  115 (294)
                      ++.++..++++|.+.|++|+|+|+++++|+||+.|++|++||+.+.+     +...+.   +|...|.+++|+| ++.+|
T Consensus        26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~---~h~~~V~~~~~s~-dg~~l  101 (340)
T 4aow_A           26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR---GHSHFVSDVVISS-DGQFA  101 (340)
T ss_dssp             CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC---CCSSCEEEEEECT-TSSEE
T ss_pred             CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe---CCCCCEEEEEECC-CCCEE
Confidence            33455668999999999999999557899999999999999997654     233444   7999999999999 89999


Q ss_pred             EeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCC
Q 022590          116 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPK  193 (294)
Q Consensus       116 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~  193 (294)
                      ++++.|+.|++|+...                       .........+...+....+.  +++|++++.|+.+++||+.
T Consensus       102 ~s~~~d~~i~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~  158 (340)
T 4aow_A          102 LSGSWDGTLRLWDLTT-----------------------GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL  158 (340)
T ss_dssp             EEEETTSEEEEEETTT-----------------------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             EEEcccccceEEeecc-----------------------cceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeC
Confidence            9999999999999987                       33344555566666666665  7899999999999999987


Q ss_pred             CCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590          194 MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD  273 (294)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (294)
                      ...        ........+...+..++|++++...++++++.|+.|++||+++.+.  ...+.  +|..+|++++|+|+
T Consensus       159 ~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~--~~~~~--~h~~~v~~~~~s~~  226 (340)
T 4aow_A          159 GVC--------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNHI--GHTGYLNTVTVSPD  226 (340)
T ss_dssp             SCE--------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE--EEEEC--CCSSCEEEEEECTT
T ss_pred             CCc--------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCce--eeEec--CCCCcEEEEEECCC
Confidence            543        2344455677889999999998777899999999999999998753  33333  78899999999999


Q ss_pred             CCEEEEeccCCcEEEEecCC
Q 022590          274 GSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       274 ~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +++|++|+.||.|++||+++
T Consensus       227 ~~~l~s~s~Dg~i~iwd~~~  246 (340)
T 4aow_A          227 GSLCASGGKDGQAMLWDLNE  246 (340)
T ss_dssp             SSEEEEEETTCEEEEEETTT
T ss_pred             CCEEEEEeCCCeEEEEEecc
Confidence            99999999999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-36  Score=258.52  Aligned_cols=251  Identities=10%  Similarity=0.096  Sum_probs=196.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .|.+.|++++|+  |+++ +||+|+.||.|+||+..+.+....+. |..+|++++|+|  +++|++++.|++|++||+.+
T Consensus        15 gh~~~V~~lafs--pdg~-~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           15 GMSSKPIAAAFD--FTQN-LLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             ECSSCEEEEEEE--TTTT-EEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET--TTEEEEEETTCEEEEEETTT
T ss_pred             CCCCCcEEEEEC--CCCC-EEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC--CCEEEEEECcCeEEEEECCC
Confidence            789999999998  9998 99999999999999988776655544 788999999999  45999999999999999999


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ++.+..+.    |...|++++|+| ++.+|++|+.||.|++||++.....   .+....         .........+|.
T Consensus        89 ~~~~~~~~----~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~---~~~i~~---------~~~~~~~~~~h~  151 (902)
T 2oaj_A           89 QKVLTTVF----VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLS---SFKLDN---------LQKSSFFPAARL  151 (902)
T ss_dssp             CSEEEEEE----CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEE---EEEECC---------HHHHHTCSSSCC
T ss_pred             CcEEEEEc----CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccc---cceecc---------ccccccccccCC
Confidence            99988886    778999999999 8899999999999999999874321   000000         000002236788


Q ss_pred             Cceeecceec---ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC------------------CCCeeEEEEcc
Q 022590          166 NYVDCNRWLG---DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP------------------ECDIWFIKFSC  224 (294)
Q Consensus       166 ~~i~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~------------------~~~i~~~~~~~  224 (294)
                      ..|.+++|++   ..+++++.|+.| +||+++++         .+..+..+                  ...|.+++|+|
T Consensus       152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE---------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             CCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE---------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             CCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc---------eEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence            9999999983   589999999999 99998764         33333332                  46799999999


Q ss_pred             cCCcceEEEEcCCCeEEEEeccCCCceeeeecc----cc----------ccCCCeEEEEEc----cCC-CEEEEeccC--
Q 022590          225 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLS----HA----------QSKSPIRQTAMS----YDG-STILSCCED--  283 (294)
Q Consensus       225 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~----------~~~~~v~~~~~s----~~~-~~l~s~~~d--  283 (294)
                      ++  .+|++++.||.|++||+++++......+.    +.          .+..+|.+++|+    |++ .+|++|+.|  
T Consensus       222 dg--~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~  299 (902)
T 2oaj_A          222 NS--LHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISR  299 (902)
T ss_dssp             TS--SEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred             CC--CEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence            98  69999999999999999988754432221    10          134579999996    443 567777666  


Q ss_pred             ---CcEEEEec
Q 022590          284 ---GAIWRWDA  291 (294)
Q Consensus       284 ---g~i~vw~~  291 (294)
                         +.+.+|++
T Consensus       300 ~~~~~v~~~~~  310 (902)
T 2oaj_A          300 GDNQSLTMIDL  310 (902)
T ss_dssp             SSCCCEEEEEE
T ss_pred             CCCceEEEEec
Confidence               37888884

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.8e-36  Score=258.48  Aligned_cols=245  Identities=21%  Similarity=0.312  Sum_probs=207.1

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      +..|..+|.+++|+  |+++ +|++|+.||.|++||+.+++.+..+.+|.+.|++++|+| ++.+|++++.||+|++||+
T Consensus        51 ~~~~~~~v~~~~~s--~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           51 IQVTETPVRAGKFI--ARKN-WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             EECCSSCEEEEEEE--GGGT-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEG
T ss_pred             EecCCCcEEEEEEe--CCCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEEC
Confidence            45799999999998  8898 999999999999999999999999999999999999999 8899999999999999999


Q ss_pred             CCC-ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           84 QTG-ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        84 ~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      .++ .....+.   +|...|.+++|+|.++..|++++.||.|++||++..                       .+.....
T Consensus       127 ~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~-----------------------~~~~~~~  180 (814)
T 3mkq_A          127 ENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-----------------------TPNFTLT  180 (814)
T ss_dssp             GGTSEEEEEEE---CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS-----------------------SCSEEEE
T ss_pred             CCCceEEEEEc---CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------------cceeEEe
Confidence            887 5556666   699999999999966789999999999999999862                       2233333


Q ss_pred             -cCCCceeeccee----cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          163 -VHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       163 -~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                       .+...+.+++|+    +.++++++.||.|++||+++++         .+..+..|...+.+++|+|++  .++++++.|
T Consensus       181 ~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~---------~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d  249 (814)
T 3mkq_A          181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS---------CVATLEGHMSNVSFAVFHPTL--PIIISGSED  249 (814)
T ss_dssp             CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSS--SEEEEEETT
T ss_pred             cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc---------EEEEEcCCCCCEEEEEEcCCC--CEEEEEeCC
Confidence             344788888884    6799999999999999998654         577778888999999999999  589999999


Q ss_pred             CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCE-EEEeccCCcEEEEecCC
Q 022590          238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGST-ILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~dg~i~vw~~~~  293 (294)
                      |.|++||+.+.+.  ...+.  .+...+.+++|+|+++. +++++.|+.+.+|++..
T Consensus       250 g~v~vwd~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (814)
T 3mkq_A          250 GTLKIWNSSTYKV--EKTLN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (814)
T ss_dssp             SCEEEEETTTCSE--EEEEC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred             CeEEEEECCCCcE--EEEee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence            9999999998763  33333  55678999999999873 24444566788888753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.9e-35  Score=234.60  Aligned_cols=238  Identities=17%  Similarity=0.230  Sum_probs=197.3

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      .+.|+|+  ++ + +||+|. |++|+|||..+++..+.+.  +|...|++|+|+| ++++|++|+.||+|++||+.+++.
T Consensus       108 ~~~l~wS--~~-n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          108 LNLVDWS--SG-N-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             CBCEEEC--TT-S-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE
T ss_pred             ceeEEEC--CC-C-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcE
Confidence            5678997  54 3 777775 8999999999998877654  6778899999999 899999999999999999999999


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      +..+.   +|...+.++.++   +.+|++|+.|+.+++||.+..                      ...+..+..|...+
T Consensus       182 ~~~~~---~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~----------------------~~~~~~~~~h~~~~  233 (420)
T 4gga_A          182 LRNMT---SHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVA----------------------EHHVATLSGHSQEV  233 (420)
T ss_dssp             EEEEC---CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSS----------------------SCEEEEEECCSSCE
T ss_pred             EEEEe---CCCCceEEEeeC---CCEEEEEeCCCceeEeeeccc----------------------ceeeEEecccccce
Confidence            98887   799999999885   468999999999999998873                      23456678899999


Q ss_pred             eeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE--EcCCCeEEEEe
Q 022590          169 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--GNREGKIFVWE  244 (294)
Q Consensus       169 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~--~~~dg~i~i~d  244 (294)
                      ..+.+.  +.++++++.|+.+++||...++.     ....+.....+...|.+++|+|.+. .++++  |+.|+.|++||
T Consensus       234 ~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~-----~~~~~~~~~~~~~~V~~~~~~p~~~-~~la~~~gs~D~~I~iwd  307 (420)
T 4gga_A          234 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEG-----GWVPLQTFTQHQGAVKAVAWCPWQS-NVLATGGGTSDRHIRIWN  307 (420)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEESSCCSS-----CSCCSEEECCCSSCEEEEEECTTCT-TEEEEEECTTTCEEEEEE
T ss_pred             eeeeecCCCCeeeeeeccccceEEeeccccc-----cceeeeeecccCCceeeeeeCCCcc-cEEEEEeecCCCEEEEEe
Confidence            999997  88999999999999999987754     2234556677888999999999886 45554  56899999999


Q ss_pred             ccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec--cCCcEEEEecCC
Q 022590          245 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC--EDGAIWRWDAIP  293 (294)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--~dg~i~vw~~~~  293 (294)
                      +.+++...  .+.   +...+.++.|+|+++.+++++  .||.|+|||+.+
T Consensus       308 ~~t~~~~~--~~~---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~  353 (420)
T 4gga_A          308 VCSGACLS--AVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  353 (420)
T ss_dssp             TTTTEEEE--EEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             CCccccce--eec---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence            99986433  332   235799999999999888754  799999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.3e-36  Score=256.45  Aligned_cols=277  Identities=9%  Similarity=0.109  Sum_probs=193.8

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc------------------CcceEEEEeCCCC
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH------------------GDSINEIRTQPLK   65 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h------------------~~~v~~~~~~~~~   65 (294)
                      ++.|.++|.+++|+  |++..++++|+.||.| +||+.+++.++.+..|                  ...|++++|+| +
T Consensus       147 ~~~h~~~V~sl~~s--p~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-d  222 (902)
T 2oaj_A          147 PAARLSPIVSIQWN--PRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-N  222 (902)
T ss_dssp             SSSCCCCCCEEEEE--TTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-T
T ss_pred             cccCCCCeEEEEEc--cCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-C
Confidence            35788999999998  7643389999999999 9999999888777655                  57899999999 8


Q ss_pred             CceEEEeeCCCcEEEEEcCCCceEEE--eeccCC-------------CCCceeEEEEecC---C-CceEEeeecC-----
Q 022590           66 PSLVVSASKDESVRLWNVQTGICILI--FAGAGG-------------HRNEVLSVDFHPS---D-IYRIASCGMD-----  121 (294)
Q Consensus        66 ~~~l~s~~~dg~i~vwd~~~~~~~~~--~~~~~~-------------~~~~v~~l~~~~~---~-~~~l~~~~~d-----  121 (294)
                      +.+|++|+.||+|++||+++++.+..  +.....             |..+|++++|++.   + +.+|++|+.|     
T Consensus       223 g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~  302 (902)
T 2oaj_A          223 SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDN  302 (902)
T ss_dssp             SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSC
T ss_pred             CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCC
Confidence            99999999999999999999887653  211111             3568999999652   2 3567777665     


Q ss_pred             CcEEEEecccc--------------------ccccc-----c--cee-----------------------------ecCC
Q 022590          122 NTVKIWSMKEF--------------------WTYVE-----K--SFT-----------------------------WTDL  145 (294)
Q Consensus       122 g~i~~wd~~~~--------------------~~~~~-----~--~~~-----------------------------~~~~  145 (294)
                      ..+++|++...                    .....     .  .+.                             +...
T Consensus       303 ~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~  382 (902)
T 2oaj_A          303 QSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYP  382 (902)
T ss_dssp             CCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETT
T ss_pred             ceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECC
Confidence            37888884210                    00000     0  000                             0000


Q ss_pred             CCCC-CC------------cee--------------------eeceEEeecCCCceeeccee--cceEEEeeCCCeEEEe
Q 022590          146 PSKF-PT------------KYV--------------------QFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLW  190 (294)
Q Consensus       146 ~~~~-~~------------~~~--------------------~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iw  190 (294)
                      .... ..            ...                    ......+.+|...+..++|+  +++|++|+.|++|++|
T Consensus       383 ~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlW  462 (902)
T 2oaj_A          383 SGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIY  462 (902)
T ss_dssp             TCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEE
T ss_pred             CCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEE
Confidence            0000 00            000                    00001134455566666665  7899999999999999


Q ss_pred             cCCCCCCCCCCCCceeee-eee-----cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc--------------
Q 022590          191 EPKMKEQSPGEGTADILQ-KYP-----VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--------------  250 (294)
Q Consensus       191 d~~~~~~~~~~~~~~~~~-~~~-----~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--------------  250 (294)
                      |+..+....    ...+. .+.     .|...|.+++|+|++  .+||+|+.||.|++||+.+++.              
T Consensus       463 d~~~g~~~~----~~~~~~~l~~~~~~~h~~~V~svafspdg--~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~  536 (902)
T 2oaj_A          463 DASHGDIQD----NASFEVNLSRTLNKAKELAVDKISFAAET--LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEM  536 (902)
T ss_dssp             ESSCCTTTT----TBCEEEEHHHHTTCSSSCCEEEEEEETTT--TEEEEEETTSCEEEEEEEECCC--------------
T ss_pred             ECCCccccC----CceEEeechhhcCCCCCCceeEEEecCCC--CeEEEEecCcEEEEEEecCccccCccccCCCcccce
Confidence            998874211    01111 111     677889999999999  6999999999999999987631              


Q ss_pred             -----------------------------eeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          251 -----------------------------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       251 -----------------------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                                                   .....+  ..|.++|++++|+|+| +||+|+.|++|++||++.
T Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l--~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~  605 (902)
T 2oaj_A          537 NFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV--HANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG  605 (902)
T ss_dssp             -CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE--CCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred             eeeeccccCCccccccccccCCCCCCCccceeEEE--EcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence                                         012222  3688999999999999 999999999999999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.3e-35  Score=231.30  Aligned_cols=245  Identities=10%  Similarity=0.113  Sum_probs=179.5

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCCcEEEEEc
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNV   83 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~   83 (294)
                      +.|.+.|++++|+  |+|+ +|++|+.+| +++|++.+++......  ...+..+++.+ +++.+ ++++.|++|++||+
T Consensus        16 ~~h~~~V~~v~fs--~dg~-~la~g~~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           16 NHVSNPVTDYEFN--QDQS-CLILSTLKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLH-RTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             ---CCCCCEEEEC--TTSS-EEEEECSSE-EEEEEETTEEEEEEEE--CSCCCEEEECT-TSSEEEEECSSTTEEEEEET
T ss_pred             ccCCCceEEEEEC--CCCC-EEEEEcCCE-EEEEecCCcceeeeee--cCCeEEEEEcC-CCCEEEEEECCccEEEEEEC
Confidence            5799999999998  9998 899988775 7899998876654433  23578888888 55555 67888899999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .+++.+..+.    +...|.+++|++ +  .++++ .|+.|++||+.....                      .+..+..
T Consensus        89 ~~~~~~~~~~----~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~----------------------~~~~~~~  138 (355)
T 3vu4_A           89 VKKQDVSRIK----VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWK----------------------RITDDIR  138 (355)
T ss_dssp             TTTEEEEEEE----CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCC----------------------BSSCCEE
T ss_pred             CCCcEEEEEE----CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCce----------------------eeEEecc
Confidence            9999998887    777999999987 4  24443 478999999987310                      0111111


Q ss_pred             CCCceeecceecceEEE--eeCCCeEEEecCCCCCCCCCCC------Ccee-eeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          164 HSNYVDCNRWLGDFILS--KSVDNEIVLWEPKMKEQSPGEG------TADI-LQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       164 ~~~~i~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~------~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                       ...+  ++++..+++.  |+.+|.|++||++++.......      ...+ +..+..|...|.+++|+|++  .+|++|
T Consensus       139 -~~~~--~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g--~~l~s~  213 (355)
T 3vu4_A          139 -FGGV--CEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS--DMVATC  213 (355)
T ss_dssp             -EEEE--EEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS--SEEEEE
T ss_pred             -CCce--EEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC--CEEEEE
Confidence             1122  2233356665  6889999999998754211100      0112 56778899999999999998  699999


Q ss_pred             cCCCe-EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          235 NREGK-IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       235 ~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +.||. |++||+++++...  .+....|...|.+++|+|++++|++++.|+.|++||++.
T Consensus       214 s~d~~~v~iwd~~~~~~~~--~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          214 SQDGTIIRVFKTEDGVLVR--EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             ETTCSEEEEEETTTCCEEE--EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             eCCCCEEEEEECCCCcEEE--EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence            99998 9999999887443  332113778999999999999999999999999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-35  Score=237.81  Aligned_cols=246  Identities=12%  Similarity=0.062  Sum_probs=196.5

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc---ccceecc---------------------------------
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---LHKSFVG---------------------------------   51 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~---------------------------------   51 (294)
                      ..++.+++|+  |+|+ +|+++ .++.|++||+.+++   .+..+..                                 
T Consensus         4 ~~p~~~v~~s--~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            4 IHPLQNLLTS--RDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             ECCCCEEEEC--SSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             cccEEEEEec--CCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            3578999987  9998 66665 57899999999888   5544442                                 


Q ss_pred             ---------------------cCcceEEEEeCCCCCceE-EEeeCCCcEEEEEcC--CCceEEEeeccCCCCCceeEEEE
Q 022590           52 ---------------------HGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQ--TGICILIFAGAGGHRNEVLSVDF  107 (294)
Q Consensus        52 ---------------------h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~v~~l~~  107 (294)
                                           |.+.|++++|+| ++++| ++|+.||.|++||+.  +++.+..+.. ..|...|.+++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~  157 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-FCFSKRPNAISI  157 (450)
T ss_dssp             --------------------CCCCCEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-EECSSCEEEEEE
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeec-ccCCCCceEEEE
Confidence                                 333799999999 77775 899999999999999  8888777652 137789999999


Q ss_pred             ecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecc-----eEEEee
Q 022590          108 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD-----FILSKS  182 (294)
Q Consensus       108 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~l~~~~  182 (294)
                      +| ++.+|++|+.||.+++|++......                   ..+...+.+|...|.+++|+.+     +|++++
T Consensus       158 sp-~~~~l~~~~~~g~v~~~~~~~~~~~-------------------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  217 (450)
T 2vdu_B          158 AE-DDTTVIIADKFGDVYSIDINSIPEE-------------------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD  217 (450)
T ss_dssp             CT-TSSEEEEEETTSEEEEEETTSCCCS-------------------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE
T ss_pred             cC-CCCEEEEEeCCCcEEEEecCCcccc-------------------cccceeeecccCceEEEEEcCCCCCCcEEEEEc
Confidence            99 8899999999999999999873211                   0022355678999999999743     899999


Q ss_pred             CCCeEEEecCCCCCCCCCCCCceeeee-eecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc---
Q 022590          183 VDNEIVLWEPKMKEQSPGEGTADILQK-YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH---  258 (294)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---  258 (294)
                      .|+.|++||+++++         .+.. ...|...|.+++|+ ++  .+|++++.|+.|++||+++++.........   
T Consensus       218 ~d~~i~vwd~~~~~---------~~~~~~~~h~~~v~~~~~s-d~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~  285 (450)
T 2vdu_B          218 RDEHIKISHYPQCF---------IVDKWLFGHKHFVSSICCG-KD--YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIK  285 (450)
T ss_dssp             TTSCEEEEEESCTT---------CEEEECCCCSSCEEEEEEC-ST--TEEEEEESSSEEEEEETTTCCEEEEEECHHHHG
T ss_pred             CCCcEEEEECCCCc---------eeeeeecCCCCceEEEEEC-CC--CEEEEEeCCCeEEEEECCCCcEeeeecchhhhh
Confidence            99999999998765         3333 45788899999999 77  699999999999999999987544433210   


Q ss_pred             ------------------cccCCCeEEEEEccCCCEEEEec-cCCcEEEEec
Q 022590          259 ------------------AQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDA  291 (294)
Q Consensus       259 ------------------~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~  291 (294)
                                        ......|.+++|+|++++|++++ .|+.|++|++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          286 PYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             GGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             hhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                              02345799999999999999998 8999999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.7e-35  Score=246.98  Aligned_cols=245  Identities=17%  Similarity=0.220  Sum_probs=206.7

Q ss_pred             ccccCce-eEEEEEeecC--CCceEEEEeecCCeEEEEEcCCc--------cccceecccCcceEEEEeCCCCCceEEEe
Q 022590            4 VDQKEES-FYTVSWACNV--DGIPFLVAGGINGIIRVIDVSNE--------KLHKSFVGHGDSINEIRTQPLKPSLVVSA   72 (294)
Q Consensus         4 ~~~h~~~-v~~~~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~   72 (294)
                      +..|.+. |++++|+  |  +++ +|++|+.||.|++||+.++        +....+..|..+|.+++|+| ++++|+++
T Consensus        59 ~~~h~~~~v~~~~~s--p~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~  134 (615)
T 1pgu_A           59 FTGHGSSVVTTVKFS--PIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVV  134 (615)
T ss_dssp             ECTTTTSCEEEEEEC--SSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEE
T ss_pred             EecCCCceEEEEEEC--cCCCCC-EEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC-CCCEEEEe
Confidence            4578999 9999998  8  998 9999999999999999754        67778888999999999999 88999999


Q ss_pred             eCC----CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590           73 SKD----ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        73 ~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                      +.+    +.|.+||  .++.+..+.   +|...|.+++|+|++..++++++.|+.|++||++.                 
T Consensus       135 ~~~~~~~~~v~~~d--~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-----------------  192 (615)
T 1pgu_A          135 GEGRDNFGVFISWD--SGNSLGEVS---GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-----------------  192 (615)
T ss_dssp             ECCSSCSEEEEETT--TCCEEEECC---SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT-----------------
T ss_pred             ccCCCCccEEEEEE--CCCcceeee---cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-----------------
Confidence            987    6888888  566777776   79999999999994334899999999999999887                 


Q ss_pred             CCCceeeeceEEeecCCC---ceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee-e---cCCCCee
Q 022590          149 FPTKYVQFPVFIASVHSN---YVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-P---VPECDIW  218 (294)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~---~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~~i~  218 (294)
                            ......+..|..   .|.+++|+   ++++++++.|+.|++||+++++         .+..+ .   .+...+.
T Consensus       193 ------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~v~  257 (615)
T 1pgu_A          193 ------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE---------FLKYIEDDQEPVQGGIF  257 (615)
T ss_dssp             ------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC---------EEEECCBTTBCCCSCEE
T ss_pred             ------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC---------EeEEecccccccCCceE
Confidence                  445667778888   99999997   5699999999999999998765         45555 4   7888999


Q ss_pred             EEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          219 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       219 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +++|+ ++  .++++++.||.|++||+++.+...........+...+.++.|+ +++++++++.||.|++||+.+
T Consensus       258 ~~~~~-~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          258 ALSWL-DS--QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             EEEES-SS--SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE
T ss_pred             EEEEc-CC--CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC
Confidence            99999 76  6899999999999999998764444333322344678888886 889999999999999999863

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-36  Score=233.13  Aligned_cols=230  Identities=10%  Similarity=0.073  Sum_probs=178.8

Q ss_pred             cCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC---------CCceE
Q 022590           19 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ---------TGICI   89 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~---------~~~~~   89 (294)
                      .+++. ++++|+.||.|++||+.+++.+..+.  ...|.++.|+| .   +++++.|++|++|+..         +++.+
T Consensus        45 ~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~-~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           45 YYDKW-VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHP-A---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SEEEE-EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCC-S---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             cCCCC-EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCC-c---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            35666 99999999999999999999888776  57788999999 4   9999999999999765         44545


Q ss_pred             EEeeccCCCCCceeEEEEecC-CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe-ecCCCc
Q 022590           90 LIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNY  167 (294)
Q Consensus        90 ~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  167 (294)
                      ..+..  +|..+|.+++|+|. ++.++++++.||.|++||+++..                       ..... ..|...
T Consensus       118 ~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-----------------------~~~~~~~~~~~~  172 (343)
T 3lrv_A          118 REIEV--DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-----------------------QYIVHSAKSDVE  172 (343)
T ss_dssp             EEEEC--CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-----------------------EEEEECCCSSCC
T ss_pred             EEeec--CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-----------------------EEEEEecCCCCc
Confidence            44443  57789999999982 45789999999999999999732                       22222 345567


Q ss_pred             eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-CCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      +.+++|+  +.+|++|+.||.|++||+++++.        ....+.. |..+|.+++|+|++  .+|++++ ++.|++||
T Consensus       173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~--------~~~~~~~~h~~~v~~l~fs~~g--~~l~s~~-~~~v~iwd  241 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ--------ASSRFPVDEEAKIKEVKFADNG--YWMVVEC-DQTVVCFD  241 (343)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEESSCTTS--------CCEECCCCTTSCEEEEEECTTS--SEEEEEE-SSBEEEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCCC--------CccEEeccCCCCEEEEEEeCCC--CEEEEEe-CCeEEEEE
Confidence            9999997  78999999999999999998763        1144555 88999999999998  5889888 55999999


Q ss_pred             ccCCCceeeeeccccccCCCe--EEEEEccCCCEEEEecc-CCcEEEEecC
Q 022590          245 LQSSPPVLIARLSHAQSKSPI--RQTAMSYDGSTILSCCE-DGAIWRWDAI  292 (294)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~s~~~-dg~i~vw~~~  292 (294)
                      +++.+....... +..|..++  .+++|+|+|++|++++. |+.|++|+++
T Consensus       242 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~  291 (343)
T 3lrv_A          242 LRKDVGTLAYPT-YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD  291 (343)
T ss_dssp             TTSSTTCBSSCC-CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             cCCCCcceeecc-cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence            998764322111 11233334  46999999999999988 9999999884

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-35  Score=236.01  Aligned_cols=243  Identities=16%  Similarity=0.071  Sum_probs=193.4

Q ss_pred             ccCceeEEEEEeecCCCceE-EEEeecCCeEEEEEcC--Cccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            6 QKEESFYTVSWACNVDGIPF-LVAGGINGIIRVIDVS--NEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~-l~~~~~dg~i~iw~~~--~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      .|.+.|++++|+  |+|+ + +++|+.||.|++||+.  +++.+..+.  .|...|++++|+| ++.+|++|+.||.|++
T Consensus       100 ~~~~~v~~~~~s--~d~~-~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B          100 PIYSYIRNLRLT--SDES-RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYS  175 (450)
T ss_dssp             CCCCCEEEEEEC--TTSS-EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEE
T ss_pred             ccCCceEEEEEc--CCCC-EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEE
Confidence            455689999998  9998 6 4899999999999999  888888876  5678999999999 8899999999999999


Q ss_pred             EEcCCCceEE----EeeccCCCCCceeEEEEecCC---CceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           81 WNVQTGICIL----IFAGAGGHRNEVLSVDFHPSD---IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        81 wd~~~~~~~~----~~~~~~~~~~~v~~l~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      |++.+++...    .+.   +|...|.+++|+| +   +.+|++|+.|+.|++||+++.                     
T Consensus       176 ~~~~~~~~~~~~~~~~~---~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~---------------------  230 (450)
T 2vdu_B          176 IDINSIPEEKFTQEPIL---GHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQC---------------------  230 (450)
T ss_dssp             EETTSCCCSSCCCCCSE---ECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCT---------------------
T ss_pred             EecCCcccccccceeee---cccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCC---------------------
Confidence            9998877554    444   6999999999999 7   889999999999999999873                     


Q ss_pred             eeeceEE-eecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee--------------------
Q 022590          154 VQFPVFI-ASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--------------------  211 (294)
Q Consensus       154 ~~~~~~~-~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--------------------  211 (294)
                        ..+.. ..+|...|.+++|+ +++|++++.|+.|++||+++++.         +..+.                    
T Consensus       231 --~~~~~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  299 (450)
T 2vdu_B          231 --FIVDKWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKN---------LSTFDYNSLIKPYLNDQHLAPPRFQ  299 (450)
T ss_dssp             --TCEEEECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTCCE---------EEEEECHHHHGGGCCTTSBC-----
T ss_pred             --ceeeeeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCCcE---------eeeecchhhhhhhhhhccccccccc
Confidence              22333 55799999999996 88999999999999999997752         22222                    


Q ss_pred             -----cCCCCeeEEEEcccCCcceEEEEc-CCCeEEEEec--cCC-CceeeeeccccccCCCeEEEEEccCCCEEEEecc
Q 022590          212 -----VPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWEL--QSS-PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       212 -----~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                           .....+..++|+|++  .++++++ .++.|++|++  ... +......+.  .+ ..|.+++|+|++.++++++.
T Consensus       300 ~~~~~~~~~~v~~i~~~~~~--~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~--~~-~~v~~~~~~~~~~~v~~~~~  374 (450)
T 2vdu_B          300 NENNDIIEFAVSKIIKSKNL--PFVAFFVEATKCIIILEMSEKQKGDLALKQIIT--FP-YNVISLSAHNDEFQVTLDNK  374 (450)
T ss_dssp             -----CBCCCEEEEEECSSS--SEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE--CS-SCEEEEEEETTEEEEEECCT
T ss_pred             ccccccceEEEEEEEEeCCC--CEEEEEECCCCeEEEEEeccCCCCceeeccEec--cC-CceEEEEecCCcEEEEEecc
Confidence                 223568899999988  5777777 8999999999  443 112333333  44 78999999996544444443


Q ss_pred             ------CCcEEEEecCC
Q 022590          283 ------DGAIWRWDAIP  293 (294)
Q Consensus       283 ------dg~i~vw~~~~  293 (294)
                            +..|.+|.+..
T Consensus       375 ~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          375 ESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             TCCSSCCCSEEEEEEET
T ss_pred             cCCCCCCcceEEEEEEc
Confidence                  55688987653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.2e-36  Score=230.48  Aligned_cols=216  Identities=20%  Similarity=0.265  Sum_probs=171.8

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCC-CceEEEeeCCCcEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLK-PSLVVSASKDESVRL   80 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~i~v   80 (294)
                      ++.|.++|++++|++..+++ +|++|+.|++|++||+.+++  ....+.+|...|++++|+|++ +.+|++|+.|++|++
T Consensus        53 l~gH~~~V~~v~~~~~~~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           53 LRGHEGPVWQVAWAHPMYGN-ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             EECCSSCEEEEEECCGGGSS-CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             EcCCCccEEEEEeCCCCCCC-EEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            56899999999997322477 89999999999999998874  556778899999999999932 789999999999999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCC----------------CceEEeeecCCcEEEEeccccccccccceeecC
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSD----------------IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD  144 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  144 (294)
                      ||+..+..........+|...|.+++|+|..                +.+|++|+.|+.|++||++....          
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~----------  201 (316)
T 3bg1_A          132 LTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ----------  201 (316)
T ss_dssp             EEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC----------
T ss_pred             EecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc----------
Confidence            9998764333233334799999999999831                36899999999999999975210          


Q ss_pred             CCCCCCCceeeeceEEeecCCCceeecceec------ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCee
Q 022590          145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLG------DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW  218 (294)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~  218 (294)
                                ......+.+|...|.+++|++      ++|++++.|++|++||++......     .....+..+...+.
T Consensus       202 ----------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~-----~~~~~~~~~~~~v~  266 (316)
T 3bg1_A          202 ----------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT-----WSPKLLHKFNDVVW  266 (316)
T ss_dssp             ----------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC-----CBCCEEEECSSCEE
T ss_pred             ----------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc-----hhhhhhhcCCCcEE
Confidence                      123456778999999999973      689999999999999997632110     01122345678899


Q ss_pred             EEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          219 FIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       219 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      +++|+|++  .+|++++.||.|++|+...
T Consensus       267 ~v~~sp~g--~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          267 HVSWSITA--NILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             EEEECTTT--CCEEEEESSSCEEEEEECT
T ss_pred             EEEEcCCC--CEEEEEcCCCeEEEEEECC
Confidence            99999998  6899999999999999863

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=232.58  Aligned_cols=216  Identities=19%  Similarity=0.240  Sum_probs=180.0

Q ss_pred             ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC--CCceEEEeeccCCCCCceeEEEEecCC--CceEEee
Q 022590           43 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ--TGICILIFAGAGGHRNEVLSVDFHPSD--IYRIASC  118 (294)
Q Consensus        43 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~l~~~  118 (294)
                      |+++..+.+|.++|++++|+| ++++|++|+.||.|++||+.  +++.+..+.   +|...|++++|+| +  +.+|+++
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~~~l~s~   75 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAH-PKFGTILASC   75 (379)
T ss_dssp             ----CCEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEEC---CCSSCEEEEEECC-GGGCSEEEEE
T ss_pred             CCccEEecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEec---CCCCcEEEEEeCC-CCCCCEEEEe
Confidence            356778899999999999999 88999999999999999997  455566666   7999999999987 5  8999999


Q ss_pred             ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee----cceEEEeeCCCeEEEecCCC
Q 022590          119 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKM  194 (294)
Q Consensus       119 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~  194 (294)
                      +.||.|++||++...                     .........|...|.+++|+    +++|++++.|+.|++||++.
T Consensus        76 ~~dg~v~iwd~~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~  134 (379)
T 3jrp_A           76 SYDGKVLIWKEENGR---------------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE  134 (379)
T ss_dssp             ETTSCEEEEEEETTE---------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred             ccCCEEEEEEcCCCc---------------------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCC
Confidence            999999999998732                     12456677799999999997    56899999999999999987


Q ss_pred             CCCCCCCCCceeeeeeecCCCCeeEEEEccc-------------CCcceEEEEcCCCeEEEEeccCCCceeeeecccccc
Q 022590          195 KEQSPGEGTADILQKYPVPECDIWFIKFSCD-------------FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS  261 (294)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  261 (294)
                      ...       .....+..+...+.+++|+|.             +  .++++++.||.|++||++..+...........|
T Consensus       135 ~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h  205 (379)
T 3jrp_A          135 NGT-------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES--RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  205 (379)
T ss_dssp             TSC-------CCEEEEECCTTCEEEEEECCCC----------CTT--CEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             CCc-------eeeEEecCCCCceEEEEEcCccccccccccCCCCC--CEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence            642       133456678889999999994             5  689999999999999998876543333334478


Q ss_pred             CCCeEEEEEccC---CCEEEEeccCCcEEEEecCC
Q 022590          262 KSPIRQTAMSYD---GSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       262 ~~~v~~~~~s~~---~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ..+|.+++|+|+   +++|++++.||.|++||++.
T Consensus       206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~  240 (379)
T 3jrp_A          206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN  240 (379)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence            899999999999   89999999999999999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=7.7e-34  Score=218.29  Aligned_cols=239  Identities=17%  Similarity=0.230  Sum_probs=195.0

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec--ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      .++|+|+  +++  +||+| .|++|+|||+.+++.++.+.  +|...|++++|+| ++++|++|+.||+|++||+++++.
T Consensus        28 ~~~l~WS--~~~--~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           28 LNLVDWS--SGN--VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             CBCEEEC--TTS--EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceEEEEC--CCC--EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCcee
Confidence            4679997  665  67776 48999999999999887664  6778899999999 899999999999999999999999


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      +..+.   +|...+.++.+.   +.++++++.++.+++|+....                      ......+..|...+
T Consensus       102 ~~~~~---~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~  153 (318)
T 4ggc_A          102 LRNMT---SHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVA----------------------EHHVATLSGHSQEV  153 (318)
T ss_dssp             EEEEE---CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSS----------------------SCEEEEEECCSSCE
T ss_pred             EEEec---CccceEEEeecC---CCEEEEEecCCceEeeecCCC----------------------ceeEEEEcCccCce
Confidence            99888   699888877664   468999999999999998873                      23456678899999


Q ss_pred             eeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc-eEEEEcCCCeEEEEec
Q 022590          169 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN-AAAIGNREGKIFVWEL  245 (294)
Q Consensus       169 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~~~~~dg~i~i~d~  245 (294)
                      ..+.+.  ++++++++.|+.|++||+++++.     ..........+...+..+.++|.+... .+++++.++.|++||.
T Consensus       154 ~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~  228 (318)
T 4ggc_A          154 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEG-----GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV  228 (318)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEESSCBTT-----BSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEET
T ss_pred             EEEEEcCCCCEEEEEecCcceeEEECCCCcc-----cccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEec
Confidence            999886  88999999999999999987754     222345555667889999999987532 2356788999999999


Q ss_pred             cCCCceeeeeccccccCCCeEEEEEccCCCEEEEe--ccCCcEEEEecCC
Q 022590          246 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC--CEDGAIWRWDAIP  293 (294)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~vw~~~~  293 (294)
                      .........     .+...+..++|+|+++.++++  +.||.|++||+++
T Consensus       229 ~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~  273 (318)
T 4ggc_A          229 CSGACLSAV-----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT  273 (318)
T ss_dssp             TTCCEEEEE-----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred             ccccccccc-----cceeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence            887633222     445679999999999988765  4899999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-35  Score=233.42  Aligned_cols=243  Identities=9%  Similarity=0.070  Sum_probs=185.1

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc-----------------------------cccceec-ccCc
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE-----------------------------KLHKSFV-GHGD   54 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-----------------------------~~~~~~~-~h~~   54 (294)
                      ++-...|.+++|+  |||+ ++|+++.|++|+  |...+                             +....+. .|..
T Consensus        12 ~~~~~~v~sv~~S--pDG~-~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~   86 (588)
T 2j04_A           12 KEFEDWKNNLTWA--RDGT-LYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVC   86 (588)
T ss_dssp             CCCSSSSCCEEEC--TTSC-EEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSC
T ss_pred             hHhhccEEEEEEC--CCCC-EEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCC
Confidence            3566889999998  9999 999999999995  33222                             2112222 4578


Q ss_pred             ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCC-----ceeEEEEecCCCceEEeeecCCcEEEEec
Q 022590           55 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN-----EVLSVDFHPSDIYRIASCGMDNTVKIWSM  129 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~v~~l~~~~~~~~~l~~~~~dg~i~~wd~  129 (294)
                      .|.+++|+| ++.+||+++.||+|++||...  .+..+.    |..     .+.+++|+| ++++|++|+.||+|++||+
T Consensus        87 ~V~~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~----~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkIWd~  158 (588)
T 2j04_A           87 YPRVCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD----SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQFFSI  158 (588)
T ss_dssp             CEEEEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC----CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEEEEC
T ss_pred             cEEEEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc----CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEEEEC
Confidence            899999999 999999999999999999644  444333    443     599999999 9999999999999999999


Q ss_pred             cccccccccceeecCCCCCCCCceeeeceEEe----ecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCce
Q 022590          130 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA----SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTAD  205 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  205 (294)
                      ....... .             .  -..+..+    .+|...|.+++|+++-+++++.|+.+++||+.....      ..
T Consensus       159 ~~~~l~~-~-------------~--~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~------~~  216 (588)
T 2j04_A          159 RKNSENT-P-------------E--FYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSH------QP  216 (588)
T ss_dssp             CCCTTTC-C-------------C--CEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSS------CC
T ss_pred             CCCcccc-c-------------c--ceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCcc------cc
Confidence            8731100 0             0  0012333    568889999999833389999999999999987652      11


Q ss_pred             eeeee-ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEE--ccCCCEEEEecc
Q 022590          206 ILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAM--SYDGSTILSCCE  282 (294)
Q Consensus       206 ~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~  282 (294)
                      ....+ ..|...|.+++|+  +  ..+++++ ++.|++||+.+.+.. ....   +|...|..++|  +|++..|+++++
T Consensus       217 ~~~tL~~~h~~~V~svaFs--g--~~LASa~-~~tIkLWd~~~~~~~-~~~~---gh~~~V~~va~~~s~d~~~La~a~e  287 (588)
T 2j04_A          217 VSRMIQNASRRKITDLKIV--D--YKVVLTC-PGYVHKIDLKNYSIS-SLKT---GSLENFHIIPLNHEKESTILLMSNK  287 (588)
T ss_dssp             CEEEEECCCSSCCCCEEEE--T--TEEEEEC-SSEEEEEETTTTEEE-EEEC---SCCSCCCEEEETTCSSCEEEEECSS
T ss_pred             ceeeecccccCcEEEEEEE--C--CEEEEEe-CCeEEEEECCCCeEE-EEEc---CCCceEEEEEeeeCCCCCEEEEEcC
Confidence            23344 3677889999999  4  5788887 699999999987521 2222   68899999999  999999999999


Q ss_pred             CCcEEEEecC
Q 022590          283 DGAIWRWDAI  292 (294)
Q Consensus       283 dg~i~vw~~~  292 (294)
                      ||+ ++|...
T Consensus       288 dG~-klw~~d  296 (588)
T 2j04_A          288 TSY-KVLLED  296 (588)
T ss_dssp             CEE-EEEESS
T ss_pred             CCC-EEEeec
Confidence            999 999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-34  Score=225.29  Aligned_cols=237  Identities=11%  Similarity=0.093  Sum_probs=191.1

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEc-CCccccceecc--cCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDV-SNEKLHKSFVG--HGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      ..|...|.+++|+  |+++.+|++|+.||.|++||+ .+++. ..+.+  |...|.+++|+|  +.+|++++.|+.|++|
T Consensus        53 ~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iw  127 (342)
T 1yfq_A           53 LRYKHPLLCCNFI--DNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVI  127 (342)
T ss_dssp             EECSSCEEEEEEE--ESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEE
T ss_pred             eecCCceEEEEEC--CCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEE
Confidence            3788999999998  666437999999999999999 77654 77788  999999999999  6799999999999999


Q ss_pred             EcCC---------CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc-cccccccceeecCCCCCCCC
Q 022590           82 NVQT---------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        82 d~~~---------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~  151 (294)
                      |+.+         ++.+..+.    |...|.+++|+| +.  +++++.|+.|++||++. ...                 
T Consensus       128 d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~--l~~~~~d~~i~i~d~~~~~~~-----------------  183 (342)
T 1yfq_A          128 DPRNYGDGVIAVKNLNSNNTK----VKNKIFTMDTNS-SR--LIVGMNNSQVQWFRLPLCEDD-----------------  183 (342)
T ss_dssp             CHHHHTTBCEEEEESCSSSSS----SCCCEEEEEECS-SE--EEEEESTTEEEEEESSCCTTC-----------------
T ss_pred             cccccccccccccCCeeeEEe----eCCceEEEEecC-Cc--EEEEeCCCeEEEEECCccccc-----------------
Confidence            9987         66555554    889999999998 54  99999999999999986 321                 


Q ss_pred             ceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC---------CeeE
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC---------DIWF  219 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---------~i~~  219 (294)
                          ........|...+.+++|+   ++++++++.||.|++|+++......   .......+..+..         .+.+
T Consensus       184 ----~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~  256 (342)
T 1yfq_A          184 ----NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY---NSSKRFAFRCHRLNLKDTNLAYPVNS  256 (342)
T ss_dssp             ----CCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST---TCTTCEEEECCCCCTTCCSSCCCEEE
T ss_pred             ----cceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccc---ccccceeeecccccccccccceeEEE
Confidence                1122344677889999885   5799999999999999998751000   0113444555543         8999


Q ss_pred             EEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccccc-CCCeEEEEEccCCCEEEEeccCCc
Q 022590          220 IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS-KSPIRQTAMSYDGSTILSCCEDGA  285 (294)
Q Consensus       220 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~  285 (294)
                      ++|+|++  .+|++++.||.|++||+.+++.  ...+.  .| ..+|.+++  |++++|++++.||.
T Consensus       257 ~~~s~~~--~~l~~~~~dg~i~vwd~~~~~~--~~~~~--~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          257 IEFSPRH--KFLYTAGSDGIISCWNLQTRKK--IKNFA--KFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             EEECTTT--CCEEEEETTSCEEEEETTTTEE--EEECC--CCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             EEEcCCC--CEEEEecCCceEEEEcCccHhH--hhhhh--cccCCCceEec--CCCCeEEEEecCCc
Confidence            9999998  5899999999999999998763  33343  55 78999999  99999999999998

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.5e-35  Score=229.04  Aligned_cols=245  Identities=11%  Similarity=0.137  Sum_probs=189.7

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEe--CCCCCceEEEeeCCCcEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT--QPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~~~dg~i~vw   81 (294)
                      +..|.+.|++++|+  |+++ +|++++.||.|++||+.+++... +..|...|++++|  +| ++.+|++++.||.|++|
T Consensus        82 ~~~h~~~v~~~~~~--~~~~-~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vw  156 (368)
T 3mmy_A           82 QQMHTGPVLDVCWS--DDGS-KVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFW  156 (368)
T ss_dssp             EEECSSCEEEEEEC--TTSS-EEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEE
T ss_pred             eccccCCEEEEEEC--cCCC-EEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCC-CCCEEEEccCCCcEEEE
Confidence            45799999999998  8998 99999999999999999888765 5669999999999  88 88899999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      |+++++.+..+.    ....+.++.+.+   ..+++++.++.+++|+++.......                   .....
T Consensus       157 d~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~  210 (368)
T 3mmy_A          157 DTRSSNPMMVLQ----LPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR-------------------RIESP  210 (368)
T ss_dssp             CSSCSSCSEEEE----CSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE-------------------ECCCS
T ss_pred             ECCCCcEEEEEe----cCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh-------------------hcccc
Confidence            999999988887    345677777764   4688888999999999987321110                   00111


Q ss_pred             ecCCCceeecceec----ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC------------CeeEEEEccc
Q 022590          162 SVHSNYVDCNRWLG----DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC------------DIWFIKFSCD  225 (294)
Q Consensus       162 ~~~~~~i~~~~~~~----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~  225 (294)
                      ..+...+.++.+..    ..+++++.|+.|++||++....      ......+..+..            .+.+++|+|+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  284 (368)
T 3mmy_A          211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV  284 (368)
T ss_dssp             CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH------HHHSEEEECSEEC----CCCEEECCEEEEEECTT
T ss_pred             ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc------cccceeeeeeecccccccccccccceEEEEEecC
Confidence            11222233333332    3499999999999999987631      123344444443            6999999999


Q ss_pred             CCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          226 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       226 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      +  .+|++++.||.|++||+++++  ....+.  .|..+|++++|+|+|++|++++.|+..+.|++
T Consensus       285 ~--~~l~s~~~dg~i~iwd~~~~~--~~~~~~--~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          285 H--GTLATVGSDGRFSFWDKDART--KLKTSE--QLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             T--CCEEEEETTSCEEEEETTTTE--EEEECC--CCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             C--CEEEEEccCCeEEEEECCCCc--EEEEec--CCCCCceEEEECCCCCeEEEEecccccccccc
Confidence            8  589999999999999999875  334444  77889999999999999999999886555443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.4e-34  Score=226.82  Aligned_cols=215  Identities=12%  Similarity=0.194  Sum_probs=177.4

Q ss_pred             CccccceecccCcceEEEEeCCCCC-ceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec
Q 022590           42 NEKLHKSFVGHGDSINEIRTQPLKP-SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM  120 (294)
Q Consensus        42 ~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~  120 (294)
                      ..+....+.+|...|++++|+| ++ ++|++|+.||.|++||+.+++....+.. .+|...|.+++|+|.++.+|++++.
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~  139 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHP-THPTTVAVGSKGGDIILWDYDVQNKTSFIQG-MGPGDAITGMKFNQFNTNQLFVSSI  139 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECS-SCTTEEEEEEBTSCEEEEETTSTTCEEEECC-CSTTCBEEEEEEETTEEEEEEEEET
T ss_pred             ccceEEeccCCCCCEEEEEECC-CCCCEEEEEcCCCeEEEEeCCCcccceeeec-CCcCCceeEEEeCCCCCCEEEEEeC
Confidence            3445567788999999999999 66 8999999999999999998887766542 2599999999999966789999999


Q ss_pred             CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCC
Q 022590          121 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQS  198 (294)
Q Consensus       121 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~  198 (294)
                      |+.|++||++...                     .........|...|.+++|+  +++|++++.|+.|++||++. +  
T Consensus       140 d~~i~iwd~~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~--  195 (383)
T 3ei3_B          140 RGATTLRDFSGSV---------------------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG-H--  195 (383)
T ss_dssp             TTEEEEEETTSCE---------------------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-C--
T ss_pred             CCEEEEEECCCCc---------------------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-C--
Confidence            9999999998521                     11122233456889999997  88999999999999999942 2  


Q ss_pred             CCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc--eeeeeccccccCCCeEEEEEcc-CCC
Q 022590          199 PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIRQTAMSY-DGS  275 (294)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~~~~~s~-~~~  275 (294)
                             .+..+..|...+.+++|+|++. .++++++.|+.|++||+++.+.  .....+   .|...|.+++|+| +++
T Consensus       196 -------~~~~~~~h~~~v~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~  264 (383)
T 3ei3_B          196 -------EIFKEKLHKAKVTHAEFNPRCD-WLMATSSVDATVKLWDLRNIKDKNSYIAEM---PHEKPVNAAYFNPTDST  264 (383)
T ss_dssp             -------EEEEEECSSSCEEEEEECSSCT-TEEEEEETTSEEEEEEGGGCCSTTCEEEEE---ECSSCEEEEEECTTTSC
T ss_pred             -------EEEEeccCCCcEEEEEECCCCC-CEEEEEeCCCEEEEEeCCCCCcccceEEEe---cCCCceEEEEEcCCCCC
Confidence                   5677788899999999999984 3899999999999999998432  122222   5778999999999 999


Q ss_pred             EEEEeccCCcEEEEecCC
Q 022590          276 TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       276 ~l~s~~~dg~i~vw~~~~  293 (294)
                      +|++++.||.|++||+++
T Consensus       265 ~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          265 KLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             EEEEEESSSEEEEEETTB
T ss_pred             EEEEEcCCCcEEEEECCC
Confidence            999999999999999864

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-34  Score=228.64  Aligned_cols=234  Identities=10%  Similarity=0.035  Sum_probs=180.1

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCc-----ceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD-----SINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      .|++.|.+++|+  |+|+ +||+++.||.|++||.+.  .+..+. |..     .|.+++|+| ++++|++|+.||+|++
T Consensus        83 ~~~~~V~~vawS--PdG~-~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           83 QPVCYPRVCKPS--PIDD-WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGELQF  155 (588)
T ss_dssp             SCSCCEEEEEEC--SSSS-CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSEEEE
T ss_pred             CCCCcEEEEEEC--CCCC-EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCEEEE
Confidence            568899999998  9999 999999999999999544  555666 665     499999999 9999999999999999


Q ss_pred             EEcCCCce-------EEEeec-cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCc
Q 022590           81 WNVQTGIC-------ILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  152 (294)
Q Consensus        81 wd~~~~~~-------~~~~~~-~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (294)
                      ||+.++..       +..+.. ..+|...|.+++|+| ++  +++++.|+++++||+.....                  
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~------------------  214 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSH------------------  214 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSS------------------
T ss_pred             EECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCcc------------------
Confidence            99988753       455421 136889999999999 76  88889999999999987320                  


Q ss_pred             eeeeceEEe-ecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEE--cccCCcc
Q 022590          153 YVQFPVFIA-SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF--SCDFHYN  229 (294)
Q Consensus       153 ~~~~~~~~~-~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~  229 (294)
                        ......+ .+|...|.+++|+++.+++++ +++|++||+..++         .......|...+..++|  +|++  .
T Consensus       215 --~~~~~tL~~~h~~~V~svaFsg~~LASa~-~~tIkLWd~~~~~---------~~~~~~gh~~~V~~va~~~s~d~--~  280 (588)
T 2j04_A          215 --QPVSRMIQNASRRKITDLKIVDYKVVLTC-PGYVHKIDLKNYS---------ISSLKTGSLENFHIIPLNHEKES--T  280 (588)
T ss_dssp             --CCCEEEEECCCSSCCCCEEEETTEEEEEC-SSEEEEEETTTTE---------EEEEECSCCSCCCEEEETTCSSC--E
T ss_pred             --ccceeeecccccCcEEEEEEECCEEEEEe-CCeEEEEECCCCe---------EEEEEcCCCceEEEEEeeeCCCC--C
Confidence              0012334 478899999999988999887 6999999998654         21222268899999999  9888  6


Q ss_pred             eEEEEcCCCeEEEEeccCC-----Ccee------eee-------ccccccCCCeEEEEEccCCCEEEEecc
Q 022590          230 AAAIGNREGKIFVWELQSS-----PPVL------IAR-------LSHAQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~-----~~~~------~~~-------~~~~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                      .+++++++|. ++|..+.-     ....      ...       +....+...|.+++|+|||+.+|+++.
T Consensus       281 ~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          281 ILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             EEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEEEEEEe
Confidence            8999999999 99987421     0000      000       000011335899999999999999864

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.7e-33  Score=209.79  Aligned_cols=238  Identities=13%  Similarity=0.108  Sum_probs=158.7

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc---cccceecccCc-------------------------ceEEEEe
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE---KLHKSFVGHGD-------------------------SINEIRT   61 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~h~~-------------------------~v~~~~~   61 (294)
                      .+.++-|-+.-..++.+++++. ..|++|+..++   +++++++.|+.                         .|+++++
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~  119 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC  119 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence            3566677543333445666665 59999999988   77777777765                         4556666


Q ss_pred             CCCC----CceEEEeeC--------------------CCcEEEEEc-CCCceEEEeeccCCCCCceeEEEEec--CCCce
Q 022590           62 QPLK----PSLVVSASK--------------------DESVRLWNV-QTGICILIFAGAGGHRNEVLSVDFHP--SDIYR  114 (294)
Q Consensus        62 ~~~~----~~~l~s~~~--------------------dg~i~vwd~-~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~~~  114 (294)
                      +| +    ++.+++++.                    |+.|++|++ .+++.+..+.   .|...++.++|+|  .++.+
T Consensus       120 sp-d~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~---~~~~~v~~l~fs~~~g~~~~  195 (356)
T 2w18_A          120 SS-DDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF---LMPPEETILTFAEVQGMQEA  195 (356)
T ss_dssp             -------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE---ECCCSSCEEEEEEEETSTTE
T ss_pred             CC-CccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeec---cCCCceeeEEeeccCCCCce
Confidence            66 6    666666553                    788888888 4466666666   5777788877776  35688


Q ss_pred             EEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC---ceeeccee--cce------------
Q 022590          115 IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN---YVDCNRWL--GDF------------  177 (294)
Q Consensus       115 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~--~~~------------  177 (294)
                      |++++.|++|++||++++                       ..+..+..|..   .+.+++|+  +.+            
T Consensus       196 LaSgS~D~TIkIWDl~TG-----------------------k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~  252 (356)
T 2w18_A          196 LLGTTIMNNIVIWNLKTG-----------------------QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKES  252 (356)
T ss_dssp             EEEEETTSEEEEEETTTC-----------------------CEEEEEECCC---CCCEEEEEEETTEEEEEEC-------
T ss_pred             EEEecCCCcEEEEECCCC-----------------------cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcce
Confidence            999999999999999983                       33444444332   44444565  444            


Q ss_pred             EEEeeCCCeEEEecCCCCCCCCCCCCceeeeee-----ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCcee
Q 022590          178 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-----PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL  252 (294)
Q Consensus       178 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  252 (294)
                      +++|+.|++|++||..+++.         +..+     ..+...+.  ..+.++  .++++|+.|++|+|||+.+++.  
T Consensus       253 laSGs~D~tIklWd~~tgk~---------l~v~~~~~p~Gh~~~~l--sg~~sg--~~lASgS~DgTIkIWDl~tGk~--  317 (356)
T 2w18_A          253 ESLRSPVFQLIVINPKTTLS---------VGVMLYCLPPGQAGRFL--EGDVKD--HCAAAILTSGTIAIWDLLLGQC--  317 (356)
T ss_dssp             -----CCEEEEEEETTTTEE---------EEEEEECCCTTCCCCEE--EEEEET--TEEEEEETTSCEEEEETTTCSE--
T ss_pred             eeccCCCcEEEEEECCCCEE---------EEEEEeeccCCCcceeE--ccccCC--CEEEEEcCCCcEEEEECCCCcE--
Confidence            36788999999999987652         2222     12333332  233334  5899999999999999999874  


Q ss_pred             eeeccccccCCCe-EEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          253 IARLSHAQSKSPI-RQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       253 ~~~~~~~~~~~~v-~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ...+.  +|...+ ..++|+|||++|++|+.|++|+|||+.
T Consensus       318 l~tL~--gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          318 TALLP--PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             EEEEC--CC--CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             EEEec--CCCCCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence            34444  555544 468999999999999999999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=9.2e-34  Score=221.48  Aligned_cols=205  Identities=15%  Similarity=0.120  Sum_probs=166.4

Q ss_pred             ccCceeEEEEEeecCCCceEEE--EeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLV--AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~--~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .++..+.+++|+  |||+ +++  +++.|++|+|||+.+++.+..+. |...|.+++|+| ++++|++++.+ .+++|+.
T Consensus       131 ~~~~~~~~v~fS--pDg~-~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~  204 (365)
T 4h5i_A          131 NADDYTKLVYIS--REGT-VAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVIST  204 (365)
T ss_dssp             CTTCCEEEEEEC--TTSS-CEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEET
T ss_pred             CcccCEEEEEEc--CCCC-EEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEe
Confidence            344567888887  9998 665  45578999999999999888886 778899999999 89999998865 5667777


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC----cEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      .+++.+.... ..+|...|.+++|+| ++.++++++.|+    .+++|++......                   .....
T Consensus       205 ~~~~~~~~~~-~~~~~~~v~~v~fsp-dg~~l~~~s~d~~~~~~i~~~~~~~~~~~-------------------~~~~~  263 (365)
T 4h5i_A          205 VTGSCIARKT-DFDKNWSLSKINFIA-DDTVLIAASLKKGKGIVLTKISIKSGNTS-------------------VLRSK  263 (365)
T ss_dssp             TTCCEEEEEC-CCCTTEEEEEEEEEE-TTEEEEEEEESSSCCEEEEEEEEETTEEE-------------------EEEEE
T ss_pred             ccCcceeeee-cCCCCCCEEEEEEcC-CCCEEEEEecCCcceeEEeecccccceec-------------------ceeee
Confidence            7777654332 226888999999999 889999999887    5788888763211                   22345


Q ss_pred             EeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee-ecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          160 IASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      .+..|...|.+++|+  +++|++|+.|+.|+|||+++++         .+..+ ..|...|++++|+|++  .+|++|+.
T Consensus       264 ~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~---------~~~~~~~gH~~~V~~v~fSpdg--~~laS~S~  332 (365)
T 4h5i_A          264 QVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS---------MSKIFKQAHSFAITEVTISPDS--TYVASVSA  332 (365)
T ss_dssp             EEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE---------EEEEETTSSSSCEEEEEECTTS--CEEEEEET
T ss_pred             eecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc---------EEEEecCcccCCEEEEEECCCC--CEEEEEeC
Confidence            677899999999997  8899999999999999998765         45554 6799999999999999  69999999


Q ss_pred             CCeEEEEeccCC
Q 022590          237 EGKIFVWELQSS  248 (294)
Q Consensus       237 dg~i~i~d~~~~  248 (294)
                      |++|+|||+...
T Consensus       333 D~tvrvw~ip~~  344 (365)
T 4h5i_A          333 ANTIHIIKLPLN  344 (365)
T ss_dssp             TSEEEEEECCTT
T ss_pred             CCeEEEEEcCCC
Confidence            999999999654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=2.4e-33  Score=224.15  Aligned_cols=217  Identities=16%  Similarity=0.244  Sum_probs=175.1

Q ss_pred             eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC----------CceEEEeeccCCCCCceeEEEEecCCCceEEe
Q 022590           48 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT----------GICILIFAGAGGHRNEVLSVDFHPSDIYRIAS  117 (294)
Q Consensus        48 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~  117 (294)
                      ....|.+.|++++|+|+++.+|++++.||.|++||+.+          ...+..+.   +|...|.+++|+|.+..+|++
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR---GHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE---CCSSCCCCEEECTTSTTEEEE
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec---CCCCCeEEEEeCCCCCCeEEE
Confidence            44579999999999994478999999999999999986          46666666   699999999999944449999


Q ss_pred             eecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCC
Q 022590          118 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKM  194 (294)
Q Consensus       118 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~  194 (294)
                      |+.||.|++||+.......                ....+...+..|...|.+++|+   +.+|++++.|+.|++||+++
T Consensus       200 ~~~dg~i~vwd~~~~~~~~----------------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~  263 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEH----------------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN  263 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGG----------------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             EeCCCeEEEEeCCCCCCCC----------------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence            9999999999998732110                0112345566899999999996   57899999999999999997


Q ss_pred             CCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590          195 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (294)
                      ...      ...+..+..|...+.+++|+|++. .++++|+.||.|++||++.... ....+.  .|...|.+++|+|++
T Consensus       264 ~~~------~~~~~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~-~~~~~~--~h~~~v~~i~~sp~~  333 (430)
T 2xyi_A          264 NNT------SKPSHTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKL-KLHSFE--SHKDEIFQVQWSPHN  333 (430)
T ss_dssp             SCS------SSCSEEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTS-CSEEEE--CCSSCEEEEEECSSC
T ss_pred             CCC------CcceeEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCC-CeEEee--cCCCCEEEEEECCCC
Confidence            631      124555667889999999999985 4789999999999999998532 233333  677899999999998


Q ss_pred             C-EEEEeccCCcEEEEecCC
Q 022590          275 S-TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       275 ~-~l~s~~~dg~i~vw~~~~  293 (294)
                      + +|++++.||.|++||+..
T Consensus       334 ~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          334 ETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             TTEEEEEETTSCCEEEEGGG
T ss_pred             CCEEEEEeCCCcEEEEeCCC
Confidence            5 689999999999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=4.6e-33  Score=221.11  Aligned_cols=264  Identities=20%  Similarity=0.295  Sum_probs=179.4

Q ss_pred             ccCceeEEEEEeecC-CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCC--CceEEEeeCCCcEEEEE
Q 022590            6 QKEESFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK--PSLVVSASKDESVRLWN   82 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~i~vwd   82 (294)
                      .|...|.+++|+  | ++. +|++++.||.|++||+.+++....+. +...+.++.|+|.+  +.++++++.||.|++||
T Consensus        97 ~~~~~v~~~~~~--~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  172 (408)
T 4a11_B           97 VHRYSVETVQWY--PHDTG-MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCD  172 (408)
T ss_dssp             CCSSCEEEEEEC--TTCTT-CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEE
T ss_pred             cCCCcEEEEEEc--cCCCc-EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEe
Confidence            599999999998  7 555 89999999999999999998887776 77889999999842  33899999999999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.+++.+..+.   +|...|.+++|+|++..+|++++.||.|++||++.............       ............
T Consensus       173 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  242 (408)
T 4a11_B          173 LKSGSCSHILQ---GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN-------GKKSQAVESANT  242 (408)
T ss_dssp             SSSSCCCEEEC---CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT-------TCSCCCTTTSSC
T ss_pred             CCCcceeeeec---CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc-------cccceeeccccc
Confidence            99999888887   69999999999994444699999999999999987432111100000       000011222335


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC--------------------------------------C
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE--------------------------------------G  202 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------------------------------~  202 (294)
                      .|...|.+++|+  +++|++++.|+.|++||+++++.....                                      .
T Consensus       243 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~  322 (408)
T 4a11_B          243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY  322 (408)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETT
T ss_pred             cccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECc
Confidence            788999999997  779999999999999999886542211                                      1


Q ss_pred             CceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEEec
Q 022590          203 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCC  281 (294)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~  281 (294)
                      ....+..+..|...|.+++|+|++  .+|++++.||.|++||+++.++.......       -....+.| ....+.+.+
T Consensus       323 ~~~~~~~~~~~~~~v~~~~~s~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  393 (408)
T 4a11_B          323 SGEQITMLKGHYKTVDCCVFQSNF--QELYSGSRDCNILAWVPSLYEPVPDDDET-------TTKSQLNPAFEDAWSSSD  393 (408)
T ss_dssp             TCCEEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEEEEEECC-----------------------------------
T ss_pred             CCcceeeeccCCCeEEEEEEcCCC--CEEEEECCCCeEEEEeCCCCCccCCCCce-------EeccccccccceeecccC
Confidence            224566677788999999999998  68999999999999999988643322211       11123333 334455677


Q ss_pred             cCCcEEEEecC
Q 022590          282 EDGAIWRWDAI  292 (294)
Q Consensus       282 ~dg~i~vw~~~  292 (294)
                      .|+.+++|+..
T Consensus       394 ~~~~~~~W~~~  404 (408)
T 4a11_B          394 EEGGTSAWSHP  404 (408)
T ss_dssp             -----------
T ss_pred             ccCceeecCCc
Confidence            89999999753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.5e-33  Score=216.49  Aligned_cols=225  Identities=15%  Similarity=0.133  Sum_probs=177.9

Q ss_pred             ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc----eEEEeeccCCCCCceeEEEEecC-CCceEEeeecC
Q 022590           47 KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI----CILIFAGAGGHRNEVLSVDFHPS-DIYRIASCGMD  121 (294)
Q Consensus        47 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~l~~~~~-~~~~l~~~~~d  121 (294)
                      ..+.+|.+.|++++|+| ++++|++|+.||.|++||+.++.    ....+.   +|...|.+++|+|. ++.+|++++.|
T Consensus         5 ~~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~d~~~l~s~~~d   80 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR---AHDSSIVAIDWASPEYGRIIASASYD   80 (351)
T ss_dssp             CEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE---CCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             ccCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceec---cCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence            45678999999999999 88999999999999999998763    445555   79999999999984 38899999999


Q ss_pred             CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee----cceEEEeeCCCeEEEecCCCCCC
Q 022590          122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQ  197 (294)
Q Consensus       122 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~  197 (294)
                      |.|++||++......              ......+...+..|...|.+++|+    ++++++++.|+.|++||+++++.
T Consensus        81 g~v~vwd~~~~~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  146 (351)
T 3f3f_A           81 KTVKLWEEDPDQEEC--------------SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD  146 (351)
T ss_dssp             SCEEEEEECTTSCTT--------------SSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred             CeEEEEecCCCcccc--------------cccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence            999999998742110              000123466677899999999997    56899999999999999998764


Q ss_pred             CCCCCCceeeeee----ecCCCCeeEEEEccc---CCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEE
Q 022590          198 SPGEGTADILQKY----PVPECDIWFIKFSCD---FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAM  270 (294)
Q Consensus       198 ~~~~~~~~~~~~~----~~~~~~i~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~  270 (294)
                      .............    ..+...+.+++|+|+   +  .++++++.++.+.+|+....+......+.  .|...|++++|
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~i~~~~~  222 (351)
T 3f3f_A          147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP--EKLAVSALEQAIIYQRGKDGKLHVAAKLP--GHKSLIRSISW  222 (351)
T ss_dssp             TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC--CEEEEEETTEEEEEEECTTSCEEEEEECC--CCCSCEEEEEE
T ss_pred             hccccccccccccccccCCcccceeEEEeccCCCCC--cEEEEecCCCcEEEEccCCCceeeeeecC--CCCcceeEEEE
Confidence            3322111111111    145678999999997   4  68999999999988888777644455544  78899999999


Q ss_pred             ccCC----CEEEEeccCCcEEEEecCC
Q 022590          271 SYDG----STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       271 s~~~----~~l~s~~~dg~i~vw~~~~  293 (294)
                      +|++    ++|++|+.||.|++||++.
T Consensus       223 ~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          223 APSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             CCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             CCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            9998    8999999999999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-33  Score=217.17  Aligned_cols=214  Identities=16%  Similarity=0.230  Sum_probs=177.3

Q ss_pred             cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEE
Q 022590           46 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK  125 (294)
Q Consensus        46 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~  125 (294)
                      ...+.+|.+.|++++|+| ++++|++|+.||.|++||+.+++.+..+.   +|...|.+++|+| ++.+|++++.||.|+
T Consensus        25 ~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLD---GHTGTIWSIDVDC-FTKYCVTGSADYSIK   99 (369)
T ss_dssp             EEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTTEEE
T ss_pred             cEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhh---hcCCcEEEEEEcC-CCCEEEEEeCCCeEE
Confidence            356789999999999999 88999999999999999999999998887   6999999999999 889999999999999


Q ss_pred             EEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCC-----CeEEEecCCCCCCC
Q 022590          126 IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD-----NEIVLWEPKMKEQS  198 (294)
Q Consensus       126 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d-----~~i~iwd~~~~~~~  198 (294)
                      +||+.+.                       .....+. +...+.++.|+  ++++++++.+     +.|++||++.....
T Consensus       100 iwd~~~~-----------------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~  155 (369)
T 3zwl_B          100 LWDVSNG-----------------------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSAT  155 (369)
T ss_dssp             EEETTTC-----------------------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTT
T ss_pred             EEECCCC-----------------------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccc
Confidence            9999873                       2333344 78889999997  8899999998     99999999876532


Q ss_pred             CCCC--CceeeeeeecCCC--CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC
Q 022590          199 PGEG--TADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG  274 (294)
Q Consensus       199 ~~~~--~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  274 (294)
                      ....  ..........+..  .+.+++|+|++  .++++++.||.|++||+++... ....+.  .|...|.+++|+|++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~-~~~~~~--~~~~~v~~~~~~~~~  230 (369)
T 3zwl_B          156 HELTKVSEEPIHKIITHEGLDAATVAGWSTKG--KYIIAGHKDGKISKYDVSNNYE-YVDSID--LHEKSISDMQFSPDL  230 (369)
T ss_dssp             CCEEEECSSCSEEEECCTTCCCEEEEEECGGG--CEEEEEETTSEEEEEETTTTTE-EEEEEE--CCSSCEEEEEECTTS
T ss_pred             eeecccccceeeeccCCcCccceeEEEEcCCC--CEEEEEcCCCEEEEEECCCCcE-eEEEEe--cCCCceeEEEECCCC
Confidence            2110  1112334444444  89999999998  5899999999999999988422 333333  677899999999999


Q ss_pred             CEEEEeccCCcEEEEecCC
Q 022590          275 STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       275 ~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++|++++.||.|++||+++
T Consensus       231 ~~l~~~~~d~~i~v~d~~~  249 (369)
T 3zwl_B          231 TYFITSSRDTNSFLVDVST  249 (369)
T ss_dssp             SEEEEEETTSEEEEEETTT
T ss_pred             CEEEEecCCceEEEEECCC
Confidence            9999999999999999874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.3e-33  Score=216.98  Aligned_cols=222  Identities=10%  Similarity=0.125  Sum_probs=167.0

Q ss_pred             EEEeecCCeEEEEEcC---------Cccccceec-ccCcceEEEEeCCC-CCceEEEeeCCCcEEEEEcCCCceEEEeec
Q 022590           26 LVAGGINGIIRVIDVS---------NEKLHKSFV-GHGDSINEIRTQPL-KPSLVVSASKDESVRLWNVQTGICILIFAG   94 (294)
Q Consensus        26 l~~~~~dg~i~iw~~~---------~~~~~~~~~-~h~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~   94 (294)
                      +++++.|++|++|+..         +++.+..+. +|.++|.+++|+|. +++++++++.||+|++||+++++.......
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  167 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA  167 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec
Confidence            8999999999999765         444344443 57789999999982 467899999999999999999988666542


Q ss_pred             cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece-EEeec-CCCceeecc
Q 022590           95 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV-FIASV-HSNYVDCNR  172 (294)
Q Consensus        95 ~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~  172 (294)
                        .|...+.+++|+| ++.+|++|+.||.|++||+++..                       .. ..+.. |..+|.+++
T Consensus       168 --~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~-----------------------~~~~~~~~~h~~~v~~l~  221 (343)
T 3lrv_A          168 --KSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPD-----------------------QASSRFPVDEEAKIKEVK  221 (343)
T ss_dssp             --CSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTT-----------------------SCCEECCCCTTSCEEEEE
T ss_pred             --CCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCC-----------------------CCccEEeccCCCCEEEEE
Confidence              3666899999999 89999999999999999999832                       22 34555 999999999


Q ss_pred             ee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCe--eEEEEcccCCcceEEEEcC-CCeEEEEeccC
Q 022590          173 WL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDI--WFIKFSCDFHYNAAAIGNR-EGKIFVWELQS  247 (294)
Q Consensus       173 ~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~  247 (294)
                      |+  +.+|++++ ++.|++||+++.+....      +..+..+...+  .+++|+|++  .+|++++. |+.+++|++..
T Consensus       222 fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g--~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          222 FADNGYWMVVEC-DQTVVCFDLRKDVGTLA------YPTYTIPEFKTGTVTYDIDDSG--KNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             ECTTSSEEEEEE-SSBEEEEETTSSTTCBS------SCCCBC-----CCEEEEECTTS--SEEEEEETTTTEEEEEEECT
T ss_pred             EeCCCCEEEEEe-CCeEEEEEcCCCCccee------ecccccccccccceEEEECCCC--CEEEEecCCCCcEEEEEEcc
Confidence            97  77999988 55999999998763211      11111122222  469999998  58888887 99999999977


Q ss_pred             CCceeeeeccccccCCCeEEEEEcc---CCCEEEEeccCCcEEEEe
Q 022590          248 SPPVLIARLSHAQSKSPIRQTAMSY---DGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~s~~~dg~i~vw~  290 (294)
                      .......        .++..++|.|   +.+.|++++.||.+.++-
T Consensus       293 ~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          293 KTKNWTK--------DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             TTCSEEE--------EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             cccceEe--------cCceeEecCccccccceeEEEecCCceEEEE
Confidence            6533222        3467788888   778888888888887764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.9e-33  Score=236.98  Aligned_cols=215  Identities=19%  Similarity=0.239  Sum_probs=175.5

Q ss_pred             cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC--CCceEEEeeccCCCCCceeEEEEecCC--CceEEeeecC
Q 022590           46 HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ--TGICILIFAGAGGHRNEVLSVDFHPSD--IYRIASCGMD  121 (294)
Q Consensus        46 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~l~~~~~d  121 (294)
                      +..+.+|.++|++++|+| ++++|++|+.||+|++||+.  +++....+.   +|.++|++++|+| +  +.+|++|+.|
T Consensus         2 ~~~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~---~h~~~V~~l~~s~-~~~~~~l~s~s~D   76 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLT---GHEGPVWRVDWAH-PKFGTILASCSYD   76 (753)
T ss_dssp             ------CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEEC---CCSSCEEEEEECC-TTSCSEEEEEETT
T ss_pred             eeecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceecc---CCcCceEEEEecC-CCCCCEEEEEeCC
Confidence            356789999999999999 88999999999999999997  445566666   7999999999998 5  8899999999


Q ss_pred             CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee----cceEEEeeCCCeEEEecCCCCCC
Q 022590          122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----GDFILSKSVDNEIVLWEPKMKEQ  197 (294)
Q Consensus       122 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~  197 (294)
                      |.|++||+++..                     .........|...|.++.|+    ++.+++++.||.|++||++....
T Consensus        77 g~I~vwd~~~~~---------------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~  135 (753)
T 3jro_A           77 GKVLIWKEENGR---------------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  135 (753)
T ss_dssp             SCEEEEEEETTE---------------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC
T ss_pred             CeEEEEECCCCc---------------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC
Confidence            999999998732                     22456677899999999997    56999999999999999987642


Q ss_pred             CCCCCCceeeeeeecCCCCeeEEEEcccC-----------CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeE
Q 022590          198 SPGEGTADILQKYPVPECDIWFIKFSCDF-----------HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR  266 (294)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  266 (294)
                      .       .......+...+.+++|+|..           ++.++++|+.||.|++||+++.............|..+|+
T Consensus       136 ~-------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~  208 (753)
T 3jro_A          136 T-------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR  208 (753)
T ss_dssp             C-------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEE
T ss_pred             c-------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEE
Confidence            1       234556778899999999941           1268999999999999999987643333333347889999


Q ss_pred             EEEEccC---CCEEEEeccCCcEEEEecCC
Q 022590          267 QTAMSYD---GSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       267 ~~~~s~~---~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +++|+|+   +++|++|+.||.|++||+++
T Consensus       209 ~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~  238 (753)
T 3jro_A          209 DVAWSPTVLLRSYLASVSQDRTCIIWTQDN  238 (753)
T ss_dssp             EEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred             EEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence            9999999   89999999999999999875

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=8.2e-33  Score=207.15  Aligned_cols=205  Identities=11%  Similarity=0.119  Sum_probs=147.2

Q ss_pred             CceeEEEEEeecCC----CceEEEEeec--------------------CCeEEEEEc-CCccccceecccCcceEEEEeC
Q 022590            8 EESFYTVSWACNVD----GIPFLVAGGI--------------------NGIIRVIDV-SNEKLHKSFVGHGDSINEIRTQ   62 (294)
Q Consensus         8 ~~~v~~~~~~~~~~----~~~~l~~~~~--------------------dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~   62 (294)
                      ...|.+++++  |+    ++ ++++++.                    |+.|++|++ .+++.+..+.+|...++.++|+
T Consensus       111 ~~~v~sla~s--pd~~~~~~-~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs  187 (356)
T 2w18_A          111 IREIRALFCS--SDDESEKQ-VLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFA  187 (356)
T ss_dssp             EEEEEEECC--------CCE-EEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEE
T ss_pred             ccceEEEEEC--CCcccccc-EEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEee
Confidence            3466667766  66    65 6665543                    888888888 4577777777888888888887


Q ss_pred             CC--CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceE------------EeeecCCcEEEEe
Q 022590           63 PL--KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI------------ASCGMDNTVKIWS  128 (294)
Q Consensus        63 ~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l------------~~~~~dg~i~~wd  128 (294)
                      |.  ++.+|++|+.|++|+|||+.+++++..+.....+...+.+++|+| ++.++            ++|+.|++|++||
T Consensus       188 ~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklWd  266 (356)
T 2w18_A          188 EVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVIN  266 (356)
T ss_dssp             EEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEEE
T ss_pred             ccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence            72  567899999999999999999999999973212234688889999 77765            6688999999999


Q ss_pred             ccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeee
Q 022590          129 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ  208 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  208 (294)
                      ..++.......+                  ....+|...+.+..+++.++++++.|++|+|||+++++         .+.
T Consensus       267 ~~tgk~l~v~~~------------------~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk---------~l~  319 (356)
T 2w18_A          267 PKTTLSVGVMLY------------------CLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQ---------CTA  319 (356)
T ss_dssp             TTTTEEEEEEEE------------------CCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCS---------EEE
T ss_pred             CCCCEEEEEEEe------------------eccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCc---------EEE
Confidence            987432110000                  00134555455555668899999999999999999876         677


Q ss_pred             eeecCCCCee-EEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          209 KYPVPECDIW-FIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       209 ~~~~~~~~i~-~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      .+..|...+. .++|+|++  .+|++|+.|++|++||+
T Consensus       320 tL~gH~~~vvs~vafSPDG--~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          320 LLPPVSDQHWSFVKWSGTD--SHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EECCC--CCCCEEEECSSS--SEEEEECTTSCEEEEEE
T ss_pred             EecCCCCCeEEEEEECCCC--CEEEEEECCCcEEEecC
Confidence            7777766554 58999999  59999999999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1.5e-31  Score=208.34  Aligned_cols=249  Identities=10%  Similarity=0.051  Sum_probs=181.8

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-ce
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-IC   88 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~   88 (294)
                      .+..+++.  ++++.++++|+.|+.|++||..+++.+..+. |..+|.+++|++ +  .++++ .|+.|++||+.++ +.
T Consensus        60 ~~~~~~~~--~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~-~--~~~~~-~~~~i~i~d~~~~~~~  132 (355)
T 3vu4_A           60 HLSKVRML--HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSR-E--FIVVS-YGDVISVFKFGNPWKR  132 (355)
T ss_dssp             CCCEEEEC--TTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECS-S--EEEEE-ETTEEEEEESSTTCCB
T ss_pred             CeEEEEEc--CCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcC-C--EEEEE-EcCEEEEEECCCCcee
Confidence            46777777  5565345778889999999999999988887 677999999988 4  34444 4789999999988 66


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEe--eecCCcEEEEeccccccccccceeecCCCCCCCCceeeec-eEEeecCC
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIAS--CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP-VFIASVHS  165 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  165 (294)
                      +..+.   .   +...+++++   .++++  |+.||.|++||++...........        .......+ ...+.+|.
T Consensus       133 ~~~~~---~---~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~--------~~~~~~~p~~~~~~~h~  195 (355)
T 3vu4_A          133 ITDDI---R---FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQG--------VQQKAILGKGVLIKAHT  195 (355)
T ss_dssp             SSCCE---E---EEEEEEEET---TEEEEEESSCTTCEEEEECCC--------------------------CCEEECCCS
T ss_pred             eEEec---c---CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCcccccccc--------ccccccCcccEEEEccC
Confidence            66555   2   445566766   44554  689999999999874311100000        00000123 66788999


Q ss_pred             Cceeeccee--cceEEEeeCCCe-EEEecCCCCCCCCCCCCceeeeeee-c-CCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          166 NYVDCNRWL--GDFILSKSVDNE-IVLWEPKMKEQSPGEGTADILQKYP-V-PECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       166 ~~i~~~~~~--~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~-~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      ..|.+++|+  +++|++++.|++ |++||+++++         .+..+. . |...|.+++|+|++  .+|++++.|+.|
T Consensus       196 ~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~---------~~~~~~~g~h~~~v~~~~~s~~~--~~l~s~s~d~~v  264 (355)
T 3vu4_A          196 NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV---------LVREFRRGLDRADVVDMKWSTDG--SKLAVVSDKWTL  264 (355)
T ss_dssp             SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC---------EEEEEECTTCCSCEEEEEECTTS--CEEEEEETTCEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc---------EEEEEEcCCCCCcEEEEEECCCC--CEEEEEECCCEE
Confidence            999999997  889999999998 9999999765         566676 4 88999999999998  689999999999


Q ss_pred             EEEeccCCCceeeeecc-------------------ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          241 FVWELQSSPPVLIARLS-------------------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++||++.........+.                   ......+...++|++++++|++++.||.+++|++.+
T Consensus       265 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          265 HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             EEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             EEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            99999765322111110                   011123347799999999999999999999999753

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=5.7e-31  Score=208.08  Aligned_cols=235  Identities=13%  Similarity=0.100  Sum_probs=182.3

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCCcEEEEEcCCCc
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGI   87 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~   87 (294)
                      ..+.+++|+  |+|+.++++++.|+.|++||+.+++.+..+..+. .+.+++|+| ++++| ++++.++.|++||+.+++
T Consensus        32 ~~~~~~~~s--~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~  107 (391)
T 1l0q_A           32 SNPMGAVIS--PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSP-DGKQVYVTNMASSTLSVIDTTSNT  107 (391)
T ss_dssp             SSEEEEEEC--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCcceEEEC--CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECC-CCCEEEEEECCCCEEEEEECCCCe
Confidence            458888887  9998344778899999999999999888887655 899999999 66665 555677999999999999


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceE-EeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  166 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (294)
                      .+..+.    +...+.+++|+| ++..+ ++++.|+.|++||+++.                       .....+..+ .
T Consensus       108 ~~~~~~----~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~-----------------------~~~~~~~~~-~  158 (391)
T 1l0q_A          108 VAGTVK----TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTK-----------------------AVINTVSVG-R  158 (391)
T ss_dssp             EEEEEE----CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTT-----------------------EEEEEEECC-S
T ss_pred             EEEEEe----CCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCC-----------------------cEEEEEecC-C
Confidence            888877    455789999999 66655 78888999999999873                       223333333 3


Q ss_pred             ceeeccee--cceE-EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc---CCCeE
Q 022590          167 YVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN---REGKI  240 (294)
Q Consensus       167 ~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~dg~i  240 (294)
                      .+.++.|+  ++.+ ++++.++.|++||+++++         ....+. +...+..++|+|++  .++++++   .++.|
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~---------~~~~~~-~~~~~~~~~~~~~g--~~l~~~~~~~~~~~v  226 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---------VIDTVK-VEAAPSGIAVNPEG--TKAYVTNVDKYFNTV  226 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE---------EEEEEE-CSSEEEEEEECTTS--SEEEEEEECSSCCEE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe---------EEEEEe-cCCCccceEECCCC--CEEEEEecCcCCCcE
Confidence            45778886  6566 677889999999998764         333333 34578899999998  4666666   68999


Q ss_pred             EEEeccCCCceeeeeccccccCCCeEEEEEccCCCEE-EEeccCCcEEEEecCC
Q 022590          241 FVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI-LSCCEDGAIWRWDAIP  293 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vw~~~~  293 (294)
                      ++||+.+++..  ..+.  .+ ..+.+++|+|++++| ++++.|+.|++||+++
T Consensus       227 ~~~d~~~~~~~--~~~~--~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          227 SMIDTGTNKIT--ARIP--VG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             EEEETTTTEEE--EEEE--CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEECCCCeEE--EEEe--cC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence            99999987533  3333  22 357899999999987 6778999999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.4e-31  Score=213.02  Aligned_cols=239  Identities=14%  Similarity=0.019  Sum_probs=190.0

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCCcEEEEEc
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNV   83 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~   83 (294)
                      ..|.+.|.+++|+  |+++ ++++++.|+.|++||+.+++.+..+..|...+.+++|+| +++.+ ++++.|+.|++||+
T Consensus       166 ~~~~~~v~~~~~~--~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~  241 (433)
T 3bws_A          166 KKKLGFVETISIP--EHNE-LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDR  241 (433)
T ss_dssp             HTTCCEEEEEEEG--GGTE-EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEET
T ss_pred             cccCCceeEEEEc--CCCE-EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEEC
Confidence            3678899999996  8888 999999999999999999999999989999999999999 66666 56668999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeee--------cCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG--------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~--------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      .+++.+..+.    +...+.+++|+| ++..+++++        .||.|++||+++..                      
T Consensus       242 ~~~~~~~~~~----~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~----------------------  294 (433)
T 3bws_A          242 KTKLEIRKTD----KIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEK----------------------  294 (433)
T ss_dssp             TTTEEEEECC----CCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTE----------------------
T ss_pred             CCCcEEEEec----CCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCc----------------------
Confidence            9998887776    456699999999 777788877        48899999998732                      


Q ss_pred             eceEEeecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          156 FPVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                       .. ....|...+.+++|+  ++ ++++++.++.|++||+++++         ....+. +...+..++|+|++  .+++
T Consensus       295 -~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~---------~~~~~~-~~~~~~~~~~s~dg--~~l~  360 (433)
T 3bws_A          295 -LI-DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK---------VQKSIP-VFDKPNTIALSPDG--KYLY  360 (433)
T ss_dssp             -EE-EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE---------EEEEEE-CSSSEEEEEECTTS--SEEE
T ss_pred             -EE-eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc---------EEEEec-CCCCCCeEEEcCCC--CEEE
Confidence             11 122345567778886  54 55677899999999998654         344444 45678999999998  4666


Q ss_pred             EEcC---------------CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEecCC
Q 022590          233 IGNR---------------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAIP  293 (294)
Q Consensus       233 ~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~~  293 (294)
                      +++.               ||.|++||+.+++...  .+.  . ...+.+++|+|+|++|++++ .|+.|++|+++.
T Consensus       361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~--~~~--~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE--FWE--A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE--EEE--C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             EEecCCCccccccccccccceEEEEEECCCCcEEE--Eec--C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence            6655               5799999998876333  332  1 35689999999999998876 499999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=4.8e-31  Score=211.24  Aligned_cols=237  Identities=11%  Similarity=0.060  Sum_probs=186.3

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccc-----eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-----SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      ..+.+++|+  |++. ++++++.++.|++||+.+++...     .+.+|...|.+++|+| ++.++++++.|+.|++||+
T Consensus       123 ~~~~~~~~s--~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~  198 (433)
T 3bws_A          123 FQPKSVRFI--DNTR-LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDL  198 (433)
T ss_dssp             SCBCCCEES--SSSE-EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEe--CCCe-EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEEC
Confidence            345577776  7665 88888899999999999988776     4567899999999998 8899999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceE-EeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      .+++.+..+.   .|...+.+++|+| ++..+ ++++.|+.|++||+++..                       ....+.
T Consensus       199 ~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~-----------------------~~~~~~  251 (433)
T 3bws_A          199 KTLAYKATVD---LTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKL-----------------------EIRKTD  251 (433)
T ss_dssp             TTCCEEEEEE---CSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTE-----------------------EEEECC
T ss_pred             CCceEEEEEc---CCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCc-----------------------EEEEec
Confidence            9999888887   5889999999999 66555 566689999999998732                       222222


Q ss_pred             cCCCceeeccee--cceEEEee--------CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          163 VHSNYVDCNRWL--GDFILSKS--------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      . ...+.+++|+  ++.+++++        .|+.|++||+++++         ..... .+...+..++|+|+++ .+++
T Consensus       252 ~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~---------~~~~~-~~~~~~~~~~~~~~g~-~l~~  319 (433)
T 3bws_A          252 K-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK---------LIDTI-GPPGNKRHIVSGNTEN-KIYV  319 (433)
T ss_dssp             C-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE---------EEEEE-EEEECEEEEEECSSTT-EEEE
T ss_pred             C-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc---------EEeec-cCCCCcceEEECCCCC-EEEE
Confidence            2 3457888886  67888877        48899999998664         22222 2234678899999985 3667


Q ss_pred             EEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc---------------CCcEEEEecCC
Q 022590          233 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE---------------DGAIWRWDAIP  293 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~---------------dg~i~vw~~~~  293 (294)
                      +++.++.|++||+.+++..  ..+   .+...+.+++|+|+|++|++++.               ||.|++||+++
T Consensus       320 ~~~~~~~v~v~d~~~~~~~--~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~  390 (433)
T 3bws_A          320 SDMCCSKIEVYDLKEKKVQ--KSI---PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT  390 (433)
T ss_dssp             EETTTTEEEEEETTTTEEE--EEE---ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT
T ss_pred             EecCCCEEEEEECCCCcEE--EEe---cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCC
Confidence            7799999999999987533  233   23467999999999999888776               57999999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.3e-31  Score=211.48  Aligned_cols=227  Identities=13%  Similarity=0.042  Sum_probs=155.9

Q ss_pred             cccccCceeEEEEEeec------CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCC
Q 022590            3 YVDQKEESFYTVSWACN------VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE   76 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~------~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg   76 (294)
                      .+..|.+.|++++|++.      .+++ +||+|+.|++|+|||+.++.....+..|..+|.+++|+|.+..+|++|+.||
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~  209 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNG  209 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             ccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence            35689999999999841      2677 9999999999999999988888888889999999999995556899999999


Q ss_pred             cEEEEEcCCCceEEEeec----------------------cCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccc
Q 022590           77 SVRLWNVQTGICILIFAG----------------------AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT  134 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~----------------------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  134 (294)
                      +|++||+.+++.......                      ..+|...+.++.|++.++..+++++.|+++++||+.....
T Consensus       210 ~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~  289 (393)
T 4gq1_A          210 NIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND  289 (393)
T ss_dssp             EEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred             EEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC
Confidence            999999988765432211                      1268888999999854889999999999999999987433


Q ss_pred             ccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee
Q 022590          135 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP  211 (294)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  211 (294)
                      .........    ................+...+..+.+.   +.++++|+.||.|++||+.+++         ......
T Consensus       290 ~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~---------~~~~~~  356 (393)
T 4gq1_A          290 YNEISDSTM----KLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD---------SNSIPI  356 (393)
T ss_dssp             ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT---------CCEEEE
T ss_pred             CceEeeecC----ccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc---------EEEEec
Confidence            221110000    000000011111222222222222222   4467788899999999998775         334455


Q ss_pred             cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          212 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      .+..+|.+++|+|++  ++||+++.+| +.+|.+.
T Consensus       357 ~~~~~V~svafspdG--~~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          357 QLGMPIVDFCWHQDG--SHLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             ECSSCEEEEEECTTS--SEEEEEESSE-EEEEEEG
T ss_pred             CCCCcEEEEEEcCCC--CEEEEEeCCC-eEEEEEe
Confidence            677889999999999  6899998766 6666654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.98  E-value=1.8e-29  Score=199.47  Aligned_cols=222  Identities=13%  Similarity=0.057  Sum_probs=175.5

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  103 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  103 (294)
                      ++++++.|+.|++||+.+++.+..+..|. .+.+++|+| +++++ ++++.|++|++||+.+++.+..+.    +...+.
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~----~~~~v~   77 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVP----AGSSPQ   77 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE----CSSSEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEE----CCCCcc
Confidence            78899999999999999999988888765 589999999 66655 777799999999999999988887    444899


Q ss_pred             EEEEecCCCceE-EeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceE-E
Q 022590          104 SVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-L  179 (294)
Q Consensus       104 ~l~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~  179 (294)
                      +++|+| ++.+| ++++.++.|++||+.+.                       .....+. +...+.+++|+  ++.+ +
T Consensus        78 ~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~-----------------------~~~~~~~-~~~~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A           78 GVAVSP-DGKQVYVTNMASSTLSVIDTTSN-----------------------TVAGTVK-TGKSPLGLALSPDGKKLYV  132 (391)
T ss_dssp             EEEECT-TSSEEEEEETTTTEEEEEETTTT-----------------------EEEEEEE-CSSSEEEEEECTTSSEEEE
T ss_pred             ceEECC-CCCEEEEEECCCCEEEEEECCCC-----------------------eEEEEEe-CCCCcceEEECCCCCEEEE
Confidence            999999 66655 55667799999999873                       2233333 34467888887  5666 6


Q ss_pred             EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccc
Q 022590          180 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA  259 (294)
Q Consensus       180 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  259 (294)
                      +++.++.|++||+++++         ....+..+ ..+..++|+|+++ .++++++.++.|++||+++.+..  ..+.  
T Consensus       133 ~~~~~~~v~~~d~~~~~---------~~~~~~~~-~~~~~~~~~~dg~-~l~~~~~~~~~v~~~d~~~~~~~--~~~~--  197 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKA---------VINTVSVG-RSPKGIAVTPDGT-KVYVANFDSMSISVIDTVTNSVI--DTVK--  197 (391)
T ss_dssp             EETTTTEEEEEETTTTE---------EEEEEECC-SSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEE--EEEE--
T ss_pred             EeCCCCEEEEEECCCCc---------EEEEEecC-CCcceEEECCCCC-EEEEEeCCCCEEEEEECCCCeEE--EEEe--
Confidence            88889999999998664         44445443 4578999999995 34477889999999999987533  2232  


Q ss_pred             ccCCCeEEEEEccCCCEEEEec---cCCcEEEEecCC
Q 022590          260 QSKSPIRQTAMSYDGSTILSCC---EDGAIWRWDAIP  293 (294)
Q Consensus       260 ~~~~~v~~~~~s~~~~~l~s~~---~dg~i~vw~~~~  293 (294)
                       +...+.+++|+|++++|++++   .++.|++||+++
T Consensus       198 -~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~  233 (391)
T 1l0q_A          198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (391)
T ss_dssp             -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             -cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence             335789999999999999887   689999999864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.96  E-value=2.6e-26  Score=182.30  Aligned_cols=222  Identities=10%  Similarity=0.001  Sum_probs=169.1

Q ss_pred             CceEEEEeecC------CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCC---cEEEEEcCCCceEEEe
Q 022590           22 GIPFLVAGGIN------GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE---SVRLWNVQTGICILIF   92 (294)
Q Consensus        22 ~~~~l~~~~~d------g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~   92 (294)
                      +. .++.++.+      +.|++||++ +...+.+..|...|.+++|+| +++.|++++.++   .|++||+.+++... +
T Consensus       143 ~~-~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~-l  218 (415)
T 2hqs_A          143 RT-RIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQ-V  218 (415)
T ss_dssp             TC-EEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEE-E
T ss_pred             CC-EEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEE-e
Confidence            44 56665554      799999997 455678888999999999999 889999999875   99999999988764 4


Q ss_pred             eccCCCCCceeEEEEecCCCceEE-eeecCCc--EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCcee
Q 022590           93 AGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  169 (294)
Q Consensus        93 ~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (294)
                      .   .|...+.+++|+| ++..|+ +++.|+.  |++||+.+..                        ...+..|...+.
T Consensus       219 ~---~~~~~~~~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~------------------------~~~l~~~~~~~~  270 (415)
T 2hqs_A          219 A---SFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQ------------------------IRQVTDGRSNNT  270 (415)
T ss_dssp             E---CCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCC------------------------EEECCCCSSCEE
T ss_pred             e---cCCCcccCEEEcC-CCCEEEEEEecCCCceEEEEECCCCC------------------------EEeCcCCCCccc
Confidence            4   4788999999999 777666 6666665  8999988621                        234556778888


Q ss_pred             eccee--cceEEEeeC-CC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC---CeEE
Q 022590          170 CNRWL--GDFILSKSV-DN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE---GKIF  241 (294)
Q Consensus       170 ~~~~~--~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---g~i~  241 (294)
                      ++.|+  +++|+.++. ++  .|.+||+.+++          ...+..+...+..++|+|+++  +|++++.+   +.|+
T Consensus       271 ~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~----------~~~l~~~~~~~~~~~~spdG~--~l~~~~~~~g~~~i~  338 (415)
T 2hqs_A          271 EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA----------PQRITWEGSQNQDADVSSDGK--FMVMVSSNGGQQHIA  338 (415)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTSSC----------CEECCCSSSEEEEEEECTTSS--EEEEEEECSSCEEEE
T ss_pred             ceEECCCCCEEEEEECCCCCcEEEEEECCCCC----------EEEEecCCCcccCeEECCCCC--EEEEEECcCCceEEE
Confidence            99997  777887776 44  68888987654          122333455688899999994  67666553   5899


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC---cEEEEecCC
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG---AIWRWDAIP  293 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg---~i~vw~~~~  293 (294)
                      +||+.+++.   ..+.  .+. .+.+++|+|+|++|++++.++   .|++||+..
T Consensus       339 ~~d~~~~~~---~~l~--~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          339 KQDLATGGV---QVLS--STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             EEETTTCCE---EECC--CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             EEECCCCCE---EEec--CCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence            999998763   2233  232 799999999999999988877   799999753

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=2.7e-25  Score=172.43  Aligned_cols=247  Identities=11%  Similarity=0.069  Sum_probs=165.5

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecC-CeEEEEEcC--Ccc--ccceecccCcceEEEEeCCCCCceEEEee-CCCcEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGIN-GIIRVIDVS--NEK--LHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVR   79 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~d-g~i~iw~~~--~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~   79 (294)
                      .+...+.+++|+  |+|+ +|++++.+ +.|.+|+++  +++  .+..+..+. .+..++|+| ++++|++++ .++.|.
T Consensus        35 ~~~~~~~~~~~s--pdg~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~  109 (343)
T 1ri6_A           35 DVPGQVQPMVVS--PDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVS  109 (343)
T ss_dssp             ECSSCCCCEEEC--TTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEE
T ss_pred             ecCCCCceEEEC--CCCC-EEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEE
Confidence            355677888887  9998 77777776 999999997  444  334444443 789999999 777666555 588999


Q ss_pred             EEEcC---CCceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCCcEEEEeccc-cccccccceeecCCCCCCCCcee
Q 022590           80 LWNVQ---TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYV  154 (294)
Q Consensus        80 vwd~~---~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~  154 (294)
                      +||+.   ..+....+.    ....+.+++|+| ++.++++++ .++.|++||+.. ....                   
T Consensus       110 ~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~-------------------  165 (343)
T 1ri6_A          110 VTRLEDGLPVGVVDVVE----GLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLV-------------------  165 (343)
T ss_dssp             EEEEETTEEEEEEEEEC----CCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEE-------------------
T ss_pred             EEECCCCcccccccccc----CCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCcee-------------------
Confidence            99994   333444443    344689999999 776666666 899999999976 2110                   


Q ss_pred             eeceE--Eee-cCCCceeeccee--cceEEE-eeCCCeEEEecCCCCCCCCCCCCceeeeeee---cC---CCCeeEEEE
Q 022590          155 QFPVF--IAS-VHSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VP---ECDIWFIKF  222 (294)
Q Consensus       155 ~~~~~--~~~-~~~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~---~~~i~~~~~  222 (294)
                        ...  ... .....+..+.|+  ++++++ +..++.|.+||+.....     .........   ..   ...+..++|
T Consensus       166 --~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~i~~  238 (343)
T 1ri6_A          166 --AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG-----NIECVQTLDMMPENFSDTRWAADIHI  238 (343)
T ss_dssp             --EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS-----CCEEEEEEECSCTTCCSCCCEEEEEE
T ss_pred             --eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC-----cEEEEeeccccCccccccCCccceEE
Confidence              000  111 123456677776  665654 45789999999964211     111122222   11   235668999


Q ss_pred             cccCCcceEEEEcCCCeEEEEeccC--CCceeeeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEecC
Q 022590          223 SCDFHYNAAAIGNREGKIFVWELQS--SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAI  292 (294)
Q Consensus       223 ~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~  292 (294)
                      +|+++ .+++++..++.|.+||+..  ++......+.  .+ ..+..++|+|+|++|++++ .++.|.+|++.
T Consensus       239 s~dg~-~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          239 TPDGR-HLYACDRTASLITVFSVSEDGSVLSKEGFQP--TE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             CTTSS-EEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             CCCCC-EEEEEecCCCEEEEEEEcCCCCceEEeeeec--CC-CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            99985 2444666899999999983  3323333333  22 2388999999999888877 68999999664

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.95  E-value=3.5e-26  Score=182.16  Aligned_cols=244  Identities=12%  Similarity=0.136  Sum_probs=166.0

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc----------cc-----eecccCcceEEEEeCCCCCceEE-
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL----------HK-----SFVGHGDSINEIRTQPLKPSLVV-   70 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~----------~~-----~~~~h~~~v~~~~~~~~~~~~l~-   70 (294)
                      ....++.++++  +++. ++++++.++ +++|+......          ..     ....+...|++++|+| ++++|+ 
T Consensus        35 ~~~~~n~lavs--~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav  109 (434)
T 2oit_A           35 PKERSSLLAVS--NKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSA  109 (434)
T ss_dssp             CCSCCBCEEEE--TTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEE
T ss_pred             CCCCccEEEEe--cCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEE
Confidence            34568889998  7777 899998887 89987532110          00     0112556799999999 888888 


Q ss_pred             ---EeeCCCcEEEEEcCCC--------ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc
Q 022590           71 ---SASKDESVRLWNVQTG--------ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS  139 (294)
Q Consensus        71 ---s~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~  139 (294)
                         +|+.|++|++||+.++        +.+..+....+|...|.+++|+|.++.+|++++.||+|++||+++.       
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-------  182 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-------  182 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-------
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-------
Confidence               8899999999998765        3333344444799999999999955889999999999999999972       


Q ss_pred             eeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC----
Q 022590          140 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP----  213 (294)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~----  213 (294)
                                      ........|...|.+++|+  +++|++|+.||.|++||++ ++         ....+..+    
T Consensus       183 ----------------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~---------~~~~~~~~~~~~  236 (434)
T 2oit_A          183 ----------------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ---------EKKVIPCPPFYE  236 (434)
T ss_dssp             ----------------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC---------EEEEECCCTTCC
T ss_pred             ----------------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc---------ccccccCCcccC
Confidence                            2234455688999999997  8899999999999999998 32         12222221    


Q ss_pred             ---CCCeeEEEEcccCCcceEEE-EcCCC------eEEEEeccCCCc---eeeeeccc-----cccCCCeEEEEEccCCC
Q 022590          214 ---ECDIWFIKFSCDFHYNAAAI-GNREG------KIFVWELQSSPP---VLIARLSH-----AQSKSPIRQTAMSYDGS  275 (294)
Q Consensus       214 ---~~~i~~~~~~~~~~~~~l~~-~~~dg------~i~i~d~~~~~~---~~~~~~~~-----~~~~~~v~~~~~s~~~~  275 (294)
                         ...+.++.|+++.  .++++ ...+|      .+++|++.+.+.   .....+..     ...+.+-..+..-++.+
T Consensus       237 ~~~~~~v~~v~w~~~~--~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~  314 (434)
T 2oit_A          237 SDHPVRVLDVLWIGTY--VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWD  314 (434)
T ss_dssp             TTSCEEEEEEEEEETT--EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGT
T ss_pred             CCCceeEEEEEEecCc--eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCC
Confidence               2368889999876  34433 33443      389999986531   11111111     12233333444446767


Q ss_pred             EEEEec-cCCcEEEEe
Q 022590          276 TILSCC-EDGAIWRWD  290 (294)
Q Consensus       276 ~l~s~~-~dg~i~vw~  290 (294)
                      ++++++ ..+.|.|..
T Consensus       315 l~~v~s~~s~dv~vl~  330 (434)
T 2oit_A          315 LVLAASAASTEVSILA  330 (434)
T ss_dssp             EEEEEETTCSBCEEEE
T ss_pred             EEEEecCCCCceeEEE
Confidence            666554 344455554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=3.1e-26  Score=173.93  Aligned_cols=235  Identities=14%  Similarity=0.144  Sum_probs=171.5

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-ccccceeccc-CcceEEEEeCCCCCceEEEee--CCCcEEE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGH-GDSINEIRTQPLKPSLVVSAS--KDESVRL   80 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~--~dg~i~v   80 (294)
                      ..|.+.|.+++|+  |+|+ +|++++ ++.|++||+.+ ++.......+ ...+.+++|+| ++++|++++  .++...|
T Consensus        38 ~~~~~~v~~~~~s--pdg~-~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l  112 (297)
T 2ojh_A           38 WQTPELFEAPNWS--PDGK-YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAI  112 (297)
T ss_dssp             EEESSCCEEEEEC--TTSS-EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEE
T ss_pred             ccCCcceEeeEEC--CCCC-EEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceE
Confidence            3578889999998  9999 888876 78999999998 8777666665 47889999999 888999888  3455666


Q ss_pred             EEc--CCCceEEEeeccCCCCCceeEEEEecCCCceEE-eeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           81 WNV--QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        81 wd~--~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      |.+  .+++ ...+.    +...+..++|+| ++..|+ ++..++.+++|+++...                      ..
T Consensus       113 ~~~~~~~~~-~~~~~----~~~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~----------------------~~  164 (297)
T 2ojh_A          113 YLLPSTGGT-PRLMT----KNLPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDS----------------------GV  164 (297)
T ss_dssp             EEEETTCCC-CEECC----SSSSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTT----------------------CC
T ss_pred             EEEECCCCc-eEEee----cCCCccceEECC-CCCEEEEEECCCCceEEEEEECCC----------------------Cc
Confidence            655  4444 33343    334589999999 666555 78889999999976411                      11


Q ss_pred             eEEeecCCCceeeccee--cceEEEee-CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          158 VFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                      ...+..+...+.++.|+  +++++.++ .++.+++|++.....        ....+..+...+..+.|+|++  .+|+++
T Consensus       165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~s~dg--~~l~~~  234 (297)
T 2ojh_A          165 ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS--------SVERITDSAYGDWFPHPSPSG--DKVVFV  234 (297)
T ss_dssp             EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS--------CEEECCCCSEEEEEEEECTTS--SEEEEE
T ss_pred             ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC--------CcEEEecCCcccCCeEECCCC--CEEEEE
Confidence            23445567788888886  66676655 588999998863221        234455555678889999999  466666


Q ss_pred             cCC-----------CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590          235 NRE-----------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       235 ~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                      +.+           +.|++||+.+++........  .|...+..++|+|++++|++++.+.
T Consensus       235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF--GGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE--ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EcCCCCCcccccCceEEEEEecCCCCceeeeccC--CCCcccccceECCCCCEEEEEEecc
Confidence            554           56999999988654444433  5567899999999999999887654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=4.8e-25  Score=175.01  Aligned_cols=220  Identities=13%  Similarity=0.057  Sum_probs=166.0

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCC---eEEEEEcCCccccceecccCcceEEEEeCCCCCceEE-EeeCCCc--
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGING---IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVV-SASKDES--   77 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~~~dg~--   77 (294)
                      +..|.+.|.+++|+  |+|+ +|++++.++   .|++||+.+++.. .+..|...+.+++|+| +++.|+ +++.++.  
T Consensus       174 l~~~~~~v~~~~~S--pdg~-~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp-dg~~la~~~~~~g~~~  248 (415)
T 2hqs_A          174 VHRSPQPLMSPAWS--PDGS-KLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP-DGSKLAFALSKTGSLN  248 (415)
T ss_dssp             EEEESSCEEEEEEC--TTSS-EEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT-TSSEEEEEECTTSSCE
T ss_pred             EeCCCCcceeeEEc--CCCC-EEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC-CCCEEEEEEecCCCce
Confidence            34688899999998  9999 899998875   9999999988764 5667888999999999 777666 6666665  


Q ss_pred             EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec-CC--cEEEEeccccccccccceeecCCCCCCCCcee
Q 022590           78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DN--TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  154 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (294)
                      |.+||+.+++.. .+.   .|...+.+++|+| ++..|++++. ++  .|.+||+....                     
T Consensus       249 i~~~d~~~~~~~-~l~---~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~---------------------  302 (415)
T 2hqs_A          249 LYVMDLASGQIR-QVT---DGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGA---------------------  302 (415)
T ss_dssp             EEEEETTTCCEE-ECC---CCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSC---------------------
T ss_pred             EEEEECCCCCEE-eCc---CCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCC---------------------
Confidence            999999887763 444   5888999999999 7777777765 45  56777877621                     


Q ss_pred             eeceEEeecCCCceeeccee--cceEEEeeCC---CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          155 QFPVFIASVHSNYVDCNRWL--GDFILSKSVD---NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       155 ~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                         ...+..+...+..+.|+  +++|++++.+   ..|.+||+.+++.          ..+..+. .+..++|+|++  .
T Consensus       303 ---~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~----------~~l~~~~-~~~~~~~spdg--~  366 (415)
T 2hqs_A          303 ---PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----------QVLSSTF-LDETPSLAPNG--T  366 (415)
T ss_dssp             ---CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE----------EECCCSS-SCEEEEECTTS--S
T ss_pred             ---EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE----------EEecCCC-CcCCeEEcCCC--C
Confidence               12233456677788886  7888887764   5899999987641          2233333 78899999999  4


Q ss_pred             eEEEEcCCC---eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC
Q 022590          230 AAAIGNREG---KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS  275 (294)
Q Consensus       230 ~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  275 (294)
                      +|++++.++   .|++||+....   ...+.  .+.+.|.+++|+|...
T Consensus       367 ~l~~~s~~~~~~~l~~~d~~g~~---~~~l~--~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          367 MVIYSSSQGMGSVLNLVSTDGRF---KARLP--ATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCC---EEECC--CSSSEEEEEEECCCCC
T ss_pred             EEEEEEcCCCccEEEEEECCCCc---EEEee--CCCCCCcCCccccccc
Confidence            677776666   79999997653   33444  6678899999999753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=9.6e-25  Score=168.58  Aligned_cols=250  Identities=10%  Similarity=0.057  Sum_probs=170.5

Q ss_pred             cCceeEEEEEeecCCCceEEEEe-ecCCeEEEEEcCCccc-cceecccCcceEEEEeCCCCCceEEEeeCCC---cEEEE
Q 022590            7 KEESFYTVSWACNVDGIPFLVAG-GINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDE---SVRLW   81 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~i~vw   81 (294)
                      +...+ .++|+  |+|+ +++++ ..++.|.+||..+++. ...+..+..+..+++|+| ++++++++..++   .|.+|
T Consensus        39 ~~~~~-~~~~s--~dg~-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~  113 (331)
T 3u4y_A           39 GYDFV-DTAIT--SDCS-NVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSY  113 (331)
T ss_dssp             CCCEE-EEEEC--SSSC-EEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEE
T ss_pred             cCCcc-eEEEc--CCCC-EEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEE
Confidence            34455 77776  9998 55554 4589999999999987 777777777766699999 888888655553   89999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCc-eEEeeecCCc-EEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNT-VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      |+.+++.+..+.    ....+.+++|+| +++ ++++...++. +.+|++.......                  ... .
T Consensus       114 d~~~~~~~~~~~----~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~------------------~~~-~  169 (331)
T 3u4y_A          114 SFLKNKFISTIP----IPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLF------------------DTG-Q  169 (331)
T ss_dssp             ETTTTEEEEEEE----CCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEE------------------EEE-E
T ss_pred             ECCCCCeEEEEE----CCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEe------------------ecC-C
Confidence            999999888776    445679999999 665 4555566688 9999988521100                  000 1


Q ss_pred             EeecCCCceeeccee--cceE-EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          160 IASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      ...........+.|+  ++++ +++..++.|.+||+.+++.      ...+..+.. ...+..++|+|+++ .++++...
T Consensus       170 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~------~~~~~~~~~-~~~~~~~~~spdg~-~l~v~~~~  241 (331)
T 3u4y_A          170 EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN------ITLLNAVGT-NNLPGTIVVSRDGS-TVYVLTES  241 (331)
T ss_dssp             EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS------CEEEEEEEC-SSCCCCEEECTTSS-EEEEECSS
T ss_pred             ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc------cceeeeccC-CCCCceEEECCCCC-EEEEEEcC
Confidence            111233446777776  6655 4555689999999987652      112444443 35567899999995 23344456


Q ss_pred             CCeEEEEeccCCCceeeeecccc-----ccCCCeEEEEEccCCCEEEEe-ccCCcEEEEecCC
Q 022590          237 EGKIFVWELQSSPPVLIARLSHA-----QSKSPIRQTAMSYDGSTILSC-CEDGAIWRWDAIP  293 (294)
Q Consensus       237 dg~i~i~d~~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vw~~~~  293 (294)
                      ++.|.+||+.+++......+...     ........++|+|+|++|+++ ..++.|.+||+..
T Consensus       242 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          242 TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence            78899999998764333322211     111223568999999988655 4567999999875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=7.8e-25  Score=178.91  Aligned_cols=245  Identities=12%  Similarity=0.056  Sum_probs=172.4

Q ss_pred             ecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc--CCCceEEEeecc
Q 022590           18 CNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV--QTGICILIFAGA   95 (294)
Q Consensus        18 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~--~~~~~~~~~~~~   95 (294)
                      ++|++. ++++++.|++|.+||..+++.+.++..+.. +..++|+| ++++|++++.|++|++||+  .+++.+..+.  
T Consensus       145 ~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--  219 (543)
T 1nir_A          145 LDLPNL-FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--  219 (543)
T ss_dssp             CCGGGE-EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE--
T ss_pred             cCCCCE-EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEe--
Confidence            458887 899999999999999999999998884333 89999999 9999999999999999999  8888888877  


Q ss_pred             CCCCCceeEEEEec----CCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC-Ccee
Q 022590           96 GGHRNEVLSVDFHP----SDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-NYVD  169 (294)
Q Consensus        96 ~~~~~~v~~l~~~~----~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~  169 (294)
                        +...+..++|+|    ++ +++++++ .+++|.+||..+.+........             .........|. ..+.
T Consensus       220 --~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~-------------g~~~~~~~~~~~~~v~  283 (543)
T 1nir_A          220 --IGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVSTR-------------GMTVDTQTYHPEPRVA  283 (543)
T ss_dssp             --CCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEECC-------------EECSSSCCEESCCCEE
T ss_pred             --cCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeeccc-------------CcccCccccccCCceE
Confidence              556789999998    55 4566655 6899999998874321110000             00000000122 2567


Q ss_pred             eccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          170 CNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       170 ~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      .+.++   +.++++...++.|.+||..+.+..       .+..+. +...+..+.|+|+++ .+++++..++.|.+||+.
T Consensus       284 ~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l-------~~~~i~-~~~~~~~~~~spdg~-~l~va~~~~~~v~v~D~~  354 (543)
T 1nir_A          284 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNL-------TVTSIG-AAPFLHDGGWDSSHR-YFMTAANNSNKVAVIDSK  354 (543)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEECTTSSSC-------EEEEEE-CCSSCCCEEECTTSC-EEEEEEGGGTEEEEEETT
T ss_pred             EEEECCCCCEEEEEECCCCeEEEEEecCCCcc-------eeEEec-cCcCccCceECCCCC-EEEEEecCCCeEEEEECC
Confidence            77775   456777788999999999876421       122333 345677899999995 244556678999999999


Q ss_pred             CCCceeeeeccccccCCCeEEEEEccC-CCEEEEec-cCCcEEEEecCC
Q 022590          247 SSPPVLIARLSHAQSKSPIRQTAMSYD-GSTILSCC-EDGAIWRWDAIP  293 (294)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~-~dg~i~vw~~~~  293 (294)
                      +++...........|.+....+ ++|+ +.+++++. .|++|.+||+.+
T Consensus       355 tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~  402 (543)
T 1nir_A          355 DRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP  402 (543)
T ss_dssp             TTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence            9864443332222344433333 4676 66777775 689999999875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=2e-24  Score=176.52  Aligned_cols=251  Identities=12%  Similarity=0.069  Sum_probs=182.4

Q ss_pred             CceeEEEEEeecC----CCceEEEEee-cCCeEEEEEcCCccccceecc----------cCc-ceEEEEeCCCCCceEEE
Q 022590            8 EESFYTVSWACNV----DGIPFLVAGG-INGIIRVIDVSNEKLHKSFVG----------HGD-SINEIRTQPLKPSLVVS   71 (294)
Q Consensus         8 ~~~v~~~~~~~~~----~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~----------h~~-~v~~~~~~~~~~~~l~s   71 (294)
                      ...+..++|+  |    +|+ ++++++ .+++|.+||..++++++++..          |.. .+.++.++|++..++++
T Consensus       221 g~~p~~va~s--p~~~~dg~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs  297 (543)
T 1nir_A          221 GIEARSVESS--KFKGYEDR-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  297 (543)
T ss_dssp             CSEEEEEEEC--CSTTCTTT-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             CCCcceEEeC--CCcCCCCC-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence            3456777876  8    999 777777 589999999999998887764          223 78999999966677888


Q ss_pred             eeCCCcEEEEEcCCCceEE--EeeccCCCCCceeEEEEecCCCceEE-eeecCCcEEEEeccccccccccceeecCCCCC
Q 022590           72 ASKDESVRLWNVQTGICIL--IFAGAGGHRNEVLSVDFHPSDIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        72 ~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v~~l~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                      ...+++|.+||+.+.+.+.  .+.    +...+.++.|+| ++++|+ ++..+++|.+||+.+++.              
T Consensus       298 ~~~~g~i~vvd~~~~~~l~~~~i~----~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l--------------  358 (543)
T 1nir_A          298 VKETGKVLLVNYKDIDNLTVTSIG----AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRL--------------  358 (543)
T ss_dssp             ETTTTEEEEEECTTSSSCEEEEEE----CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEE--------------
T ss_pred             ECCCCeEEEEEecCCCcceeEEec----cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeE--------------
Confidence            8899999999998876554  333    666788999999 776555 555689999999998432              


Q ss_pred             CCCceeeeceEEee----cCCCceeecce-e-cceEEEee-CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEE
Q 022590          149 FPTKYVQFPVFIAS----VHSNYVDCNRW-L-GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK  221 (294)
Q Consensus       149 ~~~~~~~~~~~~~~----~~~~~i~~~~~-~-~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  221 (294)
                               ...+.    .|......+.. + +..++++. .|++|.+||+.+....  ....+.++.++.+...+..++
T Consensus       359 ---------~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~--~~~~~~v~~l~~~g~~~~~v~  427 (543)
T 1nir_A          359 ---------SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP--QYAWKKVAELQGQGGGSLFIK  427 (543)
T ss_dssp             ---------EEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT--TTBTSEEEEEECSCSCCCCEE
T ss_pred             ---------EEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCc--hhcCeEEEEEEcCCCCceEEE
Confidence                     22222    24433222211 2 55666665 5899999999873211  112457888888888888999


Q ss_pred             EcccCCcceEEEEc-------CCCeEEEEeccCCCce-eeeecc----ccccCCCeEEEEEccCCCEEEEe-----ccCC
Q 022590          222 FSCDFHYNAAAIGN-------REGKIFVWELQSSPPV-LIARLS----HAQSKSPIRQTAMSYDGSTILSC-----CEDG  284 (294)
Q Consensus       222 ~~~~~~~~~l~~~~-------~dg~i~i~d~~~~~~~-~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~-----~~dg  284 (294)
                      ++|++  .+|++++       .++.|.+||+.+.+.. ....+.    ...+...+..++|+|+|+.|+.+     +.|+
T Consensus       428 ~~pdg--~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~  505 (543)
T 1nir_A          428 THPKS--SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSS  505 (543)
T ss_dssp             CCTTC--CEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCC
T ss_pred             cCCCC--CcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCC
Confidence            99999  5788876       2679999999998754 221111    12445789999999999998866     3479


Q ss_pred             cEEEEecCC
Q 022590          285 AIWRWDAIP  293 (294)
Q Consensus       285 ~i~vw~~~~  293 (294)
                      .|.|||.++
T Consensus       506 ~i~v~D~~t  514 (543)
T 1nir_A          506 ALVVVDDKT  514 (543)
T ss_dssp             EEEEEETTT
T ss_pred             eEEEEECCC
Confidence            999999875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=4.7e-25  Score=187.90  Aligned_cols=250  Identities=9%  Similarity=0.012  Sum_probs=173.8

Q ss_pred             CceeEEEEEeecCCCceEEEEeec-CC-----eEEEEEcCCccccceecccCc------------------------ceE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGI-NG-----IIRVIDVSNEKLHKSFVGHGD------------------------SIN   57 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~-dg-----~i~iw~~~~~~~~~~~~~h~~------------------------~v~   57 (294)
                      ...+.+++|+  |||+ +|++++. |+     .|++||+.+++....+..+..                        .|.
T Consensus        36 ~~~~~~~~~S--pdG~-~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVA--PDGS-RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEEC--TTSS-EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEe--cCCC-EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            4578999998  9999 8999888 88     999999999887666654432                        389


Q ss_pred             EEEeCCCCCceEEEeeCCCcEEEEEcCCCc--eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccc
Q 022590           58 EIRTQPLKPSLVVSASKDESVRLWNVQTGI--CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTY  135 (294)
Q Consensus        58 ~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~  135 (294)
                      +++|+| ++++|++++. +.|.+||+.++.  ....+.   .|...+.+++|+| +++.|+.++ ++.|++||+.++...
T Consensus       113 ~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~---~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          113 DYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLT---HGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQM  185 (741)
T ss_dssp             CCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCC---CSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred             eeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcc---cCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEE
Confidence            999999 8898988886 999999998872  333344   4778899999999 888888887 569999999873221


Q ss_pred             cccceeecCCCCCCCCceeeeceEEeecC--------CCceeeccee--cceEEEeeCCC--------------------
Q 022590          136 VEKSFTWTDLPSKFPTKYVQFPVFIASVH--------SNYVDCNRWL--GDFILSKSVDN--------------------  185 (294)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~i~~~~~~--~~~l~~~~~d~--------------------  185 (294)
                      ......             ...  ...++        ...+..+.|+  |++|++++.|+                    
T Consensus       186 ~~~~~~-------------~~~--~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~  250 (741)
T 2ecf_A          186 QLTADG-------------STT--IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE  250 (741)
T ss_dssp             ECCCCC-------------CSS--EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred             EeccCC-------------ccc--eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence            100000             000  00000        1124667776  78888887665                    


Q ss_pred             -------------eEEEecCCC-CCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc-----CCCeEEEEecc
Q 022590          186 -------------EIVLWEPKM-KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-----REGKIFVWELQ  246 (294)
Q Consensus       186 -------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-----~dg~i~i~d~~  246 (294)
                                   .|.+||+.+ ++.       ..+.....+...+..++| |+++  .|+++.     .+..|++||+.
T Consensus       251 ~~~~~~g~~~~~~~l~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~-pDg~--~l~~~~~~~~~~~~~i~~~d~~  320 (741)
T 2ecf_A          251 QRYPAAGDANVQVKLGVISPAEQAQT-------QWIDLGKEQDIYLARVNW-RDPQ--HLSFQRQSRDQKKLDLVEVTLA  320 (741)
T ss_dssp             EECCBTTSCCCEEEEEEECSSTTCCC-------EEECCCSCSSEEEEEEEE-EETT--EEEEEEEETTSSEEEEEEEETT
T ss_pred             eecCCCCCCCCeeEEEEEECCCCCce-------EEecCCCCcceEEEEEEe-CCCC--EEEEEEecccCCeEEEEEEECC
Confidence                         788999886 542       011111134566889999 9995  566543     36789999999


Q ss_pred             CCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          247 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +++...............+..++|+|||+++++++.||.++||.+.
T Consensus       321 ~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          321 SNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             TCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             CCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            8874433322111111145689999999999999999988888764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=1.9e-23  Score=162.62  Aligned_cols=241  Identities=9%  Similarity=0.037  Sum_probs=174.1

Q ss_pred             CceeEEEEEeecCCCceEEEEeec-------CCeEEEEEcCCccccceecccCcceEEEEeCCCCCc-eEEEeeCCCcEE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGI-------NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVR   79 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~   79 (294)
                      ...+..++|+  |+|+ ++++++.       ++.|.+||..+++....+.. ...+..++|+| +++ ++++...++.|.
T Consensus        40 ~~~~~~~~~s--~dg~-~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~v~~~~~~~v~  114 (353)
T 3vgz_A           40 GKGAYEMAYS--QQEN-ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINN-TTQTLWFGNTVNSAVT  114 (353)
T ss_dssp             ESSEEEEEEE--TTTT-EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEET-TTTEEEEEETTTTEEE
T ss_pred             ccCccceEEC--CCCC-EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECC-CCCEEEEEecCCCEEE
Confidence            3557788887  8998 6666663       57899999999988887764 34578899999 666 556666689999


Q ss_pred             EEEcCCCceEEEeeccCCCC------CceeEEEEecCCCceEEeee--cCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           80 LWNVQTGICILIFAGAGGHR------NEVLSVDFHPSDIYRIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~------~~v~~l~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      +||..+++.+..+....+..      ..+.+++|+| ++..+++++  .++.|.+||+.+.                   
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~-------------------  174 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNI-------------------  174 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTT-------------------
T ss_pred             EEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCC-------------------
Confidence            99999999888776311110      1278999999 666565554  4789999999873                   


Q ss_pred             ceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec----CCCCeeEEEEccc
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----PECDIWFIKFSCD  225 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~  225 (294)
                          .....+..+...+..+.|+  ++++++++.++.|.+||+.+++         .......    +...+..++|+|+
T Consensus       175 ----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~s~d  241 (353)
T 3vgz_A          175 ----KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK---------ILSRKKLLDDGKEHFFINISLDTA  241 (353)
T ss_dssp             ----EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE---------EEEEEECCCSSSCCCEEEEEEETT
T ss_pred             ----ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe---------EEEEEEcCCCCCCcccceEEECCC
Confidence                2233333344557778886  7889998999999999998764         3333333    3456778999999


Q ss_pred             CCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe-ccCCcEEEEecCC
Q 022590          226 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRWDAIP  293 (294)
Q Consensus       226 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vw~~~~  293 (294)
                      ++ .++++...++.|.+||+.+++........     . ...++|+|+|++++.+ ..++.|.+||+.+
T Consensus       242 g~-~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-----~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          242 RQ-RAFITDSKAAEVLVVDTRNGNILAKVAAP-----E-SLAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             TT-EEEEEESSSSEEEEEETTTCCEEEEEECS-----S-CCCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             CC-EEEEEeCCCCEEEEEECCCCcEEEEEEcC-----C-CceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            95 24444555699999999988744333321     1 2569999999966554 4789999999864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.94  E-value=1.2e-23  Score=163.54  Aligned_cols=251  Identities=10%  Similarity=0.061  Sum_probs=164.0

Q ss_pred             CceeEEEEEeecCCCceEEEEeec--CCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEee-CCCcEEEEE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWN   82 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd   82 (294)
                      ......++|+  |+|+ +++++..  ++.|.+|++.+++  .+..+..+...+..++|+| ++++|++++ .++.|.+|+
T Consensus        39 ~~~p~~~a~s--pdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~  114 (347)
T 3hfq_A           39 TQNPTYLALS--AKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMK  114 (347)
T ss_dssp             CSCCCCEEEC--TTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred             cCCcceEEEc--cCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEE
Confidence            3445567776  9998 5555543  6899999997765  3444455778899999999 888777777 789999999


Q ss_pred             cCC-Cc--eEEEeeccC------CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           83 VQT-GI--CILIFAGAG------GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        83 ~~~-~~--~~~~~~~~~------~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      +.. +.  .+..+....      .+...+.+++|+| +++++++...++.|++|++.....                   
T Consensus       115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~-------------------  174 (347)
T 3hfq_A          115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQ-------------------  174 (347)
T ss_dssp             ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSC-------------------
T ss_pred             eCCCCCeeecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCc-------------------
Confidence            963 32  222222100      0123488999999 666777777788999999983110                   


Q ss_pred             eeeceEEeec-CCCceeeccee--cceEEE-eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC------CCeeEEEEc
Q 022590          154 VQFPVFIASV-HSNYVDCNRWL--GDFILS-KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE------CDIWFIKFS  223 (294)
Q Consensus       154 ~~~~~~~~~~-~~~~i~~~~~~--~~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~  223 (294)
                       ......... .......++|+  ++++++ ...++.|.+|++.....     ............      ..+..++|+
T Consensus       175 -~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~i~~s  248 (347)
T 3hfq_A          175 -LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG-----AFTQLGIVKTIPADYTAHNGAAAIRLS  248 (347)
T ss_dssp             -EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-----EEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred             -EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC-----ceEEeeeeeecCCCCCCCCcceeEEEC
Confidence             000111111 12245567776  665555 56788999999874211     111222222222      347889999


Q ss_pred             ccCCcceE-EEEcCCCeEEEEeccCC-CceeeeeccccccCCCeEEEEEccCCCEEEEecc-CCcEEEEecC
Q 022590          224 CDFHYNAA-AIGNREGKIFVWELQSS-PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE-DGAIWRWDAI  292 (294)
Q Consensus       224 ~~~~~~~l-~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg~i~vw~~~  292 (294)
                      |+++  +| ++...++.|.+|++... +......+.  .+...+..++|+|+|++|++++. ++.|.+|++.
T Consensus       249 pdG~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          249 HDGH--FLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             TTSC--EEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCC--EEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            9995  45 56667899999999733 222333333  33456889999999998888765 4899999664

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=4.7e-24  Score=165.00  Aligned_cols=233  Identities=10%  Similarity=0.008  Sum_probs=163.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc-c----CcceEEEEeCCCCCceEEEee-----------
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-H----GDSINEIRTQPLKPSLVVSAS-----------   73 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-h----~~~v~~~~~~~~~~~~l~s~~-----------   73 (294)
                      .+..++|+  |+|+.+++++..++.|.+||+.+++.+..+.. +    ...+..++|+| ++++|+++.           
T Consensus        35 ~~~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           35 TPMVPMVA--PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCCEEEC--TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEE
T ss_pred             CccceEEc--CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEeccccccccccc
Confidence            46778887  99974556777789999999999888776653 1    23678899999 887888775           


Q ss_pred             -CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCc
Q 022590           74 -KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  152 (294)
Q Consensus        74 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (294)
                       .++.|.+||+.+++.+..+.    ....+.+++|+| ++.+|+++  ++.|.+||+.+.....                
T Consensus       112 ~~~~~i~v~d~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~----------------  168 (337)
T 1pby_B          112 VQPTRVALYDAETLSRRKAFE----APRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVE----------------  168 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEE----CCSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEE----------------
T ss_pred             ccCceEEEEECCCCcEEEEEe----CCCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEee----------------
Confidence             57999999999988887776    345688899999 77777776  6899999998743211                


Q ss_pred             eeeeceEEeecCC--CceeecceecceEEEeeC-CC-----------------------eEEEecCCCCCCCCCCCCcee
Q 022590          153 YVQFPVFIASVHS--NYVDCNRWLGDFILSKSV-DN-----------------------EIVLWEPKMKEQSPGEGTADI  206 (294)
Q Consensus       153 ~~~~~~~~~~~~~--~~i~~~~~~~~~l~~~~~-d~-----------------------~i~iwd~~~~~~~~~~~~~~~  206 (294)
                             .+..+.  .++ .+..++..++..+. ++                       .|.+||+.+++.        .
T Consensus       169 -------~~~~~~~~~~~-~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--------~  232 (337)
T 1pby_B          169 -------DKPIQSWEAET-YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM--------A  232 (337)
T ss_dssp             -------EECSTTTTTTT-BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE--------E
T ss_pred             -------eeeccccCCCc-eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc--------e
Confidence                   111111  111 11112332322221 11                       578999987652        1


Q ss_pred             eeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcE
Q 022590          207 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI  286 (294)
Q Consensus       207 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  286 (294)
                      ......+...+..++|+|+++  +++++  ++.|++||+.+.+...  .+.   ....+.+++|+|+|++|++++.++.|
T Consensus       233 ~~~~~~~~~~~~~~~~s~dg~--~l~~~--~~~v~~~d~~~~~~~~--~~~---~~~~~~~~~~s~dg~~l~~~~~~~~i  303 (337)
T 1pby_B          233 MREVRIMDVFYFSTAVNPAKT--RAFGA--YNVLESFDLEKNASIK--RVP---LPHSYYSVNVSTDGSTVWLGGALGDL  303 (337)
T ss_dssp             EEEEEECSSCEEEEEECTTSS--EEEEE--ESEEEEEETTTTEEEE--EEE---CSSCCCEEEECTTSCEEEEESBSSEE
T ss_pred             EeecCCCCCceeeEEECCCCC--EEEEe--CCeEEEEECCCCcCcc--eec---CCCceeeEEECCCCCEEEEEcCCCcE
Confidence            223344456688899999994  66666  6999999998875332  222   12457899999999999999999999


Q ss_pred             EEEecCC
Q 022590          287 WRWDAIP  293 (294)
Q Consensus       287 ~vw~~~~  293 (294)
                      ++||+++
T Consensus       304 ~v~d~~~  310 (337)
T 1pby_B          304 AAYDAET  310 (337)
T ss_dssp             EEEETTT
T ss_pred             EEEECcC
Confidence            9999864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=1.4e-23  Score=162.10  Aligned_cols=235  Identities=12%  Similarity=0.034  Sum_probs=165.5

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee-CCCcEEEEEcCCCce-EEEeeccCC
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWNVQTGIC-ILIFAGAGG   97 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~-~~~~~~~~~   97 (294)
                      ++++..+++.+.++.|.+||..+++....+..+...+ .++|+| +++++++++ .++.|.+||+.+++. ...+.   .
T Consensus         7 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~   81 (331)
T 3u4y_A            7 TTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS-DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ---E   81 (331)
T ss_dssp             CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS-SSCEEEEEESTTCEEEEEECSSSSCEEEEEE---E
T ss_pred             CCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC-CCCEEEEEeCCCCeEEEEECCCCceeEEecc---c
Confidence            5555478888999999999999999888887777777 999999 777555554 489999999999987 66665   3


Q ss_pred             CCCceeEEEEecCCCceEEeeecCC---cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee
Q 022590           98 HRNEVLSVDFHPSDIYRIASCGMDN---TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL  174 (294)
Q Consensus        98 ~~~~v~~l~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (294)
                      +..+..+++|+| ++.+++++..++   .|.+||+.+..                       ....+.. .....++.|+
T Consensus        82 ~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~-----------------------~~~~~~~-~~~~~~~~~s  136 (331)
T 3u4y_A           82 GQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNK-----------------------FISTIPI-PYDAVGIAIS  136 (331)
T ss_dssp             CSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTE-----------------------EEEEEEC-CTTEEEEEEC
T ss_pred             CCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCC-----------------------eEEEEEC-CCCccceEEC
Confidence            555555599999 888777655553   89999998732                       2222222 3345677886


Q ss_pred             --cceEEE-eeCCCe-EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc
Q 022590          175 --GDFILS-KSVDNE-IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  250 (294)
Q Consensus       175 --~~~l~~-~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  250 (294)
                        ++++++ ...++. |.+|++......     .............+..++|+|+++ .+++++..++.|++||+.+++.
T Consensus       137 pdg~~l~~~~~~~~~~i~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~spdg~-~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          137 PNGNGLILIDRSSANTVRRFKIDADGVL-----FDTGQEFISGGTRPFNITFTPDGN-FAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             TTSSCEEEEEETTTTEEEEEEECTTCCE-----EEEEEEEECSSSSEEEEEECTTSS-EEEEEETTTTEEEEEECSSTTS
T ss_pred             CCCCEEEEEecCCCceEEEEEECCCCcE-----eecCCccccCCCCccceEECCCCC-EEEEEeCCCCeEEEEECCCCcc
Confidence              555554 455578 999999854310     001012223345678999999995 3556666789999999998764


Q ss_pred             ee-eeeccccccCCCeEEEEEccCCCEEEEe-ccCCcEEEEecCC
Q 022590          251 VL-IARLSHAQSKSPIRQTAMSYDGSTILSC-CEDGAIWRWDAIP  293 (294)
Q Consensus       251 ~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~dg~i~vw~~~~  293 (294)
                      .. ...+.   ....+..++|+|+|++|+.+ ..++.|.+||+++
T Consensus       211 ~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          211 ITLLNAVG---TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             CEEEEEEE---CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             cceeeecc---CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence            11 22332   22567889999999977655 4578899999864

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.94  E-value=3.2e-24  Score=170.90  Aligned_cols=166  Identities=21%  Similarity=0.232  Sum_probs=123.5

Q ss_pred             cCceeEEEEEeecCCCceEEE----EeecCCeEEEEEcCCc--------cc---cceecccCcceEEEEeCCCCCceEEE
Q 022590            7 KEESFYTVSWACNVDGIPFLV----AGGINGIIRVIDVSNE--------KL---HKSFVGHGDSINEIRTQPLKPSLVVS   71 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~----~~~~dg~i~iw~~~~~--------~~---~~~~~~h~~~v~~~~~~~~~~~~l~s   71 (294)
                      +...|++++|+  |+|+ +|+    +|+.|+.|+|||+.++        +.   ...+.+|...|++++|+|.++.+|++
T Consensus        91 ~~~~v~~l~~s--pdg~-~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las  167 (434)
T 2oit_A           91 MKFPIHHLALS--CDNL-TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV  167 (434)
T ss_dssp             CSSCEEEEEEC--TTSC-EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEE
T ss_pred             CCCcccEEEEc--CCCC-EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEE
Confidence            44579999998  8998 888    7889999999998765        11   34566799999999999954889999


Q ss_pred             eeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           72 ASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        72 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                      ++.||+|++||++++.......   +|...|.+++|+| ++.+|++|+.||.|++||++. ......             
T Consensus       168 ~s~Dg~v~iwD~~~~~~~~~~~---~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~~-~~~~~~-------------  229 (434)
T 2oit_A          168 CLADGSIAVLQVTETVKVCATL---PSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPTL-QEKKVI-------------  229 (434)
T ss_dssp             EETTSCEEEEEESSSEEEEEEE---CGGGCEEEEEECT-TSSCEEEEETTSCEEEECTTC-CEEEEE-------------
T ss_pred             EECCCeEEEEEcCCCcceeecc---CCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccCC-cccccc-------------
Confidence            9999999999999887665555   5889999999999 899999999999999999983 110000             


Q ss_pred             ceeeeceEEeecCCCceeecceecc--eEEE-eeCCC------eEEEecCCCCC
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWLGD--FILS-KSVDN------EIVLWEPKMKE  196 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~-~~~d~------~i~iwd~~~~~  196 (294)
                         ..+......|...+.++.|+++  ++++ ...+|      .+++|+++...
T Consensus       230 ---~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          230 ---PCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             ---CCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             ---cCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence               0000000123457889999833  3322 33343      38999998653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.94  E-value=2.8e-24  Score=163.16  Aligned_cols=223  Identities=11%  Similarity=0.055  Sum_probs=159.7

Q ss_pred             EeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC-CceEEEeeccCCC-CCceeEE
Q 022590           28 AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILIFAGAGGH-RNEVLSV  105 (294)
Q Consensus        28 ~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~-~~~v~~l  105 (294)
                      .++.|+.|++||+.+++.. .+..|...|.+++|+| ++++|++++ ++.|.+||+.+ ++......   .+ ...+.++
T Consensus        17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~   90 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDT---GFATICNNDH   90 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCC---TTCCCBCSCC
T ss_pred             CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEecc---ccccccccce
Confidence            3467899999999888765 4556889999999999 888888876 78999999998 77765554   34 4788999


Q ss_pred             EEecCCCceEEeee--cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEE-E
Q 022590          106 DFHPSDIYRIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL-S  180 (294)
Q Consensus       106 ~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~-~  180 (294)
                      +|+| ++.+|++++  .++...+|.++...                     . ....+..+ ..+..+.|+  ++.++ +
T Consensus        91 ~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~---------------------~-~~~~~~~~-~~~~~~~~spdg~~l~~~  146 (297)
T 2ojh_A           91 GISP-DGALYAISDKVEFGKSAIYLLPSTG---------------------G-TPRLMTKN-LPSYWHGWSPDGKSFTYC  146 (297)
T ss_dssp             EECT-TSSEEEEEECTTTSSCEEEEEETTC---------------------C-CCEECCSS-SSEEEEEECTTSSEEEEE
T ss_pred             EECC-CCCEEEEEEeCCCCcceEEEEECCC---------------------C-ceEEeecC-CCccceEECCCCCEEEEE
Confidence            9999 888888888  44566666664311                     0 01112222 236677776  66666 7


Q ss_pred             eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE-EcCCCeEEEEeccCCCceeeeecccc
Q 022590          181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI-GNREGKIFVWELQSSPPVLIARLSHA  259 (294)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~  259 (294)
                      +..++.+++|++.....        ....+..+...+..+.|+|+++  .++. +..++.+++|++..... ....+.  
T Consensus       147 ~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~~~~~~~~-~~~~~~--  213 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDSG--------VETRLTHGEGRNDGPDYSPDGR--WIYFNSSRTGQMQIWRVRVDGS-SVERIT--  213 (297)
T ss_dssp             EEETTEEEEEEEETTTC--------CEEECCCSSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTSS-CEEECC--
T ss_pred             ECCCCceEEEEEECCCC--------cceEcccCCCccccceECCCCC--EEEEEecCCCCccEEEECCCCC-CcEEEe--
Confidence            78899999998653221        2344455567789999999994  5554 44689999999873321 222333  


Q ss_pred             ccCCCeEEEEEccCCCEEEEeccC-----------CcEEEEecCC
Q 022590          260 QSKSPIRQTAMSYDGSTILSCCED-----------GAIWRWDAIP  293 (294)
Q Consensus       260 ~~~~~v~~~~~s~~~~~l~s~~~d-----------g~i~vw~~~~  293 (294)
                      .+...+..++|+|+|++|++++.+           +.|++||+++
T Consensus       214 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~  258 (297)
T 2ojh_A          214 DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG  258 (297)
T ss_dssp             CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred             cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence            445678999999999999988776           5699999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=8.1e-23  Score=158.42  Aligned_cols=232  Identities=10%  Similarity=0.058  Sum_probs=155.8

Q ss_pred             EEEEeecCCeEEEEEcCC-c--cccceecccCcceEEEEeCCCCCceEEEeeCC-CcEEEEEcC--CCce--EEEeeccC
Q 022590           25 FLVAGGINGIIRVIDVSN-E--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQ--TGIC--ILIFAGAG   96 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~-~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-g~i~vwd~~--~~~~--~~~~~~~~   96 (294)
                      ++++++.|+.|++|+++. +  +.+.. ..|...+.+++|+| ++++|++++.+ +.|.+|++.  +++.  +..+.   
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---   81 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA---   81 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE---
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccc---
Confidence            455557899999999953 3  22333 34777899999999 88888888776 999999997  5543  33343   


Q ss_pred             CCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-
Q 022590           97 GHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-  174 (294)
Q Consensus        97 ~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  174 (294)
                       ....+..++|+| ++.+|++++ .++.|.+||+.....                    ........ ....+.++.|+ 
T Consensus        82 -~~~~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~~~~~~--------------------~~~~~~~~-~~~~~~~~~~s~  138 (343)
T 1ri6_A           82 -LPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLP--------------------VGVVDVVE-GLDGCHSANISP  138 (343)
T ss_dssp             -CSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEE--------------------EEEEEEEC-CCTTBCCCEECT
T ss_pred             -cCCCCcEEEEcC-CCCEEEEEecCCCeEEEEECCCCcc--------------------cccccccc-CCCCceEEEECC
Confidence             233789999999 777665554 588999999942100                    11222222 33457788887 


Q ss_pred             -cceEEEee-CCCeEEEecCCC-CCCCCCCCCceeee--eeec-CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC-
Q 022590          175 -GDFILSKS-VDNEIVLWEPKM-KEQSPGEGTADILQ--KYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-  247 (294)
Q Consensus       175 -~~~l~~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-  247 (294)
                       ++++++++ .++.|++||+.. ++       .....  .... ....+..++|+|+++ .+++++..++.|.+|++.. 
T Consensus       139 dg~~l~~~~~~~~~v~~~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pdg~-~l~~~~~~~~~i~~~~~~~~  210 (343)
T 1ri6_A          139 DNRTLWVPALKQDRICLFTVSDDGH-------LVAQDPAEVTTVEGAGPRHMVFHPNEQ-YAYCVNELNSSVDVWELKDP  210 (343)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSC-------EEEEEEEEEECSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEESSCT
T ss_pred             CCCEEEEecCCCCEEEEEEecCCCc-------eeeecccccccCCCCCcceEEECCCCC-EEEEEeCCCCEEEEEEecCC
Confidence             66777776 899999999986 32       11111  2222 335688899999985 2445566899999999964 


Q ss_pred             -CCceeeeecc-cc---ccCCCeEEEEEccCCCEEE-EeccCCcEEEEecC
Q 022590          248 -SPPVLIARLS-HA---QSKSPIRQTAMSYDGSTIL-SCCEDGAIWRWDAI  292 (294)
Q Consensus       248 -~~~~~~~~~~-~~---~~~~~v~~~~~s~~~~~l~-s~~~dg~i~vw~~~  292 (294)
                       ++........ ..   .....+..++|+|+|++|+ ++..++.|.+||++
T Consensus       211 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          211 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence             3322222221 00   1134577899999998887 45589999999987

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=2.4e-23  Score=161.78  Aligned_cols=237  Identities=12%  Similarity=0.029  Sum_probs=163.1

Q ss_pred             cCCCceEEEEeecCCeEEEEEcCCccccceecccC-cceEEEEeCCCCCce-EEEeeCCCcEEEEEcCCCceEEEeeccC
Q 022590           19 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSL-VVSASKDESVRLWNVQTGICILIFAGAG   96 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~   96 (294)
                      ++++. ++++++.++.|++||..+++.+..+..+. ..+..++|+| +++. ++++..++.|.+||+.+++....+..  
T Consensus         8 ~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~--   83 (349)
T 1jmx_B            8 KAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANL--   83 (349)
T ss_dssp             CTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEES--
T ss_pred             cCCCE-EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc--
Confidence            36776 89999999999999999998888776543 2578999999 6664 55666789999999999988777662  


Q ss_pred             CC-----CCceeEEEEecCCCceEEeeecC------------CcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           97 GH-----RNEVLSVDFHPSDIYRIASCGMD------------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        97 ~~-----~~~v~~l~~~~~~~~~l~~~~~d------------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      .+     ...+.+++|+| +++++++++.+            +.|.+||+.+....                    ....
T Consensus        84 ~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--------------------~~~~  142 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA--------------------KPVR  142 (349)
T ss_dssp             CCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB--------------------CCSE
T ss_pred             ccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCcccc--------------------ceee
Confidence            12     22378999999 88888888765            89999999873211                    0111


Q ss_pred             EeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCce-------------------------e------
Q 022590          160 IASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD-------------------------I------  206 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~------  206 (294)
                      .. .+...+.+++|+  ++ +++++.  .|.+||+.+++.........                         .      
T Consensus       143 ~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (349)
T 1jmx_B          143 TF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR  218 (349)
T ss_dssp             EE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEE
T ss_pred             ec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeee
Confidence            11 233356777776  66 555443  49999998765311000000                         0      


Q ss_pred             ----------------------------eeeeecCCCCeeEEEEcc-cCCcceEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590          207 ----------------------------LQKYPVPECDIWFIKFSC-DFHYNAAAIGNREGKIFVWELQSSPPVLIARLS  257 (294)
Q Consensus       207 ----------------------------~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  257 (294)
                                                  ..........+..++++| ++  .+++++  ++.|.+||+.+.+....... 
T Consensus       219 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg--~~l~~~--~~~v~~~d~~~~~~~~~~~~-  293 (349)
T 1jmx_B          219 FKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP--NQIYGV--LNRLAKYDLKQRKLIKAANL-  293 (349)
T ss_dssp             C-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT--TEEEEE--ESEEEEEETTTTEEEEEEEC-
T ss_pred             cCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC--CEEEEE--cCeEEEEECccCeEEEEEcC-
Confidence                                        000001122456778889 88  466666  88999999998753322221 


Q ss_pred             ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          258 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       258 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                          ...+.+++|+|+|++|++++.++.|++||+++
T Consensus       294 ----~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~  325 (349)
T 1jmx_B          294 ----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT  325 (349)
T ss_dssp             ----SSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred             ----CCCccceEECCCCCEEEEecCCCeEEEEeccc
Confidence                23467899999999999888999999999864

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.93  E-value=7.4e-24  Score=175.72  Aligned_cols=231  Identities=11%  Similarity=0.008  Sum_probs=162.6

Q ss_pred             CceeEEEEEeecCCCceEEEEeec-CCeEEEEEcCCccccceecccC-cceEEEEeCCCCCceEEEeeC---CCcEEEEE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGI-NGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASK---DESVRLWN   82 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd   82 (294)
                      ..+|++++|+  |||+ .||+++. ||+++||++++++..+ +..|. ..+..++|+| + +++++++.   +...++|.
T Consensus        21 ~~~~~~~~~~--~DG~-~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~sp-d-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           21 AVEKYSLQGV--VDGD-KLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGV-G-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HSCEEEEEEE--ETTT-EEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTC-S-EEEEEEECSTTSCCEEEEE
T ss_pred             ccchheeecC--CCCC-eEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCC-C-eEEEEeccCCCCcceEEEE
Confidence            5689999998  8999 8888776 9999999997666544 44444 6899999999 6 77777765   45567766


Q ss_pred             cCC--CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           83 VQT--GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        83 ~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      +..  ......+.    ....+...+|+|++...+++.+.++.+.+||+.++.                       ....
T Consensus        95 ~~~~~~g~~~~l~----~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-----------------------~~~l  147 (582)
T 3o4h_A           95 VNTSRPGEEQRLE----AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-----------------------LREL  147 (582)
T ss_dssp             EETTSTTCCEECT----TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-----------------------EEEE
T ss_pred             EeccCCCcccccc----CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-----------------------EEEe
Confidence            543  22222333    222345668888333444444455566699998732                       1111


Q ss_pred             eecCCCceeeccee--cceEEEeeCC----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          161 ASVHSNYVDCNRWL--GDFILSKSVD----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                      . .+..  .++.|+  |+++++++.+    +.|++||+.+++          ...+..+...+..++|+|++  ..|+++
T Consensus       148 ~-~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~----------~~~l~~~~~~~~~~~~SpDG--~~l~~~  212 (582)
T 3o4h_A          148 A-RLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG----------LRVFDSGEGSFSSASISPGM--KVTAGL  212 (582)
T ss_dssp             E-EESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC----------CEEECCSSCEEEEEEECTTS--CEEEEE
T ss_pred             e-cCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC----------ceEeecCCCccccceECCCC--CEEEEc
Confidence            1 1222  555564  8999988777    789999998764          23445566778999999999  478888


Q ss_pred             cCCC--eEEEEeccCCCceeeeeccccccCCCeEEEE--------EccCCCEEEEeccCCcEEEEec
Q 022590          235 NREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTA--------MSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       235 ~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ..++  .|++||+.+++..   .+.  .+...+..++        |+|||.++++++.||.+++|++
T Consensus       213 ~~~~~~~i~~~d~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          213 ETAREARLVTVDPRDGSVE---DLE--LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             ECSSCEEEEEECTTTCCEE---ECC--CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             cCCCeeEEEEEcCCCCcEE---Ecc--CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            8888  8999999988643   222  4445566666        9999999999999999999986

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.6e-22  Score=157.46  Aligned_cols=227  Identities=12%  Similarity=0.094  Sum_probs=165.4

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCc---------ceEEEEeCCCCCceEEEee--CCCcE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD---------SINEIRTQPLKPSLVVSAS--KDESV   78 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~---------~v~~~~~~~~~~~~l~s~~--~dg~i   78 (294)
                      .+..++|+  |+|+.++++...++.|.+||..+++.+..+..+..         .+.+++|+| +++.+++++  .++.|
T Consensus        90 ~~~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i  166 (353)
T 3vgz_A           90 KPFGATIN--NTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVI  166 (353)
T ss_dssp             CCCSEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEE
T ss_pred             CcceEEEC--CCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceE
Confidence            45667776  89984555666689999999999988877765432         278899999 766666555  47899


Q ss_pred             EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      .+||..+++.+..+.   .+...+.+++|+| ++..+++++.++.|.+||+.+...                       .
T Consensus       167 ~~~d~~~~~~~~~~~---~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~-----------------------~  219 (353)
T 3vgz_A          167 WVVDGGNIKLKTAIQ---NTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKI-----------------------L  219 (353)
T ss_dssp             EEEETTTTEEEEEEC---CCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEE-----------------------E
T ss_pred             EEEcCCCCceEEEec---CCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeE-----------------------E
Confidence            999999999888776   3555688999999 888888888899999999987421                       1


Q ss_pred             EEee----cCCCceeeccee--cceEEEee-CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590          159 FIAS----VHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  231 (294)
Q Consensus       159 ~~~~----~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  231 (294)
                      ....    .+...+..++|+  ++++++++ .++.|.+||+.+++         .+..+....  ...++|+|+++ .++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~---------~~~~~~~~~--~~~~~~s~dg~-~l~  287 (353)
T 3vgz_A          220 SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN---------ILAKVAAPE--SLAVLFNPARN-EAY  287 (353)
T ss_dssp             EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC---------EEEEEECSS--CCCEEEETTTT-EEE
T ss_pred             EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc---------EEEEEEcCC--CceEEECCCCC-EEE
Confidence            1211    244556677776  66666555 45999999998765         344444332  25689999995 355


Q ss_pred             EEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC
Q 022590          232 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED  283 (294)
Q Consensus       232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d  283 (294)
                      ++...++.|.+||..+++....  +..   ...+.+++|+|+|++|+.+..+
T Consensus       288 v~~~~~~~v~~~d~~~~~~~~~--~~~---~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          288 VTHRQAGKVSVIDAKSYKVVKT--FDT---PTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEE--EEC---CSEEEEEEECTTSCEEEEEEEC
T ss_pred             EEECCCCeEEEEECCCCeEEEE--Eec---CCCCCeEEEcCCCCEEEEEEcc
Confidence            5566799999999988764333  321   2357999999999977776555

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=1.9e-24  Score=183.69  Aligned_cols=237  Identities=11%  Similarity=0.044  Sum_probs=166.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCc---ceEEEEeCCCCCceEEEeeCC---------C
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD---SINEIRTQPLKPSLVVSASKD---------E   76 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~d---------g   76 (294)
                      ..+.+++|+  |||+ ++++ +.||.|++||+.+++....+..|..   .|.+++|+| ++++|++++.+         +
T Consensus        17 ~~~~~~~~s--pdg~-~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~   91 (723)
T 1xfd_A           17 IHDPEAKWI--SDTE-FIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTG   91 (723)
T ss_dssp             CCCCCCCBS--SSSC-BCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCS
T ss_pred             ccccccEEc--CCCc-EEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECC-CCCEEEEEecCccceeeccee
Confidence            346677887  9998 6766 7899999999999988877777665   499999999 89999988764         7


Q ss_pred             cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           77 SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        77 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      .+.+||+.+++. ..+....+|...+..++|+| +++.|+.++. +.|++||+.++..                      
T Consensus        92 ~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~----------------------  146 (723)
T 1xfd_A           92 YYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQA----------------------  146 (723)
T ss_dssp             EEEEEESSSCCC-EECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCC----------------------
T ss_pred             eEEEEECCCCce-EeccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCce----------------------
Confidence            788999998876 34443334556689999999 8888888875 7999999987321                      


Q ss_pred             ceEEeecCCC------------------ceeeccee--cceEEEeeCCC-------------------------------
Q 022590          157 PVFIASVHSN------------------YVDCNRWL--GDFILSKSVDN-------------------------------  185 (294)
Q Consensus       157 ~~~~~~~~~~------------------~i~~~~~~--~~~l~~~~~d~-------------------------------  185 (294)
                       ......+..                  .+.++.|+  |+.|++++.++                               
T Consensus       147 -~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~  225 (723)
T 1xfd_A          147 -IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSEN  225 (723)
T ss_dssp             -EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCC
T ss_pred             -EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCC
Confidence             111111111                  23667776  77888776543                               


Q ss_pred             ---eEEEecCCCCCCCCCCCCceeeeeeec------CCCCeeEEEEcccCCcceEEEEc----CCCeEEEEeccCCCcee
Q 022590          186 ---EIVLWEPKMKEQSPGEGTADILQKYPV------PECDIWFIKFSCDFHYNAAAIGN----REGKIFVWELQSSPPVL  252 (294)
Q Consensus       186 ---~i~iwd~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~  252 (294)
                         .|++||+.+++.         ...+..      +...+..++|+|+++  ++++..    .+..|++||+.+++...
T Consensus       226 ~~~~l~~~d~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~SpDg~--~l~~~~~~~~~~~~i~~~d~~~g~~~~  294 (723)
T 1xfd_A          226 PSISLHVIGLNGPTH---------DLEMMPPDDPRMREYYITMVKWATSTK--VAVTWLNRAQNVSILTLCDATTGVCTK  294 (723)
T ss_dssp             CEEEEEEEESSSSCC---------CEECCCCCCGGGSSEEEEEEEESSSSE--EEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             CeeEEEEEECCCCce---------eEEeeCCccCCCccceeEEEEEeCCCe--EEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence               789999887652         112222      245678899999994  665543    33679999999886433


Q ss_pred             eeeccccccCCCe----EEEEEccCCCEEEE--eccCC------cEEEEe
Q 022590          253 IARLSHAQSKSPI----RQTAMSYDGSTILS--CCEDG------AIWRWD  290 (294)
Q Consensus       253 ~~~~~~~~~~~~v----~~~~~s~~~~~l~s--~~~dg------~i~vw~  290 (294)
                      ....   .+...+    ..++|+|||+.|+.  +..++      .|++||
T Consensus       295 ~~~~---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          295 KHED---ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             EEEE---ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             EEEe---ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence            3222   122223    37899999997775  44666      466776

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.8e-22  Score=171.12  Aligned_cols=245  Identities=11%  Similarity=0.103  Sum_probs=168.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCC-----ccccceecccCcc--------------eEEEEeCCCCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-----EKLHKSFVGHGDS--------------INEIRTQPLKP   66 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~h~~~--------------v~~~~~~~~~~   66 (294)
                      .+...+.+++|+  |||+ +|+++ .++.|++|++.+     ++.......+...              +.+++|+| ++
T Consensus       118 ~~~~~~~~~~~S--pdG~-~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg  192 (706)
T 2z3z_A          118 DTNEETASLDFS--PVGD-RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KG  192 (706)
T ss_dssp             CCTTCCTTCEEC--TTSS-EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TS
T ss_pred             CCcccccCCcCC--CCCC-EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CC
Confidence            345667788887  9999 77774 689999999998     7766544444332              48999999 88


Q ss_pred             ceEEEee---------------------------------CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCc
Q 022590           67 SLVVSAS---------------------------------KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIY  113 (294)
Q Consensus        67 ~~l~s~~---------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~  113 (294)
                      ++|++++                                 .+..|.+||+.+++...... ...|...+.+++|+| +++
T Consensus       193 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~~sp-dg~  270 (706)
T 2z3z_A          193 SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT-GEPKEKFLTNLSWSP-DEN  270 (706)
T ss_dssp             SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC-CSCTTCEEEEEEECT-TSS
T ss_pred             CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc-CCCCceeEeeEEEEC-CCC
Confidence            9998887                                 44679999998887654332 124677899999999 888


Q ss_pred             eEEeeecCC-----cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC---ceeecce----ecceEEEe
Q 022590          114 RIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN---YVDCNRW----LGDFILSK  181 (294)
Q Consensus       114 ~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~----~~~~l~~~  181 (294)
                      .|++++.++     .|++||+.++...                    ..+. ...+..   .+..+.|    ++++++++
T Consensus       271 ~l~~~~~~~~~~~~~v~~~d~~~g~~~--------------------~~~~-~~~~~~~~~~~~~~~~sp~~dg~~l~~~  329 (706)
T 2z3z_A          271 ILYVAEVNRAQNECKVNAYDAETGRFV--------------------RTLF-VETDKHYVEPLHPLTFLPGSNNQFIWQS  329 (706)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTCCEE--------------------EEEE-EEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred             EEEEEEeCCCCCeeEEEEEECCCCcee--------------------eEEE-EccCCCeECccCCceeecCCCCEEEEEE
Confidence            888887776     8999999874110                    0010 011111   2345556    46688888


Q ss_pred             eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE-EEEcccCCcceEEEEcCCC----eEEEEeccCCCceeeeec
Q 022590          182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF-IKFSCDFHYNAAAIGNREG----KIFVWELQSSPPVLIARL  256 (294)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~  256 (294)
                      ..++.+++|++....        ..+..+..+...+.. ++|+|+++ .+++++..++    .|..||+.+++.   ..+
T Consensus       330 ~~~g~~~l~~~~~~~--------~~~~~l~~~~~~v~~~~~~spdg~-~l~~~~~~~~~~~~~l~~~d~~~~~~---~~l  397 (706)
T 2z3z_A          330 RRDGWNHLYLYDTTG--------RLIRQVTKGEWEVTNFAGFDPKGT-RLYFESTEASPLERHFYCIDIKGGKT---KDL  397 (706)
T ss_dssp             CTTSSCEEEEEETTS--------CEEEECCCSSSCEEEEEEECTTSS-EEEEEESSSCTTCBEEEEEETTCCCC---EES
T ss_pred             ccCCccEEEEEECCC--------CEEEecCCCCeEEEeeeEEcCCCC-EEEEEecCCCCceEEEEEEEcCCCCc---eec
Confidence            889999999876211        134445555556766 79999985 3445555555    677777766542   222


Q ss_pred             cccccCCCeEEEEEccCCCEEEEeccC----CcEEEEecCC
Q 022590          257 SHAQSKSPIRQTAMSYDGSTILSCCED----GAIWRWDAIP  293 (294)
Q Consensus       257 ~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~vw~~~~  293 (294)
                      .   +...+.+++|+|+|++|+..+.+    +.|++||+++
T Consensus       398 ~---~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          398 T---PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             C---CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             c---CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence            2   34568999999999988876443    5699999864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=2.5e-22  Score=170.69  Aligned_cols=239  Identities=11%  Similarity=0.024  Sum_probs=155.4

Q ss_pred             eeEEEEEeecCCCceEEEEeecC---------CeEEEEEcCCccc--cceecccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGIN---------GIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i   78 (294)
                      .|.+++|+  |||+ +|++++.+         +.|.+||+.+++.  +.....|...+..++|+| +++.|+.++. +.|
T Consensus        62 ~v~~~~~S--pDg~-~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i  136 (723)
T 1xfd_A           62 RAIRYEIS--PDRE-YALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNI  136 (723)
T ss_dssp             TCSEEEEC--TTSS-EEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEET-TEE
T ss_pred             ccceEEEC--CCCC-EEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECC-CCCEEEEEEC-CeE
Confidence            48888887  9999 88888764         7889999998875  222234555689999999 8888998876 799


Q ss_pred             EEEEcCCCceEEEeeccCCCCCc------------------eeEEEEecCCCceEEeeecCC------------------
Q 022590           79 RLWNVQTGICILIFAGAGGHRNE------------------VLSVDFHPSDIYRIASCGMDN------------------  122 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~------------------v~~l~~~~~~~~~l~~~~~dg------------------  122 (294)
                      .+||+.+++......   .+...                  +.+++|+| +++.|++++.|+                  
T Consensus       137 ~~~~~~~g~~~~~~~---~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~  212 (723)
T 1xfd_A          137 YYCAHVGKQAIRVVS---TGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPT  212 (723)
T ss_dssp             EEESSSSSCCEEEEC---CCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCC
T ss_pred             EEEECCCCceEEEec---CCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCc
Confidence            999999888766554   23332                  37899999 888888877553                  


Q ss_pred             ----------------cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec------CCCceeeccee--cceE
Q 022590          123 ----------------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV------HSNYVDCNRWL--GDFI  178 (294)
Q Consensus       123 ----------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~--~~~l  178 (294)
                                      .|++||+.+..                       ....+..      +...+..+.|+  |+++
T Consensus       213 ~~~~~~~~~G~~~~~~~l~~~d~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l  269 (723)
T 1xfd_A          213 VKPYHYPKAGSENPSISLHVIGLNGPT-----------------------HDLEMMPPDDPRMREYYITMVKWATSTKVA  269 (723)
T ss_dssp             CEEEECCBTTSCCCEEEEEEEESSSSC-----------------------CCEECCCCCCGGGSSEEEEEEEESSSSEEE
T ss_pred             ceeccCCCCCCCCCeeEEEEEECCCCc-----------------------eeEEeeCCccCCCccceeEEEEEeCCCeEE
Confidence                            45555554421                       0111222      35667788887  6677


Q ss_pred             EEeeC----CCeEEEecCCCCCCCCCCCCceeeeeee-cCCCCe----eEEEEcccCCcceEE-EEcCCC------eEEE
Q 022590          179 LSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYP-VPECDI----WFIKFSCDFHYNAAA-IGNREG------KIFV  242 (294)
Q Consensus       179 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~i----~~~~~~~~~~~~~l~-~~~~dg------~i~i  242 (294)
                      ++...    +..|++||+.+++.         ..... .+...+    ..++|+|+++. +++ ++..++      .|.+
T Consensus       270 ~~~~~~~~~~~~i~~~d~~~g~~---------~~~~~~~~~~~~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~~~~l~~  339 (723)
T 1xfd_A          270 VTWLNRAQNVSILTLCDATTGVC---------TKKHEDESEAWLHRQNEEPVFSKDGRK-FFFIRAIPQGGRGKFYHITV  339 (723)
T ss_dssp             EEEEETTSCEEEEEEEETTTCCE---------EEEEEEECSSCCCCCCCCCEECTTSCS-EEEEEEECCSSSSCEEEEEE
T ss_pred             EEEEcCCCCeEEEEEEeCCCCcc---------eEEEEeccCCEEeccCCCceEcCCCCe-EEEEEecccCCCcceeEEEE
Confidence            66543    35799999987642         22211 122222    36799999962 333 356677      5666


Q ss_pred             Ee-ccCCCceeeeeccccccCCCeEE-EEEccCCCEEEEeccC---CcEEEEecC
Q 022590          243 WE-LQSSPPVLIARLSHAQSKSPIRQ-TAMSYDGSTILSCCED---GAIWRWDAI  292 (294)
Q Consensus       243 ~d-~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~s~~~d---g~i~vw~~~  292 (294)
                      || ...++......+.  .+...+.. ++|+|+|+.|+..+.+   +.+++|++.
T Consensus       340 ~d~~~~~~~~~~~~l~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          340 SSSQPNSSNDNIQSIT--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             ECSSCCSSSCCCCBSC--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             EeccCCCCccceeEee--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence            77 3333210022222  22233444 6999999999765544   789999875

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=2e-22  Score=171.74  Aligned_cols=237  Identities=13%  Similarity=0.080  Sum_probs=166.0

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      .|.+++|+  |||+ +|++++. +.|++||+.++.  ....+..|...+..++|+| ++++|+.++. +.|.+||+.+++
T Consensus       110 ~v~~~~~S--pDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP-DG~~la~~~~-~~i~~~d~~~g~  183 (741)
T 2ecf_A          110 GIVDYQWS--PDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP-KGGFVSFIRG-RNLWVIDLASGR  183 (741)
T ss_dssp             ESCCCEEC--TTSS-EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT-TSSEEEEEET-TEEEEEETTTTE
T ss_pred             CcceeEEC--CCCC-EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC-CCCEEEEEeC-CcEEEEecCCCC
Confidence            47888887  9999 8888876 899999998873  4556777888999999999 8898888874 689999998887


Q ss_pred             eEEEeeccCCCCCc----------------eeEEEEecCCCceEEeeecCC-----------------------------
Q 022590           88 CILIFAGAGGHRNE----------------VLSVDFHPSDIYRIASCGMDN-----------------------------  122 (294)
Q Consensus        88 ~~~~~~~~~~~~~~----------------v~~l~~~~~~~~~l~~~~~dg-----------------------------  122 (294)
                      ......   .+...                +.++.|+| +++.|++++.|+                             
T Consensus       184 ~~~~~~---~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~  259 (741)
T 2ecf_A          184 QMQLTA---DGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDA  259 (741)
T ss_dssp             EEECCC---CCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSC
T ss_pred             EEEecc---CCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCC
Confidence            655443   23222                47899999 888888887765                             


Q ss_pred             ----cEEEEeccc-cccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce-ecceEEEeeC-----CCeEEEec
Q 022590          123 ----TVKIWSMKE-FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-LGDFILSKSV-----DNEIVLWE  191 (294)
Q Consensus       123 ----~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~-----d~~i~iwd  191 (294)
                          .|++||+.+ ....                     .+.....|...+..++| +|++|++++.     +..|++||
T Consensus       260 ~~~~~l~~~d~~~~~~~~---------------------~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d  318 (741)
T 2ecf_A          260 NVQVKLGVISPAEQAQTQ---------------------WIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVT  318 (741)
T ss_dssp             CCEEEEEEECSSTTCCCE---------------------EECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEE
T ss_pred             CCeeEEEEEECCCCCceE---------------------EecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEE
Confidence                677777664 3210                     00000135566666666 4667776553     56799999


Q ss_pred             CCCCCCCCCCCCceeeeeeecCCC----CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEE
Q 022590          192 PKMKEQSPGEGTADILQKYPVPEC----DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ  267 (294)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~  267 (294)
                      +.+++.         ......+..    .+..++|+|+++  ++++++.+|.+++|.+.....  ...+.  .+...+..
T Consensus       319 ~~~g~~---------~~~~~~~~~~~~~~~~~~~~spdg~--~~~~~~~~g~~~l~~~~~~~~--~~~l~--~~~~~v~~  383 (741)
T 2ecf_A          319 LASNQQ---------RVLAHETSPTWVPLHNSLRFLDDGS--ILWSSERTGFQHLYRIDSKGK--AAALT--HGNWSVDE  383 (741)
T ss_dssp             TTTCCE---------EEEEEEECSSCCCCCSCCEECTTSC--EEEEECTTSSCEEEEECSSSC--EEESC--CSSSCEEE
T ss_pred             CCCCce---------EEEEEcCCCCcCCcCCceEECCCCe--EEEEecCCCccEEEEEcCCCC--eeeee--ecceEEEe
Confidence            987652         222222221    345789999994  888889999888888763322  33333  45567877


Q ss_pred             E-EEccCCCEEE-EeccCC--cEEEEecC
Q 022590          268 T-AMSYDGSTIL-SCCEDG--AIWRWDAI  292 (294)
Q Consensus       268 ~-~~s~~~~~l~-s~~~dg--~i~vw~~~  292 (294)
                      + .|+|+|+.|+ +++.++  .+++|++.
T Consensus       384 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          384 LLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             EEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             EeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            7 5999998775 455555  89999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.91  E-value=7.9e-22  Score=152.47  Aligned_cols=225  Identities=11%  Similarity=0.102  Sum_probs=157.5

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCc--ceEEEEeCCCCCc-eEEEeeCCCcEEEEEcCCCceEEEeeccC--CCC
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGD--SINEIRTQPLKPS-LVVSASKDESVRLWNVQTGICILIFAGAG--GHR   99 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~   99 (294)
                      ++++++.++.|.+||+.+++.+..+.....  .+..++|+| +++ +++++..++.|.+||+.+++.+..+....  .|.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC-CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            799999999999999999988877763322  588999999 665 45666778999999999999887766310  012


Q ss_pred             CceeEEEEecCCCceEEeee------------cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590          100 NEVLSVDFHPSDIYRIASCG------------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      ..+.+++|+| ++.+++++.            .++.|.+||+.+..                       ....+.. ...
T Consensus        82 ~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-----------------------~~~~~~~-~~~  136 (337)
T 1pby_B           82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-----------------------RRKAFEA-PRQ  136 (337)
T ss_dssp             ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-----------------------EEEEEEC-CSS
T ss_pred             ccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCc-----------------------EEEEEeC-CCC
Confidence            2678899999 777777775            57999999998632                       1222222 334


Q ss_pred             eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC-------
Q 022590          168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG-------  238 (294)
Q Consensus       168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-------  238 (294)
                      +..+.|+  +++++++  ++.|.+||+.+++         ....+..... ...+.|+|++. .+++++..++       
T Consensus       137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~---------~~~~~~~~~~-~~~~~~s~dg~-~l~~~~~~~~~~~~~~~  203 (337)
T 1pby_B          137 ITMLAWARDGSKLYGL--GRDLHVMDPEAGT---------LVEDKPIQSW-EAETYAQPDVL-AVWNQHESSGVMATPFY  203 (337)
T ss_dssp             CCCEEECTTSSCEEEE--SSSEEEEETTTTE---------EEEEECSTTT-TTTTBCCCBCC-CCCCCCTTTTEEEEEEE
T ss_pred             cceeEECCCCCEEEEe--CCeEEEEECCCCc---------Eeeeeecccc-CCCceeCCCcc-EEeeeccCCCceeeeee
Confidence            5666775  6777776  6889999998764         3333333220 11236788885 2223333333       


Q ss_pred             ----------------eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          239 ----------------KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       239 ----------------~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                                      .|.+||+.+++.. ....  ..+...+.+++|+|+|++|+++  ++.|++||+++
T Consensus       204 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~--~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~  269 (337)
T 1pby_B          204 TARKDIDPADPTAYRTGLLTMDLETGEMA-MREV--RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             EEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE--EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             ccccccccccccccccceEEEeCCCCCce-Eeec--CCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC
Confidence                            4689999988743 2222  2455678899999999999988  79999999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=7.6e-22  Score=173.72  Aligned_cols=243  Identities=11%  Similarity=0.024  Sum_probs=180.5

Q ss_pred             ccCc-eeEEEEEeecCCCceEEEEeecCCeEE-EEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEE-SFYTVSWACNVDGIPFLVAGGINGIIR-VIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~-iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .|.+ .+..++|+   +|+ .|+.++.++.+. +|++.+++... +.+|...+..++|+| ++++|++++.++.|++||+
T Consensus       334 ~~~~~~~~~~~~s---dg~-~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~  407 (1045)
T 1k32_A          334 EPLRIRYVRRGGD---TKV-AFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDL  407 (1045)
T ss_dssp             CCSCEEEEEECSS---SEE-EEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred             CCCcceEEeeeEc---CCC-eEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECC-CCCEEEEECCCCeEEEEEC
Confidence            4455 77888875   787 788888888888 99988776543 447888999999999 8999999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC----------cEEEEeccccccccccceeecCCCCCCCCce
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg----------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      .+++....+.   +|...+.+++|+| ++.+|++++.++          .|++||+.+.                     
T Consensus       408 ~tg~~~~~~~---~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g---------------------  462 (1045)
T 1k32_A          408 ETGKPTVIER---SREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR---------------------  462 (1045)
T ss_dssp             TTCCEEEEEE---CSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTT---------------------
T ss_pred             CCCceEEecc---CCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCC---------------------
Confidence            9998877775   5888999999999 888888877654          8999999872                     


Q ss_pred             eeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCC--------------------------------
Q 022590          154 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP--------------------------------  199 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~--------------------------------  199 (294)
                        . ...+..|...+..+.|+  |++|+.++.++...+|+........                                
T Consensus       463 --~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  539 (1045)
T 1k32_A          463 --K-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE  539 (1045)
T ss_dssp             --E-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCC
T ss_pred             --c-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCcccccccc
Confidence              1 34455566777778886  7889988888877777754322100                                


Q ss_pred             --CCCCceeeeeeecCCCCeeEEEEcccCCcceEEE-------------EcCCCeEEEEeccCCCceeeeeccccccCCC
Q 022590          200 --GEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI-------------GNREGKIFVWELQSSPPVLIARLSHAQSKSP  264 (294)
Q Consensus       200 --~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  264 (294)
                        .......+..+..+...+..+.++|++  .++++             ......|.+||+.+++.....        ..
T Consensus       540 ~d~~g~~~~~~~l~~~~~~~~~~~~s~dg--~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~--------~~  609 (1045)
T 1k32_A          540 YDLNDMYKRSSPINVDPGDYRMIIPLESS--ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK--------NN  609 (1045)
T ss_dssp             CCCTTGGGGCEECSCCCBCEEEEEECSSE--EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE--------EE
T ss_pred             ccccCHhHceEEcCCCCCChhheEEcCCC--eEEEEecccCcccccccccCCCceEEEEECCCCcEEEee--------cC
Confidence              000011223334455678899999998  45554             123557888998887632221        34


Q ss_pred             eEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          265 IRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       265 v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +..++|||||++|++++.+ .|++||+.+
T Consensus       610 v~~~~~S~DG~~l~~~~~~-~i~~~d~~~  637 (1045)
T 1k32_A          610 LTDLRLSADRKTVMVRKDD-GKIYTFPLE  637 (1045)
T ss_dssp             EEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred             cceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence            7899999999999999766 799999865

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.91  E-value=3.2e-21  Score=150.61  Aligned_cols=256  Identities=12%  Similarity=0.047  Sum_probs=157.7

Q ss_pred             CceeEEEEEeecCCCceEEEEeecC----CeEEEEEcCC--ccc--cceecccCcceEEEEeCCCCCceEEEe-eCCCcE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGIN----GIIRVIDVSN--EKL--HKSFVGHGDSINEIRTQPLKPSLVVSA-SKDESV   78 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~d----g~i~iw~~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~dg~i   78 (294)
                      ......++|+  |+|+ +|++++.+    +.|.+|+++.  ++.  +.....+......+++   ++++|+++ ..++.|
T Consensus        49 ~~~p~~l~~s--pdg~-~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v  122 (361)
T 3scy_A           49 VANPSYLIPS--ADGK-FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSI  122 (361)
T ss_dssp             CSCCCSEEEC--TTSS-EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEE
T ss_pred             CCCCceEEEC--CCCC-EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEE
Confidence            3445556776  9998 88888875    8999999865  332  3333445566777887   34455554 468999


Q ss_pred             EEEEcCCCceEEEe----ec-------cCCCCCceeEEEEecCCCceE-EeeecCCcEEEEeccccccccccceeecCCC
Q 022590           79 RLWNVQTGICILIF----AG-------AGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP  146 (294)
Q Consensus        79 ~vwd~~~~~~~~~~----~~-------~~~~~~~v~~l~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  146 (294)
                      .+|++.....+..+    ..       ...+...+.+++|+| +++++ ++...++.|.+|++..........       
T Consensus       123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~-------  194 (361)
T 3scy_A          123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKE-------  194 (361)
T ss_dssp             EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCC-------
T ss_pred             EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCccccc-------
Confidence            99999754332211    10       001233468899999 77655 445558899999988632100000       


Q ss_pred             CCCCCceeeeceEEeecCCCceeeccee--cceEEEee-CCCeEEEecCCCCCCCCCCCCceeeeeee---cCCCCeeEE
Q 022590          147 SKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFI  220 (294)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~  220 (294)
                         ..............+......++|+  ++++++++ .++.|.+||+.++..       ..+....   .+......+
T Consensus       195 ---~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-------~~~~~~~~~~~~~~~~~~i  264 (361)
T 3scy_A          195 ---KFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-------DEIQTVAADTVNAQGSGDI  264 (361)
T ss_dssp             ---CCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-------EEEEEEESCSSCCCCEEEE
T ss_pred             ---ceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-------EEeEEEecCCCCCCCcccE
Confidence               0000000011122233456677886  66776666 689999999985421       1222222   223456789


Q ss_pred             EEcccCCcceEEEEc-C-CCeEEEEecc--CCCceeeeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEecC
Q 022590          221 KFSCDFHYNAAAIGN-R-EGKIFVWELQ--SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAI  292 (294)
Q Consensus       221 ~~~~~~~~~~l~~~~-~-dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~  292 (294)
                      +|+|+++  +|+++. . ++.|.+|++.  +++......+.  . ...+..++|+|+|++|++++ .++.|.+|++.
T Consensus       265 ~~spdg~--~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          265 HLSPDGK--YLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             EECTTSS--EEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCC--EEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence            9999995  565544 4 5899999996  34433333332  2 35678999999999888877 67899998765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=1e-21  Score=166.53  Aligned_cols=239  Identities=10%  Similarity=0.077  Sum_probs=164.5

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC---
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT---   85 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~---   85 (294)
                      ..|.+++|+  |+ + .++.+ .++.|++||+.+++... +..+...+.+++|+| +++.|+++ .|+.|.+||+.+   
T Consensus        82 ~~v~~~~~s--pd-~-~~~~~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~Sp-dG~~la~~-~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           82 FPSFRTLDA--GR-G-LVVLF-TQGGLVGFDMLARKVTY-LFDTNEETASLDFSP-VGDRVAYV-RNHNLYIARGGKLGE  153 (706)
T ss_dssp             CCCEEEEET--TT-T-EEEEE-ETTEEEEEETTTTEEEE-EECCTTCCTTCEECT-TSSEEEEE-ETTEEEEEECBCTTS
T ss_pred             cCceeEEEC--CC-C-eEEEE-ECCEEEEEECCCCceEE-ccCCcccccCCcCCC-CCCEEEEE-ECCeEEEEecCcccc
Confidence            568899987  88 5 45444 35999999998876544 445677899999999 88888885 679999999988   


Q ss_pred             --CceEEEeeccCCCCCc--------------eeEEEEecCCCceEEeee------------------------------
Q 022590           86 --GICILIFAGAGGHRNE--------------VLSVDFHPSDIYRIASCG------------------------------  119 (294)
Q Consensus        86 --~~~~~~~~~~~~~~~~--------------v~~l~~~~~~~~~l~~~~------------------------------  119 (294)
                        ++......   .+...              +.++.|+| ++++|++++                              
T Consensus       154 ~~g~~~~~~~---~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g  229 (706)
T 2z3z_A          154 GMSRAIAVTI---DGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG  229 (706)
T ss_dssp             CCCCCEESCS---CCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred             cCCCcEEecc---CCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence              77655433   22222              58999999 888888887                              


Q ss_pred             ---cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCC-----eEEE
Q 022590          120 ---MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN-----EIVL  189 (294)
Q Consensus       120 ---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~-----~i~i  189 (294)
                         .+..|++||+.+...                     ..+.....|...+..+.|+  ++.|++++.++     .|.+
T Consensus       230 ~~~~~~~l~~~d~~~~~~---------------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~  288 (706)
T 2z3z_A          230 TPSHHVTVGIYHLATGKT---------------------VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNA  288 (706)
T ss_dssp             SCCCEEEEEEEETTTTEE---------------------EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEE
T ss_pred             CCCCeeEEEEEECCCCce---------------------EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEE
Confidence               346788899876321                     0111112466778889997  77888877765     8999


Q ss_pred             ecCCCCCCCCCCCCceeeeeeecC--CCCeeEEEEcc--cCCcceEEEEcCCCeEEEEecc-CCCceeeeeccccccCCC
Q 022590          190 WEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSC--DFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLSHAQSKSP  264 (294)
Q Consensus       190 wd~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~--~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~  264 (294)
                      ||+.+++.      ...+......  ...+..+.|+|  ++  .+++++..+|.+++|++. +++  ....+.  .+...
T Consensus       289 ~d~~~g~~------~~~~~~~~~~~~~~~~~~~~~sp~~dg--~~l~~~~~~g~~~l~~~~~~~~--~~~~l~--~~~~~  356 (706)
T 2z3z_A          289 YDAETGRF------VRTLFVETDKHYVEPLHPLTFLPGSNN--QFIWQSRRDGWNHLYLYDTTGR--LIRQVT--KGEWE  356 (706)
T ss_dssp             EETTTCCE------EEEEEEEECSSCCCCCSCCEECTTCSS--EEEEEECTTSSCEEEEEETTSC--EEEECC--CSSSC
T ss_pred             EECCCCce------eeEEEEccCCCeECccCCceeecCCCC--EEEEEEccCCccEEEEEECCCC--EEEecC--CCCeE
Confidence            99987631      1111111111  11245689999  88  588899999999999887 332  233333  44566


Q ss_pred             eEE-EEEccCCCEEEEec-cCC----cEEEEecC
Q 022590          265 IRQ-TAMSYDGSTILSCC-EDG----AIWRWDAI  292 (294)
Q Consensus       265 v~~-~~~s~~~~~l~s~~-~dg----~i~vw~~~  292 (294)
                      +.. ++|+|+|+.|+.++ .++    .|+.||+.
T Consensus       357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~  390 (706)
T 2z3z_A          357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIK  390 (706)
T ss_dssp             EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETT
T ss_pred             EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcC
Confidence            776 79999999876554 444    56666654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=9.9e-21  Score=148.00  Aligned_cols=250  Identities=9%  Similarity=-0.041  Sum_probs=159.7

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcC-Cccccceeccc-CcceEEEEeCCCCCc--eEEEee------------
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVS-NEKLHKSFVGH-GDSINEIRTQPLKPS--LVVSAS------------   73 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~--~l~s~~------------   73 (294)
                      .+..++|+  |+|+ +|++++.+ .|.+|++. +++........ .+.+..++|+| +++  +++++.            
T Consensus        41 ~~~~~a~s--pdg~-~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           41 PISWMTFD--HERK-NIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             CCSEEEEC--TTSS-EEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCcEEEEC--CCCC-EEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceee
Confidence            56677776  9998 88888887 99999997 77654433211 12356799999 777  355553            


Q ss_pred             -CCCcEEEEEcC-CCceEEEeecc-CCCCCceeEEEEecCCCceEEeee-cCCcEEEEecc-ccccccccceeecCCCCC
Q 022590           74 -KDESVRLWNVQ-TGICILIFAGA-GGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMK-EFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        74 -~dg~i~vwd~~-~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~-~~~~~~~~~~~~~~~~~~  148 (294)
                       .+|++.+|++. .++....+... ..+...+.+++|+| ++++++++. .++.|++||+. ++..              
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~--------------  180 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEV--------------  180 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCE--------------
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCE--------------
Confidence             68999999997 46554433311 02456799999999 777777665 46799999997 4211              


Q ss_pred             CCCceeeeceEEee--cCCCceeeccee--cceEEEeeC-CCeEEEecCCC--CCCCCCCCCceeeeeeecC----CC--
Q 022590          149 FPTKYVQFPVFIAS--VHSNYVDCNRWL--GDFILSKSV-DNEIVLWEPKM--KEQSPGEGTADILQKYPVP----EC--  215 (294)
Q Consensus       149 ~~~~~~~~~~~~~~--~~~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~----~~--  215 (294)
                             .......  .|...+..+.|+  ++++++++. ++.|.+|++..  ++...   ....+..++..    ..  
T Consensus       181 -------~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~---~~~~~~~~~~~~~g~~~~~  250 (365)
T 1jof_A          181 -------ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVY---THHSFPLIPPGIPDRDPET  250 (365)
T ss_dssp             -------EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE---EEEEEESSCTTCCCBCTTT
T ss_pred             -------EEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEE---ccceEEcCCCCcCCccccc
Confidence                   0111122  234567778886  777777664 78999997653  32100   00011111111    11  


Q ss_pred             ----CeeEEE-EcccCCcceEEEEcC-CC-----eEEEEecc-CCCceeee-eccccccCCCeEEEEEcc---CCCEEEE
Q 022590          216 ----DIWFIK-FSCDFHYNAAAIGNR-EG-----KIFVWELQ-SSPPVLIA-RLSHAQSKSPIRQTAMSY---DGSTILS  279 (294)
Q Consensus       216 ----~i~~~~-~~~~~~~~~l~~~~~-dg-----~i~i~d~~-~~~~~~~~-~~~~~~~~~~v~~~~~s~---~~~~l~s  279 (294)
                          .+..++ |+|+++  +|+++.. ++     .|.+|++. +++..... ...  .+...+..++|+|   +|++|++
T Consensus       251 ~~~~~~~~i~~~spdG~--~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~--~~~~~~~~~a~sp~~~dg~~l~v  326 (365)
T 1jof_A          251 GKGLYRADVCALTFSGK--YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP--TPTSGGHSNAVSPCPWSDEWMAI  326 (365)
T ss_dssp             SSBSEEEEEEEECTTSS--EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE--CSSCCTTCCCEEECTTCTTEEEE
T ss_pred             ccccccccEEEECCCCC--EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeee--cCCCCcccceecCCCcCCCEEEE
Confidence                477899 999995  5555543 22     89999996 44422211 121  2234467789999   8999999


Q ss_pred             eccC-CcEEEEecCC
Q 022590          280 CCED-GAIWRWDAIP  293 (294)
Q Consensus       280 ~~~d-g~i~vw~~~~  293 (294)
                      ++.+ +.|.+|+++.
T Consensus       327 ~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          327 TDDQEGWLEIYRWKD  341 (365)
T ss_dssp             ECSSSCEEEEEEEET
T ss_pred             EEcCCCeEEEEEEch
Confidence            8865 8999999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=1.4e-21  Score=171.95  Aligned_cols=229  Identities=13%  Similarity=-0.012  Sum_probs=174.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc-----------cCcceEEEEeC-CCCCceEEEeeCCCc
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-----------HGDSINEIRTQ-PLKPSLVVSASKDES   77 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----------h~~~v~~~~~~-~~~~~~l~s~~~dg~   77 (294)
                      .+...+|+  |+|+ +|+.+ .++.|.+|++...+ +..+..           |...+.+++|+ | +++.|++++ ++.
T Consensus       246 ~~~~~~~S--pDG~-~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p-dG~~la~~~-~~~  318 (1045)
T 1k32_A          246 DYYPRHLN--TDGR-RILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPL-DGDLIAFVS-RGQ  318 (1045)
T ss_dssp             SSCEEEEE--ESSS-CEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEEC-GGGCEEEEE-TTE
T ss_pred             CcceeeEc--CCCC-EEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeecCC-CCCEEEEEE-cCE
Confidence            35667777  8998 77776 58999999984443 334444           44579999999 9 888888887 789


Q ss_pred             EEEEEcCCCceEEEeeccCCCCC-ceeEEEEecCCCceEEeeecCCcEE-EEeccccccccccceeecCCCCCCCCceee
Q 022590           78 VRLWNVQTGICILIFAGAGGHRN-EVLSVDFHPSDIYRIASCGMDNTVK-IWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~-~v~~l~~~~~~~~~l~~~~~dg~i~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      |.+|++..++... +.   .|.. .+..++|+  ++..|+.++.++.+. +||+...                       
T Consensus       319 i~~~~~~~~~~~~-~~---~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~-----------------------  369 (1045)
T 1k32_A          319 AFIQDVSGTYVLK-VP---EPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG-----------------------  369 (1045)
T ss_dssp             EEEECTTSSBEEE-CS---CCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC-----------------------
T ss_pred             EEEEcCCCCceEE-cc---CCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCC-----------------------
Confidence            9999998776544 33   4777 89999999  667788888788888 8888762                       


Q ss_pred             eceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590          156 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      . ...+..|...+..++|+  +++|++++.++.|++||+.+++         .......+...+..++|+|++  .+|++
T Consensus       370 ~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~---------~~~~~~~~~~~v~~~~~SpDG--~~la~  437 (1045)
T 1k32_A          370 K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK---------PTVIERSREAMITDFTISDNS--RFIAY  437 (1045)
T ss_dssp             C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------EEEEEECSSSCCCCEEECTTS--CEEEE
T ss_pred             C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc---------eEEeccCCCCCccceEECCCC--CeEEE
Confidence            1 12223667788888887  8899999999999999998765         334444677778899999999  46777


Q ss_pred             EcCC----------CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          234 GNRE----------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       234 ~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ++.+          +.|++||+.+++   ...+.  .+...+..++|+|+|++|++++.++...+|+.
T Consensus       438 ~~~~~~~~~~~~~~~~i~l~d~~~g~---~~~l~--~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          438 GFPLKHGETDGYVMQAIHVYDMEGRK---IFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             EEEECSSTTCSCCEEEEEEEETTTTE---EEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             EecCccccccCCCCCeEEEEECCCCc---EEEee--CCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence            6654          489999998864   23333  55567889999999999999998888777764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.89  E-value=3.4e-20  Score=144.03  Aligned_cols=243  Identities=9%  Similarity=0.065  Sum_probs=151.0

Q ss_pred             EEEEee----cCCeEEEEEcC--Cccccc-eecccCcceEEEEeCCCCCceEEEeeC---CCcEEEEEcCCCce--EEEe
Q 022590           25 FLVAGG----INGIIRVIDVS--NEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASK---DESVRLWNVQTGIC--ILIF   92 (294)
Q Consensus        25 ~l~~~~----~dg~i~iw~~~--~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~--~~~~   92 (294)
                      .+++|+    .++.|.+|.++  +++... ....+...+..++|+| +++ |++++.   ++.|.+|++.+++.  +..+
T Consensus         4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~sp-dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~   81 (347)
T 3hfq_A            4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSA-KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV   81 (347)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECT-TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEcc-CCe-EEEEEecCCCceEEEEEecCCcEEEeeee
Confidence            455553    35568887765  444332 2334567788999999 777 554443   68999999976653  3332


Q ss_pred             eccCCCCCceeEEEEecCCCceEEeee-cCCcEEEEecccccc-ccccceeecCCCCCCCCceeeeceEEeecCCCceee
Q 022590           93 AGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWT-YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC  170 (294)
Q Consensus        93 ~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (294)
                      .   .+...+..++|+| ++.+|++++ .++.+.+|++..... ............          +.  ...+...+.+
T Consensus        82 ~---~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~----------p~--~~~~~~~~~~  145 (347)
T 3hfq_A           82 V---APGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHG----------PR--PEQDGSHIHY  145 (347)
T ss_dssp             E---EESCCCSEEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCC----------SS--TTCSSCCEEE
T ss_pred             e---cCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCC----------CC--ccccCCCceE
Confidence            3   3677889999999 777777776 789999999964111 000000000000          00  0012234667


Q ss_pred             ccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          171 NRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       171 ~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      ++|+  ++++++...++.|.+||+....      .......... ....+..++|+|+++ .+++++..++.|.+|++..
T Consensus       146 ~~~spdg~l~v~~~~~~~v~~~~~~~~g------~~~~~~~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          146 TDLTPDNRLAVIDLGSDKVYVYNVSDAG------QLSEQSVLTMEAGFGPRHLVFSPDGQ-YAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEEECTTS------CEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEEET
T ss_pred             EEECCCCcEEEEeCCCCEEEEEEECCCC------cEEEeeeEEcCCCCCCceEEECCCCC-EEEEEeCCCCEEEEEEecC
Confidence            7776  6666666678899999998321      1112222222 234677899999995 2455567889999999985


Q ss_pred             --CCceeeeeccccc----cCCCeEEEEEccCCCEEE-EeccCCcEEEEecC
Q 022590          248 --SPPVLIARLSHAQ----SKSPIRQTAMSYDGSTIL-SCCEDGAIWRWDAI  292 (294)
Q Consensus       248 --~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~-s~~~dg~i~vw~~~  292 (294)
                        ++...........    ....+..++|+|+|++|+ +...++.|.+|++.
T Consensus       219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred             CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence              3322222222111    114588999999999875 55568999999986

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.89  E-value=3e-19  Score=134.92  Aligned_cols=239  Identities=13%  Similarity=0.097  Sum_probs=167.0

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec------ccCcceEEEEeCCCCCceEEEeeC-CCcEE
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV------GHGDSINEIRTQPLKPSLVVSASK-DESVR   79 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~   79 (294)
                      +-....+++++  ++|+ ++++...++.|.+||.+ ++....+.      ++...+..+++.+.++.++++... ++.|.
T Consensus        28 ~~~~p~~v~~~--~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           28 QFTEPSGVAVN--AQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             CBSCEEEEEEC--TTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             ccCCCceEEEC--CCCC-EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            44567888886  8898 88888889999999976 55555543      244578999994327777766643 78999


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      +|| .+++.+..+..  .+...+.+++++| +++++++...++.|.+||....                        ...
T Consensus       104 ~~d-~~g~~~~~~~~--~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~------------------------~~~  155 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGA--TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGN------------------------VLH  155 (286)
T ss_dssp             EEC-TTSCEEEEECT--TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSC------------------------EEE
T ss_pred             EEC-CCCcEEEEecC--ccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCC------------------------EEE
Confidence            999 56777766642  3446789999999 7787887777899999996541                        011


Q ss_pred             Ee--ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC--CCCeeEEEEcccCCcceEEE
Q 022590          160 IA--SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP--ECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       160 ~~--~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~l~~  233 (294)
                      .+  ..+...+..++++  ++++++...++.|++||....          .+..+...  ...+..+++++++  .++++
T Consensus       156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~----------~~~~~~~~g~~~~p~~i~~d~~G--~l~v~  223 (286)
T 1q7f_A          156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNG--EILIA  223 (286)
T ss_dssp             EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTC--CEEEE
T ss_pred             EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC----------EEEEEccCCccCCCcEEEECCCC--CEEEE
Confidence            11  1233456777776  667777777899999997432          23333332  2567899999988  57777


Q ss_pred             EcCCC-eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          234 GNREG-KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       234 ~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ...++ .|.+||... +  ....+........+.+++++|+|+++++ +.|+.|++|++..
T Consensus       224 ~~~~~~~i~~~~~~g-~--~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          224 DNHNNFNLTIFTQDG-Q--LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             ECSSSCEEEEECTTS-C--EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             eCCCCEEEEEECCCC-C--EEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            77675 999999643 3  2223321122234789999999987777 5799999999854

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.87  E-value=4.5e-19  Score=136.55  Aligned_cols=256  Identities=12%  Similarity=0.066  Sum_probs=172.0

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecC------------------------CeEEEEEcCCccccceec-ccCcceEEEEe
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGIN------------------------GIIRVIDVSNEKLHKSFV-GHGDSINEIRT   61 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~d------------------------g~i~iw~~~~~~~~~~~~-~h~~~v~~~~~   61 (294)
                      .-+.+.+++++  |+|+ ++++...+                        +.|.+||..+++....+. ++-.....+++
T Consensus        22 ~l~~v~~va~d--~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~   98 (329)
T 3fvz_A           22 LPGQVSGVALD--SKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI   98 (329)
T ss_dssp             CCSCEEEEEEC--TTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE
T ss_pred             ecCCceEEEEC--CCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE
Confidence            34678899987  9998 77777776                        479999998888776554 34457899999


Q ss_pred             CCCCCceEEEeeCCCcEEEEEcCCCc-eEEEeecc------CCCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccc
Q 022590           62 QPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGA------GGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFW  133 (294)
Q Consensus        62 ~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~------~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~  133 (294)
                      +| +++++++...++.|++||..... .+..+...      .++-..+..++++|.++.++++.+ .++.|++|+.... 
T Consensus        99 d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~-  176 (329)
T 3fvz_A           99 DT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGK-  176 (329)
T ss_dssp             CT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSC-
T ss_pred             CC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCC-
Confidence            99 88888888889999999985442 44444210      134457899999985677777775 6899999995431 


Q ss_pred             cccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee
Q 022590          134 TYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY  210 (294)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  210 (294)
                      ...  .+........           ....+-.....++++   +.++++...++.|++||..+++         .+..+
T Consensus       177 ~~~--~~~~~g~~~~-----------~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~---------~~~~~  234 (329)
T 3fvz_A          177 FVT--QWGEESSGSS-----------PRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE---------FVREI  234 (329)
T ss_dssp             EEE--EECEECCSSS-----------CCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC---------EEEEE
T ss_pred             EEE--EeccCCCCCC-----------CCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc---------EEEEE
Confidence            100  0000000000           000122335677775   5667777788999999998554         34444


Q ss_pred             e--cCCCCeeEEEEcc------cCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc
Q 022590          211 P--VPECDIWFIKFSC------DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       211 ~--~~~~~i~~~~~~~------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                      .  .....+..++++|      ++  ...++...+..|++|+..+++...... ....+...+..++++|+|.++++...
T Consensus       235 ~~~~~~~~~~~~~~~pg~~~~~~g--~~~v~~~~~~~v~~~~~~~g~~~~~~~-~~~~~~~~p~~ia~~~dG~lyvad~~  311 (329)
T 3fvz_A          235 KHASFGRNVFAISYIPGFLFAVNG--KPYFGDQEPVQGFVMNFSSGEIIDVFK-PVRKHFDMPHDIVASEDGTVYIGDAH  311 (329)
T ss_dssp             CCTTTTTCEEEEEEETTEEEEEEC--CCCTTCSCCCCEEEEETTTCCEEEEEC-CSSSCCSSEEEEEECTTSEEEEEESS
T ss_pred             eccccCCCcceeeecCCEEEEeCC--CEEeccCCCcEEEEEEcCCCeEEEEEc-CCCCccCCeeEEEECCCCCEEEEECC
Confidence            2  3445678888988      22  122223345589999998886433221 11245567899999999988888889


Q ss_pred             CCcEEEEecC
Q 022590          283 DGAIWRWDAI  292 (294)
Q Consensus       283 dg~i~vw~~~  292 (294)
                      ++.|++|++.
T Consensus       312 ~~~I~~~~~~  321 (329)
T 3fvz_A          312 TNTVWKFTLT  321 (329)
T ss_dssp             SCCEEEEEEE
T ss_pred             CCEEEEEeCC
Confidence            9999999975

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=7.8e-22  Score=167.58  Aligned_cols=252  Identities=10%  Similarity=0.083  Sum_probs=159.8

Q ss_pred             EEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCc---ceEEEEeCCCCCceEEEeeC---------CCcEEE
Q 022590           13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGD---SINEIRTQPLKPSLVVSASK---------DESVRL   80 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~~~---------dg~i~v   80 (294)
                      .++|+  |+|+ +++++ .|+.|++||+.+++....+..|..   .+.+++|+| ++++|++++.         ++.|++
T Consensus        20 ~~~~s--~dg~-~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWI--SGQE-YLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEES--SSSE-EEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEEC--CCCe-EEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceEEEE
Confidence            56776  9996 66655 699999999999988777766544   499999999 8899988876         789999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ||+.+++.+....    ....+..++|+| +++.|+.+. ++.|++||+.++.....   ...           ......
T Consensus        95 ~d~~~g~~~~~~~----l~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l---~~~-----------~~~~~v  154 (719)
T 1z68_A           95 YDLSNGEFVRGNE----LPRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQI---TFN-----------GRENKI  154 (719)
T ss_dssp             EETTTTEECCSSC----CCSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEEC---CCC-----------CBTTTE
T ss_pred             EECCCCcccccee----cCcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEE---ecC-----------CCcCCe
Confidence            9999887632111    234688999999 888888875 78999999987432110   000           000001


Q ss_pred             eecCCCce---------eeccee--cceEEEeeCCC----------------------------------eEEEecCCCC
Q 022590          161 ASVHSNYV---------DCNRWL--GDFILSKSVDN----------------------------------EIVLWEPKMK  195 (294)
Q Consensus       161 ~~~~~~~i---------~~~~~~--~~~l~~~~~d~----------------------------------~i~iwd~~~~  195 (294)
                      +.++...|         .++.|+  |++|+.++.|.                                  .|++||+.++
T Consensus       155 ~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~  234 (719)
T 1z68_A          155 FNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP  234 (719)
T ss_dssp             EESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH
T ss_pred             EcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC
Confidence            12333222         477786  78888877552                                  7889998865


Q ss_pred             CCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC----CeEEEEe----ccCCCceeeeeccccccCCCeE-
Q 022590          196 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE----GKIFVWE----LQSSPPVLIARLSHAQSKSPIR-  266 (294)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~~~~~~~~v~-  266 (294)
                      +..... .......+..+...+..++|+|++  .++++....    ..|.+||    +.+++...........+...+. 
T Consensus       235 ~~~~~~-~~~~~~~~~~~~~~~~~~~~SpD~--~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~  311 (719)
T 1z68_A          235 AYVGPQ-EVPVPAMIASSDYYFSWLTWVTDE--RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGG  311 (719)
T ss_dssp             HHHCCE-ECCCCHHHHTSCEEEEEEEESSSS--EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSS
T ss_pred             Ccccee-EccCCccCCCCcceEEEeEEeCCC--eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEcc
Confidence            420000 000001122355668899999996  466663322    3488888    6665432222100013445555 


Q ss_pred             ----EEEEccCCCEEEE--eccCCc--EEEEecC
Q 022590          267 ----QTAMSYDGSTILS--CCEDGA--IWRWDAI  292 (294)
Q Consensus       267 ----~~~~s~~~~~l~s--~~~dg~--i~vw~~~  292 (294)
                          .++|+|||+.|+.  +..+|.  |++||+.
T Consensus       312 ~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~  345 (719)
T 1z68_A          312 FFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDT  345 (719)
T ss_dssp             SSCCCCEECTTSSCEEEEEECTTSCEEEEEESSC
T ss_pred             ccCCccEECCCCCeEEEEEEccCCceEEEEEECC
Confidence                7899999996554  445664  6666654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.86  E-value=2.3e-20  Score=158.81  Aligned_cols=250  Identities=12%  Similarity=0.172  Sum_probs=158.6

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcc-----eEEEEeCCCCCceEEEeeCC-------
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS-----INEIRTQPLKPSLVVSASKD-------   75 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~l~s~~~d-------   75 (294)
                      ......++|+  |+|+ +++++  ||.|++||+.+++....+.+|...     ...++||| ++++|+.++.+       
T Consensus        16 ~~~~~~~~w~--~dg~-~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           16 RLKLYSLRWI--SDHE-YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CCCCCCEEEC--SSSE-EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSC
T ss_pred             cccccccEEC--CCCc-EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEEc
Confidence            3456788997  9997 88886  999999999999887777776543     24588999 88999988876       


Q ss_pred             --CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           76 --ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        76 --g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                        +.+.+||+.+++... +.   .|...+...+|+| +++.||.+ .|+.|++|++..+....   ++..+         
T Consensus        90 ~~~~~~~~d~~~~~~~~-l~---~~~~~~~~~~~SP-dG~~la~~-~~~~i~~~~~~~~~~~~---lt~~g---------  151 (740)
T 4a5s_A           90 YTASYDIYDLNKRQLIT-EE---RIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPSYR---ITWTG---------  151 (740)
T ss_dssp             EEEEEEEEETTTTEECC-SS---CCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCCEE---CCSCC---------
T ss_pred             cceEEEEEECCCCcEEE-cc---cCCCcceeeEECC-CCCEEEEE-ECCeEEEEECCCCceEE---EcCCC---------
Confidence              556799999887543 33   4778899999999 88888887 47899999997643211   00000         


Q ss_pred             eeeceEEeecCCCc---------eeeccee--cceEEEeeCCC------------------------------------e
Q 022590          154 VQFPVFIASVHSNY---------VDCNRWL--GDFILSKSVDN------------------------------------E  186 (294)
Q Consensus       154 ~~~~~~~~~~~~~~---------i~~~~~~--~~~l~~~~~d~------------------------------------~  186 (294)
                        .....+.++...         ...+.|+  |+.|+..+.|.                                    .
T Consensus       152 --~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~  229 (740)
T 4a5s_A          152 --KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVK  229 (740)
T ss_dssp             --BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEE
T ss_pred             --CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeE
Confidence              000011122211         1234554  56666554221                                    4


Q ss_pred             EEEecCCC---CCCCCCCCCceeeeeee------cCCCCeeEEEEcccCCcceEEEE----cCCCeEEEEeccCCC----
Q 022590          187 IVLWEPKM---KEQSPGEGTADILQKYP------VPECDIWFIKFSCDFHYNAAAIG----NREGKIFVWELQSSP----  249 (294)
Q Consensus       187 i~iwd~~~---~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~----  249 (294)
                      |++||+.+   ++..       ....+.      .+...+..++|+|+++  .++..    ..+..|++||+.+++    
T Consensus       230 l~v~d~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~wspdg~--~~~~~~~r~~~~~~i~~~d~~tg~~~~~  300 (740)
T 4a5s_A          230 FFVVNTDSLSSVTNA-------TSIQITAPASMLIGDHYLCDVTWATQER--ISLQWLRRIQNYSVMDICDYDESSGRWN  300 (740)
T ss_dssp             EEEEETTSCCSSSCC-------CEEEECCCHHHHTSCEEEEEEEEEETTE--EEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred             EEEEECCCCCCCCcc-------eEEEecCCccCCCCCeEEEEEEEeCCCe--EEEEEeCCCCCEEEEEEEECCCCccccc
Confidence            77788776   4210       011222      2455688899999994  44433    233479999999886    


Q ss_pred             ceeeeeccccccCCCeE-----EEEEccCCCEEE-Eec-cCC--cEEEEecC
Q 022590          250 PVLIARLSHAQSKSPIR-----QTAMSYDGSTIL-SCC-EDG--AIWRWDAI  292 (294)
Q Consensus       250 ~~~~~~~~~~~~~~~v~-----~~~~s~~~~~l~-s~~-~dg--~i~vw~~~  292 (294)
                      ......+....+...|.     ..+|+|||+.|+ ..+ .+|  .|++||+.
T Consensus       301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred             eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECC
Confidence            22222221113333333     688999999877 554 444  47777764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=1.3e-17  Score=130.17  Aligned_cols=253  Identities=9%  Similarity=0.025  Sum_probs=150.4

Q ss_pred             EEEEee----cCCeEEEEEcC--CccccceecccCcceEEEEeCCCCCceEEEeeCC----CcEEEEEcCC--CceEEEe
Q 022590           25 FLVAGG----INGIIRVIDVS--NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD----ESVRLWNVQT--GICILIF   92 (294)
Q Consensus        25 ~l~~~~----~dg~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~--~~~~~~~   92 (294)
                      +++.|+    .++.|.+|.++  +++.......+...+..++|+| ++++|++++.+    +.|.+|++..  ++. ..+
T Consensus        15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~-~~~   92 (361)
T 3scy_A           15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTL-HLL   92 (361)
T ss_dssp             EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEE-EEE
T ss_pred             EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcE-EEe
Confidence            566664    45689999774  4544332222677888999999 88888888875    7999999875  332 222


Q ss_pred             eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecc
Q 022590           93 AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR  172 (294)
Q Consensus        93 ~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  172 (294)
                      .....+......+++ . +..++++...++.+.+|++...................         ......+...+.++.
T Consensus        93 ~~~~~~~~~p~~~~~-d-g~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~  161 (361)
T 3scy_A           93 NTQKTMGADPCYLTT-N-GKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG---------PDKERQTMPHLHCVR  161 (361)
T ss_dssp             EEEECSSSCEEEEEE-C-SSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC---------SCTTTCSSCCEEEEE
T ss_pred             eEeccCCCCcEEEEE-C-CCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC---------CCccccCCCcceEEE
Confidence            211134556777777 2 44444444578999999997532111110000000000         000011223356677


Q ss_pred             ee--cceEEEee-CCCeEEEecCCCCCCCCCCCCcee----eeeeecCCCCeeEEEEcccCCcceEEEEc-CCCeEEEEe
Q 022590          173 WL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADI----LQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWE  244 (294)
Q Consensus       173 ~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d  244 (294)
                      |+  +++++++. .++.|.+|++..............    ..........+..++|+|+++  ++++++ .++.|.+|+
T Consensus       162 ~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~--~l~v~~~~~~~v~v~~  239 (361)
T 3scy_A          162 ITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK--FAYLINEIGGTVIAFR  239 (361)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS--EEEEEETTTCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC--EEEEEcCCCCeEEEEE
Confidence            76  66555544 588999998875431000000000    111223345678899999994  555544 789999999


Q ss_pred             ccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEecc--CCcEEEEecC
Q 022590          245 LQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCE--DGAIWRWDAI  292 (294)
Q Consensus       245 ~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~--dg~i~vw~~~  292 (294)
                      +.+++......+. ...+......++|+|||++|+++..  ++.|.+|++.
T Consensus       240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~  290 (361)
T 3scy_A          240 YADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD  290 (361)
T ss_dssp             EETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred             ecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence            9876533333332 2233455789999999999877655  4899999985

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=3.7e-19  Score=140.26  Aligned_cols=237  Identities=11%  Similarity=0.029  Sum_probs=153.4

Q ss_pred             EEEeecCCCceEEEEeec-CC--eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590           14 VSWACNVDGIPFLVAGGI-NG--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL   90 (294)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~   90 (294)
                      .+|+  |||+ +|+.++. +|  .|.+||+.+++......++...+..++|+| +++.|+.++.++.|.+||+.+++...
T Consensus        41 ~~~S--pDg~-~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~  116 (388)
T 3pe7_A           41 KCFT--RDGS-KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSP-DDDALFYVKDGRNLMRVDLATLEENV  116 (388)
T ss_dssp             CCBC--TTSC-EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECT-TSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             ccCC--CCCC-EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcC-CCCEEEEEeCCCeEEEEECCCCccee
Confidence            5666  9999 7777776 66  488889999888777777776666788999 88999999999999999999998776


Q ss_pred             EeeccCCCCCceeEEE--EecCCCceEEe----------------------eecCCcEEEEeccccccccccceeecCCC
Q 022590           91 IFAGAGGHRNEVLSVD--FHPSDIYRIAS----------------------CGMDNTVKIWSMKEFWTYVEKSFTWTDLP  146 (294)
Q Consensus        91 ~~~~~~~~~~~v~~l~--~~~~~~~~l~~----------------------~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  146 (294)
                      .+.   .+...+....  ++| ++.+++.                      ...+..|.+||+.++.             
T Consensus       117 ~~~---~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~-------------  179 (388)
T 3pe7_A          117 VYQ---VPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE-------------  179 (388)
T ss_dssp             EEE---CCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC-------------
T ss_pred             eee---chhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc-------------
Confidence            665   3555554444  477 7776663                      2244678889988632             


Q ss_pred             CCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCC------CeEEEecCCCCCCCCCCCCceeeeeeecCC--C
Q 022590          147 SKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVPE--C  215 (294)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~  215 (294)
                                 ...+..+...+..+.|+   ++.|+....+      ..|.++|......          ..+..+.  .
T Consensus       180 -----------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----------~~l~~~~~~~  238 (388)
T 3pe7_A          180 -----------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM----------RKVKTHAEGE  238 (388)
T ss_dssp             -----------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC----------EESCCCCTTE
T ss_pred             -----------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce----------EEeeeCCCCc
Confidence                       12233345566677775   4566665543      3688888765431          1122222  2


Q ss_pred             CeeEEEEcccCCcceEEEEcCCC----eEEEEeccCCCceeeeeccccccC-CCeEEEEEccCCCEEEEe---------c
Q 022590          216 DIWFIKFSCDFHYNAAAIGNREG----KIFVWELQSSPPVLIARLSHAQSK-SPIRQTAMSYDGSTILSC---------C  281 (294)
Q Consensus       216 ~i~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~---------~  281 (294)
                      .+....|+|+++ .+++.+..++    .|++||+.+++...........+. .....++|+|||+.|+..         .
T Consensus       239 ~~~~~~~spdg~-~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~  317 (388)
T 3pe7_A          239 SCTHEFWVPDGS-ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE  317 (388)
T ss_dssp             EEEEEEECTTSS-CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred             ccccceECCCCC-EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence            466789999996 2323333222    399999999875444333210000 001223799999988854         4


Q ss_pred             cCCcEEEEecCC
Q 022590          282 EDGAIWRWDAIP  293 (294)
Q Consensus       282 ~dg~i~vw~~~~  293 (294)
                      .+..|++||+++
T Consensus       318 ~~~~i~~~d~~~  329 (388)
T 3pe7_A          318 NDPFLYVFNMKN  329 (388)
T ss_dssp             CCCEEEEEETTT
T ss_pred             CCCEEEEEeccC
Confidence            566899999864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=2.3e-19  Score=152.49  Aligned_cols=244  Identities=10%  Similarity=0.027  Sum_probs=155.2

Q ss_pred             eEEEEEeecCCCceEEEEeec---------CCeEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590           11 FYTVSWACNVDGIPFLVAGGI---------NGIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      |.+++|+  |||+ +|++++.         ++.|++||+.+++.+  ..+   ...+..++|+| +++.|+.+. ++.|+
T Consensus        62 ~~~~~~S--pDg~-~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~  133 (719)
T 1z68_A           62 ASNYGLS--PDRQ-FVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSP-VGSKLAYVY-QNNIY  133 (719)
T ss_dssp             CSEEEEC--TTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECS-STTCEEEEE-TTEEE
T ss_pred             eeeEEEC--CCCC-eEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECC-CCCEEEEEE-CCeEE
Confidence            7788887  9999 8888776         789999999988763  222   25689999999 888888875 78999


Q ss_pred             EEEcCCCceEEEeeccCCCCCce-----------------eEEEEecCCCceEEeeecCC--------------------
Q 022590           80 LWNVQTGICILIFAGAGGHRNEV-----------------LSVDFHPSDIYRIASCGMDN--------------------  122 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v-----------------~~l~~~~~~~~~l~~~~~dg--------------------  122 (294)
                      +|++.+++.......  ++...|                 .+++|+| +++.|++++.|.                    
T Consensus       134 ~~~~~~g~~~~l~~~--~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~  210 (719)
T 1z68_A          134 LKQRPGDPPFQITFN--GRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTI  210 (719)
T ss_dssp             EESSTTSCCEECCCC--CBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEE
T ss_pred             EEeCCCCCcEEEecC--CCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccce
Confidence            999988876543321  222222                 5899999 888898887652                    


Q ss_pred             --------------cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCC--
Q 022590          123 --------------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD--  184 (294)
Q Consensus       123 --------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d--  184 (294)
                                    .|++||+.+........               ......+..|...+..++|+  +.++++....  
T Consensus       211 ~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~  275 (719)
T 1z68_A          211 NIPYPKAGAKNPVVRIFIIDTTYPAYVGPQE---------------VPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQ  275 (719)
T ss_dssp             EEECCBTTSCCCEEEEEEEESSCHHHHCCEE---------------CCCCHHHHTSCEEEEEEEESSSSEEEEEEEESST
T ss_pred             eecCCCCCCCCCeeEEEEEECCCCCccceeE---------------ccCCccCCCCcceEEEeEEeCCCeEEEEEecccc
Confidence                          56677776532100000               00001133577788889897  5555553322  


Q ss_pred             --CeEEEec----CCCCCCCCCCCCceeee-eeecCCCCee-----EEEEcccCCcceEEEEcCCC--eEEEEeccCCCc
Q 022590          185 --NEIVLWE----PKMKEQSPGEGTADILQ-KYPVPECDIW-----FIKFSCDFHYNAAAIGNREG--KIFVWELQSSPP  250 (294)
Q Consensus       185 --~~i~iwd----~~~~~~~~~~~~~~~~~-~~~~~~~~i~-----~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~  250 (294)
                        ..|.+||    +.+++..      .... ....+...+.     .+.|+|+++..+++++..+|  .|.+||+.+++.
T Consensus       276 ~~~~l~~~d~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~  349 (719)
T 1z68_A          276 NVSVLSICDFREDWQTWDCP------KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA  349 (719)
T ss_dssp             TEEEEEEEEECSSSSSEECC------GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC
T ss_pred             CeEEEEEEcccCCCCCCceE------EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce
Confidence              2488899    6655421      1110 0123344444     67899999632333455555  566677766542


Q ss_pred             eeeeeccccccCCCeEEEEEccCCCEEEEeccC-----CcEEEEecC
Q 022590          251 VLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRWDAI  292 (294)
Q Consensus       251 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~vw~~~  292 (294)
                         ..+.  .+...+..+.++ +++.|+..+.+     +..++|.+.
T Consensus       350 ---~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~  390 (719)
T 1z68_A          350 ---IQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS  390 (719)
T ss_dssp             ---EECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred             ---Eecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence               2232  334457777777 77777665544     788899764

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=6.3e-19  Score=146.22  Aligned_cols=225  Identities=10%  Similarity=0.055  Sum_probs=155.9

Q ss_pred             ceeEEEEEeecCCCceEEEEeec---CCeEEEEEcCC---ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGI---NGIIRVIDVSN---EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      ..+..++|+  || + ++++++.   +...++|.+..   +... .+..+ ..+...+|+|+....+++.+.++.+.+||
T Consensus        65 ~~~~~~~~s--pd-~-~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d  138 (582)
T 3o4h_A           65 NSVLDPHYG--VG-R-VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYA  138 (582)
T ss_dssp             SEECEECTT--CS-E-EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEE
T ss_pred             cccccccCC--CC-e-EEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEE
Confidence            588899997  88 6 7887765   45566665533   2222 33322 23446678873333344444445556999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC----CcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      +.+++......    +..  .+++|+| +++.|++++.+    +.|++||+.++.                        .
T Consensus       139 ~~~g~~~~l~~----~~~--~~~~~sp-DG~~la~~~~~~~~~~~i~~~d~~~g~------------------------~  187 (582)
T 3o4h_A          139 LDGGGLRELAR----LPG--FGFVSDI-RGDLIAGLGFFGGGRVSLFTSNLSSGG------------------------L  187 (582)
T ss_dssp             EETTEEEEEEE----ESS--CEEEEEE-ETTEEEEEEEEETTEEEEEEEETTTCC------------------------C
T ss_pred             ccCCcEEEeec----CCC--ceEEECC-CCCEEEEEEEcCCCCeEEEEEcCCCCC------------------------c
Confidence            99887665554    322  8899999 89999988777    789999988631                        2


Q ss_pred             EEeecCCCceeeccee--cceEEEeeCCC--eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEE--------EcccC
Q 022590          159 FIASVHSNYVDCNRWL--GDFILSKSVDN--EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK--------FSCDF  226 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~--~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~  226 (294)
                      ..+..|...+..++|+  |+.|+++..++  .|++||+.+++.         . ....+...+..+.        |+|++
T Consensus       188 ~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~spdg  257 (582)
T 3o4h_A          188 RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV---------E-DLELPSKDFSSYRPTAITWLGYLPDG  257 (582)
T ss_dssp             EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE---------E-ECCCSCSHHHHHCCSEEEEEEECTTS
T ss_pred             eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE---------E-EccCCCcChhhhhhccccceeEcCCC
Confidence            2456677888889997  88899888888  899999987652         2 3334444455555        99999


Q ss_pred             CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCc---EEEEecC
Q 022590          227 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA---IWRWDAI  292 (294)
Q Consensus       227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~---i~vw~~~  292 (294)
                        .++++++.+|.+++|++  ++.  ...     ....+.+++|+ +++++++++.+..   +++||..
T Consensus       258 --~~~~~~~~~g~~~l~~~--g~~--~~~-----~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          258 --RLAVVARREGRSAVFID--GER--VEA-----PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             --CEEEEEEETTEEEEEET--TEE--ECC-----CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             --cEEEEEEcCCcEEEEEE--CCe--ecc-----CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence              58899999999999999  432  111     12568899999 9999998887754   6666653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=1.4e-17  Score=130.20  Aligned_cols=235  Identities=9%  Similarity=0.041  Sum_probs=148.5

Q ss_pred             EEEEeecC--CeEEEEEc--CCccccce--ec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC-CCceEEEeeccC
Q 022590           25 FLVAGGIN--GIIRVIDV--SNEKLHKS--FV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ-TGICILIFAGAG   96 (294)
Q Consensus        25 ~l~~~~~d--g~i~iw~~--~~~~~~~~--~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~   96 (294)
                      ++++|+..  +.|.+|++  .+++....  .. .....+..++|+| ++++|++++.+ .|.+|++. +++........ 
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-   80 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-   80 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEee-
Confidence            46666653  56888775  44543221  11 2334688999999 88889888887 99999997 77655433210 


Q ss_pred             CCCCceeEEEEecCCCc--eEEeee-------------cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           97 GHRNEVLSVDFHPSDIY--RIASCG-------------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        97 ~~~~~v~~l~~~~~~~~--~l~~~~-------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      .+ +.+.+++|+| +++  +++++.             .+|.+.+|++......                   ...+...
T Consensus        81 ~~-g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~-------------------~~~~~~~  139 (365)
T 1jof_A           81 IG-GHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL-------------------EKNVQNY  139 (365)
T ss_dssp             CC-SSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE-------------------EEEEEEE
T ss_pred             cC-CCCccEEECC-CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC-------------------cceEeeE
Confidence            11 2356789999 777  355553             6899999999741100                   0011111


Q ss_pred             -ecCCCceeeccee--cceEEEee-CCCeEEEecCC-CCCCCCCCCCceeeeeeec--CCCCeeEEEEcccCCcceEEEE
Q 022590          162 -SVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPK-MKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       162 -~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                       ..+...+.++.|+  |++++++. .++.|++||+. +++.       ..+.....  +...+..++|+|+++  +++++
T Consensus       140 ~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~-------~~~~~~~~~~~g~~p~~~~~spdg~--~l~v~  210 (365)
T 1jof_A          140 EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV-------ELVGSVDAPDPGDHPRWVAMHPTGN--YLYAL  210 (365)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE-------EEEEEEECSSTTCCEEEEEECTTSS--EEEEE
T ss_pred             EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE-------EEeeeEecCCCCCCCCEeEECCCCC--EEEEE
Confidence             1244567888887  67777665 46899999997 4431       12233332  356688999999994  56555


Q ss_pred             c-CCCeEEEEeccC--CCcee----eeeccc--cccCC------CeEEEE-EccCCCEEEEeccCC------cEEEEecC
Q 022590          235 N-REGKIFVWELQS--SPPVL----IARLSH--AQSKS------PIRQTA-MSYDGSTILSCCEDG------AIWRWDAI  292 (294)
Q Consensus       235 ~-~dg~i~i~d~~~--~~~~~----~~~~~~--~~~~~------~v~~~~-~s~~~~~l~s~~~dg------~i~vw~~~  292 (294)
                      . .++.|.+|++..  ++...    ...+..  .++..      .+..++ |+|||++|++++.+.      .|.+|++.
T Consensus       211 ~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~  290 (365)
T 1jof_A          211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence            4 578999998763  43211    111211  11222      488999 999999988775432      89999985

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.82  E-value=6.9e-17  Score=120.87  Aligned_cols=237  Identities=10%  Similarity=-0.003  Sum_probs=157.6

Q ss_pred             eeEEEEEeecCCCceEEE-EeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590           10 SFYTVSWACNVDGIPFLV-AGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      ...++++.  ++|+ +++ +...++.|.+|+..+.........+...+.++++.+ +++++++.. ++.|.+||......
T Consensus        25 ~p~~i~~~--~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVD--SAGN-VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEEC--TTCC-EEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEEC--CCCC-EEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE
Confidence            55677776  8898 666 557789999999766543322223345688999999 777666655 88999999866543


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      . .+..  .....+.++++.| ++.++++...++.|.+|+......                       ..........+
T Consensus       100 ~-~~~~--~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-----------------------~~~~~~~~~~p  152 (270)
T 1rwi_B          100 T-VLPF--DGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-----------------------TVLPFTGLNDP  152 (270)
T ss_dssp             E-ECCC--CSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSC-----------------------EECCCCSCCSC
T ss_pred             e-eeec--CCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCcee-----------------------EeeccccCCCc
Confidence            3 2321  2335689999999 778777777788999997554211                       00011122345


Q ss_pred             eeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          169 DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       169 ~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      ..++++  ++++++...++.|.+||......         ..........+..+++.+++  .++++...++.|.+|+..
T Consensus       153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~---------~~~~~~~~~~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~  221 (270)
T 1rwi_B          153 DGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ---------VVLPFTDITAPWGIAVDEAG--TVYVTEHNTNQVVKLLAG  221 (270)
T ss_dssp             CCEEECTTCCEEEEEGGGTEEEEECTTTCCE---------EECCCSSCCSEEEEEECTTC--CEEEEETTTSCEEEECTT
T ss_pred             eeEEEeCCCCEEEEECCCCEEEEEecCCCce---------EeecccCCCCceEEEECCCC--CEEEEECCCCcEEEEcCC
Confidence            566665  66666666788999999875431         11111222567889999988  567777778899999987


Q ss_pred             CCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          247 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ......   ... .+...+.+++++++|+++++...++.|+++++..
T Consensus       222 ~~~~~~---~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          222 STTSTV---LPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             CSCCEE---CCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCccee---ecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence            654221   111 2235689999999999888999999999998764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.81  E-value=4.3e-17  Score=126.90  Aligned_cols=240  Identities=12%  Similarity=0.034  Sum_probs=154.3

Q ss_pred             EEEEeecCCCceEEEEee----------cCCeEEEEEcCCccccceeccc------CcceEEEEeCCCCCceEEEeeC--
Q 022590           13 TVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH------GDSINEIRTQPLKPSLVVSASK--   74 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~l~s~~~--   74 (294)
                      .++|+  |+|+ +++++.          .++.|.+||..+++.+.++...      ......++++| ++++|+++..  
T Consensus        54 ~i~~s--pdg~-~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~  129 (361)
T 2oiz_A           54 HVQVS--NDGK-KIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASP  129 (361)
T ss_dssp             EEEEC--TTSS-EEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESS
T ss_pred             ceEEC--CCCC-EEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCC
Confidence            55555  9999 777765          3678999999998888777542      34567899999 8888888764  


Q ss_pred             CCcEEEEEcCCCceEEE-eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           75 DESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        75 dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      +++|.+||+.+++.+.. +.    +.. ...+.+.|.+...+++.+.||.+.+|++......... ..            
T Consensus       130 ~~~v~v~d~~~~~~~~~~i~----~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~-~~------------  191 (361)
T 2oiz_A          130 ATSIGIVDVAKGDYVEDVTA----AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ-SR------------  191 (361)
T ss_dssp             SEEEEEEETTTTEEEEEEGG----GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE-EE------------
T ss_pred             CCeEEEEECCCCcEEEEEec----CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee-cc------------
Confidence            68999999999988777 54    222 2335677755577888899999999998652111000 00            


Q ss_pred             eeeceEEeecCCCceee-cceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC----------CCeeEEEE
Q 022590          154 VQFPVFIASVHSNYVDC-NRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE----------CDIWFIKF  222 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------~~i~~~~~  222 (294)
                         ....+.....++.. ...++..++..+.++.+.++|+.....       .....+....          .....++|
T Consensus       192 ---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~p~g~~~~a~  261 (361)
T 2oiz_A          192 ---SKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEV-------KVDGPWSLLNDEDKAKNWVPGGYNLVGL  261 (361)
T ss_dssp             ---CCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSC-------EEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred             ---ccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCc-------eecccccccCccccccccccCCeeEEEE
Confidence               00001111111110 011245566667789999999875431       1111111100          11223789


Q ss_pred             cccCCcceEEEEcC-----------CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          223 SCDFHYNAAAIGNR-----------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       223 ~~~~~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      +|+++  .+++...           .+.|.+||+.+.+  ....+.  .+.  +.+++|+|+|++|++++. +.|.+||.
T Consensus       262 ~~dg~--~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~--~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~  332 (361)
T 2oiz_A          262 HRASG--RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIP--GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDI  332 (361)
T ss_dssp             ETTTT--EEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEE--CTT--CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred             ecCCC--eEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEe--cCC--eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence            99985  3333321           3589999999886  334443  222  899999999999999887 99999998


Q ss_pred             CC
Q 022590          292 IP  293 (294)
Q Consensus       292 ~~  293 (294)
                      ++
T Consensus       333 ~t  334 (361)
T 2oiz_A          333 SQ  334 (361)
T ss_dssp             SS
T ss_pred             CC
Confidence            75

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=9e-18  Score=130.36  Aligned_cols=217  Identities=13%  Similarity=0.058  Sum_probs=138.8

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc------CcceEEEEeCCCCCceEEEeeCC--------
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH------GDSINEIRTQPLKPSLVVSASKD--------   75 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~l~s~~~d--------   75 (294)
                      .+..++|+  |+|+.+++++..++.|.+||+.+++....+..+      ...+..++|+| ++++|++++.+        
T Consensus        44 ~~~~~~~s--~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~  120 (349)
T 1jmx_B           44 GPGTAMMA--PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHY  120 (349)
T ss_dssp             SSCEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCE
T ss_pred             CCceeEEC--CCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC-CCCEEEEEccccccccccc
Confidence            46677886  999844556667899999999998877766533      23478999999 88888888865        


Q ss_pred             ----CcEEEEEcCCCce---EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCC-
Q 022590           76 ----ESVRLWNVQTGIC---ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS-  147 (294)
Q Consensus        76 ----g~i~vwd~~~~~~---~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~-  147 (294)
                          +.|.+||+.+++.   +..+.    +...+.+++|+| ++. +++++  +.|.+||+.++.............+. 
T Consensus       121 ~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~  192 (349)
T 1jmx_B          121 VVKPPRLEVFSTADGLEAKPVRTFP----MPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGY  192 (349)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEEE----CCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTB
T ss_pred             ccCCCeEEEEECCCccccceeeecc----CCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccc
Confidence                8999999988543   33343    444689999999 777 55544  34999999875432211111000000 


Q ss_pred             -----------CCCCceeeec---------------------------------eEEeecCCCceeecce---ecceEEE
Q 022590          148 -----------KFPTKYVQFP---------------------------------VFIASVHSNYVDCNRW---LGDFILS  180 (294)
Q Consensus       148 -----------~~~~~~~~~~---------------------------------~~~~~~~~~~i~~~~~---~~~~l~~  180 (294)
                                 .........+                                 ......+...+..+.+   +++++++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~  272 (349)
T 1jmx_B          193 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG  272 (349)
T ss_dssp             CCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE
T ss_pred             cCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEE
Confidence                       0000000000                                 0001112223344444   3567777


Q ss_pred             eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce
Q 022590          181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  251 (294)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  251 (294)
                      +  ++.|.+||+.+++         .+..+.. ...+..++|+|+++  +|++++.++.|++||+.+.+..
T Consensus       273 ~--~~~v~~~d~~~~~---------~~~~~~~-~~~~~~~~~s~dg~--~l~~~~~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          273 V--LNRLAKYDLKQRK---------LIKAANL-DHTYYCVAFDKKGD--KLYLGGTFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             E--ESEEEEEETTTTE---------EEEEEEC-SSCCCEEEECSSSS--CEEEESBSSEEEEEETTTTEEE
T ss_pred             E--cCeEEEEECccCe---------EEEEEcC-CCCccceEECCCCC--EEEEecCCCeEEEEecccccee
Confidence            6  8899999998754         3444443 34467899999984  6667788899999999887643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.80  E-value=2e-17  Score=130.39  Aligned_cols=240  Identities=12%  Similarity=0.081  Sum_probs=151.0

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEE--eCCCCCceEEEe------------
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR--TQPLKPSLVVSA------------   72 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~------------   72 (294)
                      +...+...+|+  |+|+ .|+.++.++.|++||+.+++....+..+...+....  ++| ++.+++..            
T Consensus        79 ~~~~~~~~~~s--pdg~-~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           79 RGDNTFGGFLS--PDDD-ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             SCBCSSSCEEC--TTSS-EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCS
T ss_pred             CCCCccceEEc--CCCC-EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECC-CCCeeccccccCcccccccc
Confidence            33444456776  9999 899999999999999999887766666666554444  478 77777632            


Q ss_pred             ----------eCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC------CcEEEEecccccccc
Q 022590           73 ----------SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYV  136 (294)
Q Consensus        73 ----------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~  136 (294)
                                ..+..|.+||+.+++......    +...+..+.|+|.++..|+.+..+      ..|.++|+....   
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---  227 (388)
T 3pe7_A          155 WKKFHEFYFTKPCCRLMRVDLKTGESTVILQ----ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN---  227 (388)
T ss_dssp             HHHHHHHGGGCCCEEEEEEETTTCCEEEEEE----ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC---
T ss_pred             cchhhhhhccCCcceEEEEECCCCceEEeec----CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc---
Confidence                      345789999999887655544    666789999999445556555543      367777766421   


Q ss_pred             ccceeecCCCCCCCCceeeeceEEeecCC--Cceeeccee--cceEEEeeC-CC----eEEEecCCCCCCCCCCCCceee
Q 022590          137 EKSFTWTDLPSKFPTKYVQFPVFIASVHS--NYVDCNRWL--GDFILSKSV-DN----EIVLWEPKMKEQSPGEGTADIL  207 (294)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~--~~~l~~~~~-d~----~i~iwd~~~~~~~~~~~~~~~~  207 (294)
                                           ...+..+.  ..+....|+  |+.|+..+. ++    .|.+||+.+++.       ..+
T Consensus       228 ---------------------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l  279 (388)
T 3pe7_A          228 ---------------------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN-------RQL  279 (388)
T ss_dssp             ---------------------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE-------EEE
T ss_pred             ---------------------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce-------EEE
Confidence                                 11112222  245566675  666654333 22    499999987752       122


Q ss_pred             eeeecCC---CCeeEEEEcccCCcceEEEE---------cCCCeEEEEeccCCCceeeeeccccccCC-----------C
Q 022590          208 QKYPVPE---CDIWFIKFSCDFHYNAAAIG---------NREGKIFVWELQSSPPVLIARLSHAQSKS-----------P  264 (294)
Q Consensus       208 ~~~~~~~---~~i~~~~~~~~~~~~~l~~~---------~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~  264 (294)
                      ...+...   .......|+|+++  .|+..         ..+..|++||+.+++...   +.  .+..           .
T Consensus       280 ~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~---l~--~~~~~~~~~~~~~~~~  352 (388)
T 3pe7_A          280 TSMPACSHLMSNYDGSLMVGDGS--DAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR---VA--RHDTSWKVFEGDRQVT  352 (388)
T ss_dssp             EEECCEEEEEECTTSSEEEEEEC--CC------------CCCCEEEEEETTTTEEEE---EE--ECCCCCCCBTTBSSTT
T ss_pred             EcCCCceeeeecCCCCeEccCCC--cceeEeeeccccccCCCCEEEEEeccCCceEE---ec--cccCcccccccccccC
Confidence            2222100   0011236999996  34432         556789999998875322   22  1222           4


Q ss_pred             eEEEEEccCCCEEEEec-cCCcEEEEecC
Q 022590          265 IRQTAMSYDGSTILSCC-EDGAIWRWDAI  292 (294)
Q Consensus       265 v~~~~~s~~~~~l~s~~-~dg~i~vw~~~  292 (294)
                      +..++|+|||+.|+..+ .+|...+|.+.
T Consensus       353 ~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          353 HPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             CCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            77889999999887655 57777777553

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=1.9e-17  Score=139.48  Aligned_cols=253  Identities=13%  Similarity=0.012  Sum_probs=161.9

Q ss_pred             cccCceeEEEEEeecCCCceEEEEe--ecCCeEEEEEcCCccccceecccCcceE---------EEEeC--CCCCce-EE
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAG--GINGIIRVIDVSNEKLHKSFVGHGDSIN---------EIRTQ--PLKPSL-VV   70 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~--~~dg~i~iw~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~~-l~   70 (294)
                      ..|...+..++|+  +++. +++..  +.++...||....+.....+..|...+.         ...|+  | +++. |+
T Consensus        20 ~~~~~~~~~~~~s--~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SP-Dg~~~la   95 (662)
T 3azo_A           20 ASRSGRPACVGAV--GDEV-WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRP-AGGPLLV   95 (662)
T ss_dssp             HHTCSCCEEEEEE--TTEE-EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCS-SSSCEEE
T ss_pred             hhcCCccceeEEc--CCeE-EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeec-CCCeEEE
Confidence            3578889999998  7665 56666  5588999999655555666766766666         56565  8 6666 55


Q ss_pred             EeeC-CCcEEEEEcC--C-CceEEEeeccC--CCCCceeEEEEecCCCceEEeeecC----------CcEEEEecccccc
Q 022590           71 SASK-DESVRLWNVQ--T-GICILIFAGAG--GHRNEVLSVDFHPSDIYRIASCGMD----------NTVKIWSMKEFWT  134 (294)
Q Consensus        71 s~~~-dg~i~vwd~~--~-~~~~~~~~~~~--~~~~~v~~l~~~~~~~~~l~~~~~d----------g~i~~wd~~~~~~  134 (294)
                      .++. +..|.++++.  . ++ ...+....  .|...+..++|+| +++.|++++.+          ..|++||+.....
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            5443 5566666664  2 33 34444100  0566789999999 88888888876          5899999876100


Q ss_pred             ccccceeecCCCCCCCCceeeeceEEee-cCCCceeeccee--cceEEEeeCC--------CeEEEecCC-CCCCCCCCC
Q 022590          135 YVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRWL--GDFILSKSVD--------NEIVLWEPK-MKEQSPGEG  202 (294)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~l~~~~~d--------~~i~iwd~~-~~~~~~~~~  202 (294)
                      ..                  ......+. .+...+..+.|+  |++|+.++.+        ..|.+||+. ++.      
T Consensus       174 ~~------------------~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~------  229 (662)
T 3azo_A          174 AD------------------RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR------  229 (662)
T ss_dssp             TC------------------GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC------
T ss_pred             cc------------------CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc------
Confidence            00                  00112222 344567777776  7888877754        379999998 341      


Q ss_pred             CceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC--eEEEEeccCCCceeeeeccccccC-----CCeEEEEEccCCC
Q 022590          203 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPVLIARLSHAQSK-----SPIRQTAMSYDGS  275 (294)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~  275 (294)
                      ..........+...+..+.|+|+++  +++++..++  .|.+||+.+++........ ....     ..+..++|+|+++
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~spdg~--l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~p~w~~~~~~~~~~~~~~  306 (662)
T 3azo_A          230 FADTRTLLGGPEEAIAQAEWAPDGS--LIVATDRTGWWNLHRVDPATGAATQLCRRE-EEFAGPLWTPGMRWFAPLANGL  306 (662)
T ss_dssp             EEEEEEEEEETTBCEEEEEECTTSC--EEEEECTTSSCEEEEECTTTCCEEESSCCS-SBSSCCCCSTTCCSEEECTTSC
T ss_pred             ccccEEeCCCCCceEcceEECCCCe--EEEEECCCCCeEEEEEECCCCceeeccccc-ccccCccccccCceEeEeCCCE
Confidence            0012222233456788999999994  777788888  5666666555432221111 0000     0156789999999


Q ss_pred             EEEEeccCCcEEEEec
Q 022590          276 TILSCCEDGAIWRWDA  291 (294)
Q Consensus       276 ~l~s~~~dg~i~vw~~  291 (294)
                      ++++++. +.++||.+
T Consensus       307 ~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          307 IAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             EEEEEBS-SSCEEEEE
T ss_pred             EEEEEEc-CccEEEEE
Confidence            9999998 99999944

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.80  E-value=1.3e-16  Score=121.07  Aligned_cols=239  Identities=10%  Similarity=-0.025  Sum_probs=158.1

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .+.....+++|+  |+|+.+++++..++.|..|+..++  ...+..+...+.+++++| +++++++...++.|.+||..+
T Consensus        25 ~~~~~~eg~~~d--~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           25 DGFTWTEGPVYV--PARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             CCCSSEEEEEEE--GGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTT
T ss_pred             cCCccccCCeEe--CCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCC
Confidence            344566788887  888657888888999999999877  566666778899999999 888887777778999999988


Q ss_pred             CceEEEeeccCC-CCCceeEEEEecCCCceEEe----eec-------------CCcEEEEeccccccccccceeecCCCC
Q 022590           86 GICILIFAGAGG-HRNEVLSVDFHPSDIYRIAS----CGM-------------DNTVKIWSMKEFWTYVEKSFTWTDLPS  147 (294)
Q Consensus        86 ~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~~----~~~-------------dg~i~~wd~~~~~~~~~~~~~~~~~~~  147 (294)
                      ++.........+ ....+..++++| ++.++++    |..             .+.|..++...                
T Consensus       100 g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g----------------  162 (296)
T 3e5z_A          100 GEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDG----------------  162 (296)
T ss_dssp             CCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTS----------------
T ss_pred             CcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCC----------------
Confidence            876544321111 123567899999 8887776    331             23444444331                


Q ss_pred             CCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCc-eeeeeeecCCCCeeEEEEcc
Q 022590          148 KFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA-DILQKYPVPECDIWFIKFSC  224 (294)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~  224 (294)
                               .......+......++|+  ++.+++.+.++.|.+||+....      .. .....+......+..+++.+
T Consensus       163 ---------~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g------~~~~~~~~~~~~~~~p~~i~~d~  227 (296)
T 3e5z_A          163 ---------TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARG------ETEYQGVHFTVEPGKTDGLRVDA  227 (296)
T ss_dssp             ---------CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSS------CEEEEEEEECCSSSCCCSEEEBT
T ss_pred             ---------CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCC------cCcCCCeEeeCCCCCCCeEEECC
Confidence                     011223344555677776  6777777778999999987211      11 01112222344566799999


Q ss_pred             cCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEE-ccCCCEEEEeccCCcEEEEecC
Q 022590          225 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAM-SYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       225 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++  .+.++.  ++.|.+||.. ++  ....+.  .+.. +.+++| +|+++.|++++.++ +.-++.+
T Consensus       228 ~G--~l~v~~--~~~v~~~~~~-g~--~~~~~~--~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~  285 (296)
T 3e5z_A          228 GG--LIWASA--GDGVHVLTPD-GD--ELGRVL--TPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETN  285 (296)
T ss_dssp             TS--CEEEEE--TTEEEEECTT-SC--EEEEEE--CSSC-CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred             CC--CEEEEc--CCeEEEECCC-CC--EEEEEE--CCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence            98  344444  7889999986 43  233333  2334 889999 58999898887764 4444443

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.79  E-value=6.3e-16  Score=115.59  Aligned_cols=220  Identities=12%  Similarity=0.054  Sum_probs=155.5

Q ss_pred             CceEEEEeecCCeEEEEEcCCccccceecccC-cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCC
Q 022590           22 GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  100 (294)
Q Consensus        22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  100 (294)
                      ++ +|++++.++.|.+||.++++.+.++..+. ..+.++.++| ++++|+  +.++.|..||. +++.+..+..  +...
T Consensus         5 ~~-~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~--~~~~   77 (276)
T 3no2_A            5 QH-LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAA--PAGC   77 (276)
T ss_dssp             CE-EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEEC--CTTC
T ss_pred             Cc-EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcC--CCCc
Confidence            44 89999999999999999999999998776 5789999999 888888  34678999999 8999988874  2235


Q ss_pred             ceeEEEEecCCCceEEeeec-CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce--ecce
Q 022590          101 EVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LGDF  177 (294)
Q Consensus       101 ~v~~l~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~  177 (294)
                      .+.++.+.| +++++++.+. ++.+..+|... +.......  ..               ....+......+.+  ++++
T Consensus        78 ~~~~~~~~~-dG~~lv~~~~~~~~v~~vd~~G-k~l~~~~~--~~---------------~~~~~~~~~~~v~~~~~G~~  138 (276)
T 3no2_A           78 EMQTARILP-DGNALVAWCGHPSTILEVNMKG-EVLSKTEF--ET---------------GIERPHAQFRQINKNKKGNY  138 (276)
T ss_dssp             EEEEEEECT-TSCEEEEEESTTEEEEEECTTS-CEEEEEEE--CC---------------SCSSGGGSCSCCEECTTSCE
T ss_pred             cccccEECC-CCCEEEEecCCCCEEEEEeCCC-CEEEEEec--cC---------------CCCcccccccCceECCCCCE
Confidence            788999999 8888888776 67777777532 11111000  00               00011112222333  3889


Q ss_pred             EEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590          178 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS  257 (294)
Q Consensus       178 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  257 (294)
                      +++...++.|..||.. ++         .+..+... ..+..+...+++  ++++++..++.|..+|..+++.+......
T Consensus       139 lv~~~~~~~v~~~d~~-G~---------~~w~~~~~-~~~~~~~~~~~g--~~~v~~~~~~~v~~~d~~tG~~~w~~~~~  205 (276)
T 3no2_A          139 LVPLFATSEVREIAPN-GQ---------LLNSVKLS-GTPFSSAFLDNG--DCLVACGDAHCFVQLNLESNRIVRRVNAN  205 (276)
T ss_dssp             EEEETTTTEEEEECTT-SC---------EEEEEECS-SCCCEEEECTTS--CEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred             EEEecCCCEEEEECCC-CC---------EEEEEECC-CCccceeEcCCC--CEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence            9999999999999987 65         44555443 345567777877  58888888889999999988755444322


Q ss_pred             c-c-ccCCCeEEEEEccCCCEEEEe
Q 022590          258 H-A-QSKSPIRQTAMSYDGSTILSC  280 (294)
Q Consensus       258 ~-~-~~~~~v~~~~~s~~~~~l~s~  280 (294)
                      . . .....+..++..++|.++++.
T Consensus       206 ~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          206 DIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             GSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCCCccccccccceEcCCCCEEEEe
Confidence            1 1 112347888899999988887

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.79  E-value=5.5e-17  Score=137.17  Aligned_cols=243  Identities=10%  Similarity=-0.019  Sum_probs=152.7

Q ss_pred             ccCceeEEEEEeecCCCceEEE-----EeecCCeEEEEEcCCccccceecccCcce--EEEEeCCCCCceEEEeeCCCc-
Q 022590            6 QKEESFYTVSWACNVDGIPFLV-----AGGINGIIRVIDVSNEKLHKSFVGHGDSI--NEIRTQPLKPSLVVSASKDES-   77 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~-----~~~~dg~i~iw~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~l~s~~~dg~-   77 (294)
                      +|...+..++|+  |||+ +||     .|+.+..|++||+.+++.+..  .+...+  ..++|+| +++.|+.++.|.. 
T Consensus       118 ~~~~~~~~~~~S--PDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~  191 (695)
T 2bkl_A          118 DGTVSLGTWAVS--WDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGGKYATPKWTP-DSKGFYYEWLPTDP  191 (695)
T ss_dssp             SSCEEEEEEEEC--TTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCCTTCCCEECT-TSSEEEEEECCCCT
T ss_pred             CCCEEEEEEEEC--CCCC-EEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcccccceEEec-CCCEEEEEEecCCC
Confidence            344567788887  9999 777     344456899999999886511  121222  6899999 8888988888776 


Q ss_pred             ------------EEEEEcCCCce--EEEeeccCCCCCceeEEEEecCCCceEEeeecCC----cEEEEeccccccccccc
Q 022590           78 ------------VRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN----TVKIWSMKEFWTYVEKS  139 (294)
Q Consensus        78 ------------i~vwd~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~  139 (294)
                                  |++|++.+++.  ...+. ...+...+..+.|+| ++.+|+.++.++    .|.+|+....       
T Consensus       192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~-~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~-------  262 (695)
T 2bkl_A          192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHE-RTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK-------  262 (695)
T ss_dssp             TSCGGGGGGGCEEEEEETTSCGGGCEEEEC-CCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCS-------
T ss_pred             CCccccCCCCCEEEEEECCCCchhceEEEe-cCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC-------
Confidence                        99999988763  22222 113556789999999 777777776655    5666654331       


Q ss_pred             eeecCCCCCCCCceeeeceEEeecCCCceeeccee-cceEEEeeC----CCeEEEecCCCCCCCCCCCCceeeeeeecC-
Q 022590          140 FTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVP-  213 (294)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-  213 (294)
                                       ....+..+...+....+. ++ ++..+.    ++.|.+||+.++...      ......... 
T Consensus       263 -----------------~~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~------~~~~l~~~~~  318 (695)
T 2bkl_A          263 -----------------DFRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARA------SWKEIVPEDS  318 (695)
T ss_dssp             -----------------SCEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGG------GCEEEECCCS
T ss_pred             -----------------ceEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCcc------CCeEEecCCC
Confidence                             111222233333333333 55 444343    578999999765310      011112222 


Q ss_pred             CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC-CCceeeeeccccccCCCeEEEEEccCCCEEE----EeccCCcEEE
Q 022590          214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-SPPVLIARLSHAQSKSPIRQTAMSYDGSTIL----SCCEDGAIWR  288 (294)
Q Consensus       214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~----s~~~dg~i~v  288 (294)
                      ...+..++++ ++  .++++...++..++|.+.. ++  ....+.. .....+..++++|+++.|+    +....+.|++
T Consensus       319 ~~~l~~~~~~-~~--~lv~~~~~dg~~~l~~~~~~g~--~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~  392 (695)
T 2bkl_A          319 SASLLSVSIV-GG--HLSLEYLKDATSEVRVATLKGK--PVRTVQL-PGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK  392 (695)
T ss_dssp             SCEEEEEEEE-TT--EEEEEEEETTEEEEEEEETTCC--EEEECCC-SSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEEE-CC--EEEEEEEECCEEEEEEEeCCCC--eeEEecC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence            3456777777 33  5788888999988887762 32  2222321 1245677889999998777    3345578999


Q ss_pred             EecCC
Q 022590          289 WDAIP  293 (294)
Q Consensus       289 w~~~~  293 (294)
                      ||+.+
T Consensus       393 ~d~~~  397 (695)
T 2bkl_A          393 TSVST  397 (695)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            99864

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=3.9e-17  Score=137.54  Aligned_cols=244  Identities=10%  Similarity=0.021  Sum_probs=148.3

Q ss_pred             EEEEeecCCCceE-EEEee-cCCeEEEEEcC--Cccccceecc-----cCcceEEEEeCCCCCceEEEeeCC--------
Q 022590           13 TVSWACNVDGIPF-LVAGG-INGIIRVIDVS--NEKLHKSFVG-----HGDSINEIRTQPLKPSLVVSASKD--------   75 (294)
Q Consensus        13 ~~~~~~~~~~~~~-l~~~~-~dg~i~iw~~~--~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~d--------   75 (294)
                      ...|+.+|||+ . |+.++ .+..|.++++.  .......+..     |...+..++|+| +++.|++++.+        
T Consensus        81 ~~~~~~SPDg~-~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~~~~  158 (662)
T 3azo_A           81 PWAGVPRPAGG-PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP-ERGEVWCMAEEFTGEGPSD  158 (662)
T ss_dssp             CEEEECCSSSS-CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET-TTTEEEEEEEEECSSSTTC
T ss_pred             cceeeeecCCC-eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC-CCCEEEEEEecccCCCCCC
Confidence            55566569999 5 55444 35677777765  2033445554     677899999999 88889888876        


Q ss_pred             --CcEEEEEcCC------CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC--------cEEEEecc-cccccccc
Q 022590           76 --ESVRLWNVQT------GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--------TVKIWSMK-EFWTYVEK  138 (294)
Q Consensus        76 --g~i~vwd~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg--------~i~~wd~~-~~~~~~~~  138 (294)
                        ..|.+||+.+      ++......   .+...+..++|+| +++.|+.++.++        .|++||+. ++..    
T Consensus       159 ~~~~i~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~----  230 (662)
T 3azo_A          159 VRRFLAAVPLDGSAAADRSAVRELSD---DAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF----  230 (662)
T ss_dssp             EEEEEEEEETTSTTTTCGGGSEESSC---SCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE----
T ss_pred             ceeEEEEEECCCCccccCCceeEEEe---cCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc----
Confidence              5899999987      55433320   2456788899999 888888777553        79999988 3200    


Q ss_pred             ceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCC--eEEEecCCCCCCCCCCCCceeeeeeecCC
Q 022590          139 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN--EIVLWEPKMKEQSPGEGTADILQKYPVPE  214 (294)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  214 (294)
                                      .........+...+..+.|+  |++++++..++  .|.+||+.+++............ .+.-.
T Consensus       231 ----------------~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~p~w~  293 (662)
T 3azo_A          231 ----------------ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA-GPLWT  293 (662)
T ss_dssp             ----------------EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS-CCCCS
T ss_pred             ----------------cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc-Ccccc
Confidence                            01222334456778888886  67777777788  67777765543110000000000 00000


Q ss_pred             CCeeEEEEcccCCcceEEEEcCCCeEEEEecc--CCCceeeeeccccccCCCeEEE-EEccCCCEEEEeccCCc--EEEE
Q 022590          215 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ--SSPPVLIARLSHAQSKSPIRQT-AMSYDGSTILSCCEDGA--IWRW  289 (294)
Q Consensus       215 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~s~~~dg~--i~vw  289 (294)
                      ..+..++|+|++  .+++++.. +.+++|.+.  +++   ...+.  .+...+..+ +++++.-++++++.+..  |++|
T Consensus       294 ~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~d~~~~~---~~~l~--~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~  365 (662)
T 3azo_A          294 PGMRWFAPLANG--LIAVVHGK-GAAVLGILDPESGE---LVDAA--GPWTEWAATLTVSGTRAVGVAASPRTAYEVVEL  365 (662)
T ss_dssp             TTCCSEEECTTS--CEEEEEBS-SSCEEEEEETTTTE---EEECC--SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             ccCceEeEeCCC--EEEEEEEc-CccEEEEEECCCCc---EEEec--CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEE
Confidence            114568888887  58888888 999999554  442   23333  444567666 44433334444555544  4444


Q ss_pred             ec
Q 022590          290 DA  291 (294)
Q Consensus       290 ~~  291 (294)
                      |+
T Consensus       366 d~  367 (662)
T 3azo_A          366 DT  367 (662)
T ss_dssp             ET
T ss_pred             EC
Confidence            54

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.79  E-value=3.5e-16  Score=132.63  Aligned_cols=251  Identities=8%  Similarity=-0.052  Sum_probs=156.6

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCC-----eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCc----
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGING-----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES----   77 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~----   77 (294)
                      |...+..++|+  |||+ +||.+..++     .|++||+.+++.......+ ..+..++|+| +++.|+.++.++.    
T Consensus       123 ~~~~~~~~~~S--PDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          123 GTVALRGYAFS--EDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             SCEEEEEEEEC--TTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCC
T ss_pred             CCEEEEEEEEC--CCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEe-CCCEEEEEEECCccccc
Confidence            33457777777  9999 777665543     8999999998876533322 2377899999 8888888887766    


Q ss_pred             ------------EEEEEcCCCceE--EEeeccCCCCCceeEEEEecCCCceEEeeec-----CCcEEEEecccccccccc
Q 022590           78 ------------VRLWNVQTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-----DNTVKIWSMKEFWTYVEK  138 (294)
Q Consensus        78 ------------i~vwd~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~  138 (294)
                                  |.+|++.+++..  ..+.. ..|...+..+.|+| ++.+|+.++.     +..|++||+.+.......
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~-~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  275 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEecc-CCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCC
Confidence                        999999887632  22221 13556688999999 7777776654     568999998751000000


Q ss_pred             ceeecCCCCCCCCceeeeceEEeecCCCceee-cceecceEEEeeCC----CeEEEecCCCCCCCCCCCCceeeeeeecC
Q 022590          139 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWLGDFILSKSVD----NEIVLWEPKMKEQSPGEGTADILQKYPVP  213 (294)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  213 (294)
                                      ......+..+...+.. +..+++.|+..+..    +.|.+||+.++...       ....+..+
T Consensus       276 ----------------~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-------~~~~l~~~  332 (710)
T 2xdw_A          276 ----------------ILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-------KWKVLVPE  332 (710)
T ss_dssp             ----------------SCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-------GCEEEECC
T ss_pred             ----------------ccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-------cceeccCC
Confidence                            0012222333333333 22236666655543    36999998765310       11222223


Q ss_pred             C--CCeeEEEEcccCCcceEEEEcCCCe--EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe----ccCCc
Q 022590          214 E--CDIWFIKFSCDFHYNAAAIGNREGK--IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC----CEDGA  285 (294)
Q Consensus       214 ~--~~i~~~~~~~~~~~~~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~----~~dg~  285 (294)
                      .  ..+..+.|++++  .++++...++.  |++|++.+++.  ...+.  .+...+..++++|+++.++..    ...+.
T Consensus       333 ~~~~~~~~~~~~~~~--~lv~~~~~~g~~~l~~~~~~~g~~--~~~l~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~  406 (710)
T 2xdw_A          333 HEKDVLEWVACVRSN--FLVLCYLHDVKNTLQLHDLATGAL--LKIFP--LEVGSVVGYSGQKKDTEIFYQFTSFLSPGI  406 (710)
T ss_dssp             CSSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTTCCE--EEEEC--CCSSEEEEEECCTTCSEEEEEEECSSCCCE
T ss_pred             CCCCeEEEEEEEcCC--EEEEEEEECCEEEEEEEECCCCCE--EEecC--CCCceEEEEecCCCCCEEEEEEeCCCCCCE
Confidence            2  257778888655  57788888885  55566655542  23333  335678899999998766633    24578


Q ss_pred             EEEEecCC
Q 022590          286 IWRWDAIP  293 (294)
Q Consensus       286 i~vw~~~~  293 (294)
                      |+.||+.+
T Consensus       407 i~~~d~~t  414 (710)
T 2xdw_A          407 IYHCDLTK  414 (710)
T ss_dssp             EEEEETTS
T ss_pred             EEEEECCC
Confidence            99999864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.78  E-value=1.5e-15  Score=117.13  Aligned_cols=243  Identities=11%  Similarity=0.005  Sum_probs=152.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC----CcEEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD----ESVRLW   81 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~i~vw   81 (294)
                      .+...+.+++|+  |+|+ +++++..++.|.+||.++++.......+...+.+++++| +++++++...+    +.|.+|
T Consensus        42 ~~~~~~~~~~~~--~~g~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           42 KKGLQLEGLNFD--RQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             SSCCCEEEEEEC--TTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEE
T ss_pred             ccCccccCcEEC--CCCC-EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEE
Confidence            344556788887  8998 788888899999999988776554445667899999999 77877777666    689999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec------CCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      |..++.....+... .+...+.+++++| ++.++++...      .+.|..+|.....                      
T Consensus       118 d~~~~~~~~~~~~~-~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~----------------------  173 (333)
T 2dg1_A          118 TENGDNLQDIIEDL-STAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRT----------------------  173 (333)
T ss_dssp             CTTSCSCEEEECSS-SSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCC----------------------
T ss_pred             eCCCCEEEEEEccC-ccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCE----------------------
Confidence            99877655333311 2456799999999 7776666543      2445555544311                      


Q ss_pred             eceEEeecCCCceeeccee--cceE-EEeeCCCeEEEecCCCC-CCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceE
Q 022590          156 FPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMK-EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAA  231 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l  231 (294)
                        ...+......+..+.|+  ++.+ ++...++.|.+||+... ...... .......... ...+..+++++++  .++
T Consensus       174 --~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~-~~~~~~~~~~-~~~~~~i~~d~~G--~l~  247 (333)
T 2dg1_A          174 --VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF-GATIPYYFTG-HEGPDSCCIDSDD--NLY  247 (333)
T ss_dssp             --EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE-EEEEEEECCS-SSEEEEEEEBTTC--CEE
T ss_pred             --EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccc-cceEEEecCC-CCCCCceEECCCC--CEE
Confidence              01111122345667775  5545 44456789999998642 210000 0000111111 1356789999988  466


Q ss_pred             EEEcCCCeEEEEeccCCCceeeeeccc--cccCCCeEEEEEccCCCEEEEeccC
Q 022590          232 AIGNREGKIFVWELQSSPPVLIARLSH--AQSKSPIRQTAMSYDGSTILSCCED  283 (294)
Q Consensus       232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~d  283 (294)
                      ++...++.|.+||.+ ++.........  .++...+.+++|+|+++.|+.++.+
T Consensus       248 v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          248 VAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            666677899999984 43222222211  1122268899999998777665554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=1.3e-15  Score=117.04  Aligned_cols=235  Identities=10%  Similarity=-0.024  Sum_probs=157.4

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL   90 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~   90 (294)
                      ...+++.   +++ +.++...++.|.+||..+++.+.++. .......+++++ ++.++++...++.|.+||..+++...
T Consensus        46 ~~~i~~~---~~~-lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           46 AQSMVIR---DGI-GWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             EEEEEEE---TTE-EEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             ceEEEEE---CCE-EEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEE
Confidence            4556653   344 66667778999999999999988885 346789999988 66655555488999999999998877


Q ss_pred             EeeccC--CCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           91 IFAGAG--GHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        91 ~~~~~~--~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      .+....  +.......+++ . ++.++++.. .++.|.++|+.+...                       ...+.. ...
T Consensus       120 ~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~-----------------------~~~i~~-g~~  173 (328)
T 3dsm_A          120 YIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKV-----------------------VDELTI-GIQ  173 (328)
T ss_dssp             EEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEE-----------------------EEEEEC-SSC
T ss_pred             EEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeE-----------------------EEEEEc-CCC
Confidence            776311  11125667777 3 666666554 488999999987421                       111111 122


Q ss_pred             eeeccee--cceEEEeeCC----------CeEEEecCCCCCCCCCCCCceeeeeeecC-CCCeeEEEEcccCCcceEEEE
Q 022590          168 VDCNRWL--GDFILSKSVD----------NEIVLWEPKMKEQSPGEGTADILQKYPVP-ECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       168 i~~~~~~--~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~  234 (294)
                      ...+.++  +++++++..+          +.|.++|..+++         ....+..+ ......++++|+++  .+++.
T Consensus       174 p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~---------v~~~~~~~~g~~p~~la~~~d~~--~lyv~  242 (328)
T 3dsm_A          174 PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT---------VEKQFKFKLGDWPSEVQLNGTRD--TLYWI  242 (328)
T ss_dssp             BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE---------EEEEEECCTTCCCEEEEECTTSC--EEEEE
T ss_pred             ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe---------EEEEEecCCCCCceeEEEecCCC--EEEEE
Confidence            3455554  6666665544          789999998654         34444432 23678999999884  56655


Q ss_pred             cCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEEe----ccCCcEEEEecC
Q 022590          235 NREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSC----CEDGAIWRWDAI  292 (294)
Q Consensus       235 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~----~~dg~i~vw~~~  292 (294)
                      ..  .|.+||..+++........  ........++++| ++.+.++.    ..++.|.+||.+
T Consensus       243 ~~--~v~~~d~~t~~~~~~~~~~--~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          243 NN--DIWRMPVEADRVPVRPFLE--FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             SS--SEEEEETTCSSCCSSCSBC--CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             cc--EEEEEECCCCceeeeeeec--CCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            44  8999999887632111111  1135688999999 55666665    678899999875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=1.3e-17  Score=131.71  Aligned_cols=232  Identities=11%  Similarity=0.008  Sum_probs=145.9

Q ss_pred             eEEEEEeecCCCceEEEEeecC---CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590           11 FYTVSWACNVDGIPFLVAGGIN---GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      +..++|+  |+|+ +|+.....   ..|.+||+.+++......++......+.|+| +++.|+.++.++.|.+||+.+++
T Consensus        38 ~~~~~~S--pdG~-~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           38 FYQKCFT--QDGK-KLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFIST-DERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             TTSCCBC--TTSC-EEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECT-TSSEEEEEETTTEEEEEETTTCC
T ss_pred             eecCcCC--CCCC-EEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECC-CCCEEEEEEcCCcEEEEECCCCC
Confidence            5666776  9999 66655432   4788899988776544443333334488999 88999999999999999998887


Q ss_pred             eEEEeeccCCCCCceeE-------------------EEEecCCCceEEee-----ecCCcEEEEeccccccccccceeec
Q 022590           88 CILIFAGAGGHRNEVLS-------------------VDFHPSDIYRIASC-----GMDNTVKIWSMKEFWTYVEKSFTWT  143 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~-------------------l~~~~~~~~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~~  143 (294)
                      ......   .+......                   ..|+| ++..++.+     ..+..|.+||+.++.          
T Consensus       114 ~~~~~~---~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~----------  179 (396)
T 3c5m_A          114 EQVIYT---VDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGE----------  179 (396)
T ss_dssp             EEEEEE---CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCC----------
T ss_pred             cEEEEe---cccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCc----------
Confidence            665554   23332222                   34566 55545443     355678888887632          


Q ss_pred             CCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCC------CeEEEecCCCCCCCCCCCCceeeeeeecC-
Q 022590          144 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVP-  213 (294)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-  213 (294)
                                    ...+..+...+..+.|+   +..|+..+.+      ..|.+||+..++.          ..+..+ 
T Consensus       180 --------------~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----------~~l~~~~  235 (396)
T 3c5m_A          180 --------------LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV----------RKIKEHA  235 (396)
T ss_dssp             --------------EEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC----------EESSCCC
T ss_pred             --------------EEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce----------eEeeccC
Confidence                          11122345566677775   4455554433      4688888865431          111111 


Q ss_pred             -CCCeeEEEEcccCCcceEEEEcCC-----CeEEEEeccCCCceeeeeccccccCCCeEEEEEcc-CCCEEEEec-----
Q 022590          214 -ECDIWFIKFSCDFHYNAAAIGNRE-----GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY-DGSTILSCC-----  281 (294)
Q Consensus       214 -~~~i~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~-----  281 (294)
                       ...+..+.|+|+++  .|+..+.+     +.|++||+.+++........      ... +.|+| +|+++++++     
T Consensus       236 ~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~------~~~-~~~s~~dg~~l~~~~~~~p~  306 (396)
T 3c5m_A          236 EGESCTHEFWIPDGS--AMAYVSYFKGQTDRVIYKANPETLENEEVMVMP------PCS-HLMSNFDGSLMVGDGCDAPV  306 (396)
T ss_dssp             TTEEEEEEEECTTSS--CEEEEEEETTTCCEEEEEECTTTCCEEEEEECC------SEE-EEEECSSSSEEEEEECCC--
T ss_pred             CCccccceEECCCCC--EEEEEecCCCCccceEEEEECCCCCeEEeeeCC------CCC-CCccCCCCceEEEecCCcce
Confidence             22467789999995  45444332     44999999887643333222      123 89999 999888754     


Q ss_pred             -----------cCCcEEEEecCC
Q 022590          282 -----------EDGAIWRWDAIP  293 (294)
Q Consensus       282 -----------~dg~i~vw~~~~  293 (294)
                                 .++.|++||+.+
T Consensus       307 ~~~~~~~~~~~~~~~i~~~d~~~  329 (396)
T 3c5m_A          307 DVADADSYNIENDPFLYVLNTKA  329 (396)
T ss_dssp             --------CCCCCCEEEEEETTT
T ss_pred             eeccccccccCCCCcEEEEeccc
Confidence                       346899999754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.77  E-value=1.4e-16  Score=123.00  Aligned_cols=240  Identities=9%  Similarity=0.006  Sum_probs=159.9

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      ..|.+++|+  +++. .++..+.++.++.|   .++....+..+...+.+++|+| ++++++++..++.|.+||..+++.
T Consensus         6 ~~~~~~~~~--~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~   78 (333)
T 2dg1_A            6 QDLPTLFYS--GKSN-SAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEI   78 (333)
T ss_dssp             CCCCBCCSC--GGGG-CSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCE
T ss_pred             cccceeeec--CCcc-ceeEEeecccCccc---ccceeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcE
Confidence            457777776  7666 66666778899999   3445566666777789999999 788888888899999999988876


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecC----CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      .....   .+...+.+++++| ++.++++...+    +.|.+||.......                     .......+
T Consensus        79 ~~~~~---~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~---------------------~~~~~~~~  133 (333)
T 2dg1_A           79 KRPFV---SHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQ---------------------DIIEDLST  133 (333)
T ss_dssp             EEEEE---CSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCE---------------------EEECSSSS
T ss_pred             EEEee---CCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEE---------------------EEEccCcc
Confidence            65443   3567899999999 77777776665    68999998763210                     00000112


Q ss_pred             CCceeeccee--cceEEEeeC------CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          165 SNYVDCNRWL--GDFILSKSV------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      ...+..+.++  ++++++...      .+.|..+|...++          +..+......+..++|+|+++ .++++...
T Consensus       134 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~~~i~~~~dg~-~l~v~~~~  202 (333)
T 2dg1_A          134 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT----------VTPIIQNISVANGIALSTDEK-VLWVTETT  202 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC----------EEEEEEEESSEEEEEECTTSS-EEEEEEGG
T ss_pred             CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE----------EEEeecCCCcccceEECCCCC-EEEEEeCC
Confidence            3456677776  555555443      3567777765432          111111223477899999984 24455566


Q ss_pred             CCeEEEEeccC-CCceeee--e-c-cccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          237 EGKIFVWELQS-SPPVLIA--R-L-SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       237 dg~i~i~d~~~-~~~~~~~--~-~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++.|.+||+.. ++.....  . . ....+ ..+..++++++|+++++...++.|.+||.+
T Consensus       203 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          203 ANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             GTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             CCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence            88999999964 2211110  0 1 11111 357889999999988888788899999874

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.76  E-value=9e-16  Score=119.07  Aligned_cols=221  Identities=10%  Similarity=-0.023  Sum_probs=141.2

Q ss_pred             eeEEEEEeecCCCceEEEEeecC---C--eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---------
Q 022590           10 SFYTVSWACNVDGIPFLVAGGIN---G--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---------   75 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~d---g--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---------   75 (294)
                      .+..++|+  |||+ +|+..+.+   +  .|.+|++.+++...... +.. +..++|+| +++.|+.++.+         
T Consensus        60 ~~~~~~~S--pDg~-~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~  133 (347)
T 2gop_A           60 NATMPRIS--PDGK-KIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIF  133 (347)
T ss_dssp             SCEEEEEC--TTSS-EEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECT-TSSEEEEEEECCCC------
T ss_pred             cCCCeEEC--CCCC-EEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECC-CCCEEEEEEccCCCcCCcEE
Confidence            35667776  9999 77776653   3  47888888777655444 334 99999999 77877776632         


Q ss_pred             ------------------CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC-------cEEEEecc
Q 022590           76 ------------------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-------TVKIWSMK  130 (294)
Q Consensus        76 ------------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-------~i~~wd~~  130 (294)
                                        ..|.+||+.+++.+..+.   . . .+..+.|+| ++ +++++..++       ...+|.+.
T Consensus       134 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~---~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          134 EDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE---K-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             ---CCCC---------CEEEEEEEETTTTEEEEEEE---E-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred             EcccceeecCcccccCccceEEEEECCCCeEEeeec---C-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeC
Confidence                              578999998887645555   2 2 788999999 77 777775542       34555443


Q ss_pred             ccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCC--------CeEEEecCCCCCCCCCCC
Q 022590          131 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD--------NEIVLWEPKMKEQSPGEG  202 (294)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~  202 (294)
                      ...                        ...+..+ ..+..+..+|+.|+.++.+        ..|.+||  +++      
T Consensus       207 ~~~------------------------~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~------  253 (347)
T 2gop_A          207 DGK------------------------EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE------  253 (347)
T ss_dssp             TTE------------------------EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC------
T ss_pred             CCc------------------------eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCc------
Confidence            211                        0011111 2333334457777776643        4688888  332      


Q ss_pred             CceeeeeeecCCCCeeE-EEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec
Q 022590          203 TADILQKYPVPECDIWF-IKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC  281 (294)
Q Consensus       203 ~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  281 (294)
                         .......+...+.. +.|+ ++   ++++++.++.+++| +.+++.  ....   .+...|.+++|+|  .++++++
T Consensus       254 ---~~~l~~~~~~~~~~~~~~s-dg---~~~~~~~~~~~~l~-~~~g~~--~~~~---~~~~~v~~~~~s~--~~~~~~~  318 (347)
T 2gop_A          254 ---VMGILDEVDRGVGQAKIKD-GK---VYFTLFEEGSVNLY-IWDGEI--KPIA---KGRHWIMGFDVDE--IVVYLKE  318 (347)
T ss_dssp             ---EEESSTTCCSEEEEEEEET-TE---EEEEEEETTEEEEE-EESSSE--EEEE---CSSSEEEEEEESS--SEEEEEE
T ss_pred             ---eEeccccCCcccCCccEEc-Cc---EEEEEecCCcEEEE-EcCCce--EEEe---cCCCeEEeeeeeC--cEEEEEc
Confidence               11112233445665 8888 64   78888899999999 885432  2222   2356799999999  6777777


Q ss_pred             cCCcE-EEEec
Q 022590          282 EDGAI-WRWDA  291 (294)
Q Consensus       282 ~dg~i-~vw~~  291 (294)
                      .++.. .+|.+
T Consensus       319 ~~~~~~~l~~~  329 (347)
T 2gop_A          319 TATRLRELFTW  329 (347)
T ss_dssp             CSSSCCEEEEE
T ss_pred             CCCChHHheEe
Confidence            77654 67754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.74  E-value=5.6e-14  Score=106.53  Aligned_cols=239  Identities=9%  Similarity=0.005  Sum_probs=160.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccc-eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      .+...+.++++.  ++|+ +.++...++.|.+||.. ++... .+..+...+.++++.+ ++.++++...++.|..||..
T Consensus        12 ~~~~~~~~i~~d--~~g~-l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           12 NQDTGPYGITVS--DKGK-VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             SSSCCEEEEEEC--TTSC-EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT
T ss_pred             CcCCCccceEEC--CCCC-EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC
Confidence            345678888887  8898 66666667899999987 54322 1223456789999999 77887777778889999986


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                       ++. ..+... .....+.++++.| ++.++++...++.|..||... .                      .........
T Consensus        87 -g~~-~~~~~~-~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g-~----------------------~~~~~~~~~  139 (299)
T 2z2n_A           87 -GII-KEYTLP-NPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDDG-K----------------------IREYELPNK  139 (299)
T ss_dssp             -SCE-EEEECS-STTCCEEEEEECT-TSCEEEEETTTTEEEEECTTC-C----------------------EEEEECSST
T ss_pred             -CcE-EEEeCC-CcCCCceeeEECC-CCCEEEEecCCceEEEECCCC-C----------------------EEEecCCCC
Confidence             433 333311 2445789999998 778777777788999999832 1                      001111122


Q ss_pred             CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEE
Q 022590          165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFV  242 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i  242 (294)
                      ...+..+.++  +++.++...++.|..||. +++.        ...........+..+++.+++  .+.++...++.|.+
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--------~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~  208 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDI--------TEFKIPTPASGPVGITKGNDD--ALWFVEIIGNKIGR  208 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE--------EEEECSSTTCCEEEEEECTTS--SEEEEETTTTEEEE
T ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcE--------EEeeCCCCCCcceeEEECCCC--CEEEEccCCceEEE
Confidence            3456666665  556666666789999998 4431        111122234567889999987  46666666889999


Q ss_pred             EeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          243 WELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       243 ~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ||. +++.. .....  .....+.+++++++|+++++...++.|..||.
T Consensus       209 ~~~-~g~~~-~~~~~--~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          209 ITT-SGEIT-EFKIP--TPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             ECT-TCCEE-EEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             ECC-CCcEE-EEECC--CCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            999 55422 22122  34467899999999997777767888999986

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.74  E-value=2.3e-16  Score=124.61  Aligned_cols=232  Identities=12%  Similarity=0.030  Sum_probs=144.0

Q ss_pred             EEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEE-------------------EEeCCCCCceEEEe--
Q 022590           14 VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINE-------------------IRTQPLKPSLVVSA--   72 (294)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~l~s~--   72 (294)
                      +.|+  |+|+ +|+.++.++.|++||+.+++.......+......                   +.|+| +++.++.+  
T Consensus        86 ~~~s--pdg~-~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~  161 (396)
T 3c5m_A           86 GFIS--TDER-AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEF  161 (396)
T ss_dssp             CEEC--TTSS-EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHH
T ss_pred             ceEC--CCCC-EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeee
Confidence            5676  9999 8989888999999999888765555544443323                   35677 66655544  


Q ss_pred             ---eCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC------CcEEEEeccccccccccceeec
Q 022590           73 ---SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWT  143 (294)
Q Consensus        73 ---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~  143 (294)
                         ..+..|.+||+.+++......    +...+..+.|+|.++..|+..+.+      ..|.+||+....          
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~~~~~----~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~----------  227 (396)
T 3c5m_A          162 YHTNPTCRLIKVDIETGELEVIHQ----DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN----------  227 (396)
T ss_dssp             HHTCCCEEEEEEETTTCCEEEEEE----ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC----------
T ss_pred             ccCCCcceEEEEECCCCcEEeecc----CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc----------
Confidence               456789999998887665543    667789999999445555554433      358888876521          


Q ss_pred             CCCCCCCCceeeeceEEeecC--CCceeeccee--cceEEEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCC
Q 022590          144 DLPSKFPTKYVQFPVFIASVH--SNYVDCNRWL--GDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPE  214 (294)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~--~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  214 (294)
                                    ...+..+  ...+..+.|+  ++.|+.++.+     +.|++||+.+++.       ..+...+   
T Consensus       228 --------------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-------~~l~~~~---  283 (396)
T 3c5m_A          228 --------------VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-------EEVMVMP---  283 (396)
T ss_dssp             --------------CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE-------EEEEECC---
T ss_pred             --------------eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe-------EEeeeCC---
Confidence                          0111111  2245566776  6766666543     4599999986642       1122111   


Q ss_pred             CCeeEEEEcc-cCCcceEEEEc----------------CCCeEEEEeccCCCceeeeecccc------ccCCCeEEEEEc
Q 022590          215 CDIWFIKFSC-DFHYNAAAIGN----------------REGKIFVWELQSSPPVLIARLSHA------QSKSPIRQTAMS  271 (294)
Q Consensus       215 ~~i~~~~~~~-~~~~~~l~~~~----------------~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~v~~~~~s  271 (294)
                       ... ..|+| +++  +++.++                .++.|++||+.+++..........      .....+..++|+
T Consensus       284 -~~~-~~~s~~dg~--~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s  359 (396)
T 3c5m_A          284 -PCS-HLMSNFDGS--LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFT  359 (396)
T ss_dssp             -SEE-EEEECSSSS--EEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEEC
T ss_pred             -CCC-CCccCCCCc--eEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEc
Confidence             123 88999 884  555543                347899999987753222211100      000025668899


Q ss_pred             cCCCEEEEecc-CCcEEEEec
Q 022590          272 YDGSTILSCCE-DGAIWRWDA  291 (294)
Q Consensus       272 ~~~~~l~s~~~-dg~i~vw~~  291 (294)
                      |+|+.|+.++. ++...+|.+
T Consensus       360 ~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          360 PNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             TTSSEEEEEECTTSSCEEEEE
T ss_pred             cCCCeEEEEecCCCCceEEEE
Confidence            99998887654 565555544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.73  E-value=8.5e-15  Score=112.56  Aligned_cols=216  Identities=8%  Similarity=0.025  Sum_probs=148.5

Q ss_pred             cCCeEEEEEcCCccccceec------ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590           31 INGIIRVIDVSNEKLHKSFV------GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  104 (294)
Q Consensus        31 ~dg~i~iw~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  104 (294)
                      .++.|.++|.++++....+.      ........+.+.  ++.++++...++.|.+||..+++.+..+.    .......
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~----~~~~p~~   88 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT----GFTSPRY   88 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE----CCSSEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC----CCCCCcE
Confidence            37899999999988765442      122346778875  45677777778999999999999988886    4467899


Q ss_pred             EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC-----CceeecceecceEE
Q 022590          105 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-----NYVDCNRWLGDFIL  179 (294)
Q Consensus       105 l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~l~  179 (294)
                      +++++ ++.++++...++.|.+||..+....                       ..+....     .....+.+.+..++
T Consensus        89 i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~-----------------------~~i~~g~~~~~~~~p~~i~~~~~~ly  144 (328)
T 3dsm_A           89 IHFLS-DEKAYVTQIWDYRIFIINPKTYEIT-----------------------GYIECPDMDMESGSTEQMVQYGKYVY  144 (328)
T ss_dssp             EEEEE-TTEEEEEEBSCSEEEEEETTTTEEE-----------------------EEEECTTCCTTTCBCCCEEEETTEEE
T ss_pred             EEEeC-CCeEEEEECCCCeEEEEECCCCeEE-----------------------EEEEcCCccccCCCcceEEEECCEEE
Confidence            99988 6665555547899999999874311                       1111111     13344555666666


Q ss_pred             Eee--CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC----------CeEEEEeccC
Q 022590          180 SKS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE----------GKIFVWELQS  247 (294)
Q Consensus       180 ~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~  247 (294)
                      ++.  .++.|.++|+.+++         ....+... .....+.++|++  .++++...+          +.|.++|..+
T Consensus       145 v~~~~~~~~v~viD~~t~~---------~~~~i~~g-~~p~~i~~~~dG--~l~v~~~~~~~~~~~~~~~~~v~~id~~t  212 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDK---------VVDELTIG-IQPTSLVMDKYN--KMWTITDGGYEGSPYGYEAPSLYRIDAET  212 (328)
T ss_dssp             EEECTTCCEEEEEETTTTE---------EEEEEECS-SCBCCCEECTTS--EEEEEBCCBCTTCSSCBCCCEEEEEETTT
T ss_pred             EEcCCCCCEEEEEECCCCe---------EEEEEEcC-CCccceEEcCCC--CEEEEECCCccCCccccCCceEEEEECCC
Confidence            555  48899999998764         34444432 345678899988  455555443          7899999988


Q ss_pred             CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          248 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+........   .......++++|++++|..+..  .|.+||.++
T Consensus       213 ~~v~~~~~~~---~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t  253 (328)
T 3dsm_A          213 FTVEKQFKFK---LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEA  253 (328)
T ss_dssp             TEEEEEEECC---TTCCCEEEEECTTSCEEEEESS--SEEEEETTC
T ss_pred             CeEEEEEecC---CCCCceeEEEecCCCEEEEEcc--EEEEEECCC
Confidence            7533222221   1235789999999999988755  899999864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.73  E-value=2.3e-14  Score=117.18  Aligned_cols=247  Identities=11%  Similarity=-0.005  Sum_probs=158.8

Q ss_pred             EeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC--CCceEEEee
Q 022590           16 WACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ--TGICILIFA   93 (294)
Q Consensus        16 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~~   93 (294)
                      |..+|.+. ++++...++.|.++|..+++.+.++... ..+..+.|+| +++++++++.|+.|.+||+.  +++.+..+.
T Consensus       161 ~~~d~~~~-~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~  237 (567)
T 1qks_A          161 NDWDLENL-FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK  237 (567)
T ss_dssp             SCCCGGGE-EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred             cccCCCce-EEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence            44445454 7788888999999999999998888743 4567999999 88999999999999999996  788887776


Q ss_pred             ccCCCCCceeEEEEe----cCCCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC-c
Q 022590           94 GAGGHRNEVLSVDFH----PSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-Y  167 (294)
Q Consensus        94 ~~~~~~~~v~~l~~~----~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  167 (294)
                          .......++|+    | ++++++++ ..++++.++|..+.+...........             ......|.. .
T Consensus       238 ----~G~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~-------------~~~~~~~p~~r  299 (567)
T 1qks_A          238 ----IGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-------------YDEQEYHPEPR  299 (567)
T ss_dssp             ----CCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-------------TTTCCEESCCC
T ss_pred             ----cCCCCceeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccc-------------cccccccCCCc
Confidence                34457899999    6 66555554 55699999998774322111100000             000000111 2


Q ss_pred             eeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          168 VDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       168 i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      +..+..+   ..+++....+|.|.++|....+.       ..+..+. .......+.|+|+++ .++++...++.|.++|
T Consensus       300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-------~~v~~i~-~~~~~~d~~~~pdgr-~~~va~~~sn~V~ViD  370 (567)
T 1qks_A          300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNN-------LKTTEIS-AERFLHDGGLDGSHR-YFITAANARNKLVVID  370 (567)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-------EEEEEEE-CCSSEEEEEECTTSC-EEEEEEGGGTEEEEEE
T ss_pred             eEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-------ceeeeee-ccccccCceECCCCC-EEEEEeCCCCeEEEEE
Confidence            3333333   44566667789999999875431       1122222 234566789999995 3445556788999999


Q ss_pred             ccCCCceeeeec-cccccCCCeEEEEEccCC-CEEEEec-cCCcEEEEecCC
Q 022590          245 LQSSPPVLIARL-SHAQSKSPIRQTAMSYDG-STILSCC-EDGAIWRWDAIP  293 (294)
Q Consensus       245 ~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~-~~l~s~~-~dg~i~vw~~~~  293 (294)
                      +.+++....... ....|.+.-..+ ++|++ .+.+++. .++.|.++|..+
T Consensus       371 ~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          371 TKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             TTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence            998864433333 222333222222 57874 4445553 568999999865

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.72  E-value=5.9e-15  Score=125.68  Aligned_cols=243  Identities=12%  Similarity=-0.021  Sum_probs=149.4

Q ss_pred             ceeEEEEEeecCCCceEEEEeecC-----CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCc------
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGIN-----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDES------   77 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~------   77 (294)
                      ..+..++|+  |||+ +||.++.+     ..|++||+.+++.+.. ..+...+..++|+| + +.|+.++.++.      
T Consensus       163 ~~~~~~~~S--PDG~-~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~  236 (741)
T 1yr2_A          163 TALDAWAAS--DDGR-LLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLG-N-DALLYSRFAEPKEGQAF  236 (741)
T ss_dssp             EEEEEEEEC--TTSS-EEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEEST-T-SEEEEEECCCC------
T ss_pred             EEEEeEEEC--CCCC-EEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEEC-C-CEEEEEEecCccccccc
Confidence            356677776  9999 77766543     3699999999887543 22222346899999 7 77777766554      


Q ss_pred             --------EEEEEcCCCce--EEEeeccCCCCCceeEEEEecCCCceEEeeecCC-----cEEEEeccccccccccceee
Q 022590           78 --------VRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTW  142 (294)
Q Consensus        78 --------i~vwd~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~  142 (294)
                              |.+|++.++..  ...+.. ..+...+..+.|+| ++.+|+..+.++     .|++||+.+...        
T Consensus       237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~--------  306 (741)
T 1yr2_A          237 QALNYNQTVWLHRLGTPQSADQPVFAT-PELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKI--------  306 (741)
T ss_dssp             --CCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEE--------
T ss_pred             ccCCCCCEEEEEECCCCchhCEEEecc-CCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCC--------
Confidence                    88999977653  222321 12334588999999 887777766543     799999876310        


Q ss_pred             cCCCCCCCCceeeeceEEeecCCCceee-cceecceEEEeeC----CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCe
Q 022590          143 TDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWLGDFILSKSV----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDI  217 (294)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i  217 (294)
                                   .....+..+...... +..+++.|+..+.    .+.|.+||+.++.       .......+.+...+
T Consensus       307 -------------~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-------~~~~~l~~~~~~~l  366 (741)
T 1yr2_A          307 -------------GPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST-------PRFDTVVPESKDNL  366 (741)
T ss_dssp             -------------CCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS-------CEEEEEECCCSSEE
T ss_pred             -------------cccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc-------cccEEEecCCCCeE
Confidence                         001122222222222 2224777776665    3569999987631       01122223333445


Q ss_pred             eEEEEcccCCcceEEEEcCCCeEEEEecc-CCCceeeeeccccccCCCeEEEEEccCCCEEE----EeccCCcEEEEecC
Q 022590          218 WFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL----SCCEDGAIWRWDAI  292 (294)
Q Consensus       218 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~----s~~~dg~i~vw~~~  292 (294)
                      ..+.+. ++  .++++...++..++|.+. .++  ....+.. .....+..+.++|+++.|+    +....+.|++||+.
T Consensus       367 ~~~~~~-~~--~lv~~~~~dg~~~l~~~~~~g~--~~~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~  440 (741)
T 1yr2_A          367 ESVGIA-GN--RLFASYIHDAKSQVLAFDLDGK--PAGAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA  440 (741)
T ss_dssp             EEEEEE-BT--EEEEEEEETTEEEEEEEETTSC--EEEECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred             EEEEEE-CC--EEEEEEEECCEEEEEEEeCCCC--ceeeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence            566666 33  578888889988887665 232  2223321 2246688999999988666    33455789999986


Q ss_pred             C
Q 022590          293 P  293 (294)
Q Consensus       293 ~  293 (294)
                      +
T Consensus       441 t  441 (741)
T 1yr2_A          441 T  441 (741)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=5.2e-14  Score=106.16  Aligned_cols=201  Identities=8%  Similarity=0.049  Sum_probs=139.1

Q ss_pred             ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeecc---CCCCCceeEEEEecCCCceEEeeec-CCcEEE
Q 022590           51 GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA---GGHRNEVLSVDFHPSDIYRIASCGM-DNTVKI  126 (294)
Q Consensus        51 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~  126 (294)
                      ++-..+.++++++ ++.++++...++.|.+||.. ++.+..+...   .++...+..+++.+.++.++++... ++.|.+
T Consensus        27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence            4556789999999 78888888889999999986 6666555421   1244578999995327776666643 889999


Q ss_pred             EeccccccccccceeecCCCCCCCCceeeeceEEe-ecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCC
Q 022590          127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA-SVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT  203 (294)
Q Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  203 (294)
                      ||... .                       ....+ ..+...+..++++  ++++++...++.|.+||....        
T Consensus       105 ~d~~g-~-----------------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--------  152 (286)
T 1q7f_A          105 YNQYG-Q-----------------------FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--------  152 (286)
T ss_dssp             ECTTS-C-----------------------EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--------
T ss_pred             ECCCC-c-----------------------EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC--------
Confidence            99443 1                       11111 1233456677775  667777777899999996532        


Q ss_pred             ceeeeeee--cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec
Q 022590          204 ADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC  281 (294)
Q Consensus       204 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  281 (294)
                        .+..+.  .....+..+++++++  .++++...++.|++||....   ....+...++...+..++++|+|+++++..
T Consensus       153 --~~~~~~~~~~~~~p~~i~~~~~g--~l~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~  225 (286)
T 1q7f_A          153 --VLHKFGCSKHLEFPNGVVVNDKQ--EIFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADN  225 (286)
T ss_dssp             --EEEEEECTTTCSSEEEEEECSSS--EEEEEEGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             --EEEEeCCCCccCCcEEEEECCCC--CEEEEECCCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEEeC
Confidence              233332  233468899999988  57777778899999997543   233333223335689999999999988888


Q ss_pred             cCC-cEEEEecC
Q 022590          282 EDG-AIWRWDAI  292 (294)
Q Consensus       282 ~dg-~i~vw~~~  292 (294)
                      .++ .|.+|+..
T Consensus       226 ~~~~~i~~~~~~  237 (286)
T 1q7f_A          226 HNNFNLTIFTQD  237 (286)
T ss_dssp             SSSCEEEEECTT
T ss_pred             CCCEEEEEECCC
Confidence            776 99999864

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=1.2e-14  Score=112.82  Aligned_cols=217  Identities=10%  Similarity=0.120  Sum_probs=135.8

Q ss_pred             ceeEEEEEeecCCCceEEEEee---------cCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---C
Q 022590            9 ESFYTVSWACNVDGIPFLVAGG---------INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---E   76 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g   76 (294)
                      ..+...++    ||+ .++...         .++.|.+||+.+++.. .+    ..+..++|+| +++.|+.++.+   +
T Consensus        15 ~~~~~~~~----dG~-~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~Sp-Dg~~la~~~~~~~~~   83 (347)
T 2gop_A           15 AYLSDPRT----KGE-LVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISP-DGKKIAFMRANEEKK   83 (347)
T ss_dssp             CEEEEEEE----ETT-EEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECT-TSSEEEEEEEETTTT
T ss_pred             EEcccceE----CCc-EEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECC-CCCEEEEEEeccCCC
Confidence            45566666    787 555432         3678999999887653 33    5688999999 88888877654   3


Q ss_pred             --cEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC---------------------------CcEEEE
Q 022590           77 --SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---------------------------NTVKIW  127 (294)
Q Consensus        77 --~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d---------------------------g~i~~w  127 (294)
                        .|.+|++.+++......    +.. +..+.|+| ++..|+.++.+                           ..|.+|
T Consensus        84 ~~~l~~~~~~~g~~~~l~~----~~~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  157 (347)
T 2gop_A           84 VSEIWVADLETLSSKKILE----AKN-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIF  157 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEE----ESE-EEEEEECT-TSSEEEEEEECCCC---------CCCC---------CEEEEEEE
T ss_pred             cceEEEEECCCCceEEEEc----CCC-ccceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEE
Confidence              37788888877665554    333 99999999 77777776632                           468888


Q ss_pred             eccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCC-------eEEEecCCCCCCC
Q 022590          128 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN-------EIVLWEPKMKEQS  198 (294)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~-------~i~iwd~~~~~~~  198 (294)
                      |+.++.                       ....+.. . .+..+.|+  + +++++..++       ...+|.+.+++  
T Consensus       158 d~~~~~-----------------------~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~--  209 (347)
T 2gop_A          158 DTESEE-----------------------VIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK--  209 (347)
T ss_dssp             ETTTTE-----------------------EEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE--
T ss_pred             ECCCCe-----------------------EEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc--
Confidence            887631                       1111222 2 56677776  5 666665432       33444443221  


Q ss_pred             CCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC--------CeEEEEeccCCCceeeeeccccccCCCeEE-EE
Q 022590          199 PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE--------GKIFVWELQSSPPVLIARLSHAQSKSPIRQ-TA  269 (294)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~-~~  269 (294)
                              ...+..+ ..+..  ++|+++  .|+..+.+        ..|.+||  +++  ......  .+...+.. +.
T Consensus       210 --------~~~l~~~-~~~~~--~spdg~--~l~~~~~~~~~~~~~~~~l~~~d--~~~--~~~l~~--~~~~~~~~~~~  270 (347)
T 2gop_A          210 --------EEKMFEK-VSFYA--VDSDGE--RILLYGKPEKKYMSEHNKLYIYD--GKE--VMGILD--EVDRGVGQAKI  270 (347)
T ss_dssp             --------EEEEEEE-ESEEE--EEECSS--CEEEEECCSSSCCCSSCEEEEEC--SSC--EEESST--TCCSEEEEEEE
T ss_pred             --------eEEeccC-cceee--ECCCCC--EEEEEEccccCCccccceEEEEC--CCc--eEeccc--cCCcccCCccE
Confidence                    1122222 33333  389985  55554432        4688888  443  222222  34466776 99


Q ss_pred             EccCCCEEEEeccCCcEEEEecC
Q 022590          270 MSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       270 ~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |+ ++ ++++++.++.+++| +.
T Consensus       271 ~s-dg-~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          271 KD-GK-VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             ET-TE-EEEEEEETTEEEEE-EE
T ss_pred             Ec-Cc-EEEEEecCCcEEEE-Ec
Confidence            99 88 89999999999999 74

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.71  E-value=1.6e-14  Score=111.19  Aligned_cols=211  Identities=9%  Similarity=0.009  Sum_probs=139.1

Q ss_pred             CcceEEEEeCCCCCceEEEeeCC------------------------CcEEEEEcCCCceEEEeeccCCCCCceeEEEEe
Q 022590           53 GDSINEIRTQPLKPSLVVSASKD------------------------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH  108 (294)
Q Consensus        53 ~~~v~~~~~~~~~~~~l~s~~~d------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~  108 (294)
                      -+.+.+++++| +++++++...+                        ++|.+||..+++.+..+..  ++-..+..++++
T Consensus        23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~p~gia~d   99 (329)
T 3fvz_A           23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK--NLFYLPHGLSID   99 (329)
T ss_dssp             CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT--TTCSSEEEEEEC
T ss_pred             cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC--CccCCceEEEEC
Confidence            46789999999 88888887777                        4799999988988766542  345678999999


Q ss_pred             cCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEee-CC
Q 022590          109 PSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKS-VD  184 (294)
Q Consensus       109 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~-~d  184 (294)
                      | +++++++...++.|++||........ ..+.....+            .....+......++++   ++++++.+ .+
T Consensus       100 ~-~g~l~v~d~~~~~v~~~~~~g~~~~~-~~~~~~~~~------------g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~  165 (329)
T 3fvz_A          100 T-DGNYWVTDVALHQVFKLDPHSKEGPL-LILGRSMQP------------GSDQNHFCQPTDVAVEPSTGAVFVSDGYCN  165 (329)
T ss_dssp             T-TSCEEEEETTTTEEEEECTTCSSCCS-EEESBTTBC------------CCSTTCCSSEEEEEECTTTCCEEEEECSSC
T ss_pred             C-CCCEEEEECCCCEEEEEeCCCCeEEE-EEecccCCC------------CCCccccCCCcEEEEeCCCCeEEEEeCCCC
Confidence            9 88888888889999999986521000 000000000            0001233456667775   45666665 68


Q ss_pred             CeEEEecCCCCCCCCCCCCceeeeeeec----------CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590          185 NEIVLWEPKMKEQSPGEGTADILQKYPV----------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  254 (294)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  254 (294)
                      +.|++||.. +.         .+..+..          .-.....++++|++. .++++...++.|++|+..+++.  ..
T Consensus       166 ~~I~~~~~~-g~---------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-~l~v~d~~~~~I~~~~~~~G~~--~~  232 (329)
T 3fvz_A          166 SRIVQFSPS-GK---------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-QLCVADRENGRIQCFKTDTKEF--VR  232 (329)
T ss_dssp             CEEEEECTT-SC---------EEEEECEECCSSSCCTTEESCEEEEEEETTTT-EEEEEETTTTEEEEEETTTCCE--EE
T ss_pred             CeEEEEcCC-CC---------EEEEeccCCCCCCCCCcccCCCcEEEEECCCC-EEEEEECCCCEEEEEECCCCcE--EE
Confidence            999999943 32         2222221          113378899999832 5778888899999999987763  33


Q ss_pred             eccccccCCCeEEEEEcc------CCCEEEEeccCCcEEEEecCC
Q 022590          255 RLSHAQSKSPIRQTAMSY------DGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       255 ~~~~~~~~~~v~~~~~s~------~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+....+...+..++++|      +|+..++...+..|++|++.+
T Consensus       233 ~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~  277 (329)
T 3fvz_A          233 EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSS  277 (329)
T ss_dssp             EECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTT
T ss_pred             EEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCC
Confidence            333335556788999999      444333344456899998653

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=2.3e-16  Score=134.36  Aligned_cols=206  Identities=11%  Similarity=0.003  Sum_probs=134.5

Q ss_pred             cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCc-----eeEEEEecCCCceEEeeecC-------
Q 022590           54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE-----VLSVDFHPSDIYRIASCGMD-------  121 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----v~~l~~~~~~~~~l~~~~~d-------  121 (294)
                      ....+++|+| ++.+++++  |++|++||+.+++....+.   +|...     ...+.|+| ++++|+.++.+       
T Consensus        17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~~   89 (740)
T 4a5s_A           17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLE---NSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHS   89 (740)
T ss_dssp             CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEEC---TTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSSC
T ss_pred             ccccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEe---chhhhhhcccccceEECC-CCCEEEEEECCeeeEEEc
Confidence            3466899999 88888886  8999999999999877666   34432     34588999 88888888876       


Q ss_pred             --CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCC
Q 022590          122 --NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQ  197 (294)
Q Consensus       122 --g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~  197 (294)
                        +.+.+||+.++.                        ...+..+...+...+|+  |+.|+.+ .++.|++||+.+++.
T Consensus        90 ~~~~~~~~d~~~~~------------------------~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           90 YTASYDIYDLNKRQ------------------------LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS  144 (740)
T ss_dssp             EEEEEEEEETTTTE------------------------ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC
T ss_pred             cceEEEEEECCCCc------------------------EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCce
Confidence              566799998742                        11234466678888887  7788876 578999999987653


Q ss_pred             CCCCCCceeeeeeecCC---------CCeeEEEEcccCCcceEEEEcCC-------------------------------
Q 022590          198 SPGEGTADILQKYPVPE---------CDIWFIKFSCDFHYNAAAIGNRE-------------------------------  237 (294)
Q Consensus       198 ~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~l~~~~~d-------------------------------  237 (294)
                      ............+..+.         .....+.||||++  .|+..+.|                               
T Consensus       145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~--~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT--FLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS--EEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             EEEcCCCCccceecCcccccccchhcCCCcceEECCCCC--EEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            11100000000011111         1223588999995  66665321                               


Q ss_pred             -----CeEEEEeccC---CCceeeeeccc----cccCCCeEEEEEccCCCEEEEec----cCCcEEEEecCC
Q 022590          238 -----GKIFVWELQS---SPPVLIARLSH----AQSKSPIRQTAMSYDGSTILSCC----EDGAIWRWDAIP  293 (294)
Q Consensus       238 -----g~i~i~d~~~---~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~s~~----~dg~i~vw~~~~  293 (294)
                           ..|++||+.+   ++......+..    .++...+..++|+|||+.++...    .+..|++||+++
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence                 1578888887   63211222221    12566799999999999766543    334799999754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.70  E-value=7.3e-13  Score=100.36  Aligned_cols=236  Identities=9%  Similarity=-0.043  Sum_probs=154.5

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee--cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      ...+.++++.  ++|. +.++...++.|..|+.. ++. ..+  ......+.++++.+ ++.++++...++.|..||. +
T Consensus        56 ~~~~~~i~~~--~~g~-l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~  128 (299)
T 2z2n_A           56 DAKVMCLTIS--SDGE-VWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-D  128 (299)
T ss_dssp             TCCEEEEEEC--TTSC-EEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-T
T ss_pred             cCceeeEEEC--CCCC-EEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-C
Confidence            3567777776  8888 77776668899999976 332 222  22455789999999 7788887777889999998 5


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ++.......  .....+..+++.+ ++.++++...++.|..||. +...                      .........
T Consensus       129 g~~~~~~~~--~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~----------------------~~~~~~~~~  182 (299)
T 2z2n_A          129 GKIREYELP--NKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDI----------------------TEFKIPTPA  182 (299)
T ss_dssp             CCEEEEECS--STTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCE----------------------EEEECSSTT
T ss_pred             CCEEEecCC--CCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcE----------------------EEeeCCCCC
Confidence            554432211  2445789999998 7777777666789999998 4211                      001111223


Q ss_pred             Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590          166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~  243 (294)
                      ..+..+.++  +++.++...++.|..||. +++.        ...........+..+++.+++  .+.++...++.|..|
T Consensus       183 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--------~~~~~~~~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~  251 (299)
T 2z2n_A          183 SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--------TEFKIPTPNARPHAITAGAGI--DLWFTEWGANKIGRL  251 (299)
T ss_dssp             CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--------EEEECSSTTCCEEEEEECSTT--CEEEEETTTTEEEEE
T ss_pred             CcceeEEECCCCCEEEEccCCceEEEECC-CCcE--------EEEECCCCCCCceeEEECCCC--CEEEeccCCceEEEE
Confidence            445666665  566666556789999998 4431        111122334668899999987  456665577899999


Q ss_pred             eccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          244 ELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |.. ++ .......  .+...+.++++ ++|++.++.+ .+.+..++.++
T Consensus       252 d~~-g~-~~~~~~~--~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~  295 (299)
T 2z2n_A          252 TSN-NI-IEEYPIQ--IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK  295 (299)
T ss_dssp             ETT-TE-EEEEECS--SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred             CCC-Cc-eEEEeCC--CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence            983 32 2222222  33467899999 8888777765 45677777653

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.69  E-value=9.5e-15  Score=113.72  Aligned_cols=237  Identities=10%  Similarity=0.008  Sum_probs=147.6

Q ss_pred             CCCceEEEEee------cCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee----------CCCcEEEEEc
Q 022590           20 VDGIPFLVAGG------INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS----------KDESVRLWNV   83 (294)
Q Consensus        20 ~~~~~~l~~~~------~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~dg~i~vwd~   83 (294)
                      ++++ ++++..      .|+.|.+||..+++.+..+..+..+  .++|+| ++++++++.          .+++|.+||.
T Consensus        13 ~~~~-~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~sp-dg~~lyv~~~~~~~~~~g~~~~~v~v~d~   88 (361)
T 2oiz_A           13 PQEN-RIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSN-DGKKIYTMTTYHERITRGKRSDVVEVWDA   88 (361)
T ss_dssp             CGGG-EEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECT-TSSEEEEEEEEETTSSSSCEEEEEEEEET
T ss_pred             CCCC-EEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECC-CCCEEEEEEecccccccCCCCCEEEEEEC
Confidence            4565 555543      4789999999999988888776665  899999 888888876          3678999999


Q ss_pred             CCCceEEEeeccCC---CCCceeEEEEecCCCceEEeeec--CCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           84 QTGICILIFAGAGG---HRNEVLSVDFHPSDIYRIASCGM--DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        84 ~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      .+++.+..+.....   +......++++| ++++|+++..  ++.|.+||+.+.+.                       +
T Consensus        89 ~t~~~~~~i~~~~~~~~~g~~p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~-----------------------~  144 (361)
T 2oiz_A           89 DKLTFEKEISLPPKRVQGLNYDGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDY-----------------------V  144 (361)
T ss_dssp             TTCCEEEEEEECTTBCCBCCCGGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEE-----------------------E
T ss_pred             cCCcEEEEEEcCccccccCCCcceEEECC-CCCEEEEECCCCCCeEEEEECCCCcE-----------------------E
Confidence            99988887764211   234578899999 8888887764  58999999998421                       1


Q ss_pred             EE-eecCCCce-eeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceee---eeeecCCCCeeEEEEcccCCcceEE
Q 022590          159 FI-ASVHSNYV-DCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL---QKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       159 ~~-~~~~~~~i-~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      .. +. ..... ..+... +..+++.+.||.+.+|+......     .....   ..+.....+ ..+.+++++.  .++
T Consensus       145 ~~~i~-~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~-----~~~~~~~~~~~~~~~~~-~~~~~~~~g~--~~~  215 (361)
T 2oiz_A          145 EDVTA-AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK-----VASQSRSKQMFSVKDDP-IFIAPALDKD--KAH  215 (361)
T ss_dssp             EEEGG-GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS-----EEEEEECCCCSCTTTSC-BCSCCEECSS--EEE
T ss_pred             EEEec-CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc-----EeeeccccceEcCCCCc-eEEEecccCC--EEE
Confidence            11 11 11100 001111 35677888899999998864221     00000   011111111 2233456663  455


Q ss_pred             EEcCCCeEEEEeccCCCceeeeeccccc--------cCCCeEEEEEccCCCEEEEecc-----------CCcEEEEecCC
Q 022590          233 IGNREGKIFVWELQSSPPVLIARLSHAQ--------SKSPIRQTAMSYDGSTILSCCE-----------DGAIWRWDAIP  293 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s~~~-----------dg~i~vw~~~~  293 (294)
                      ..+.++.+.++|+..........+....        .......++|+|+++.++++..           .+.|.+||+++
T Consensus       216 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t  295 (361)
T 2oiz_A          216 FVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT  295 (361)
T ss_dssp             EEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT
T ss_pred             EEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC
Confidence            5667899999999766433222211000        0011223789999888877643           34799999865

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.68  E-value=1.8e-13  Score=104.52  Aligned_cols=242  Identities=12%  Similarity=0.084  Sum_probs=149.7

Q ss_pred             eeEEEEEeecCCCceEEEE-------eecCCeEEEEEcCCccccceec----ccCcceEEEEeCCCC-CceEEEeeCCCc
Q 022590           10 SFYTVSWACNVDGIPFLVA-------GGINGIIRVIDVSNEKLHKSFV----GHGDSINEIRTQPLK-PSLVVSASKDES   77 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~-------~~~dg~i~iw~~~~~~~~~~~~----~h~~~v~~~~~~~~~-~~~l~s~~~dg~   77 (294)
                      ...+++|.  ++|. ++++       +..++.|.+||..+++......    ++...+.++++++ + ++++++.. .+.
T Consensus        19 ~~~~~~~~--~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~   93 (314)
T 1pjx_A           19 GAEGPVFD--KNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLG   93 (314)
T ss_dssp             TCEEEEEC--TTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTE
T ss_pred             CccCceEC--CCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCC
Confidence            45678887  8887 7777       6778999999987776532221    2456789999999 6 66555544 447


Q ss_pred             EEEEEcCCCceEEE-eeccCC-CCCceeEEEEecCCCceEEeeecC---------------CcEEEEeccccccccccce
Q 022590           78 VRLWNVQTGICILI-FAGAGG-HRNEVLSVDFHPSDIYRIASCGMD---------------NTVKIWSMKEFWTYVEKSF  140 (294)
Q Consensus        78 i~vwd~~~~~~~~~-~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~d---------------g~i~~wd~~~~~~~~~~~~  140 (294)
                      |.+||.. ++.... .....+ ....+.+++++| +++++++...+               +.|..+|... ..      
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~------  164 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QM------  164 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CE------
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCC-CE------
Confidence            8899987 665433 221111 123588999999 77777766554               4566665431 10      


Q ss_pred             eecCCCCCCCCceeeeceEEeecCCCceeeccee------cceEEE-eeCCCeEEEecCC-CCCCCCCCCCceeeeeeec
Q 022590          141 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL------GDFILS-KSVDNEIVLWEPK-MKEQSPGEGTADILQKYPV  212 (294)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~l~~-~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~  212 (294)
                                        .....+......+.++      ++.++. ...++.|.+||+. .+..    ........+..
T Consensus       165 ------------------~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~----~~~~~~~~~~~  222 (314)
T 1pjx_A          165 ------------------IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI----ENKKVWGHIPG  222 (314)
T ss_dssp             ------------------EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE----EEEEEEEECCC
T ss_pred             ------------------EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc----ccceEEEECCC
Confidence                              0001111223444444      434444 4567899999976 2210    00011222222


Q ss_pred             CC-CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEE-EEeccCCcEEEEe
Q 022590          213 PE-CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI-LSCCEDGAIWRWD  290 (294)
Q Consensus       213 ~~-~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vw~  290 (294)
                      +. ..+..+++++++  .++++...++.|.+||.++++.....  .  .+...+.+++++|+++.| ++...++.|..|+
T Consensus       223 ~~~~~p~~i~~d~~G--~l~v~~~~~~~i~~~d~~~g~~~~~~--~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          223 THEGGADGMDFDEDN--NLLVANWGSSHIEVFGPDGGQPKMRI--R--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             CSSCEEEEEEEBTTC--CEEEEEETTTEEEEECTTCBSCSEEE--E--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCCCCceEECCCC--CEEEEEcCCCEEEEEcCCCCcEeEEE--e--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            22 457789999988  56666667889999998865433222  2  233568999999999955 5556678899998


Q ss_pred             cCC
Q 022590          291 AIP  293 (294)
Q Consensus       291 ~~~  293 (294)
                      +..
T Consensus       297 ~~~  299 (314)
T 1pjx_A          297 WQR  299 (314)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            764

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.67  E-value=3.3e-14  Score=120.64  Aligned_cols=236  Identities=8%  Similarity=-0.067  Sum_probs=143.7

Q ss_pred             CCCceEEEEeecC-C----eEEEEEcCCcccccee------cccCcceEEEEeCCCCCceEEEeeCCC-----cEEEEEc
Q 022590           20 VDGIPFLVAGGIN-G----IIRVIDVSNEKLHKSF------VGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNV   83 (294)
Q Consensus        20 ~~~~~~l~~~~~d-g----~i~iw~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~dg-----~i~vwd~   83 (294)
                      |+|+ +++....+ +    .+.+.+...++....+      .+|...+..++||| ++++|+.+..++     +|++||+
T Consensus        81 ~dG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~  158 (710)
T 2xdw_A           81 KKGK-RYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKV  158 (710)
T ss_dssp             EETT-EEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEET
T ss_pred             EECC-EEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECC-CCCEEEEEEcCCCCceEEEEEEEC
Confidence            7888 55544332 2    3455554444432111      23445788999999 888887665543     8999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc----------------EEEEeccccccccccceeecCCCC
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT----------------VKIWSMKEFWTYVEKSFTWTDLPS  147 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~----------------i~~wd~~~~~~~~~~~~~~~~~~~  147 (294)
                      .+++......    ....+..++|+| ++..|+.++.++.                |++|++.+....            
T Consensus       159 ~tg~~~~~~~----~~~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~------------  221 (710)
T 2xdw_A          159 DGAKELPDVL----ERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE------------  221 (710)
T ss_dssp             TTTEEEEEEE----EEECSCCEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG------------
T ss_pred             CCCCCCcccc----cCcccceEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc------------
Confidence            9998766433    122367899999 8888888877765                999999763210            


Q ss_pred             CCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-----CCeEEEecCCC------CCCCCCCCCceeeeeeecCC
Q 022590          148 KFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-----DNEIVLWEPKM------KEQSPGEGTADILQKYPVPE  214 (294)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-----d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~  214 (294)
                             ...+.....|...+..+.|+  |++|+..+.     +..|.+||+.+      +..        ....+..+.
T Consensus       222 -------~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~--------~~~~l~~~~  286 (710)
T 2xdw_A          222 -------DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL--------KWVKLIDNF  286 (710)
T ss_dssp             -------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC--------CCEEEECSS
T ss_pred             -------ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc--------ceEEeeCCC
Confidence                   00111222244556667776  777776654     57899999876      321        123333444


Q ss_pred             CCeeEEEEcccCCcceEEEEcC---CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCc--EEEE
Q 022590          215 CDIWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA--IWRW  289 (294)
Q Consensus       215 ~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~--i~vw  289 (294)
                      ..+.. .|+|+++ .+++.+..   .+.|.+||+.+.+......+........+..++|++++.++++...|+.  |++|
T Consensus       287 ~~~~~-~~s~dg~-~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~  364 (710)
T 2xdw_A          287 EGEYD-YVTNEGT-VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH  364 (710)
T ss_dssp             SSCEE-EEEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             CcEEE-EEeccCC-EEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence            44443 5888885 23333332   3469999998764211122221111136888999988888888888885  5555


Q ss_pred             ec
Q 022590          290 DA  291 (294)
Q Consensus       290 ~~  291 (294)
                      ++
T Consensus       365 ~~  366 (710)
T 2xdw_A          365 DL  366 (710)
T ss_dssp             ET
T ss_pred             EC
Confidence            65

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.67  E-value=2.5e-14  Score=121.07  Aligned_cols=234  Identities=8%  Similarity=0.003  Sum_probs=144.5

Q ss_pred             cCCCceEEEEeecCC-----eEEEEEcCCcccccee------cccCcceEEEEeCCCCCceEE-----EeeCCCcEEEEE
Q 022590           19 NVDGIPFLVAGGING-----IIRVIDVSNEKLHKSF------VGHGDSINEIRTQPLKPSLVV-----SASKDESVRLWN   82 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~-----s~~~dg~i~vwd   82 (294)
                      +|+|+ +++....++     .|.+.+...++....+      .+|...+..++||| ++++|+     .|+.+.+|++||
T Consensus        76 ~~dG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SP-DG~~la~~~~~~G~~~~~i~v~d  153 (695)
T 2bkl_A           76 SRRNG-RFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSW-DGKKVAFAQKPNAADEAVLHVID  153 (695)
T ss_dssp             EEETT-EEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECT-TSSEEEEEEEETTCSCCEEEEEE
T ss_pred             EEECC-EEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECC-CCCEEEEEECCCCCceEEEEEEE
Confidence            37888 666655443     3444454444432222      24555799999999 888888     455567899999


Q ss_pred             cCCCceE-EEeeccCCCCCceeEEEEecCCCceEEeeecCCc-------------EEEEeccccccccccceeecCCCCC
Q 022590           83 VQTGICI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT-------------VKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        83 ~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~-------------i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                      +.+++.+ ....    .......++|+| ++..|+.++.|..             |++|++.+....             
T Consensus       154 l~tg~~~~~~~~----~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~-------------  215 (695)
T 2bkl_A          154 VDSGEWSKVDVI----EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK-------------  215 (695)
T ss_dssp             TTTCCBCSSCCB----SCCTTCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG-------------
T ss_pred             CCCCCCcCCccc----CcccccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh-------------
Confidence            9998864 1111    111126899999 8888888887766             999999873211             


Q ss_pred             CCCceeeeceEEeecCCCceeeccee--cceEEEeeCCC----eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEE
Q 022590          149 FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN----EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF  222 (294)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  222 (294)
                            ...+.....+...+..+.|+  |++|+..+.++    .|.++|..+++          ...+..+........+
T Consensus       216 ------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~----------~~~l~~~~~~~~~~~~  279 (695)
T 2bkl_A          216 ------DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD----------FRLLVKGVGAKYEVHA  279 (695)
T ss_dssp             ------CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS----------CEEEEECSSCCEEEEE
T ss_pred             ------ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc----------eEEeecCCCceEEEEe
Confidence                  01122223345567777776  77887777655    67777654332          2223333444455555


Q ss_pred             cccCCcceEEEEc---CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          223 SCDFHYNAAAIGN---REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       223 ~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                       +++.  +++...   .++.|.+||+.+.+......+........+..++|+ ++.++++...|+..++|.+.
T Consensus       280 -~~g~--l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          280 -WKDR--FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             -ETTE--EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             -cCCc--EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence             6663  444443   368899999987653111122111223568888998 77788889999998888654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.67  E-value=6.3e-13  Score=105.05  Aligned_cols=248  Identities=10%  Similarity=0.017  Sum_probs=157.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCC--cEEEEEcCCC
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTG   86 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~   86 (294)
                      .....++|.  ++|+ ++++...++.|++||.++++....... ..... ++|++ +++.|+++..++  .|.+++...+
T Consensus       131 ~~P~~la~d--~~g~-lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAV--GNNT-VLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEEC--STTE-EEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEe--CCCC-EEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCC
Confidence            356778886  8898 788877889999999987766554443 23334 99999 777888887766  7888888766


Q ss_pred             ceEEEeeccCC-CCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           87 ICILIFAGAGG-HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        87 ~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      .....+..... ....+.+++++|.++. |+.+..++.|+.||............                   ....+.
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~~~~-------------------~~~g~~  264 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLIKQL-------------------ELSGSL  264 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEEEEC-------------------CCCSCC
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEEecc-------------------cccCCC
Confidence            55444411111 4456789999994455 44466788999999876321100000                   001111


Q ss_pred             Cc--eeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee------------cCCCCeeEEEEcccCCc
Q 022590          166 NY--VDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP------------VPECDIWFIKFSCDFHY  228 (294)
Q Consensus       166 ~~--i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~  228 (294)
                      ..  ...++|+   +.++++-...+.|+.|+......        .+....            ..-.....+++++++  
T Consensus       265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~--------~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG--  334 (409)
T 3hrp_A          265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECE--------WFCGSATQKTVQDGLREEALFAQPNGMTVDEDG--  334 (409)
T ss_dssp             CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE--------EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC--
T ss_pred             CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEE--------EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC--
Confidence            11  1266665   44555656778999998764210        000000            002347789999998  


Q ss_pred             ceEEEEc-CCCeEEEEeccCCCceeeeecc-cc---------ccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          229 NAAAIGN-REGKIFVWELQSSPPVLIARLS-HA---------QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       229 ~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-~~---------~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .++++-. .++.|+.|++.+++.....-.. ..         ..-.....++++++|.++++-..++.|+.++++
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            4677777 7899999997766422111110 00         012457899999999888888888999888763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.66  E-value=3.7e-12  Score=96.51  Aligned_cols=238  Identities=7%  Similarity=-0.064  Sum_probs=157.4

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccc-eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG   86 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~   86 (294)
                      ...+.++++.  ++|+ +.++...++.|.+||.. ++... .+..+...+.++++.+ ++.++++...++.|..+|.. +
T Consensus        19 ~~~p~~i~~d--~~g~-l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           19 DSGPYGITSS--EDGK-VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             TCCEEEEEEC--TTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcceeeEC--CCCC-EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-C
Confidence            4567777776  8898 67766678999999987 54332 2223346789999998 77777777667889999987 5


Q ss_pred             ceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590           87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  166 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (294)
                      +.. .+... .....+.++++.+ ++.++++...++.|..+|... ..                      ..........
T Consensus        93 ~~~-~~~~~-~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~----------------------~~~~~~~~~~  146 (300)
T 2qc5_A           93 GFT-EYPLP-QPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADG-TI----------------------YEYDLPNKGS  146 (300)
T ss_dssp             CEE-EEECS-STTCCEEEEEECS-TTCEEEEETTTTEEEEECTTS-CE----------------------EEEECSSTTC
T ss_pred             CeE-EecCC-CCCCCCccceECC-CCCEEEEccCCCeEEEECCCC-CE----------------------EEccCCCCCC
Confidence            543 33311 2346789999998 778777776678899998763 11                      0111111233


Q ss_pred             ceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          167 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       167 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      .+..+.++  +++.++...++.|..+|. .++.        .....+.....+..+++.+++  .+.++....+.|.+|+
T Consensus       147 ~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~--------~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~i~~~~  215 (300)
T 2qc5_A          147 YPAFITLGSDNALWFTENQNNSIGRITN-TGKL--------EEYPLPTNAAAPVGITSGNDG--ALWFVEIMGNKIGRIT  215 (300)
T ss_dssp             CEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--------EEEECSSTTCCEEEEEECTTS--SEEEEETTTTEEEEEC
T ss_pred             CceeEEECCCCCEEEEecCCCeEEEECC-CCcE--------EEeeCCCCCCCcceEEECCCC--CEEEEccCCCEEEEEc
Confidence            45666665  665666556788999998 3321        111122234567889999887  4666666677899999


Q ss_pred             ccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          245 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      . +++.. .....  .....+.+++++++|++.++...++.|..|+..
T Consensus       216 ~-~g~~~-~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          216 T-TGEIS-EYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             T-TCCEE-EEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred             C-CCcEE-EEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence            8 44322 22222  334568899999999977777677889888863

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=8.1e-13  Score=108.16  Aligned_cols=245  Identities=9%  Similarity=0.026  Sum_probs=159.8

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcC--CccccceecccCcceEEEEeC----CCCCceEEEee-CCCcEEEEE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVS--NEKLHKSFVGHGDSINEIRTQ----PLKPSLVVSAS-KDESVRLWN   82 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~--~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~~-~dg~i~vwd   82 (294)
                      .+..+.|+  |||+ ++++++.|+.|.+||+.  +++.+.++... .....++|+    | ++++++++. .+++|.++|
T Consensus       198 ~p~~v~~S--pDGr-~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD  272 (567)
T 1qks_A          198 AVHISRLS--ASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMD  272 (567)
T ss_dssp             CEEEEEEC--TTSC-EEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEE
T ss_pred             CccceEEC--CCCC-EEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCceeEEccccCC-CCCEEEEEEccCCeEEEEE
Confidence            44566665  9999 88889999999999995  77777777653 346789999    6 676666554 569999999


Q ss_pred             cCCCceEEEeeccCC-------CC-CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590           83 VQTGICILIFAGAGG-------HR-NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  154 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~-------~~-~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (294)
                      ..+.+.+..+.....       |. ..+..+..++.+..+++....+|.|.++|......                    
T Consensus       273 ~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~--------------------  332 (567)
T 1qks_A          273 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--------------------  332 (567)
T ss_dssp             TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE--------------------
T ss_pred             CCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc--------------------
Confidence            999998887763110       22 26788888885566677777789999999876211                    


Q ss_pred             eeceEEeecCCCceeeccee--cceEEEee-CCCeEEEecCCCCCCCCCCCCceeeeeeec-CCC--CeeEEE-EcccCC
Q 022590          155 QFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPV-PEC--DIWFIK-FSCDFH  227 (294)
Q Consensus       155 ~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~--~i~~~~-~~~~~~  227 (294)
                       ..+..+ ........+.|+  +++++++. .++.|.++|+.+++         ....... ...  +-.... +.|++.
T Consensus       333 -~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k---------l~~~i~vgg~~Phpg~g~~~~~p~~g  401 (567)
T 1qks_A          333 -LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK---------LVAIEDTGGQTPHPGRGANFVHPTFG  401 (567)
T ss_dssp             -EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE---------EEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred             -ceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc---------EEEEEeccCcCCCCccceeeECCCCC
Confidence             001111 122334455565  67766554 67899999999765         2333332 111  001222 577653


Q ss_pred             cceEEEEc-CCCeEEEEeccCCC-----ceeeeeccccccCCCeEEEEEccCCCEEEEecc-------CCcEEEEecCC
Q 022590          228 YNAAAIGN-REGKIFVWELQSSP-----PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE-------DGAIWRWDAIP  293 (294)
Q Consensus       228 ~~~l~~~~-~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------dg~i~vw~~~~  293 (294)
                       .+.+++. .++.|.++|..+.+     ...+..+...+  ..-..+..+|++++|.+...       .+.|.|+|+.+
T Consensus       402 -~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g--~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~  477 (567)
T 1qks_A          402 -PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG--GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKA  477 (567)
T ss_dssp             -EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC--SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGG
T ss_pred             -cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC--CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCc
Confidence             3445543 56899999998732     22334443211  22244778999999988652       45899999864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.65  E-value=9.5e-15  Score=113.03  Aligned_cols=174  Identities=10%  Similarity=-0.000  Sum_probs=126.6

Q ss_pred             ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc-----------eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc
Q 022590           55 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-----------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT  123 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~  123 (294)
                      +++.+++++ ...++++|+.++ +++|++....           .....    .+.. |+.++|   ++..|+++ .++.
T Consensus        39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~----~lp~-V~~l~f---d~~~L~v~-~~~~  107 (388)
T 1xip_A           39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK----EIPD-VIFVCF---HGDQVLVS-TRNA  107 (388)
T ss_dssp             CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE----ECTT-EEEEEE---ETTEEEEE-ESSE
T ss_pred             cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe----eCCC-eeEEEE---CCCEEEEE-cCCc
Confidence            689999999 788899999875 5569875433           11222    2666 999999   55777777 8899


Q ss_pred             EEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCC
Q 022590          124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGT  203 (294)
Q Consensus       124 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  203 (294)
                      |++||+++..                       .......|...+.++.+....++++..||.+.+||+..+..      
T Consensus       108 l~v~dv~sl~-----------------------~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~------  158 (388)
T 1xip_A          108 LYSLDLEELS-----------------------EFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST------  158 (388)
T ss_dssp             EEEEESSSTT-----------------------CEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE------
T ss_pred             EEEEEchhhh-----------------------ccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc------
Confidence            9999999842                       12223445556677666654588899999999999986642      


Q ss_pred             ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc-------ccccCCCeEEEEEccCCCE
Q 022590          204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-------HAQSKSPIRQTAMSYDGST  276 (294)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~  276 (294)
                         ..    ....+.+++|+|+|    ++.|..||.+++|+....+......+.       +.+|...|.++.|.+++.+
T Consensus       159 ---~~----~~~~Vs~v~WSpkG----~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~f  227 (388)
T 1xip_A          159 ---KQ----LAQNVTSFDVTNSQ----LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDF  227 (388)
T ss_dssp             ---EE----EEESEEEEEECSSE----EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEE
T ss_pred             ---cc----ccCCceEEEEcCCc----eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeE
Confidence               11    23469999999998    577889999999988876521122221       1135688999999999998


Q ss_pred             EEE
Q 022590          277 ILS  279 (294)
Q Consensus       277 l~s  279 (294)
                      |++
T Consensus       228 lv~  230 (388)
T 1xip_A          228 LAV  230 (388)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            887

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.65  E-value=3.7e-13  Score=101.98  Aligned_cols=204  Identities=7%  Similarity=-0.112  Sum_probs=136.6

Q ss_pred             ccceecccCcceEEEEeCCCCCc-eEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc
Q 022590           45 LHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT  123 (294)
Q Consensus        45 ~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~  123 (294)
                      .+..+..+.....+++|+| +++ +++++..++.|..||..++  ...+.   .+...+.+++++| ++.++++...++.
T Consensus        19 ~~~~l~~~~~~~eg~~~d~-~g~~l~~~~~~~~~i~~~~~~~~--~~~~~---~~~~~~~~l~~~~-dg~l~v~~~~~~~   91 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVP-ARSAVIFSDVRQNRTWAWSDDGQ--LSPEM---HPSHHQNGHCLNK-QGHLIACSHGLRR   91 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEG-GGTEEEEEEGGGTEEEEEETTSC--EEEEE---SSCSSEEEEEECT-TCCEEEEETTTTE
T ss_pred             cEEEEecCCccccCCeEeC-CCCEEEEEeCCCCEEEEEECCCC--eEEEE---CCCCCcceeeECC-CCcEEEEecCCCe
Confidence            3445555666788999999 666 8888888999999999877  55555   3667899999999 8887777777789


Q ss_pred             EEEEeccccccccccceeecCCCCCCCCceeeeceEEee-cCCCceeeccee--cceEEE----ee-------------C
Q 022590          124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRWL--GDFILS----KS-------------V  183 (294)
Q Consensus       124 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~l~~----~~-------------~  183 (294)
                      |.+||..++....                    ...... .....+..+.++  |+++++    ++             .
T Consensus        92 i~~~d~~~g~~~~--------------------~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~  151 (296)
T 3e5z_A           92 LERQREPGGEWES--------------------IADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELP  151 (296)
T ss_dssp             EEEECSTTCCEEE--------------------EECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSS
T ss_pred             EEEEcCCCCcEEE--------------------EeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCC
Confidence            9999986532100                    000000 111234556665  666665    33             1


Q ss_pred             CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc-CCCc-eeeeecccccc
Q 022590          184 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPP-VLIARLSHAQS  261 (294)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~-~~~~~~~~~~~  261 (294)
                      .+.|..++.. ++          +............++|+|+++  .+++.+.++.|++|++. .++. .....+.  .+
T Consensus       152 ~~~l~~~~~~-g~----------~~~~~~~~~~~~gi~~s~dg~--~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~--~~  216 (296)
T 3e5z_A          152 GRWVFRLAPD-GT----------LSAPIRDRVKPNGLAFLPSGN--LLVSDTGDNATHRYCLNARGETEYQGVHFT--VE  216 (296)
T ss_dssp             SCEEEEECTT-SC----------EEEEECCCSSEEEEEECTTSC--EEEEETTTTEEEEEEECSSSCEEEEEEEEC--CS
T ss_pred             CcEEEEECCC-CC----------EEEeecCCCCCccEEECCCCC--EEEEeCCCCeEEEEEECCCCcCcCCCeEee--CC
Confidence            3466666654 21          233334455678899999994  56888888999999997 3432 1112221  33


Q ss_pred             CCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          262 KSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       262 ~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ...+..++++++|+++++.  ++.|.+|+.+
T Consensus       217 ~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          217 PGKTDGLRVDAGGLIWASA--GDGVHVLTPD  245 (296)
T ss_dssp             SSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred             CCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence            4557789999999877766  7889999865

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.64  E-value=2.4e-12  Score=100.36  Aligned_cols=236  Identities=8%  Similarity=-0.063  Sum_probs=146.3

Q ss_pred             EEEEeecCCCceEEEEee----------cCCeEEEEEcCCccccceeccc-------CcceEEEEeCCCCCceEEEeeC-
Q 022590           13 TVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH-------GDSINEIRTQPLKPSLVVSASK-   74 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~~~-   74 (294)
                      .++++  |||+ +++++.          .++.|.+||..+.+.+..+...       ......++|+| ++++|+.+.. 
T Consensus        70 ~i~~s--pDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~  145 (373)
T 2mad_H           70 NPVAA--HSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFA  145 (373)
T ss_pred             CeEEC--CCCC-EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecC
Confidence            55555  9999 666664          3678999999988877766432       12346899999 8888887764 


Q ss_pred             -CCcEEEEEcCCCceEEE-eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCc
Q 022590           75 -DESVRLWNVQTGICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTK  152 (294)
Q Consensus        75 -dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  152 (294)
                       ++.|.++| .+++.+.. +.    ...   ++.+.|.+...+++.+.||.+.++|. ..........            
T Consensus       146 ~~~~v~viD-~t~~~~~~~i~----~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~------------  204 (373)
T 2mad_H          146 AGPAVGLVV-QGGSSDDQLLS----SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLV------------  204 (373)
T ss_pred             CCCeEEEEE-CCCCEEeEEcC----CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEec------------
Confidence             57899999 99988777 54    222   24555645567778888999999999 6322100000            


Q ss_pred             eeeeceEEeecCCCce-eeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec----------CCCCeeE
Q 022590          153 YVQFPVFIASVHSNYV-DCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----------PECDIWF  219 (294)
Q Consensus       153 ~~~~~~~~~~~~~~~i-~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~  219 (294)
                         .+..   ....++ ....+.  +..++..+.++.+.+.|+......       .+..+..          .......
T Consensus       205 ---~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~-------v~~~~~~~~~~~~~~~~~p~g~~~  271 (373)
T 2mad_H          205 ---GAML---TAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGAT-------NKAPIDALSGGRKADTWRPGGWQQ  271 (373)
T ss_pred             ---cccc---cCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcce-------EeeeeeecCCcccccceecCceEe
Confidence               0000   001111 111121  233333346788999998654211       1111111          1122445


Q ss_pred             EEEcccCCcceEEEEc----------CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEec-cCCcEE
Q 022590          220 IKFSCDFHYNAAAIGN----------REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCC-EDGAIW  287 (294)
Q Consensus       220 ~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~-~dg~i~  287 (294)
                      +.++|+++  .+++..          ..+.|.++|+.+.+..  ..+...   .....++|+|||+ +++++. .++.|.
T Consensus       272 ~~~s~d~~--~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv--~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~V~  344 (373)
T 2mad_H          272 VAYLKSSD--GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS--SQISLG---HDVDAISVAQDGGPDLYALSAGTEVLH  344 (373)
T ss_pred             EEECCCCC--EEEEEeccCCcccccCCCCeEEEEECCCCEEE--EEEECC---CCcCeEEECCCCCeEEEEEcCCCCeEE
Confidence            78899885  344332          2467999999988643  333311   3578999999999 777777 589999


Q ss_pred             EEecCC
Q 022590          288 RWDAIP  293 (294)
Q Consensus       288 vw~~~~  293 (294)
                      ++|+++
T Consensus       345 ViD~~t  350 (373)
T 2mad_H          345 IYDAGA  350 (373)
T ss_pred             EEECCC
Confidence            999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=1.2e-11  Score=93.70  Aligned_cols=235  Identities=8%  Similarity=-0.053  Sum_probs=152.1

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccc-eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ..+.++++.  ++|+ +.++...++.|..+|.. ++... .+......+.++++.+ ++.++++...++.|..+|.. ++
T Consensus        62 ~~~~~i~~~--~~g~-l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~  135 (300)
T 2qc5_A           62 AKVMCLIVS--SLGD-IWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GT  135 (300)
T ss_dssp             CCEEEEEEC--TTSC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SC
T ss_pred             CcceeEEEC--CCCC-EEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CC
Confidence            456777775  8887 66666667899999987 54421 2222346789999998 77887777768899999987 55


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      ... +.. ......+.++++.+ ++.++++...++.|..+|... ..                      .......+...
T Consensus       136 ~~~-~~~-~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g-~~----------------------~~~~~~~~~~~  189 (300)
T 2qc5_A          136 IYE-YDL-PNKGSYPAFITLGS-DNALWFTENQNNSIGRITNTG-KL----------------------EEYPLPTNAAA  189 (300)
T ss_dssp             EEE-EEC-SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTC-CE----------------------EEEECSSTTCC
T ss_pred             EEE-ccC-CCCCCCceeEEECC-CCCEEEEecCCCeEEEECCCC-cE----------------------EEeeCCCCCCC
Confidence            442 221 12445789999998 777666666678899998732 10                      01111122344


Q ss_pred             eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      +..+.++  +++.++....+.|.+||. +++.        ...........+..+++.+++  .+.++...++.|..||.
T Consensus       190 ~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~--------~~~~~~~~~~~~~~i~~d~~g--~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          190 PVGITSGNDGALWFVEIMGNKIGRITT-TGEI--------SEYDIPTPNARPHAITAGKNS--EIWFTEWGANQIGRITN  258 (300)
T ss_dssp             EEEEEECTTSSEEEEETTTTEEEEECT-TCCE--------EEEECSSTTCCEEEEEECSTT--CEEEEETTTTEEEEECT
T ss_pred             cceEEECCCCCEEEEccCCCEEEEEcC-CCcE--------EEEECCCCCCCceEEEECCCC--CEEEeccCCCeEEEECC
Confidence            5666665  556665556778999998 3321        111122234567889999987  45666666789999998


Q ss_pred             cCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          246 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      . ++. ......  .....+.+++++++|++.++.. . .|..+|.+
T Consensus       259 ~-g~~-~~~~~~--~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          259 D-NTI-QEYQLQ--TENAEPHGITFGKDGSVWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             T-SCE-EEEECC--STTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred             C-CcE-EEEECC--ccCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence            3 332 222222  2335688999999998777665 4 67777654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.61  E-value=6.9e-12  Score=95.03  Aligned_cols=233  Identities=8%  Similarity=0.014  Sum_probs=144.0

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ..--.+..|+  |++..++++...++.|..||..+++. ..+. ....+.++++++ +++++++ . +..|.+||..+++
T Consensus        12 ~~~~Egp~w~--~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~   84 (297)
T 3g4e_A           12 CRCGESPVWE--EVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQS   84 (297)
T ss_dssp             CSBEEEEEEE--TTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTE
T ss_pred             CccccCCeEE--CCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCc
Confidence            3445577887  75444778888889999999987664 3332 457899999999 7775554 4 5679999998776


Q ss_pred             eEEEeeccCC-CCCceeEEEEecCCCceEEeeecC---------CcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           88 CILIFAGAGG-HRNEVLSVDFHPSDIYRIASCGMD---------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        88 ~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      .........+ ....++.++++| +++++++...+         ..-.+|.+....                       .
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-----------------------~  140 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDH-----------------------H  140 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-----------------------C
T ss_pred             EEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCC-----------------------C
Confidence            5443331111 224588999999 77766654322         234555554310                       0


Q ss_pred             eEEeecCCCceeeccee--cceE-EEeeCCCeEEEecCC--CCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEE
Q 022590          158 VFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPK--MKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      .............++|+  ++.+ ++.+.++.|.+||+.  ++..    .....+..+......+..+++.+++  ++.+
T Consensus       141 ~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~----~~~~~~~~~~~~~~~p~g~~~d~~G--~lwv  214 (297)
T 3g4e_A          141 VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI----SNRRSVYKLEKEEQIPDGMCIDAEG--KLWV  214 (297)
T ss_dssp             EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE----EEEEEEEECCGGGCEEEEEEEBTTS--CEEE
T ss_pred             EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc----cCcEEEEECCCCCCCCCeeEECCCC--CEEE
Confidence            11111222334567776  5555 555667899999874  3321    0011222222223457789999988  5666


Q ss_pred             EEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEc-cCCCEEEEec
Q 022590          233 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGSTILSCC  281 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~  281 (294)
                      +....+.|..||..+++.......    +...+++++|. |+++.|..++
T Consensus       215 a~~~~~~v~~~d~~tG~~~~~i~~----p~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          215 ACYNGGRVIRLDPVTGKRLQTVKL----PVDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             EEETTTEEEEECTTTCCEEEEEEC----SSSBEEEEEEESGGGCEEEEEE
T ss_pred             EEcCCCEEEEEcCCCceEEEEEEC----CCCCceEEEEeCCCCCEEEEEc
Confidence            666778899999987764333322    23568999998 8887665443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.60  E-value=1.2e-12  Score=101.03  Aligned_cols=238  Identities=10%  Similarity=0.027  Sum_probs=149.2

Q ss_pred             EEEeecCCCceEEEEee----------cCCeEEEEEcCCccccceecccC-------cceEEEEeCCCCCceEEEeeC--
Q 022590           14 VSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGHG-------DSINEIRTQPLKPSLVVSASK--   74 (294)
Q Consensus        14 ~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~l~s~~~--   74 (294)
                      ++++  |||+ +++++.          .++.|.+||..+++.+.++....       .....++|+| ++++++.+..  
T Consensus        83 va~s--pDG~-~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~  158 (386)
T 3sjl_D           83 PVVA--DDGS-FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSP  158 (386)
T ss_dssp             EEEC--TTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSS
T ss_pred             EEEC--CCCC-EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCC
Confidence            6665  9999 665554          36789999999999888775321       2456799999 8887777753  


Q ss_pred             CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590           75 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  154 (294)
Q Consensus        75 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (294)
                      ++.|.++|+.+++.+..+..    .+.  ...+ |.+...+++.+.||.+.+.++........   ...   .       
T Consensus       159 ~~~VsVID~~t~~vv~tI~v----~g~--~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~---~~~---~-------  218 (386)
T 3sjl_D          159 APAVGVVDLEGKAFKRMLDV----PDC--YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEI---THT---E-------  218 (386)
T ss_dssp             SCEEEEEETTTTEEEEEEEC----CSE--EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEE---EEC---C-------
T ss_pred             CCeEEEEECCCCcEEEEEEC----CCc--ceee-cCCCceeEEECCCCCEEEEECCCCCeEEE---eec---c-------
Confidence            68999999999999988863    221  2223 43667788888999999999876211100   000   0       


Q ss_pred             eeceEEeecCCCcee-eccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee----------cCCCCeeEE
Q 022590          155 QFPVFIASVHSNYVD-CNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP----------VPECDIWFI  220 (294)
Q Consensus       155 ~~~~~~~~~~~~~i~-~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~  220 (294)
                           .+..-..++. ...|.   |.+++ .+.+|.+.+.|+......       ....+.          ........+
T Consensus       219 -----~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~-------v~~~~~~~~~~~~~~g~~p~g~q~~  285 (386)
T 3sjl_D          219 -----VFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAK-------FLPAVEALTEAERADGWRPGGWQQV  285 (386)
T ss_dssp             -----CCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCE-------ECCCEESSCHHHHHTTEEECSSSCE
T ss_pred             -----eeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcce-------eecceeccccccccccccCCCccee
Confidence                 0000011111 12332   44444 455899999999765321       111111          001233457


Q ss_pred             EEcccCCcceEEEEc--------CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEe-ccCCcEEEEe
Q 022590          221 KFSCDFHYNAAAIGN--------REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSC-CEDGAIWRWD  290 (294)
Q Consensus       221 ~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~-~~dg~i~vw~  290 (294)
                      +++++++..|++...        ..+.|.++|+.+.+.+....+.     ..+..+++++|++ +|+++ ..++.|.++|
T Consensus       286 a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-----~~~~~lavs~D~~~~ly~tn~~~~~VsViD  360 (386)
T 3sjl_D          286 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-----HEIDSINVSQDEKPLLYALSTGDKTLYIHD  360 (386)
T ss_dssp             EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-----EEECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred             eECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-----CCcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence            778888533333321        1357999999998754443332     3578999999997 66664 5689999999


Q ss_pred             cCC
Q 022590          291 AIP  293 (294)
Q Consensus       291 ~~~  293 (294)
                      ..+
T Consensus       361 ~~t  363 (386)
T 3sjl_D          361 AES  363 (386)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.59  E-value=5.5e-13  Score=99.62  Aligned_cols=197  Identities=7%  Similarity=-0.082  Sum_probs=133.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ..+.++++.  ++|+ ++++.. ++.|.+||....... .+. .....+..+++.+ +++++++...++.|.+|+..+..
T Consensus        67 ~~p~~i~~~--~~g~-l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~  140 (270)
T 1rwi_B           67 YQPQGLAVD--GAGT-VYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKT  140 (270)
T ss_dssp             CSCCCEEEC--TTCC-EEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCS
T ss_pred             CCcceeEEC--CCCC-EEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCce
Confidence            456677776  8887 666655 889999998765432 232 2335789999999 77888777778899999765544


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      ......   .....+.+++++| +++++++...++.|.+||......                       ......+...
T Consensus       141 ~~~~~~---~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-----------------------~~~~~~~~~~  193 (270)
T 1rwi_B          141 QTVLPF---TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQ-----------------------VVLPFTDITA  193 (270)
T ss_dssp             CEECCC---CSCCSCCCEEECT-TCCEEEEEGGGTEEEEECTTTCCE-----------------------EECCCSSCCS
T ss_pred             eEeecc---ccCCCceeEEEeC-CCCEEEEECCCCEEEEEecCCCce-----------------------EeecccCCCC
Confidence            332221   2334678999999 777777777788999999876211                       1111112244


Q ss_pred             eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      +..++++  +.++++...++.|.+||......         ..........+..+++++++  .++++...++.|+++++
T Consensus       194 p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~---------~~~~~~~~~~p~~i~~~~~g--~l~v~~~~~~~v~~~~~  262 (270)
T 1rwi_B          194 PWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS---------TVLPFTGLNTPLAVAVDSDR--TVYVADRGNDRVVKLTS  262 (270)
T ss_dssp             EEEEEECTTCCEEEEETTTSCEEEECTTCSCC---------EECCCCSCSCEEEEEECTTC--CEEEEEGGGTEEEEECC
T ss_pred             ceEEEECCCCCEEEEECCCCcEEEEcCCCCcc---------eeeccCCCCCceeEEECCCC--CEEEEECCCCEEEEEcC
Confidence            5667776  55666666688999999865431         11111122457889999988  57888888999999998


Q ss_pred             cCCC
Q 022590          246 QSSP  249 (294)
Q Consensus       246 ~~~~  249 (294)
                      ...+
T Consensus       263 ~~~~  266 (270)
T 1rwi_B          263 LEHH  266 (270)
T ss_dssp             CGGG
T ss_pred             CCcc
Confidence            7654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.57  E-value=2.4e-12  Score=96.17  Aligned_cols=179  Identities=13%  Similarity=0.065  Sum_probs=126.9

Q ss_pred             CceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC-CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecC
Q 022590           66 PSLVVSASKDESVRLWNVQTGICILIFAGAGGHR-NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD  144 (294)
Q Consensus        66 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  144 (294)
                      +++|++++.|+.|.+||.++++.+..+..   +. ..+.++.+.| ++++++  +.++.|..||. +++           
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~---~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~-----------   66 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPL---EKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGR-----------   66 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEEC---CTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSC-----------
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCC---CccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCC-----------
Confidence            57899999999999999999999999883   44 4689999999 888777  34678999998 422           


Q ss_pred             CCCCCCCceeeeceEEeecC-CCceeeccee--cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeeec------CC
Q 022590          145 LPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPV------PE  214 (294)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~------~~  214 (294)
                                  .+..+..+ ...+.++.+.  |+++++.+. ++.+..+|. +++         .+..+..      +.
T Consensus        67 ------------~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk---------~l~~~~~~~~~~~~~  124 (276)
T 3no2_A           67 ------------ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGE---------VLSKTEFETGIERPH  124 (276)
T ss_dssp             ------------EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSC---------EEEEEEECCSCSSGG
T ss_pred             ------------EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCC---------EEEEEeccCCCCccc
Confidence                        12222222 1234444443  888888777 778888886 333         2222221      11


Q ss_pred             CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          215 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       215 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .....+++.+++  .++++...++.|..||.+ ++.+......     ....++...++|+++++++.++.|..+|.+
T Consensus       125 ~~~~~v~~~~~G--~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~  194 (276)
T 3no2_A          125 AQFRQINKNKKG--NYLVPLFATSEVREIAPN-GQLLNSVKLS-----GTPFSSAFLDNGDCLVACGDAHCFVQLNLE  194 (276)
T ss_dssp             GSCSCCEECTTS--CEEEEETTTTEEEEECTT-SCEEEEEECS-----SCCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred             ccccCceECCCC--CEEEEecCCCEEEEECCC-CCEEEEEECC-----CCccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence            233445677777  689999999999999998 7644443332     345667888999999999888889888865

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.57  E-value=2.3e-13  Score=105.37  Aligned_cols=174  Identities=9%  Similarity=-0.018  Sum_probs=126.6

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc---------cc-ceecccCcceEEEEeCCCCCceEEEeeCCCcE
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK---------LH-KSFVGHGDSINEIRTQPLKPSLVVSASKDESV   78 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~-~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i   78 (294)
                      .+++.++++  +... ++++|+.+ .+.+|++++.+         .. .....+.. |+.|+|   ++..|+++ .++.|
T Consensus        38 ~~~nlLais--~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f---d~~~L~v~-~~~~l  108 (388)
T 1xip_A           38 ASLQNLDIS--NSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF---HGDQVLVS-TRNAL  108 (388)
T ss_dssp             SCCBCEEEE--TTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE---ETTEEEEE-ESSEE
T ss_pred             ccccEEEEc--CCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE---CCCEEEEE-cCCcE
Confidence            468899998  7777 89999888 56669876543         11 12234666 999999   56788888 88999


Q ss_pred             EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      ++||+.+........   .|..++.++.+.+ . + ++++..||.+.+||+....                       ..
T Consensus       109 ~v~dv~sl~~~~~~~---~~~~~v~~i~~~~-p-~-~av~~~dG~L~v~dl~~~~-----------------------~~  159 (388)
T 1xip_A          109 YSLDLEELSEFRTVT---SFEKPVFQLKNVN-N-T-LVILNSVNDLSALDLRTKS-----------------------TK  159 (388)
T ss_dssp             EEEESSSTTCEEEEE---ECSSCEEEEEECS-S-E-EEEEETTSEEEEEETTTCC-----------------------EE
T ss_pred             EEEEchhhhccCccc---eeecceeeEEecC-C-C-EEEEECCCCEEEEEccCCc-----------------------cc
Confidence            999998777655555   4777888888775 3 3 8888999999999998631                       11


Q ss_pred             EEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee------e---cCCCCeeEEEEcccCCcc
Q 022590          159 FIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY------P---VPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~---~~~~~i~~~~~~~~~~~~  229 (294)
                          .+...|+|++|+.+-++.|..||.+++|+....+.       .....+      .   .+...+.++.|.+++  .
T Consensus       160 ----~~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~~~-------~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~--~  226 (388)
T 1xip_A          160 ----QLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGEM-------EKQFEFSLPSELEELPVEEYSPLSVTILSPQ--D  226 (388)
T ss_dssp             ----EEEESEEEEEECSSEEEEEETTSCEEEEEEETTEE-------EEEEEECCCHHHHTSCTTTSEEEEEEESSSS--E
T ss_pred             ----cccCCceEEEEcCCceEEEEcCCcEEEEcCCCccc-------cccceecCCcccccccCCCeeEEEEEEecCC--e
Confidence                13458999999955588999999999998875431       002222      1   256779999999987  4


Q ss_pred             eEEE
Q 022590          230 AAAI  233 (294)
Q Consensus       230 ~l~~  233 (294)
                      ++++
T Consensus       227 flv~  230 (388)
T 1xip_A          227 FLAV  230 (388)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5555

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.53  E-value=1.1e-11  Score=94.25  Aligned_cols=229  Identities=7%  Similarity=-0.074  Sum_probs=140.6

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ........|.  |+|+.+++++..++.|..|+. +++ ...+..+...+..+++++ +++++++...++.|..|+.. ++
T Consensus        44 ~~~~egp~~~--~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           44 ATWSEGPAWW--EAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             CSSEEEEEEE--GGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SC
T ss_pred             CcCccCCeEe--CCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CC
Confidence            3445678887  888757778888899999997 444 345555667889999999 77776665566789999985 55


Q ss_pred             eEEEeeccCC-CCCceeEEEEecCCCceEEe----eec-------------CCcEEEEeccccccccccceeecCCCCCC
Q 022590           88 CILIFAGAGG-HRNEVLSVDFHPSDIYRIAS----CGM-------------DNTVKIWSMKEFWTYVEKSFTWTDLPSKF  149 (294)
Q Consensus        88 ~~~~~~~~~~-~~~~v~~l~~~~~~~~~l~~----~~~-------------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~  149 (294)
                      .........+ ....+.++++.| ++.++++    |..             .+.|..+|..++..               
T Consensus       118 ~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~---------------  181 (305)
T 3dr2_A          118 AHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL---------------  181 (305)
T ss_dssp             EEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC---------------
T ss_pred             EEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE---------------
Confidence            4332221111 123467899999 8887775    332             24566666544210               


Q ss_pred             CCceeeeceEEeecCCCceeeccee--cceEEEeeCC------CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEE
Q 022590          150 PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK  221 (294)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  221 (294)
                               .... .......++|+  ++.|+.+...      +.|.+||+.....    ......  ..........++
T Consensus       182 ---------~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l----~~~~~~--~~~~~~~pdgi~  245 (305)
T 3dr2_A          182 ---------QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGAL----HDRRHF--ASVPDGLPDGFC  245 (305)
T ss_dssp             ---------EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEE----EEEEEE--ECCSSSCCCSEE
T ss_pred             ---------EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCc----cCCeEE--EECCCCCCCeEE
Confidence                     0111 22334566676  6667666554      7899999864320    000011  111223345688


Q ss_pred             EcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC
Q 022590          222 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       222 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                      +.+++  + |.++..+ .|.+|+.. ++.  ...+..  . ..+.+++|+|+++.|..++.++
T Consensus       246 ~d~~G--~-lwv~~~~-gv~~~~~~-g~~--~~~~~~--~-~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          246 VDRGG--W-LWSSSGT-GVCVFDSD-GQL--LGHIPT--P-GTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             ECTTS--C-EEECCSS-EEEEECTT-SCE--EEEEEC--S-SCCCEEEECTTSCEEEEEETTE
T ss_pred             ECCCC--C-EEEecCC-cEEEECCC-CCE--EEEEEC--C-CceeEEEEeCCCCEEEEEcCCe
Confidence            88888  3 4444444 49999984 332  223321  1 2488999999998888877665

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.53  E-value=7.7e-12  Score=98.20  Aligned_cols=258  Identities=9%  Similarity=-0.029  Sum_probs=150.8

Q ss_pred             cCCCceEEEEeec-C----CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee----------CCCcEEEEEc
Q 022590           19 NVDGIPFLVAGGI-N----GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS----------KDESVRLWNV   83 (294)
Q Consensus        19 ~~~~~~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~dg~i~vwd~   83 (294)
                      .++++ .+++... +    +.|.++|..+++.+.++..-..+  .++++| +++.|+.+.          .++.|.++|.
T Consensus        81 ~~~~~-~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~  156 (426)
T 3c75_H           81 APDAR-RVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDP  156 (426)
T ss_dssp             CCCTT-EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             CCCCC-EEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECC-CCCEEEEEeccccccccCCCCCEEEEEEC
Confidence            36676 4444443 3    69999999999999988865556  899999 777776665          4678999999


Q ss_pred             CCCceEEEeecc-CC---CCCceeEEEEecCCCceEEeeec--CCcEEEEeccccccccccceeec----CCCCC-CCCc
Q 022590           84 QTGICILIFAGA-GG---HRNEVLSVDFHPSDIYRIASCGM--DNTVKIWSMKEFWTYVEKSFTWT----DLPSK-FPTK  152 (294)
Q Consensus        84 ~~~~~~~~~~~~-~~---~~~~v~~l~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~----~~~~~-~~~~  152 (294)
                      .+++.+..+... ..   .......+.|+| ++++++++..  ++.|.+.|+.+.+..........    ..... +...
T Consensus       157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~  235 (426)
T 3c75_H          157 VTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMN  235 (426)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEE
T ss_pred             CCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEE
Confidence            999998887631 00   123467899999 7777777763  57899999998544322211000    00000 0000


Q ss_pred             eeeeceEEeecCCCcee----------------eccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec--
Q 022590          153 YVQFPVFIASVHSNYVD----------------CNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--  212 (294)
Q Consensus       153 ~~~~~~~~~~~~~~~i~----------------~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--  212 (294)
                      .....+.........+.                .+.+.  +..++.....+.+.+.|.......       .+..+..  
T Consensus       236 ~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~-------v~~~~~~~~  308 (426)
T 3c75_H          236 CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGAT-------FRAPIEALT  308 (426)
T ss_dssp             ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEE-------ECCCEESSC
T ss_pred             cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceE-------Eeeeeeecc
Confidence            00000000000001110                11122  344444455677777777543210       0011100  


Q ss_pred             --------CCCCeeEEEEcccCCcceEEEEc--------CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-
Q 022590          213 --------PECDIWFIKFSCDFHYNAAAIGN--------REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-  275 (294)
Q Consensus       213 --------~~~~i~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-  275 (294)
                              .......++++|+++..|++...        ..+.|.++|+.+.+.+......     .....++|+|||+ 
T Consensus       309 ~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-----~~P~gia~spDg~~  383 (426)
T 3c75_H          309 EAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-----HEIDSINVSQDAEP  383 (426)
T ss_dssp             TTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-----EEECEEEECCSSSC
T ss_pred             ccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-----CCcCeEEEccCCCE
Confidence                    00112236899998632332221        2357999999998744433332     2478899999999 


Q ss_pred             EEEEec-cCCcEEEEecCC
Q 022590          276 TILSCC-EDGAIWRWDAIP  293 (294)
Q Consensus       276 ~l~s~~-~dg~i~vw~~~~  293 (294)
                      ++++.. .++.|.|+|+.+
T Consensus       384 ~lyv~n~~s~~VsVID~~t  402 (426)
T 3c75_H          384 LLYALSAGTQTLHIYDAAT  402 (426)
T ss_dssp             EEEEEETTTTEEEEEETTT
T ss_pred             EEEEEcCCCCeEEEEECCC
Confidence            888877 589999999875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.52  E-value=5.5e-12  Score=106.63  Aligned_cols=243  Identities=9%  Similarity=0.050  Sum_probs=141.2

Q ss_pred             cCceeEEEEEeecCCCceEEEEe-----ecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCC-----
Q 022590            7 KEESFYTVSWACNVDGIPFLVAG-----GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE-----   76 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-----   76 (294)
                      |...+..++|+  |||+ +||.+     +....|++||+.+++.+... .+......++|+  |++.|+.++.+.     
T Consensus       127 ~~~~l~~~~~S--pDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws--Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          127 GTTALDQLSFS--RDGR-ILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL--GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             SCCEEEEEEEC--TTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE--TTTEEEEEESSCCC---
T ss_pred             CcEEEEEEEEC--CCCC-EEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe--CCCEEEEEEecCccccc
Confidence            44567777776  9999 66633     23357999999998864431 111113578899  455666666653     


Q ss_pred             --------cEEEEEcCCCce--EEEeeccCC-CCCceeEEEEecCCCceEEee-e---cCCcEEEEecccccccccccee
Q 022590           77 --------SVRLWNVQTGIC--ILIFAGAGG-HRNEVLSVDFHPSDIYRIASC-G---MDNTVKIWSMKEFWTYVEKSFT  141 (294)
Q Consensus        77 --------~i~vwd~~~~~~--~~~~~~~~~-~~~~v~~l~~~~~~~~~l~~~-~---~dg~i~~wd~~~~~~~~~~~~~  141 (294)
                              .|.+|++.++..  ...+.. .. |......+.|+| ++.+|+.. +   .++.|+++|+.....       
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~-------  271 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENA-------  271 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTC-------
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCC-------
Confidence                    399999987653  223321 12 344578899999 66666443 3   235899999876310       


Q ss_pred             ecCCCCCCCCceeeeceEEeecCCCceee-cceecceEEEee-C---CCeEEEecCCCCCCCCCCCCceeeeeeecCCCC
Q 022590          142 WTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWLGDFILSKS-V---DNEIVLWEPKMKEQSPGEGTADILQKYPVPECD  216 (294)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  216 (294)
                                     ....+..+...... +...++.|+..+ .   .+.|..+|+.++...       ....+..+...
T Consensus       272 ---------------~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-------~~~~l~~~~~~  329 (693)
T 3iuj_A          272 ---------------PLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-------HWRDLIPERQQ  329 (693)
T ss_dssp             ---------------CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-------GCEEEECCCSS
T ss_pred             ---------------ceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-------ccEEEecCCCC
Confidence                           12222333333332 222355444333 3   367999998865310       12233333444


Q ss_pred             eeEEEEcccCCcceEEEEcCCC--eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC----CcEEEEe
Q 022590          217 IWFIKFSCDFHYNAAAIGNREG--KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED----GAIWRWD  290 (294)
Q Consensus       217 i~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~i~vw~  290 (294)
                      +.  .|+++++ .++++...++  .|++|++....   ...+.. .....+..+.++|+++.|+....+    +.++.||
T Consensus       330 ~~--~~s~~g~-~lv~~~~~~g~~~l~~~d~~g~~---~~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          330 VL--TVHSGSG-YLFAEYMVDATARVEQFDYEGKR---VREVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             CE--EEEEETT-EEEEEEEETTEEEEEEECTTSCE---EEEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             EE--EEEEECC-EEEEEEEECCeeEEEEEECCCCe---eEEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            43  8899885 2334444454  68888887542   222221 223457778888888877665444    7888888


Q ss_pred             cCC
Q 022590          291 AIP  293 (294)
Q Consensus       291 ~~~  293 (294)
                      +.+
T Consensus       403 ~~~  405 (693)
T 3iuj_A          403 PKS  405 (693)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.51  E-value=2.3e-10  Score=87.82  Aligned_cols=226  Identities=9%  Similarity=-0.047  Sum_probs=136.4

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL   90 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~   90 (294)
                      ..+.+|+  |++..++++...++.|..||..+++.. .+. ....+.+++|++ +++++++. .+ .|.+||..+++...
T Consensus        51 ~egp~~~--~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           51 GEGPTFD--PASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTL  123 (326)
T ss_dssp             EEEEEEE--TTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEE
T ss_pred             CcCCeEe--CCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEE
Confidence            4567787  765547778878899999999876542 333 356799999999 77776654 44 49999998877543


Q ss_pred             EeeccCCC-CCceeEEEEecCCCceEEeeec------CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           91 IFAGAGGH-RNEVLSVDFHPSDIYRIASCGM------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        91 ~~~~~~~~-~~~v~~l~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      ........ ...+.+++++| ++.++++...      .+.|..++  ...                        ...+..
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~------------------------~~~~~~  176 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGK------------------------VTKLFA  176 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTE------------------------EEEEEE
T ss_pred             EeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCc------------------------EEEeeC
Confidence            32211111 24689999999 7776655432      23444444  211                        000111


Q ss_pred             CCCceeeccee--cceEE-EeeCCCeEEEecCC--CC-CCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          164 HSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPK--MK-EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~-~~~~d~~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      +......++|+  ++.++ +.+.++.|.+||+.  ++ ...    ....+..+......+..+++.+++  .+.++...+
T Consensus       177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~----~~~~~~~~~~~~~~p~gi~~d~~G--~lwva~~~~  250 (326)
T 2ghs_A          177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG----KAEVFIDSTGIKGGMDGSVCDAEG--HIWNARWGE  250 (326)
T ss_dssp             EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS----CCEEEEECTTSSSEEEEEEECTTS--CEEEEEETT
T ss_pred             CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc----CceEEEECCCCCCCCCeeEECCCC--CEEEEEeCC
Confidence            12234566675  55554 44557899999986  33 210    111222222223446778888888  455555566


Q ss_pred             CeEEEEeccCCCceeeeeccccccCCCeEEEEEc-cCCCEEEEec
Q 022590          238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGSTILSCC  281 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~  281 (294)
                      +.|..||. +++.  ...+.  .....+++++|+ |+++.|+.++
T Consensus       251 ~~v~~~d~-~g~~--~~~i~--~~~~~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          251 GAVDRYDT-DGNH--IARYE--VPGKQTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             TEEEEECT-TCCE--EEEEE--CSCSBEEEEEEESTTSCEEEEEE
T ss_pred             CEEEEECC-CCCE--EEEEE--CCCCCcEEEEEecCCCCEEEEEe
Confidence            88999998 3432  22332  223468999998 8887665443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.51  E-value=4.5e-12  Score=108.05  Aligned_cols=234  Identities=11%  Similarity=0.044  Sum_probs=135.9

Q ss_pred             cCCCceEEEEeecCCe---EEEEE--cC---Ccccccee------cccCcceEEEEeCCCCCceEEEeeCC-----CcEE
Q 022590           19 NVDGIPFLVAGGINGI---IRVID--VS---NEKLHKSF------VGHGDSINEIRTQPLKPSLVVSASKD-----ESVR   79 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg~---i~iw~--~~---~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~   79 (294)
                      .|+|+ +++....++.   -.+|-  ..   .++....+      .+|...+..++||| ++++|+.+..+     .+|+
T Consensus       115 ~pdG~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SP-DG~~la~~~~~~G~e~~~i~  192 (741)
T 1yr2_A          115 QRRGA-SVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASD-DGRLLAYSVQDGGSDWRTVK  192 (741)
T ss_dssp             EEETT-EEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECT-TSSEEEEEEEETTCSEEEEE
T ss_pred             EEECC-EEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECC-CCCEEEEEEcCCCCceEEEE
Confidence            37898 6665554432   44454  33   33322211      23444788999999 88888776543     4699


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc--------------EEEEeccccccccccceeecCC
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT--------------VKIWSMKEFWTYVEKSFTWTDL  145 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~--------------i~~wd~~~~~~~~~~~~~~~~~  145 (294)
                      +||+.+++.+....    +...+..++|+| + ..|+.++.++.              |++|++.+....          
T Consensus       193 v~dl~tg~~~~~~~----~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~----------  256 (741)
T 1yr2_A          193 FVGVADGKPLADEL----KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA----------  256 (741)
T ss_dssp             EEETTTCCEEEEEE----EEEESCCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG----------
T ss_pred             EEECCCCCCCCccC----CCceeccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh----------
Confidence            99999998765422    222346789999 6 76777766554              888888653210          


Q ss_pred             CCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCee
Q 022590          146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW  218 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~  218 (294)
                               ...+.....+...+..+.|+  |++|+..+.+     ..|.+||+.++..       .....+..+.....
T Consensus       257 ---------~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~-------~~~~~l~~~~~~~~  320 (741)
T 1yr2_A          257 ---------DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKI-------GPVTALIPDLKAQW  320 (741)
T ss_dssp             ---------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEE-------CCCEEEECSSSSCE
T ss_pred             ---------CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCC-------cccEEecCCCCceE
Confidence                     00111222233346677776  7777776654     3899999876411       00223333333344


Q ss_pred             EEEEcccCCcceEEEEcC----CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          219 FIKFSCDFHYNAAAIGNR----EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       219 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .. ++|+++  .|+..+.    ++.|.+||+.+........+.  .+...+..++++ ++.++++...|+..+||.+.
T Consensus       321 ~~-~~~dg~--~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~--~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          321 DF-VDGVGD--QLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP--ESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             EE-EEEETT--EEEEEECTTCTTCEEEEEECSSSSCEEEEEEC--CCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             EE-EeccCC--EEEEEECCCCCCCEEEEEeCCCCccccEEEec--CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            44 347774  4555443    456999998774201122222  333457778887 56778888899987777543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.50  E-value=1.6e-11  Score=94.81  Aligned_cols=240  Identities=12%  Similarity=-0.030  Sum_probs=149.0

Q ss_pred             eecCCCceEEEEeec-----CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee----------CCCcEEEE
Q 022590           17 ACNVDGIPFLVAGGI-----NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS----------KDESVRLW   81 (294)
Q Consensus        17 ~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~dg~i~vw   81 (294)
                      .+.|+++ .+++...     ++.|.+.|..+++.+.++..-..+ . ++++| +++.++.+.          .++.|.+|
T Consensus        39 ~~~pd~~-~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~sp-DG~~lyVan~~~~r~~~G~~~~~Vsvi  114 (386)
T 3sjl_D           39 APAPDAR-RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVAD-DGSFIAHASTVFSRIARGERTDYVEVF  114 (386)
T ss_dssp             CCCCCTT-EEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccCCCCC-EEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECC-CCCEEEEEcccccccccCCCCCEEEEE
Confidence            3458998 5555544     689999999999999988765555 4 99999 777776664          36789999


Q ss_pred             EcCCCceEEEeeccCC----CCCceeEEEEecCCCceEEeeec--CCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           82 NVQTGICILIFAGAGG----HRNEVLSVDFHPSDIYRIASCGM--DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      |..+++.+..+....+    .......+.|+| ++++++++..  ++.|.++|+.+.+.                     
T Consensus       115 D~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~v---------------------  172 (386)
T 3sjl_D          115 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAF---------------------  172 (386)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEE---------------------
T ss_pred             ECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcE---------------------
Confidence            9999999888764211    123567899999 7777777653  68999999998432                     


Q ss_pred             eceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCee-EEEEc-ccCCcceEE
Q 022590          156 FPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW-FIKFS-CDFHYNAAA  232 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~l~  232 (294)
                        +..+... + ...+... ...+++.+.||.+.+.++........    .....+.....++. ...|. +++  .+++
T Consensus       173 --v~tI~v~-g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~----~~~~~~~~~~~~~~~~~~~~~~dG--~~~~  242 (386)
T 3sjl_D          173 --KRMLDVP-D-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI----THTEVFHPEDEFLINHPAYSQKAG--RLVW  242 (386)
T ss_dssp             --EEEEECC-S-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEE----EECCCCSCTTSCBCSCCEEETTTT--EEEE
T ss_pred             --EEEEECC-C-cceeecCCCceeEEECCCCCEEEEECCCCCeEEE----eecceeccccccccccceeEcCCC--cEEE
Confidence              2222111 1 0111111 45677888899999999876321100    00000111111121 13453 555  3334


Q ss_pred             EEcCCCeEEEEeccCCCceeeeecc--------ccccCCCeEEEEEccCCCEEEEecc----------CCcEEEEecCC
Q 022590          233 IGNREGKIFVWELQSSPPVLIARLS--------HAQSKSPIRQTAMSYDGSTILSCCE----------DGAIWRWDAIP  293 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~~~~~~~~--------~~~~~~~v~~~~~s~~~~~l~s~~~----------dg~i~vw~~~~  293 (294)
                       .+.+|.|++.|+.+........+.        ..........++++|+++.|+....          .+.|.+.|+++
T Consensus       243 -vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t  320 (386)
T 3sjl_D          243 -PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT  320 (386)
T ss_dssp             -EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             -EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence             555899999999876533332221        0111233455788999998887643          24688888764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.50  E-value=2.4e-10  Score=89.12  Aligned_cols=237  Identities=9%  Similarity=-0.101  Sum_probs=143.9

Q ss_pred             ecCCCceEEEEeec--CC---eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee----------CCCcEEEEE
Q 022590           18 CNVDGIPFLVAGGI--NG---IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS----------KDESVRLWN   82 (294)
Q Consensus        18 ~~~~~~~~l~~~~~--dg---~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~dg~i~vwd   82 (294)
                      +.|+++ ++++...  .+   .|.++|..+++.+.++.....+  .++++| +++.++.+.          .++.|.+||
T Consensus        28 ~~~~~~-~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~sp-Dg~~lyv~n~~~~~~~rg~~~~~v~viD  103 (373)
T 2mad_H           28 PGADGR-RSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAH-SGSEFALASTSFSRIAKGKRTDYVEVFD  103 (373)
T ss_pred             CCCCCC-EEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECC-CCCEEEEEeccccccccCCCCCeEEEEE
Confidence            347776 5655543  33   8899999999988887754444  999999 888777775          367899999


Q ss_pred             cCCCceEEEeecc-CC---CCCceeEEEEecCCCceEEeeec--CCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           83 VQTGICILIFAGA-GG---HRNEVLSVDFHPSDIYRIASCGM--DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        83 ~~~~~~~~~~~~~-~~---~~~~v~~l~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      ..+.+.+..+... ..   +......+.|+| ++++|+++..  ++.|.++| .+.+.                      
T Consensus       104 ~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~----------------------  159 (373)
T 2mad_H          104 PVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSS----------------------  159 (373)
T ss_pred             CCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCE----------------------
Confidence            9998888776531 00   013356899999 8887887764  57899999 77321                      


Q ss_pred             ceEE-eecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeee--eeecCCCC-eeEEEEcccCCcceEE
Q 022590          157 PVFI-ASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ--KYPVPECD-IWFIKFSCDFHYNAAA  232 (294)
Q Consensus       157 ~~~~-~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~-i~~~~~~~~~~~~~l~  232 (294)
                       ... +. ....+....+....+++.+.||.+.++|. +++...      ...  .......+ .....+.+++. .+++
T Consensus       160 -~~~~i~-~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~------~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~  229 (373)
T 2mad_H          160 -DDQLLS-SPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG------AGLVGAMLTAAQNLLTQPAQANKSG-RIVW  229 (373)
T ss_pred             -EeEEcC-CCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE------EEeccccccCCcceeecceeEecCC-EEEE
Confidence             111 11 11111111122456677778999999999 654210      000  00011111 12245566654 2333


Q ss_pred             EEcCCCeEEEEeccCCCceeeeecccc--------ccCCCeEEEEEccCCCEEEEecc----------CCcEEEEecCC
Q 022590          233 IGNREGKIFVWELQSSPPVLIARLSHA--------QSKSPIRQTAMSYDGSTILSCCE----------DGAIWRWDAIP  293 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~s~~~----------dg~i~vw~~~~  293 (294)
                      . +..+.+.+.|+..........+...        ........++++|+++.|..+..          ++.|.+.|+++
T Consensus       230 ~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t  307 (373)
T 2mad_H          230 P-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV  307 (373)
T ss_pred             E-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC
Confidence            3 3678999999976543332222110        01123445789999988877643          35799988864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.49  E-value=1.1e-11  Score=95.91  Aligned_cols=230  Identities=8%  Similarity=-0.030  Sum_probs=140.0

Q ss_pred             ceeEEEEEeecCCCceEEEEee--cCCeEEEEEcCCcccccee-------cccCcceEEEEeCCCCCceEEEeeC-----
Q 022590            9 ESFYTVSWACNVDGIPFLVAGG--INGIIRVIDVSNEKLHKSF-------VGHGDSINEIRTQPLKPSLVVSASK-----   74 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~l~s~~~-----   74 (294)
                      .....++++  |+|+ ++++..  .++.++||.+.+++.. .+       ..|-..+..+++++ +++++++-..     
T Consensus        17 ~~p~~va~~--~~g~-~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~   91 (343)
T 2qe8_A           17 LAPGNITLT--PDGR-LFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKS   91 (343)
T ss_dssp             SCEEEEEEC--TTSC-EEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTS
T ss_pred             CCcceEEEC--CCCC-EEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCC
Confidence            466778876  8998 777753  2343566665555432 22       23456899999999 7776665433     


Q ss_pred             CCcEEEEEcCCCceEEEeecc---CCCCCceeEEEEecCCCceEEeee---cCCcEEEEeccccccccccceeecCCCCC
Q 022590           75 DESVRLWNVQTGICILIFAGA---GGHRNEVLSVDFHPSDIYRIASCG---MDNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        75 dg~i~vwd~~~~~~~~~~~~~---~~~~~~v~~l~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                      ++.|.+||+.+++.+..+...   ..+...+..++++|.++..+++-.   .++.|.+||+.+..               
T Consensus        92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~---------------  156 (343)
T 2qe8_A           92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL---------------  156 (343)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC---------------
T ss_pred             CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC---------------
Confidence            578999999999877766531   122345789999984556566655   67899999998632               


Q ss_pred             CCCceeeeceEEeecCCCce---eecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEccc
Q 022590          149 FPTKYVQFPVFIASVHSNYV---DCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  225 (294)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  225 (294)
                              .......|....   ..+..++..+.+...++.++.|..                       .+..++++|+
T Consensus       157 --------~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~-----------------------~~~gia~s~d  205 (343)
T 2qe8_A          157 --------AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL-----------------------GVNGIVLDAE  205 (343)
T ss_dssp             --------EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC-----------------------CEEEEEECTT
T ss_pred             --------EEEEecCCCcccccccceeECCEEEEeccCCCceeceec-----------------------ccceeEeccC
Confidence                    111122221110   112223555555566666654431                       2567999999


Q ss_pred             CCcceEEEEcCCC-eEEEEeccC---CCc---eeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          226 FHYNAAAIGNREG-KIFVWELQS---SPP---VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       226 ~~~~~l~~~~~dg-~i~i~d~~~---~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      +  ..|+.+...+ .+..++...   ...   .....+...++......++++++|.++++...++.|.+||.
T Consensus       206 g--~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          206 N--EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             S--CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred             C--CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence            8  4666665554 555555421   110   00000011122345677999999999999999999999997

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.46  E-value=2.6e-10  Score=88.88  Aligned_cols=228  Identities=13%  Similarity=0.086  Sum_probs=140.3

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCc----cccceec------c-cCcceEEEEeCCCCCceEEEeeCC------CcEEEEE
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNE----KLHKSFV------G-HGDSINEIRTQPLKPSLVVSASKD------ESVRLWN   82 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~------~-h~~~v~~~~~~~~~~~~l~s~~~d------g~i~vwd   82 (294)
                      ++++.+++.+..++.|.++|+.+.    +..+++.      . -...-..+...| ++ +++++..+      |.|.+.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence            678867777888899999998755    4445442      1 112456678889 77 77776655      7899999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-------------------cCCcEEEEeccccccccccceeec
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-------------------MDNTVKIWSMKEFWTYVEKSFTWT  143 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-------------------~dg~i~~wd~~~~~~~~~~~~~~~  143 (294)
                      ..+.+.+..+....+...--+.+.|+| +.+.+++..                   .+.+|.+||+.+.+.         
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~---------  240 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR---------  240 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE---------
T ss_pred             CCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE---------
Confidence            999999988874222223356788999 777777774                   368999999987321         


Q ss_pred             CCCCCCCCceeeeceEEeecC--CCceeecce--e--cceEEEee------CCCeEEEecCCCCCCCCCCCCceeeeee-
Q 022590          144 DLPSKFPTKYVQFPVFIASVH--SNYVDCNRW--L--GDFILSKS------VDNEIVLWEPKMKEQSPGEGTADILQKY-  210 (294)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~--~--~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~~~~~~-  210 (294)
                                    ...+..-  ......+.|  +  ++++++++      .+++|.+|....+.       ....+.+ 
T Consensus       241 --------------~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-------~~~~~vId  299 (462)
T 2ece_A          241 --------------IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-------WNAEKVIE  299 (462)
T ss_dssp             --------------EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-------EEEEEEEE
T ss_pred             --------------eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-------eeEEEEEe
Confidence                          1111110  011122222  3  56655555      45677776654321       1111111 


Q ss_pred             -ec----------------CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC-Cceeeeecccccc-----------
Q 022590          211 -PV----------------PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-PPVLIARLSHAQS-----------  261 (294)
Q Consensus       211 -~~----------------~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~-----------  261 (294)
                       ..                .......+.++++++ .+.++.-..+.|.+||+... +......+...+.           
T Consensus       300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr-fLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~  378 (462)
T 2ece_A          300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK-FLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHK  378 (462)
T ss_dssp             ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC-EEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCC
T ss_pred             CCCccccccccccccccccCCCceeEEEECCCCC-EEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccccc
Confidence             00                023467799999996 23344455789999998633 3334444332111           


Q ss_pred             -CCCeEEEEEccCCCEEEEec
Q 022590          262 -KSPIRQTAMSYDGSTILSCC  281 (294)
Q Consensus       262 -~~~v~~~~~s~~~~~l~s~~  281 (294)
                       .+.-..++++|||++|+++.
T Consensus       379 ~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          379 LTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCCCEEEEcCCCCEEEEEc
Confidence             01357899999999999988

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.45  E-value=7.6e-11  Score=91.11  Aligned_cols=240  Identities=8%  Similarity=-0.112  Sum_probs=140.6

Q ss_pred             EEEEeecCC----eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee----------CCCcEEEEEcCCCceEE
Q 022590           25 FLVAGGING----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS----------KDESVRLWNVQTGICIL   90 (294)
Q Consensus        25 ~l~~~~~dg----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~   90 (294)
                      ..++...++    .|.++|..+++.+.++..-..+  .+.++| ++++++.+.          .+++|.+||+.+++.+.
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~  110 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA  110 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE
Confidence            455555455    8899999999999999766666  799999 777777765          47899999999999999


Q ss_pred             EeeccCCC----CCceeEEEEecCCCceEEeeec--CCcEEE--EeccccccccccceeecCCCCCCCCceeee------
Q 022590           91 IFAGAGGH----RNEVLSVDFHPSDIYRIASCGM--DNTVKI--WSMKEFWTYVEKSFTWTDLPSKFPTKYVQF------  156 (294)
Q Consensus        91 ~~~~~~~~----~~~v~~l~~~~~~~~~l~~~~~--dg~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  156 (294)
                      .+....+.    ......+.++| ++++++++..  +..+.+  +|+.+. .    .+.....   ........      
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~tv-~----~i~v~~~---~~~~p~g~~~~~~~  181 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASDD-Q----LTKSASC---FHIHPGAAATHYLG  181 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEEE-E----EEECSSC---CCCEEEETTEEECC
T ss_pred             EEECCCccccccCCCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhhc-e----EEECCCc---eEEccCCCeEEEEE
Confidence            88642000    13467899999 7777777764  457888  888761 1    1100000   00000000      


Q ss_pred             ------ceEEee------------------cCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec
Q 022590          157 ------PVFIAS------------------VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV  212 (294)
Q Consensus       157 ------~~~~~~------------------~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  212 (294)
                            ......                  ....+. . ...+..++..+. +.+.+.|+.....       ..+..+..
T Consensus       182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~vs~-~~V~viD~~~~~~-------~v~~~~~~  251 (368)
T 1mda_H          182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVWAVA-SSILQGDIPAAGA-------TMKAAIDG  251 (368)
T ss_dssp             CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEEECBS-SCCEEEECCSSCC-------EEECCCCS
T ss_pred             cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEEEEcC-CEEEEEECCCCcc-------eEEEEEEe
Confidence                  000000                  000111 1 112333444444 7788888754321       01111111


Q ss_pred             C----------CCCeeEEEEcccCCcceEEEE-c---C-----CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590          213 P----------ECDIWFIKFSCDFHYNAAAIG-N---R-----EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD  273 (294)
Q Consensus       213 ~----------~~~i~~~~~~~~~~~~~l~~~-~---~-----dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (294)
                      .          ......+.++|+++  .++++ .   .     ++.+.++|+.+.+.+  .++...   .....++|+||
T Consensus       252 ~~~~~~~~~~~p~g~~~v~~s~dg~--~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv--~~i~vg---~~p~gi~~s~D  324 (368)
T 1mda_H          252 NESGRKADNFRSAGFQMVAKLKNTD--GIMILTVEHSRSCLAAAENTSSVTASVGQTS--GPISNG---HDSDAIIAAQD  324 (368)
T ss_dssp             SCTHHHHTTEEECSSSCEEEETTTT--EEEEEEEECSSCTTSCEEEEEEEESSSCCEE--ECCEEE---EEECEEEECCS
T ss_pred             ccccccccccccCcceeeEEcCCCC--EEEEEeccccCcccccCCCEEEEECCCCeEE--EEEECC---CCcceEEECCC
Confidence            0          01112267999986  34432 2   2     235669999998743  333321   24788999999


Q ss_pred             CCE-EEEec-cCCcEEEEecCC
Q 022590          274 GST-ILSCC-EDGAIWRWDAIP  293 (294)
Q Consensus       274 ~~~-l~s~~-~dg~i~vw~~~~  293 (294)
                      |++ +++.. .++.|.++|+++
T Consensus       325 g~~l~va~~~~~~~VsVID~~t  346 (368)
T 1mda_H          325 GASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEESSS
T ss_pred             CCEEEEEccCCCCeEEEEECCC
Confidence            984 55555 589999999875

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.44  E-value=1.3e-10  Score=88.69  Aligned_cols=201  Identities=10%  Similarity=0.022  Sum_probs=126.5

Q ss_pred             CceeEEEEEeecCC-CceEEEEeecCCeEEEEEcCCccccce-ecc----cCcceEEEEeCCCCCceEEEeeCC------
Q 022590            8 EESFYTVSWACNVD-GIPFLVAGGINGIIRVIDVSNEKLHKS-FVG----HGDSINEIRTQPLKPSLVVSASKD------   75 (294)
Q Consensus         8 ~~~v~~~~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~-~~~----h~~~v~~~~~~~~~~~~l~s~~~d------   75 (294)
                      ...+.++++.  ++ |+ ++++. ..+.|.+||.+ ++.... ...    ....+.++++.+ +++++++...+      
T Consensus        70 ~~~~~~i~~~--~~~g~-l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~  143 (314)
T 1pjx_A           70 GGIPAGCQCD--RDANQ-LFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPAD  143 (314)
T ss_dssp             ECCEEEEEEC--SSSSE-EEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSC
T ss_pred             CCCCceEEEe--cCCCc-EEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCccccccc
Confidence            3557777776  88 75 44444 44579999987 654332 211    224588999999 77777776654      


Q ss_pred             ---------CcEEEEEcCCCceEEEeeccCCCCCceeEEEEe----cCCCce-EEeeecCCcEEEEeccc-cccccccce
Q 022590           76 ---------ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH----PSDIYR-IASCGMDNTVKIWSMKE-FWTYVEKSF  140 (294)
Q Consensus        76 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~----~~~~~~-l~~~~~dg~i~~wd~~~-~~~~~~~~~  140 (294)
                               +.|..++.. ++......    +......++|+    | ++.. +++...++.|.+||+.. .....    
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~----~~~~~~~i~~~~~~d~-dg~~l~v~~~~~~~i~~~~~~~~g~~~~----  213 (314)
T 1pjx_A          144 YTRSMQEKFGSIYCFTTD-GQMIQVDT----AFQFPNGIAVRHMNDG-RPYQLIVAETPTKKLWSYDIKGPAKIEN----  213 (314)
T ss_dssp             CCBTTSSSCEEEEEECTT-SCEEEEEE----EESSEEEEEEEECTTS-CEEEEEEEETTTTEEEEEEEEETTEEEE----
T ss_pred             ccccccCCCCeEEEECCC-CCEEEecc----CCCCcceEEEecccCC-CCCEEEEEECCCCeEEEEECCCCCcccc----
Confidence                     567777765 55433332    33456889999    8 6654 45556678999999762 11000    


Q ss_pred             eecCCCCCCCCceeeeceEEeecCC-Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCe
Q 022590          141 TWTDLPSKFPTKYVQFPVFIASVHS-NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDI  217 (294)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i  217 (294)
                                    ......+..+. .....++++  ++++++...++.|.+||..+++         .+..+..+...+
T Consensus       214 --------------~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~---------~~~~~~~~~~~~  270 (314)
T 1pjx_A          214 --------------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---------PKMRIRCPFEKP  270 (314)
T ss_dssp             --------------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS---------CSEEEECSSSCE
T ss_pred             --------------ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCc---------EeEEEeCCCCCc
Confidence                          00111222222 445666665  6677776778999999987554         233344455678


Q ss_pred             eEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590          218 WFIKFSCDFHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       218 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                      .++++++++. .++++...++.|..|++...
T Consensus       271 ~~i~~~~dg~-~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          271 SNLHFKPQTK-TIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             EEEEECTTSS-EEEEEETTTTEEEEEECSSC
T ss_pred             eeEEECCCCC-EEEEEeCCCCeEEEEeCCCC
Confidence            8999999883 24555566789999998753

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.42  E-value=7e-10  Score=87.69  Aligned_cols=203  Identities=10%  Similarity=0.054  Sum_probs=128.4

Q ss_pred             cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC--cEEEEeccc
Q 022590           54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKE  131 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg--~i~~wd~~~  131 (294)
                      .....|+|++ +++++++...++.|++||..++.......    ...... ++|+| ++..|+++..++  .|.+++...
T Consensus       131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~----~~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~  203 (409)
T 3hrp_A          131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHP----GFKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKAS  203 (409)
T ss_dssp             CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEE----TCCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGG
T ss_pred             CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeec----cCCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCC
Confidence            3578999999 78888887778999999998777665544    223334 99999 777777777665  688888765


Q ss_pred             cccccccceeecCCCCCCCCceeeeceEEeec-CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeee
Q 022590          132 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ  208 (294)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  208 (294)
                      ....                    ........ ....+.+++++  +..|+.+..++.|+.||...+..       ..+.
T Consensus       204 ~~~~--------------------~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-------~~~~  256 (409)
T 3hrp_A          204 GWAP--------------------TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-------TLIK  256 (409)
T ss_dssp             TTCE--------------------EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-------EEEE
T ss_pred             Ccee--------------------EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-------EEEe
Confidence            2110                    00001111 33455667775  34555567788999999876531       1111


Q ss_pred             e--eecCCCC-ee-EEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc-cc---------ccCCCeEEEEEccCC
Q 022590          209 K--YPVPECD-IW-FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HA---------QSKSPIRQTAMSYDG  274 (294)
Q Consensus       209 ~--~~~~~~~-i~-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~---------~~~~~v~~~~~s~~~  274 (294)
                      .  ....... .. .++|+|++. .++++-...+.|+.|+..... ....-.. ..         ..-.....++++|+|
T Consensus       257 ~~~~~g~~~~~P~~~ia~~p~~g-~lyv~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          257 QLELSGSLGTNPGPYLIYYFVDS-NFYMSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             ECCCCSCCCCSSCCEEEEETTTT-EEEEEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             cccccCCCCCCccccEEEeCCCC-EEEEEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence            0  1111111 12 899999643 566677778999999976541 1111000 00         012347899999999


Q ss_pred             CEEEEec-cCCcEEEEecC
Q 022590          275 STILSCC-EDGAIWRWDAI  292 (294)
Q Consensus       275 ~~l~s~~-~dg~i~vw~~~  292 (294)
                      +++++-. .++.|+.|++.
T Consensus       335 ~lyvad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             CEEEEETTTTCEEEEEETT
T ss_pred             CEEEEeCCCCCEEEEEECC
Confidence            9888887 88999999853

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.41  E-value=3.2e-13  Score=105.37  Aligned_cols=205  Identities=10%  Similarity=0.010  Sum_probs=113.6

Q ss_pred             CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCC
Q 022590           21 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRN  100 (294)
Q Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~  100 (294)
                      ++. .+++++.||.|+.||..+|+.+..+..  +.+.+..+.. ++..+++++.||.|..||..+|+.+..+..   +..
T Consensus         8 ~~~-~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~---~~~   80 (369)
T 2hz6_A            8 PET-LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPF---TIP   80 (369)
T ss_dssp             CTT-EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSC---CHH
T ss_pred             eCC-EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeec---cCc
Confidence            455 799999999999999999999888775  5565555666 667888888999999999999987766541   211


Q ss_pred             -cee-EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceE
Q 022590          101 -EVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFI  178 (294)
Q Consensus       101 -~v~-~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l  178 (294)
                       .+. +..+.  .+..+++++.|+.++.||.++++.....                       ..+.. + ..+..++.+
T Consensus        81 ~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----------------------~~~~~-~-~~~p~~~~v  133 (369)
T 2hz6_A           81 ELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGEKQQTL-----------------------SSAFA-D-SLSPSTSLL  133 (369)
T ss_dssp             HHHTTCSCC-------CCCCEEEEEEEEECCC-----------------------------------------------E
T ss_pred             cccccCceEe--cCCEEEEEeCCCEEEEEECCCCcEEEEe-----------------------cCCCc-c-cccccCCEE
Confidence             110 01111  2346788889999999999985432211                       11100 0 011147788


Q ss_pred             EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccC-CcceEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590          179 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF-HYNAAAIGNREGKIFVWELQSSPPVLIARLS  257 (294)
Q Consensus       179 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  257 (294)
                      ++++.++.|+.||.++++....     ..  ...    .....+..+. ....+++++.+|.++.||.++++......+.
T Consensus       134 ~~~~~dg~v~a~d~~tG~~~W~-----~~--~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  202 (369)
T 2hz6_A          134 YLGRTEYTITMYDTKTRELRWN-----AT--YFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA  202 (369)
T ss_dssp             EEEEEEEEEECCCSSSSSCCCE-----EE--EEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred             EEEecCCEEEEEECCCCCEEEe-----Ee--ccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence            8899999999999998864221     10  000    0111222221 0025777888999999999998755444322


Q ss_pred             ccccCCCeE-EEEEccCCC
Q 022590          258 HAQSKSPIR-QTAMSYDGS  275 (294)
Q Consensus       258 ~~~~~~~v~-~~~~s~~~~  275 (294)
                           .++. ...++++|.
T Consensus       203 -----~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          203 -----SPVVAFYVWQREGL  216 (369)
T ss_dssp             -----SCEEEEEECTTSSC
T ss_pred             -----CceEEEEEecCCce
Confidence                 3443 344555654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=4.8e-10  Score=84.89  Aligned_cols=182  Identities=9%  Similarity=0.053  Sum_probs=116.1

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc----cCcceEEEEeCCCCCceEEEeeCC--------
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASKD--------   75 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~s~~~d--------   75 (294)
                      ...+.++++.  ++|+ ++++.  ++.|.+||.++++.......    ....++.++++| +++++++...+        
T Consensus        53 ~~~~~~i~~~--~dG~-l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~  126 (297)
T 3g4e_A           53 DAPVSSVALR--QSGG-YVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLE  126 (297)
T ss_dssp             SSCEEEEEEB--TTSS-EEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCC
T ss_pred             CCceEEEEEC--CCCC-EEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCccccccccc
Confidence            4567788876  9998 55543  56899999987764332221    224588999999 77766654322        


Q ss_pred             -CcEEEEEcCC-CceEEEeeccCCCCCceeEEEEecCCCc-eEEeeecCCcEEEEecc--ccccccccceeecCCCCCCC
Q 022590           76 -ESVRLWNVQT-GICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMK--EFWTYVEKSFTWTDLPSKFP  150 (294)
Q Consensus        76 -g~i~vwd~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~  150 (294)
                       ..-.+|.+.. ++......    .....+.++|+| +++ ++++.+.++.|.+|++.  ++...               
T Consensus       127 ~~~~~l~~~d~~g~~~~~~~----~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~---------------  186 (297)
T 3g4e_A          127 RHQGALYSLFPDHHVKKYFD----QVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQIS---------------  186 (297)
T ss_dssp             TTCEEEEEECTTSCEEEEEE----EESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEE---------------
T ss_pred             CCCcEEEEEECCCCEEEEee----ccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCccc---------------
Confidence             3345666543 33333222    344578999999 665 45666678899999974  21100               


Q ss_pred             CceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc-ccCC
Q 022590          151 TKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFH  227 (294)
Q Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  227 (294)
                         .......+..+......++++  |++.++....+.|..||..+++         .+..+..+...+++++|. |+++
T Consensus       187 ---~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~---------~~~~i~~p~~~~t~~~f~g~d~~  254 (297)
T 3g4e_A          187 ---NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK---------RLQTVKLPVDKTTSCCFGGKNYS  254 (297)
T ss_dssp             ---EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCC---------EEEEEECSSSBEEEEEEESGGGC
T ss_pred             ---CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCce---------EEEEEECCCCCceEEEEeCCCCC
Confidence               011122222233455667775  7777776778899999998665         566677776789999998 7875

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.37  E-value=8.5e-13  Score=102.97  Aligned_cols=179  Identities=12%  Similarity=0.029  Sum_probs=99.5

Q ss_pred             CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecC
Q 022590           65 KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD  144 (294)
Q Consensus        65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~  144 (294)
                      ++..+++++.||.|..||..+|+.+..+..     +.+.+..+.. ++..+++++.||.|+.||..+++....       
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-----~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~-------   74 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-----DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTK-------   74 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-----CCSCCCC------CCEEECTTTCCEEEC-----CCSEE-------
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-----CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeee-------
Confidence            456889999999999999999999988872     4455555555 666788888999999999977432111       


Q ss_pred             CCCCCCCceeeeceEEeecCC-Cce-eecce-ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEE
Q 022590          145 LPSKFPTKYVQFPVFIASVHS-NYV-DCNRW-LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIK  221 (294)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~-~~i-~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  221 (294)
                                      ...+. ..+ ..... .++.+++++.++.++.||.++++...         .+..+.    ...
T Consensus        75 ----------------~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w---------~~~~~~----~~~  125 (369)
T 2hz6_A           75 ----------------LPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQ---------TLSSAF----ADS  125 (369)
T ss_dssp             ----------------CSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC----------------------------
T ss_pred             ----------------eeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEE---------EecCCC----ccc
Confidence                            11110 000 01111 35678888899999999999887422         222111    123


Q ss_pred             EcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCC---CEEEEeccCCcEEEEecCC
Q 022590          222 FSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG---STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       222 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++|++  ..+++++.++.|+.||.++++........  .    ....+++++.   ..+++++.||.|+.||.++
T Consensus       126 ~~p~~--~~v~~~~~dg~v~a~d~~tG~~~W~~~~~--~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t  192 (369)
T 2hz6_A          126 LSPST--SLLYLGRTEYTITMYDTKTRELRWNATYF--D----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSES  192 (369)
T ss_dssp             ---------EEEEEEEEEEECCCSSSSSCCCEEEEE--E----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred             ccccC--CEEEEEecCCEEEEEECCCCCEEEeEecc--c----ccCccccCCccccceEEEECCCCEEEEEECCC
Confidence            45554  57888899999999999998755444322  1    1222333332   4577788899999999764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.34  E-value=2.3e-09  Score=78.54  Aligned_cols=208  Identities=10%  Similarity=-0.032  Sum_probs=133.7

Q ss_pred             cccceecccCc--ceEEEEeCCCCCceEEEeeC--CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee
Q 022590           44 KLHKSFVGHGD--SINEIRTQPLKPSLVVSASK--DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG  119 (294)
Q Consensus        44 ~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~  119 (294)
                      +.+.++. |..  ....+.|++ ++.++++.+.  ++.|+++|+.+++.+..+..  +.......+++.  ++.+.++.-
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l--~~~~fgeGi~~~--g~~lyv~t~   83 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKM--DDSYFGEGLTLL--NEKLYQVVW   83 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEEC--CTTCCEEEEEEE--TTEEEEEET
T ss_pred             eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEec--CCCcceEEEEEe--CCEEEEEEe
Confidence            3445554 443  357899998 6666665553  68999999999999888763  111223356665  456666667


Q ss_pred             cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCC
Q 022590          120 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSP  199 (294)
Q Consensus       120 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  199 (294)
                      .++.+.++|..+.+.                       +..+......-..+++++..++++..++.|.++|..+.+   
T Consensus        84 ~~~~v~viD~~t~~v-----------------------~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~---  137 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSN-----------------------IKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFK---  137 (266)
T ss_dssp             TCSEEEEEETTTTEE-----------------------EEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCC---
T ss_pred             cCCEEEEEECCCCcE-----------------------EEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCc---
Confidence            789999999987422                       222221111123466677777777778999999998765   


Q ss_pred             CCCCceeeeeeecC-----CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccc---------ccCCCe
Q 022590          200 GEGTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA---------QSKSPI  265 (294)
Q Consensus       200 ~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~v  265 (294)
                            ....+...     -..++.+.+. ++  ...+....++.|.+.|..+++......+...         ......
T Consensus       138 ------v~~~I~Vg~~~~p~~~~nele~~-dg--~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~  208 (266)
T 2iwa_A          138 ------LIKKHNVKYNGHRVIRLNELEYI-NG--EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVL  208 (266)
T ss_dssp             ------EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred             ------EEEEEEECCCCcccccceeEEEE-CC--EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCce
Confidence                  33333321     1236677777 55  4555565688999999999985444443210         011356


Q ss_pred             EEEEEccCCCE-EEEeccCCcEEEEecC
Q 022590          266 RQTAMSYDGST-ILSCCEDGAIWRWDAI  292 (294)
Q Consensus       266 ~~~~~s~~~~~-l~s~~~dg~i~vw~~~  292 (294)
                      +.++|+|+++. ++++...+.+.+-++.
T Consensus       209 nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          209 NGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             EEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            89999999865 5566677888887764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.30  E-value=1.7e-10  Score=89.23  Aligned_cols=228  Identities=13%  Similarity=0.058  Sum_probs=137.7

Q ss_pred             cCceeEEEEEeecCCCceEEEEeec-----CCeEEEEEcCCccccceecc------cCcceEEEEeCCCCCceEEEee--
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGI-----NGIIRVIDVSNEKLHKSFVG------HGDSINEIRTQPLKPSLVVSAS--   73 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~l~s~~--   73 (294)
                      |-..+..+++.  ++|+ ++++...     ++.|.+||+.+++.+..+..      +...+..+++++.++..+++-.  
T Consensus        65 ~~~~p~gv~~d--~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~  141 (343)
T 2qe8_A           65 TFDTVLGIKSD--GNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP  141 (343)
T ss_dssp             CCSCEEEEEEC--SSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred             ceeEeeEEEEc--CCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence            45678888886  8887 5555443     57999999998887665543      2235689999984455556655  


Q ss_pred             -CCCcEEEEEcCCCceEEEeeccCCCCCcee-EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC
Q 022590           74 -KDESVRLWNVQTGICILIFAGAGGHRNEVL-SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT  151 (294)
Q Consensus        74 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  151 (294)
                       .++.|.+||+.+++....+.   +|..... ...+.+ ++..+.+.+.++.++.|...                     
T Consensus       142 ~~~~~i~v~d~~~g~~~r~~~---~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~~---------------------  196 (343)
T 2qe8_A          142 DDKAALIRVDLQTGLAARVLQ---GYPGIAPEDIDLVI-DGVPVQIGQPDGTVIRPHLG---------------------  196 (343)
T ss_dssp             GGGCEEEEEETTTCCEEEECT---TCTTTSCCSCCCEE-TTEECBEECTTSCEECCCCC---------------------
T ss_pred             CCCCeEEEEECCCCCEEEEec---CCCcccccccceeE-CCEEEEeccCCCceeceecc---------------------
Confidence             67899999999888766554   3322110 134445 56666666777776555321                     


Q ss_pred             ceeeeceEEeecCCCceeeccee--cceEEEeeCCC-eEEEecCCCCCCCCCCCCce---eeeeeecCCCCeeEEEEccc
Q 022590          152 KYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDN-EIVLWEPKMKEQSPGEGTAD---ILQKYPVPECDIWFIKFSCD  225 (294)
Q Consensus       152 ~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~  225 (294)
                                      +..++++  ++.|+.+..++ .+..++......... ....   .+... .+......++++++
T Consensus       197 ----------------~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-g~~g~pdgia~d~~  258 (343)
T 2qe8_A          197 ----------------VNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL-TDAELGSKIERY-SEKPICDGISIDKD  258 (343)
T ss_dssp             ----------------EEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC-CHHHHHTTCEEE-EECCSCSCEEECTT
T ss_pred             ----------------cceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC-ChhhhhcceEec-ccCCCCceEEECCC
Confidence                            2234444  66676666555 455444321110000 0000   00111 11224556899998


Q ss_pred             CCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCc
Q 022590          226 FHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA  285 (294)
Q Consensus       226 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  285 (294)
                      +  .++++...++.|.+||..+++.......   .......+++|.++++++++.+..+.
T Consensus       259 G--~l~va~~~~~~V~~~d~~~G~~~~~~~~---~~~~~p~~va~~~~g~l~v~~~~~~~  313 (343)
T 2qe8_A          259 H--NIYVGDLAHSAIGVITSADRAYKLLVTD---EKLSWTDSFNFGSDGYLYFDCNQLHH  313 (343)
T ss_dssp             C--CEEEEEGGGTEEEEEETTTTEEEEEEEC---GGGSCEEEEEECTTSCEEEEECCGGG
T ss_pred             C--CEEEEccCCCeEEEEECCCCCEEEEEEC---CceecCCeeEECCCCcEEEEeCcccc
Confidence            7  6888888899999999855532222211   22356899999999998888765443

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.30  E-value=2.8e-09  Score=81.81  Aligned_cols=214  Identities=10%  Similarity=0.011  Sum_probs=138.0

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  104 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  104 (294)
                      .+..++.++.|..+|.. ++.......+...+.++...+ ++. +..++.++.|..+|.. ++....+..   ....+.+
T Consensus       109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~---~~~~~~~  181 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKT---NDAITSA  181 (330)
T ss_dssp             EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEEC---SSCCCSC
T ss_pred             EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEec---CCCceee
Confidence            57788888999999987 776666655555667777766 554 6667778999999998 777766652   4456777


Q ss_pred             EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceec-ceEEEeeC
Q 022590          105 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLG-DFILSKSV  183 (294)
Q Consensus       105 l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~  183 (294)
                      +...+ ++.++ .++  +.+..+| .++.                       ...........+.++..++ ..+..++.
T Consensus       182 ~~~d~-~g~l~-v~t--~~l~~~d-~~g~-----------------------~~~~~~~~~~~~~~~~~~~~g~l~v~t~  233 (330)
T 3hxj_A          182 ASIGK-DGTIY-FGS--DKVYAIN-PDGT-----------------------EKWNFYAGYWTVTRPAISEDGTIYVTSL  233 (330)
T ss_dssp             CEECT-TCCEE-EES--SSEEEEC-TTSC-----------------------EEEEECCSSCCCSCCEECTTSCEEEEET
T ss_pred             eEEcC-CCEEE-EEe--CEEEEEC-CCCc-----------------------EEEEEccCCcceeceEECCCCeEEEEcC
Confidence            77766 66544 444  7889998 4421                       1222222334566666663 37777888


Q ss_pred             CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCC
Q 022590          184 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS  263 (294)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  263 (294)
                      ++.+..+|.. ++         .+..+......+..+.+.+++   .|..++.+|.|..+|. +++.......    ...
T Consensus       234 ~~gl~~~~~~-g~---------~~~~~~~~~~~~~~~~~~~~g---~l~v~t~~ggl~~~d~-~g~~~~~~~~----~~~  295 (330)
T 3hxj_A          234 DGHLYAINPD-GT---------EKWRFKTGKRIESSPVIGNTD---TIYFGSYDGHLYAINP-DGTEKWNFET----GSW  295 (330)
T ss_dssp             TTEEEEECTT-SC---------EEEEEECSSCCCSCCEECTTS---CEEEECTTCEEEEECT-TSCEEEEEEC----SSC
T ss_pred             CCeEEEECCC-CC---------EeEEeeCCCCccccceEcCCC---eEEEecCCCCEEEECC-CCcEEEEEEc----CCc
Confidence            8888888753 22         233333333333344555454   5777888889999996 4543333222    234


Q ss_pred             CeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          264 PIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       264 ~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .+.++...++|+ |..++.+|.+++...+
T Consensus       296 ~~~~~~~d~~g~-l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          296 IIATPVIDENGT-IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             CCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred             cccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence            567778878876 5557889999987764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.29  E-value=9.6e-10  Score=92.42  Aligned_cols=245  Identities=12%  Similarity=0.106  Sum_probs=142.0

Q ss_pred             EEEEeecCCeEEEEEcCCccccceeccc-C----cceEE-EEeCCCCCceEEEeeC------CCcEEEEEcCCCceEEEe
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGH-G----DSINE-IRTQPLKPSLVVSASK------DESVRLWNVQTGICILIF   92 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h-~----~~v~~-~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~   92 (294)
                      .|++++.|+.|..+|..+|+.+..+..+ .    ..+.+ ....  ++ .++.++.      +|.|..+|..+|+.+..+
T Consensus       130 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~--~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF--KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEE--CC-EEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            6888899999999999999988777654 1    11211 1111  33 4444443      799999999999998877


Q ss_pred             eccCCCC-----------------------------CceeEEEEecCCCceEEeeecCC-------------------cE
Q 022590           93 AGAGGHR-----------------------------NEVLSVDFHPSDIYRIASCGMDN-------------------TV  124 (294)
Q Consensus        93 ~~~~~~~-----------------------------~~v~~l~~~~~~~~~l~~~~~dg-------------------~i  124 (294)
                      .......                             .....++++| +..+++.+..++                   .|
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv  285 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI  285 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence            6421110                             0113578888 666677766554                   48


Q ss_pred             EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce-eecceec---ceEEEeeCCCeEEEecCCCCCCCCC
Q 022590          125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV-DCNRWLG---DFILSKSVDNEIVLWEPKMKEQSPG  200 (294)
Q Consensus       125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~  200 (294)
                      ..+|.++++..-........   ...          ......++ .....+|   ..++.++.+|.++++|.++++....
T Consensus       286 ~AlD~~TG~~~W~~~~~~~d---~wd----------~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~  352 (677)
T 1kb0_A          286 VALDPDTGKYKWHYQETPGD---NWD----------YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA  352 (677)
T ss_dssp             EEECTTTCCEEEEEESSTTC---CSC----------CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred             EEEECCCCCEEEEEecCCCc---ccc----------cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecc
Confidence            88888874432211100000   000          00000111 1111124   6889999999999999998874211


Q ss_pred             CCCc--eeeeeeecCC------------------------CCeeEEEEcccCCcceEEEEcC------------------
Q 022590          201 EGTA--DILQKYPVPE------------------------CDIWFIKFSCDFHYNAAAIGNR------------------  236 (294)
Q Consensus       201 ~~~~--~~~~~~~~~~------------------------~~i~~~~~~~~~~~~~l~~~~~------------------  236 (294)
                      ....  .....+....                        ..-..++++|+..  ++++...                  
T Consensus       353 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~--~~yv~~~~~~~~~~~~~~~~~g~~~  430 (677)
T 1kb0_A          353 KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG--LVYLPAQNVPVNLMDDKKWEFNQAG  430 (677)
T ss_dssp             EESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT--EEEEEEEECCCEEEECTTCCTTCCC
T ss_pred             ccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC--EEEEeChhcceeeeccccccccccc
Confidence            0000  0000000000                        0012467777763  5544322                  


Q ss_pred             -------------------------CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          237 -------------------------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       237 -------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                                               .|.|..||+.+++.+......     .++....+..++.+++.++.||.+++||.
T Consensus       431 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          431 PGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-----SPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             TTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-----SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             ccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC-----CCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence                                     278999999998755444332     33445556778889999999999999998


Q ss_pred             CC
Q 022590          292 IP  293 (294)
Q Consensus       292 ~~  293 (294)
                      ++
T Consensus       506 ~t  507 (677)
T 1kb0_A          506 AT  507 (677)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.29  E-value=8.9e-09  Score=80.65  Aligned_cols=225  Identities=8%  Similarity=-0.001  Sum_probs=133.6

Q ss_pred             EEEEeecCCeEEEEEcCCccccceeccc---------CcceE-EEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeec
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGH---------GDSIN-EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAG   94 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h---------~~~v~-~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~   94 (294)
                      .+++++.++.|..+|..+++.+..+...         ...+. ....   .+..++.++.++.|..+|..+++.+.....
T Consensus        55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            6888888999999999999887665532         12232 2333   335677788899999999999998877663


Q ss_pred             cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee
Q 022590           95 AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL  174 (294)
Q Consensus        95 ~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (294)
                         ...........  + ..+++++.++.+..+|..+++........              .+......    .......
T Consensus       132 ---~~~~~~~p~~~--~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~--------------~~~~~~~~----~~~~~~~  187 (376)
T 3q7m_A          132 ---AGEALSRPVVS--D-GLVLIHTSNGQLQALNEADGAVKWTVNLD--------------MPSLSLRG----ESAPTTA  187 (376)
T ss_dssp             ---SSCCCSCCEEE--T-TEEEEECTTSEEEEEETTTCCEEEEEECC--------------C-----CC----CCCCEEE
T ss_pred             ---CCceEcCCEEE--C-CEEEEEcCCCeEEEEECCCCcEEEEEeCC--------------CCceeecC----CCCcEEE
Confidence               21111122222  3 35777888999999999875322111100              00000000    0122223


Q ss_pred             cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC-------CeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          175 GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC-------DIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       175 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      +..++.+..++.+..+|..+++.         +-.......       .+..+...|--....++.++.++.+..+|..+
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~---------~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t  258 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQM---------IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS  258 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCE---------EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred             CCEEEEEcCCCEEEEEECCCCcE---------EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence            66788888899999999987763         222221100       00000011100013677788899999999999


Q ss_pred             CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          248 SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++.......      .....+..  ++..|+.++.+|.|..+|.++
T Consensus       259 G~~~w~~~~------~~~~~~~~--~~~~l~~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          259 GQIMWKREL------GSVNDFIV--DGNRIYLVDQNDRVMALTIDG  296 (376)
T ss_dssp             CCEEEEECC------CCEEEEEE--ETTEEEEEETTCCEEEEETTT
T ss_pred             CcEEeeccC------CCCCCceE--ECCEEEEEcCCCeEEEEECCC
Confidence            875443332      12334443  356777788888899988764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.28  E-value=7.8e-10  Score=93.58  Aligned_cols=202  Identities=8%  Similarity=0.012  Sum_probs=119.3

Q ss_pred             ccCcceEEEEeCCCCCceEEE-----eeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC---
Q 022590           51 GHGDSINEIRTQPLKPSLVVS-----ASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN---  122 (294)
Q Consensus        51 ~h~~~v~~~~~~~~~~~~l~s-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg---  122 (294)
                      +|...+..++||| ++++||-     |+...+|++||+.+++.+....    +......++|+  +++.|+.++.+.   
T Consensus       126 ~~~~~l~~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~----~~~k~~~~~Ws--Dg~~l~y~~~~~~~~  198 (693)
T 3iuj_A          126 DGTTALDQLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLETPL----KDVKFSGISWL--GNEGFFYSSYDKPDG  198 (693)
T ss_dssp             TSCCEEEEEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE----EEEESCCCEEE--TTTEEEEEESSCCC-
T ss_pred             CCcEEEEEEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcccc----CCceeccEEEe--CCCEEEEEEecCccc
Confidence            3556788999999 8887773     3334679999999998654321    11123567898  445566666553   


Q ss_pred             ----------cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec-CCCceeeccee--cceEEEee----CCC
Q 022590          123 ----------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKS----VDN  185 (294)
Q Consensus       123 ----------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~l~~~~----~d~  185 (294)
                                .|++|++.+....                   ...+..... |......+.|+  +++|+...    ...
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~-------------------~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~  259 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQED-------------------DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGN  259 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGG-------------------CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCC
T ss_pred             ccccccCCCcEEEEEECCCCccc-------------------ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCc
Confidence                      3888988763211                   011222222 34445566665  66664433    235


Q ss_pred             eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC---CCeEEEEeccCCCceeeeeccccccC
Q 022590          186 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSSPPVLIARLSHAQSK  262 (294)
Q Consensus       186 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~  262 (294)
                      .|.++|+.++..        ....+..+....... ++++++ .+++....   .+.|..+|+.+.+......+.  .+.
T Consensus       260 ~i~~~d~~~~~~--------~~~~l~~~~~~~~~~-~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~~~  327 (693)
T 3iuj_A          260 RLYVKDLSQENA--------PLLTVQGDLDADVSL-VDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--PER  327 (693)
T ss_dssp             EEEEEETTSTTC--------CCEEEECSSSSCEEE-EEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--CCC
T ss_pred             EEEEEECCCCCC--------ceEEEeCCCCceEEE-EeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEe--cCC
Confidence            899999976532        123333344444443 667765 34444443   368999999886541112222  233


Q ss_pred             CCeEEEEEccCCCEEEEeccC-C--cEEEEecC
Q 022590          263 SPIRQTAMSYDGSTILSCCED-G--AIWRWDAI  292 (294)
Q Consensus       263 ~~v~~~~~s~~~~~l~s~~~d-g--~i~vw~~~  292 (294)
                      ..+.  .|++++++|+....+ |  .|++|++.
T Consensus       328 ~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          328 QQVL--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             SSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             CCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            3344  899999988876554 4  58888875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.28  E-value=1.7e-08  Score=79.12  Aligned_cols=227  Identities=7%  Similarity=0.009  Sum_probs=135.0

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCce--
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV--  102 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v--  102 (294)
                      .+++++.++.|..+|..+++..................   +..++.++.++.|..+|..+++.+..+..    ..++  
T Consensus       105 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~~W~~~~----~~~~~~  177 (376)
T 3q7m_A          105 HVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAVKWTVNL----DMPSLS  177 (376)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEEC----CC----
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcEEEEEeC----CCCcee
Confidence            68888899999999999998876665433222222222   34677788899999999999998887763    2222  


Q ss_pred             ----eEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceE
Q 022590          103 ----LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFI  178 (294)
Q Consensus       103 ----~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l  178 (294)
                          ......  + ..++.+..++.+..+|..++.............         ......+.   .........+..+
T Consensus       178 ~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~---------~~~~~~~~---~~~~~p~~~~~~v  242 (376)
T 3q7m_A          178 LRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG---------STEIDRLS---DVDTTPVVVNGVV  242 (376)
T ss_dssp             -CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------------------CCCCCCEEETTEE
T ss_pred             ecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCC---------Cccccccc---ccCCCcEEECCEE
Confidence                122222  3 357778889999999998754322111100000         00000000   0001111236778


Q ss_pred             EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc
Q 022590          179 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH  258 (294)
Q Consensus       179 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  258 (294)
                      +.++.++.+..+|.++++.         +.....  .....+..  ++  ..++.++.++.+..+|..+++........ 
T Consensus       243 ~~~~~~g~l~~~d~~tG~~---------~w~~~~--~~~~~~~~--~~--~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-  306 (376)
T 3q7m_A          243 FALAYNGNLTALDLRSGQI---------MWKREL--GSVNDFIV--DG--NRIYLVDQNDRVMALTIDGGVTLWTQSDL-  306 (376)
T ss_dssp             EEECTTSCEEEEETTTCCE---------EEEECC--CCEEEEEE--ET--TEEEEEETTCCEEEEETTTCCEEEEECTT-
T ss_pred             EEEecCcEEEEEECCCCcE---------EeeccC--CCCCCceE--EC--CEEEEEcCCCeEEEEECCCCcEEEeeccc-
Confidence            8888899999999987752         222221  22333333  23  46777888999999999998754443311 


Q ss_pred             cccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          259 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       259 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                       . ...+.....  .+..|+.++.+|.|+++|.++
T Consensus       307 -~-~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~t  337 (376)
T 3q7m_A          307 -L-HRLLTSPVL--YNGNLVVGDSEGYLHWINVED  337 (376)
T ss_dssp             -T-TSCCCCCEE--ETTEEEEECTTSEEEEEETTT
T ss_pred             -C-CCcccCCEE--ECCEEEEEeCCCeEEEEECCC
Confidence             1 111222222  246788888999999999764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.28  E-value=4e-09  Score=80.11  Aligned_cols=204  Identities=9%  Similarity=-0.065  Sum_probs=122.8

Q ss_pred             ccceecccCcceEEEEeCCCCCc-eEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc
Q 022590           45 LHKSFVGHGDSINEIRTQPLKPS-LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT  123 (294)
Q Consensus        45 ~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~  123 (294)
                      .+..+...........|+| +++ ++++...++.|..|+. +++. ..+.   .+...+..+++++ +++++++...++.
T Consensus        36 ~~~~l~~~~~~~egp~~~~-~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~---~~~~~~~gl~~d~-dG~l~v~~~~~~~  108 (305)
T 3dr2_A           36 RLLTLYDQATWSEGPAWWE-AQRTLVWSDLVGRRVLGWRE-DGTV-DVLL---DATAFTNGNAVDA-QQRLVHCEHGRRA  108 (305)
T ss_dssp             CCEEEECCCSSEEEEEEEG-GGTEEEEEETTTTEEEEEET-TSCE-EEEE---ESCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred             ceEEEecCCcCccCCeEeC-CCCEEEEEECCCCEEEEEeC-CCCE-EEEe---CCCCccceeeECC-CCCEEEEECCCCE
Confidence            3444544556678899999 655 7788888899999998 4553 3444   2566789999999 7786666556678


Q ss_pred             EEEEeccccccccccceeecCCCCCCCCceeeeceEEeec-CCCceeeccee--cceEEE----eeC-------------
Q 022590          124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILS----KSV-------------  183 (294)
Q Consensus       124 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~l~~----~~~-------------  183 (294)
                      |.+|+... ....                    ....... ....+..+.++  |++.++    |..             
T Consensus       109 v~~~~~~g-~~~~--------------------~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~  167 (305)
T 3dr2_A          109 ITRSDADG-QAHL--------------------LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELA  167 (305)
T ss_dssp             EEEECTTS-CEEE--------------------EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSS
T ss_pred             EEEECCCC-CEEE--------------------EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccC
Confidence            99998753 1000                    0000000 11234455664  666665    332             


Q ss_pred             CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC------CeEEEEeccCCCceeeeecc
Q 022590          184 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE------GKIFVWELQSSPPVLIARLS  257 (294)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~  257 (294)
                      .+.|..||..+++.       ..+   . .......++|+|+++  .|+.+...      +.|++|++..........+.
T Consensus       168 ~~~v~~~d~~~g~~-------~~~---~-~~~~p~gl~~spdg~--~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~  234 (305)
T 3dr2_A          168 HHSVYRLPPDGSPL-------QRM---A-DLDHPNGLAFSPDEQ--TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFA  234 (305)
T ss_dssp             CEEEEEECSSSCCC-------EEE---E-EESSEEEEEECTTSS--EEEEEECCC---CCCEEEEEEEETTEEEEEEEEE
T ss_pred             CCeEEEEcCCCCcE-------EEE---e-cCCCCcceEEcCCCC--EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEE
Confidence            25678888765531       111   1 223467899999984  55555444      78999999765311111111


Q ss_pred             ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          258 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       258 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                       .........++++++|++.++. .+| |.+|+.+
T Consensus       235 -~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~~  266 (305)
T 3dr2_A          235 -SVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDSD  266 (305)
T ss_dssp             -CCSSSCCCSEEECTTSCEEECC-SSE-EEEECTT
T ss_pred             -ECCCCCCCeEEECCCCCEEEec-CCc-EEEECCC
Confidence             1122345678999999855444 554 8888764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.27  E-value=2.2e-09  Score=90.47  Aligned_cols=247  Identities=13%  Similarity=0.123  Sum_probs=140.5

Q ss_pred             EEEEeecCCeEEEEEcCCccccceeccc--CcceEEEEeCC--CCCceEEEee------CCCcEEEEEcCCCceEEEeec
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGH--GDSINEIRTQP--LKPSLVVSAS------KDESVRLWNVQTGICILIFAG   94 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~--~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~   94 (294)
                      .+++++.|+.|..+|..+|+.+..+...  ......+..+|  .++. ++.++      .+|.|..||..+|+.+..+..
T Consensus       123 ~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~  201 (689)
T 1yiq_A          123 KVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYT  201 (689)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             EEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecc
Confidence            6888899999999999999988766532  11111111111  0333 44443      378999999999999887763


Q ss_pred             cCCC----------------------------CCceeEEEEecCCCceEEeeecCCc-------------------EEEE
Q 022590           95 AGGH----------------------------RNEVLSVDFHPSDIYRIASCGMDNT-------------------VKIW  127 (294)
Q Consensus        95 ~~~~----------------------------~~~v~~l~~~~~~~~~l~~~~~dg~-------------------i~~w  127 (294)
                      ..+.                            ...-..+++.| +..+++.+..++.                   |..+
T Consensus       202 ~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          202 VPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             cCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            1100                            01112578888 6677888877653                   8889


Q ss_pred             eccccccccccceeecCCCCCCCCceeeeceEEeecCCCc-eeecceecc---eEEEeeCCCeEEEecCCCCCCCCCCCC
Q 022590          128 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY-VDCNRWLGD---FILSKSVDNEIVLWEPKMKEQSPGEGT  203 (294)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~  203 (294)
                      |.++++..-.....    +...         ......... +..+.+++.   .++.++.+|.++++|.++++.......
T Consensus       281 D~~TG~~~W~~~~~----~~d~---------wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~  347 (689)
T 1yiq_A          281 NADTGEYVWHYQTT----PGDA---------WDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGI  347 (689)
T ss_dssp             ETTTCCEEEEEESS----TTCC---------SCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred             EccCCceeEeeecC----Cccc---------ccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccc
Confidence            98885432211100    0000         000000000 111122343   788899999999999998874210000


Q ss_pred             ce--eeee--------------------------eecC--CCCeeEEEEcccCCcceEEEEcC-----------------
Q 022590          204 AD--ILQK--------------------------YPVP--ECDIWFIKFSCDFHYNAAAIGNR-----------------  236 (294)
Q Consensus       204 ~~--~~~~--------------------------~~~~--~~~i~~~~~~~~~~~~~l~~~~~-----------------  236 (294)
                      ..  -...                          .+..  ......++++|+..  ++++...                 
T Consensus       348 ~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~--~~yv~~~~~~~~~~~~~~~~~~~~  425 (689)
T 1yiq_A          348 VPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG--LVYIPAHIMSAYYEHIPEAPKRNP  425 (689)
T ss_dssp             SCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT--EEEEEEEECCEEEECCSSCCCCCS
T ss_pred             cccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC--EEEEeccccceeeeeccccccccc
Confidence            00  0000                          0000  00112356777653  4444311                 


Q ss_pred             ----------------------------CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEE
Q 022590          237 ----------------------------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR  288 (294)
Q Consensus       237 ----------------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v  288 (294)
                                                  +|.|+.||+.+++.+......     .++..-.+...+.+++.|+.||.++.
T Consensus       426 ~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-----~~~~~g~~~tagglvf~gt~dg~l~a  500 (689)
T 1yiq_A          426 FKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV-----TIFNGGTLSTAGNLVFEGSADGRVIA  500 (689)
T ss_dssp             CTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES-----SSCCCCEEEETTTEEEEECTTSEEEE
T ss_pred             cccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC-----CCccCccceECCCEEEEECCCCcEEE
Confidence                                        378999999999755444332     22333456667889999999999999


Q ss_pred             EecCC
Q 022590          289 WDAIP  293 (294)
Q Consensus       289 w~~~~  293 (294)
                      ||.++
T Consensus       501 ~D~~t  505 (689)
T 1yiq_A          501 YAADT  505 (689)
T ss_dssp             EETTT
T ss_pred             EECCC
Confidence            99875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.27  E-value=1.6e-08  Score=73.32  Aligned_cols=194  Identities=9%  Similarity=0.033  Sum_probs=126.2

Q ss_pred             ccceecccCcc--eEEEEeCCCCCceEEEeeCCC--cEEEEEcCCCceEEEeeccCCCCCceeE--EEEecCCCceEEee
Q 022590           45 LHKSFVGHGDS--INEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEVLS--VDFHPSDIYRIASC  118 (294)
Q Consensus        45 ~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~--l~~~~~~~~~l~~~  118 (294)
                      .++++. |...  ...|.|+  ++.++.+.+.+|  .|+++|+.+++.+..+..    ......  ++..  ++.+.+..
T Consensus        33 vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l----~~~~FgeGit~~--g~~ly~lt  103 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL----GKRYFGEGISDW--KDKIVGLT  103 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEE
T ss_pred             EEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEec----CCccceeEEEEe--CCEEEEEE
Confidence            345554 4433  4778887  457778888776  899999999999988863    233333  4554  45555666


Q ss_pred             ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCC
Q 022590          119 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS  198 (294)
Q Consensus       119 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  198 (294)
                      -.++.+.++|..+.+                       .+..+... ..-..+++++..|+.+..++.|.++|..+.+  
T Consensus       104 w~~~~v~v~D~~t~~-----------------------~~~ti~~~-~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~--  157 (262)
T 3nol_A          104 WKNGLGFVWNIRNLR-----------------------QVRSFNYD-GEGWGLTHNDQYLIMSDGTPVLRFLDPESLT--  157 (262)
T ss_dssp             SSSSEEEEEETTTCC-----------------------EEEEEECS-SCCCCEEECSSCEEECCSSSEEEEECTTTCS--
T ss_pred             eeCCEEEEEECccCc-----------------------EEEEEECC-CCceEEecCCCEEEEECCCCeEEEEcCCCCe--
Confidence            678999999998843                       22222221 2224566677777777778899999998765  


Q ss_pred             CCCCCceeeeeeecC-----CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc-cc-------ccCCCe
Q 022590          199 PGEGTADILQKYPVP-----ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HA-------QSKSPI  265 (294)
Q Consensus       199 ~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~-------~~~~~v  265 (294)
                             .+..++..     -..++.+.+. ++  .+.+..-.++.|.+.|..+++......+. ..       ......
T Consensus       158 -------v~~~I~V~~~g~~~~~lNELe~~-~G--~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl  227 (262)
T 3nol_A          158 -------PVRTITVTAHGEELPELNELEWV-DG--EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL  227 (262)
T ss_dssp             -------EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred             -------EEEEEEeccCCccccccceeEEE-CC--EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence                   33443331     1334556776 55  45565667889999999999755444443 10       112356


Q ss_pred             EEEEEccCCCEEEEeccC
Q 022590          266 RQTAMSYDGSTILSCCED  283 (294)
Q Consensus       266 ~~~~~s~~~~~l~s~~~d  283 (294)
                      +.+||+|+++.|+..+..
T Consensus       228 NGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          228 NGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EEEEEETTTTEEEEEETT
T ss_pred             EEEEEcCCCCEEEEECCC
Confidence            899999988777766543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.26  E-value=4.6e-09  Score=76.95  Aligned_cols=200  Identities=11%  Similarity=0.014  Sum_probs=128.6

Q ss_pred             eEEEEEeecCCCceEEEEeec--CCeEEEEEcCCccccceecccCc-ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590           11 FYTVSWACNVDGIPFLVAGGI--NGIIRVIDVSNEKLHKSFVGHGD-SINEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ...++|+  +++. +.++.+.  ++.|+++|+.+++.+..+.-... ....+++.  ++.+.++...++.+.++|..+.+
T Consensus        23 ~~Gl~~~--~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~   97 (266)
T 2iwa_A           23 TQGLVYA--ENDT-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS   97 (266)
T ss_dssp             EEEEEEC--STTE-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred             cccEEEe--CCCe-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence            4678886  7775 4444443  57999999999998887653222 22345555  34566666778999999999999


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      .+..+..  + ...  ...+++ ++..++++..++.|.++|..+.+......                  +......-..
T Consensus        98 v~~~i~~--g-~~~--g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~------------------Vg~~~~p~~~  153 (266)
T 2iwa_A           98 NIKNFTH--Q-MKD--GWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHN------------------VKYNGHRVIR  153 (266)
T ss_dssp             EEEEEEC--C-SSS--CCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEE------------------CEETTEECCC
T ss_pred             EEEEEEC--C-CCC--eEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEE------------------ECCCCccccc
Confidence            9988863  2 122  233445 44445555568899999998743211110                  0000001112


Q ss_pred             eeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC-------------CCCeeEEEEcccCCcceEEE
Q 022590          168 VDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-------------ECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       168 i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~i~~~~~~~~~~~~~l~~  233 (294)
                      +..+.|. +..++....++.|.+.|+.+++         .+..+...             ......++++|+++ .++++
T Consensus       154 ~nele~~dg~lyvn~~~~~~V~vID~~tg~---------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~-~lfVT  223 (266)
T 2iwa_A          154 LNELEYINGEVWANIWQTDCIARISAKDGT---------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENK-RIFVT  223 (266)
T ss_dssp             EEEEEEETTEEEEEETTSSEEEEEETTTCC---------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTT-EEEEE
T ss_pred             ceeEEEECCEEEEecCCCCeEEEEECCCCc---------EEEEEECCCcccccccccccccCceEEEEEcCCCC-EEEEE
Confidence            3455554 4444444467899999999876         34444321             13568999999987 68888


Q ss_pred             EcCCCeEEEEeccCCC
Q 022590          234 GNREGKIFVWELQSSP  249 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~  249 (294)
                      +...+.+...++....
T Consensus       224 gk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          224 GKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             ETTCSEEEEEEEEECC
T ss_pred             CCCCCeEEEEEEeccc
Confidence            8899999999987653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.24  E-value=1.9e-08  Score=77.19  Aligned_cols=181  Identities=15%  Similarity=0.032  Sum_probs=108.0

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc----cCcceEEEEeCCCCCceEEEeeCC----CcEE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASKD----ESVR   79 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~s~~~d----g~i~   79 (294)
                      ...+.+++|.  |+|+ ++++ +.+ .|.+||..+++.......    ....+++++++| +++++++...+    +...
T Consensus        89 ~~~v~~i~~~--~dg~-l~v~-~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~  162 (326)
T 2ghs_A           89 PFMGSALAKI--SDSK-QLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGS  162 (326)
T ss_dssp             SSCEEEEEEE--ETTE-EEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEE
T ss_pred             CCcceEEEEe--CCCe-EEEE-ECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceE
Confidence            3567888887  8887 5554 444 599999887765322211    124689999999 77766654321    2334


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceE-EeeecCCcEEEEecc--cc-ccccccceeecCCCCCCCCceee
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMK--EF-WTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l-~~~~~dg~i~~wd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                      ||.+.+++......    .......++|+| +++.+ ++.+.++.|.+||+.  ++ ....                  .
T Consensus       163 l~~~~~g~~~~~~~----~~~~~~~i~~s~-dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~------------------~  219 (326)
T 2ghs_A          163 IYHVAKGKVTKLFA----DISIPNSICFSP-DGTTGYFVDTKVNRLMRVPLDARTGLPTGK------------------A  219 (326)
T ss_dssp             EEEEETTEEEEEEE----EESSEEEEEECT-TSCEEEEEETTTCEEEEEEBCTTTCCBSSC------------------C
T ss_pred             EEEEeCCcEEEeeC----CCcccCCeEEcC-CCCEEEEEECCCCEEEEEEcccccCCcccC------------------c
Confidence            44443444332222    334568999999 66544 555567899999986  32 1000                  0


Q ss_pred             eceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc-ccCC
Q 022590          156 FPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFH  227 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  227 (294)
                      .....+.........+.++  |++.++...++.|..||.. ++         .+..+..+...+.+++|+ +++.
T Consensus       220 ~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~---------~~~~i~~~~~~~~~~af~g~d~~  284 (326)
T 2ghs_A          220 EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GN---------HIARYEVPGKQTTCPAFIGPDAS  284 (326)
T ss_dssp             EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CC---------EEEEEECSCSBEEEEEEESTTSC
T ss_pred             eEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CC---------EEEEEECCCCCcEEEEEecCCCC
Confidence            0011111122334556665  6666665567899999983 32         345566666678999998 7764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.23  E-value=1.7e-07  Score=69.62  Aligned_cols=226  Identities=6%  Similarity=-0.107  Sum_probs=131.0

Q ss_pred             EEEEeecCCeEEEEEcCCcccc-----ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC
Q 022590           25 FLVAGGINGIIRVIDVSNEKLH-----KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR   99 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~   99 (294)
                      +|+.+.. +.|+.++++.....     ..+......+..++|++.++.++++-..++.|..+++..+.....+.   ...
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~---~~~   78 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR---QDL   78 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC---TTC
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE---CCC
Confidence            4555543 47999998765421     11222234678999998455566666667899999997655433332   122


Q ss_pred             CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cce
Q 022590          100 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF  177 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~  177 (294)
                      .....++++|.++.++++-...+.|.++++.....                       .............++++  +..
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-----------------------~~~~~~~~~~P~~i~vd~~~g~  135 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-----------------------RVLFDTGLVNPRGIVTDPVRGN  135 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----------------------EEEECSSCSSEEEEEEETTTTE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-----------------------EEEEECCCCCccEEEEeeCCCE
Confidence            46789999984556666666678899998864210                       00011111234556665  345


Q ss_pred             EEEeeC---CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee
Q 022590          178 ILSKSV---DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA  254 (294)
Q Consensus       178 l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  254 (294)
                      |+.+..   .+.|..+++.....       ..+  ..........+++++++. .+.++-...+.|..+|......... 
T Consensus       136 lyv~~~~~~~~~I~~~~~dg~~~-------~~~--~~~~~~~P~gia~d~~~~-~lyv~d~~~~~I~~~~~~g~~~~~~-  204 (267)
T 1npe_A          136 LYWTDWNRDNPKIETSHMDGTNR-------RIL--AQDNLGLPNGLTFDAFSS-QLCWVDAGTHRAECLNPAQPGRRKV-  204 (267)
T ss_dssp             EEEEECCSSSCEEEEEETTSCCC-------EEE--ECTTCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTEEEEEEE-
T ss_pred             EEEEECCCCCcEEEEEecCCCCc-------EEE--EECCCCCCcEEEEcCCCC-EEEEEECCCCEEEEEecCCCceEEE-
Confidence            444443   36888888753221       111  112234577899999764 3555666678999999875432111 


Q ss_pred             eccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          255 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       255 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                       ..  . ......++.. ++.++++....+.|.++|..+
T Consensus       205 -~~--~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          205 -LE--G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             -EE--C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             -ec--C-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCC
Confidence             11  1 1233566654 344444444567898888753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.20  E-value=2.8e-07  Score=68.47  Aligned_cols=222  Identities=6%  Similarity=-0.061  Sum_probs=127.9

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      ....++|.  +++..++++-..++.|..++.+.......+.........+++.+.++.++++-...+.|.++++......
T Consensus        37 ~~~gi~~d--~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           37 VIIGLAFD--CVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEEEEEE--TTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEe--cCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence            34567776  7655366666677899999987655433333223567899999844556666666789999998644332


Q ss_pred             EEeeccCCCCCceeEEEEecCCCceEEeeec--CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           90 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGM--DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        90 ~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      ....   ........++++|.++.++++...  .+.|..+++.....                       ..........
T Consensus       115 ~~~~---~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-----------------------~~~~~~~~~~  168 (267)
T 1npe_A          115 VLFD---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-----------------------RILAQDNLGL  168 (267)
T ss_dssp             EEEC---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-----------------------EEEECTTCSC
T ss_pred             EEEE---CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-----------------------EEEEECCCCC
Confidence            2222   122457899999944554444433  46788887754110                       0001111234


Q ss_pred             eeeccee--cceE-EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          168 VDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       168 i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      ...++++  ++.| ++-...+.|..+|+....         ....... ......++.  ++. .++++....+.|..+|
T Consensus       169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~---------~~~~~~~-~~~P~gi~~--d~~-~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG---------RRKVLEG-LQYPFAVTS--YGK-NLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEE---------EEEEEEC-CCSEEEEEE--ETT-EEEEEETTTTEEEEEE
T ss_pred             CcEEEEcCCCCEEEEEECCCCEEEEEecCCCc---------eEEEecC-CCCceEEEE--eCC-EEEEEECCCCeEEEEe
Confidence            4566665  4444 555566899999987432         1111121 233455654  332 4555555678999999


Q ss_pred             ccCCCceeeeeccccccCCCeEEEEEccCCC
Q 022590          245 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGS  275 (294)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  275 (294)
                      ..+++.  ...+.. +.......+++.|++.
T Consensus       236 ~~~g~~--~~~i~~-g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          236 LAISKE--MDTFHP-HKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTTTEE--EEEECC-SSCCCCCCEEEECSCC
T ss_pred             CCCCCc--eEEEcc-ccccccceeeecCccC
Confidence            988753  233321 1112356788888764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.16  E-value=8.8e-08  Score=69.44  Aligned_cols=193  Identities=8%  Similarity=-0.041  Sum_probs=125.3

Q ss_pred             ccceecccCcc--eEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC
Q 022590           45 LHKSFVGHGDS--INEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN  122 (294)
Q Consensus        45 ~~~~~~~h~~~--v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg  122 (294)
                      .+.++. |...  ...|.|+.  +.++++.+.+|.|+++|+.+++.+..+ .  ....---.+++.  ++.+.+..-.++
T Consensus        45 Vv~~~p-hd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l--~~~~FgeGit~~--g~~Ly~ltw~~~  116 (268)
T 3nok_A           45 IIREYP-HATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R--LGNIFAEGLASD--GERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEE-CCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E--CTTCCEEEEEEC--SSCEEEEESSSC
T ss_pred             EEEEEc-CCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C--CCCcceeEEEEe--CCEEEEEEccCC
Confidence            445553 4332  46788874  678888899999999999999988877 2  122122345554  456566666789


Q ss_pred             cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCC
Q 022590          123 TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEG  202 (294)
Q Consensus       123 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  202 (294)
                      .+.+||..+.+                       .+..+.. ...-..+++++..|+.+..++.|.++|..+.+      
T Consensus       117 ~v~V~D~~Tl~-----------------------~~~ti~~-~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~------  166 (268)
T 3nok_A          117 LLFTWSGMPPQ-----------------------RERTTRY-SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFA------  166 (268)
T ss_dssp             EEEEEETTTTE-----------------------EEEEEEC-SSCCCCEEEETTEEEEECSSSEEEEECTTTCC------
T ss_pred             EEEEEECCcCc-----------------------EEEEEeC-CCceeEEecCCCEEEEECCCCEEEEEcCCCCe------
Confidence            99999999843                       2222222 22235666778888777779999999998765      


Q ss_pred             CceeeeeeecCC-----CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc---------cccCCCeEEE
Q 022590          203 TADILQKYPVPE-----CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH---------AQSKSPIRQT  268 (294)
Q Consensus       203 ~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~v~~~  268 (294)
                         .+..+....     ..++.+.|. ++  .+.+..-.++.|.+.|..+++......+..         .....-.+.|
T Consensus       167 ---v~~~I~V~~~g~~v~~lNeLe~~-dG--~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGI  240 (268)
T 3nok_A          167 ---LVGAVQVKLRGQPVELINELECA-NG--VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGI  240 (268)
T ss_dssp             ---EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEE
T ss_pred             ---EEEEEEeCCCCcccccccccEEe-CC--EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEE
Confidence               333333211     234566766 55  455555578899999999997554444330         1122467999


Q ss_pred             EEccCCCEEEEec
Q 022590          269 AMSYDGSTILSCC  281 (294)
Q Consensus       269 ~~s~~~~~l~s~~  281 (294)
                      |++|+++.|+..+
T Consensus       241 A~dp~~~rlfVTG  253 (268)
T 3nok_A          241 AVEPGSGRIFMTG  253 (268)
T ss_dssp             EECTTTCCEEEEE
T ss_pred             EEcCCCCEEEEeC
Confidence            9999766555444

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.14  E-value=1.9e-07  Score=67.06  Aligned_cols=193  Identities=10%  Similarity=-0.036  Sum_probs=123.4

Q ss_pred             ccceecccCc--ceEEEEeCCCCCceEEEeeCCC--cEEEEEcCCCceEEEeeccCCCCCce--eEEEEecCCCceEEee
Q 022590           45 LHKSFVGHGD--SINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGICILIFAGAGGHRNEV--LSVDFHPSDIYRIASC  118 (294)
Q Consensus        45 ~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v--~~l~~~~~~~~~l~~~  118 (294)
                      .+.++. |..  -...+.|++  +.++.+.+.+|  .|+.+|+.+++.+..+..    ....  -.+++.  ++.+....
T Consensus        11 v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l----~~~~fgeGi~~~--~~~ly~lt   81 (243)
T 3mbr_X           11 VVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEV----PPPYFGAGIVAW--RDRLIQLT   81 (243)
T ss_dssp             EEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEEC----CTTCCEEEEEEE--TTEEEEEE
T ss_pred             EEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeC----CCCcceeEEEEe--CCEEEEEE
Confidence            344453 443  356899986  56777777754  899999999999988863    2233  334444  55666666


Q ss_pred             ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCC
Q 022590          119 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQS  198 (294)
Q Consensus       119 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  198 (294)
                      -.++.+.++|..+.+.                       +..+... ..-..+++++..|+.+..++.|.++|..+.+  
T Consensus        82 w~~~~v~v~D~~tl~~-----------------------~~ti~~~-~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~--  135 (243)
T 3mbr_X           82 WRNHEGFVYDLATLTP-----------------------RARFRYP-GEGWALTSDDSHLYMSDGTAVIRKLDPDTLQ--  135 (243)
T ss_dssp             SSSSEEEEEETTTTEE-----------------------EEEEECS-SCCCEEEECSSCEEEECSSSEEEEECTTTCC--
T ss_pred             eeCCEEEEEECCcCcE-----------------------EEEEeCC-CCceEEeeCCCEEEEECCCCeEEEEeCCCCe--
Confidence            7789999999988432                       2222221 2224556667777776778999999998765  


Q ss_pred             CCCCCceeeeeeecCC-----CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc---------cccCCC
Q 022590          199 PGEGTADILQKYPVPE-----CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH---------AQSKSP  264 (294)
Q Consensus       199 ~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~~~~~  264 (294)
                             .+..++...     ..++.+.+. ++  .+.+..-.+..|.+.|.++++......+..         .....-
T Consensus       136 -------~~~~I~V~~~g~~~~~lNeLe~~-~G--~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~v  205 (243)
T 3mbr_X          136 -------QVGSIKVTAGGRPLDNLNELEWV-NG--ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDV  205 (243)
T ss_dssp             -------EEEEEECEETTEECCCEEEEEEE-TT--EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSC
T ss_pred             -------EEEEEEEccCCcccccceeeEEe-CC--EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCc
Confidence                   333333311     234556655 44  355555568899999999997554444331         012245


Q ss_pred             eEEEEEccCCCEEEEecc
Q 022590          265 IRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       265 v~~~~~s~~~~~l~s~~~  282 (294)
                      .+.+|++|+++.|+..+.
T Consensus       206 lNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          206 LNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEEEETTTTEEEEEET
T ss_pred             eEEEEEcCCCCEEEEECC
Confidence            789999998776665543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.14  E-value=6.6e-08  Score=70.07  Aligned_cols=181  Identities=16%  Similarity=0.153  Sum_probs=113.4

Q ss_pred             EEEEEeecCCCceEEEEeecCC--eEEEEEcCCccccceecccCcceEE--EEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590           12 YTVSWACNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGDSINE--IRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~h~~~v~~--~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ..+.|+   ++. +..+.+.+|  .|+++|+++++.+..+.... ....  ++..  ++.+.++...++.+.++|..+.+
T Consensus        46 qGL~~~---~~~-LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           46 EGFFYR---NGY-FYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEE---TTE-EEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred             ceEEEE---CCE-EEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence            455654   565 777777766  89999999999988876433 3333  4443  44566666678999999999999


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC-C
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-N  166 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  166 (294)
                      .+..+..    ...-..++  + ++..|+.+..++.|.++|..+........                  +. ..+.+ .
T Consensus       119 ~~~ti~~----~~eG~glt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~------------------V~-~~g~~~~  172 (262)
T 3nol_A          119 QVRSFNY----DGEGWGLT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTIT------------------VT-AHGEELP  172 (262)
T ss_dssp             EEEEEEC----SSCCCCEE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEE------------------CE-ETTEECC
T ss_pred             EEEEEEC----CCCceEEe--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEE------------------ec-cCCcccc
Confidence            9999883    22223444  4 44445555557889999998743211111                  00 00111 2


Q ss_pred             ceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec------------CCCCeeEEEEcccCCcceEEE
Q 022590          167 YVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV------------PECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       167 ~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      .++.+.|. |...+..-.++.|.+.|.++++.         +..+..            .....+.++++|+.+ .++++
T Consensus       173 ~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V---------~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~-~lfVT  242 (262)
T 3nol_A          173 ELNELEWVDGEIFANVWQTNKIVRIDPETGKV---------TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH-RLFVT  242 (262)
T ss_dssp             CEEEEEEETTEEEEEETTSSEEEEECTTTCBE---------EEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT-EEEEE
T ss_pred             ccceeEEECCEEEEEEccCCeEEEEECCCCcE---------EEEEECCcCccccccccCcCCceEEEEEcCCCC-EEEEE
Confidence            23345554 55555544688999999998763         222222            124578899999886 56666


Q ss_pred             Ec
Q 022590          234 GN  235 (294)
Q Consensus       234 ~~  235 (294)
                      |-
T Consensus       243 GK  244 (262)
T 3nol_A          243 GK  244 (262)
T ss_dssp             ET
T ss_pred             CC
Confidence            63

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.14  E-value=1.3e-08  Score=80.05  Aligned_cols=217  Identities=12%  Similarity=0.011  Sum_probs=126.4

Q ss_pred             EEEEeecCCCceEEEEee----------cCCeEEEEEcCCccccceeccc-------CcceEEEEeCCCCCceEEEeeC-
Q 022590           13 TVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH-------GDSINEIRTQPLKPSLVVSASK-   74 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~~~-   74 (294)
                      .++++  |||+ +++++.          .++.|.++|..+++.+.++.-.       ......++++| ++++++.+.. 
T Consensus       122 gia~S--pDgk-~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-DGk~lyV~n~~  197 (426)
T 3c75_H          122 HPVAA--EDGS-FFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-DNKNLLFYQFS  197 (426)
T ss_dssp             EEEEC--TTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-TSSEEEEEECS
T ss_pred             ceEEC--CCCC-EEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEecC
Confidence            56665  9999 565554          4678999999999988877532       23456789999 8888887764 


Q ss_pred             -CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccc--cceeecCCCCC---
Q 022590           75 -DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVE--KSFTWTDLPSK---  148 (294)
Q Consensus        75 -dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~--~~~~~~~~~~~---  148 (294)
                       ++.|.+.|+.+++.+..+..    .+.   ....|.+...+++.+.||.+.+.+....+....  ..+.....+..   
T Consensus       198 ~~~~VsVID~~t~kvv~~I~v----~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~  270 (426)
T 3c75_H          198 PAPAVGVVDLEGKTFDRMLDV----PDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHP  270 (426)
T ss_dssp             SSCEEEEEETTTTEEEEEEEC----CSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCC
T ss_pred             CCCeEEEEECCCCeEEEEEEc----CCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEe
Confidence             58899999999999888773    111   223332335555666677776666633221100  00000000000   


Q ss_pred             ----CCCce----eeeceEEeec-----------------------CCCceeeccee--cceEEEeeC----------CC
Q 022590          149 ----FPTKY----VQFPVFIASV-----------------------HSNYVDCNRWL--GDFILSKSV----------DN  185 (294)
Q Consensus       149 ----~~~~~----~~~~~~~~~~-----------------------~~~~i~~~~~~--~~~l~~~~~----------d~  185 (294)
                          .....    ....+.....                       .......+.++  ++.+++...          ++
T Consensus       271 ~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~  350 (426)
T 3c75_H          271 AFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR  350 (426)
T ss_dssp             EECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred             eecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence                00000    0000000000                       00111113444  455555432          35


Q ss_pred             eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc-CCCeEEEEeccCCCce
Q 022590          186 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPPV  251 (294)
Q Consensus       186 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~  251 (294)
                      .|.++|..+.+         .+..++... ....+.|+|+++. .+++.. .++.|.++|+.+.+.+
T Consensus       351 ~VsVID~~T~k---------vv~~I~vg~-~P~gia~spDg~~-~lyv~n~~s~~VsVID~~t~kvv  406 (426)
T 3c75_H          351 FVVVLNAETGE---------RINKIELGH-EIDSINVSQDAEP-LLYALSAGTQTLHIYDAATGEEL  406 (426)
T ss_dssp             EEEEEETTTCC---------EEEEEEEEE-EECEEEECCSSSC-EEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEEEEECCCCe---------EEEEEECCC-CcCeEEEccCCCE-EEEEEcCCCCeEEEEECCCCCEE
Confidence            79999998776         455555432 4778999999952 555555 6999999999998743

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.13  E-value=6.2e-08  Score=70.21  Aligned_cols=178  Identities=9%  Similarity=0.020  Sum_probs=116.9

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceE--EEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN--EIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      ..+.|.   ++. +..+.+.+|.|+++|+++++.+..+ -. ....  .+++.  ++.+.++...++.+.++|..+.+.+
T Consensus        58 qGL~~~---~~~-Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           58 QGLVFH---QGH-FFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             EEEEEE---TTE-EEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             ceEEEE---CCE-EEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence            456664   344 7888888899999999999998887 32 3333  35554  4566666778899999999999999


Q ss_pred             EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC---C
Q 022590           90 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS---N  166 (294)
Q Consensus        90 ~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  166 (294)
                      ..+..    ...-..+++   ++..|+.+..++.|.++|..+.+.....                     ....+.   .
T Consensus       130 ~ti~~----~~eGwGLt~---Dg~~L~vSdGs~~l~~iDp~T~~v~~~I---------------------~V~~~g~~v~  181 (268)
T 3nok_A          130 RTTRY----SGEGWGLCY---WNGKLVRSDGGTMLTFHEPDGFALVGAV---------------------QVKLRGQPVE  181 (268)
T ss_dssp             EEEEC----SSCCCCEEE---ETTEEEEECSSSEEEEECTTTCCEEEEE---------------------ECEETTEECC
T ss_pred             EEEeC----CCceeEEec---CCCEEEEECCCCEEEEEcCCCCeEEEEE---------------------EeCCCCcccc
Confidence            99883    233355554   3445555556889999999884321111                     111122   2


Q ss_pred             ceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-------------CCCCeeEEEEcccCCcceEE
Q 022590          167 YVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-------------PECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       167 ~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~~~l~  232 (294)
                      .++.+.|. |...+..-.+..|.+.|.++++.         +..+..             .....+.+++.|+.+ .+++
T Consensus       182 ~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V---------~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~-rlfV  251 (268)
T 3nok_A          182 LINELECANGVIYANIWHSSDVLEIDPATGTV---------VGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG-RIFM  251 (268)
T ss_dssp             CEEEEEEETTEEEEEETTCSEEEEECTTTCBE---------EEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC-CEEE
T ss_pred             cccccEEeCCEEEEEECCCCeEEEEeCCCCcE---------EEEEECCCCcccccccccCcCCceEEEEEcCCCC-EEEE
Confidence            33455564 55555444688999999998863         222221             234678999999886 5777


Q ss_pred             EEc
Q 022590          233 IGN  235 (294)
Q Consensus       233 ~~~  235 (294)
                      +|-
T Consensus       252 TGK  254 (268)
T 3nok_A          252 TGK  254 (268)
T ss_dssp             EET
T ss_pred             eCC
Confidence            764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.11  E-value=8.6e-08  Score=80.72  Aligned_cols=236  Identities=9%  Similarity=0.035  Sum_probs=134.0

Q ss_pred             EEEEeec------CCeEEEEEcCCccccceecccCc--------------------------------ceEEEEeCCCCC
Q 022590           25 FLVAGGI------NGIIRVIDVSNEKLHKSFVGHGD--------------------------------SINEIRTQPLKP   66 (294)
Q Consensus        25 ~l~~~~~------dg~i~iw~~~~~~~~~~~~~h~~--------------------------------~v~~~~~~~~~~   66 (294)
                      .+++++.      +|.|+.+|..+++.+.++.....                                ....++++| +.
T Consensus       176 ~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~  254 (677)
T 1kb0_A          176 KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-EL  254 (677)
T ss_dssp             EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TT
T ss_pred             EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CC
Confidence            4555553      69999999999988766643211                                113577888 66


Q ss_pred             ceEEEeeCCC-------------------cEEEEEcCCCceEEEeeccCCCC-------CceeEEEEecCCC---ceEEe
Q 022590           67 SLVVSASKDE-------------------SVRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDI---YRIAS  117 (294)
Q Consensus        67 ~~l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~~---~~l~~  117 (294)
                      .+++.+..++                   .|..+|..+|+.+..++.. .|.       ....-+.... ++   ..++.
T Consensus       255 ~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~  332 (677)
T 1kb0_A          255 NTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET-PGDNWDYTSTQPMILADIKI-AGKPRKVILH  332 (677)
T ss_dssp             TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCCEEEEEEE-TTEEEEEEEE
T ss_pred             CEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC-CCcccccccCCCcEEEeccc-CCcEeeEEEE
Confidence            7777776654                   5999999999998887742 121       1222333333 45   67899


Q ss_pred             eecCCcEEEEeccccccccccceeecCCCCC--CCCceee--------eceEEeecCCC--ceeeccee--cceEEEeeC
Q 022590          118 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK--FPTKYVQ--------FPVFIASVHSN--YVDCNRWL--GDFILSKSV  183 (294)
Q Consensus       118 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~--~i~~~~~~--~~~l~~~~~  183 (294)
                      ++.+|.++++|..+++......+........  .......        ..........+  .-..++++  ..++++...
T Consensus       333 ~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~  412 (677)
T 1kb0_A          333 APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ  412 (677)
T ss_dssp             CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred             ECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence            9999999999999865543322110000000  0000000        00000000000  00133444  344444322


Q ss_pred             -------------------------------------------CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE
Q 022590          184 -------------------------------------------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI  220 (294)
Q Consensus       184 -------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  220 (294)
                                                                 .+.|..||+.+++         .+-..+.. .++...
T Consensus       413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~---------~~W~~~~~-~~~~~g  482 (677)
T 1kb0_A          413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK---------AAWSVEHV-SPWNGG  482 (677)
T ss_dssp             ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE---------EEEEEEES-SSCCCC
T ss_pred             hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc---------EEeecCCC-CCCcCc
Confidence                                                       2779999998775         23333322 223344


Q ss_pred             EEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEE
Q 022590          221 KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL  278 (294)
Q Consensus       221 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  278 (294)
                      .+...+  ..++.++.+|.+++||.++++.+..........   -.-+.+.++|+.++
T Consensus       483 ~~~~~g--~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~---~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          483 TLTTAG--NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV---AAPSTYMVDGRQYV  535 (677)
T ss_dssp             EEEETT--TEEEEECTTSEEEEEETTTCCEEEEEECSSCCC---SCCEEEEETTEEEE
T ss_pred             ceEeCC--CEEEEECCCCcEEEEECCCCceeeeeeCCCCcc---cCCEEEEeCCEEEE
Confidence            455665  478888999999999999998766665543222   23455677886443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.10  E-value=1.3e-07  Score=79.82  Aligned_cols=231  Identities=11%  Similarity=0.088  Sum_probs=129.2

Q ss_pred             CCeEEEEEcCCccccceeccc-------------------------------CcceEEEEeCCCCCceEEEeeCCCc---
Q 022590           32 NGIIRVIDVSNEKLHKSFVGH-------------------------------GDSINEIRTQPLKPSLVVSASKDES---   77 (294)
Q Consensus        32 dg~i~iw~~~~~~~~~~~~~h-------------------------------~~~v~~~~~~~~~~~~l~s~~~dg~---   77 (294)
                      +|.|+.||..+|+.+..+...                               ......+++.| +..+++.+..++.   
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~  260 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD  260 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence            689999999999987665421                               01112577888 6678888877764   


Q ss_pred             ----------------EEEEEcCCCceEEEeeccCCCC-------CceeEEEEecCCCc---eEEeeecCCcEEEEeccc
Q 022590           78 ----------------VRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDIY---RIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        78 ----------------i~vwd~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~~~---~l~~~~~dg~i~~wd~~~  131 (294)
                                      |..+|..+|+.+..++.. .|.       .++....... ++.   .++.++.+|.++++|.++
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~-~~d~wd~~~~~~~~l~d~~~-~G~~~~~v~~~~~~G~l~~lD~~t  338 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTT-PGDAWDYTATQHMILAELPI-DGKPRKVLMQAPKNGFFYVIDRAT  338 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTT
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCceeEeeecC-CcccccccCCCCcEEEeecc-CCcEEEEEEEECCCCeEEEEECCC
Confidence                            999999999999887642 121       1222222222 443   788999999999999988


Q ss_pred             cccccccceee---cCCCCCCCCcee-----------eeceEEeecCCC--ceeeccee--cceEEEee-----------
Q 022590          132 FWTYVEKSFTW---TDLPSKFPTKYV-----------QFPVFIASVHSN--YVDCNRWL--GDFILSKS-----------  182 (294)
Q Consensus       132 ~~~~~~~~~~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~-----------  182 (294)
                      ++......+..   ............           ...........+  .-..++++  ..++++..           
T Consensus       339 G~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~  418 (689)
T 1yiq_A          339 GELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIP  418 (689)
T ss_dssp             CCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCS
T ss_pred             CCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecc
Confidence            66542221110   000000000000           000000000000  00113333  22333321           


Q ss_pred             ----------------------------------CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCc
Q 022590          183 ----------------------------------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHY  228 (294)
Q Consensus       183 ----------------------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  228 (294)
                                                        .+|.|+.||+.+++         .+-..+.+. +...-.+...+  
T Consensus       419 ~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~---------~~W~~~~~~-~~~~g~~~tag--  486 (689)
T 1yiq_A          419 EAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ---------AAWEVPYVT-IFNGGTLSTAG--  486 (689)
T ss_dssp             SCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE---------EEEEEEESS-SCCCCEEEETT--
T ss_pred             ccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC---------eEeEccCCC-CccCccceECC--
Confidence                                              14779999998776         333333322 22223455555  


Q ss_pred             ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEe
Q 022590          229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSC  280 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~  280 (294)
                      .+++.|+.||.++.||.++++.+....+.......+   +.|..+|+ |+++.
T Consensus       487 glvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p---~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          487 NLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAP---VTYSVDGEQYVTFM  536 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEE
T ss_pred             CEEEEECCCCcEEEEECCCCccceeeeCCCCcccCc---eEEEECCEEEEEEE
Confidence            488889999999999999998766666543322233   56677886 44443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.06  E-value=1.4e-08  Score=78.62  Aligned_cols=213  Identities=9%  Similarity=-0.033  Sum_probs=122.0

Q ss_pred             EEEEeecCCCceEEEEee----------cCCeEEEEEcCCccccceeccc-------CcceEEEEeCCCCCceEEEeeC-
Q 022590           13 TVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH-------GDSINEIRTQPLKPSLVVSASK-   74 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~~~-   74 (294)
                      .+.++  |||+ +++++.          .++.|.+||+.+++.+.++...       ......++++| ++++++.+.. 
T Consensus        69 ~i~~s--pDg~-~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp-DGk~lyVan~~  144 (368)
T 1mda_H           69 LAVAG--HSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFG  144 (368)
T ss_dssp             EEEEC--TTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECS
T ss_pred             ceEEC--CCCC-EEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC-CCCEEEEEccC
Confidence            46665  9998 666664          4689999999999999888643       13457899999 8888887764 


Q ss_pred             -CCcEEE--EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccc-----ccccccc--ceeecC
Q 022590           75 -DESVRL--WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE-----FWTYVEK--SFTWTD  144 (294)
Q Consensus        75 -dg~i~v--wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~-----~~~~~~~--~~~~~~  144 (294)
                       +..+.+  +|..+   +..+..    .+.   ....|.+...+++.+.||.+.+.|+..     ++.....  .+....
T Consensus       145 ~~~~v~V~~iD~~t---v~~i~v----~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~  214 (368)
T 1mda_H          145 SSAAAGLSVPGASD---DQLTKS----ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSS  214 (368)
T ss_dssp             SSCEEEEEETTTEE---EEEEEC----SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCS
T ss_pred             CCCeEEEEEEchhh---ceEEEC----CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCC
Confidence             467888  99877   444442    111   122343445566667788888888765     2211000  000000


Q ss_pred             CCC--CCCCceee---eceEEeec-----------------------CCCceeeccee--cceEEEeeC---------CC
Q 022590          145 LPS--KFPTKYVQ---FPVFIASV-----------------------HSNYVDCNRWL--GDFILSKSV---------DN  185 (294)
Q Consensus       145 ~~~--~~~~~~~~---~~~~~~~~-----------------------~~~~i~~~~~~--~~~l~~~~~---------d~  185 (294)
                      .+.  ........   ..+..+..                       .+.....+.++  ++.++++..         ++
T Consensus       215 ~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~  294 (368)
T 1mda_H          215 QAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE  294 (368)
T ss_dssp             CCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEE
T ss_pred             CccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCC
Confidence            000  00000000   00000000                       00111113344  566665432         23


Q ss_pred             eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc-CCCeEEEEeccCCCc
Q 022590          186 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN-REGKIFVWELQSSPP  250 (294)
Q Consensus       186 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~  250 (294)
                      .+.++|+.+.+         .+..++... ....+.|+|+++ .++++.. .++.|.++|+.+.+.
T Consensus       295 ~~~ViD~~t~~---------vv~~i~vg~-~p~gi~~s~Dg~-~l~va~~~~~~~VsVID~~t~kv  349 (368)
T 1mda_H          295 NTSSVTASVGQ---------TSGPISNGH-DSDAIIAAQDGA-SDNYANSAGTEVLDIYDAASDQD  349 (368)
T ss_dssp             EEEEEESSSCC---------EEECCEEEE-EECEEEECCSSS-CEEEEEETTTTEEEEEESSSCEE
T ss_pred             CEEEEECCCCe---------EEEEEECCC-CcceEEECCCCC-EEEEEccCCCCeEEEEECCCCcE
Confidence            56699998775         344444332 477899999996 3555565 699999999999863

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.06  E-value=1.7e-08  Score=81.56  Aligned_cols=216  Identities=12%  Similarity=0.099  Sum_probs=140.2

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecc-cCcceEEEEe-C-CCCCceEEEee------------------CCCcE
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRT-Q-PLKPSLVVSAS------------------KDESV   78 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~-~-~~~~~~l~s~~------------------~dg~i   78 (294)
                      +||+.++++...++.|.+.|+++.+..+.+.- .......+++ + | ++.++++++                  .++.+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence            57884455555567899999999988774432 2245788887 4 7 777777774                  35689


Q ss_pred             EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC---------------cEEEEeccccccccccceeec
Q 022590           79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN---------------TVKIWSMKEFWTYVEKSFTWT  143 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg---------------~i~~wd~~~~~~~~~~~~~~~  143 (294)
                      .+.|..+.+....+..    .+....++++| ++.++++.+.+.               .+.+.|......         
T Consensus       178 tvID~~t~~v~~qI~V----gg~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~---------  243 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLV----SGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK---------  243 (595)
T ss_dssp             EEEETTTTEEEEEEEE----SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH---------
T ss_pred             EEEECCCCeEEEEEEe----CCCccceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeeccceeE---------
Confidence            9999999988888773    22457788999 777777777653               244444333110         


Q ss_pred             CCCCCCCCceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc
Q 022590          144 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS  223 (294)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  223 (294)
                                                 ..-.|+....    +.|.+.|.++.+.     . ..+..++.. .....+.++
T Consensus       244 ---------------------------~v~~Gk~~~i----~~V~VID~~~~~~-----~-~~~~~Ipvg-~~PhGv~~s  285 (595)
T 1fwx_A          244 ---------------------------AIAAGDYQEL----NGVKVVDGRKEAS-----S-LFTRYIPIA-NNPHGCNMA  285 (595)
T ss_dssp             ---------------------------HHHHTCSEEE----TTEEEEECSGGGC-----C-SSEEEEEEE-SSCCCEEEC
T ss_pred             ---------------------------eccCCCeeEE----CcEEEEeCcccCC-----c-eeEEEEecC-CCceEEEEc
Confidence                                       0001333332    4599999987310     0 013333332 235579999


Q ss_pred             ccCCcceEEEEcCCCeEEEEeccCCCc----------eeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          224 CDFHYNAAAIGNREGKIFVWELQSSPP----------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       224 ~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ||++ ..++++..+..|.++|+.+.+.          ......   .-......++|+|+|...++.-.|+.|.+||++
T Consensus       286 PDGk-~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v---~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          286 PDKK-HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP---ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             TTSS-EEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC---BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CCCC-EEEEeCCCCCeEEEEECcccccccccccCcccceEEEc---CCCCCcceEEECCCCeEEEEEecCCcEEEEEhh
Confidence            9997 4667777899999999986421          011222   222457889999999444566789999999975

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.06  E-value=1.7e-07  Score=73.33  Aligned_cols=194  Identities=11%  Similarity=0.114  Sum_probs=115.0

Q ss_pred             CCCCceEEEeeCCCcEEEEEcCCC----ceEEEeec--c--CCCCCceeEEEEecCCCceEEeeecC------CcEEEEe
Q 022590           63 PLKPSLVVSASKDESVRLWNVQTG----ICILIFAG--A--GGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWS  128 (294)
Q Consensus        63 ~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~--~--~~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~~wd  128 (294)
                      +....+++++..+++|.++|+.+.    +....+..  .  ..-......+...| ++ +++++..+      |.+.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence            634445666778899999999755    44454420  0  00112456678888 77 66666555      7899999


Q ss_pred             ccccccccccceeecCCCCCCCCceeeeceEEeecC--C-Cceeeccee--cceEEEee-------------------CC
Q 022590          129 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH--S-NYVDCNRWL--GDFILSKS-------------------VD  184 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~i~~~~~~--~~~l~~~~-------------------~d  184 (294)
                      ..+++.                       +......  . ..-..+.|+  ++.+++..                   .+
T Consensus       171 ~~T~~v-----------------------~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~  227 (462)
T 2ece_A          171 HYSFEP-----------------------LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYG  227 (462)
T ss_dssp             TTTCCE-----------------------EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSC
T ss_pred             CCCCeE-----------------------EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccC
Confidence            987432                       1222111  1 111123333  66677663                   47


Q ss_pred             CeEEEecCCCCCCCCCCCCceeeeeeecCC--CCeeEEEE--cccCCcceEEEEc------CCCeEEEEeccCCCceeee
Q 022590          185 NEIVLWEPKMKEQSPGEGTADILQKYPVPE--CDIWFIKF--SCDFHYNAAAIGN------REGKIFVWELQSSPPVLIA  254 (294)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~--~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~  254 (294)
                      .+|.+||+.+++         .+..+....  .....+.|  +|+++  +++++.      .++.|.+|..+.++.....
T Consensus       228 d~V~v~D~~~~k---------~~~tI~vg~~g~~P~~i~f~~~Pdg~--~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          228 NRIHFWDLRKRK---------RIHSLTLGEENRMALELRPLHDPTKL--MGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             CEEEEEETTTTE---------EEEEEESCTTEEEEEEEEECSSTTCC--EEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             CEEEEEECCCCc---------EeeEEecCCCCCccceeEeeECCCCC--EEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence            899999998653         455555431  23445555  88885  444444      5678887776654321111


Q ss_pred             ec--ccc--------------ccCCCeEEEEEccCCCEEEEec-cCCcEEEEecC
Q 022590          255 RL--SHA--------------QSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAI  292 (294)
Q Consensus       255 ~~--~~~--------------~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~  292 (294)
                      .+  ...              +.......+.+||||++|.++. ..+.|.+||+.
T Consensus       297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            11  100              0024578899999999998775 46789999985

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.06  E-value=5e-07  Score=64.95  Aligned_cols=190  Identities=9%  Similarity=0.062  Sum_probs=114.6

Q ss_pred             eEEEEEeecCCCceEEEEeecC--CeEEEEEcCCccccceecccCcce-EEEEeCCCCCceEEEeeCCCcEEEEEcCCCc
Q 022590           11 FYTVSWACNVDGIPFLVAGGIN--GIIRVIDVSNEKLHKSFVGHGDSI-NEIRTQPLKPSLVVSASKDESVRLWNVQTGI   87 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~   87 (294)
                      ...+.|.  + +. +..+.+.+  ..|+.+|+.+++.+..+....... -.++..  ++.+.+....++.+.++|..+.+
T Consensus        23 tqGL~~~--~-~~-LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           23 TEGLFYL--R-GH-LYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             EEEEEEE--T-TE-EEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             cccEEEE--C-CE-EEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            4467775  4 54 66666665  489999999999988776433221 234443  45666667788999999999999


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC--
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS--  165 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  165 (294)
                      .+..+..    ...-..++.   ++..|+.+..++.|.++|..+........                     ...+.  
T Consensus        97 ~~~ti~~----~~~Gwglt~---dg~~L~vSdgs~~l~~iDp~t~~~~~~I~---------------------V~~~g~~  148 (243)
T 3mbr_X           97 PRARFRY----PGEGWALTS---DDSHLYMSDGTAVIRKLDPDTLQQVGSIK---------------------VTAGGRP  148 (243)
T ss_dssp             EEEEEEC----SSCCCEEEE---CSSCEEEECSSSEEEEECTTTCCEEEEEE---------------------CEETTEE
T ss_pred             EEEEEeC----CCCceEEee---CCCEEEEECCCCeEEEEeCCCCeEEEEEE---------------------EccCCcc
Confidence            9999883    333355554   34445555568899999998843211111                     11111  


Q ss_pred             -Cceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee----ecCCCCeeEEEEcccCCcceEEEEc
Q 022590          166 -NYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY----PVPECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       166 -~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                       ..++.+.+. +..++..-.+..|.+.|.++++.........+....    .......+.+++.|+.+ .++++|-
T Consensus       149 ~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~-~lfVTGK  223 (243)
T 3mbr_X          149 LDNLNELEWVNGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD-RLFVTGK  223 (243)
T ss_dssp             CCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT-EEEEEET
T ss_pred             cccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC-EEEEECC
Confidence             233445554 554444446788999999987631110000000000    11224678899999886 5666664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.03  E-value=2.2e-06  Score=65.04  Aligned_cols=238  Identities=11%  Similarity=0.047  Sum_probs=131.9

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCC--cEEEEEcCCCc
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGI   87 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~   87 (294)
                      ....++|.  ++|+ ++++-..++.|..||.+.. ....+. ....+..+++.+ +++++++.....  .|..++..+++
T Consensus        33 ~pegia~~--~~g~-lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           33 FLENLASA--PDGT-IFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CEEEEEEC--TTSC-EEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcceEEEC--CCCC-EEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCe
Confidence            45567776  8888 7777768899999997653 333332 345688999999 777666554322  46667777777


Q ss_pred             eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           88 CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        88 ~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      .......  ........++..+ ++..+++-..++.|..+|...........   .......      .+    ...-..
T Consensus       107 ~~~~~~~--~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~---~~~~~~~------~~----~~~~~~  170 (306)
T 2p4o_A          107 VETLLTL--PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLE---HPMLARS------NS----ESVFPA  170 (306)
T ss_dssp             EEEEEEC--TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEE---CGGGSCS------ST----TCCSCS
T ss_pred             EEEEEeC--CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEE---CCccccc------cc----cCCCCc
Confidence            5443331  1222345556555 55555555568888888876421000000   0000000      00    000011


Q ss_pred             eeecceecceE-EEeeCCCeEEEecCCC-CCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          168 VDCNRWLGDFI-LSKSVDNEIVLWEPKM-KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       168 i~~~~~~~~~l-~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      ...+..+++.| ++-...+.|..||+.. +..    .....+...    .....+++.+++  ++.++....+.|.+++.
T Consensus       171 pngis~dg~~lyv~d~~~~~I~~~~~~~~g~~----~~~~~~~~~----~~P~gi~vd~dG--~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          171 ANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKP----GEPEIFVEQ----TNIDDFAFDVEG--NLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             EEEEEEETTEEEEEETTTTEEEEEEBCTTSCB----CCCEEEEES----CCCSSEEEBTTC--CEEEECBTTCCEEEECT
T ss_pred             CCCcCcCCCEEEEEeCCCCEEEEEEeCCCCCC----CccEEEecc----CCCCCeEECCCC--CEEEEeCCCCeEEEECC
Confidence            22234445544 4555678999999875 221    011112111    234568899988  46666666788999997


Q ss_pred             cCCCceeeeeccccccCCCeEEEEEc---cCCCEEEEecc
Q 022590          246 QSSPPVLIARLSHAQSKSPIRQTAMS---YDGSTILSCCE  282 (294)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~  282 (294)
                      . ++........  ......++++|.   |+++.|+.++.
T Consensus       241 ~-G~~~~~~~~~--~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          241 D-RSTTIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             T-CCEEEEECGG--GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             C-CCEEEEeecc--cccCCceEEEEecccCCCCEEEEECC
Confidence            5 4322222222  222458999998   88877766543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.02  E-value=7.4e-08  Score=81.03  Aligned_cols=237  Identities=12%  Similarity=0.095  Sum_probs=135.9

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccC----cceEE-EEeCCCCCceEEEeeC------CCcEEEEEcCCCceEEEee
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHG----DSINE-IRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFA   93 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~----~~v~~-~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~   93 (294)
                      .++.++.|+.|..+|..+|+.+..+....    ..+.+ -...  ++ .++.+..      +|.|..+|..+|+.+..+.
T Consensus       119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV--KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE--TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE--CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            68888899999999999999887665421    11111 0111  33 4444432      5899999999999988876


Q ss_pred             ccCCCC----------------------------CceeEEEEecCCCceEEeeecCC-------------------cEEE
Q 022590           94 GAGGHR----------------------------NEVLSVDFHPSDIYRIASCGMDN-------------------TVKI  126 (294)
Q Consensus        94 ~~~~~~----------------------------~~v~~l~~~~~~~~~l~~~~~dg-------------------~i~~  126 (294)
                      ...+..                            .....+++.| ...+++.+..++                   .|..
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A  274 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            311110                            0112467887 566677776665                   3888


Q ss_pred             EeccccccccccceeecCCCCCCCCceeeeceEEeecCC-------Cc--eeecceecc---eEEEeeCCCeEEEecCCC
Q 022590          127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS-------NY--VDCNRWLGD---FILSKSVDNEIVLWEPKM  194 (294)
Q Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--i~~~~~~~~---~l~~~~~d~~i~iwd~~~  194 (294)
                      +|.++++..-....                     ..|.       .+  +..+.++++   .++.++.+|.++++|..+
T Consensus       275 lD~~tG~~~W~~~~---------------------~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~t  333 (668)
T 1kv9_A          275 IRPDTGKLAWHYQV---------------------TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTN  333 (668)
T ss_dssp             ECTTTCCEEEEEES---------------------STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred             EcCCCCceeeEeec---------------------CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCC
Confidence            88887543221111                     0011       11  111223343   688899999999999998


Q ss_pred             CCCCCCCCC----c---------eeee------------eeecCC--CCeeEEEEcccCCcceEEE--------------
Q 022590          195 KEQSPGEGT----A---------DILQ------------KYPVPE--CDIWFIKFSCDFHYNAAAI--------------  233 (294)
Q Consensus       195 ~~~~~~~~~----~---------~~~~------------~~~~~~--~~i~~~~~~~~~~~~~l~~--------------  233 (294)
                      ++.......    .         ..+.            ..+...  .....++++|+..  .++.              
T Consensus       334 G~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g--~~yv~~~~~~~~~~~~~~  411 (668)
T 1kv9_A          334 GKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG--LVYIPYQEVPGVYRNEGK  411 (668)
T ss_dssp             CCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT--EEEEEEEECCEEECCCGG
T ss_pred             CCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC--EEEEeccccceEeeeecc
Confidence            874210000    0         0000            000000  0011245666542  2222              


Q ss_pred             ----------------------EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          234 ----------------------GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       234 ----------------------~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                                            ...+|.|..||+.+++.+......     .+.....+...+.+++.++.||.++.||.
T Consensus       412 ~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~  486 (668)
T 1kv9_A          412 DFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-----THWNGGTLSTAGNLVFQGTAAGQMHAYSA  486 (668)
T ss_dssp             GCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-----SSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             ccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-----CCCcCceeEeCCCEEEEECCcccchhhhh
Confidence                                  113488999999998755444432     22333445557788999999999999998


Q ss_pred             CC
Q 022590          292 IP  293 (294)
Q Consensus       292 ~~  293 (294)
                      ++
T Consensus       487 ~t  488 (668)
T 1kv9_A          487 DK  488 (668)
T ss_dssp             TT
T ss_pred             hc
Confidence            64

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.99  E-value=8e-08  Score=73.66  Aligned_cols=180  Identities=13%  Similarity=0.032  Sum_probs=117.1

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCC
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHR   99 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~   99 (294)
                      ++|.  +..++.++.|..+|.. ++....+......+.++...+ ++.+++ ++  +.|..+| .+++....+.   ...
T Consensus       146 ~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~-~g~l~v-~t--~~l~~~d-~~g~~~~~~~---~~~  214 (330)
T 3hxj_A          146 EDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGK-DGTIYF-GS--DKVYAIN-PDGTEKWNFY---AGY  214 (330)
T ss_dssp             TTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TCCEEE-ES--SSEEEEC-TTSCEEEEEC---CSS
T ss_pred             CCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcC-CCEEEE-Ee--CEEEEEC-CCCcEEEEEc---cCC
Confidence            5665  7778888999999988 777666665566677788876 565544 44  7789999 6777766665   244


Q ss_pred             CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-cceE
Q 022590          100 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFI  178 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l  178 (294)
                      ..+.++...+ ++. +..++.++.+..+|....                        ...........+..+..+ +..+
T Consensus       215 ~~~~~~~~~~-~g~-l~v~t~~~gl~~~~~~g~------------------------~~~~~~~~~~~~~~~~~~~~g~l  268 (330)
T 3hxj_A          215 WTVTRPAISE-DGT-IYVTSLDGHLYAINPDGT------------------------EKWRFKTGKRIESSPVIGNTDTI  268 (330)
T ss_dssp             CCCSCCEECT-TSC-EEEEETTTEEEEECTTSC------------------------EEEEEECSSCCCSCCEECTTSCE
T ss_pred             cceeceEECC-CCe-EEEEcCCCeEEEECCCCC------------------------EeEEeeCCCCccccceEcCCCeE
Confidence            5688888876 554 666777888888875331                        111112222223334444 5678


Q ss_pred             EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC
Q 022590          179 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  249 (294)
Q Consensus       179 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  249 (294)
                      ..++.+|.|..+|. +++         ....+......+.++...+++   .|..++.+|.+++...+..+
T Consensus       269 ~v~t~~ggl~~~d~-~g~---------~~~~~~~~~~~~~~~~~d~~g---~l~~gt~~G~~~~~~~~~~~  326 (330)
T 3hxj_A          269 YFGSYDGHLYAINP-DGT---------EKWNFETGSWIIATPVIDENG---TIYFGTRNGKFYALFNLEHH  326 (330)
T ss_dssp             EEECTTCEEEEECT-TSC---------EEEEEECSSCCCSCCEECTTC---CEEEECTTSCEEEEEC----
T ss_pred             EEecCCCCEEEECC-CCc---------EEEEEEcCCccccceEEcCCC---EEEEEcCCCeEEEEeccccc
Confidence            88888989999996 433         233444445556666666666   47779999999988776543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.95  E-value=1.1e-06  Score=67.14  Aligned_cols=240  Identities=12%  Similarity=-0.002  Sum_probs=130.4

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc--------------------cCcceEEEEeCCCCCceEE
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG--------------------HGDSINEIRTQPLKPSLVV   70 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------------------h~~~v~~~~~~~~~~~~l~   70 (294)
                      -.+++|.  ++|+ ++.++..++.|..|+..+++.. .+..                    ....+..+++.+.+++ |+
T Consensus        21 p~~i~~d--~~g~-~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~   95 (322)
T 2fp8_A           21 PNSFTFD--STNK-GFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LY   95 (322)
T ss_dssp             CCCEECC--TTCS-SEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EE
T ss_pred             ceEEEEc--CCCC-EEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EE
Confidence            3456775  7887 7888888999999998765432 2210                    1135788999863444 44


Q ss_pred             EeeCCCcEEEEEcCCCceEEEeec-cCC-CCCceeEEEEecCCCceEEeeec-----------------CCcEEEEeccc
Q 022590           71 SASKDESVRLWNVQTGICILIFAG-AGG-HRNEVLSVDFHPSDIYRIASCGM-----------------DNTVKIWSMKE  131 (294)
Q Consensus        71 s~~~dg~i~vwd~~~~~~~~~~~~-~~~-~~~~v~~l~~~~~~~~~l~~~~~-----------------dg~i~~wd~~~  131 (294)
                      .+...+.|..+|..+++. ..+.. ..+ .......+++.+.++++.++-..                 ++.|..+|...
T Consensus        96 v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           96 IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            454445588888765542 22221 001 11346788888723444443221                 25566676654


Q ss_pred             cccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEe-eCCCeEEEecCCCCCCCCCCCCceeee
Q 022590          132 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-SVDNEIVLWEPKMKEQSPGEGTADILQ  208 (294)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~  208 (294)
                      ...                        ............++++  ++.|+.+ ...+.|..|++.....    .....+.
T Consensus       175 ~~~------------------------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~----~~~~~~~  226 (322)
T 2fp8_A          175 KET------------------------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK----GTAEVLV  226 (322)
T ss_dssp             TEE------------------------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT----TCEEEEE
T ss_pred             CEE------------------------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC----CccceEE
Confidence            210                        0000011223445665  5555544 5568999999875321    0111222


Q ss_pred             eeecCCCCeeEEEEcccCCcceEEEEcC----------CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEE
Q 022590          209 KYPVPECDIWFIKFSCDFHYNAAAIGNR----------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL  278 (294)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  278 (294)
                      .  . .. ...+++.+++.  +.++...          .+.|..+|.. ++...............++.+++ .++++.+
T Consensus       227 ~--~-~g-P~gi~~d~~G~--l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v  298 (322)
T 2fp8_A          227 K--I-PN-PGNIKRNADGH--FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYI  298 (322)
T ss_dssp             E--C-SS-EEEEEECTTSC--EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEE
T ss_pred             e--C-CC-CCCeEECCCCC--EEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEE
Confidence            1  1 22 67789999884  4444333          4668888764 33222222211111234666776 4666666


Q ss_pred             EeccCCcEEEEecC
Q 022590          279 SCCEDGAIWRWDAI  292 (294)
Q Consensus       279 s~~~dg~i~vw~~~  292 (294)
                      +...++.|.++++.
T Consensus       299 ~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          299 GTLFHGSVGILVYD  312 (322)
T ss_dssp             ECSSCSEEEEEEC-
T ss_pred             eecCCCceEEEecc
Confidence            66678889998875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.92  E-value=8.5e-06  Score=63.91  Aligned_cols=223  Identities=5%  Similarity=-0.150  Sum_probs=131.3

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  104 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  104 (294)
                      +|+.+.. ..|+..++........+. ....+..++|.+.++.++++-...+.|..+++..+.....+.   ........
T Consensus        89 ~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~---~~~~~p~g  163 (386)
T 3v65_B           89 VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS---TGLESPGG  163 (386)
T ss_dssp             EEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC---SSCSCCCC
T ss_pred             eeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe---CCCCCccE
Confidence            4444443 568888887655444333 334578999998456666666677889999987665433333   12234678


Q ss_pred             EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cc-eEEEe
Q 022590          105 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSK  181 (294)
Q Consensus       105 l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~  181 (294)
                      +++.+.++.++++-...+.|.+.++....                       ..............++++  +. ++++-
T Consensus       164 lavd~~~g~lY~~d~~~~~I~~~~~dg~~-----------------------~~~l~~~~l~~P~giavdp~~g~ly~td  220 (386)
T 3v65_B          164 LAVDWVHDKLYWTDSGTSRIEVANLDGAH-----------------------RKVLLWQSLEKPRAIALHPMEGTIYWTD  220 (386)
T ss_dssp             EEEETTTTEEEEEETTTTEEEECBTTSCS-----------------------CEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCeEEEEcCCCCeEEEEeCCCCc-----------------------eEEeecCCCCCCcEEEEEcCCCeEEEec
Confidence            88987566666766667788888776421                       111111122334555554  33 34443


Q ss_pred             eCC-CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccc
Q 022590          182 SVD-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ  260 (294)
Q Consensus       182 ~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  260 (294)
                      ... +.|..+++.....         .............++++|++. .+.++-...+.|..+|+..........    .
T Consensus       221 ~~~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGlavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~----~  286 (386)
T 3v65_B          221 WGNTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHVIERANLDGSHRKAVIS----Q  286 (386)
T ss_dssp             CSSSCEEEEEETTSCSC---------EEEECSSCSCEEEEEEEGGGT-EEEEEETTTTEEEEECTTSCSCEEEEC----S
T ss_pred             cCCCCEEEEEeCCCCCc---------EEEEECCCCCeeeEEEeCCCC-EEEEEECCCCEEEEEeCCCCeeEEEEE----C
Confidence            344 6788888764321         111112234577899998764 455555667889999987643222221    1


Q ss_pred             cCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          261 SKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       261 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      .......+++ .++.++++-...+.|..++
T Consensus       287 ~~~~P~giav-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          287 GLPHPFAITV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             SCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence            1234577888 4455566666677787776

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.91  E-value=2e-05  Score=68.07  Aligned_cols=248  Identities=9%  Similarity=0.050  Sum_probs=145.8

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc-------cCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-------HGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      ...|.++...  ++|.  |..|+.++-+..||..+++.......       ....|.++...+ ++.+.+ |+.+| |.+
T Consensus       214 ~~~i~~i~~d--~~g~--lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gt~~G-l~~  286 (795)
T 4a2l_A          214 TKQIQAILQQ--SPTR--IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDS-QNRLWI-GTFND-LNI  286 (795)
T ss_dssp             CCCEEEEEEE--ETTE--EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECT-TSCEEE-EESSC-EEE
T ss_pred             CCeeEEEEEc--CCCC--EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcC-CCCEEE-EeCCh-hhe
Confidence            3456676664  6675  55555554588899876543322111       235699999887 665444 45554 888


Q ss_pred             EEcCCCceEEEeecc----CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           81 WNVQTGICILIFAGA----GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        81 wd~~~~~~~~~~~~~----~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      ||..+++........    .-....|.++...+ ++. |-.|+.++-|..++........   +.  ..+          
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~-lWigt~~~Gl~~~~~~~~~~~~---~~--~~~----------  349 (795)
T 4a2l_A          287 YHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGG-MWLGTYFGGLNYYHPIRNRFKN---IR--NIP----------  349 (795)
T ss_dssp             EETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSC-EEEEESSSCEEEECGGGGSSEE---EC--CCT----------
T ss_pred             EcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcC-EEEEECCCCeEEeCCCcccceE---Ec--CCC----------
Confidence            998776544322110    01235699999987 665 6667777789999876521100   00  000          


Q ss_pred             ceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee------ecCCCCeeEEEEcccCCcc
Q 022590          157 PVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY------PVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~~~  229 (294)
                       . ........|.++..+ ...|..|+.++.|..||..++..       ......      ......|.++...+++  .
T Consensus       350 -~-~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~  418 (795)
T 4a2l_A          350 -Y-KNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRF-------TSYTLQEDESARGIGSNNIKAVYVDEKK--S  418 (795)
T ss_dssp             -T-SSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCE-------EEECCC------CCSCSCEEEEEEETTT--T
T ss_pred             -C-CCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcE-------EEEecCCCCcccCCCCccEEEEEEcCCC--C
Confidence             0 001123457777666 44677788888899999876531       011000      1123567788777666  4


Q ss_pred             eEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          230 AAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       230 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .|..|+.++-|..||..+++...............|.++...++|++.+... +| |.+||.+
T Consensus       419 ~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~  479 (795)
T 4a2l_A          419 LVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPE  479 (795)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETT
T ss_pred             EEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCC
Confidence            3677777778999998877532221111112235799999999888666554 54 7778764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.91  E-value=2.2e-06  Score=72.13  Aligned_cols=108  Identities=14%  Similarity=0.069  Sum_probs=68.2

Q ss_pred             C-CCceEEEEeecCC-----------eEEEEEcCCccccc--eec-ccCcceEEEEeCCCCCceEEEeeC-CCcEEEEEc
Q 022590           20 V-DGIPFLVAGGING-----------IIRVIDVSNEKLHK--SFV-GHGDSINEIRTQPLKPSLVVSASK-DESVRLWNV   83 (294)
Q Consensus        20 ~-~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~--~~~-~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~vwd~   83 (294)
                      + +|+ +++.|+.+.           .+.+||..+++...  .+. .+.....++++.+ ++.+++.|+. +..+.+||.
T Consensus       195 ~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~~yd~  272 (656)
T 1k3i_A          195 PTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDS  272 (656)
T ss_dssp             TTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEG
T ss_pred             ecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceEEecC
Confidence            6 777 788876543           68899998876432  221 1233344567777 7888888884 568999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-cC-----CcEEEEecccc
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MD-----NTVKIWSMKEF  132 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~d-----g~i~~wd~~~~  132 (294)
                      .+++-... ..+. ....-.+++..+ ++.+++.|+ .+     ..+.+||..+.
T Consensus       273 ~t~~W~~~-~~~~-~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          273 SSDSWIPG-PDMQ-VARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             GGTEEEEC-CCCS-SCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cCCceeEC-CCCC-ccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCC
Confidence            87654332 2111 111123455556 778888888 34     56899998763

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.88  E-value=1.6e-06  Score=71.54  Aligned_cols=67  Identities=15%  Similarity=0.125  Sum_probs=45.9

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccC--c--ceEE-EEeCCCCCceEEEeeC------CCcEEEEEcCCCceEEEee
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHG--D--SINE-IRTQPLKPSLVVSASK------DESVRLWNVQTGICILIFA   93 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~--~--~v~~-~~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~   93 (294)
                      .++.++.|+.|..+|..+++.+.......  .  .+.+ -...  ++ .++.++.      ++.|..+|..+|+.+..+.
T Consensus       117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~--~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE--CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            68888889999999999998876654221  0  1211 1111  33 4455544      7999999999999988776


Q ss_pred             c
Q 022590           94 G   94 (294)
Q Consensus        94 ~   94 (294)
                      .
T Consensus       194 ~  194 (571)
T 2ad6_A          194 A  194 (571)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.87  E-value=6.9e-06  Score=59.87  Aligned_cols=220  Identities=11%  Similarity=0.076  Sum_probs=134.0

Q ss_pred             eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEE
Q 022590           48 SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW  127 (294)
Q Consensus        48 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~w  127 (294)
                      .+.+-.+.+..++|.|+++.++++...++.|...|.. ++.+..+..  +-....-.|++.+ ++.++++.-.++.+.++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l--~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~   96 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL--DFVKDLETIEYIG-DNQFVISDERDYAIYVI   96 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC--SSCSSEEEEEECS-TTEEEEEETTTTEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec--CCCCChHHeEEeC-CCEEEEEECCCCcEEEE
Confidence            3445556799999999555566667888999999997 888877753  1224678899987 77766766677889998


Q ss_pred             eccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCce
Q 022590          128 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD  205 (294)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  205 (294)
                      ++........  ...           ...+. ...........++|+  ++.|+++.......+|.++....   .....
T Consensus        97 ~v~~~~~i~~--~~~-----------~~~~~-~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~---~~~l~  159 (255)
T 3qqz_A           97 SLTPNSEVKI--LKK-----------IKIPL-QESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLS---SNELH  159 (255)
T ss_dssp             EECTTCCEEE--EEE-----------EECCC-SSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTC---SSCCE
T ss_pred             EcCCCCeeee--eee-----------ecccc-ccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccccc---CCcee
Confidence            8876321000  000           00000 011234556788887  54666666655555555541100   00111


Q ss_pred             eeee----eecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccccc-----CCCeEEEEEccCCCE
Q 022590          206 ILQK----YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS-----KSPIRQTAMSYDGST  276 (294)
Q Consensus       206 ~~~~----~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~  276 (294)
                      ....    -......+..+++.|... .+++.......+..+|.+.. .+....+....+     ...-..|+|.++|++
T Consensus       160 i~~~~~~~~~~~~~d~S~l~~dp~tg-~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l  237 (255)
T 3qqz_A          160 ISKDKALQRQFTLDDVSGAEFNQQKN-TLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI  237 (255)
T ss_dssp             EEECHHHHHTCCSSCCCEEEEETTTT-EEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred             eecchhhccccccCCceeEEEcCCCC-eEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCE
Confidence            1110    011234577899999875 67788888899999997754 444444442111     236789999999985


Q ss_pred             EEEeccCCcEEEEec
Q 022590          277 ILSCCEDGAIWRWDA  291 (294)
Q Consensus       277 l~s~~~dg~i~vw~~  291 (294)
                      .++ ++-+.++++.-
T Consensus       238 yIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          238 YIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEE-ETTTEEEEEEC
T ss_pred             EEE-cCCceEEEEEe
Confidence            555 67676666643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.86  E-value=1.1e-05  Score=69.57  Aligned_cols=248  Identities=10%  Similarity=0.037  Sum_probs=143.0

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee-cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      |.++...  ++|.  |..|+.++-|..|+..+++..... ..+...|.++...+ ++.+.+ |+.++-+..||..+++..
T Consensus       175 i~~i~~d--~~g~--lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lwi-gt~~~Gl~~~~~~~~~~~  248 (795)
T 4a2l_A          175 IASTLYR--QGDQ--IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQS-PTRIWV-ATEGAGLFLINPKTKEIK  248 (795)
T ss_dssp             CEEEEEE--ETTE--EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEE-TTEEEE-EEBSSCEEEEETTTTEEE
T ss_pred             eEEEEEC--CCCC--EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC-CCCEEE-EECCCCeEEEeCCCCeEE
Confidence            6776665  6675  555666555888998766543221 12346788888877 565554 444434888998776543


Q ss_pred             EEeecc----CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           90 LIFAGA----GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        90 ~~~~~~----~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ......    .-....|.++...+ ++. |..|+.+ -|.+||........   +  ...+           ........
T Consensus       249 ~~~~~~~~~~~l~~~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~---~--~~~~-----------~~~~~l~~  309 (795)
T 4a2l_A          249 NYLHSPSNPKSISSNYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFAS---Y--SSNP-----------VENGSLSQ  309 (795)
T ss_dssp             EECCCTTCTTSCSCSBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEEE---E--CCCT-----------TSTTSCSS
T ss_pred             EeecCCCCccccCCCeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEEE---E--ecCC-----------CCCCCCCC
Confidence            322110    01235699999887 665 4455555 58888876521100   0  0000           00001123


Q ss_pred             Cceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeee----eecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          166 NYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQK----YPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       166 ~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      ..|.++..+ ...+..|+.++.|..|+.......       ....    .......|.++...+++   .|-.|+.++-|
T Consensus       310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-------~~~~~~~~~~l~~~~V~~i~~d~~g---~lWiGt~~~Gl  379 (795)
T 4a2l_A          310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK-------NIRNIPYKNSLSDNVVSCIVEDKDK---NLWIGTNDGGL  379 (795)
T ss_dssp             SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE-------EECCCTTSSSCSCSSEEEEEECTTS---CEEEEESSSCE
T ss_pred             CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce-------EEcCCCCCCCCCCCeeEEEEECCCC---CEEEEECCCCe
Confidence            457777766 456777788888999987654310       1110    01123568888877776   36667777779


Q ss_pred             EEEeccCCCceeeeecc-c---cccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          241 FVWELQSSPPVLIARLS-H---AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~-~---~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ..|+..+.+........ .   ......|.+++..++|+.|..|+.++-|..||.++
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~  436 (795)
T 4a2l_A          380 NLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS  436 (795)
T ss_dssp             EEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred             EEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence            99998776422211100 0   11235799999999988455666666688887653

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.84  E-value=1.3e-05  Score=61.08  Aligned_cols=226  Identities=7%  Similarity=-0.108  Sum_probs=130.1

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC---ceEEEeeccCCCCCc
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG---ICILIFAGAGGHRNE  101 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~~  101 (294)
                      +|+.+.. ..|+..++.+.+....+. ....+..++|++.++.++++-...+.|..+++...   .....+..  ..-..
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~--~~~~~   78 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQA   78 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSC
T ss_pred             EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe--CCCCC
Confidence            4444444 468999998776555444 34567899999845556666666789999998751   22222221  12235


Q ss_pred             eeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEE
Q 022590          102 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFIL  179 (294)
Q Consensus       102 v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~  179 (294)
                      ...+++.+.+++++++-...+.|.+.++....                       ..............++.+  +..|+
T Consensus        79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-----------------------~~~~~~~~~~~P~~iavdp~~g~ly  135 (316)
T 1ijq_A           79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-----------------------RKTLFRENGSKPRAIVVDPVHGFMY  135 (316)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-----------------------EEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             cCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-----------------------eEEEEECCCCCcceEEeCCCCCEEE
Confidence            67899987466666666778899999876521                       011111112234455554  34443


Q ss_pred             Eee-CC-CeEEEecCCCCCCCCCCCCceeeeee-ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeec
Q 022590          180 SKS-VD-NEIVLWEPKMKEQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL  256 (294)
Q Consensus       180 ~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  256 (294)
                      .+. .. +.|...++....          ...+ ...-.....+++++++. .+.++-...+.|..+|+...........
T Consensus       136 ~~d~~~~~~I~~~~~dG~~----------~~~~~~~~~~~P~gla~d~~~~-~lY~~D~~~~~I~~~d~dg~~~~~~~~~  204 (316)
T 1ijq_A          136 WTDWGTPAKIKKGGLNGVD----------IYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILED  204 (316)
T ss_dssp             EEECSSSCEEEEEETTSCC----------EEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred             EEccCCCCeEEEEcCCCCC----------eEEEEECCCCCceEEEEeccCC-EEEEEECCCCeEEEEecCCCceEEEeec
Confidence            333 33 678888775321          1111 12234577899998764 4455556678999999976543222221


Q ss_pred             cccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          257 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       257 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      .  ........+++. .+.++++-...+.|..++.
T Consensus       205 ~--~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          205 E--KRLAHPFSLAVF-EDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             T--TTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             C--CccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence            1  112335677875 4555566666778887775

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.78  E-value=2.5e-05  Score=60.35  Aligned_cols=223  Identities=6%  Similarity=-0.139  Sum_probs=130.8

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLS  104 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~  104 (294)
                      +|+.+.. ..|+..+++.......+. ....+..++|++.++.++++-...+.|..+++..+.....+.   ........
T Consensus        46 ~ll~~~~-~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~---~~~~~p~g  120 (349)
T 3v64_C           46 VLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS---TGLESPGG  120 (349)
T ss_dssp             EEEEECB-SCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSCCCE
T ss_pred             eeEeecc-cceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe---CCCCCccE
Confidence            4444433 458888876554433333 334578999998456666666677889999987665443333   12345678


Q ss_pred             EEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEe
Q 022590          105 VDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSK  181 (294)
Q Consensus       105 l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~  181 (294)
                      +++.+.++.++++-...+.|.+.++....                       ..............++++   +.++++-
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~-----------------------~~~l~~~~l~~P~~iavdp~~g~ly~td  177 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAH-----------------------RKVLLWQSLEKPRAIALHPMEGTIYWTD  177 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCS-----------------------CEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCc-----------------------eEEEEeCCCCCcceEEEecCcCeEEEec
Confidence            99987566766776777889999887521                       111111122334555555   3344444


Q ss_pred             eCC-CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccc
Q 022590          182 SVD-NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ  260 (294)
Q Consensus       182 ~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  260 (294)
                      ... +.|..+++.....         .............++++|++. .+.++-...+.|..+++..........    .
T Consensus       178 ~~~~~~I~r~~~dG~~~---------~~~~~~~~~~PnGla~d~~~~-~lY~aD~~~~~I~~~~~dG~~~~~~~~----~  243 (349)
T 3v64_C          178 WGNTPRIEASSMDGSGR---------RIIADTHLFWPNGLTIDYAGR-RMYWVDAKHHVIERANLDGSHRKAVIS----Q  243 (349)
T ss_dssp             CSSSCEEEEEETTSCSC---------EESCCSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEC----S
T ss_pred             cCCCCEEEEEeCCCCCc---------EEEEECCCCCcceEEEeCCCC-EEEEEECCCCEEEEEeCCCCceEEEEe----C
Confidence            444 7788888764321         111111234567899998764 445555667889999987653222221    1


Q ss_pred             cCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          261 SKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       261 ~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      .......+++ .++.+.++-...+.|...+
T Consensus       244 ~~~~P~giav-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          244 GLPHPFAITV-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             SCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence            1234567777 3455555555667777766

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.77  E-value=9.6e-06  Score=69.38  Aligned_cols=110  Identities=10%  Similarity=0.039  Sum_probs=68.1

Q ss_pred             EEEeec-CCCceEEEEeec-CC----eEEEEEcCCc-cccc-eecccCcceEEEEeCCCCCceEEEeeCC-----CcEEE
Q 022590           14 VSWACN-VDGIPFLVAGGI-NG----IIRVIDVSNE-KLHK-SFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRL   80 (294)
Q Consensus        14 ~~~~~~-~~~~~~l~~~~~-dg----~i~iw~~~~~-~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~v   80 (294)
                      -.+.++ |||+ +||.+.. +|    .|+++|+.++ +.+. .+.   .....++|+| +++.|+....|     ..|..
T Consensus       177 ~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          177 MEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEEE
T ss_pred             eeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEEE
Confidence            345568 8998 6664433 33    5999999988 6322 121   2245789999 76666655554     25778


Q ss_pred             EEcCCCce--EEEeeccCCCCCceeEEEEecCCCceEEeeec---CCcEEEEeccc
Q 022590           81 WNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---DNTVKIWSMKE  131 (294)
Q Consensus        81 wd~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~---dg~i~~wd~~~  131 (294)
                      +++.+++.  ...+..  ........+.|+| ++.+|+..+.   ...|.++|+..
T Consensus       252 ~~lgt~~~~~~lv~~~--~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEE--HNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EETTSCGGGCEEEEEC--CCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSS
T ss_pred             EECCCCchhcEEEEec--CCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCC
Confidence            88877642  233331  1233466889999 7776665542   34577778765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.76  E-value=3.8e-06  Score=69.45  Aligned_cols=66  Identities=11%  Similarity=0.096  Sum_probs=45.3

Q ss_pred             EEEeecCCeEEEEEcCCccccceecccCc----ceEE-EEeCCCCCceEEEee------CCCcEEEEEcCCCceEEEeec
Q 022590           26 LVAGGINGIIRVIDVSNEKLHKSFVGHGD----SINE-IRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAG   94 (294)
Q Consensus        26 l~~~~~dg~i~iw~~~~~~~~~~~~~h~~----~v~~-~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~   94 (294)
                      |+.++.|+.|..+|..+|+.+........    .+++ -...  ++ .++.++      .+|.|.-+|..+|+.+..+..
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~  200 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence            88888999999999999988766543210    1211 1111  33 444444      389999999999999887764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.72  E-value=4.6e-05  Score=65.61  Aligned_cols=242  Identities=10%  Similarity=-0.028  Sum_probs=139.9

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec----------ccCcceEEEEeCCCCCceEEEeeCCCc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV----------GHGDSINEIRTQPLKPSLVVSASKDES   77 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~l~s~~~dg~   77 (294)
                      ...|.++...  ++|.  |-.|+.++-|..++..+..... +.          .....|.++...+ ++. |..|+.++-
T Consensus       312 ~~~v~~i~~D--~~g~--lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt~~~G  384 (781)
T 3v9f_A          312 NASARYIFQD--SFNN--IWIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGTDGGG  384 (781)
T ss_dssp             SSCEEEEEEC--SSCC--EEEEEBSSCEEEECSSCCSCEE-EC----CCCSSCCSSSCEEEEEECT-TSC-EEEEEBSSC
T ss_pred             CCeEEEEEEe--CCCC--EEEEecCCeEEEeCCCCCccee-eccCccccccCCCCCcceEEEEEcC-CCC-EEEEeCCCc
Confidence            3567777765  7776  7777777778888876554321 21          1235689998877 555 455665566


Q ss_pred             EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      |..++..++...............|.++...+ ++. |..|+.++-+..+|..+.....                     
T Consensus       385 l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~---------------------  441 (781)
T 3v9f_A          385 INVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGN-LWFGTYLGNISYYNTRLKKFQI---------------------  441 (781)
T ss_dssp             EEEEETTEEEEECC-----CCCSBEEEEEECT-TSC-EEEEETTEEEEEECSSSCEEEE---------------------
T ss_pred             EEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCC-EEEEeccCCEEEEcCCCCcEEE---------------------
Confidence            88888865433221110012346789998876 555 5557766778888876521100                     


Q ss_pred             eEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee---cCCCCeeEEEEcccCCcceEEE
Q 022590          158 VFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      ..........|.++..+ ...|..|+. +.|..||..+++..       ......   .....+.++...+++   .|..
T Consensus       442 ~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~i~~d~~g---~lWi  510 (781)
T 3v9f_A          442 IELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVI-------HHYDTSNSQLLENFVRSIAQDSEG---RFWI  510 (781)
T ss_dssp             CCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCC-------EEECTTTSSCSCSCEEEEEECTTC---CEEE
T ss_pred             eccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEE-------ecccCcccccccceeEEEEEcCCC---CEEE
Confidence            00001123456666665 445666666 66889998765421       111000   113567888877776   3455


Q ss_pred             EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |+..+-+..||..+.+.... ..........|.++...++|.+.++.. +|.|..||.+
T Consensus       511 gt~~~Gl~~~~~~~~~~~~~-~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~  567 (781)
T 3v9f_A          511 GTFGGGVGIYTPDMQLVRKF-NQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSAR  567 (781)
T ss_dssp             EESSSCEEEECTTCCEEEEE-CTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTT
T ss_pred             EEcCCCEEEEeCCCCeEEEc-cCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCC
Confidence            55544477788776532111 111112245789999999998766554 6654777754

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.72  E-value=4.5e-05  Score=59.81  Aligned_cols=200  Identities=8%  Similarity=-0.071  Sum_probs=118.7

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      ....++|.  +.+..++++-...+.|+.++++.......+.........+++.+.++.++++-...+.|.+.++......
T Consensus       117 ~~~gl~~d--~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          117 NAIALDFH--HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             ccEEEEEe--cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            45667776  5444356666677889999987655433333233455778888745666666666788998888654433


Q ss_pred             EEeeccCCCCCceeEEEEecCCCceEEeeecC-CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           90 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        90 ~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      ..+.   ..-.....|++.|.++.++++-... +.|..+++....                       ........-...
T Consensus       195 ~l~~---~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-----------------------~~~~~~~~~~~P  248 (386)
T 3v65_B          195 VLLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-----------------------RRIIADTHLFWP  248 (386)
T ss_dssp             EEEC---SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-----------------------CEEEECSSCSCE
T ss_pred             Eeec---CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-----------------------cEEEEECCCCCe
Confidence            3333   2335679999998566655555444 678877776411                       111111122334


Q ss_pred             eeccee--c-ceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          169 DCNRWL--G-DFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       169 ~~~~~~--~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      ..++++  + .+.++-...+.|..+|+.....         .............+++. .+  .++.+-...+.|..++.
T Consensus       249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~---------~~~~~~~~~~P~giav~-~~--~ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          249 NGLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVISQGLPHPFAITVF-ED--SLYWTDWHTKSINSANK  316 (386)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEECTTSCSC---------EEEECSSCSSEEEEEEE-TT--EEEEEETTTTEEEEEET
T ss_pred             eeEEEeCCCCEEEEEECCCCEEEEEeCCCCee---------EEEEECCCCCceEEEEE-CC--EEEEeeCCCCeEEEEEC
Confidence            567775  3 4445555677899999864321         11112223456677773 33  46666677888988885


Q ss_pred             cCCC
Q 022590          246 QSSP  249 (294)
Q Consensus       246 ~~~~  249 (294)
                      .+++
T Consensus       317 ~~G~  320 (386)
T 3v65_B          317 FTGK  320 (386)
T ss_dssp             TTCC
T ss_pred             CCCc
Confidence            5554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.68  E-value=5.9e-05  Score=60.00  Aligned_cols=248  Identities=10%  Similarity=-0.011  Sum_probs=129.7

Q ss_pred             eeEEEEEeecC-CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC-CC----cEEEEEc
Q 022590           10 SFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK-DE----SVRLWNV   83 (294)
Q Consensus        10 ~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-dg----~i~vwd~   83 (294)
                      .-..++++  | ++. .|..+...+.|+.+|+++++..... ........|+|++ +++.|+.+.. ++    .+.+.+.
T Consensus       138 ~P~~lavd--p~~~g-~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFD--PKNHN-HLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEE--TTEEE-EEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEEC--CCCCC-eEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC
Confidence            34567776  6 344 4555555588999998776544333 3445688999999 7774554443 22    2333333


Q ss_pred             CCCceE--EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           84 QTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        84 ~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                       .+...  ..+.    .......++++|.++.++++-..++.|..++.......                     .+...
T Consensus       213 -~g~~~~~~~l~----~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~---------------------~~~~~  266 (430)
T 3tc9_A          213 -ESGFKVITELT----KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT---------------------PLFTI  266 (430)
T ss_dssp             -GGTSCSEEEEE----ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE---------------------EEEEC
T ss_pred             -CCceeeeeeec----cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE---------------------EEEEc
Confidence             33222  2222    12335778899866676666667788999998752110                     01111


Q ss_pred             ecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee------------ecCCCCee-EEEEcc-
Q 022590          162 SVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY------------PVPECDIW-FIKFSC-  224 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~~i~-~~~~~~-  224 (294)
                       ........++++  ++ ++++-...+.|..++.........  ....+...            ...-.... .++..+ 
T Consensus       267 -~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~  343 (430)
T 3tc9_A          267 -QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLT--TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNP  343 (430)
T ss_dssp             -SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC--CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECG
T ss_pred             -CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccccc--ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccc
Confidence             111234456665  66 444555678899887653210000  00000000            00001122 344432 


Q ss_pred             -----cCCcceEEEEcCCCeEEEEeccCCCceeeeec-----c--------ccccCCCeEEEEEccC-CCEEEEeccCCc
Q 022590          225 -----DFHYNAAAIGNREGKIFVWELQSSPPVLIARL-----S--------HAQSKSPIRQTAMSYD-GSTILSCCEDGA  285 (294)
Q Consensus       225 -----~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~--------~~~~~~~v~~~~~s~~-~~~l~s~~~dg~  285 (294)
                           +..+.+.++-...+.|+.++. .++.....-.     .        ....-.....++++|+ +.++++-..+..
T Consensus       344 ~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~r  422 (430)
T 3tc9_A          344 AYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRR  422 (430)
T ss_dssp             GGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTE
T ss_pred             cccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCe
Confidence                 122245555556778888873 3321111110     0        0001125789999994 666666667788


Q ss_pred             EEEEecC
Q 022590          286 IWRWDAI  292 (294)
Q Consensus       286 i~vw~~~  292 (294)
                      |+.++++
T Consensus       423 Ir~i~~e  429 (430)
T 3tc9_A          423 IRKIGYE  429 (430)
T ss_dssp             EEEEEEC
T ss_pred             EEEEccC
Confidence            9888765

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.67  E-value=3.5e-05  Score=56.19  Aligned_cols=208  Identities=5%  Similarity=0.045  Sum_probs=126.1

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc-cCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      -.+.+..++|.  |++..++++...++.|...|.. ++..+.+.- -....-.|++.+ ++.++++.-.++.+.++++..
T Consensus        25 ~~~~lSGla~~--~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~  100 (255)
T 3qqz_A           25 ITNNISSLTWS--AQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTP  100 (255)
T ss_dssp             CCSCEEEEEEE--TTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECT
T ss_pred             cccCcceeEEe--CCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCC
Confidence            34579999998  7665477778889999999987 777776642 124577888888 777767766778899998865


Q ss_pred             Cce---EEEeec---cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           86 GIC---ILIFAG---AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        86 ~~~---~~~~~~---~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      ...   +.....   ..........|+|+| .++.|.++.......+|.++.....  ..+..           ...+..
T Consensus       101 ~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~-~~~~L~va~E~~p~~i~~~~g~~~~--~~l~i-----------~~~~~~  166 (255)
T 3qqz_A          101 NSEVKILKKIKIPLQESPTNCGFEGLAYSR-QDHTFWFFKEKNPIEVYKVNGLLSS--NELHI-----------SKDKAL  166 (255)
T ss_dssp             TCCEEEEEEEECCCSSCCCSSCCEEEEEET-TTTEEEEEEESSSEEEEEEESTTCS--SCCEE-----------EECHHH
T ss_pred             CCeeeeeeeeccccccccccCCcceEEEeC-CCCEEEEEECcCCceEEEEcccccC--Cceee-----------ecchhh
Confidence            542   222221   012345679999999 5555655655555566665521000  00000           000000


Q ss_pred             EeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCC---------CCeeEEEEcccCC
Q 022590          160 IASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE---------CDIWFIKFSCDFH  227 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~  227 (294)
                      ....+...+.+++++   +.+++.....+.+..+|....          .+..+....         .....++|.++|.
T Consensus       167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~----------~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE----------VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC----------EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC----------EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence            001122345677776   667777788888999997643          233333321         3567899999983


Q ss_pred             cceEEEEcCCCeEEEEec
Q 022590          228 YNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       228 ~~~l~~~~~dg~i~i~d~  245 (294)
                         |+..++.+.++.|.-
T Consensus       237 ---lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          237 ---IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             ---EEEEETTTEEEEEEC
T ss_pred             ---EEEEcCCceEEEEEe
Confidence               444567776666643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.63  E-value=2.8e-06  Score=71.56  Aligned_cols=226  Identities=8%  Similarity=-0.074  Sum_probs=117.2

Q ss_pred             CCCceEEEEee-cCCeEEEEEcCCccccceecccCc-ceEEEEeCCCCCceEEEee-CC-----CcEEEEEcCCCceEEE
Q 022590           20 VDGIPFLVAGG-INGIIRVIDVSNEKLHKSFVGHGD-SINEIRTQPLKPSLVVSAS-KD-----ESVRLWNVQTGICILI   91 (294)
Q Consensus        20 ~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~-~d-----g~i~vwd~~~~~~~~~   91 (294)
                      ++|+ +++.|+ .+..+.+||..+++-...-..+.. .-.+++..+ ++++++.|+ .+     ..+.+||..+++-...
T Consensus       252 ~~g~-lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          252 GNGQ-IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             TTSC-EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             CCCC-EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            7888 888887 456899999877643222111111 123455556 778888888 44     5689999987653332


Q ss_pred             e----eccCCCCCceeEEEEecCCCceEEeeecCC---------cEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           92 F----AGAGGHRNEVLSVDFHPSDIYRIASCGMDN---------TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        92 ~----~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg---------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      -    .... ....  ...+.. ++..++.|+.+|         .+..||.......                    .+.
T Consensus       330 ~~~~~~p~~-~~~~--~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~--------------------~~~  385 (656)
T 1k3i_A          330 PNAKVNPML-TADK--QGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV--------------------KSA  385 (656)
T ss_dssp             TTSCSGGGC-CCCT--TGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE--------------------EEE
T ss_pred             CCccccccc-cccc--cceeec-CCceEEEECCCCcEEEecCccceeeeecCCccee--------------------ecC
Confidence            0    0000 0000  011122 445555555554         4566776652110                    000


Q ss_pred             EEeec------CCCceeecc---eecceEEEeeCCC-----------eEEEecCCCCCCCCCCCCceeeeeeecCCCC-e
Q 022590          159 FIASV------HSNYVDCNR---WLGDFILSKSVDN-----------EIVLWEPKMKEQSPGEGTADILQKYPVPECD-I  217 (294)
Q Consensus       159 ~~~~~------~~~~i~~~~---~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-i  217 (294)
                      .....      ....-.++.   ..+.+++.|+.++           .+.+||..+..-       ..+..-..+... -
T Consensus       386 ~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W-------~~~~~~~mp~~R~~  458 (656)
T 1k3i_A          386 GKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN-------TVFASNGLYFARTF  458 (656)
T ss_dssp             EECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE-------EEECTTCCSSCCBS
T ss_pred             CccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe-------eEEccCCCCCCccc
Confidence            00000      011112222   2377778877532           678888876431       111100111222 2


Q ss_pred             eEEEEcccCCcceEEEEcCC-----------CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc
Q 022590          218 WFIKFSCDFHYNAAAIGNRE-----------GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       218 ~~~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                      ..+...|++  .+++.|+.+           ..+.+||..+.+........  ..+..-....+.|+|++++.|+.
T Consensus       459 ~~~~~l~~g--~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~--~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          459 HTSVVLPDG--STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS--IVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CEEEECTTS--CEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS--SCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCeEECCCC--CEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCC--CccccccHhhcCCCcEEEecCCC
Confidence            344566777  577777754           56899999886533322222  22223345566799999999885

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.63  E-value=6.6e-05  Score=56.87  Aligned_cols=203  Identities=8%  Similarity=-0.048  Sum_probs=110.1

Q ss_pred             cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC--cEEEEeccc
Q 022590           54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKE  131 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg--~i~~wd~~~  131 (294)
                      .....++|++ +++++++-..++.|..||... +....+.    ....+..+++.+ +++++++.....  .|..+|..+
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g-~~~~~~~----~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDG-NQQIHAT----VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTTC-CEEEEEE----CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEECCCC-ceEEEEe----CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCC
Confidence            4567899999 777777776789999999864 4443333    345789999999 777555543322  355566554


Q ss_pred             cccccccceeecCCCCCCCCceeeeceEEeecCCCceeecc-eecc-eEEEeeCCCeEEEecCCCCCCCCC--CCCceee
Q 022590          132 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNR-WLGD-FILSKSVDNEIVLWEPKMKEQSPG--EGTADIL  207 (294)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~-~l~~~~~d~~i~iwd~~~~~~~~~--~~~~~~~  207 (294)
                      +....                     +.... .......+. +.+. .+++-..++.|..+|...+.....  ...... 
T Consensus       105 g~~~~---------------------~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~-  161 (306)
T 2p4o_A          105 GTVET---------------------LLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR-  161 (306)
T ss_dssp             SCEEE---------------------EEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC-
T ss_pred             CeEEE---------------------EEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc-
Confidence            22100                     00000 000111111 2233 344444578888888764310000  000000 


Q ss_pred             eeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC-CCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcE
Q 022590          208 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS-SPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI  286 (294)
Q Consensus       208 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  286 (294)
                      ......-.....+  +++++ .++++-...+.|..|++.. ++......+.   .......++++++|++.++....+.|
T Consensus       162 ~~~~~~~~~pngi--s~dg~-~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~---~~~~P~gi~vd~dG~l~va~~~~~~V  235 (306)
T 2p4o_A          162 SNSESVFPAANGL--KRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHIYNSV  235 (306)
T ss_dssp             SSTTCCSCSEEEE--EEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBTTCCE
T ss_pred             ccccCCCCcCCCc--CcCCC-EEEEEeCCCCEEEEEEeCCCCCCCccEEEe---ccCCCCCeEECCCCCEEEEeCCCCeE
Confidence            0000011233445  77774 3556666788999999875 3211111111   01235678999999887777777888


Q ss_pred             EEEecC
Q 022590          287 WRWDAI  292 (294)
Q Consensus       287 ~vw~~~  292 (294)
                      .+++..
T Consensus       236 ~~~~~~  241 (306)
T 2p4o_A          236 VRIAPD  241 (306)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            888753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.62  E-value=7.9e-05  Score=57.54  Aligned_cols=199  Identities=8%  Similarity=-0.071  Sum_probs=117.8

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL   90 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~   90 (294)
                      ...++|.  +.+..++.+-...+.|..++++.......+.........+++.+.++.++++-...+.|.+.++.......
T Consensus        75 ~~~l~~d--~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           75 AIALDFH--HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             EEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             eEEEEEe--ccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            4677776  55442555656778899999876554333332334567888887456666666677899999986544333


Q ss_pred             EeeccCCCCCceeEEEEecCCCceEEeeecC-CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCcee
Q 022590           91 IFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  169 (294)
Q Consensus        91 ~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (294)
                      .+.   ..-.....|+++|.++.++++-... +.|...++.....                       .......-....
T Consensus       153 l~~---~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-----------------------~~~~~~~~~~Pn  206 (349)
T 3v64_C          153 LLW---QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-----------------------RIIADTHLFWPN  206 (349)
T ss_dssp             EEC---TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----------------------EESCCSSCSCEE
T ss_pred             EEe---CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-----------------------EEEEECCCCCcc
Confidence            332   2335679999999566666665555 7788887764110                       001111123345


Q ss_pred             eccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEecc
Q 022590          170 CNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ  246 (294)
Q Consensus       170 ~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  246 (294)
                      .++++  +. +.++-...+.|..+|+.....         .............+++. .+  .+..+-...+.|..++..
T Consensus       207 Gla~d~~~~~lY~aD~~~~~I~~~~~dG~~~---------~~~~~~~~~~P~giav~-~~--~ly~td~~~~~V~~~~~~  274 (349)
T 3v64_C          207 GLTIDYAGRRMYWVDAKHHVIERANLDGSHR---------KAVISQGLPHPFAITVF-ED--SLYWTDWHTKSINSANKF  274 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSC---------EEEECSSCSSEEEEEEE-TT--EEEEEETTTTEEEEEETT
T ss_pred             eEEEeCCCCEEEEEECCCCEEEEEeCCCCce---------EEEEeCCCCCceEEEEE-CC--EEEEecCCCCeEEEEEcc
Confidence            66665  34 444445567899999864321         11112223456677773 33  456666677888888854


Q ss_pred             CCC
Q 022590          247 SSP  249 (294)
Q Consensus       247 ~~~  249 (294)
                      +++
T Consensus       275 ~G~  277 (349)
T 3v64_C          275 TGK  277 (349)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.62  E-value=4.1e-05  Score=64.52  Aligned_cols=108  Identities=12%  Similarity=0.112  Sum_probs=72.6

Q ss_pred             EEEEeec------CCeEEEEEcCCccccceeccc-------------------------------CcceEEEEeCCCCCc
Q 022590           25 FLVAGGI------NGIIRVIDVSNEKLHKSFVGH-------------------------------GDSINEIRTQPLKPS   67 (294)
Q Consensus        25 ~l~~~~~------dg~i~iw~~~~~~~~~~~~~h-------------------------------~~~v~~~~~~~~~~~   67 (294)
                      .++++..      +|.|..+|..+++.+.++...                               ......+++.| ...
T Consensus       164 ~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~  242 (668)
T 1kv9_A          164 KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELD  242 (668)
T ss_dssp             EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTT
T ss_pred             EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCC
Confidence            4555543      589999999999887766421                               01112467777 666


Q ss_pred             eEEEeeCCC-------------------cEEEEEcCCCceEEEeeccCCCC-------CceeEEEEecCCCc---eEEee
Q 022590           68 LVVSASKDE-------------------SVRLWNVQTGICILIFAGAGGHR-------NEVLSVDFHPSDIY---RIASC  118 (294)
Q Consensus        68 ~l~s~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~~~-------~~v~~l~~~~~~~~---~l~~~  118 (294)
                      +++.++.++                   .|..+|..+|+.+..++.. .|.       .+.....+.. ++.   .++.+
T Consensus       243 ~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~-~~~~wd~~~~~~~~~~d~~~-~G~~~~~v~~~  320 (668)
T 1kv9_A          243 LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT-PGDSWDFTATQQITLAELNI-DGKPRKVLMQA  320 (668)
T ss_dssp             EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS-TTCCSCCCCCSCEEEEEEEE-TTEEEEEEEEC
T ss_pred             EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC-CCccccccCCCCcEEEEecc-CCcEEEEEEEE
Confidence            777777665                   3999999999998887742 122       2222223333 443   68899


Q ss_pred             ecCCcEEEEeccccccc
Q 022590          119 GMDNTVKIWSMKEFWTY  135 (294)
Q Consensus       119 ~~dg~i~~wd~~~~~~~  135 (294)
                      +.+|.++++|..+++..
T Consensus       321 ~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          321 PKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             CTTSEEEEEETTTCCEE
T ss_pred             CCCCEEEEEECCCCCEe
Confidence            99999999999886654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.61  E-value=0.0001  Score=58.05  Aligned_cols=226  Identities=7%  Similarity=-0.102  Sum_probs=130.8

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC----ceEEEeeccCCCCC
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG----ICILIFAGAGGHRN  100 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~  100 (294)
                      +|+.+. ...|+..+++.......+. ....+..|+|++.++.++++-...+.|..+++...    .....+.   ....
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~---~~~~  159 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQ  159 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC---SSCS
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe---CCCC
Confidence            455444 4689999987665444333 45678899999855556666566788988888652    2222222   2334


Q ss_pred             ceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceE
Q 022590          101 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI  178 (294)
Q Consensus       101 ~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  178 (294)
                      ....|++.+.+++++++-...+.|.+.++....                       ..............++.+  +..|
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-----------------------~~~l~~~~~~~P~~iavdp~~g~l  216 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-----------------------RKTLFRENGSKPRAIVVDPVHGFM  216 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-----------------------EEEEEECSSCCEEEEEEETTTTEE
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCCc-----------------------eEEEEeCCCCCcceEEEecccCeE
Confidence            678899987566666666777889988887521                       111111122334555554  3344


Q ss_pred             EEee--CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeec
Q 022590          179 LSKS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL  256 (294)
Q Consensus       179 ~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  256 (294)
                      +...  ..+.|...++.....         .......-.....+++++++. .+.++-...+.|..+|+...........
T Consensus       217 y~td~~~~~~I~~~~~dG~~~---------~~~~~~~l~~P~glavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~~  286 (400)
T 3p5b_L          217 YWTDWGTPAKIKKGGLNGVDI---------YSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILED  286 (400)
T ss_dssp             EEEECSSSCCEEEEETTSCSC---------EEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCCCEEEEEC
T ss_pred             EEEeCCCCCEEEEEeCCCCcc---------EEEEECCCCceEEEEEEeCCC-EEEEEECCCCEEEEEeCCCCccEEEEeC
Confidence            4333  236788888764321         111122234678899998774 3444455678899999976543333221


Q ss_pred             cccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          257 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       257 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      .  ........+++. .+.++.+-...+.|..+|.
T Consensus       287 ~--~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          287 E--KRLAHPFSLAVF-EDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             S--STTSSEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred             C--CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence            1  112334567763 3445556566677877763

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.60  E-value=0.00012  Score=60.42  Aligned_cols=82  Identities=9%  Similarity=0.045  Sum_probs=48.3

Q ss_pred             CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccC
Q 022590          183 VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK  262 (294)
Q Consensus       183 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  262 (294)
                      .++.|..||+.+++.         +-+.+... .+....+...+  ..++.++.||.++.+|.++++.+...........
T Consensus       442 ~~g~l~a~D~~tG~~---------~W~~~~~~-~~~~~~~~t~g--g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~  509 (571)
T 2ad6_A          442 EMGQIRAFDLTTGKA---------KWTKWEKF-AAWGGTLYTKG--GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG  509 (571)
T ss_dssp             CCEEEEEECTTTCCE---------EEEEEESS-CCCSBCEEETT--TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             CCCeEEEEECCCCCE---------EEEecCCC-CccceeEEECC--CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEe
Confidence            357899999987762         22222211 12222222233  3677799999999999999987666555432223


Q ss_pred             CCeEEEEEccCCCEEEE
Q 022590          263 SPIRQTAMSYDGSTILS  279 (294)
Q Consensus       263 ~~v~~~~~s~~~~~l~s  279 (294)
                      .++   .+..+|+.++.
T Consensus       510 ~p~---~~~~~G~~yv~  523 (571)
T 2ad6_A          510 SPM---TYSFKGKQYIG  523 (571)
T ss_dssp             CCE---EEEETTEEEEE
T ss_pred             eeE---EEEECCEEEEE
Confidence            333   35567764443

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.58  E-value=2.9e-05  Score=64.19  Aligned_cols=69  Identities=10%  Similarity=0.024  Sum_probs=45.3

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCc----ceE-EEEeCC--CCCc-eEEEee------CCCcEEEEEcCCCceEE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGD----SIN-EIRTQP--LKPS-LVVSAS------KDESVRLWNVQTGICIL   90 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~----~v~-~~~~~~--~~~~-~l~s~~------~dg~i~vwd~~~~~~~~   90 (294)
                      .++.++.|+.|.-+|..+|+.+........    .+. .-....  .+++ .++.++      .+|.|.-+|..+|+.+.
T Consensus       119 ~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W  198 (582)
T 1flg_A          119 KVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIW  198 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred             EEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEe
Confidence            688888999999999999998766543221    111 111111  0122 565654      37899999999999887


Q ss_pred             Eee
Q 022590           91 IFA   93 (294)
Q Consensus        91 ~~~   93 (294)
                      ...
T Consensus       199 ~~~  201 (582)
T 1flg_A          199 MRP  201 (582)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.58  E-value=2e-06  Score=69.77  Aligned_cols=222  Identities=11%  Similarity=0.047  Sum_probs=129.1

Q ss_pred             eeEEEEEeecCCCceEEEEee------------------cCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEE
Q 022590           10 SFYTVSWACNVDGIPFLVAGG------------------INGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVS   71 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~------------------~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s   71 (294)
                      ....+++.--|+++ ++++++                  .++.+.+.|.++.+...++.--. .-..++++| +++++++
T Consensus       135 ~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~v  211 (595)
T 1fwx_A          135 GIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFS  211 (595)
T ss_dssp             SEEEEEECCSSBCS-EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEE
T ss_pred             CCcceeeeecCCCc-EEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEE
Confidence            35566653128888 676663                  35689999999988887776433 456788999 7777777


Q ss_pred             eeCCC--------------------------------------cEEEEEcCC--Cce-EEEeeccCCCCCceeEEEEecC
Q 022590           72 ASKDE--------------------------------------SVRLWNVQT--GIC-ILIFAGAGGHRNEVLSVDFHPS  110 (294)
Q Consensus        72 ~~~dg--------------------------------------~i~vwd~~~--~~~-~~~~~~~~~~~~~v~~l~~~~~  110 (294)
                      .+.+.                                      .|.|.|..+  ++. +..+.    -.....++.++| 
T Consensus       212 t~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sP-  286 (595)
T 1fwx_A          212 TSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAP-  286 (595)
T ss_dssp             EESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE----EESSCCCEEECT-
T ss_pred             EecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe----cCCCceEEEEcC-
Confidence            77543                                      477777776  444 44444    223567899999 


Q ss_pred             CCc-eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeE
Q 022590          111 DIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEI  187 (294)
Q Consensus       111 ~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i  187 (294)
                      ++. .++++..+.+|.++|+.+........+..            ...+.....-......++|+  |...++...|+.|
T Consensus       287 DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~------------~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV  354 (595)
T 1fwx_A          287 DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP------------RSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQV  354 (595)
T ss_dssp             TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG------------GGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEE
T ss_pred             CCCEEEEeCCCCCeEEEEECcccccccccccCc------------ccceEEEcCCCCCcceEEECCCCeEEEEEecCCcE
Confidence            555 55556678899999999743211110000            01111111122334556665  6445566779999


Q ss_pred             EEecCCCCCC-CCCCCCceeeeeeecCCCCe-----eEEEEcccCCcceEEEEc--C-CCe----------EEEEeccCC
Q 022590          188 VLWEPKMKEQ-SPGEGTADILQKYPVPECDI-----WFIKFSCDFHYNAAAIGN--R-EGK----------IFVWELQSS  248 (294)
Q Consensus       188 ~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~~l~~~~--~-dg~----------i~i~d~~~~  248 (294)
                      .+||+..... .........+.++..+-.+-     ..+.++|+|+  +|++..  . |..          -.++|+..+
T Consensus       355 ~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk--~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~  432 (595)
T 1fwx_A          355 VKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND--WLVCLSKFSKDRFLNVGPLKPENDQLIDISGD  432 (595)
T ss_dssp             EEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS--EEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred             EEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC--EEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence            9999876210 00000233566666654321     1234578885  555543  2 332          188999666


Q ss_pred             Cceee
Q 022590          249 PPVLI  253 (294)
Q Consensus       249 ~~~~~  253 (294)
                      +...+
T Consensus       433 ~m~lv  437 (595)
T 1fwx_A          433 KMVLV  437 (595)
T ss_dssp             SCEEE
T ss_pred             cEEEE
Confidence            53333

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.58  E-value=0.00026  Score=61.04  Aligned_cols=241  Identities=12%  Similarity=-0.001  Sum_probs=141.4

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee--------------cccCcceEEEEeCCCCCceEEEeeC
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF--------------VGHGDSINEIRTQPLKPSLVVSASK   74 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--------------~~h~~~v~~~~~~~~~~~~l~s~~~   74 (294)
                      ..|.++...  ++|.  |..|+..+-|.+++..+++.....              ......|.++...+ ++. |-.|+.
T Consensus       258 ~~i~~i~~d--~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~-~g~-lWigt~  331 (781)
T 3v9f_A          258 SYIFSIKQL--KDNK--LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS-FNN-IWIGTW  331 (781)
T ss_dssp             CCEEEEEEC--TTSE--EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECS-SCC-EEEEEB
T ss_pred             ceEEEEEEC--CCCC--EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC-CCC-EEEEec
Confidence            457777764  6775  666776556888898765432211              11345789998887 555 555666


Q ss_pred             CCcEEEEEcCCCceEEEee------ccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590           75 DESVRLWNVQTGICILIFA------GAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        75 dg~i~vwd~~~~~~~~~~~------~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                      ++-|..++..++.......      ...-....|.++...+ ++. |..|+.++-|..||..+.....   +        
T Consensus       332 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~---~--------  398 (781)
T 3v9f_A          332 GGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGK-LWIGTDGGGINVFENGKRVAIY---N--------  398 (781)
T ss_dssp             SSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSC-EEEEEBSSCEEEEETTEEEEEC---C--------
T ss_pred             CCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCC-EEEEeCCCcEEEEECCCCeEEE---c--------
Confidence            6668888886654332211      0001235689998876 555 6667766778889877521100   0        


Q ss_pred             CCCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee---cCCCCeeEEEEcc
Q 022590          149 FPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP---VPECDIWFIKFSC  224 (294)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~  224 (294)
                               ..........|.++..+ ...|..|+.++.+..+|.++++          +..+.   .....|.++...+
T Consensus       399 ---------~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~----------~~~~~~~~~~~~~v~~i~~d~  459 (781)
T 3v9f_A          399 ---------KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKK----------FQIIELEKNELLDVRVFYEDK  459 (781)
T ss_dssp             --------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCE----------EEECCSTTTCCCCEEEEEECT
T ss_pred             ---------cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCc----------EEEeccCCCCCCeEEEEEECC
Confidence                     00001234567777765 5566677777789999987553          22221   2345677777777


Q ss_pred             cCCcceEEEEcCCCeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          225 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       225 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++   .|..|+. +.+..+|..+.+........ .......|.++...++|.+.+....+| |..||.+
T Consensus       460 ~g---~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~  523 (781)
T 3v9f_A          460 NK---KIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPD  523 (781)
T ss_dssp             TS---EEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTT
T ss_pred             CC---CEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCC
Confidence            66   3555555 56888998776532222111 011135799999999988666554355 6667654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.52  E-value=0.00014  Score=55.51  Aligned_cols=191  Identities=10%  Similarity=-0.009  Sum_probs=102.8

Q ss_pred             ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCC-----------------CCCceeEEEEecCCCceEEe
Q 022590           55 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG-----------------HRNEVLSVDFHPSDIYRIAS  117 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-----------------~~~~v~~l~~~~~~~~~l~~  117 (294)
                      ...+++|.+ ++++++++..++.|..|+..+++.. .+.....                 ....+..+++.+.+++ |+.
T Consensus        20 ~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v   96 (322)
T 2fp8_A           20 APNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYI   96 (322)
T ss_dssp             CCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEE
T ss_pred             CceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEE
Confidence            456788998 7787888888999999998765433 2221000                 0134788999863455 555


Q ss_pred             eecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee-cCCCceeeccee---cceEEEee-----------
Q 022590          118 CGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRWL---GDFILSKS-----------  182 (294)
Q Consensus       118 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~---~~~l~~~~-----------  182 (294)
                      +...+.+..+|........   +..                 ... ........+.++   |++.++-.           
T Consensus        97 ~d~~~~i~~~d~~~g~~~~---~~~-----------------~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~  156 (322)
T 2fp8_A           97 VDCYYHLSVVGSEGGHATQ---LAT-----------------SVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQ  156 (322)
T ss_dssp             EETTTEEEEECTTCEECEE---EES-----------------EETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHH
T ss_pred             EECCCCEEEEeCCCCEEEE---ecc-----------------cCCCCcccccceEEEecCCCEEEEECCcccccccccce
Confidence            5444558888866421100   000                 000 000112333332   33333321           


Q ss_pred             ------CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeec
Q 022590          183 ------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL  256 (294)
Q Consensus       183 ------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  256 (294)
                            .++.|..||..+++          ...+.........++++|+++ .++++-...+.|..|++..........+
T Consensus       157 ~~~~~~~~g~v~~~d~~~~~----------~~~~~~~~~~p~gia~~~dg~-~lyv~d~~~~~I~~~~~~~~~~~~~~~~  225 (322)
T 2fp8_A          157 IMDTSDKTGRLIKYDPSTKE----------TTLLLKELHVPGGAEVSADSS-FVLVAEFLSHQIVKYWLEGPKKGTAEVL  225 (322)
T ss_dssp             HHHHTCCCEEEEEEETTTTE----------EEEEEEEESCCCEEEECTTSS-EEEEEEGGGTEEEEEESSSTTTTCEEEE
T ss_pred             ehcccCCCceEEEEeCCCCE----------EEEeccCCccCcceEECCCCC-EEEEEeCCCCeEEEEECCCCcCCccceE
Confidence                  13667777765442          111111112345789999984 2344446678999999875321111111


Q ss_pred             cccccCCCeEEEEEccCCCEEEEecc
Q 022590          257 SHAQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       257 ~~~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                      ..  ..+ ...++++++|++.++...
T Consensus       226 ~~--~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          226 VK--IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             EE--CSS-EEEEEECTTSCEEEEEEE
T ss_pred             Ee--CCC-CCCeEECCCCCEEEEecC
Confidence            11  112 678999999987776544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.51  E-value=0.00016  Score=55.08  Aligned_cols=202  Identities=5%  Similarity=-0.076  Sum_probs=115.1

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCC----ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      ...+++|.  +.+..+.++-..++.|..+++..    ......+...-.....+++.+.++.++++-...+.|.+.++..
T Consensus        31 ~p~g~~~d--~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           31 NVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             SEEEEEEE--TTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEEEE--eCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            34577776  65543666666678999999875    2222222222245678898864556666666788999999865


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecC-CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      ......+.   ..-.....+++.|.++.++++.... +.|...++....                       ........
T Consensus       109 ~~~~~~~~---~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-----------------------~~~~~~~~  162 (316)
T 1ijq_A          109 VKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----------------------IYSLVTEN  162 (316)
T ss_dssp             SSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-----------------------EEEEECSS
T ss_pred             CceEEEEE---CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-----------------------eEEEEECC
Confidence            44333333   2335678999998555555554333 678777775411                       00011112


Q ss_pred             CCceeeccee--cceE-EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          165 SNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      -.....++++  +..| ++-...+.|..+|+.....       ..+............+++.. +  .++++-...+.|.
T Consensus       163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-------~~~~~~~~~~~~P~giav~~-~--~ly~~d~~~~~V~  232 (316)
T 1ijq_A          163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFE-D--KVFWTDIINEAIF  232 (316)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEET-T--EEEEEETTTTEEE
T ss_pred             CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-------EEEeecCCccCCcEEEEEEC-C--EEEEEECCCCeEE
Confidence            2345566775  4444 4445567899999874321       12211111123456777742 2  4566666778898


Q ss_pred             EEeccCCC
Q 022590          242 VWELQSSP  249 (294)
Q Consensus       242 i~d~~~~~  249 (294)
                      .++..+++
T Consensus       233 ~~~~~~g~  240 (316)
T 1ijq_A          233 SANRLTGS  240 (316)
T ss_dssp             EEETTTCC
T ss_pred             EEeCCCCc
Confidence            88876554

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.50  E-value=6.2e-06  Score=69.73  Aligned_cols=220  Identities=7%  Similarity=-0.118  Sum_probs=118.4

Q ss_pred             CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC----CceEEEeeccCCCCCceeEEEE
Q 022590           32 NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT----GICILIFAGAGGHRNEVLSVDF  107 (294)
Q Consensus        32 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~----~~~~~~~~~~~~~~~~v~~l~~  107 (294)
                      .+.|+..++.+.+....+.. ...+..|+|.+.++.++++-...+.|..+++..    ......+.   ........|++
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~---~~~~~P~glav  460 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQAPDGLAV  460 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC---SCC--CCCEEC
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe---CCCCCcceEEE
Confidence            35788888876655444433 345678999984444555555668899999865    22211111   11224567888


Q ss_pred             ecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee-CC
Q 022590          108 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS-VD  184 (294)
Q Consensus       108 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d  184 (294)
                      .+.++.++++-...+.|.++++.....                       .............++++  +.+|+.+. ..
T Consensus       461 D~~~g~LY~tD~~~~~I~v~d~dg~~~-----------------------~~l~~~~~~~P~giavDp~~g~ly~td~~~  517 (699)
T 1n7d_A          461 DWIHSNIYWTDSVLGTVSVADTKGVKR-----------------------KTLFREQGSKPRAIVVDPVHGFMYWTDWGT  517 (699)
T ss_dssp             CCSSSBCEECCTTTSCEEEEBSSSCCE-----------------------EEECCCSSCCCCCEECCSSSSCCEECCCSS
T ss_pred             EeeCCcEEEEeccCCeEEEEecCCCce-----------------------EEEEeCCCCCcceEEEccCCCcEEEcccCC
Confidence            764667666666678899998875211                       01111111222344443  33333332 22


Q ss_pred             -CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCC
Q 022590          185 -NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS  263 (294)
Q Consensus       185 -~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  263 (294)
                       +.|..+++.....       ..+  ..........|+++|++. .+.++-...+.|..+++.......+....  ....
T Consensus       518 ~~~I~~~~~dG~~~-------~~l--~~~~l~~PnGlavd~~~~-~LY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~~  585 (699)
T 1n7d_A          518 PAKIKKGGLNGVDI-------YSL--VTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDE--KRLA  585 (699)
T ss_dssp             SCCEEBCCSSSCCC-------CEE--SCSSCSSCCCEEECTTTC-CEEEEETTTTEEEEECSSSSCCEEECCCS--SSCS
T ss_pred             CCeEEEEeCCCCCe-------eEE--EeCCCCCccEEEEeccCC-EEEEEecCCCeEEEEccCCCceEEEEecC--CcCC
Confidence             6777777653321       011  111123456799999875 45555567788999999764432222211  1112


Q ss_pred             CeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          264 PIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       264 ~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ....|++..+ .++++....+.|..++.
T Consensus       586 ~P~glavd~~-~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          586 HPFSLAVFED-KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             SCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred             CceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence            2345566544 45555566678888875

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.48  E-value=0.00017  Score=54.34  Aligned_cols=229  Identities=11%  Similarity=0.084  Sum_probs=113.4

Q ss_pred             CCceEEEEee-cC-----CeEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCC-----CcEEEEEcCCCc
Q 022590           21 DGIPFLVAGG-IN-----GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQTGI   87 (294)
Q Consensus        21 ~~~~~l~~~~-~d-----g~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~   87 (294)
                      ++. +++.|+ .+     ..+.+||..+.+-.  ..+.........+..   ++.+++.|+.+     ..+.+||+.+++
T Consensus        14 ~~~-i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~   89 (301)
T 2vpj_A           14 NEV-LLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL---HDRIYVIGGYDGRSRLSSVECLDYTADE   89 (301)
T ss_dssp             CEE-EEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred             CCE-EEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE---CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence            344 677777 33     36889998776422  122211111122222   45777777765     458899988766


Q ss_pred             ---eEEEeeccCCCCCceeEEEEecCCCceEEeeecCC-----cEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           88 ---CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        88 ---~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                         -... ......... .++...  ++.+++.|+.++     .+.+||+.+..-..                     +.
T Consensus        90 ~~~W~~~-~~~p~~r~~-~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~---------------------~~  144 (301)
T 2vpj_A           90 DGVWYSV-APMNVRRGL-AGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM---------------------LG  144 (301)
T ss_dssp             TCCCEEE-CCCSSCCBS-CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE---------------------EE
T ss_pred             CCeeEEC-CCCCCCccc-eeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE---------------------CC
Confidence               3222 211111111 222222  567777777543     57777776532110                     00


Q ss_pred             EeecCCCceeecceecceEEEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          160 IASVHSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                      ........-.++..++.+++.|+.+     ..+..||+.+.+       ...+...+........+.  .++  .+++.|
T Consensus       145 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~-------W~~~~~~p~~r~~~~~~~--~~~--~i~v~G  213 (301)
T 2vpj_A          145 DMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGH-------WTNVTPMATKRSGAGVAL--LND--HIYVVG  213 (301)
T ss_dssp             ECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEEE--ETT--EEEEEC
T ss_pred             CCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCc-------EEeCCCCCcccccceEEE--ECC--EEEEEe
Confidence            1111111112222346667777654     458888987653       122222222211112222  233  466666


Q ss_pred             cCC-----CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC-----CcEEEEecCC
Q 022590          235 NRE-----GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRWDAIP  293 (294)
Q Consensus       235 ~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~vw~~~~  293 (294)
                      +.+     ..+.+||+.+.+......+..  .......+.  -++++++.|+.+     ..+.+||.++
T Consensus       214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTT--PRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEEECCCSS--CCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred             CCCCCcccceEEEEeCCCCcEEECCCCCC--cccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCC
Confidence            653     568999998876444333321  111122222  267777888765     3577888754

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.48  E-value=0.00019  Score=54.63  Aligned_cols=225  Identities=7%  Similarity=-0.082  Sum_probs=130.1

Q ss_pred             EEEEeecCCeEEEEEcCCccc-cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE-EEeeccCCCCCce
Q 022590           25 FLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI-LIFAGAGGHRNEV  102 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v  102 (294)
                      +|+.+. ...|+..+++.... ...+......+..++|.+.++.++.+-...+.|..+++..+... ..+.   ..-...
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~---~~l~~p   81 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV---SGLLSP   81 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE---ECCSCC
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc---CCCCCc
Confidence            444444 45799999977642 22222223456789999855666666667788999998765321 1222   122356


Q ss_pred             eEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEE
Q 022590          103 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILS  180 (294)
Q Consensus       103 ~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~  180 (294)
                      ..+++.+.++.++++-...+.|.++++....                       ..............++++  +..|+.
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-----------------------~~~l~~~~~~~P~giavdp~~g~ly~  138 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSL-----------------------RKVLFWQELDQPRAIALDPSSGFMYW  138 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCS-----------------------CEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCc-----------------------EEEEEeCCCCCccEEEEeCCCCEEEE
Confidence            7899987566766776677889999887521                       011111122333455554  344444


Q ss_pred             ee--CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc
Q 022590          181 KS--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH  258 (294)
Q Consensus       181 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  258 (294)
                      +.  ..+.|...++.....         .......-.....+++++++. .+.++-...+.|..+|+..........   
T Consensus       139 td~~~~~~I~r~~~dG~~~---------~~~~~~~l~~Pnglavd~~~~-~lY~aD~~~~~I~~~d~dG~~~~~~~~---  205 (318)
T 3sov_A          139 TDWGEVPKIERAGMDGSSR---------FIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVVK---  205 (318)
T ss_dssp             EECSSSCEEEEEETTSCSC---------EEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEC---
T ss_pred             EecCCCCEEEEEEcCCCCe---------EEEEECCCCCccEEEEeccCC-EEEEEECCCCEEEEEcCCCCceEEEec---
Confidence            33  357788888764321         111112234567899998764 455555667899999987644322221   


Q ss_pred             cccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          259 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       259 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                       ........+++.. +.++.+-...+.|..++.
T Consensus       206 -~~~~~P~glav~~-~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          206 -GSLPHPFALTLFE-DILYWTDWSTHSILACNK  236 (318)
T ss_dssp             -SCCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             -CCCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence             1223456777753 345555556677877775

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.44  E-value=0.00034  Score=57.89  Aligned_cols=81  Identities=11%  Similarity=0.105  Sum_probs=48.5

Q ss_pred             CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCC
Q 022590          184 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS  263 (294)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  263 (294)
                      +|.|.-||+.+++.         +-+.+... +...-.+...+  .+++.++.||.++.||.++++.+............
T Consensus       465 ~G~l~A~D~~tG~~---------~W~~~~~~-~~~~g~~~tag--glvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~  532 (582)
T 1flg_A          465 VGSLRAMDPVSGKV---------VWEHKEHL-PLWAGVLATAG--NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP  532 (582)
T ss_dssp             SEEEEEECTTTCCE---------EEEEEESS-CCCSCCEEETT--TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             cceEEEEECCCCCE---------EEEecCCC-CCcccceEeCC--CEEEEECCCCcEEEEECCCCCEEEEecCCCCcccC
Confidence            67899999988763         22222211 11111112223  47788999999999999999877666654222222


Q ss_pred             CeEEEEEccCCC-EEEE
Q 022590          264 PIRQTAMSYDGS-TILS  279 (294)
Q Consensus       264 ~v~~~~~s~~~~-~l~s  279 (294)
                      +   +.+..+|+ |+++
T Consensus       533 P---~~y~~~G~qYv~~  546 (582)
T 1flg_A          533 P---ITWEQDGEQYLGV  546 (582)
T ss_dssp             C---EEEEETTEEEEEE
T ss_pred             c---eEEEECCEEEEEE
Confidence            2   55667876 4444

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.43  E-value=0.00036  Score=55.53  Aligned_cols=247  Identities=9%  Similarity=0.011  Sum_probs=130.6

Q ss_pred             eeEEEEEeecCC---CceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC---Cc-EEEEE
Q 022590           10 SFYTVSWACNVD---GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD---ES-VRLWN   82 (294)
Q Consensus        10 ~v~~~~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---g~-i~vwd   82 (294)
                      .-..++|.  |+   |.  |..+...+.|+.++..+++..... ........+++++ +++++++-...   .. +...+
T Consensus       140 ~P~gvavd--~~s~~g~--Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFD--PNSNYDD--LYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEEC--TTTTTCE--EEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEc--cccCCCE--EEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEE
Confidence            34577776  63   54  444444489999998777654433 3445689999999 77755554321   11 22233


Q ss_pred             cCCCce-EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           83 VQTGIC-ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        83 ~~~~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      ...+.. ...+.    .-.....++++|.++.++++-..++.|+.+|...+...                    ..+...
T Consensus       214 ~~~~~~~~~~~~----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~--------------------~~~~~~  269 (433)
T 4hw6_A          214 RASGFTERLSLC----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT--------------------EEEVMM  269 (433)
T ss_dssp             GGGTTCCEEEEE----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE--------------------EEEEEC
T ss_pred             CCCCeecccccc----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE--------------------EEEecc
Confidence            222211 01121    22345678898856666666667788999988742110                    000000


Q ss_pred             ecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeee------------ecCCCCeeEEEE----
Q 022590          162 SVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY------------PVPECDIWFIKF----  222 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------------~~~~~~i~~~~~----  222 (294)
                      . ....-..++++  ++ ++++-...+.|+.++.........  ....+...            ...-.....+++    
T Consensus       270 ~-~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~  346 (433)
T 4hw6_A          270 D-TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNE  346 (433)
T ss_dssp             S-CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECG
T ss_pred             C-CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccc
Confidence            0 11111246665  66 444545578899977653211000  00000000            001123566888    


Q ss_pred             -----cccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc-------------cccCCCeEEEEEc-cCCCEEEEeccC
Q 022590          223 -----SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH-------------AQSKSPIRQTAMS-YDGSTILSCCED  283 (294)
Q Consensus       223 -----~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~~~~~v~~~~~s-~~~~~l~s~~~d  283 (294)
                           .+++  .+.++-...+.|+.++. ++......-...             ...-.....++++ ++|.++++-..+
T Consensus       347 ~y~~dd~~g--~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  423 (433)
T 4hw6_A          347 AYAGEEDEY--DFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN  423 (433)
T ss_dssp             GGTTSSCCE--EEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             cccccCCCC--cEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence                 4444  56666667788999885 332111110000             0112346789999 677777776778


Q ss_pred             CcEEEEecC
Q 022590          284 GAIWRWDAI  292 (294)
Q Consensus       284 g~i~vw~~~  292 (294)
                      +.|+..+++
T Consensus       424 ~rIr~i~~e  432 (433)
T 4hw6_A          424 HRVRKIAPE  432 (433)
T ss_dssp             TEEEEEEEC
T ss_pred             CEEEEEecC
Confidence            889988875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.39  E-value=0.00075  Score=57.79  Aligned_cols=225  Identities=8%  Similarity=-0.099  Sum_probs=126.2

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC----ceEEEeeccCCCCC
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG----ICILIFAGAGGHRN  100 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~  100 (294)
                      +|+.+. ...|+..++........+. ....+..|+|.+.++.++++-...+.|+.+++...    .....+.   ....
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~---~~l~  471 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---RDIQ  471 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC---SSCS
T ss_pred             cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe---cCCC
Confidence            444443 3467888877655433333 34567899999855666666666788988888643    2222222   2334


Q ss_pred             ceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceE
Q 022590          101 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI  178 (294)
Q Consensus       101 ~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  178 (294)
                      ....|++.+.+++++++-...+.|.+.++....                       ..............|+++  ...|
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-----------------------~~~l~~~~l~~P~gIaVDp~~g~L  528 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-----------------------RKTLFRENGSKPRAIVVDPVHGFM  528 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-----------------------EEEEEECTTCCEEEEEEETTTTEE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-----------------------EEEEEeCCCCCcceEEEecCCCCE
Confidence            577899988556777777778899999987521                       111112222345566665  2344


Q ss_pred             EEee-C-CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeec
Q 022590          179 LSKS-V-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL  256 (294)
Q Consensus       179 ~~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  256 (294)
                      +.+. . .+.|...++....         ..............|++.+... .+.++-...+.|..+++.......+...
T Consensus       529 YwtD~g~~~~I~~~~~dG~~---------~~~lv~~~l~~P~GLavD~~~~-~LYwaD~~~~~I~~~d~dG~~~~~v~~~  598 (791)
T 3m0c_C          529 YWTDWGTPAKIKKGGLNGVD---------IYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILED  598 (791)
T ss_dssp             EEEECSSSCEEEEEETTSCC---------EEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred             EEecCCCCCeEEEEecCCCc---------eEEEEeCCCCCceEEEEecCCC-eEEEEeCCCCcEEEEecCCCceEEEecC
Confidence            4433 2 3678888876432         1111222235678899997764 3444445667899999876543333221


Q ss_pred             cccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          257 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       257 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      .  .......+|++..+ .++++-...+.|...+
T Consensus       599 ~--~~l~~P~glav~~~-~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          599 E--KRLAHPFSLAVFED-KVFWTDIINEAIFSAN  629 (791)
T ss_dssp             T--TTTSSEEEEEEETT-EEEEEETTTTEEEEEE
T ss_pred             C--CccCCCCEEEEeCC-EEEEEECCCCEEEEEe
Confidence            1  11123446666432 3444444556666665

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.36  E-value=0.00038  Score=52.63  Aligned_cols=226  Identities=8%  Similarity=0.015  Sum_probs=112.5

Q ss_pred             EEEEeecC--CeEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCC----CcEEEEEcCCCceEEEeeccC
Q 022590           25 FLVAGGIN--GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD----ESVRLWNVQTGICILIFAGAG   96 (294)
Q Consensus        25 ~l~~~~~d--g~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~~~   96 (294)
                      +++.|+.+  ..+.+||..+++-.  ..+......-..+.+   ++.+++.|+.+    ..+.+||+.+++-...-. ..
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~-~p   89 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG-PP   89 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC-CS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC-CC
Confidence            66667653  57889998776422  222211122222222   55677888755    568889988775433222 11


Q ss_pred             CCCCceeEEEEecCCCceEEeeecC------CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceee
Q 022590           97 GHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC  170 (294)
Q Consensus        97 ~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  170 (294)
                       ....-.+++..  ++.+++.|+.+      ..+.+||+.+..-..        .+.             .......-.+
T Consensus        90 -~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~--------~~~-------------~p~~r~~~~~  145 (306)
T 3ii7_A           90 -TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT--------KPS-------------MLTQRCSHGM  145 (306)
T ss_dssp             -SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE--------ECC-------------CSSCCBSCEE
T ss_pred             -ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe--------CCC-------------CcCCcceeEE
Confidence             11111222222  66777777765      457888877632110        000             0000111112


Q ss_pred             cceecceEEEeeC---------CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC----
Q 022590          171 NRWLGDFILSKSV---------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE----  237 (294)
Q Consensus       171 ~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----  237 (294)
                      +..++.+++.|+.         -..+.+||+.+.+       ...+...+.....-..+.+  ++  .+++.|+.+    
T Consensus       146 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~--~i~v~GG~~~~~~  214 (306)
T 3ii7_A          146 VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATET-------WTELCPMIEARKNHGLVFV--KD--KIFAVGGQNGLGG  214 (306)
T ss_dssp             EEETTEEEEECCEESCTTTCEECCCEEEEETTTTE-------EEEECCCSSCCBSCEEEEE--TT--EEEEECCEETTEE
T ss_pred             EEECCEEEEECCCCCCCCcccccceEEEeCCCCCe-------EEECCCccchhhcceEEEE--CC--EEEEEeCCCCCCC
Confidence            2234566666653         3458889987653       1222222221111112222  33  466666543    


Q ss_pred             -CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC-----CcEEEEecCC
Q 022590          238 -GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRWDAIP  293 (294)
Q Consensus       238 -g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~vw~~~~  293 (294)
                       ..+.+||+.+.+......+.  ........+.+  ++++++.|+.+     ..+.+||.++
T Consensus       215 ~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          215 LDNVEYYDIKLNEWKMVSPMP--WKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             BCCEEEEETTTTEEEECCCCS--CCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred             CceEEEeeCCCCcEEECCCCC--CCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence             46889999887544333332  11122233333  67788888754     4578888764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.34  E-value=1.6e-05  Score=67.30  Aligned_cols=202  Identities=6%  Similarity=-0.049  Sum_probs=109.1

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCC----ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN----EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .+..++|.  +.+..++++-...+.|+.+++..    ......+.........|++.+.++.++++-...+.|.+.++..
T Consensus       407 ~p~gla~d--~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg  484 (699)
T 1n7d_A          407 NVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  484 (699)
T ss_dssp             TCCCCEEE--TTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred             ceEEEccc--cccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence            34566776  65552444445667899998875    2222222222234567888864666666666778899999865


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecC-CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      ......+.   ........|++.|.++.++++-... +.|..+++....                       ........
T Consensus       485 ~~~~~l~~---~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-----------------------~~~l~~~~  538 (699)
T 1n7d_A          485 VKRKTLFR---EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----------------------IYSLVTEN  538 (699)
T ss_dssp             CCEEEECC---CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-----------------------CCEESCSS
T ss_pred             CceEEEEe---CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-----------------------eeEEEeCC
Confidence            44333332   1224567899998555555544333 677776665411                       00001111


Q ss_pred             CCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          165 SNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       165 ~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      -.....|+++   +.++++-...+.|..+|+.....       ..+............+++..+   .++++....+.|.
T Consensus       539 l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~~~~P~glavd~~---~lywtd~~~~~V~  608 (699)
T 1n7d_A          539 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFED---KVFWTDIINEAIF  608 (699)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCC-------EEECCCSSSCSSCCCCEEETT---EEEEECSTTTCEE
T ss_pred             CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCce-------EEEEecCCcCCCceEeEEECC---EEEEEeCCCCeEE
Confidence            2234456665   34555555677899999864321       111111111122334555433   3555666778899


Q ss_pred             EEeccCCC
Q 022590          242 VWELQSSP  249 (294)
Q Consensus       242 i~d~~~~~  249 (294)
                      .++..+++
T Consensus       609 ~~d~~~G~  616 (699)
T 1n7d_A          609 SANRLTGS  616 (699)
T ss_dssp             EEETTTEE
T ss_pred             EEEccCCC
Confidence            99876654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.31  E-value=0.0012  Score=56.56  Aligned_cols=203  Identities=5%  Similarity=-0.069  Sum_probs=112.6

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      ..+.+|+|.  +.+..++++-...+.|+.+++...    .....+.........|++.+.+++++++-...+.|.+.++.
T Consensus       424 ~~~~gl~~d--~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          424 RNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SSEEEEEEE--TTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CceEEEeec--ccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            345567776  544425566666788888887653    22223332345567899887455677777778899999996


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC-CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .......+.   ..-.....|++.|..+.++++-... +.|...++....                       .......
T Consensus       502 G~~~~~l~~---~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-----------------------~~~lv~~  555 (791)
T 3m0c_C          502 GVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----------------------IYSLVTE  555 (791)
T ss_dssp             SSSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-----------------------EEEEECS
T ss_pred             CCeEEEEEe---CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-----------------------eEEEEeC
Confidence            554433333   2345689999999556655554333 678887776521                       1111112


Q ss_pred             CCCceeeccee--cceE-EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          164 HSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      .-.....|+++  +..| ++=...+.|..+++.....       ..+............|++.  +. .++++-...+.|
T Consensus       556 ~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-------~~v~~~~~~l~~P~glav~--~~-~lYwtD~~~~~I  625 (791)
T 3m0c_C          556 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVF--ED-KVFWTDIINEAI  625 (791)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEE--TT-EEEEEETTTTEE
T ss_pred             CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-------EEEecCCCccCCCCEEEEe--CC-EEEEEECCCCEE
Confidence            22345566665  3444 4444567888888865431       1111111111234455553  32 355555566778


Q ss_pred             EEEeccCCC
Q 022590          241 FVWELQSSP  249 (294)
Q Consensus       241 ~i~d~~~~~  249 (294)
                      ...+..+++
T Consensus       626 ~~~dk~tG~  634 (791)
T 3m0c_C          626 FSANRLTGS  634 (791)
T ss_dssp             EEEETTTCC
T ss_pred             EEEeCCCCc
Confidence            888765553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.31  E-value=0.0005  Score=51.87  Aligned_cols=226  Identities=12%  Similarity=0.122  Sum_probs=110.4

Q ss_pred             EEEEeecC----CeEEEEEcCCccccc--eecccCcceEEEEeCCCCCceEEEeeCCC-----cEEEEEcCCCceEEEee
Q 022590           25 FLVAGGIN----GIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTGICILIFA   93 (294)
Q Consensus        25 ~l~~~~~d----g~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~   93 (294)
                      +++.|+.+    ..+..||..+.+-..  .+......-..+.+   ++.+++.|+.++     .+.+||..+.+-... .
T Consensus        18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~   93 (302)
T 2xn4_A           18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM---AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV-A   93 (302)
T ss_dssp             EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE-C
T ss_pred             EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE---CCEEEEEeCcCCCccccceEEECCCCCceeeC-C
Confidence            67777754    468889987764221  11111111122222   457777777553     578889877653332 2


Q ss_pred             ccCCCCCceeEEEEecCCCceEEeeecCC-----cEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           94 GAGGHRNEVLSVDFHPSDIYRIASCGMDN-----TVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        94 ~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      ........ .+++..  ++.+++.|+.++     .+.+||+.+..-        ...+             .........
T Consensus        94 ~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W--------~~~~-------------~~p~~r~~~  149 (302)
T 2xn4_A           94 NMRDRRST-LGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW--------FHVA-------------PMNTRRSSV  149 (302)
T ss_dssp             CCSSCCBS-CEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE--------EEEC-------------CCSSCCBSC
T ss_pred             CCCccccc-eEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE--------eecC-------------CCCCcccCc
Confidence            11111111 222332  567788887664     466777665221        1000             000011111


Q ss_pred             eecceecceEEEeeCC-------CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC----
Q 022590          169 DCNRWLGDFILSKSVD-------NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE----  237 (294)
Q Consensus       169 ~~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----  237 (294)
                      .++.+++.+++.|+.+       ..+..||+.+.+       ...+...+........+.  .++  .+++.|+.+    
T Consensus       150 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~--~~~--~iyv~GG~~~~~~  218 (302)
T 2xn4_A          150 GVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNE-------WTYIAEMSTRRSGAGVGV--LNN--LLYAVGGHDGPLV  218 (302)
T ss_dssp             EEEEETTEEEEECCEETTTTEECCCEEEEETTTTE-------EEEECCCSSCCBSCEEEE--ETT--EEEEECCBSSSSB
T ss_pred             eEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCc-------EEECCCCccccccccEEE--ECC--EEEEECCCCCCcc
Confidence            1222346666666542       358889987653       122222222211112222  233  466666653    


Q ss_pred             -CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC-----cEEEEecCC
Q 022590          238 -GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG-----AIWRWDAIP  293 (294)
Q Consensus       238 -g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg-----~i~vw~~~~  293 (294)
                       ..+.+||+.+.+......+...  ...-..+  ..++++++.|+.++     .+.+||.++
T Consensus       219 ~~~~~~yd~~~~~W~~~~~~~~~--r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          219 RKSVEVYDPTTNAWRQVADMNMC--RRNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSC--CBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             cceEEEEeCCCCCEeeCCCCCCc--cccCeEE--EECCEEEEECCcCCCcccccEEEEcCCC
Confidence             4688999988764443333211  1111222  23677888887654     488888764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.23  E-value=0.001  Score=52.43  Aligned_cols=203  Identities=5%  Similarity=-0.069  Sum_probs=116.7

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc----cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE----KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      ..+..++|.  +.+..+..+-...+.|+.+++...    .....+.........|++.+.+++++++-...+.|.+.+++
T Consensus       112 ~~~~~l~~d--~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          112 RNVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCEEEEEEE--TTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             CcceEEeee--eccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            456778886  644425555566788988888652    22222332345678888887456666666677899999987


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeec-CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .......+.   ..-.....|++.|.++.++.+-.. .+.|...++....                       .......
T Consensus       190 g~~~~~l~~---~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-----------------------~~~~~~~  243 (400)
T 3p5b_L          190 GVKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----------------------IYSLVTE  243 (400)
T ss_dssp             TCSEEEEEE---CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-----------------------CEEEECS
T ss_pred             CCceEEEEe---CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-----------------------cEEEEEC
Confidence            555444443   233457899999955555555422 4678888776511                       1111111


Q ss_pred             CCCceeeccee--cceEE-EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          164 HSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      .-.....++++  +..|+ +=...+.|..+|+.....       ..+............+++.  +. .++.+-...+.|
T Consensus       244 ~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~~~~~~~l~~P~gl~v~--~~-~lywtd~~~~~V  313 (400)
T 3p5b_L          244 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVF--ED-KVFWTDIINEAI  313 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-------EEEEECSSTTSSEEEEEEE--TT-EEEEEESSSCSE
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-------EEEEeCCCCCCCCEEEEEe--CC-EEEEecCCCCeE
Confidence            22345667766  44444 444567899999864321       1121111122344566663  32 355666677888


Q ss_pred             EEEeccCCC
Q 022590          241 FVWELQSSP  249 (294)
Q Consensus       241 ~i~d~~~~~  249 (294)
                      ..+|..+++
T Consensus       314 ~~~~~~~G~  322 (400)
T 3p5b_L          314 FSANRLTGS  322 (400)
T ss_dssp             EEEESSSCC
T ss_pred             EEEEcCCCC
Confidence            888866554

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.20  E-value=0.00091  Score=50.62  Aligned_cols=229  Identities=14%  Similarity=0.074  Sum_probs=111.1

Q ss_pred             CCceEEEEeecC----CeEEEEEcCCccccc--eecccCcceEEEEeCCCCCceEEEeeC----C-----CcEEEEEcCC
Q 022590           21 DGIPFLVAGGIN----GIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASK----D-----ESVRLWNVQT   85 (294)
Q Consensus        21 ~~~~~l~~~~~d----g~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~----d-----g~i~vwd~~~   85 (294)
                      ++. +++.|+.+    ..+.+||..+.+-..  .+......- +++..  ++.+++.|+.    +     ..+.+||+.+
T Consensus        24 ~~~-i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           24 GRL-IYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCC-EEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCE-EEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            455 77777742    368899987764321  111111111 22222  4567777765    2     4578889877


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecC-----CcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      .+-.. +......... .+++..  ++.+++.|+.+     ..+.+||+.+..-        ...+.             
T Consensus       100 ~~W~~-~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--------~~~~~-------------  154 (308)
T 1zgk_A          100 NQWSP-CAPMSVPRNR-IGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW--------HLVAP-------------  154 (308)
T ss_dssp             TEEEE-CCCCSSCCBT-CEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE--------EECCC-------------
T ss_pred             CeEeE-CCCCCcCccc-cEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE--------eECCC-------------
Confidence            65332 2211111111 222222  56777777654     3577777765321        11000             


Q ss_pred             eecCCCceeecceecceEEEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590          161 ASVHSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       161 ~~~~~~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                      .......-.++.+++.+++.|+.+     ..+..||+.+.+-       ..+...+........+.+  ++  .+++.|+
T Consensus       155 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-------~~~~~~p~~r~~~~~~~~--~~--~iyv~GG  223 (308)
T 1zgk_A          155 MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEW-------RMITAMNTIRSGAGVCVL--HN--CIYAAGG  223 (308)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE-------EECCCCSSCCBSCEEEEE--TT--EEEEECC
T ss_pred             CCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeE-------eeCCCCCCccccceEEEE--CC--EEEEEeC
Confidence            000011111222346666676654     4588888876531       111112222221222222  33  4666666


Q ss_pred             CC-----CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC-----CcEEEEecCC
Q 022590          236 RE-----GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED-----GAIWRWDAIP  293 (294)
Q Consensus       236 ~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-----g~i~vw~~~~  293 (294)
                      .+     ..+.+||+.+.+......+.  .....-..+.  -++++++.|+.+     ..+.+||+++
T Consensus       224 ~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~  287 (308)
T 1zgk_A          224 YDGQDQLNSVERYDVETETWTFVAPMK--HRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDT  287 (308)
T ss_dssp             BCSSSBCCCEEEEETTTTEEEECCCCS--SCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCCCCccceEEEEeCCCCcEEECCCCC--CCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCC
Confidence            54     56899999887544333222  1111122222  267778888754     3477888764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.17  E-value=0.0013  Score=54.57  Aligned_cols=204  Identities=10%  Similarity=0.016  Sum_probs=109.1

Q ss_pred             ceEEEeeC-CCcEEEEEc-CCCceEEEeeccCCCC--------CceeEEEEecCCCce----EEeeecCCcEEEEecccc
Q 022590           67 SLVVSASK-DESVRLWNV-QTGICILIFAGAGGHR--------NEVLSVDFHPSDIYR----IASCGMDNTVKIWSMKEF  132 (294)
Q Consensus        67 ~~l~s~~~-dg~i~vwd~-~~~~~~~~~~~~~~~~--------~~v~~l~~~~~~~~~----l~~~~~dg~i~~wd~~~~  132 (294)
                      ..++.++. ++.|.-+|. .+|+.+-.+.......        .....+++.| .+..    ++.++.|+.+..+|..++
T Consensus        63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEEEEECCCC
Confidence            35666666 889999999 8999988776311100        0012345544 2333    777888999999999885


Q ss_pred             ccccccceeecCCCCCCCCceeeeceEEeecCCCceee-cceecceEEEee------CCCeEEEecCCCCCCCCCCCCce
Q 022590          133 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC-NRWLGDFILSKS------VDNEIVLWEPKMKEQSPGEGTAD  205 (294)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~------~d~~i~iwd~~~~~~~~~~~~~~  205 (294)
                      +..-.......                   .....+.+ -...+..+++++      .++.|+-+|.++++.........
T Consensus       142 ~~~W~~~~~~~-------------------~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~  202 (599)
T 1w6s_A          142 ETVWKVENSDI-------------------KVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (599)
T ss_dssp             CEEEEEECCCG-------------------GGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             CEEEeecCCCC-------------------CccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence            44322111000                   00001111 111244555555      37999999999887421100000


Q ss_pred             eeee----------------------------eecCCCCe-eEEEEcccCCcceEEEEcCC----------------CeE
Q 022590          206 ILQK----------------------------YPVPECDI-WFIKFSCDFHYNAAAIGNRE----------------GKI  240 (294)
Q Consensus       206 ~~~~----------------------------~~~~~~~i-~~~~~~~~~~~~~l~~~~~d----------------g~i  240 (294)
                      ....                            +......+ ..+++.+..  ..++.+..+                +.|
T Consensus       203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~--g~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT--NLIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT--TEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC--CEEEEeCCCCccccCcccCCCccccceE
Confidence            0000                            00000000 123444444  466666554                479


Q ss_pred             EEEeccCCCceeeeecccc------ccCCCeEEEEEc-cCC---CEEEEeccCCcEEEEecCC
Q 022590          241 FVWELQSSPPVLIARLSHA------QSKSPIRQTAMS-YDG---STILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~~------~~~~~v~~~~~s-~~~---~~l~s~~~dg~i~vw~~~~  293 (294)
                      .-+|.++++.+......+.      ....++. +... .+|   +.++.++.+|.++++|.++
T Consensus       281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~t  342 (599)
T 1w6s_A          281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTD  342 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTT
T ss_pred             EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCC
Confidence            9999999986665554411      0112232 2222 467   5677889999999998764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.16  E-value=0.0011  Score=50.31  Aligned_cols=200  Identities=9%  Similarity=-0.040  Sum_probs=115.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccc-eecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      ...+++|.  +.+..+..+-...+.|..++.+...... .+...-.....+++.+.++.++++-...+.|.++++.....
T Consensus        36 ~~~~ld~d--~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  113 (318)
T 3sov_A           36 DAAAVDFV--FSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  113 (318)
T ss_dssp             EEEEEEEE--GGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ccEEEEEE--eCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence            34566665  5433266666677889999987653222 22222345677888874566666666778999999865433


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      ...+.   ........+++.|.++.++.+-. ..+.|...++....                       ........-..
T Consensus       114 ~~l~~---~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-----------------------~~~~~~~~l~~  167 (318)
T 3sov_A          114 KVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-----------------------RFIIINSEIYW  167 (318)
T ss_dssp             EEEEC---SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-----------------------CEEEECSSCSC
T ss_pred             EEEEe---CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-----------------------eEEEEECCCCC
Confidence            33332   23456789999984555555442 35677777766411                       00111111233


Q ss_pred             eeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          168 VDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       168 i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      ...++++  +. +.++=+..+.|..+|+.....       ..+.  .........+++..+   .++.+-...+.|..++
T Consensus       168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-------~~~~--~~~~~~P~glav~~~---~lywtd~~~~~V~~~~  235 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-------QAVV--KGSLPHPFALTLFED---ILYWTDWSTHSILACN  235 (318)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEE--CSCCSCEEEEEEETT---EEEEEETTTTEEEEEE
T ss_pred             ccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-------EEEe--cCCCCCceEEEEeCC---EEEEEecCCCeEEEEE
Confidence            4566665  34 444445678899999864321       1111  122344566776433   3556666778899998


Q ss_pred             ccCCC
Q 022590          245 LQSSP  249 (294)
Q Consensus       245 ~~~~~  249 (294)
                      ..+++
T Consensus       236 ~~~G~  240 (318)
T 3sov_A          236 KYTGE  240 (318)
T ss_dssp             TTTCC
T ss_pred             CCCCC
Confidence            86654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.13  E-value=0.002  Score=51.80  Aligned_cols=262  Identities=7%  Similarity=-0.075  Sum_probs=134.1

Q ss_pred             eeEEEEEeecC-CCceEEEEeecCCeEEEEEcCCccccceecc---cCcceEEEEe-------CCCCCceEEEeeCCC-c
Q 022590           10 SFYTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVG---HGDSINEIRT-------QPLKPSLVVSASKDE-S   77 (294)
Q Consensus        10 ~v~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---h~~~v~~~~~-------~~~~~~~l~s~~~dg-~   77 (294)
                      .-..|+|.  | ++..++++-...+.|++.|++++........   .......|+|       ++ ++..|+.+...+ .
T Consensus       140 ~p~~la~d--p~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFD--PLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEE--TTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTT
T ss_pred             CCCEEEEc--cCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCC
Confidence            34577776  6 3442555555557899999887766544332   1235899999       99 666555554443 2


Q ss_pred             ------EEEEEcCC-CceE-----EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecc-------cccccccc
Q 022590           78 ------VRLWNVQT-GICI-----LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMK-------EFWTYVEK  138 (294)
Q Consensus        78 ------i~vwd~~~-~~~~-----~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~-------~~~~~~~~  138 (294)
                            |.+.+... +...     ..+..   . .....++++|.++.++++-..++.|..+|+.       +..... .
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~---~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~t-p  291 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAA---Y-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWD-P  291 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEE---E-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCC-C
T ss_pred             cccCceEEEEecCCCCceeecccceeecc---C-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeec-c
Confidence                  55555333 2221     12221   1 1345788899667777777788889999987       211100 0


Q ss_pred             ceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cce-EEEeeCCCeEEEecCCCCCCCCCCCCceeeeee---e-
Q 022590          139 SFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDF-ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKY---P-  211 (294)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~-  211 (294)
                      ...     ....   ....+... ........++|+  ++. +++-.....|+.++.........  ....+...   . 
T Consensus       292 ~~~-----~~~g---~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~--~~~~~aG~~g~~G  360 (496)
T 3kya_A          292 IVK-----NNPN---TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI--TPYNFVGGYKQSG  360 (496)
T ss_dssp             BGG-----GCTT---TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC--CCEEEEEBTTBCC
T ss_pred             ccc-----cccc---ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceec--ccEEecCCCCCCc
Confidence            000     0000   00001111 112334567776  664 44445667888866532110000  00000000   0 


Q ss_pred             --------cCCCCee-EEEEc-------ccCCcceEEEEcCCCeEEEEeccCCCceeeeec-------------------
Q 022590          212 --------VPECDIW-FIKFS-------CDFHYNAAAIGNREGKIFVWELQSSPPVLIARL-------------------  256 (294)
Q Consensus       212 --------~~~~~i~-~~~~~-------~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------  256 (294)
                              ..-.... .+...       +++  .+.++-.....|+.++. ++......-.                   
T Consensus       361 ~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g--~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G~~dG~~  437 (496)
T 3kya_A          361 YRDDVGTEARMNNPCQGVFVKNPDYTGEEEY--DFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWGTDDGDL  437 (496)
T ss_dssp             CBCCBGGGCBCSSEEEEEEEECTTCCSSCCE--EEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCCCCCEET
T ss_pred             ccCCcccccccCCCeEEEEEccccccccCCC--eEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccccCCCCc
Confidence                    0001233 34443       233  56666667888999983 3321111100                   


Q ss_pred             cccccCCCeEEEEEccC-CCEEEEeccCCcEEEEecCC
Q 022590          257 SHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       257 ~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .....-.....|+++++ |.+.++=..+..|+.++++.
T Consensus       438 ~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~  475 (496)
T 3kya_A          438 REVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQ  475 (496)
T ss_dssp             TTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECC
T ss_pred             hhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCC
Confidence            00001234678999997 77777767788899998864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.11  E-value=0.002  Score=51.25  Aligned_cols=200  Identities=9%  Similarity=0.006  Sum_probs=108.0

Q ss_pred             ceEEEEeCCC--CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC---Cc-EEEEe
Q 022590           55 SINEIRTQPL--KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD---NT-VKIWS  128 (294)
Q Consensus        55 ~v~~~~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d---g~-i~~wd  128 (294)
                      ....|+|+|+  ++. |+.+...+.|+.+|..+++......    .......+++++ ++.++++....   .. +...+
T Consensus       140 ~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~~~----~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIKTT----NIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEECC----CCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEEC
T ss_pred             CCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEeec----CCCCccEEEECC-CCCEEEEcCCCCcccceEEEEE
Confidence            4578999983  344 4444444889999997776554432    445689999999 76755544321   11 22222


Q ss_pred             ccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCce
Q 022590          129 MKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTAD  205 (294)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  205 (294)
                      .....                ..   .....    .......++++   +.++++-..++.|+.+|..++..      ..
T Consensus       214 ~~~~~----------------~~---~~~~~----~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~------~~  264 (433)
T 4hw6_A          214 RASGF----------------TE---RLSLC----NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL------TE  264 (433)
T ss_dssp             GGGTT----------------CC---EEEEE----ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE------EE
T ss_pred             CCCCe----------------ec---ccccc----ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE------EE
Confidence            21100                00   00011    11223344443   45555555678899999875531      00


Q ss_pred             eeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCcee--eeeccc----c---------ccCCCeEEEEE
Q 022590          206 ILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL--IARLSH----A---------QSKSPIRQTAM  270 (294)
Q Consensus       206 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~----~---------~~~~~v~~~~~  270 (294)
                      .+... ........++|+|+++ .+.++-...+.|+.++........  ...+..    .         ..-.....+++
T Consensus       265 ~~~~~-~~~~~~~~ia~dpdG~-~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav  342 (433)
T 4hw6_A          265 EEVMM-DTKGSNFHIVWHPTGD-WAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIF  342 (433)
T ss_dssp             EEEEC-SCCSSCEEEEECTTSS-EEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEE
T ss_pred             EEecc-CCCCCcccEEEeCCCC-EEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEE
Confidence            11111 1112234699999984 255555667899998876321101  001100    0         01123567999


Q ss_pred             ---------ccCCCEEEEeccCCcEEEEec
Q 022590          271 ---------SYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       271 ---------s~~~~~l~s~~~dg~i~vw~~  291 (294)
                               .++|.+.++-...+.|+.++.
T Consensus       343 ~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          343 VKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             EccccccccCCCCcEEEEECCCCEEEEECC
Confidence                     777777777777788888763

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.11  E-value=0.0015  Score=49.66  Aligned_cols=200  Identities=13%  Similarity=0.202  Sum_probs=116.5

Q ss_pred             CceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCC----c---eEEeee-c--CCcEEEEeccccccc
Q 022590           66 PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI----Y---RIASCG-M--DNTVKIWSMKEFWTY  135 (294)
Q Consensus        66 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~----~---~l~~~~-~--dg~i~~wd~~~~~~~  135 (294)
                      ..+++.....+-+.+||+ +|+.+..+.    . +.++.+..-| +-    .   ++++.. .  +++|.+|++......
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~----~-g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~  112 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYN----T-GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEEC----C-SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEcc----C-CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc
Confidence            345666677788999999 899888875    2 5677777766 21    1   233333 3  578999987421110


Q ss_pred             cccceeecCCCCCCCCceeeeceEEeecCCCceeecce--e---cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeee
Q 022590          136 VEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--L---GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQK  209 (294)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~---~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  209 (294)
                          +......        ..++   ..-...+..+++  +   +. ++++...+|.+..|++......  ....+.+++
T Consensus       113 ----l~~i~~~--------~~pv---~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g--~~~~~lVR~  175 (355)
T 3amr_A          113 ----LQSMTDP--------DHPI---ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG--YISGKKVRA  175 (355)
T ss_dssp             ----EEECSCT--------TSCE---ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS--CEEEEEEEE
T ss_pred             ----eeecccc--------ccCc---CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC--cccceEEEE
Confidence                0000000        0000   000133333444  2   32 6778888899999998532110  013346677


Q ss_pred             eecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC---ceeeeeccccccCCCeEEEEE--ccCCC-EEEEec-c
Q 022590          210 YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP---PVLIARLSHAQSKSPIRQTAM--SYDGS-TILSCC-E  282 (294)
Q Consensus       210 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~~~~v~~~~~--s~~~~-~l~s~~-~  282 (294)
                      +... ..+..+...+..  ..|+.+-++..|..++.+...   ...+...........+..|++  .++++ ||++++ .
T Consensus       176 f~lg-sq~EgcvvDd~~--g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG  252 (355)
T 3amr_A          176 FKMN-SQTEGMAADDEY--GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG  252 (355)
T ss_dssp             EECS-SCEEEEEEETTT--TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             ecCC-CCcceEEEcCCC--CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence            7664 467788888766  488889888777777755322   223333322223346888888  45555 666665 6


Q ss_pred             CCcEEEEecC
Q 022590          283 DGAIWRWDAI  292 (294)
Q Consensus       283 dg~i~vw~~~  292 (294)
                      +....+||.+
T Consensus       253 ~~s~~Vydr~  262 (355)
T 3amr_A          253 NSSYAIYDRQ  262 (355)
T ss_dssp             GTEEEEEESS
T ss_pred             CCEEEEEECC
Confidence            6789999986

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.03  E-value=0.00034  Score=59.97  Aligned_cols=195  Identities=12%  Similarity=0.104  Sum_probs=96.8

Q ss_pred             ceEEEEeC-CCCCceEEEee-CCC----cEEEEEcCCC-ceEEE-eeccCCCCCceeEEEEecCCCceEEeeecC-----
Q 022590           55 SINEIRTQ-PLKPSLVVSAS-KDE----SVRLWNVQTG-ICILI-FAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----  121 (294)
Q Consensus        55 ~v~~~~~~-~~~~~~l~s~~-~dg----~i~vwd~~~~-~~~~~-~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-----  121 (294)
                      .+...+|| | ++++|+-+. .+|    +|+++|+.++ +.+.. +.      .....+.|+| ++..|+....|     
T Consensus       175 ~~~~~~~S~P-DG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~------~~~~~~~Wsp-Dg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          175 DVMEVKPAPP-EHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS------GTNGEIVWGP-DHTSLFYVTKDETLRE  246 (751)
T ss_dssp             EEEEEEECTT-TTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE------EECSCCEECS-STTEEEEEEECTTCCE
T ss_pred             EEeeeEecCC-CCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc------CceeeEEEec-CCCEEEEEEECCCCCC
Confidence            67889999 9 777766443 233    5999999988 63211 11      1235788999 66666665554     


Q ss_pred             CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee-cCCCceeeccee--cceEEEee---CCCeEEEecCCCC
Q 022590          122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS-VHSNYVDCNRWL--GDFILSKS---VDNEIVLWEPKMK  195 (294)
Q Consensus       122 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~--~~~l~~~~---~d~~i~iwd~~~~  195 (294)
                      ..|.++++.+....                     ....+. ........+.|+  +++|+..+   ....|.++|+.++
T Consensus       247 ~~v~~~~lgt~~~~---------------------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          247 NKVWRHVMGKLQSE---------------------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EEEEEEETTSCGGG---------------------CEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CEEEEEECCCCchh---------------------cEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            25677777652110                     011111 122233445554  66666544   2346888888765


Q ss_pred             CCCCCCCCceeeeee-ecCCCCeeEEEEcccCCcceEEEEcCC----CeEEEEeccCC-CceeeeeccccccCCCeEEEE
Q 022590          196 EQSPGEGTADILQKY-PVPECDIWFIKFSCDFHYNAAAIGNRE----GKIFVWELQSS-PPVLIARLSHAQSKSPIRQTA  269 (294)
Q Consensus       196 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~-~~~~~~~~~~~~~~~~v~~~~  269 (294)
                      ...     . .+..+ ...........|+. ++ .+++....+    ..|..+++.+. +.... .+.+ .....+..+.
T Consensus       306 ~~~-----~-~~~~l~~~~~~~~~s~~~~~-g~-~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~-li~~-~~~~~l~~~~  375 (751)
T 2xe4_A          306 NAH-----N-TLEIVRPREKGVRYDVQMHG-TS-HLVILTNEGGAVNHKLLIAPRGQPSDWSHV-LVDH-SEDVFMESIA  375 (751)
T ss_dssp             TTC-----C-CEEESSCCCTTCCEEEEEET-TT-EEEEEECTTTCTTCEEEEEETTSTTCCCCE-EECC-CSSEEEEEEE
T ss_pred             CCC-----c-eeEEeecCCCCceEEEeeee-CC-EEEEEeCCCCCCCcEEEEEcCCCcccceee-EECC-CCCcEEEEEE
Confidence            210     0 00111 11223334444333 43 344444333    35666776542 21110 1211 1111345555


Q ss_pred             EccCCCEEEEeccCCcEEEE
Q 022590          270 MSYDGSTILSCCEDGAIWRW  289 (294)
Q Consensus       270 ~s~~~~~l~s~~~dg~i~vw  289 (294)
                      +. .+.++++...+|..++|
T Consensus       376 ~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          376 VR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EC-SSEEEEEEEETTEEEEE
T ss_pred             EE-CCEEEEEEEeCCEEEEE
Confidence            54 23455566777764444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.95  E-value=0.0059  Score=50.98  Aligned_cols=221  Identities=7%  Similarity=-0.099  Sum_probs=117.6

Q ss_pred             CCeEEEEEcCCcc-ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC
Q 022590           32 NGIIRVIDVSNEK-LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  110 (294)
Q Consensus        32 dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~  110 (294)
                      ...|+..++.... ....+...-..+..|+|++.++.++++=...+.|..+++........+..  .--.....|++.+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~--~~~~~P~GlAvD~~   94 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SGLLSPDGLACDWL   94 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC--SSCSCEEEEEEETT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe--CCCCCcCeEEEEec
Confidence            4679999987653 22222223456789999985555555555578888888865432222221  12246889999985


Q ss_pred             CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEee--CCCe
Q 022590          111 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKS--VDNE  186 (294)
Q Consensus       111 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~--~d~~  186 (294)
                      +++++++-...+.|.+.++....                       ........-.....++++  +..|+.+.  ..+.
T Consensus        95 ~~~ly~~d~~~~~I~v~~~dG~~-----------------------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~  151 (619)
T 3s94_A           95 GEKLYWTDSETNRIEVSNLDGSL-----------------------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPK  151 (619)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCS-----------------------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCE
T ss_pred             CCEEEEEeCCCCEEEEEECCCCC-----------------------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCE
Confidence            66666666778899999987621                       111111222334456664  23343333  2356


Q ss_pred             EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeE
Q 022590          187 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR  266 (294)
Q Consensus       187 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  266 (294)
                      |...++.....         .............+++.++.. .+.++-...+.|..+|+..........    .......
T Consensus       152 I~r~~~dG~~~---------~~l~~~~~~~P~Glald~~~~-~LY~aD~~~~~I~~~~~dG~~~~~~~~----~~~~~P~  217 (619)
T 3s94_A          152 IERAGMDGSSR---------FIIINSEIYWPNGLTLDYEEQ-KLYWADAKLNFIHKSNLDGTNRQAVVK----GSLPHPF  217 (619)
T ss_dssp             EEEEETTSCSC---------EEEECSSCSSEEEEEEETTTT-EEEEEETTTCCEEEESSSCCEEC-------------CC
T ss_pred             EEEEECCCCce---------EEEEeCCCCCCcEEEEEccCC-EEEEEeCCCCeEEEecCCCCccEEEEe----CCCCCce
Confidence            66666653321         111112234577899998764 455555667889999987653222211    0111234


Q ss_pred             EEEEccCCCEEEEeccCCcEEEEecC
Q 022590          267 QTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       267 ~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .+++..+ ....+-...+.|...|..
T Consensus       218 gi~~~~~-~ly~td~~~~~V~~~d~~  242 (619)
T 3s94_A          218 ALTLFED-ILYWTDWSTHSILACNKY  242 (619)
T ss_dssp             CEEESSS-EEEEECTTTCSEEEEESS
T ss_pred             EEEEeCC-EEEEecCCCCEEEEEECC
Confidence            5677655 444444456677777653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=0.0045  Score=49.26  Aligned_cols=114  Identities=12%  Similarity=0.140  Sum_probs=69.4

Q ss_pred             eeEEEEEeecCCCceEEEEeec-CC----eEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGI-NG----IIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~-dg----~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      ....++|.  ++|+ +|+.+.. ++    .+.+.+. .+...  ..+.. ......++++|.++.++++-..++.|..++
T Consensus       180 ~P~~ia~d--~~G~-~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~  254 (430)
T 3tc9_A          180 KVRTICWT--HEAD-SMIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYD  254 (430)
T ss_dssp             CEEEEEEC--TTSS-EEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEE
T ss_pred             CcceEEEe--CCCC-EEEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEE
Confidence            34566665  8887 5555443 22    2333443 33322  22222 234577889995666666666778999999


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCc-eEEeeecCCcEEEEeccc
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~~wd~~~  131 (294)
                      ...+........  +.......|+|+| +++ ++++-...+.|..++...
T Consensus       255 ~~~~~~~~~~~~--~~~~~P~gia~~p-dG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          255 FTTQETTPLFTI--QDSGWEFHIQFHP-SGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             TTTTEEEEEEEC--SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCcEEEEEEc--CCCCcceeEEEcC-CCCEEEEEECCCCEEEEEeCCc
Confidence            976654333321  1224578999999 666 556666778899988764

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.94  E-value=0.0097  Score=53.42  Aligned_cols=220  Identities=12%  Similarity=0.049  Sum_probs=124.1

Q ss_pred             CeEEEEEcCCccccceecc-cCcceEEEE---eCCCCCceEEEee----------CCCcEEEEEcCCCceEEEeeccCCC
Q 022590           33 GIIRVIDVSNEKLHKSFVG-HGDSINEIR---TQPLKPSLVVSAS----------KDESVRLWNVQTGICILIFAGAGGH   98 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~-h~~~v~~~~---~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~   98 (294)
                      +.|++.|..+.+.+..+.- ....+.+++   |......+|+.|+          ..|.|.++++..++.....+.  ..
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~--~v  884 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK--EV  884 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE--EE
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE--Ec
Confidence            4688888887776655542 233455544   4432356888876          357899999975433322222  35


Q ss_pred             CCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC-ceeecceecce
Q 022590           99 RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-YVDCNRWLGDF  177 (294)
Q Consensus        99 ~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~  177 (294)
                      +++|++++--  ++.++++  ...++++|++...+..                   .   .....+.. .+..+...+++
T Consensus       885 ~g~v~al~~~--~g~Lla~--ig~~l~vy~l~~~~~L-------------------~---~~~~~~~~i~~~~l~~~~~~  938 (1158)
T 3ei3_A          885 KGAVYSMVEF--NGKLLAS--INSTVRLYEWTTEKEL-------------------R---TECNHYNNIMALYLKTKGDF  938 (1158)
T ss_dssp             SSCEEEEEEE--TTEEEEE--ETTEEEEEEECTTSCE-------------------E---EEEEECCCSCEEEEEEETTE
T ss_pred             CCcCEEEeee--CCEEEEE--cCCEEEEEECCCCceE-------------------E---EEeeccccEEEEEEeccCCE
Confidence            7889998865  4554443  3479999999862110                   0   00111111 12234444889


Q ss_pred             EEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce-----e
Q 022590          178 ILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV-----L  252 (294)
Q Consensus       178 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~  252 (294)
                      +++|..-..+.++..+....     ....+ .-......++++.+-.+.   .++.++.+|.+.+.........     .
T Consensus       939 I~vgD~~~Sv~~~~y~~~~~-----~L~~~-a~D~~~~~vta~~~ld~~---t~l~aD~~gNl~vl~~~~~~~~~~~~~~ 1009 (1158)
T 3ei3_A          939 ILVGDLMRSVLLLAYKPMEG-----NFEEI-ARDFNPNWMSAVEILDDD---NFLGAENAFNLFVCQKDSAATTDEERQH 1009 (1158)
T ss_dssp             EEEEESSBCEEEEEEETTTT-----EEEEE-EECCSCBCEEEEEEEETT---EEEEEETTSEEEEEEECTTCCSTTGGGB
T ss_pred             EEEEEhhheEEEEEEEcCCC-----eEEEE-EeecccccEEEEEEEccC---cEEEEcCCCcEEEEecCCCCCCccccce
Confidence            99988877777655432211     11111 122334567777776554   6788999999999987653210     1


Q ss_pred             eeeccccccCCCeEEEE---EccC---------CCEEEEeccCCcEEEE
Q 022590          253 IARLSHAQSKSPIRQTA---MSYD---------GSTILSCCEDGAIWRW  289 (294)
Q Consensus       253 ~~~~~~~~~~~~v~~~~---~s~~---------~~~l~s~~~dg~i~vw  289 (294)
                      ......-.....|+++.   +.+.         ...++-++.+|.|.+.
T Consensus      1010 L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A         1010 LQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp             EEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred             eeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence            11111112235677765   3332         2347778889988764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.93  E-value=0.0033  Score=47.27  Aligned_cols=193  Identities=10%  Similarity=0.048  Sum_probs=95.6

Q ss_pred             CCceEEEEeecC-----CeEEEEEcCCcc---cc--ceecccCcceEEEEeCCCCCceEEEeeCC-----CcEEEEEcCC
Q 022590           21 DGIPFLVAGGIN-----GIIRVIDVSNEK---LH--KSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQT   85 (294)
Q Consensus        21 ~~~~~l~~~~~d-----g~i~iw~~~~~~---~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~~   85 (294)
                      ++. +++.|+.+     ..+.+||..+.+   -.  ..+......-..+.+   ++.+++.|+.+     ..+.+||+.+
T Consensus        62 ~~~-l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           62 HDR-IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             TTE-EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCE-EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCC
Confidence            455 77777755     468899987765   21  122211112222222   45777777654     3578889877


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEeeecC-----CcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      .+-...-..  .....-.++...  ++.+++.|+.+     ..+.+||+.+..-..        .+             .
T Consensus       138 ~~W~~~~~~--p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~--------~~-------------~  192 (301)
T 2vpj_A          138 DQWSMLGDM--QTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN--------VT-------------P  192 (301)
T ss_dssp             TEEEEEEEC--SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE--------EC-------------C
T ss_pred             CeEEECCCC--CCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe--------CC-------------C
Confidence            654332221  111111222232  56777777765     357788877632110        00             0


Q ss_pred             eecCCCceeecceecceEEEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590          161 ASVHSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       161 ~~~~~~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                      .........++.+++.+++.|+.+     ..+.+||+.+.+       ...+...+........+  ..++  .+++.|+
T Consensus       193 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~~~~--~~~~--~i~v~GG  261 (301)
T 2vpj_A          193 MATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS-------WTTVTSMTTPRCYVGAT--VLRG--RLYAIAG  261 (301)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSCEEE--EETT--EEEEECC
T ss_pred             CCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc-------EEECCCCCCcccceeEE--EECC--EEEEEcC
Confidence            000111112223346677777664     468899987653       12222222222112222  2244  4666666


Q ss_pred             CC-----CeEEEEeccCCCceee
Q 022590          236 RE-----GKIFVWELQSSPPVLI  253 (294)
Q Consensus       236 ~d-----g~i~i~d~~~~~~~~~  253 (294)
                      .+     ..+.+||+++.+....
T Consensus       262 ~~~~~~~~~v~~yd~~~~~W~~~  284 (301)
T 2vpj_A          262 YDGNSLLSSIECYDPIIDSWEVV  284 (301)
T ss_dssp             BCSSSBEEEEEEEETTTTEEEEE
T ss_pred             cCCCcccccEEEEcCCCCeEEEc
Confidence            54     4578888887654333

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.91  E-value=0.0038  Score=47.54  Aligned_cols=199  Identities=11%  Similarity=0.098  Sum_probs=116.5

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCC----Cc---eEEEee-C--CCcEEEEEcC--CCceEEEe
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLK----PS---LVVSAS-K--DESVRLWNVQ--TGICILIF   92 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~---~l~s~~-~--dg~i~vwd~~--~~~~~~~~   92 (294)
                      +++.....+-+.+||+ +++.++.+..  +.++.+..-| +    ++   ++++.. .  +++|++|++.  ++. +..+
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i  116 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM  116 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence            6777777889999999 8888888764  5566666655 2    11   233333 3  5789999773  333 4444


Q ss_pred             ecc--C-CCC-CceeEEEE--ecCCC-ceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           93 AGA--G-GHR-NEVLSVDF--HPSDI-YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        93 ~~~--~-~~~-~~v~~l~~--~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ...  . +.. ..+..+++  +|..+ .++++...+|.+..|++......                ......+..+.. .
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g----------------~~~~~lVR~f~l-g  179 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNG----------------YISGKKVRAFKM-N  179 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS----------------CEEEEEEEEEEC-S
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCC----------------cccceEEEEecC-C
Confidence            210  0 011 56777888  66334 36888888999999999641100                000222333332 3


Q ss_pred             Cceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec--CCCCeeEEEE--cccCCcceEEEEcCCCe
Q 022590          166 NYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKF--SCDFHYNAAAIGNREGK  239 (294)
Q Consensus       166 ~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~--~~~~~~~~l~~~~~dg~  239 (294)
                      ..+..+..+  ...|+.+-++..|..++.+.....    ....+.....  -...+..|++  .+++.+.+++++-.++.
T Consensus       180 sq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~----~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s  255 (355)
T 3amr_A          180 SQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGS----NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS  255 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCS----CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             CCcceEEEcCCCCeEEEecccceEEEEeCCcCCCC----CceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence            456666665  568888888877777774422100    1123333321  1235778887  45554334555557789


Q ss_pred             EEEEecc-CCC
Q 022590          240 IFVWELQ-SSP  249 (294)
Q Consensus       240 i~i~d~~-~~~  249 (294)
                      ..+||.+ +.+
T Consensus       256 ~~Vydr~~~~~  266 (355)
T 3amr_A          256 YAIYDRQGKNK  266 (355)
T ss_dssp             EEEEESSTTCC
T ss_pred             EEEEECCCCCc
Confidence            9999997 444

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.90  E-value=0.0038  Score=47.12  Aligned_cols=176  Identities=5%  Similarity=-0.106  Sum_probs=96.5

Q ss_pred             CCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce---e
Q 022590           98 HRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW---L  174 (294)
Q Consensus        98 ~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~  174 (294)
                      ......++.|++.++.++++.-..++|..||.........   ........             ......+..+.|   +
T Consensus        11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~---~~~~~s~~-------------g~~~~~~sGl~~~~~D   74 (334)
T 2p9w_A           11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV---VIDGASSN-------------GDGEQQMSGLSLLTHD   74 (334)
T ss_dssp             TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE---CCTTTCCS-------------SCCSEEEEEEEESSSS
T ss_pred             cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE---ecCCcccc-------------CCCcceeeEEEEeccC
Confidence            4445678999985566555555799999999874211100   00000000             000012245555   2


Q ss_pred             --cceEEEee-------------CCCeEEEecCC---CCCCCCCCCCceeeee---eec-CCCCeeEEEEcccCCcceEE
Q 022590          175 --GDFILSKS-------------VDNEIVLWEPK---MKEQSPGEGTADILQK---YPV-PECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       175 --~~~l~~~~-------------~d~~i~iwd~~---~~~~~~~~~~~~~~~~---~~~-~~~~i~~~~~~~~~~~~~l~  232 (294)
                        +.++++..             .+..+..||+.   +++.............   ... .......++..++|  +..+
T Consensus        75 ~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G--naYV  152 (334)
T 2p9w_A           75 NSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG--NSYV  152 (334)
T ss_dssp             SCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS--CEEE
T ss_pred             CCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC--CEEE
Confidence              44444332             26789999998   5543110000000000   000 11236778888888  5667


Q ss_pred             EEcCC-CeEEEEeccCCCceeeeeccc--cccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          233 IGNRE-GKIFVWELQSSPPVLIARLSH--AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       233 ~~~~d-g~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +++.. +.|..++...... .......  .......+.|+++|+|+.|++...+|.|..+|++
T Consensus       153 t~s~~~~~I~rV~pdG~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          153 AFALGMPAIARVSADGKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEESSCEEEEECTTSCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             eCCCCCCeEEEEeCCCCEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            67777 7777777665422 2111111  1223447899999999988888779999999875

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.89  E-value=0.0078  Score=50.37  Aligned_cols=223  Identities=6%  Similarity=-0.136  Sum_probs=130.9

Q ss_pred             EEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  103 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  103 (294)
                      +|+.+ ..+.|+..++++......+. ..-..+..|+|++.++.++++-..++.|..+++........+.   .-.....
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~---~g~~~P~   83 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE---FGLDYPE   83 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSCCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe---CCCCCcc
Confidence            44444 45689999998755433322 1234678999999556666666678899999986554433333   1224577


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEe
Q 022590          104 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK  181 (294)
Q Consensus       104 ~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~  181 (294)
                      .|++.+.+++++++-...+.|.+.++.....                       .......-.....++++  ...|+..
T Consensus        84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-----------------------~~l~~~~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-----------------------QVLVWKDLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSTTC-----------------------EEEECSSCCCEEEEEEETTTTEEEEE
T ss_pred             eEEEEeCCCEEEEEECCCCEEEEEecCCCcE-----------------------EEEEeCCCCCcccEEEccCCCeEEEe
Confidence            8999875667667767778899998875211                       00111112233555555  2334433


Q ss_pred             e--CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccc
Q 022590          182 S--VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA  259 (294)
Q Consensus       182 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  259 (294)
                      .  ..+.|...++.....          ..+.........+++.+++. .+..+-...+.|..+|+........   .  
T Consensus       141 D~g~~~~I~r~~~dG~~~----------~~l~~~~~~P~GlalD~~~~-~LY~aD~~~~~I~~~d~dG~~~~v~---~--  204 (628)
T 4a0p_A          141 EWGGKPKIDRAAMDGSER----------TTLVPNVGRANGLTIDYAKR-RLYWTDLDTNLIESSNMLGLNREVI---A--  204 (628)
T ss_dssp             ECSSSCEEEEEETTSCSC----------EEEECSCSSEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEE---E--
T ss_pred             CCCCCCEEEEEeCCCCce----------EEEECCCCCcceEEEccccC-EEEEEECCCCEEEEEcCCCCceEEe---e--
Confidence            3  246777777654321          11112345678899999764 4455556678899999977543221   1  


Q ss_pred             ccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          260 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       260 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ........+++.. +.+..+-...+.|...|.
T Consensus       205 ~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          205 DDLPHPFGLTQYQ-DYIYWTDWSRRSIERANK  235 (628)
T ss_dssp             ECCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             ccCCCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence            1112345777765 444445455677777764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.87  E-value=0.0043  Score=46.79  Aligned_cols=196  Identities=9%  Similarity=0.040  Sum_probs=97.4

Q ss_pred             CCceEEEEeecC----CeEEEEEcCCccccc--eecccCcceEEEEeCCCCCceEEEeeCC------CcEEEEEcCCCce
Q 022590           21 DGIPFLVAGGIN----GIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGIC   88 (294)
Q Consensus        21 ~~~~~l~~~~~d----g~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~   88 (294)
                      ++. +++.|+.+    ..+.+||..+++-..  .+......-..+.+   ++.+++.|+.+      ..+.+||..+.+-
T Consensus        55 ~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           55 DNV-VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             TTE-EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             CCE-EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            455 77777754    678889987764322  22211111222222   45777777765      4588899887654


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeec---------CCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM---------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      ... ... .....-.++...  ++.+++.|+.         -..+.+||+.+..-.        ..+             
T Consensus       131 ~~~-~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~--------~~~-------------  185 (306)
T 3ii7_A          131 HTK-PSM-LTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT--------ELC-------------  185 (306)
T ss_dssp             EEE-CCC-SSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEE--------EEC-------------
T ss_pred             EeC-CCC-cCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEE--------ECC-------------
Confidence            332 211 111111222232  5677777764         344778888763211        000             


Q ss_pred             EeecCCCceeecceecceEEEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          160 IASVHSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                      ........-.++...+.+++.|+.+     ..+.+||+.+.+       ...+...+........+.+  ++  .+++.|
T Consensus       186 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~~~--~~--~i~v~G  254 (306)
T 3ii7_A          186 PMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE-------WKMVSPMPWKGVTVKCAAV--GS--IVYVLA  254 (306)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTE-------EEECCCCSCCBSCCEEEEE--TT--EEEEEE
T ss_pred             CccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCc-------EEECCCCCCCccceeEEEE--CC--EEEEEe
Confidence            0000011111222236666666653     458889987653       1122222222222222222  33  466777


Q ss_pred             cCC-----CeEEEEeccCCCceeeeec
Q 022590          235 NRE-----GKIFVWELQSSPPVLIARL  256 (294)
Q Consensus       235 ~~d-----g~i~i~d~~~~~~~~~~~~  256 (294)
                      +.+     ..+.+||+.+.+......+
T Consensus       255 G~~~~~~~~~~~~yd~~~~~W~~~~~~  281 (306)
T 3ii7_A          255 GFQGVGRLGHILEYNTETDKWVANSKV  281 (306)
T ss_dssp             CBCSSSBCCEEEEEETTTTEEEEEEEE
T ss_pred             CcCCCeeeeeEEEEcCCCCeEEeCCCc
Confidence            643     5688999988765444433

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.84  E-value=0.0052  Score=46.90  Aligned_cols=232  Identities=9%  Similarity=0.029  Sum_probs=116.3

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec---ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      ...+.++.+.  + +. .++ ++..|.|.. ..+.++.-....   .+...+..+.+.+ ++..++++ .+|.|.. ..+
T Consensus        79 ~~~~~~i~~~--~-~~-~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~D  149 (327)
T 2xbg_A           79 DYRFNSVSFQ--G-NE-GWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKD  149 (327)
T ss_dssp             CCEEEEEEEE--T-TE-EEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESS
T ss_pred             CccEEEEEec--C-Ce-EEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcC
Confidence            4478888875  5 44 444 455665544 333343322221   2335577888776 55555554 4564422 223


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEE-EeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI-WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .++.-.....  +....+..+.+.| ++.+++++. +|.+.. .|-.. ..                    -.++  ...
T Consensus       150 gG~tW~~~~~--~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG-~t--------------------W~~~--~~~  202 (327)
T 2xbg_A          150 SGKNWQALVQ--EAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQ-TA--------------------WEPH--NRT  202 (327)
T ss_dssp             TTSSEEEEEC--SCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTC-SS--------------------CEEE--ECC
T ss_pred             CCCCCEEeec--CCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCC-Cc--------------------eeEC--CCC
Confidence            3544444432  3566789999998 777666554 454433 33211 00                    0000  011


Q ss_pred             CCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec----CCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          164 HSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV----PECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       164 ~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ....+..+.+. ...++.++.+|.+++.+...++         .......    ....+..+.+.+++  .+++++ .+|
T Consensus       203 ~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~---------tW~~~~~~~~~~~~~~~~v~~~~~~--~~~~~g-~~g  270 (327)
T 2xbg_A          203 TSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSE---------NWGELLSPLRRNSVGFLDLAYRTPN--EVWLAG-GAG  270 (327)
T ss_dssp             SSSCEEEEEECTTSCEEEEETTTEEEEEETTEEE---------EECCCBCTTSSCCSCEEEEEESSSS--CEEEEE-STT
T ss_pred             CCCccceeEECCCCCEEEEeCCceEEEecCCCCC---------eeEeccCCcccCCcceEEEEecCCC--EEEEEe-CCC
Confidence            23344555554 3345555667887776322111         0111111    12347778888765  455554 466


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      .+ ++..+.++. .............+.++.|.+++. ++.++.+|.|.-++
T Consensus       271 ~i-~~S~DgG~t-W~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          271 AL-LCSQDGGQT-WQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             CE-EEESSTTSS-CEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             eE-EEeCCCCcc-cEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            66 344444431 221111111234578888876554 55666889776654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.84  E-value=0.0052  Score=46.60  Aligned_cols=226  Identities=9%  Similarity=0.001  Sum_probs=107.5

Q ss_pred             EEEEeecCCeEEEEEcCCccccc-eecccCcceEEEEeCCCCCceEEEeeC----C-------CcEEEEEcCCCceEEEe
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHK-SFVGHGDSINEIRTQPLKPSLVVSASK----D-------ESVRLWNVQTGICILIF   92 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~s~~~----d-------g~i~vwd~~~~~~~~~~   92 (294)
                      +++.|+  ..+.+||..+++-.. .+..........+... ++.+++.|+.    +       ..+..||..+++-.. +
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-M   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-C
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-C
Confidence            455665  579999998876322 1111111222222233 5677777773    1       126778887765322 2


Q ss_pred             eccCCCCCceeEEEEecCCCceEEeeecC--------CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           93 AGAGGHRNEVLSVDFHPSDIYRIASCGMD--------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        93 ~~~~~~~~~v~~l~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      ... .....-.+++..  ++.+++.|+.+        ..+.+||+.+..-        ...+.             +...
T Consensus        83 ~~~-p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W--------~~~~~-------------~p~~  138 (315)
T 4asc_A           83 PPL-PSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW--------GESDP-------------LPYV  138 (315)
T ss_dssp             CCB-SSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEE--------EECCC-------------CSSC
T ss_pred             CCC-CcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcE--------eECCC-------------CCCc
Confidence            211 011111122232  56777777743        3578888776321        11000             0001


Q ss_pred             CCceeecceecceEEEeeC-C-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          165 SNYVDCNRWLGDFILSKSV-D-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       165 ~~~i~~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ...-.++...+.+++.|+. +     ..+.+||+.+.+       ...+...+........+  ..++  .+++.|+.++
T Consensus       139 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~~~--~~~~--~iyv~GG~~~  207 (315)
T 4asc_A          139 VYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFE-------WKELAPMQTARSLFGAT--VHDG--RIIVAAGVTD  207 (315)
T ss_dssp             CBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTE-------EEECCCCSSCCBSCEEE--EETT--EEEEEEEECS
T ss_pred             ccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCe-------EEECCCCCCchhceEEE--EECC--EEEEEeccCC
Confidence            1111122234666677765 2     468889987653       11121122111111222  2233  4666665543


Q ss_pred             -----eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCC--------------cEEEEecCC
Q 022590          239 -----KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDG--------------AIWRWDAIP  293 (294)
Q Consensus       239 -----~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg--------------~i~vw~~~~  293 (294)
                           .+.+||+.+.+........  .....-..+.  -++++++.|+.++              .+.+||+++
T Consensus       208 ~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  277 (315)
T 4asc_A          208 TGLTSSAEVYSITDNKWAPFEAFP--QERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE  277 (315)
T ss_dssp             SSEEEEEEEEETTTTEEEEECCCS--SCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTT
T ss_pred             CCccceEEEEECCCCeEEECCCCC--CcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCC
Confidence                 5888999887544433322  1111122222  2667777777642              366777654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.77  E-value=0.0066  Score=45.84  Aligned_cols=173  Identities=9%  Similarity=-0.019  Sum_probs=96.4

Q ss_pred             ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE-eecc---CCCCCceeEEEE---ecCCCceEEeeec-------
Q 022590           55 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI-FAGA---GGHRNEVLSVDF---HPSDIYRIASCGM-------  120 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~---~~~~~~v~~l~~---~~~~~~~l~~~~~-------  120 (294)
                      --.+++|.+.++.++++.-..++|..|+...+..... +...   ......+..|.|   .| ++.++++...       
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence            3457889885565666655899999999976644333 2110   001124689999   68 6777765431       


Q ss_pred             ------CCcEEEEecc---ccccccccceeecCCCCCCCCceeeeceEEeec-CCCceeeccee--cceEEEeeCC-CeE
Q 022590          121 ------DNTVKIWSMK---EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKSVD-NEI  187 (294)
Q Consensus       121 ------dg~i~~wd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~l~~~~~d-~~i  187 (294)
                            +..+..+|+.   +.+......+...           ........+ -......+..+  |+..++++.. +.|
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~-----------~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I  161 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKV-----------QDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAI  161 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHH-----------HHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEE
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccc-----------cccccccccccccCCceeEECCCCCEEEeCCCCCCeE
Confidence                  6779999988   4221110000000           000000000 01124455554  7888888877 887


Q ss_pred             EEecCCCCCCCCCCCCceeeeee--ecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          188 VLWEPKMKEQSPGEGTADILQKY--PVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       188 ~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      ...+......      .......  .......+.+++.|++.  .|++....|.+..+|+..
T Consensus       162 ~rV~pdG~~~------~~~~~~~~~~~~~~G~nGIv~~pdg~--~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          162 ARVSADGKTV------STFAWESGNGGQRPGYSGITFDPHSN--KLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEECTTSCCE------EEEEECCCCSSSCCSCSEEEEETTTT--EEEEESSSSSEEEEECSS
T ss_pred             EEEeCCCCEE------eeeeecCCCcccccCcceEEEeCCCC--EEEEEcCCCeEEEEcCCC
Confidence            7777654321      0000011  11223477899999994  565555599999999984

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.73  E-value=0.015  Score=48.66  Aligned_cols=200  Identities=9%  Similarity=-0.024  Sum_probs=106.4

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc-cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL-HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      ...+++|.  +.+..++.+-...+.|..++++.... ...+...-.....|++.+.+++++++-...+.|.+.++.....
T Consensus        41 ~~~~ld~~--~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           41 DAAAVDFV--FSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CEEEEEEE--TTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ceEEEEEE--eCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            45567776  64542455555567888888765432 2223322356789999885556666666788999999865443


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      ...+.   ..-.....|++.|.++.++++-- ..+.|...++....                       ........-..
T Consensus       119 ~~l~~---~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-----------------------~~~l~~~~~~~  172 (619)
T 3s94_A          119 KVLFW---QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-----------------------RFIIINSEIYW  172 (619)
T ss_dssp             EEEEC---SSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-----------------------CEEEECSSCSS
T ss_pred             EEEEe---CCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-----------------------eEEEEeCCCCC
Confidence            33332   23445789999995566555542 23566666655311                       01111112233


Q ss_pred             eeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          168 VDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       168 i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      ...++++  +. +.++=...+.|..+|+.......      ...   ........+++..+   .+..+-...+.|...|
T Consensus       173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~------~~~---~~~~~P~gi~~~~~---~ly~td~~~~~V~~~d  240 (619)
T 3s94_A          173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA------VVK---GSLPHPFALTLFED---ILYWTDWSTHSILACN  240 (619)
T ss_dssp             EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------------CCCEEESSS---EEEEECTTTCSEEEEE
T ss_pred             CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE------EEe---CCCCCceEEEEeCC---EEEEecCCCCEEEEEE
Confidence            4556665  33 44444456778888886533211      111   01112234555443   2455555667788888


Q ss_pred             ccCCC
Q 022590          245 LQSSP  249 (294)
Q Consensus       245 ~~~~~  249 (294)
                      ..+++
T Consensus       241 ~~tg~  245 (619)
T 3s94_A          241 KYTGE  245 (619)
T ss_dssp             SSSCC
T ss_pred             CCCCc
Confidence            76553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.70  E-value=0.016  Score=48.45  Aligned_cols=198  Identities=7%  Similarity=-0.112  Sum_probs=116.4

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      ....++|.  +.+..+..+-..++.|+.++++.......+.........|++.+.+++++++-...+.|.+.++......
T Consensus        38 ~~~~l~~d--~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~  115 (628)
T 4a0p_A           38 EASALDFD--VTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ  115 (628)
T ss_dssp             CEEEEEEE--TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE
T ss_pred             ceEEEEEE--CCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE
Confidence            45577776  6555356666678899999886544333333223456788888745666666667788999998654433


Q ss_pred             EEeeccCCCCCceeEEEEecCCCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           90 LIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        90 ~~~~~~~~~~~~v~~l~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      ..+.   ..-.....|++.|..+.++.+- +..+.|...++....                        ...+...-...
T Consensus       116 ~l~~---~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~------------------------~~~l~~~~~~P  168 (628)
T 4a0p_A          116 VLVW---KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE------------------------RTTLVPNVGRA  168 (628)
T ss_dssp             EEEC---SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS------------------------CEEEECSCSSE
T ss_pred             EEEe---CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc------------------------eEEEECCCCCc
Confidence            2232   2334578999999556655553 224667777665411                        11111123345


Q ss_pred             eeccee--cceE-EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          169 DCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       169 ~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      ..++++  ++.| ++-...+.|..+|+.....       ..+   .........+++..+   .++.+-...+.|...|.
T Consensus       169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-------~v~---~~~l~~P~glav~~~---~ly~tD~~~~~I~~~dk  235 (628)
T 4a0p_A          169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-------EVI---ADDLPHPFGLTQYQD---YIYWTDWSRRSIERANK  235 (628)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEE---EECCSCEEEEEEETT---EEEEEETTTTEEEEEET
T ss_pred             ceEEEccccCEEEEEECCCCEEEEEcCCCCce-------EEe---eccCCCceEEEEECC---EEEEecCCCCEEEEEEC
Confidence            566665  3444 4445567899999865431       122   122234556776542   35555556788888887


Q ss_pred             cCCC
Q 022590          246 QSSP  249 (294)
Q Consensus       246 ~~~~  249 (294)
                      .+++
T Consensus       236 ~tg~  239 (628)
T 4a0p_A          236 TSGQ  239 (628)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            6554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.68  E-value=0.0091  Score=44.89  Aligned_cols=190  Identities=12%  Similarity=0.119  Sum_probs=92.8

Q ss_pred             CCceEEEEeecC-----CeEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCCC-----cEEEEEcCCCce
Q 022590           21 DGIPFLVAGGIN-----GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKDE-----SVRLWNVQTGIC   88 (294)
Q Consensus        21 ~~~~~l~~~~~d-----g~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~   88 (294)
                      ++. +++.|+.+     ..+.+||..+.+-.  ..+......-..+.+   ++.+++.|+.++     .+.+||+.+.+-
T Consensus        61 ~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~W  136 (302)
T 2xn4_A           61 AGL-VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL---NGLLYAVGGFDGSTGLSSVEAYNIKSNEW  136 (302)
T ss_dssp             TTE-EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred             CCE-EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE---CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence            455 77777754     35788888765422  122211112222222   457777777653     477888876654


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecC-------CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      ... ... .....-.+++..  ++.+++.|+.+       ..+.+||+.+..-..        .+             ..
T Consensus       137 ~~~-~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~--------~~-------------~~  191 (302)
T 2xn4_A          137 FHV-APM-NTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY--------IA-------------EM  191 (302)
T ss_dssp             EEE-CCC-SSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEE--------EC-------------CC
T ss_pred             eec-CCC-CCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE--------CC-------------CC
Confidence            332 211 111111223332  56777777653       347788877632110        00             00


Q ss_pred             ecCCCceeecceecceEEEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          162 SVHSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       162 ~~~~~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      ........++.+++.+++.|+.+     ..+.+||+.+.+       ...+...+....... + ...++  .+++.|+.
T Consensus       192 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~~~~~~~r~~~~-~-~~~~~--~i~v~GG~  260 (302)
T 2xn4_A          192 STRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNA-------WRQVADMNMCRRNAG-V-CAVNG--LLYVVGGD  260 (302)
T ss_dssp             SSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTE-------EEEECCCSSCCBSCE-E-EEETT--EEEEECCB
T ss_pred             ccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCC-------EeeCCCCCCccccCe-E-EEECC--EEEEECCc
Confidence            00111112223346677777654     368899987653       112222221111111 2 22234  46666665


Q ss_pred             C-----CeEEEEeccCCCc
Q 022590          237 E-----GKIFVWELQSSPP  250 (294)
Q Consensus       237 d-----g~i~i~d~~~~~~  250 (294)
                      +     ..+.+||+.+.+.
T Consensus       261 ~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          261 DGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             CSSSBCCCEEEEETTTTEE
T ss_pred             CCCcccccEEEEcCCCCeE
Confidence            4     3488999988753

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.58  E-value=0.013  Score=44.26  Aligned_cols=193  Identities=9%  Similarity=0.063  Sum_probs=93.5

Q ss_pred             CCceEEEEeec----C-----CeEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCC-----CcEEEEEcC
Q 022590           21 DGIPFLVAGGI----N-----GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD-----ESVRLWNVQ   84 (294)
Q Consensus        21 ~~~~~l~~~~~----d-----g~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----g~i~vwd~~   84 (294)
                      ++. +++.|+.    +     ..+.+||..+.+-.  ..+......-..+.+   ++.+++.|+.+     ..+.+||+.
T Consensus        70 ~~~-lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGL-LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTE-EEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETT
T ss_pred             CCE-EEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCC
Confidence            455 6777765    2     45788888765422  122211112222222   45677777644     357888987


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC-----CcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD-----NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      +.+-... ... .....-.+++..  ++.+++.|+.+     ..+.+||+.+..-        ...+.            
T Consensus       146 ~~~W~~~-~~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--------~~~~~------------  201 (308)
T 1zgk_A          146 RDEWHLV-APM-LTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW--------RMITA------------  201 (308)
T ss_dssp             TTEEEEC-CCC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE--------EECCC------------
T ss_pred             CCeEeEC-CCC-CccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE--------eeCCC------------
Confidence            7653322 111 011111222232  56777777765     4577888766321        11100            


Q ss_pred             EeecCCCceeecceecceEEEeeCC-----CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE
Q 022590          160 IASVHSNYVDCNRWLGDFILSKSVD-----NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG  234 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~  234 (294)
                       .......-.++.+++.+++.|+.+     ..+.+||+.+.+       ...+...+....... +.. .++  .+++.|
T Consensus       202 -~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-------W~~~~~~p~~r~~~~-~~~-~~~--~i~v~G  269 (308)
T 1zgk_A          202 -MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETET-------WTFVAPMKHRRSALG-ITV-HQG--RIYVLG  269 (308)
T ss_dssp             -CSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE-------EEECCCCSSCCBSCE-EEE-ETT--EEEEEC
T ss_pred             -CCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCc-------EEECCCCCCCccceE-EEE-ECC--EEEEEc
Confidence             000111112223346677777654     468899987653       112222222111112 222 233  466666


Q ss_pred             cCC-----CeEEEEeccCCCceee
Q 022590          235 NRE-----GKIFVWELQSSPPVLI  253 (294)
Q Consensus       235 ~~d-----g~i~i~d~~~~~~~~~  253 (294)
                      +.+     ..+.+||+.+.+....
T Consensus       270 G~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          270 GYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             CBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             CcCCCcccceEEEEcCCCCEEeec
Confidence            643     4578888887754433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.58  E-value=0.014  Score=44.28  Aligned_cols=225  Identities=12%  Similarity=0.102  Sum_probs=105.5

Q ss_pred             EEEEeecCCeEEEEEcCCccccc-eecc-cCcceEEEEeCCCCCceEEEeeC----CC-------cEEEEEcCCCceEEE
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHK-SFVG-HGDSINEIRTQPLKPSLVVSASK----DE-------SVRLWNVQTGICILI   91 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~-~~~~-h~~~v~~~~~~~~~~~~l~s~~~----dg-------~i~vwd~~~~~~~~~   91 (294)
                      +++.|+.  .+..||..+++-.. .+.. ....-.+++ .. ++.+++.|+.    ++       .+..||..+.+-.. 
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~-~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-   92 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIV-TQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVG-   92 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEE-CS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEE-
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEE-EE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEE-
Confidence            5556653  48899988776432 1111 111112333 33 5677777773    12       16678887665432 


Q ss_pred             eeccCCCCCceeEEEEecCCCceEEeeecC-------CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           92 FAGAGGHRNEVLSVDFHPSDIYRIASCGMD-------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        92 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      +........ -.+++..  ++.+++.|+.+       ..+.+||+.+..-.        ..+..        +. ....|
T Consensus        93 ~~~~p~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~--------~~~~~--------p~-~r~~~  152 (318)
T 2woz_A           93 LPPLPSARC-LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS--------EVKNL--------PI-KVYGH  152 (318)
T ss_dssp             CSCBSSCBC-SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE--------EECCC--------SS-CEESC
T ss_pred             CCCCCcccc-ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEe--------ECCCC--------CC-ccccc
Confidence            221101111 1222322  56777777764       24677777653211        00000        00 01112


Q ss_pred             CCceeecceecceEEEeeC------CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC-
Q 022590          165 SNYVDCNRWLGDFILSKSV------DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE-  237 (294)
Q Consensus       165 ~~~i~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-  237 (294)
                      .    ++...+.+++.|+.      -..+.+||+.+.+       ...+...+....... ++. .++  .+++.|+.+ 
T Consensus       153 ~----~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-------W~~~~~~p~~r~~~~-~~~-~~~--~iyv~GG~~~  217 (318)
T 2woz_A          153 N----VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGD-------WKDLAPMKTPRSMFG-VAI-HKG--KIVIAGGVTE  217 (318)
T ss_dssp             E----EEEETTEEEEECCEESSSCBCCCEEEEETTTTE-------EEEECCCSSCCBSCE-EEE-ETT--EEEEEEEEET
T ss_pred             E----EEEECCEEEEEcCCCCCCCccceEEEEcCCCCE-------EEECCCCCCCcccce-EEE-ECC--EEEEEcCcCC
Confidence            1    22234666666654      2358899987653       122222222111112 222 233  455556532 


Q ss_pred             ----CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccC--------------CcEEEEecCC
Q 022590          238 ----GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCED--------------GAIWRWDAIP  293 (294)
Q Consensus       238 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d--------------g~i~vw~~~~  293 (294)
                          ..+.+||+.+.+......++.  ....-..+  ..++++++.|+.+              ..+.+||+++
T Consensus       218 ~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~  287 (318)
T 2woz_A          218 DGLSASVEAFDLKTNKWEVMTEFPQ--ERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK  287 (318)
T ss_dssp             TEEEEEEEEEETTTCCEEECCCCSS--CCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT
T ss_pred             CCccceEEEEECCCCeEEECCCCCC--cccceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC
Confidence                357789998876444433321  11111222  2356777777754              3477888764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.50  E-value=0.022  Score=44.73  Aligned_cols=218  Identities=16%  Similarity=0.169  Sum_probs=124.4

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCC
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  112 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  112 (294)
                      ..|.|.|+.++..+.+-.-   .--+.-.+| ..+.+|.-. ..++.|+|+++.+.+..+.    ....|.--.|-.  .
T Consensus        48 ~~vvIiDl~~~~~~~rrpi---~AdsAIMnP-~~~iiALra-g~~lQiFnle~K~klks~~----~~e~VvfWkWis--~  116 (494)
T 1bpo_A           48 AQVVIIDMNDPSNPIRRPI---SADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHT----MTDDVTFWKWIS--L  116 (494)
T ss_dssp             CEEEEEETTSTTSCEEEEC---CCSEEEECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEE----CSSCCCEEEEEE--T
T ss_pred             CeEEEEECCCCCcceeccc---ccceeeeCC-CCcEEEEec-CCeEEEEchHHhhhhccee----cCCCceEEEecC--C
Confidence            4788888877654422211   112334577 556666554 6899999999999998887    566788888874  4


Q ss_pred             ceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC----ceeeccee--cceEEEee----
Q 022590          113 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN----YVDCNRWL--GDFILSKS----  182 (294)
Q Consensus       113 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~--~~~l~~~~----  182 (294)
                      +.|+-.+ +..|+-|++...                      ..|...+..|..    .|.....+  .++++..+    
T Consensus       117 ~~l~lVT-~taVyHWsi~~~----------------------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~  173 (494)
T 1bpo_A          117 NTVALVT-DNAVYHWSMEGE----------------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  173 (494)
T ss_dssp             TEEEEEC-SSEEEEEESSSS----------------------CCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEE
T ss_pred             CeEEEEc-CCeeEEecccCC----------------------CCchhheecchhcccceEEEEEECCCCCeEEEEeeccc
Confidence            4455555 468999999751                      123333333322    12222222  44444332    


Q ss_pred             ---CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC---CCeEEEEeccCC---Ccee-
Q 022590          183 ---VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---EGKIFVWELQSS---PPVL-  252 (294)
Q Consensus       183 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~---~~~~-  252 (294)
                         -.|.+.+|..+.......+++......+......-.+         .+++.+..   .+.+++.++...   .+.. 
T Consensus       174 ~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~---------~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~  244 (494)
T 1bpo_A          174 QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEES---------TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP  244 (494)
T ss_dssp             TTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEE---------EEEEEEECSTTCCEEEEEECSCCCTTCCCCC
T ss_pred             CCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCc---------eEEEEEEecCCCcEEEEEEcCCCccCCCCcc
Confidence               2477899998876433333333333333222211111         12222222   378999998543   1111 


Q ss_pred             e--e--eccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          253 I--A--RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       253 ~--~--~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .  .  .++......--.++..++.-..+..-+.-|.|++||+++
T Consensus       245 kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleT  289 (494)
T 1bpo_A          245 KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET  289 (494)
T ss_dssp             CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred             ceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccc
Confidence            1  1  111112234456788999888899999999999999986

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=97.45  E-value=0.023  Score=43.84  Aligned_cols=94  Identities=13%  Similarity=0.079  Sum_probs=46.2

Q ss_pred             CCceEEEEeec-CCeEEEEEcCC--cc--ccceec-ccCcceEEEEeCCCCCceEEEeeC-C---------CcEEEEEcC
Q 022590           21 DGIPFLVAGGI-NGIIRVIDVSN--EK--LHKSFV-GHGDSINEIRTQPLKPSLVVSASK-D---------ESVRLWNVQ   84 (294)
Q Consensus        21 ~~~~~l~~~~~-dg~i~iw~~~~--~~--~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~-d---------g~i~vwd~~   84 (294)
                      +++ +++.|+. ...+.+||..+  .+  .+..+. .....-..+.+   ++.+++.|+. +         ..+.+||+.
T Consensus        19 ~~~-iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~   94 (357)
T 2uvk_A           19 NDT-VYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK   94 (357)
T ss_dssp             TTE-EEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred             CCE-EEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence            555 6666654 45788888863  22  222222 11111122222   4567777776 2         468889987


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD  121 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d  121 (294)
                      +.+-... .........-.++.. . ++.+++.|+.+
T Consensus        95 ~~~W~~~-~~~~p~~r~~~~~~~-~-~~~iyv~GG~~  128 (357)
T 2uvk_A           95 TNSWVKL-MSHAPMGMAGHVTFV-H-NGKAYVTGGVN  128 (357)
T ss_dssp             TTEEEEC-SCCCSSCCSSEEEEE-E-TTEEEEEECCC
T ss_pred             CCcEEEC-CCCCCcccccceEEE-E-CCEEEEEeCcC
Confidence            7653322 211101111112222 3 67788888754

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.45  E-value=0.022  Score=43.48  Aligned_cols=231  Identities=9%  Similarity=-0.037  Sum_probs=111.8

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee----cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF----VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      ...+.++.+.  +++. .++ .+.+|.| +...+.++.-...    ......+.+|.+.+  +..++ ++.++.|.. ..
T Consensus        35 ~~~~~~v~~~--~~~~-~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~--~~~~~-~g~~g~i~~-S~  105 (327)
T 2xbg_A           35 TATILDMSFI--DRHH-GWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG--NEGWI-VGEPPIMLH-TT  105 (327)
T ss_dssp             SSCEEEEEES--SSSC-EEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET--TEEEE-EEETTEEEE-ES
T ss_pred             CCcEEEEEEC--CCCc-EEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC--CeEEE-EECCCeEEE-EC
Confidence            3567888775  5555 555 4557765 3333434321221    12245789999976  34444 455665433 33


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEE-EeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI-WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      +.|+.-........+...+..+.+.+ ++..++++ .+|.|.. .|--..   .                   ..  ...
T Consensus       106 DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S~DgG~t---W-------------------~~--~~~  159 (327)
T 2xbg_A          106 DGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRTKDSGKN---W-------------------QA--LVQ  159 (327)
T ss_dssp             STTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEESSTTSS---E-------------------EE--EEC
T ss_pred             CCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEEcCCCCC---C-------------------EE--eec
Confidence            34554444332112335578888876 66655554 4554422 221110   0                   00  011


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeE-EEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCe
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEI-VLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGK  239 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~  239 (294)
                      .....+..+.+.  +.+++.+ .+|.+ +-.|-. +.      ....+.  ......+..+.+.+++  .++ ..+.+|.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~g-G~------tW~~~~--~~~~~~~~~~~~~~~g--~~~-~~~~~G~  226 (327)
T 2xbg_A          160 EAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPG-QT------AWEPHN--RTTSRRLHNMGFTPDG--RLW-MIVNGGK  226 (327)
T ss_dssp             SCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTT-CS------SCEEEE--CCSSSCEEEEEECTTS--CEE-EEETTTE
T ss_pred             CCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCC-CC------ceeECC--CCCCCccceeEECCCC--CEE-EEeCCce
Confidence            223345555554  4455544 44444 334421 11      122221  1234567788888876  344 4556787


Q ss_pred             EEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590          240 IFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW  287 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  287 (294)
                      +++.+...++.-.............+.++++.+++.+++++. +|.|.
T Consensus       227 ~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~  273 (327)
T 2xbg_A          227 IAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALL  273 (327)
T ss_dssp             EEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCEE
T ss_pred             EEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeEE
Confidence            777642212110001111001223588999998887777664 66553

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.43  E-value=0.025  Score=43.70  Aligned_cols=102  Identities=19%  Similarity=0.114  Sum_probs=58.1

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc-cccee---cccCcceEEEEeCCC---CCceEEEeeC---C----
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK-LHKSF---VGHGDSINEIRTQPL---KPSLVVSASK---D----   75 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~---~~h~~~v~~~~~~~~---~~~~l~s~~~---d----   75 (294)
                      .-..++|.  |+|+  |+++..+|.|++++ .+++ .+..+   .........|+++|+   ++.++++-+.   +    
T Consensus        30 ~P~~ia~~--pdG~--l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           30 VPWSIAPL--GGGR--YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CEEEEEEE--ETTE--EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCeEEEEc--CCCe--EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            34677776  8897  55556669999997 3444 22211   112356789999993   3555454432   3    


Q ss_pred             CcEEEEEcCCC--c-----eE-EEeeccCCCCCceeEEEEecCCCceEEeee
Q 022590           76 ESVRLWNVQTG--I-----CI-LIFAGAGGHRNEVLSVDFHPSDIYRIASCG  119 (294)
Q Consensus        76 g~i~vwd~~~~--~-----~~-~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~  119 (294)
                      ..|..++....  .     .+ ..+.....|  ....|.|.| ++.++++.+
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h--~~~~l~~~p-DG~Lyvt~G  153 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIH--NGGRIRFGP-DGMLYITTG  153 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCSSC--CCCCEEECT-TSCEEEECC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCCCc--CCceEEECC-CCcEEEEEC
Confidence            56777776543  1     11 112211123  346799999 777666644

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.38  E-value=0.033  Score=43.78  Aligned_cols=233  Identities=10%  Similarity=0.118  Sum_probs=133.2

Q ss_pred             cCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC-CceEEEeeccCC
Q 022590           19 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT-GICILIFAGAGG   97 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~   97 (294)
                      +|..+ .+|.=. ..++.|+|+++.+.++.+.-. ..|.-=.|-.  .+.|+-.+. ..|.-|++.. ..+.+.|.....
T Consensus        74 nP~~~-iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~  147 (494)
T 1bpo_A           74 NPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSS  147 (494)
T ss_dssp             CSSSS-CEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEECS-SEEEEEESSSSCCCEEEEECCGG
T ss_pred             CCCCc-EEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEcC-CeeEEecccCCCCchhheecchh
Confidence            56666 566554 679999999999888887754 4566666654  344554443 5799999974 345566653100


Q ss_pred             -CCCceeEEEEecCCCceEEeee-------cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCcee
Q 022590           98 -HRNEVLSVDFHPSDIYRIASCG-------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  169 (294)
Q Consensus        98 -~~~~v~~l~~~~~~~~~l~~~~-------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (294)
                       ....|..-..++ +...++..+       ..|.+.+|..+..                        .-..+.+|.....
T Consensus       148 L~~~QIInY~~d~-~~kW~~l~GI~~~~~~v~G~mQLYS~er~------------------------~sQ~ieGhaa~F~  202 (494)
T 1bpo_A          148 LAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRK------------------------VSQPIEGHAASFA  202 (494)
T ss_dssp             GTTCEEEEEEECT-TSSEEEEEEEEEETTEEEEEEEEEESTTC------------------------CEEEECCSEEEEE
T ss_pred             cccceEEEEEECC-CCCeEEEEeecccCCcccceEEEeecccc------------------------ccchheeeeeeeE
Confidence             124577777777 555444332       3477888888762                        2334455554443


Q ss_pred             ecceec-----ceEEEeeC---CCeEEEecCCCCC-CCCCCCCceeeee-ee--cCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          170 CNRWLG-----DFILSKSV---DNEIVLWEPKMKE-QSPGEGTADILQK-YP--VPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       170 ~~~~~~-----~~l~~~~~---d~~i~iwd~~~~~-~~~~~~~~~~~~~-~~--~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      .+...|     ..+..+..   .+.+++-++.... ..... ......- ++  ....-..++..++.-  ..++.-+.-
T Consensus       203 ~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f-~kk~vdv~fppe~~~DFPvamqvs~ky--gviyviTK~  279 (494)
T 1bpo_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF-PKKAVDVFFPPEAQNDFPVAMQISEKH--DVVFLITKY  279 (494)
T ss_dssp             EEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC-CCEEEECCCCTTSTTCCEEEEEEETTT--TEEEEEETT
T ss_pred             EEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc-cceeeeeeCCcccccCceeEEEecccC--CEEEEEecC
Confidence            333332     23333332   3789999986431 11100 0111111 11  112334455566554  688888899


Q ss_pred             CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEE
Q 022590          238 GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRW  289 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw  289 (294)
                      |.|++||++++..+...++.    ..+|-..+-.....=++.....|.|.--
T Consensus       280 G~i~lyDleTgt~i~~nrIs----~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v  327 (494)
T 1bpo_A          280 GYIHLYDLETGTCIYMNRIS----GETIFVTAPHEATAGIIGVNRKGQVLSV  327 (494)
T ss_dssp             SEEEEEETTTCCEEEEEECC----SSCEEEEEEETTTTEEEEEETTCEEEEE
T ss_pred             ceEEEEecccceeeeeeccc----CCceEEecccCCCCcEEEEccCceEEEE
Confidence            99999999999877666654    2345444444444445555566665443

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.30  E-value=0.047  Score=44.03  Aligned_cols=115  Identities=10%  Similarity=0.083  Sum_probs=70.2

Q ss_pred             eeEEEEE-------eecCCCceEEEEeecCC-------eEEEEEcCC-cccc-----ceecccCcceEEEEeCCCCCceE
Q 022590           10 SFYTVSW-------ACNVDGIPFLVAGGING-------IIRVIDVSN-EKLH-----KSFVGHGDSINEIRTQPLKPSLV   69 (294)
Q Consensus        10 ~v~~~~~-------~~~~~~~~~l~~~~~dg-------~i~iw~~~~-~~~~-----~~~~~h~~~v~~~~~~~~~~~~l   69 (294)
                      ....++|       .  ++|+ .|+++...+       .|.+.+... ++..     ..+... .....++++|.++.++
T Consensus       187 ~p~~ia~~~~~~~~d--~~G~-~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LY  262 (496)
T 3kya_A          187 RIRSIAFNKKIEGYA--DEAE-YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELY  262 (496)
T ss_dssp             BEEEEEECCCBTTTB--CTTC-EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEE
T ss_pred             CCcEEEEeecccccC--CCCC-EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEE
Confidence            4667777       6  8887 555554443       266665433 2222     122222 2446788899666667


Q ss_pred             EEeeCCCcEEEEEcC-------CCce-----------EEE-eeccCCCCCceeEEEEecCCCc-eEEeeecCCcEEEEec
Q 022590           70 VSASKDESVRLWNVQ-------TGIC-----------ILI-FAGAGGHRNEVLSVDFHPSDIY-RIASCGMDNTVKIWSM  129 (294)
Q Consensus        70 ~s~~~dg~i~vwd~~-------~~~~-----------~~~-~~~~~~~~~~v~~l~~~~~~~~-~l~~~~~dg~i~~wd~  129 (294)
                      ++-..++.|..+|+.       ++..           ... +..  +.......|+|+| +++ ++++-.....|+.++.
T Consensus       263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~--~~~~~p~~ia~~p-~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI--ADPSWEFQIFIHP-TGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC--SSSSCCEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCEEEEEecccccccccCceeecccccccccccceeEec--CCCCCceEEEEcC-CCCEEEEEeCCCCEEEEEec
Confidence            777788889999987       4543           112 221  2334568999999 776 4555566778888766


Q ss_pred             cc
Q 022590          130 KE  131 (294)
Q Consensus       130 ~~  131 (294)
                      ..
T Consensus       340 dg  341 (496)
T 3kya_A          340 DE  341 (496)
T ss_dssp             ET
T ss_pred             CC
Confidence            54

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.25  E-value=0.037  Score=41.86  Aligned_cols=104  Identities=13%  Similarity=0.015  Sum_probs=52.9

Q ss_pred             CCCceEEEEeec----C-------CeEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeCC--------CcE
Q 022590           20 VDGIPFLVAGGI----N-------GIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASKD--------ESV   78 (294)
Q Consensus        20 ~~~~~~l~~~~~----d-------g~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~d--------g~i   78 (294)
                      .++. +++.|+.    +       ..+..||..+++-.  ..+......-..+.+   ++.+++.|+.+        ..+
T Consensus        44 ~~~~-iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~  119 (315)
T 4asc_A           44 KENQ-VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSV  119 (315)
T ss_dssp             TTCC-EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCE
T ss_pred             ECCE-EEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceE
Confidence            4566 7777763    1       12778888765422  112111111122222   45677777742        458


Q ss_pred             EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeec-C-----CcEEEEeccc
Q 022590           79 RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM-D-----NTVKIWSMKE  131 (294)
Q Consensus        79 ~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~-d-----g~i~~wd~~~  131 (294)
                      .+||..+.+-.. +.... ....-.+++..  ++.+++.|+. +     ..+.+||+.+
T Consensus       120 ~~~d~~~~~W~~-~~~~p-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A          120 MCYDRLSFKWGE-SDPLP-YVVYGHTVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             EEEETTTTEEEE-CCCCS-SCCBSCEEEEE--TTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             EEECCCCCcEeE-CCCCC-CcccceeEEEE--CCEEEEEeCCCCCCcccceEEEEeCCC
Confidence            889987765322 22110 11111222232  6677778776 2     3578888776

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.13  E-value=0.062  Score=42.14  Aligned_cols=167  Identities=14%  Similarity=0.052  Sum_probs=93.4

Q ss_pred             CCceEEEeeCCCcEEEEEcCCCceEEEeeccC-CCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeec
Q 022590           65 KPSLVVSASKDESVRLWNVQTGICILIFAGAG-GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT  143 (294)
Q Consensus        65 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~  143 (294)
                      ++..++.+- ++.||.-++..+...+.+.... -.-..|..+..+| ++.+||..+ +..|.|-.+........... . 
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~-~-  105 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDVS-I-  105 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCHH-H-
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcccc-c-
Confidence            444444443 3778888877544444444210 0122688899999 888888876 46899998884211110000 0 


Q ss_pred             CCCCCCCCceeeeceEEe----ecCCCceeeccee-----cceEEEeeCCCeEEEecCCCCCCCCC-CCCceeeeeeecC
Q 022590          144 DLPSKFPTKYVQFPVFIA----SVHSNYVDCNRWL-----GDFILSKSVDNEIVLWEPKMKEQSPG-EGTADILQKYPVP  213 (294)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~-----~~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~  213 (294)
                             ....+.....+    .....+|..+.|+     +..|++-..|+.|++||+......+. .............
T Consensus       106 -------~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~  178 (452)
T 3pbp_A          106 -------QDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDAR  178 (452)
T ss_dssp             -------HHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSS
T ss_pred             -------ccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcc
Confidence                   00000000111    1135678888886     66899999999999999987432211 0000001122223


Q ss_pred             CCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590          214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~  243 (294)
                      ...+.+++|..++--.|+++.+..|.|+-.
T Consensus       179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          179 VNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             cceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            367889999997632333335588888754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.11  E-value=0.059  Score=41.56  Aligned_cols=102  Identities=15%  Similarity=0.141  Sum_probs=57.0

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc--ccee---cccCcceEEEEeCCC---CCceEEEeeCC-----Cc
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSF---VGHGDSINEIRTQPL---KPSLVVSASKD-----ES   77 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~---~~h~~~v~~~~~~~~---~~~~l~s~~~d-----g~   77 (294)
                      -..++|.  |+|+ ++ ++..+|.|++++  +++.  +..+   .........|+++|+   ++.++++-...     +.
T Consensus        33 P~~ia~~--pdG~-l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           33 PWALAFL--PDGG-ML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             EEEEEEC--TTSC-EE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             ceEEEEc--CCCe-EE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            3567776  9998 44 445679999998  3332  1111   112356789999993   24444444432     56


Q ss_pred             EEEEEcCCCce-----EE-EeeccCCCCCceeEEEEecCCCceEEeee
Q 022590           78 VRLWNVQTGIC-----IL-IFAGAGGHRNEVLSVDFHPSDIYRIASCG  119 (294)
Q Consensus        78 i~vwd~~~~~~-----~~-~~~~~~~~~~~v~~l~~~~~~~~~l~~~~  119 (294)
                      |..++...+..     +. .+....+.......|+|.| ++.++++.+
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G  153 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTG  153 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECC
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEEC
Confidence            77788764321     11 1220001112346899999 777666543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.03  E-value=0.074  Score=48.37  Aligned_cols=219  Identities=15%  Similarity=0.169  Sum_probs=119.9

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCC
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  112 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  112 (294)
                      .+|.|.|+.++..+.+-.   -.--+.-.+| ..+.+|.-. ..++.|+|+++.+.+..+.    ...+|.--.|-  +.
T Consensus        48 ~~vvIidl~~~~~~~rrp---i~AdsAIMnP-~~~iiALra-g~~lQiFnl~~k~klks~~----~~e~VvfWkWi--s~  116 (1630)
T 1xi4_A           48 AQVVIIDMNDPSNPIRRP---ISADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHT----MTDDVTFWKWI--SL  116 (1630)
T ss_pred             ceEEEEECCCCCCccccc---ccchhhccCC-CcceEEEec-CCeEEEeehHHhhhhcccc----cCCCceEEEec--CC
Confidence            478888887765432111   1112233567 555555543 6889999999988888776    55678878886  44


Q ss_pred             ceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC----CCceeeccee--cceEEEee----
Q 022590          113 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH----SNYVDCNRWL--GDFILSKS----  182 (294)
Q Consensus       113 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~--~~~l~~~~----  182 (294)
                      +.|+-.+ +..|.-|++....                      .|...+..|    ...|.....+  .++++..|    
T Consensus       117 ~~l~lVT-~~aVyHW~~~~~s----------------------~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~  173 (1630)
T 1xi4_A          117 NTVALVT-DNAVYHWSMEGES----------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  173 (1630)
T ss_pred             CeeEEEc-CCeEEEeccCCCC----------------------ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccC
Confidence            5555555 4589999996511                      111111111    1112221111  34444322    


Q ss_pred             ---CCCeEEEecCCCCCCCCCCCCceeeeeeecCCC--CeeEEEEcccCCcceEEEEcCCCeEEEEeccCC---Cceeee
Q 022590          183 ---VDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC--DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS---PPVLIA  254 (294)
Q Consensus       183 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~  254 (294)
                         -.|.+.+|...........++......+..+..  +..-++|....        ...+.++|.++...   .+....
T Consensus       174 ~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~--------~~g~kLhi~Ei~~~~~~~~~f~k  245 (1630)
T 1xi4_A          174 QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG--------QAGGKLHIIEVGTPPTGNQPFPK  245 (1630)
T ss_pred             CCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEec--------CCCceEEEEecCCCccCCCCCcc
Confidence               358899999887654443333333333332221  11122222221        11368889888543   111111


Q ss_pred             -----eccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          255 -----RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       255 -----~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                           .++......-..++..++.-..+..-+.-|.|+++|+.+
T Consensus       246 k~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             ccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc
Confidence                 111111223345688888878888889999999999976

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.00  E-value=0.1  Score=47.46  Aligned_cols=203  Identities=9%  Similarity=0.108  Sum_probs=110.2

Q ss_pred             cCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-ceEEEeeccCC
Q 022590           19 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGG   97 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~   97 (294)
                      +|..+ .+|.=. ..++.|+|+++...++.+.-. .+|.-=.|-.  .+.|+-.+. ..|..|++... .+.+.|.   .
T Consensus        74 nP~~~-iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT~-~aVyHW~~~~~s~P~k~fd---R  144 (1630)
T 1xi4_A           74 NPASK-VIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVTD-NAVYHWSMEGESQPVKMFD---R  144 (1630)
T ss_pred             CCCcc-eEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEcC-CeEEEeccCCCCccHHHHh---c
Confidence            56665 555554 679999999998888877743 4566666764  344444443 56999999642 3333343   2


Q ss_pred             C----CCceeEEEEecCCCceEE-ee------ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590           98 H----RNEVLSVDFHPSDIYRIA-SC------GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  166 (294)
Q Consensus        98 ~----~~~v~~l~~~~~~~~~l~-~~------~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (294)
                      |    ...|..-..++ +...++ +|      ...|.+.+|.......                        ..+.+|..
T Consensus       145 ~~~L~~~QIinY~~d~-~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s------------------------Q~iegha~  199 (1630)
T 1xi4_A          145 HSSLAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------------------------QPIEGHAA  199 (1630)
T ss_pred             chhcccCeeEEeeeCC-CCCeEEEEeeccCCCcccceeeeeecccccc------------------------hhhhHhHh
Confidence            3    34566666777 444444 33      2457888888876321                        12222322


Q ss_pred             ceeeccee-----cceEEEee---CCCeEEEecCCCC-C--CCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590          167 YVDCNRWL-----GDFILSKS---VDNEIVLWEPKMK-E--QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       167 ~i~~~~~~-----~~~l~~~~---~d~~i~iwd~~~~-~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                      ....+...     ...+..+.   ..+.+++-++... .  .............-.....-..++..++.-  .++..-+
T Consensus       200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~--g~iy~it  277 (1630)
T 1xi4_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH--DVVFLIT  277 (1630)
T ss_pred             hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc--CEEEEEe
Confidence            22222211     11222111   1368899888543 1  111111111111001112223345555544  5788888


Q ss_pred             CCCeEEEEeccCCCceeeeecc
Q 022590          236 REGKIFVWELQSSPPVLIARLS  257 (294)
Q Consensus       236 ~dg~i~i~d~~~~~~~~~~~~~  257 (294)
                      .-|.+.+||+.++..+...++.
T Consensus       278 k~G~~~~~d~~t~~~i~~~ris  299 (1630)
T 1xi4_A          278 KYGYIHLYDLETGTCIYMNRIS  299 (1630)
T ss_pred             cCceEEEEecccchhhhhcccc
Confidence            8999999999999766555543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.92  E-value=0.091  Score=40.48  Aligned_cols=60  Identities=5%  Similarity=-0.074  Sum_probs=27.8

Q ss_pred             eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC------eEEEEeccCCCceeeeec
Q 022590          186 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG------KIFVWELQSSPPVLIARL  256 (294)
Q Consensus       186 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~  256 (294)
                      .+.+||+.+.+       ...+..++.....-  .+...++  .+++.|+.++      .|.++++++++.......
T Consensus       286 ~~~~yd~~~~~-------W~~~~~~p~~r~~~--~~~~~~~--~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~  351 (357)
T 2uvk_A          286 STDIHLWHNGK-------WDKSGELSQGRAYG--VSLPWNN--SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE  351 (357)
T ss_dssp             CCEEEECC----------CEEEEECSSCCBSS--EEEEETT--EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred             eEEEEecCCCc-------eeeCCCCCCCcccc--eeEEeCC--EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence            46788887653       23333333332222  2233344  4666666432      466678888765444433

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.85  E-value=0.25  Score=44.59  Aligned_cols=104  Identities=11%  Similarity=0.019  Sum_probs=66.7

Q ss_pred             EEEEeecCCeEEEEEcCCcccccee-cccCcceEEEEeCCCC-----CceEEEeeC-CCcEEEEEcCCCceEEEeeccCC
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLK-----PSLVVSASK-DESVRLWNVQTGICILIFAGAGG   97 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~-~~h~~~v~~~~~~~~~-----~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~   97 (294)
                      +++.++ ++.+.++++++++..... ..-...|.|+++.|..     ..+++.|.. |++++|+++.+.+.+.....  +
T Consensus       525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L--~  601 (1158)
T 3ei3_A          525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEML--G  601 (1158)
T ss_dssp             EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEEC--C
T ss_pred             EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEEC--C
Confidence            455554 577888887765322111 1235689999998632     368899986 99999999987766654432  1


Q ss_pred             CCCceeEEEEecC-CCceEEeeecCCcEEEEeccc
Q 022590           98 HRNEVLSVDFHPS-DIYRIASCGMDNTVKIWSMKE  131 (294)
Q Consensus        98 ~~~~v~~l~~~~~-~~~~l~~~~~dg~i~~wd~~~  131 (294)
                      -.....++.+... +..+|..|-.||.+.-+.+..
T Consensus       602 ~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~  636 (1158)
T 3ei3_A          602 GEIIPRSILMTTFESSHYLLCALGDGALFYFGLNI  636 (1158)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECT
T ss_pred             CCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcC
Confidence            1234455544321 446788999999987776553

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.72  E-value=0.13  Score=39.54  Aligned_cols=193  Identities=12%  Similarity=0.068  Sum_probs=99.7

Q ss_pred             ceEEEEeCCCCCceEEEee------------CCCcEEEEEcCCC-ceEEEeeccC----CCCCceeEEEEecC-CC--ce
Q 022590           55 SINEIRTQPLKPSLVVSAS------------KDESVRLWNVQTG-ICILIFAGAG----GHRNEVLSVDFHPS-DI--YR  114 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~~------------~dg~i~vwd~~~~-~~~~~~~~~~----~~~~~v~~l~~~~~-~~--~~  114 (294)
                      ..-++...| ++..+++++            .+|.|.++|..+. .....+....    ........|.+.++ ++  .+
T Consensus        51 G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            456677777 665555542            6899999998742 1222332211    12346778887662 22  23


Q ss_pred             EEeeec--CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC-CCceeeccee--cceEEEee-------
Q 022590          115 IASCGM--DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH-SNYVDCNRWL--GDFILSKS-------  182 (294)
Q Consensus       115 l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~--~~~l~~~~-------  182 (294)
                      +++-..  +.++.+|++........                   .+....+. -...+.+..+  |.+.++..       
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~-------------------~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~  190 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLL-------------------HLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPY  190 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEE-------------------EEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHH
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEE-------------------EEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcc
Confidence            444333  56788888765321111                   11111111 1223344443  33333322       


Q ss_pred             ----------CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC-Cce
Q 022590          183 ----------VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-PPV  251 (294)
Q Consensus       183 ----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~  251 (294)
                                ..|.+..+|..  +          +......-...+.++|+|+++ .+.++-+..+.|..|++... +..
T Consensus       191 ~~~~e~~~~~~~g~vyr~d~~--~----------~~~~~~~l~~pNGia~spDg~-~lYvadt~~~~I~~~~~~~~g~l~  257 (355)
T 3sre_A          191 LKSWEMHLGLAWSFVTYYSPN--D----------VRVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANWTLT  257 (355)
T ss_dssp             HHHHHHHTTCCCEEEEEECTT--C----------CEEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             cccchhhccCCccEEEEEECC--e----------EEEeecCCcccCcceECCCCC-EEEEEeCCCCeEEEEEECCCCcEe
Confidence                      12455555542  1          111111123467899999996 34455567889999999743 221


Q ss_pred             eeeeccccccCCCeEEEEEcc-CCCEEEEeccC
Q 022590          252 LIARLSHAQSKSPIRQTAMSY-DGSTILSCCED  283 (294)
Q Consensus       252 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d  283 (294)
                      ....+.   .....-.+++.+ +|++.+++..+
T Consensus       258 ~~~~~~---~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          258 PLRVLS---FDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEEE---CSSEEEEEEECTTTCCEEEEEESC
T ss_pred             cCEEEe---CCCCCceEEEeCCCCcEEEEecCC
Confidence            112221   134567889998 58887766433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.69  E-value=0.14  Score=39.38  Aligned_cols=88  Identities=13%  Similarity=0.070  Sum_probs=47.2

Q ss_pred             cCCeEEEEEcCCcc-cccee--cc-----cCcceEEEEeCCC-CC-ceEEEe-eC--CCcEEEEEcCCC-ceEEEeeccC
Q 022590           31 INGIIRVIDVSNEK-LHKSF--VG-----HGDSINEIRTQPL-KP-SLVVSA-SK--DESVRLWNVQTG-ICILIFAGAG   96 (294)
Q Consensus        31 ~dg~i~iw~~~~~~-~~~~~--~~-----h~~~v~~~~~~~~-~~-~~l~s~-~~--dg~i~vwd~~~~-~~~~~~~~~~   96 (294)
                      .+|.|.++|.++.. ....+  .+     ..-....|.+.++ ++ .+|+.+ ..  +.+|.+|++..+ .....+....
T Consensus        81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            68999999987421 11222  22     1235666776542 23 234444 22  567888887654 2222222221


Q ss_pred             C-CCCceeEEEEecCCCceEEeee
Q 022590           97 G-HRNEVLSVDFHPSDIYRIASCG  119 (294)
Q Consensus        97 ~-~~~~v~~l~~~~~~~~~l~~~~  119 (294)
                      + .-...+.+.+.+ ++.++++..
T Consensus       161 g~~~~~pND~~v~~-~G~fyvt~~  183 (355)
T 3sre_A          161 HKLLPSVNDIVAVG-PEHFYATND  183 (355)
T ss_dssp             CTTCSSEEEEEEEE-TTEEEEEES
T ss_pred             cCCCCCCceEEEeC-CCCEEecCC
Confidence            2 224578999998 777666543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.68  E-value=0.13  Score=38.89  Aligned_cols=105  Identities=15%  Similarity=0.032  Sum_probs=51.8

Q ss_pred             CCCceEEEEeec----CC-------eEEEEEcCCccccc--eecccCcceEEEEeCCCCCceEEEeeCC-------CcEE
Q 022590           20 VDGIPFLVAGGI----NG-------IIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKD-------ESVR   79 (294)
Q Consensus        20 ~~~~~~l~~~~~----dg-------~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d-------g~i~   79 (294)
                      .++. +++.|+.    ++       .+.+||..+.+-..  .+......-..+.+   ++.+++.|+.+       ..+.
T Consensus        55 ~~~~-lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           55 QQNQ-VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             SSSC-EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             ECCE-EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccceEE
Confidence            4565 7777773    12       26778876654221  12211111122222   45677777754       2477


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC------CcEEEEecccc
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEF  132 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~~wd~~~~  132 (294)
                      +||+.+.+-...-...  ....-.+++. . ++.+++.|+.+      ..+.+||+.+.
T Consensus       131 ~yd~~~~~W~~~~~~p--~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~  185 (318)
T 2woz_A          131 CYDPVAAKWSEVKNLP--IKVYGHNVIS-H-NGMIYCLGGKTDDKKCTNRVFIYNPKKG  185 (318)
T ss_dssp             EEETTTTEEEEECCCS--SCEESCEEEE-E-TTEEEEECCEESSSCBCCCEEEEETTTT
T ss_pred             EEeCCCCCEeECCCCC--CcccccEEEE-E-CCEEEEEcCCCCCCCccceEEEEcCCCC
Confidence            8888766533221110  1101112222 2 66777777642      35888888763

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.46  E-value=0.2  Score=38.28  Aligned_cols=111  Identities=13%  Similarity=0.073  Sum_probs=69.0

Q ss_pred             EEEEeecCCeEEEEEcCCccccceeccc-CcceEEEEeC--CCCCceEEEe-eCCCcEEEEEcCCCceEEEeeccC-CCC
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGH-GDSINEIRTQ--PLKPSLVVSA-SKDESVRLWNVQTGICILIFAGAG-GHR   99 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h-~~~v~~~~~~--~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~-~~~   99 (294)
                      +++.++.||.|.-.|..+|+...+++.. ..++....-.  +.++..++.. +.||.|..++..+|.....+.... -..
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            7999999999999999999988877653 1232222111  1122344443 689999999998886554443210 011


Q ss_pred             CceeEEEEec--------CCCceEEeeecCCcEEEEecccccccc
Q 022590          100 NEVLSVDFHP--------SDIYRIASCGMDNTVKIWSMKEFWTYV  136 (294)
Q Consensus       100 ~~v~~l~~~~--------~~~~~l~~~~~dg~i~~wd~~~~~~~~  136 (294)
                      .++.. .-.|        ..+..+++|+.+|.+...|+++++...
T Consensus        92 SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W  135 (339)
T 2be1_A           92 SPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS  135 (339)
T ss_dssp             CSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred             ccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence            22221 0000        034568899999999999999865443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.032  Score=42.55  Aligned_cols=118  Identities=9%  Similarity=0.043  Sum_probs=64.7

Q ss_pred             CceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEe--cCCCceEEee-ecCCcEEEEeccccccccccceee
Q 022590           66 PSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFH--PSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTW  142 (294)
Q Consensus        66 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~--~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~  142 (294)
                      +.+++.++.||.|.-.|..+|+....+...  ...++....-.  +.++..++.. ..||.|..++..++......  ..
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~--~~   85 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL--SI   85 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE--EH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee--cc
Confidence            357889999999999999999999888741  11233221110  1122434443 58999999998764221100  00


Q ss_pred             cCCCCCCCCceeeeceEEeecCCCcee-ec-c-eecceEEEeeCCCeEEEecCCCCCC
Q 022590          143 TDLPSKFPTKYVQFPVFIASVHSNYVD-CN-R-WLGDFILSKSVDNEIVLWEPKMKEQ  197 (294)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~-~-~~~~~l~~~~~d~~i~iwd~~~~~~  197 (294)
                      .....       ..|   +.....+|. .. . -.+..+++++.+|.+.-.|+++++.
T Consensus        86 ~~lv~-------~SP---~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~  133 (339)
T 2be1_A           86 RQLVS-------TSP---LHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI  133 (339)
T ss_dssp             HHHHT-------TCS---EEEECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred             cccee-------ccc---cccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence            00000       000   000001111 00 0 0267888999999999999998873

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.34  E-value=0.27  Score=38.64  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=74.4

Q ss_pred             eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCC----CCceeeeeeec------CCCCeeEEEEcccCC-cceEEEE
Q 022590          168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGE----GTADILQKYPV------PECDIWFIKFSCDFH-YNAAAIG  234 (294)
Q Consensus       168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~------~~~~i~~~~~~~~~~-~~~l~~~  234 (294)
                      |..+..+  |++|+..+ +..|.|-.+..+......    ...+ .+.+..      +..+|..+.|+|-+. +..|++-
T Consensus        68 i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           68 TFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             eeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            4444444  77777764 568888888743322211    1111 223332      356799999999764 3578999


Q ss_pred             cCCCeEEEEeccCCCceeeeecc-------ccccCCCeEEEEEccCCCEEEE--eccCCcEEE
Q 022590          235 NREGKIFVWELQSSPPVLIARLS-------HAQSKSPIRQTAMSYDGSTILS--CCEDGAIWR  288 (294)
Q Consensus       235 ~~dg~i~i~d~~~~~~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~v  288 (294)
                      ..|+.|++||+......+. .+.       .......|.+++|.+++-.|..  .+..|.|+-
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            9999999999987432222 111       1123367899999998876666  458887753

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.20  E-value=0.19  Score=35.57  Aligned_cols=189  Identities=8%  Similarity=-0.092  Sum_probs=89.3

Q ss_pred             CCceEEEeeCCCcEEEEEcCCCc------eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccccccc
Q 022590           65 KPSLVVSASKDESVRLWNVQTGI------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEK  138 (294)
Q Consensus        65 ~~~~l~s~~~dg~i~vwd~~~~~------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~  138 (294)
                      ...+|+....| +++.=...++.      ....+-.  +-=..+..++|+| ++.+.++  .+|.+.-.+..+....   
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~--~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~---   73 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGK--GGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDND---   73 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEES--SSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTC---
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCc--cccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcc---
Confidence            34566777777 66655554443      1122221  0123678999999 8886666  6777665554331000   


Q ss_pred             ceeecCCCCCCCCceeeeceEEeec-CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCC
Q 022590          139 SFTWTDLPSKFPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC  215 (294)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  215 (294)
                                   .. ......+.. --..-.++.|+  +.+.++  .||.|.-++..+............+.  ..--.
T Consensus        74 -------------~W-~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg--~~gw~  135 (236)
T 1tl2_A           74 -------------NW-MGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVG--SGGWS  135 (236)
T ss_dssp             -------------CH-HHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEE--CSSGG
T ss_pred             -------------cc-cccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEec--cCCCC
Confidence                         00 000001100 00113455565  444444  66999888764432211110111111  00113


Q ss_pred             CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC-cee--eeeccccccCCCeEEEEEccCCCEEEEeccCCcE
Q 022590          216 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP-PVL--IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI  286 (294)
Q Consensus       216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  286 (294)
                      .+..+.+.|++   .|.+.. |+.++-....... ...  ....-....-...+-+.|.+++.+.+..  +|.+
T Consensus       136 ~~~~lff~p~G---~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          136 GFKFLFFHPNG---YLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             GEEEEEECTTS---CEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             ceEEEEECCCc---eEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            57889999999   344444 7875433222111 000  0000000111234557799999877766  7743

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.19  E-value=0.3  Score=37.65  Aligned_cols=75  Identities=11%  Similarity=0.007  Sum_probs=45.6

Q ss_pred             CCeeEEEEcccC-----CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEE
Q 022590          215 CDIWFIKFSCDF-----HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWR  288 (294)
Q Consensus       215 ~~i~~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~v  288 (294)
                      ..+..+.|....     ++.++++....+.|...++..++......+- ......+..+++.|||.+.++.. .+|  +|
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~rp~~v~~~pdG~lyv~td~~~g--~I  347 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRIL-TDRGQRIRDVRTGPDGYLYVLTDESSG--EL  347 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEES-GGGCCCEEEEEECTTSCEEEEECSTTE--EE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcc-cCCCCceeEEEECCCCcEEEEEeCCCC--EE
Confidence            346677776421     2357777777888988888765322222211 12235789999999998766543 455  45


Q ss_pred             EecC
Q 022590          289 WDAI  292 (294)
Q Consensus       289 w~~~  292 (294)
                      |.+.
T Consensus       348 ~ri~  351 (353)
T 2g8s_A          348 LKVS  351 (353)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5554

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.00  E-value=0.62  Score=39.66  Aligned_cols=197  Identities=9%  Similarity=0.014  Sum_probs=95.7

Q ss_pred             CCceEEEeeCC----CcEEEEEcCCCceEEEe-ec----cCCCCCceeEEEEecCCCceEEeeecCC------cEEEEec
Q 022590           65 KPSLVVSASKD----ESVRLWNVQTGICILIF-AG----AGGHRNEVLSVDFHPSDIYRIASCGMDN------TVKIWSM  129 (294)
Q Consensus        65 ~~~~l~s~~~d----g~i~vwd~~~~~~~~~~-~~----~~~~~~~v~~l~~~~~~~~~l~~~~~dg------~i~~wd~  129 (294)
                      ++.+++.|+.+    ..+.+||..+++-...- ..    .......-....+.. ++.+++.||.++      .+.+||.
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEeC
Confidence            56777778753    45788898777543332 10    001111122333322 556777776543      4677777


Q ss_pred             cccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce-ecceEEEeeCCC--eEEEecCCCCCCCCCCCCcee
Q 022590          130 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW-LGDFILSKSVDN--EIVLWEPKMKEQSPGEGTADI  206 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~~~~~  206 (294)
                      .+..        |...+.             .......-.++.+ .+.+++.|+.++  .+.+||+.+..-       ..
T Consensus       476 ~t~~--------W~~~~~-------------~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W-------~~  527 (695)
T 2zwa_A          476 KTRE--------WSMIKS-------------LSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF-------KD  527 (695)
T ss_dssp             TTTE--------EEECCC-------------CSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE-------EE
T ss_pred             CCCc--------EEECCC-------------CCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce-------EE
Confidence            7631        111100             0001111112222 467777777654  689999886531       11


Q ss_pred             eee---eecCCCCeeEEEEcccCCcceEEEEcC-------CCeEEEEeccCCC------ceeeeeccccccCCCeEEEEE
Q 022590          207 LQK---YPVPECDIWFIKFSCDFHYNAAAIGNR-------EGKIFVWELQSSP------PVLIARLSHAQSKSPIRQTAM  270 (294)
Q Consensus       207 ~~~---~~~~~~~i~~~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~  270 (294)
                      +..   .+........+.+..... .+++.|+.       -+.+..||+.+.+      ......... .....- +++.
T Consensus       528 ~~~~g~~p~~r~~~~a~v~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~-~~R~~~-~~~~  604 (695)
T 2zwa_A          528 VTPKDEFFQNSLVSAGLEFDPVSK-QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL-FQRYGS-QIKY  604 (695)
T ss_dssp             CCCSSGGGGSCCBSCEEEEETTTT-EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG-GCCBSC-EEEE
T ss_pred             ccCCCCCCCcccceeEEEEeCCCC-EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC-CCcccc-eEEE
Confidence            111   111222223344444311 46666654       2468999998886      222222110 111111 2333


Q ss_pred             ccCCCEEEEeccC--------CcEEEEecCC
Q 022590          271 SYDGSTILSCCED--------GAIWRWDAIP  293 (294)
Q Consensus       271 s~~~~~l~s~~~d--------g~i~vw~~~~  293 (294)
                      ..++++++.|+.+        ..+.+||+.+
T Consensus       605 ~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          605 ITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             EETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             eCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            3337777778743        4588888764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.99  E-value=0.67  Score=39.90  Aligned_cols=244  Identities=11%  Similarity=0.041  Sum_probs=119.3

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      .|.++...  +++. .|-.|+. +-+..++..+++...........|.++.... ++.+.+ |+.+| +.+++..+++..
T Consensus       192 ~i~~i~~d--~~~~-~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi-gT~~G-l~~~~~~~~~~~  264 (758)
T 3ott_A          192 FVNSLLED--TTRQ-CVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGDLLA-GTDNG-LYVYHNDTTPLQ  264 (758)
T ss_dssp             CEEEEEEE--TTTT-EEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCCEEE-EETTE-EEEECCTTSCCE
T ss_pred             eeEEEEEE--CCCC-EEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCCEEE-EeCCc-eeEEecCCCcEE
Confidence            36666654  5555 4555554 4578888776543221111234688888776 555544 45544 778887665543


Q ss_pred             EEeecc----CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           90 LIFAGA----GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        90 ~~~~~~----~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                      ......    .-....|.++.... ++. |-.|+..| +.++.......    ......             . ......
T Consensus       265 ~~~~~~~~~~~l~~~~i~~i~~D~-~g~-lWiGT~~G-l~~~~~~~~~~----~~~~~~-------------~-~~~~~~  323 (758)
T 3ott_A          265 HIIHDSRNIQSLTNNIIWNIFADQ-EHN-IWLGTDYG-ISLSRYNSALQ----FIPISQ-------------I-TGTGDG  323 (758)
T ss_dssp             EECCCTTCTTSCSCSCEEEEEECT-TCC-EEEEESSS-EEEECCCC-CE----EEEHHH-------------H-SCSCCC
T ss_pred             EEEcCCCCcCcCCcCeEEEEEEcC-CCC-EEEEeCCc-ccccccCCcee----EEeccc-------------C-CCCCCC
Confidence            222110    01234588888776 555 55555556 54443221000    000000             0 000112


Q ss_pred             Cceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeee----eeecCCCCeeEEEEcccCCcceEEEEcCCCeE
Q 022590          166 NYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ----KYPVPECDIWFIKFSCDFHYNAAAIGNREGKI  240 (294)
Q Consensus       166 ~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i  240 (294)
                      ..|.++.-+ ...|..|+.+ -+..++..++....    .....    ........|.++.-..++   .|-.|+ ++-+
T Consensus       324 ~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~v~~i~~d~~g---~lWigt-~~GL  394 (758)
T 3ott_A          324 NQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERHD----AIWYRMGDKTYPLSHNRIRHIYEDKEQ---QLWIAT-DGSI  394 (758)
T ss_dssp             CBEEEEEECTTCCEEEEETT-EEEEESCTTSSCCC----CEEECTTCSSSCCSCSCEEEEEECTTS---CEEEEE-TTEE
T ss_pred             ceEEEEEEcCCCCEEEeeCC-cceeecccccccce----eEEeccCCcCCCCCCCceEEEEECCCC---CEEEEe-CCcH
Confidence            345565554 3445555654 46667665432110    00000    001122456777666665   244455 4568


Q ss_pred             EEEeccCCCceeeeecccc--ccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          241 FVWELQSSPPVLIARLSHA--QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       241 ~i~d~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ..||..+.+..........  .....|.++...++|++.+ |+..+-|.++|.
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~  446 (758)
T 3ott_A          395 NRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDK  446 (758)
T ss_dssp             EEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEH
T ss_pred             hhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEcc
Confidence            8999877642222111100  1234588888888776555 554444666663

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.87  E-value=0.72  Score=39.30  Aligned_cols=106  Identities=13%  Similarity=0.128  Sum_probs=57.0

Q ss_pred             CCceEEEEeecC----CeEEEEEcCCcccccee--------cccCcceEEEEeCCCCCceEEEeeCCC------cEEEEE
Q 022590           21 DGIPFLVAGGIN----GIIRVIDVSNEKLHKSF--------VGHGDSINEIRTQPLKPSLVVSASKDE------SVRLWN   82 (294)
Q Consensus        21 ~~~~~l~~~~~d----g~i~iw~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~~l~s~~~dg------~i~vwd   82 (294)
                      ++. +++.|+.+    ..+.+||..+++-...-        ......-..+.+.. ++.+++.|+.++      .+.+||
T Consensus       397 ~~~-iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          397 GND-VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             SSC-EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             CCE-EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence            455 77777753    46888888776432211        11112223344432 456777777543      477888


Q ss_pred             cCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC--cEEEEeccc
Q 022590           83 VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN--TVKIWSMKE  131 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg--~i~~wd~~~  131 (294)
                      ..+.+-... ... .....-.+.+... ++.+++.|+.++  .+.+||+.+
T Consensus       475 ~~t~~W~~~-~~~-p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t  522 (695)
T 2zwa_A          475 MKTREWSMI-KSL-SHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTE  522 (695)
T ss_dssp             TTTTEEEEC-CCC-SBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTT
T ss_pred             CCCCcEEEC-CCC-CCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCC
Confidence            877543322 111 0111112233323 677888887655  688888877

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.70  E-value=0.065  Score=37.90  Aligned_cols=102  Identities=13%  Similarity=0.080  Sum_probs=59.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcc--------eEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDS--------INEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~--------v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      .+..++|.  |+|. +.++  .+|.+.-.+..+... ..+.+-...        ..++.|.| ++.+.++  .||.|.-+
T Consensus        42 ~~~~laf~--P~G~-LYaV--~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~  112 (236)
T 1tl2_A           42 NFKFLFLS--PGGE-LYGV--LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKA  112 (236)
T ss_dssp             TCSEEEEC--TTSC-EEEE--ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEE
T ss_pred             cceeEEEC--CCcc-EEEE--eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEe
Confidence            45566765  8997 4444  778776666544322 111111223        37899999 7777666  56988777


Q ss_pred             EcCCCceE------EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEE
Q 022590           82 NVQTGICI------LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVK  125 (294)
Q Consensus        82 d~~~~~~~------~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~  125 (294)
                      +..+...-      ..+-.  .-=..+..|.|.| ++.+.++.  |+.++
T Consensus       113 ~pP~~~~~~Wl~~a~~vg~--~gw~~~~~lff~p-~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          113 SPPQSDTDNWIARATEVGS--GGWSGFKFLFFHP-NGYLYAVH--GQQFY  157 (236)
T ss_dssp             SCCCSTTCCHHHHSEEEEC--SSGGGEEEEEECT-TSCEEEEE--TTEEE
T ss_pred             CCCcCCCCceeccccEecc--CCCCceEEEEECC-CceEEEEe--CCcEE
Confidence            65332111      11110  1114679999999 88766555  77744

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.51  E-value=1.1  Score=38.66  Aligned_cols=230  Identities=12%  Similarity=0.089  Sum_probs=118.6

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      ..|.++.-.  .+|.  |-.|+.+| +..||..+.+...........|.++...  ++. |..++.+ -+..+|..+++.
T Consensus        63 ~~i~~i~~d--~~g~--lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~--~g~-lWigt~~-Gl~~~~~~~~~~  133 (758)
T 3ott_A           63 TRIYCGVII--DNTY--LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQ--GDT-LWLGALN-GLYTYQLQSRKL  133 (758)
T ss_dssp             SCEEEEEEE--TTTE--EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEE--TTE-EEEEETT-EEEEEETTTCCE
T ss_pred             ceEEEEEEc--CCCc--EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEec--CCc-EEEEcCC-cceeEeCCCCeE
Confidence            457777654  6664  66666665 7889987764332111123357777543  444 4555555 477888876554


Q ss_pred             EEEeec--cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590           89 ILIFAG--AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  166 (294)
Q Consensus        89 ~~~~~~--~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (294)
                      . .+..  ..-....|.++.... ++.+. .|+.+ -+..++........   +.   .+..            ......
T Consensus       134 ~-~~~~~~~~l~~~~i~~i~~d~-~g~lW-igt~~-Gl~~~~~~~~~~~~---~~---~~~~------------~~~~~~  191 (758)
T 3ott_A          134 T-SFDTRRNGLPNNTIYSIIRTK-DNQIY-VGTYN-GLCRYIPSNGKFEG---IP---LPVH------------SSQSNL  191 (758)
T ss_dssp             E-EECHHHHCCSCSCEEEEEECT-TCCEE-EEETT-EEEEEETTTTEEEE---EC---CCCC------------TTCSSC
T ss_pred             E-EeccCCCCcCCCeEEEEEEcC-CCCEE-EEeCC-CHhhCccCCCceEE---ec---CCCc------------cccccc
Confidence            3 2310  001234688888776 55544 45544 47777765421100   00   0000            000122


Q ss_pred             ceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          167 YVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       167 ~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      .|.++..+  ++.|..|+. +.+..+|..+.+.       .....+  ....|.++....++   .|..|+.+ -+.+++
T Consensus       192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~-------~~~~~l--~~~~i~~i~~d~~g---~lWigT~~-Gl~~~~  257 (758)
T 3ott_A          192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI-------KQTEAF--HNNSIKSLALDGNG---DLLAGTDN-GLYVYH  257 (758)
T ss_dssp             CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE-------EEEEEE--EEEEEEEEEECTTC---CEEEEETT-EEEEEC
T ss_pred             eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE-------EeccCC--CCCeEEEEEEcCCC---CEEEEeCC-ceeEEe
Confidence            35666555  455555554 4688888765421       111111  12346666666665   34445544 578888


Q ss_pred             ccCCCceeeeecc---ccccCCCeEEEEEccCCCEEEEeccCC
Q 022590          245 LQSSPPVLIARLS---HAQSKSPIRQTAMSYDGSTILSCCEDG  284 (294)
Q Consensus       245 ~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg  284 (294)
                      ..+.+........   ..-....|.++....+|.+-+.. ..|
T Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT-~~G  299 (758)
T 3ott_A          258 NDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT-DYG  299 (758)
T ss_dssp             CTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE-SSS
T ss_pred             cCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe-CCc
Confidence            7765422111110   11123468999888888755543 445

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.88  E-value=0.96  Score=34.69  Aligned_cols=104  Identities=14%  Similarity=0.050  Sum_probs=59.3

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc--cee----cccCcceEEEEeCCC---CCceEEEee--CCCcE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH--KSF----VGHGDSINEIRTQPL---KPSLVVSAS--KDESV   78 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~----~~h~~~v~~~~~~~~---~~~~l~s~~--~dg~i   78 (294)
                      .-..++|.  |+|+ ++++--..|.|++++..+++..  ..+    .........|+++|+   ++.+.++-+  .++.|
T Consensus        33 ~P~~ia~~--pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v  109 (347)
T 3das_A           33 SPWGLAPL--PGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI  109 (347)
T ss_dssp             SEEEEEEC--TTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred             CceEEEEc--CCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence            34567776  9998 6666555899999986655431  111    223456899999993   344444322  34455


Q ss_pred             EEEEcCCC--------ceEE---EeeccCCCCCceeEEEEecCCCceEEeee
Q 022590           79 RLWNVQTG--------ICIL---IFAGAGGHRNEVLSVDFHPSDIYRIASCG  119 (294)
Q Consensus        79 ~vwd~~~~--------~~~~---~~~~~~~~~~~v~~l~~~~~~~~~l~~~~  119 (294)
                      .-|.+..+        +...   .+.....|  .-..|.|.| ++.++++.+
T Consensus       110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H--~g~~l~fgp-DG~Lyvt~G  158 (347)
T 3das_A          110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIH--NGGRIAFGP-DKMLYAGTG  158 (347)
T ss_dssp             EEEEBCTTSCTTCCBCCCEEEEEEECCCSSC--CCCCEEECT-TSCEEEECB
T ss_pred             EEEEeCCCCcccccCCCcEEEEEcCCCCCCc--cCccccCCC-CCCEEEEEC
Confidence            55555431        1111   12211123  346799999 777666654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.25  E-value=2.6  Score=33.73  Aligned_cols=107  Identities=12%  Similarity=0.168  Sum_probs=57.1

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc--ceecc------cCcceEEEEeCCC---CCceEEEeeC----
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH--KSFVG------HGDSINEIRTQPL---KPSLVVSASK----   74 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~------h~~~v~~~~~~~~---~~~~l~s~~~----   74 (294)
                      .-..++|.  |+|+ ++++-...+.|++++..+++..  ..+..      .......|+|+|+   ++.+.++-+.    
T Consensus        28 ~P~~~a~~--pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           28 KPHALLWG--PDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SEEEEEEC--TTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CceEEEEc--CCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            34567776  9998 5555444457988886555432  12211      2456779999994   4444444332    


Q ss_pred             --------CCcEEEEEcCCC--c---eEEEeec-cCCCCCceeEEEEecCCCceEEeeec
Q 022590           75 --------DESVRLWNVQTG--I---CILIFAG-AGGHRNEVLSVDFHPSDIYRIASCGM  120 (294)
Q Consensus        75 --------dg~i~vwd~~~~--~---~~~~~~~-~~~~~~~v~~l~~~~~~~~~l~~~~~  120 (294)
                              ...|.-++...+  .   ....+.. ..........|+|.| ++.++++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECC
Confidence                    124544554322  1   1111111 111123478999999 7776666543

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.17  E-value=1.9  Score=31.92  Aligned_cols=221  Identities=13%  Similarity=0.078  Sum_probs=113.4

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      ..|..++..  .  ...++. . ||.|..|-......+..-......|..++... . ..++. . ||.|..|-......
T Consensus        24 ~~i~~ia~G--~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~-~-hs~~l-~-~G~v~~wG~n~~Gq   93 (282)
T 3qhy_B           24 SGVDAIAGG--Y--FHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN-Y-HSLAL-K-DGEVIAWGGNEDGQ   93 (282)
T ss_dssp             SSCCEEEEC--S--SEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS-S-EEEEE-E-TTEEEEEECCTTST
T ss_pred             CCCcEEEeC--C--CeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC-C-EEEEE-E-CCEEEEeeCCCCCC
Confidence            356666653  2  213333 5 99999998654322221111234677787764 2 33343 4 89999997654322


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      +..-.   .-...|..++...  .+.++ -. ||.|..|-.....+...                   +    ......|
T Consensus        94 lg~P~---~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg~-------------------~----~~~~~~i  143 (282)
T 3qhy_B           94 TTVPA---EARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTTV-------------------P----AEAQSGV  143 (282)
T ss_dssp             TCCCG---GGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTSC-------------------C----GGGGSSE
T ss_pred             CCCCc---ccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCCC-------------------C----ccCCCCe
Confidence            21111   1234677777753  33333 34 99999998765322100                   0    0011234


Q ss_pred             eecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590          169 DCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       169 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                      ..++.-....+.-. ||.+..|-.....+...  +.       .....+..++.....   .++.  .+|.++.|=....
T Consensus       144 ~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--p~-------~~~~~v~~i~~G~~h---s~al--~~G~v~~wG~n~~  208 (282)
T 3qhy_B          144 TALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--PA-------EAQSGVDDVAGGIFH---SLAL--KDGKVIAWGDNRY  208 (282)
T ss_dssp             EEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--CG-------GGGSSEEEEEECSSE---EEEE--ETTEEEEEECCTT
T ss_pred             EEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--ce-------ecCCCeEEEEecCCE---EEEE--ECCeEEEEECCCC
Confidence            44443333333334 79999997665332210  00       002345555544332   3444  5899999976654


Q ss_pred             CceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          249 PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ...-...    .....|..++.......+++   ||.|+.|-.
T Consensus       209 gqlg~p~----~~~~~v~~i~~G~~h~~al~---~g~v~~wG~  244 (282)
T 3qhy_B          209 KQTTVPT----EALSGVSAIASGEWYSLALK---NGKVIAWGS  244 (282)
T ss_dssp             STTCCCG----GGGSSCCEEEECSSCEEEEE---TTEEEEEST
T ss_pred             CCCCCCc----ccCCCceEEEcCCCEEEEEE---CCEEEEecC
Confidence            3221111    11235777776554333333   888988854

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=92.38  E-value=3  Score=32.06  Aligned_cols=74  Identities=16%  Similarity=0.199  Sum_probs=44.1

Q ss_pred             cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE--EEeeccCCCCCceeEEEEecC---CCceEEeeecC-----Cc
Q 022590           54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI--LIFAGAGGHRNEVLSVDFHPS---DIYRIASCGMD-----NT  123 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~l~~~~~---~~~~l~~~~~d-----g~  123 (294)
                      .....|+|.| ++++++ +..+|.|.+++  .++..  ..+.....-......|+++|+   ++.++++-...     +.
T Consensus        31 ~~P~~ia~~p-dG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           31 EVPWALAFLP-DGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             SCEEEEEECT-TSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCceEEEEcC-CCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            3567999999 777555 45669999988  44321  111111112456899999993   24544444432     56


Q ss_pred             EEEEeccc
Q 022590          124 VKIWSMKE  131 (294)
Q Consensus       124 i~~wd~~~  131 (294)
                      |..++...
T Consensus       107 v~r~~~~~  114 (352)
T 2ism_A          107 VVRLRHLG  114 (352)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEeCC
Confidence            66666653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.86  E-value=3.5  Score=31.74  Aligned_cols=75  Identities=15%  Similarity=0.130  Sum_probs=43.7

Q ss_pred             cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc-eEEEeeccCCCCCceeEEEEecC---CCceEEeeec---C----C
Q 022590           54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI-CILIFAGAGGHRNEVLSVDFHPS---DIYRIASCGM---D----N  122 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~l~~~~~---~~~~l~~~~~---d----g  122 (294)
                      .....|+|.| ++++++ +..+|.|++++. .++ .+..+.....-......|+++|+   ++.++++-..   +    +
T Consensus        29 ~~P~~ia~~p-dG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           29 EVPWSIAPLG-GGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             SCEEEEEEEE-TTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCeEEEEcC-CCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            4568899999 777555 556699999873 454 22211111112356899999993   3554444432   2    4


Q ss_pred             cEEEEeccc
Q 022590          123 TVKIWSMKE  131 (294)
Q Consensus       123 ~i~~wd~~~  131 (294)
                      .|..|+...
T Consensus       106 ~v~r~~~~~  114 (354)
T 3a9g_A          106 RVIRGRLDG  114 (354)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEECC
Confidence            566666543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.88  E-value=6  Score=32.64  Aligned_cols=72  Identities=14%  Similarity=0.097  Sum_probs=51.0

Q ss_pred             eeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc-----------eeeeeccccccCCCeEEEEEccCCCEEEEeccCCc
Q 022590          217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP-----------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA  285 (294)
Q Consensus       217 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  285 (294)
                      ...+.++|+|+ .++++|-.+.++.++|++....           ......   .-.......+|.++|....|---|..
T Consensus       325 PHGv~vsPDGk-yi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~---e~GlGPlHt~Fd~~G~aYTtlfidSq  400 (638)
T 3sbq_A          325 PHGCNTSSDGK-YFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP---ELGLGPLHTTFDGRGNAYTTLFIDSQ  400 (638)
T ss_dssp             CCCEEECTTSC-EEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC---BCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred             CcceeeCCCCC-EEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec---cCCCcccEEEECCCCceEeeeeecce
Confidence            45688999997 4667778899999999985211           111111   12245678999999966666678999


Q ss_pred             EEEEecC
Q 022590          286 IWRWDAI  292 (294)
Q Consensus       286 i~vw~~~  292 (294)
                      |--|++.
T Consensus       401 vvkWni~  407 (638)
T 3sbq_A          401 VVKWNME  407 (638)
T ss_dssp             EEEEEHH
T ss_pred             EEEEecc
Confidence            9999975

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.21  E-value=3.5  Score=36.66  Aligned_cols=76  Identities=12%  Similarity=0.108  Sum_probs=47.6

Q ss_pred             ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCC--CCCceeEEEEecCCCceEEee---ecCCcEEEEec
Q 022590           55 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG--HRNEVLSVDFHPSDIYRIASC---GMDNTVKIWSM  129 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~l~~~---~~dg~i~~wd~  129 (294)
                      .+.+++..+ +..++++-+.|+++|+|++.+++++........  ...........|..+.++.+-   ..+|..++|.+
T Consensus       237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~  315 (950)
T 4gq2_M          237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL  315 (950)
T ss_dssp             CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred             eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence            467777777 778999999999999999999998887643211  111112223334333333322   34577778876


Q ss_pred             cc
Q 022590          130 KE  131 (294)
Q Consensus       130 ~~  131 (294)
                      ..
T Consensus       316 ~~  317 (950)
T 4gq2_M          316 NA  317 (950)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1

Probab=88.95  E-value=2.5  Score=34.22  Aligned_cols=73  Identities=14%  Similarity=0.120  Sum_probs=47.5

Q ss_pred             CeeEEEEccc----CCcceEEEEcCCCeEEEEeccCCC------ceeeeeccccccCCCeEEEEEccCCCEEEEeccCCc
Q 022590          216 DIWFIKFSCD----FHYNAAAIGNREGKIFVWELQSSP------PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA  285 (294)
Q Consensus       216 ~i~~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~  285 (294)
                      ..++++...-    +.+..+..|+.+|.|.-.-+....      ......+.......+|..|.++++..+|..++.++.
T Consensus       405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V  484 (495)
T 1q47_A          405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV  484 (495)
T ss_dssp             CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred             ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence            3566665543    556788899999988755443221      112222222123478999999999999999999887


Q ss_pred             EEE
Q 022590          286 IWR  288 (294)
Q Consensus       286 i~v  288 (294)
                      ++|
T Consensus       485 ~~v  487 (495)
T 1q47_A          485 AQL  487 (495)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*

Probab=87.53  E-value=2.6  Score=34.55  Aligned_cols=73  Identities=18%  Similarity=0.155  Sum_probs=50.4

Q ss_pred             CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc--eeeeeccccccCCCeE-EEEEccCCCEEEEeccCCcEEE
Q 022590          216 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP--VLIARLSHAQSKSPIR-QTAMSYDGSTILSCCEDGAIWR  288 (294)
Q Consensus       216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~dg~i~v  288 (294)
                      .++.++....+.+..+..|+.+|.|.-..+.....  .....+.......+|. .|.+++++.+|..++.++.++|
T Consensus       401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv  476 (539)
T 3al9_A          401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV  476 (539)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred             ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence            46677777766677899999999988776654321  1222222223346785 8999999999999988876654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=86.35  E-value=9.6  Score=29.25  Aligned_cols=83  Identities=12%  Similarity=0.067  Sum_probs=49.2

Q ss_pred             eeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc--ccccCCCeEEEEEccC---CCEEEEe-
Q 022590          207 LQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS--HAQSKSPIRQTAMSYD---GSTILSC-  280 (294)
Q Consensus       207 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~---~~~l~s~-  280 (294)
                      +..+...-...+.++|.|++  .++++-...|.|++++...++......+.  ..........|+++|+   +.+|... 
T Consensus        24 ~~~va~gL~~P~~ia~~pdG--~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGG--DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             eEEeecCCCCceEEEEcCCC--cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            33444444567899999998  46666555899999987655433222221  1123456889999995   3344332 


Q ss_pred             --ccCCcEEEEec
Q 022590          281 --CEDGAIWRWDA  291 (294)
Q Consensus       281 --~~dg~i~vw~~  291 (294)
                        ..++.|.-|.+
T Consensus       102 t~~~~~~v~R~~~  114 (347)
T 3das_A          102 TSASDNRIVRMLY  114 (347)
T ss_dssp             ECSSSEEEEEEEB
T ss_pred             ecCCCCEEEEEEe
Confidence              23444554544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.56  E-value=22  Score=31.76  Aligned_cols=39  Identities=10%  Similarity=0.132  Sum_probs=30.6

Q ss_pred             ceeEEEEecCCCceEEeeecCCcEEEEeccccccccccce
Q 022590          101 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF  140 (294)
Q Consensus       101 ~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  140 (294)
                      .+.++...+ +..++++-+.|+++|+|++.++.......+
T Consensus       237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            467777776 778899999999999999999765544433

>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}

Probab=83.90  E-value=10  Score=32.01  Aligned_cols=72  Identities=15%  Similarity=0.160  Sum_probs=45.7

Q ss_pred             eeEEEE----cccCCcceEEEEcCCCeEEEEec-cCCC-----ceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcE
Q 022590          217 IWFIKF----SCDFHYNAAAIGNREGKIFVWEL-QSSP-----PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI  286 (294)
Q Consensus       217 i~~~~~----~~~~~~~~l~~~~~dg~i~i~d~-~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  286 (294)
                      .+.++.    .+++.+..+..|+.+|.|.-.-+ ....     ...+..+.......+|..|.++++.++|..++.++.+
T Consensus       414 lT~IaVd~v~~~~g~ytVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~  493 (667)
T 4gz8_A          414 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA  493 (667)
T ss_dssp             EEEEEEEEEECSSCEEEEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred             eeEEEEEEEecCCCcEEEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEE
Confidence            445554    23454567889999999864322 2211     1122222222455789999999999999999998876


Q ss_pred             EE
Q 022590          287 WR  288 (294)
Q Consensus       287 ~v  288 (294)
                      +|
T Consensus       494 kV  495 (667)
T 4gz8_A          494 QL  495 (667)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=83.42  E-value=4.5  Score=33.36  Aligned_cols=72  Identities=11%  Similarity=0.069  Sum_probs=51.3

Q ss_pred             cceEEEEeCCCCCceEEE-eeCCCcEEEEEcCCC------ce-------EEEeeccCCCCCceeEEEEecCCCceEEeee
Q 022590           54 DSINEIRTQPLKPSLVVS-ASKDESVRLWNVQTG------IC-------ILIFAGAGGHRNEVLSVDFHPSDIYRIASCG  119 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s-~~~dg~i~vwd~~~~------~~-------~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~  119 (294)
                      .....+..+| ++++++. |-.+.++.++|++.-      +.       .....    -.......+|.+ +++...+.-
T Consensus       323 ksPHGv~vsP-DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e----~GlGPlHt~Fd~-~G~aYTtlf  396 (638)
T 3sbq_A          323 KNPHGCNTSS-DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE----LGLGPLHTTFDG-RGNAYTTLF  396 (638)
T ss_dssp             SSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB----CCSCEEEEEECS-SSEEEEEET
T ss_pred             CCCcceeeCC-CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc----CCCcccEEEECC-CCceEeeee
Confidence            3456788999 6666555 556889999998742      11       11221    345678899998 777677777


Q ss_pred             cCCcEEEEeccc
Q 022590          120 MDNTVKIWSMKE  131 (294)
Q Consensus       120 ~dg~i~~wd~~~  131 (294)
                      .|..|..|++..
T Consensus       397 idSqvvkWni~~  408 (638)
T 3sbq_A          397 IDSQVVKWNMEE  408 (638)
T ss_dssp             TTTEEEEEEHHH
T ss_pred             ecceEEEEeccH
Confidence            999999999986

>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}

Probab=83.23  E-value=7.6  Score=31.76  Aligned_cols=72  Identities=13%  Similarity=0.061  Sum_probs=48.1

Q ss_pred             CeeEEEEcccCCcceEEEEcCCCeEEEEecc-CCCceeeeeccccccCCCe-EEEEEccCCCEEEEeccCCcEEE
Q 022590          216 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQ-SSPPVLIARLSHAQSKSPI-RQTAMSYDGSTILSCCEDGAIWR  288 (294)
Q Consensus       216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~s~~~dg~i~v  288 (294)
                      ..+.++......+..+..|+.+|.|.-.-+. .........+.. ....+| ..|.++++..+|..++.++.++|
T Consensus       388 ~lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~~ee~~v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~v  461 (528)
T 3ol2_B          388 QLTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHPYSTQSI-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKV  461 (528)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCCSEEEES-STTSCCCSCCEECTTSSEEEEECSSCEEEE
T ss_pred             ceEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeEEeeecc-CCCCcceeeEEEecCCCEEEEEeCCEEEEE
Confidence            4666666655555778889999998865554 222222222222 334577 48999999999999998887765

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}

Probab=80.03  E-value=12  Score=31.14  Aligned_cols=61  Identities=7%  Similarity=0.058  Sum_probs=40.7

Q ss_pred             cceEEEEcCCCeEEEEeccCCC----ceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEE
Q 022590          228 YNAAAIGNREGKIFVWELQSSP----PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR  288 (294)
Q Consensus       228 ~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v  288 (294)
                      +..+..|+.+|.|.-.-+....    ......+.......+|..|.++++...|..++.++.++|
T Consensus       380 ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV  444 (590)
T 3nvq_A          380 FHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV  444 (590)
T ss_dssp             EEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred             eEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence            4578889999998755443322    112222222134568999999999999999988887665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-11
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-09
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-10
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	9e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (171), Expect = 1e-14
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 5/118 (4%)

Query: 10  SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV 69
                    +    PFL++G  +  I++ DVS      + VGH + +  +         +
Sbjct: 204 EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFI 262

Query: 70  VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW 127
           +S + D+++R+W+ +   C+        H + V S+DFH      + +  +D TVK+W
Sbjct: 263 LSCADDKTLRVWDYKNKRCMKTLN---AHEHFVTSLDFHK-TAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (162), Expect = 2e-13
 Identities = 51/308 (16%), Positives = 97/308 (31%), Gaps = 61/308 (19%)

Query: 24  PFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP----------------- 66
             +V+   +  I+V D       ++  GH DS+ +I                        
Sbjct: 30  SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89

Query: 67  ------------------------SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEV 102
                                     +VSAS+D+++++W VQTG C+  F    GHR  V
Sbjct: 90  GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF---TGHREWV 146

Query: 103 LSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS 162
             V  +  D   IASC  D TV++W +        +      +              I+ 
Sbjct: 147 RMVRPNQ-DGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISE 204

Query: 163 VHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKF 222
              +    +   G F+LS S D  I +W+           T   L      +  +  + F
Sbjct: 205 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVS---------TGMCLMTLVGHDNWVRGVLF 255

Query: 223 SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE 282
                +  +     +  + VW+ ++   +          +  +           +++   
Sbjct: 256 HSGGKFILS--CADDKTLRVWDYKNKRCMKTLN----AHEHFVTSLDFHKTAPYVVTGSV 309

Query: 283 DGAIWRWD 290
           D  +  W+
Sbjct: 310 DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.4 bits (137), Expect = 4e-10
 Identities = 42/272 (15%), Positives = 82/272 (30%), Gaps = 37/272 (13%)

Query: 48  SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 107
           +  GH   +  +   P+   ++VSAS+D ++++W+ +TG          GH + V  + F
Sbjct: 12  ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLK---GHTDSVQDISF 67

Query: 108 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWT------------------DLPSKF 149
             S     +                                             D   K 
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 150 PTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEP-------KMKEQSPG 200
                 + V   + H  +V   R    G  I S S D  + +W         +++E    
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187

Query: 201 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAI--GNREGKIFVWELQSSPPVLIARLSH 258
                   +             +         +  G+R+  I +W++ +   +    ++ 
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL----MTL 243

Query: 259 AQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290
               + +R       G  ILSC +D  +  WD
Sbjct: 244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 275

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 9e-11
 Identities = 38/299 (12%), Positives = 82/299 (27%), Gaps = 36/299 (12%)

Query: 24  PFLVAGGINGIIRVIDVSNEKL------------HKSFVGHGDSINEIRTQPLKPSLVVS 71
            F V+   +G ++V D                  HKS + H D +  I     +  LV +
Sbjct: 25  SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84

Query: 72  ASKDESVRLWNVQTGICILIFAG-------AGGHRNEVLSVDFHPSDIY----RIASCGM 120
            S    +  + +                  +   ++   ++ +  S+      R+ +  +
Sbjct: 85  TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 144

Query: 121 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGD-FIL 179
             T  IW       +     + +   +  PT  +Q  V      S +           I 
Sbjct: 145 KGTTYIWKF-----HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIA 199

Query: 180 SKSVDNEIVL-------WEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAA 232
           +   +  + +            + Q      ++ ++                   +    
Sbjct: 200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 259

Query: 233 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291
           +   E    +  L        A L      S +   + +  G T+ S   DG +  WD 
Sbjct: 260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 318

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 28/258 (10%), Positives = 67/258 (25%), Gaps = 28/258 (10%)

Query: 51  GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG---------ICILIFAGAGGHRNE 101
            H   I  +       S  VS S D  +++W+ +               +      H + 
Sbjct: 12  AHDADIFSVS---ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 102 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA 161
           + +++    ++  +A+      +  +         E      +      +   +   +  
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYR---ITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 162 SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQ---------SPGEGTADILQKYPV 212
                    +R L   +++  V     +W+               SP       ++    
Sbjct: 126 KWG---ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182

Query: 213 PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 272
           P      +  S      A    N   +I             ++ S   + + IR    S 
Sbjct: 183 PSQFATSVDISER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241

Query: 273 DGSTILSCCEDGAIWRWD 290
            GS +    +  +     
Sbjct: 242 QGSLLAIAHDSNSFGCIT 259

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 1e-05
 Identities = 30/314 (9%), Positives = 69/314 (21%), Gaps = 46/314 (14%)

Query: 10  SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP------ 63
                      +    +     +G +    ++ E   K  +     + +   +       
Sbjct: 67  DVLQAIERDAFELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125

Query: 64  --------LKPSLVVSASKDESVRLWNVQTGICILI---------------FAGAGGHRN 100
                   L    +V+     +  +W                                  
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185

Query: 101 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI 160
              SVD     +  IA+   + TV+I  +             +                 
Sbjct: 186 FATSVDISERGL--IATGFNNGTVQISELSTLRPLYNFESQHS------------MINNS 231

Query: 161 ASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKE--QSPGEGTADILQKYPVPECDIW 218
            S+ S        L       +    I L+E +  E   S    T              W
Sbjct: 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 291

Query: 219 FIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTIL 278
            +  S +           +GK+  W++++   +    +     +      A+   G ++ 
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351

Query: 279 SCCEDGAIWRWDAI 292
                   +     
Sbjct: 352 EPGVFDVKFLKKGW 365

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.4 bits (142), Expect = 1e-10
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 25  FLVAGGINGIIRV--IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82
               G  +   R+  +    E +  S       I  +        L+++   D +  +W+
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWD 298

Query: 83  VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 128
                   + A   GH N V  +     D   +A+   D+ +KIW+
Sbjct: 299 ALKADRAGVLA---GHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 30/192 (15%), Positives = 57/192 (29%), Gaps = 28/192 (14%)

Query: 1   MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
                        V            V+G  +   ++ DV      ++F GH   IN I 
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233

Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 120
             P   +   + S D + RL++++    + +          + SV F  S    + +   
Sbjct: 234 FFP-NGNAFATGSDDATCRLFDLRADQEL-MTYSHDNIICGITSVSFSKSGRL-LLAGYD 290

Query: 121 DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI 178
           D    +W   +                            + + H N V C      G  +
Sbjct: 291 DFNCNVWDALKAD-----------------------RAGVLAGHDNRVSCLGVTDDGMAV 327

Query: 179 LSKSVDNEIVLW 190
            + S D+ + +W
Sbjct: 328 ATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.5 bits (119), Expect = 8e-08
 Identities = 37/264 (14%), Positives = 81/264 (30%), Gaps = 22/264 (8%)

Query: 42  NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 101
             +  ++  GH   I  +        L+VSAS+D  + +W+  T   +          + 
Sbjct: 44  QMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIPL---RSSW 99

Query: 102 VLSVDFHPSD--IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF 159
           V++  + PS   +       + +   + + +       +    T   S          V 
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVT 159

Query: 160 IASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTAD------------IL 207
            +   +  +                 +++        +    G  D              
Sbjct: 160 SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219

Query: 208 QKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQ 267
           Q +   E DI  I F  + +    A G+ +    +++L++   ++     H      I  
Sbjct: 220 QTFTGHESDINAICFFPNGNA--FATGSDDATCRLFDLRADQELMTYS--HDNIICGITS 275

Query: 268 TAMSYDGSTILSCCEDGAIWRWDA 291
            + S  G  +L+  +D     WDA
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDA 299

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 1   MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
                  +     ++          L+AG  +    V D           GH + ++ + 
Sbjct: 260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319

Query: 61  TQPLKPSLVVSASKDESVRLWN 82
                   V + S D  +++WN
Sbjct: 320 VTD-DGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 23/177 (12%), Positives = 53/177 (29%), Gaps = 38/177 (21%)

Query: 116 ASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL- 174
            S   D + K+W ++E                              + H + ++   +  
Sbjct: 200 VSGACDASAKLWDVREG-----------------------MCRQTFTGHESDINAICFFP 236

Query: 175 -GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI 233
            G+   + S D    L++ +  ++            +    C I  + FS       A  
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMT-------YSHDNIICGITSVSFSKSGRLLLA-- 287

Query: 234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290
           G  +    VW+   +    +    H    + +    ++ DG  + +   D  +  W+
Sbjct: 288 GYDDFNCNVWDALKADRAGVLA-GH---DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 19/123 (15%)

Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP-----------SLVVSAS 73
            +V+G ++  +++ ++ N               E+     K              ++S S
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327

Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS-----DIYRIASCGMDNTVKIWS 128
           KD  V  W+ ++G  +L+     GHRN V+SV          +    A+   D   +IW 
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQ---GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

Query: 129 MKE 131
            K+
Sbjct: 385 YKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 25/191 (13%)

Query: 107 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN 166
             P D   IA+  +D  V++W                D  + F  + +       + H +
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVW----------------DSETGFLVERLDSENESGTGHKD 255

Query: 167 YVDCNRWL--GDFILSKSVDNEIVLW---EPKMKEQSPGEGTADILQKYPVPECDIWFIK 221
            V    +   G  ++S S+D  + LW       K  S    +      Y   +  +  + 
Sbjct: 256 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 315

Query: 222 FSCDFHYNAAAIGNREGKIFVWELQSSPPV--LIARLSHAQSKSPIRQTAMSYDGSTILS 279
            + +  Y     G+++  +  W+ +S  P+  L    +   S +    +++  + +   +
Sbjct: 316 TTQNDEY--ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 280 CCEDGAIWRWD 290
              D     W 
Sbjct: 374 GSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 43/202 (21%), Positives = 64/202 (31%), Gaps = 49/202 (24%)

Query: 16  WACNVDGIPFLVAGGINGIIRVIDVSNEKLH-------KSFVGHGDSINEIRTQPLKPSL 68
            A +     ++ AG ++  +RV D     L        +S  GH DS+  +         
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQS 268

Query: 69  VVSASKDESVRLWNVQTGICILIFAGAGGH---------RNEVLSVDFHPSDIYRIASCG 119
           VVS S D SV+LWN+Q                       ++ VLSV    +D Y I S  
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY-ILSGS 327

Query: 120 MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----- 174
            D  V  W  K                          P+ +   H N V           
Sbjct: 328 KDRGVLFWDKKSGN-----------------------PLLMLQGHRNSVISVAVANGSSL 364

Query: 175 ---GDFILSKSVDNEIVLWEPK 193
               +   + S D +  +W+ K
Sbjct: 365 GPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 5e-07
 Identities = 35/321 (10%), Positives = 89/321 (27%), Gaps = 55/321 (17%)

Query: 19  NVDGIPFLVAGGINGIIRVIDVSNEK-----LHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           +   +P  +    N    + + +  +     LHKS   H   +  ++        + +  
Sbjct: 24  DSQSVPDALKKQTNDYYILYNPALPREIDVELHKSL-DHTSVVCCVKFSN-DGEYLATGC 81

Query: 74  KDESVRLWNVQTGICILIFAG---------------AGGHRNEVLSVDFHPSDIYRIASC 118
            +++ +++ V  G  +   +                +      + SV F P   +     
Sbjct: 82  -NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140

Query: 119 GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW----- 173
                            + +          +     +             D         
Sbjct: 141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 200

Query: 174 ---------------LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIW 218
                           G +I + S+D  + +W+   +     E      +     +  ++
Sbjct: 201 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD--SETGFLVERLDSENESGTGHKDSVY 258

Query: 219 FIKFSCDFHYNAAAIGNREGKIFVWELQSS--------PPVLIARLSHAQSKSPIRQTAM 270
            + F+ D        G+ +  + +W LQ++        P      +++   K  +   A 
Sbjct: 259 SVVFTRDGQS--VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316

Query: 271 SYDGSTILSCCEDGAIWRWDA 291
           + +   ILS  +D  +  WD 
Sbjct: 317 TQNDEYILSGSKDRGVLFWDK 337

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKP-----SL 68
           V          ++++G  +  +   D  +        GH +S+  +            ++
Sbjct: 311 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 69  VVSASKDESVRLWNVQ 84
             + S D   R+W  +
Sbjct: 371 FATGSGDCKARIWKYK 386

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (138), Expect = 3e-10
 Identities = 20/240 (8%), Positives = 63/240 (26%), Gaps = 26/240 (10%)

Query: 51  GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS 110
              D I++I+  P   SL++  S D S+ ++        +    +  +++ +L  +F  +
Sbjct: 9   APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 111 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDC 170
              +I    +   +    +    ++   +    +             +            
Sbjct: 68  TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN--------LGICRICKYGDDKLIAAS 119

Query: 171 NRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 230
              L + I  ++  + ++                   +        +    F+ D + + 
Sbjct: 120 WDGLIEVIDPRNYGDGVIAV-----------------KNLNSNNTKVKNKIFTMDTNSSR 162

Query: 231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290
             +G    ++  + L                        +  +         DG +    
Sbjct: 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEF 222

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 6/128 (4%)

Query: 1   MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           +  + +++E +   S    V    F   G      +       +L+         +N I 
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258

Query: 61  TQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGM 120
             P +   + +A  D  +  WN+QT   I  F  A  + + V+ +    +    +     
Sbjct: 259 FSP-RHKFLYTAGSDGIISCWNLQTRKKIKNF--AKFNEDSVVKIACSDN---ILCLATS 312

Query: 121 DNTVKIWS 128
           D+T K  +
Sbjct: 313 DDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 20/306 (6%), Positives = 72/306 (23%), Gaps = 40/306 (13%)

Query: 24  PFLVAGGINGIIRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASKDESVRL 80
             L+    +G + V     +  +   +    +   +            +   +    +  
Sbjct: 24  SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83

Query: 81  WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 140
            ++              +        +    +   +  G+   +   +  +    V+   
Sbjct: 84  VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN 143

Query: 141 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-------------------------- 174
           +                  +    +N       L                          
Sbjct: 144 SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLP 203

Query: 175 --GDFILSKSVDNEIVLW--EPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNA 230
              +     S+D  + +   + +  + +  +  A    +  + + ++ +   S +F    
Sbjct: 204 KEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH 263

Query: 231 AAIGNR--EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR 288
             +     +G I  W LQ+       ++ +    +      ++   + +     D     
Sbjct: 264 KFLYTAGSDGIISCWNLQTR-----KKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKT 318

Query: 289 WDAIPT 294
             AI  
Sbjct: 319 NAAIDQ 324

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 3e-10
 Identities = 34/253 (13%), Positives = 70/253 (27%), Gaps = 12/253 (4%)

Query: 39  DVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGH 98
                K  K   GH D +          + +VS S D ++++W+  TG C+       GH
Sbjct: 2   RRGELKSPKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLV---GH 56

Query: 99  RNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV 158
              V S     + I   ++          + +   T    + T   +             
Sbjct: 57  TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRD 116

Query: 159 FIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPE-CDI 217
               V          +    ++     +                  D   +  +      
Sbjct: 117 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH 176

Query: 218 WFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI 277
               +S  F       G+ +  I VW++++   +      H  +      + M    + +
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI------HTLTGHQSLTSGMELKDNIL 230

Query: 278 LSCCEDGAIWRWD 290
           +S   D  +  WD
Sbjct: 231 VSGNADSTVKIWD 243

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 45/243 (18%)

Query: 12  YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVS 71
           +  +  C       +V+G  + +++V D   E    +  GH + +    +       VVS
Sbjct: 136 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY---SLQFDGIHVVS 192

Query: 72  ASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKE 131
            S D S+R+W+V+TG CI       GH++    ++   +    + S   D+TVKIW +K 
Sbjct: 193 GSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMELKDN---ILVSGNADSTVKIWDIKT 246

Query: 132 FWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE 191
                                           H + V C ++  +F+++ S D  + LW+
Sbjct: 247 GQCLQTLQGPNK--------------------HQSAVTCLQFNKNFVITSSDDGTVKLWD 286

Query: 192 PKMKEQSPGEGTADILQKYPVPECD-----IWFIKFSCDFHYNAAAI--GNREGKIFVWE 244
            K         T + ++     E       +W I+ S      A     G  E K+ V +
Sbjct: 287 LK---------TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

Query: 245 LQS 247
              
Sbjct: 338 FDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 31/285 (10%), Positives = 84/285 (29%), Gaps = 25/285 (8%)

Query: 14  VSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS 73
           V       G   +V+G  +  ++V      K  ++ VGH   +   + +        +  
Sbjct: 19  VITCLQFCG-NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 77

Query: 74  KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
             +       +    +          +         S    +    ++    +  +    
Sbjct: 78  TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV 137

Query: 134 TYVEKSFTWT--------DLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDN 185
             V               D   K      +  +     H+N V   ++ G  ++S S+D 
Sbjct: 138 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDT 197

Query: 186 EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL 245
            I +W+ +             +      +          +   N    GN +  + +W++
Sbjct: 198 SIRVWDVETGNC---------IHTLTGHQSLTS----GMELKDNILVSGNADSTVKIWDI 244

Query: 246 QSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290
           ++   +   +  +         T + ++ + +++  +DG +  WD
Sbjct: 245 KTGQCLQTLQGPNKHQ---SAVTCLQFNKNFVITSSDDGTVKLWD 286

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 67  SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 126
              VS  KD  +  W    G  I          + VLS D    D Y I +   D    +
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKY-IVTGSGDKKATV 332

Query: 127 WS 128
           + 
Sbjct: 333 YE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 28/278 (10%), Positives = 66/278 (23%), Gaps = 10/278 (3%)

Query: 21  DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRL 80
           DG    V    + +I      + +   +   HG+ +  +         V +      V++
Sbjct: 20  DGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISN-PTRHVYTGG-KGCVKV 76

Query: 81  WNVQTGICI--LIFAGAGGHRNEVLSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVE 137
           W++        +         N + S    P     I        ++   +        E
Sbjct: 77  WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE 136

Query: 138 KSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQ 197
            + +     +   +   +      S  +  V            +   +     +      
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196

Query: 198 SPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS 257
               G  D   +           +        +         + V    S+  VL     
Sbjct: 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256

Query: 258 HAQS----KSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291
                   +S +     +Y G   +S  +D  +  W  
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 7e-04
 Identities = 9/83 (10%), Positives = 21/83 (25%), Gaps = 3/83 (3%)

Query: 1   MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
                        +S      G  + V+ G + ++                   S+    
Sbjct: 256 PDKYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCD 313

Query: 61  TQPLKPSLVVSASKDESVRLWNV 83
                   +V+ S D+   ++ V
Sbjct: 314 ISV-DDKYIVTGSGDKKATVYEV 335

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 28/259 (10%), Positives = 66/259 (25%), Gaps = 41/259 (15%)

Query: 67  SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 126
           + +     +  V ++       + +      H  +V  VD+ P D  RI +CG D    +
Sbjct: 20  TQIAICPNNHEVHIYEKSGNKWVQVHE-LKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYV 77

Query: 127 WSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN-------------------- 166
           W++K             +  ++          F     S                     
Sbjct: 78  WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK 137

Query: 167 -------YVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF 219
                             + + S D +  ++   +KE            K P  E     
Sbjct: 138 KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 197

Query: 220 IKF-------SCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY 272
                         + +  A  + +  + + +            + A    P+       
Sbjct: 198 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA----VATLASETLPLLAVTFIT 253

Query: 273 DGSTILSCCEDGA-IWRWD 290
           + S + +  +    ++ +D
Sbjct: 254 ESSLVAAGHDCFPVLFTYD 272

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 14/111 (12%)

Query: 26  LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85
           LVA G +    +    +     SF G  D   +              +  E  +  + + 
Sbjct: 257 LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ--------RGLTARERFQNLDKKA 308

Query: 86  GICILIFAGAG---GHRNEVLSVDFHP---SDIYRIASCGMDNTVKIWSMK 130
                  AGAG    H+N V  +       +   +  + GMD  + IW ++
Sbjct: 309 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 4/74 (5%)

Query: 217 IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGST 276
           I    ++ D      AI     ++ ++E   +  V +  L   +    +     + D + 
Sbjct: 10  ISCHAWNKDRTQ--IAICPNNHEVHIYEKSGNKWVQVHELK--EHNGQVTGVDWAPDSNR 65

Query: 277 ILSCCEDGAIWRWD 290
           I++C  D   + W 
Sbjct: 66  IVTCGTDRNAYVWT 79

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 5e-08
 Identities = 41/291 (14%), Positives = 78/291 (26%), Gaps = 50/291 (17%)

Query: 47  KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD 106
           +      ++   +         +VS  +D ++++W+  T  C  I     GH   VL + 
Sbjct: 6   QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT---GHTGSVLCLQ 62

Query: 107 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV--- 163
           +    I   +S        + + +   T +        L                +V   
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 164 --------------HSNYVDCNRWLGDFILSKSVDNEIVLWEPK-MKEQSPGEGTADILQ 208
                         H   V+   +   +I+S S D  I +W     +      G    + 
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182

Query: 209 KYPVPECDI--------------------------WFIKFSCDFHYNAAAIGNREGKIFV 242
                +  +                            +     F       G  +GKI V
Sbjct: 183 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 242

Query: 243 WELQSSPPVLI---ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290
           W+L ++                +   R   + +D   I+S   D  I  WD
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 8e-05
 Identities = 30/213 (14%), Positives = 63/213 (29%), Gaps = 33/213 (15%)

Query: 32  NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI 91
           +  I V D+++                +         +VSAS D ++++WN  T   +  
Sbjct: 114 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT 173

Query: 92  FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT 151
             G          +         + S   DNT+++W ++                     
Sbjct: 174 LNGHKRG------IACLQYRDRLVVSGSSDNTIRLWDIECGA------------------ 209

Query: 152 KYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP 211
                 + +   H   V C R+    I+S + D +I +W+               L+   
Sbjct: 210 -----CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 264

Query: 212 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE 244
                ++       F        + +  I +W+
Sbjct: 265 EHSGRVF----RLQFDEFQIVSSSHDDTILIWD 293

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (119), Expect = 6e-08
 Identities = 24/271 (8%), Positives = 66/271 (24%), Gaps = 10/271 (3%)

Query: 25  FLVAGGINGIIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWN 82
           +++A      + VID     + K       G +       P       + +K ES+   +
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 83  VQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 142
           + TG  +     +              S   +  +          +  E        +  
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 143 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEG 202
             L  +   +  +    +A    +         D  +       +V  +P    ++    
Sbjct: 123 ETLSRRKAFEAPRQITMLA-WARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 203 TADILQKYPVPECDIWFIKFSCDFHYNAAAI--GNREGKIFVWELQSSPPVLIARLSHAQ 260
             D+L  +   E              +            +   +L++    +        
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 261 SKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291
                   + + + +   +      +  +D 
Sbjct: 242 -----FYFSTAVNPAKTRAFGAYNVLESFDL 267

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 12/121 (9%), Positives = 30/121 (24%), Gaps = 8/121 (6%)

Query: 10  SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV 69
              T  +    D  P        G++ +   + E   +               P K    
Sbjct: 197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK---T 253

Query: 70  VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 129
            +      +  ++++    I          +   SV+    D   +   G    +  +  
Sbjct: 254 RAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVST-DGSTVWLGGALGDLAAYDA 308

Query: 130 K 130
           +
Sbjct: 309 E 309

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 8e-08
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 67  SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 126
               +   D ++R+W+V T  C+  +      +     V    +   RI S  +D T+  
Sbjct: 264 QKFATVGADATIRVWDVTTSKCVQKWTL-DKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 127 WSM 129
           + +
Sbjct: 323 YEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 36/308 (11%), Positives = 79/308 (25%), Gaps = 33/308 (10%)

Query: 13  TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK--SFVGH-GDSINEIRTQPLKPS-L 68
           T   + +          G +  +R +D  + K+     F GH    +  ++  P+K S  
Sbjct: 20  TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79

Query: 69  VVSASKDESVRLWNVQTGICILIFAGAG-----GHRNEVLSVDFHPSDIYRIASCGMDNT 123
           + S  +   V +W                         +  + +   +  R+   G    
Sbjct: 80  LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRD 138

Query: 124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSV 183
                +           +               P+   +V  +          F  S S 
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 184 DN--------------------EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS 223
                                  I +   +      G+    +       E     I   
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 224 CDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDG-STILSCCE 282
                   A    +  I VW++ +S    + + +  + +   +Q  +   G   I+S   
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSK--CVQKWTLDKQQLGNQQVGVVATGNGRIISLSL 316

Query: 283 DGAIWRWD 290
           DG +  ++
Sbjct: 317 DGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 1   MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
           + Y++  +E      +A +          G +  IRV DV+  K  + +      +   +
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 61  TQ--PLKPSLVVSASKDESVRLWNV 83
                     ++S S D ++  + +
Sbjct: 301 VGVVATGNGRIISLSLDGTLNFYEL 325

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 36/269 (13%), Positives = 74/269 (27%), Gaps = 13/269 (4%)

Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
           F V     G I ++D  ++K+ K     G +++  R        ++   +D  + + ++ 
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVI-DTGYAVHISRMSA-SGRYLLVIGRDARIDMIDLW 91

Query: 85  TGICILI--FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTW 142
                 +         R+   S      D Y IA         I   +        S   
Sbjct: 92  AKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRG 151

Query: 143 TDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM-KEQSPGE 201
             + ++      +    IAS        N      +L  +  +   L    +       +
Sbjct: 152 MTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD 211

Query: 202 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQS 261
           G  D   +Y +   +        D      +     GK       ++             
Sbjct: 212 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN--------FVHPK 263

Query: 262 KSPIRQTAMSYDGSTILSCCEDGAIWRWD 290
             P+  T+   DGS  L   +     ++ 
Sbjct: 264 YGPVWSTSHLGDGSISLIGTDPKNHPQYA 292

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 27/277 (9%), Positives = 71/277 (25%), Gaps = 12/277 (4%)

Query: 21  DGIPFLVAGGINGIIRVIDVSNEKLHK------SFVGHGDSINEIRTQPLKPSLVVSASK 74
           D     V     G I  ID+   K              G S+      P    +  + + 
Sbjct: 50  DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 109

Query: 75  DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT 134
            + +    V     + +F+ A G   + +     P  +Y +     D ++ +     +  
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVY-LMRAADDGSLYVAGPDIYKM 168

Query: 135 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKM 194
            V+       LP +   +       +     +    + +   + +++  D++       +
Sbjct: 169 DVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228

Query: 195 KEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA 254
                                             +   I     ++  ++L+     LI 
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ--RKLIK 286

Query: 255 RLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291
             +   +       A    G  +        +  ++ 
Sbjct: 287 AANLDHT---YYCVAFDKKGDKLYLGGTFNDLAVFNP 320

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 25/275 (9%), Positives = 65/275 (23%), Gaps = 13/275 (4%)

Query: 25  FLVAGGINGIIRVIDVSNEKLHKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV 83
           +++       + V+DV+++ ++KS  +            P   +  V  +    +   ++
Sbjct: 10  YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 69

Query: 84  QTGICILIFAGAG---GHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF 140
            T         +         + S    P     + +                  +E   
Sbjct: 70  DTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNPTQRLNDHYVVKPPRLEVFS 128

Query: 141 TWTD-LPSKFPTKYVQFPVFIASVHSN---YVDCNRWLGDFILSKSVDNEIVLWEPKMKE 196
           T          T  +   V++     +   YV         + +      + L     K 
Sbjct: 129 TADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKG 188

Query: 197 QSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL 256
            S  +       + P  E  + +            A  +        +L++         
Sbjct: 189 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 248

Query: 257 SHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291
                         S      +       + ++D 
Sbjct: 249 DL---TELYFTGLRSPKDPNQIYGV-LNRLAKYDL 279

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 13/129 (10%), Positives = 34/129 (26%), Gaps = 6/129 (4%)

Query: 2   CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRT 61
            +   + E     + A   D         +      +D+   K H         +     
Sbjct: 199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258

Query: 62  QPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD 121
           +  K    +       +  ++++    I     A    +    V F      ++   G  
Sbjct: 259 RSPKDPNQIYGV-LNRLAKYDLKQRKLI----KAANLDHTYYCVAFDK-KGDKLYLGGTF 312

Query: 122 NTVKIWSMK 130
           N + +++  
Sbjct: 313 NDLAVFNPD 321

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (114), Expect = 2e-07
 Identities = 27/255 (10%), Positives = 60/255 (23%), Gaps = 19/255 (7%)

Query: 42  NEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNE 101
           ++++ K+  GH   I  +   PL     +S S D  +  W+  +            H N 
Sbjct: 2   HDEVLKTISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSSMHQ--------DHSNL 48

Query: 102 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD------LPSKFPTKYVQ 155
           ++S+D   +  Y   S      V   +  EF +  + +    D                 
Sbjct: 49  IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQS 108

Query: 156 FPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPEC 215
           F   I          +              E    +                 +      
Sbjct: 109 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 168

Query: 216 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS 275
            I   +           I   + +    +            + +   +         +  
Sbjct: 169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228

Query: 276 TILSCCEDGAIWRWD 290
            + +   D  I+ + 
Sbjct: 229 LVATGSLDTNIFIYS 243

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 1e-06
 Identities = 11/59 (18%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 70  VSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWS 128
            + S D ++ +++V+  + I+       H++ V ++ +       + S G D  +K W+
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPS--TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 1   MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSN-EKLHKSFVGHGDSINEI 59
              ++                    +  G ++  I +  V    K+ K+   H D +N +
Sbjct: 205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL 264

Query: 60  RTQPLKPSLVVSASKDESVRLWNV 83
             +   PS +VS+  D  ++ WNV
Sbjct: 265 LWET--PSTLVSSGADACIKRWNV 286

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.7 bits (114), Expect = 3e-07
 Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 67  SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKI 126
           + + SAS D+++++WNV T              ++ L + +       + S   +  +  
Sbjct: 251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ---ALVSISANGFINF 307

Query: 127 WSM 129
            + 
Sbjct: 308 VNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.4 bits (108), Expect = 1e-06
 Identities = 24/284 (8%), Positives = 58/284 (20%), Gaps = 24/284 (8%)

Query: 26  LVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT 85
            +       +  + V +    + +  H       +T P       S     +VR+W+   
Sbjct: 31  KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQ 89

Query: 86  GICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL 145
              I +          V  + +        A            + +  T           
Sbjct: 90  TTHI-LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA 148

Query: 146 PSKFPTKYVQFPVFIASVHSNYVDCNRWLGDF-------------------ILSKSVDNE 186
            +    K  +    I+    N V                              S      
Sbjct: 149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 208

Query: 187 IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQ 246
                         +                     +        A  + +  I +W + 
Sbjct: 209 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 268

Query: 247 SSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290
           +        +     +   +Q  + +    ++S   +G I   +
Sbjct: 269 TLKVEKTIPVGT---RIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 1   MCYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIR 60
              +     S        + DG   + +   +  I++ +V+  K+ K+        ++  
Sbjct: 229 DDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287

Query: 61  TQPLKPSLVVSASKDESVRLWN 82
                   +VS S +  +   N
Sbjct: 288 GIIWTKQALVSISANGFINFVN 309

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 7e-07
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 26/196 (13%)

Query: 48  SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF 107
           +  GH  S+  I     + + V++ + D+ +R+++      +L  +   GH   V ++ +
Sbjct: 7   TLRGHMTSV--ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS---GHDGGVWALKY 61

Query: 108 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY 167
                  + S   D TV++W +K+           +                        
Sbjct: 62  AHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNS-------------------TVRCL 100

Query: 168 VDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFH 227
                    +I++ S DN + +W+   +   P  G             +  +       H
Sbjct: 101 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160

Query: 228 YNAAAIGNREGKIFVW 243
             +    +  G I V 
Sbjct: 161 MASVRTVSGHGNIVVS 176

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 34/173 (19%), Positives = 72/173 (41%), Gaps = 4/173 (2%)

Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
           +++ G  + +IRV D  N+K      GH   +  ++       ++VS S D +VR+W+++
Sbjct: 25  YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIK 82

Query: 85  TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 144
            G C  +F G       +  V++         +   DNT+ +W + +  +  +       
Sbjct: 83  KGCCTHVFEGHNSTVRCLDIVEYKNIKYI--VTGSRDNTLHVWKLPKESSVPDHGEEHDY 140

Query: 145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQ 197
                  +   + V +   H   V      G+ ++S S DN +++W+    + 
Sbjct: 141 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKC 193

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 7e-06
 Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 46  HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSV 105
            + F  H  +++ I T  +  +++VS S +    ++N+++G  +          +++ SV
Sbjct: 274 SRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN--ILKDADQIWSV 330

Query: 106 DFHPSDIYRIASCGMDNTVKIW 127
           +F       +A+   D    + 
Sbjct: 331 NFKGK--TLVAAVEKDGQSFLE 350

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.3 bits (110), Expect = 9e-07
 Identities = 30/299 (10%), Positives = 68/299 (22%), Gaps = 57/299 (19%)

Query: 44  KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 103
            + +   GH  +I  + +       + SA  +  +  W++ TGI   +F     H   + 
Sbjct: 3   SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVF--PDVHATMIT 59

Query: 104 SVDFHPSDIYRIASCGM------------------------------------------D 121
            +           S                                              
Sbjct: 60  GIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 119

Query: 122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSK 181
             + I+S  +         +     S                       +      I+  
Sbjct: 120 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP 179

Query: 182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF----------HYNAA 231
           +    +          +  +    I               ++                  
Sbjct: 180 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 239

Query: 232 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD 290
           A G+ +  + VW +       I     A + S +  + +  + +TI+S  +D  I  W+
Sbjct: 240 ATGSLDNSVIVWNMNKPSDHPIIIK-GAHAMSSVN-SVIWLNETTIVSAGQDSNIKFWN 296

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 13/219 (5%), Positives = 56/219 (25%), Gaps = 31/219 (14%)

Query: 73  SKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF 132
              +++ +++++               +   +  F       +      +          
Sbjct: 156 YVMQAIHVYDMEGRKIFAAT----TENSHDYAPAFDADSKN-LYYLSYRSLDPSPDRVVL 210

Query: 133 WTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEP 192
               E       +P                +     +  + +   + S++ + ++     
Sbjct: 211 NFSFEVVSKPFVIP----------------LIPGSPNPTKLVPRSMTSEAGEYDLNDMYK 254

Query: 193 KMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVL 252
           +    +   G   ++                    Y        +G +  +++++     
Sbjct: 255 RSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQG--APEKGVLLKYDVKTRKVTE 312

Query: 253 IARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA 291
           +         + +    +S D  T++   +DG I+ +  
Sbjct: 313 VK--------NNLTDLRLSADRKTVMVRKDDGKIYTFPL 343

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 8/88 (9%), Positives = 26/88 (29%), Gaps = 10/88 (11%)

Query: 46  HKSFVGHGDSINEIRTQPLKP--SLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVL 103
           ++  +    SI            +    A +   +  ++V+T             +N + 
Sbjct: 266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-------EVKNNLT 318

Query: 104 SVDFHPSDIYRIASCGMDNTVKIWSMKE 131
            +     D   +     D  +  + +++
Sbjct: 319 DLRLSA-DRKTVMVRKDDGKIYTFPLEK 345

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 18/205 (8%), Positives = 45/205 (21%), Gaps = 5/205 (2%)

Query: 27  VAGGINGIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
           +A   +  I V ++++E        V     +  +   P K  L V    +  V  + + 
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 85  TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTD 144
                L FA        +  +       +          V +  +++             
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG- 126

Query: 145 LPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTA 204
                       P                L        +  +       ++   P     
Sbjct: 127 --LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF 184

Query: 205 DILQKYPVPECDIWFIKFSCDFHYN 229
              ++Y     ++       +    
Sbjct: 185 HPNEQYAYCVNELNSSVDVWELKDP 209

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 4/111 (3%)

Query: 25  FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ 84
           F V     G I +ID S  ++       G +++  R        +    +D  V + ++ 
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLW 91

Query: 85  TGICILI--FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW 133
                 +         R+   S      D Y IA         I   +   
Sbjct: 92  MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 142

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.1 bits (89), Expect = 4e-04
 Identities = 31/272 (11%), Positives = 61/272 (22%), Gaps = 11/272 (4%)

Query: 27  VAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG 86
           +A   +  I VIDV++ K+  + +  G +       P    + V+ +    V + +  T 
Sbjct: 6   IANSESDNISVIDVTSNKVTAT-IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN 64

Query: 87  ICILIFAGAGGHRNEVLSVDFHPS------DIYRIASCGMDNTVKIWSMKEFWTYVEKSF 140
             I         +   +S D                     NTV                
Sbjct: 65  NVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS 124

Query: 141 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPG 200
                            V      +     +       ++ + D   V            
Sbjct: 125 PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISV 184

Query: 201 EGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ 260
             T        V                 A      +    V  + +    + AR+    
Sbjct: 185 IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP 244

Query: 261 SKSPIRQTAMSYDGSTIL-SCCEDGAIWRWDA 291
                   A++ DG  +  +      +   D 
Sbjct: 245 D---PAGIAVTPDGKKVYVALSFCNTVSVIDT 273

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.93
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.88
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.87
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.85
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.81
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.7
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.66
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.52
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.49
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.49
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.48
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.39
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.39
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.28
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.28
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.28
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.23
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.18
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.16
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.09
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.06
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.95
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.95
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.87
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.83
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.75
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.6
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.45
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.39
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.37
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.2
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.68
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.66
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.6
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.53
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.44
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.36
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.3
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.05
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.85
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.7
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	96.57
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.37
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.32
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.27
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.24
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.23
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.22
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.53
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.02
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.92
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.44
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.27
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.13
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.58
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.08
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.86
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.79
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	90.43
d1q47a_	495	Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]	87.81
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	86.87
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	86.23
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	82.34

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.1e-44  Score=271.24  Aligned_cols=243  Identities=23%  Similarity=0.363  Sum_probs=207.2

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCC------------------
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPL------------------   64 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~------------------   64 (294)
                      .|++|+++|++++|+  |+++ +|++|+.||+|+|||+.+++.+.++.+|...|.+++|+|+                  
T Consensus        12 ~L~GH~~~I~~l~~s--p~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFH--PVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF   88 (317)
T ss_dssp             EEECCSSCEEEEEEC--SSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             EEcCCCCCeEEEEEc--CCCC-EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccc
Confidence            467899999999997  8998 9999999999999999999988888888888888887762                  


Q ss_pred             -----------------------CCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC
Q 022590           65 -----------------------KPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD  121 (294)
Q Consensus        65 -----------------------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d  121 (294)
                                             ++..+++++.|+.+++||+++++.+..+.   +|...+.+++|+| ++.+|++++.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~l~~~~~d  164 (317)
T d1vyhc1          89 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT---GHREWVRMVRPNQ-DGTLIASCSND  164 (317)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             cccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc---cCCCcceeeeccc-CCCEEEEEeCC
Confidence                                   34567888999999999999999888887   6999999999999 88999999999


Q ss_pred             CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee----------------------cceEE
Q 022590          122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL----------------------GDFIL  179 (294)
Q Consensus       122 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~l~  179 (294)
                      +.|++|+++...                       ....+..|...+.++.|.                      +..++
T Consensus       165 ~~v~~~~~~~~~-----------------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (317)
T d1vyhc1         165 QTVRVWVVATKE-----------------------CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL  221 (317)
T ss_dssp             SCEEEEETTTCC-----------------------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEE
T ss_pred             CeEEEEeeccce-----------------------eeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeE
Confidence            999999998832                       233344444444444432                      45799


Q ss_pred             EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccc
Q 022590          180 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA  259 (294)
Q Consensus       180 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  259 (294)
                      +++.|+.|++||+++++         .+..+..|...+.+++++|++  .+|++|+.||.|++||+++++..  ..+.  
T Consensus       222 ~~~~d~~i~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~--~~~~--  286 (317)
T d1vyhc1         222 SGSRDKTIKMWDVSTGM---------CLMTLVGHDNWVRGVLFHSGG--KFILSCADDKTLRVWDYKNKRCM--KTLN--  286 (317)
T ss_dssp             EEETTSEEEEEETTTTE---------EEEEEECCSSCEEEEEECSSS--SCEEEEETTTEEEEECCTTSCCC--EEEE--
T ss_pred             eccCCCEEEEEECCCCc---------EEEEEeCCCCCEEEEEECCCC--CEEEEEECCCeEEEEECCCCcEE--EEEc--
Confidence            99999999999998664         677888899999999999998  68999999999999999988743  3343  


Q ss_pred             ccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          260 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       260 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      +|..+|++++|+|++++|++|+.||.|+|||
T Consensus       287 ~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         287 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            7789999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-43  Score=273.62  Aligned_cols=244  Identities=18%  Similarity=0.262  Sum_probs=206.8

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      |++|.++|++++|+  |+++ +||+|+.||+|+|||+.+++.+..+..|..+|.+++|+| ++.++++|+.|+.+++|+.
T Consensus        51 L~GH~~~I~~l~~s--~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~-~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          51 LRGHLAKIYAMHWG--TDSR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             ECCCSSCEEEEEEC--TTSS-EEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECT-TSSEEEEEETTCCEEEEES
T ss_pred             ECCCCCCEEEEEEC--CCCC-EEEEEECCCceeeeecccceeEEEEecccccEEeeEeec-cceeeeeecccceeecccc
Confidence            56899999999998  8998 999999999999999999999999999999999999999 8899999999999999997


Q ss_pred             CCCce----EEEeec--------------------------------------cCCCCCceeEEEEecCCCceEEeeecC
Q 022590           84 QTGIC----ILIFAG--------------------------------------AGGHRNEVLSVDFHPSDIYRIASCGMD  121 (294)
Q Consensus        84 ~~~~~----~~~~~~--------------------------------------~~~~~~~v~~l~~~~~~~~~l~~~~~d  121 (294)
                      .....    ...+..                                      ...+...+....+.+ ...++++++.|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d  205 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGACD  205 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETT
T ss_pred             cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeecccc-ccceeEEeecC
Confidence            64321    111110                                      003555677777877 78889999999


Q ss_pred             CcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCC
Q 022590          122 NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP  199 (294)
Q Consensus       122 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~  199 (294)
                      +.|++||+++                       ..+...+..|...|.+++|+  +++|++++.|+.|++||++...   
T Consensus       206 ~~v~i~d~~~-----------------------~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~---  259 (340)
T d1tbga_         206 ASAKLWDVRE-----------------------GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ---  259 (340)
T ss_dssp             TEEEEEETTT-----------------------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---
T ss_pred             ceEEEEECCC-----------------------CcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc---
Confidence            9999999998                       44566778899999999997  7899999999999999998654   


Q ss_pred             CCCCceeeee--eecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEE
Q 022590          200 GEGTADILQK--YPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI  277 (294)
Q Consensus       200 ~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  277 (294)
                            ....  ...+...+..++|+|++  .+|++|+.||.|++||+.+++.  ...+.  +|..+|++++|+|++++|
T Consensus       260 ------~~~~~~~~~~~~~i~~~~~s~~~--~~l~~g~~dg~i~iwd~~~~~~--~~~~~--~H~~~V~~l~~s~d~~~l  327 (340)
T d1tbga_         260 ------ELMTYSHDNIICGITSVSFSKSG--RLLLAGYDDFNCNVWDALKADR--AGVLA--GHDNRVSCLGVTDDGMAV  327 (340)
T ss_dssp             ------EEEEECCTTCCSCEEEEEECSSS--CEEEEEETTSCEEEEETTTCCE--EEEEC--CCSSCEEEEEECTTSSCE
T ss_pred             ------cccccccccccCceEEEEECCCC--CEEEEEECCCEEEEEECCCCcE--EEEEc--CCCCCEEEEEEeCCCCEE
Confidence                  2322  33455679999999998  6999999999999999998863  44444  788999999999999999


Q ss_pred             EEeccCCcEEEEe
Q 022590          278 LSCCEDGAIWRWD  290 (294)
Q Consensus       278 ~s~~~dg~i~vw~  290 (294)
                      ++|+.||.|+|||
T Consensus       328 ~s~s~Dg~v~iWd  340 (340)
T d1tbga_         328 ATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSCEEEEC
T ss_pred             EEEccCCEEEEeC
Confidence            9999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.2e-43  Score=266.30  Aligned_cols=251  Identities=16%  Similarity=0.194  Sum_probs=201.6

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc--ceecccCcceEEEEeCCCCCceEEEeeC--CCcEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH--KSFVGHGDSINEIRTQPLKPSLVVSASK--DESVR   79 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~l~s~~~--dg~i~   79 (294)
                      +.+|.+.|++++|+  |+|+ +||+|+.||+|+|||+.+++..  ..+..|.++|.+++|+| ++++|++++.  +..++
T Consensus        54 ~~~H~~~v~~~~~s--p~g~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~  129 (311)
T d1nr0a1          54 YTEHSHQTTVAKTS--PSGY-YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGH  129 (311)
T ss_dssp             ECCCSSCEEEEEEC--TTSS-EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEE
T ss_pred             EcCCCCCEEEEEEe--CCCC-eEeccccCceEeeeeeeccccccccccccccCccccccccc-ccccccccccccccccc
Confidence            35899999999997  9998 9999999999999999887654  45788999999999999 8888888875  45699


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      +|++++++....+.   +|...|++++|+|++...|++|+.|+.|++||+++                       .....
T Consensus       130 v~~~~~~~~~~~l~---~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~-----------------------~~~~~  183 (311)
T d1nr0a1         130 VFLFDTGTSNGNLT---GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-----------------------FKFKS  183 (311)
T ss_dssp             EEETTTCCBCBCCC---CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-----------------------BEEEE
T ss_pred             cccccccccccccc---ccccccccccccccceeeecccccccccccccccc-----------------------ccccc
Confidence            99999998887776   79999999999994445688999999999999998                       44566


Q ss_pred             EeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          160 IASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      ....|...|.++.|+  ++++++++.|+.|++||++++........  .......|...|.+++|+|++  .+|++|+.|
T Consensus       184 ~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~--~~~~~~~h~~~V~~~~~s~~~--~~l~tgs~D  259 (311)
T d1nr0a1         184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED--DSLKNVAHSGSVFGLTWSPDG--TKIASASAD  259 (311)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC--TTSSSCSSSSCEEEEEECTTS--SEEEEEETT
T ss_pred             ccccccccccccccCccccccccccccccccccccccccccccccc--cccccccccccccccccCCCC--CEEEEEeCC
Confidence            778899999999996  88999999999999999987652110000  011123467789999999998  589999999


Q ss_pred             CeEEEEeccCCCceeeeecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          238 GKIFVWELQSSPPVLIARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      |.|++||+++++..  ..+. +......+.++.  +++++|++++.||.|++||.+
T Consensus       260 g~v~iwd~~t~~~~--~~l~~~~~~~~~~~~~~--~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         260 KTIKIWNVATLKVE--KTIPVGTRIEDQQLGII--WTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             SEEEEEETTTTEEE--EEEECCSSGGGCEEEEE--ECSSCEEEEETTCCEEEEETT
T ss_pred             CeEEEEECCCCcEE--EEEECCCCccceEEEEE--ecCCEEEEEECCCEEEEEeCC
Confidence            99999999988643  3333 112223344444  456689999999999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-42  Score=263.98  Aligned_cols=245  Identities=13%  Similarity=0.148  Sum_probs=205.5

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .+++....++++  |+|+ .|+.+. ++.|.+|++++++..+.+.+|.+.|++++|+| ++++|++|+.||+|++||+.+
T Consensus        15 ~~r~~~~~~a~~--~~g~-~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp-~g~~latg~~dg~i~iwd~~~   89 (311)
T d1nr0a1          15 TARGTAVVLGNT--PAGD-KIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQ   89 (311)
T ss_dssp             CCTTCCCCCEEC--TTSS-EEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSS
T ss_pred             CCCCCeEEEEEc--CCCC-EEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeC-CCCeEeccccCceEeeeeeec
Confidence            344555667776  9999 777764 66899999999999999999999999999999 899999999999999999988


Q ss_pred             CceE--EEeeccCCCCCceeEEEEecCCCceEEeeec--CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           86 GICI--LIFAGAGGHRNEVLSVDFHPSDIYRIASCGM--DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        86 ~~~~--~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      ++..  ..+.   +|..+|.+++|+| ++.+|++++.  +..+++|+++.                       ..+...+
T Consensus        90 ~~~~~~~~~~---~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~-----------------------~~~~~~l  142 (311)
T d1nr0a1          90 TTHILKTTIP---VFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDT-----------------------GTSNGNL  142 (311)
T ss_dssp             TTCCEEEEEE---CSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTT-----------------------CCBCBCC
T ss_pred             cccccccccc---cccCccccccccc-ccccccccccccccccccccccc-----------------------ccccccc
Confidence            7654  3344   6999999999999 8888888875  45699999987                       3344556


Q ss_pred             ecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          162 SVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       162 ~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ..|...|.+++|+  ++ .|++|+.|+.|++||+++.+         .......+..+|.++.++|++  .++++++.||
T Consensus       143 ~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~---------~~~~~~~~~~~i~~v~~~p~~--~~l~~~~~d~  211 (311)
T d1nr0a1         143 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK---------FKSTFGEHTKFVHSVRYNPDG--SLFASTGGDG  211 (311)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE---------EEEEECCCSSCEEEEEECTTS--SEEEEEETTS
T ss_pred             cccccccccccccccceeeecccccccccccccccccc---------cccccccccccccccccCccc--cccccccccc
Confidence            7899999999997  44 58889999999999998654         567777888999999999998  6899999999


Q ss_pred             eEEEEeccCCCceeeeecc---ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          239 KIFVWELQSSPPVLIARLS---HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|++||+.+.+........   ..+|...|++++|+|++++|++|+.||.|+|||+++
T Consensus       212 ~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             cccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            9999999987644333222   336788999999999999999999999999999874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-42  Score=272.32  Aligned_cols=272  Identities=17%  Similarity=0.297  Sum_probs=206.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec------------------ccCcceEEEEeCCCCCc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV------------------GHGDSINEIRTQPLKPS   67 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------------~h~~~v~~~~~~~~~~~   67 (294)
                      +|.+.|+|++|+  |+|+ +||+|+ |+.|+|||+.+++.+..+.                  .|...|++++|+| +++
T Consensus        60 ~H~~~V~~l~fs--~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~  134 (388)
T d1erja_          60 DHTSVVCCVKFS--NDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGK  134 (388)
T ss_dssp             ECSSCCCEEEEC--TTSS-EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSS
T ss_pred             CCCCcEEEEEEC--CCCC-EEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CCC
Confidence            699999999998  9998 999986 8999999999887765553                  4667799999999 899


Q ss_pred             eEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccc-------e
Q 022590           68 LVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKS-------F  140 (294)
Q Consensus        68 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------~  140 (294)
                      +|++|+.||+|++||...++.+..+.   +|...|.++.+++ ++..+++++.++.+++||.+.........       .
T Consensus       135 ~l~s~~~dg~v~i~~~~~~~~~~~~~---~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  210 (388)
T d1erja_         135 FLATGAEDRLIRIWDIENRKIVMILQ---GHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTV  210 (388)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEE
T ss_pred             cceecccccccccccccccccccccc---ccccccccccccc-ccccccccccceeeeeeeccccccccccccccccccc
Confidence            99999999999999999999888887   7999999999999 88889999999999999998743221110       0


Q ss_pred             eecCCCCC-------------------CCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCC
Q 022590          141 TWTDLPSK-------------------FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSP  199 (294)
Q Consensus       141 ~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~  199 (294)
                      .+......                   ...............|...|.++.|+  +++|++++.|+.|++||++......
T Consensus       211 ~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~  290 (388)
T d1erja_         211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS  290 (388)
T ss_dssp             EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred             cccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccc
Confidence            00000000                   00000111222345688899999997  7899999999999999998765432


Q ss_pred             CC---CCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEE------
Q 022590          200 GE---GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAM------  270 (294)
Q Consensus       200 ~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~------  270 (294)
                      ..   ...........+...+.+++|+|++  .+|++|+.||.|++||++++++  ...+.  +|...|.++++      
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~sg~~dg~i~vwd~~~~~~--~~~l~--~H~~~V~~~~~~~~~~~  364 (388)
T d1erja_         291 DSKTPNSGTCEVTYIGHKDFVLSVATTQND--EYILSGSKDRGVLFWDKKSGNP--LLMLQ--GHRNSVISVAVANGSSL  364 (388)
T ss_dssp             --------CEEEEEECCSSCEEEEEECGGG--CEEEEEETTSEEEEEETTTCCE--EEEEE--CCSSCEEEEEECSSCTT
T ss_pred             ccccccccceeeecccccceEEEEEECCCC--CEEEEEeCCCEEEEEECCCCcE--EEEEe--CCCCCEEEEEEecCccc
Confidence            11   1223455566778899999999998  6899999999999999999874  34444  78899999975      


Q ss_pred             ccCCCEEEEeccCCcEEEEecC
Q 022590          271 SYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       271 s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +|++++|+||+.||.|+||+++
T Consensus       365 spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         365 GPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEeee
Confidence            6789999999999999999986

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-41  Score=262.18  Aligned_cols=237  Identities=14%  Similarity=0.277  Sum_probs=206.7

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCc--cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNE--KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .|++.|.+++|+  |+|+ +|++|+.||.|++||+...  +....+..|...|.+++|+| ++.++++++.|+.|++|++
T Consensus        95 ~h~~~I~~v~~s--~dg~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~  170 (337)
T d1gxra_          95 NRDNYIRSCKLL--PDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             CTTSBEEEEEEC--TTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEET
T ss_pred             CCCCcEEEEEEc--CCCC-EEEEeeccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence            688999999997  9998 9999999999999998754  45567788999999999999 8899999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                      .+++......   +|...|.+++|++ ++..+++++.|+.+++||+++..                       .+ ....
T Consensus       171 ~~~~~~~~~~---~~~~~v~~l~~s~-~~~~~~~~~~d~~v~i~d~~~~~-----------------------~~-~~~~  222 (337)
T d1gxra_         171 HNQTLVRQFQ---GHTDGASCIDISN-DGTKLWTGGLDNTVRSWDLREGR-----------------------QL-QQHD  222 (337)
T ss_dssp             TTTEEEEEEC---CCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE-----------------------EE-EEEE
T ss_pred             cccccccccc---ccccccccccccc-cccccccccccccccccccccce-----------------------ee-cccc
Confidence            9998887777   6999999999999 88899999999999999998732                       22 2334


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      |...|.+++|+  ++++++++.|+.+++||++..+          ......|...|.+++|+|++  .+|++++.||.|+
T Consensus       223 ~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~i~~v~~s~~g--~~l~s~s~Dg~i~  290 (337)
T d1gxra_         223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD----------KYQLHLHESCVLSLKFAYCG--KWFVSTGKDNLLN  290 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC----------EEEECCCSSCEEEEEECTTS--SEEEEEETTSEEE
T ss_pred             cccceEEEEEcccccccceeccccccccccccccc----------cccccccccccceEEECCCC--CEEEEEeCCCeEE
Confidence            78889999996  7899999999999999998764          23456678889999999998  5899999999999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      +||+.+++...  ..   .|...|++++|+|++++|++|+.||.|+|||+
T Consensus       291 iwd~~~~~~~~--~~---~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         291 AWRTPYGASIF--QS---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEETTTCCEEE--EE---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEECCCCCEEE--Ec---cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999887433  22   45678999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.3e-42  Score=266.01  Aligned_cols=254  Identities=12%  Similarity=0.110  Sum_probs=205.5

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc--ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK--LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      ..++|+|++|+  |+|+ +||+|+.||.|+|||..+++  .+..+++|.++|++++|+| ++++|++|+.|++|++||+.
T Consensus         6 ~~~pIt~~~~s--~dg~-~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp-~~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           6 LVEPISCHAWN--KDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             CSSCCCEEEEC--TTSS-EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEE
T ss_pred             CCCCeEEEEEC--CCCC-EEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECC-CCCEEEEEECCCeEEEEeec
Confidence            45789999998  9998 99999999999999998765  5677889999999999999 88999999999999999998


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      ++.....+.. .+|...|.+++|+| +++.|++++.|+.+++|++......                   .........|
T Consensus        82 ~~~~~~~~~~-~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~-------------------~~~~~~~~~~  140 (371)
T d1k8kc_          82 GRTWKPTLVI-LRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDW-------------------WVCKHIKKPI  140 (371)
T ss_dssp             TTEEEEEEEC-CCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTE-------------------EEEEEECTTC
T ss_pred             cccccccccc-cccccccccccccc-ccccceeecccCcceeeeeeccccc-------------------cccccccccc
Confidence            7765444332 26889999999999 8899999999999999998863211                   1123345668


Q ss_pred             CCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCC---------CCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590          165 SNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPG---------EGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      ...|.+++|+  +.+|++++.|+.+++||.........         ......+.....+...+.+++|+|++  .+|++
T Consensus       141 ~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--~~l~s  218 (371)
T d1k8kc_         141 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG--SRVAW  218 (371)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS--SEEEE
T ss_pred             ccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccc--ccccc
Confidence            8899999997  78999999999999999876542211         11123455666788889999999998  58999


Q ss_pred             EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ++.|+.|++||+.+.+.  ...+.  .|..+|.+++|+|++++|++|+ |+.+++|...
T Consensus       219 ~~~d~~i~iwd~~~~~~--~~~~~--~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         219 VSHDSTVCLADADKKMA--VATLA--SETLPLLAVTFITESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             EETTTEEEEEEGGGTTE--EEEEE--CSSCCEEEEEEEETTEEEEEET-TSSCEEEEEE
T ss_pred             cccCCcceEEeeecccc--eeeee--cccccceeeeecCCCCEEEEEc-CCceEEEEee
Confidence            99999999999998763  33343  6778999999999998888765 7777776543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-41  Score=259.80  Aligned_cols=239  Identities=16%  Similarity=0.266  Sum_probs=202.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccc-----eecccCcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHK-----SFVGHGDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      .|.+.|.+++|+  |+|+ +|++|+ ||.|+|||+.++....     ...+|.+.|++++|+| ++++|++|+.||+|++
T Consensus        49 ~H~~~V~~v~fs--~~g~-~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~-dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          49 NHGEVVCAVTIS--NPTR-HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSI  123 (337)
T ss_dssp             CCSSCCCEEEEC--SSSS-EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEE
T ss_pred             CCCCcEEEEEEC--CCCC-EEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcC-CCCEEEEeeccccccc
Confidence            689999999997  9998 999987 8999999997654332     2346899999999999 8899999999999999


Q ss_pred             EEcCCCc--eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           81 WNVQTGI--CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        81 wd~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      ||+....  ....+.   .|...+.+++|+| ++.++++++.|+.|++|++++                       ....
T Consensus       124 wd~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~-----------------------~~~~  176 (337)
T d1gxra_         124 WDLAAPTPRIKAELT---SSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHN-----------------------QTLV  176 (337)
T ss_dssp             EECCCC--EEEEEEE---CSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTT-----------------------TEEE
T ss_pred             ccccccccccccccc---ccccccccccccc-ccccccccccccccccccccc-----------------------cccc
Confidence            9987543  444555   6899999999999 889999999999999999987                       3445


Q ss_pred             EEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          159 FIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      .....|...+.+++|+  +..+++++.|+.+++||+++++         .+..+ .+...+.+++|+|++  .++++++.
T Consensus       177 ~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~---------~~~~~-~~~~~i~~l~~~~~~--~~l~~~~~  244 (337)
T d1gxra_         177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR---------QLQQH-DFTSQIFSLGYCPTG--EWLAVGME  244 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------EEEEE-ECSSCEEEEEECTTS--SEEEEEET
T ss_pred             ccccccccccccccccccccccccccccccccccccccce---------eeccc-ccccceEEEEEcccc--cccceecc
Confidence            5677789999999996  7899999999999999998764         34433 356789999999998  68999999


Q ss_pred             CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          237 EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       237 dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ||.+++||+++.+..   ..  ..|...|++++|+|++++|++++.||.|++||+.+
T Consensus       245 d~~i~i~d~~~~~~~---~~--~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~  296 (337)
T d1gxra_         245 SSNVEVLHVNKPDKY---QL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY  296 (337)
T ss_dssp             TSCEEEEETTSSCEE---EE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             ccccccccccccccc---cc--cccccccceEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            999999999987632   22  26778999999999999999999999999999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.7e-41  Score=255.95  Aligned_cols=252  Identities=16%  Similarity=0.215  Sum_probs=188.8

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      .+.+|.++|++++|+  |+|+ +|++|+.||+|++||+.+++..+.+. .|...|++++|+| ++. +++++.|+.+++|
T Consensus         7 ~~~GH~~~V~~l~~s--~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~-~g~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           7 VRYGHNKAITALSSS--ADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS-KGD-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EECCCSSCEEEEEEC--TTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT-TSC-EEEEETTTEEEEE
T ss_pred             EcCCCCCCcEEEEEC--CCCC-EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec-cce-eecccceeeEEEe
Confidence            356999999999997  9998 99999999999999999999888774 6899999999999 665 5667789999999


Q ss_pred             EcCCCceEE---Eeec----------------------------------cCCCCCceeEEEEecCCCceEEeeecCCcE
Q 022590           82 NVQTGICIL---IFAG----------------------------------AGGHRNEVLSVDFHPSDIYRIASCGMDNTV  124 (294)
Q Consensus        82 d~~~~~~~~---~~~~----------------------------------~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i  124 (294)
                      +........   ....                                  .......+.+++|+| ++.+|++|+.||.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN-DKQFVAVGGQDSKV  160 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT-TSCEEEEEETTSEE
T ss_pred             ccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence            975432100   0000                                  001223456666666 66667777777777


Q ss_pred             EEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCC
Q 022590          125 KIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEG  202 (294)
Q Consensus       125 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~  202 (294)
                      ++||+++.                      .........|...|.+++|+  ++++++++.|+.|++||+.++..     
T Consensus       161 ~~~d~~~~----------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----  213 (299)
T d1nr0a2         161 HVYKLSGA----------------------SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-----  213 (299)
T ss_dssp             EEEEEETT----------------------EEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE-----
T ss_pred             cccccccc----------------------ccccccccccccccccccccccccccccccccccccccccccccc-----
Confidence            77776652                      11123445688999999997  78999999999999999987642     


Q ss_pred             CceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEecc
Q 022590          203 TADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       203 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                       ......+..|...|.+++|+|++  .+|++|+.||.|++||+++.+........ ..+...+.++.| +++++|++|+.
T Consensus       214 -~~~~~~~~~h~~~v~~l~~s~~~--~~l~sgs~dg~i~iwd~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~~l~s~s~  288 (299)
T d1nr0a2         214 -LAHTNSWTFHTAKVACVSWSPDN--VRLATGSLDNSVIVWNMNKPSDHPIIIKG-AHAMSSVNSVIW-LNETTIVSAGQ  288 (299)
T ss_dssp             -ESCCCCCCCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTCTTSCCEEETT-SSTTSCEEEEEE-EETTEEEEEET
T ss_pred             -ccccccccccccccccccccccc--cceEEEcCCCEEEEEECCCCCcceEEEec-CCCCCcEEEEEE-CCCCEEEEEeC
Confidence             12334456678899999999998  69999999999999999887644333322 234456776655 56789999999


Q ss_pred             CCcEEEEecC
Q 022590          283 DGAIWRWDAI  292 (294)
Q Consensus       283 dg~i~vw~~~  292 (294)
                      ||.|++||+.
T Consensus       289 D~~i~iWdl~  298 (299)
T d1nr0a2         289 DSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEECC
T ss_pred             CCEEEEEecc
Confidence            9999999984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-39  Score=248.50  Aligned_cols=249  Identities=18%  Similarity=0.319  Sum_probs=184.5

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWN   82 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd   82 (294)
                      .|++|++.|.+ +++  ++|+ +||+|+.||+|+|||+.++++++++.+|...|.+++|+|   .+|++|+.|+++++|+
T Consensus        11 ~l~GH~~~V~s-~~~--~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~---~~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQ--FCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWN   83 (342)
T ss_dssp             EEECSTTSCEE-EEE--EETT-EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEE
T ss_pred             EECCcCCceEE-EEE--ECCC-EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC---Cccccceecccccccc
Confidence            46799999865 455  4587 999999999999999999999999999999999999987   4899999999999998


Q ss_pred             cCCCceEEEeecc-------------------------------------------------------------------
Q 022590           83 VQTGICILIFAGA-------------------------------------------------------------------   95 (294)
Q Consensus        83 ~~~~~~~~~~~~~-------------------------------------------------------------------   95 (294)
                      .............                                                                   
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence            7654332221100                                                                   


Q ss_pred             ----------CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCC
Q 022590           96 ----------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHS  165 (294)
Q Consensus        96 ----------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (294)
                                .+|...+..  +.+ ++.++++++.||.|++||++.                       ...+.....|.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~--~~~-~~~~l~s~~~dg~i~~~d~~~-----------------------~~~~~~~~~~~  217 (342)
T d2ovrb2         164 PETETCLHTLQGHTNRVYS--LQF-DGIHVVSGSLDTSIRVWDVET-----------------------GNCIHTLTGHQ  217 (342)
T ss_dssp             GGGTEEEEEECCCSSCEEE--EEE-CSSEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCC
T ss_pred             cccceeeEEEcCccccccc--ccC-CCCEEEEEeCCCeEEEeeccc-----------------------ceeeeEecccc
Confidence                      012222222  222 344566666666666666655                       34566778899


Q ss_pred             CceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          166 NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       166 ~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      ..+.++.+++++|++++.|+.|++||+...+.      ...+.....+...+.++.++  +  .++++|+.||.|++||+
T Consensus       218 ~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~~--~--~~~~s~s~Dg~i~iwd~  287 (342)
T d2ovrb2         218 SLTSGMELKDNILVSGNADSTVKIWDIKTGQC------LQTLQGPNKHQSAVTCLQFN--K--NFVITSSDDGTVKLWDL  287 (342)
T ss_dssp             SCEEEEEEETTEEEEEETTSCEEEEETTTCCE------EEEECSTTSCSSCEEEEEEC--S--SEEEEEETTSEEEEEET
T ss_pred             cceeEEecCCCEEEEEcCCCEEEEEecccccc------cccccccceeeeceeecccC--C--CeeEEEcCCCEEEEEEC
Confidence            99999999999999999999999999987652      11222222344455555554  4  47999999999999999


Q ss_pred             cCCCceeeeec-cccccCCCeEEEEEccCCCEEEEeccCCc----EEEEecCCC
Q 022590          246 QSSPPVLIARL-SHAQSKSPIRQTAMSYDGSTILSCCEDGA----IWRWDAIPT  294 (294)
Q Consensus       246 ~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~----i~vw~~~~~  294 (294)
                      ++++.+..... ...+|...|++++|+|++.+|++|+.||+    |++||+..+
T Consensus       288 ~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            99875443332 23467788999999999999999999985    999999754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.7e-39  Score=249.44  Aligned_cols=267  Identities=16%  Similarity=0.133  Sum_probs=203.7

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccc--cceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKL--HKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      ++.|+++|++++|+  |+++ +|++|+.|++|+|||+.++..  ...+.+|...|++++|+| +++.|++|+.|++|++|
T Consensus        47 l~gH~~~V~~l~fs--p~~~-~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~  122 (371)
T d1k8kc_          47 LKEHNGQVTGVDWA--PDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISIC  122 (371)
T ss_dssp             EECCSSCEEEEEEE--TTTT-EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEE
T ss_pred             ecCCCCCEEEEEEC--CCCC-EEEEEECCCeEEEEeeccccccccccccccccccccccccc-ccccceeecccCcceee
Confidence            56899999999998  8998 999999999999999987654  345567899999999999 88999999999999999


Q ss_pred             EcCCCceEEEe-eccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           82 NVQTGICILIF-AGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        82 d~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ++......... ....+|...|.+++|+| ++.+|++|+.|+.+++||...............     ............
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  196 (371)
T d1k8kc_         123 YFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW-----GSKMPFGELMFE  196 (371)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTT-----BSCCCTTCEEEE
T ss_pred             eeecccccccccccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccc-----cccccceeeeee
Confidence            98776543322 22336899999999999 889999999999999999876332111110000     001111234556


Q ss_pred             eecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          161 ASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ...|...|.+++|+  +++|++++.|+.|++||++.+.         .+..+..+..++.+++|+|++  .++++|. |+
T Consensus       197 ~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~---------~~~~~~~~~~~v~s~~fs~d~--~~la~g~-d~  264 (371)
T d1k8kc_         197 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM---------AVATLASETLPLLAVTFITES--SLVAAGH-DC  264 (371)
T ss_dssp             CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT---------EEEEEECSSCCEEEEEEEETT--EEEEEET-TS
T ss_pred             ccCccCcEEEEEeecccccccccccCCcceEEeeeccc---------ceeeeecccccceeeeecCCC--CEEEEEc-CC
Confidence            67899999999997  7899999999999999998654         577788888999999999998  4666554 77


Q ss_pred             eEEEEeccCCCceeeee-------------------------------------ccccccCCCeEEEEEccCC----CEE
Q 022590          239 KIFVWELQSSPPVLIAR-------------------------------------LSHAQSKSPIRQTAMSYDG----STI  277 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~-------------------------------------~~~~~~~~~v~~~~~s~~~----~~l  277 (294)
                      .+++|............                                     .....|.+.|+++++.|.+    ..|
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~  344 (371)
T d1k8kc_         265 FPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQF  344 (371)
T ss_dssp             SCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEE
T ss_pred             ceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEE
Confidence            77777654432111100                                     0011377899999998754    358


Q ss_pred             EEeccCCcEEEEecC
Q 022590          278 LSCCEDGAIWRWDAI  292 (294)
Q Consensus       278 ~s~~~dg~i~vw~~~  292 (294)
                      +|++.||.|++||++
T Consensus       345 ~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         345 CTTGMDGGMSIWDVR  359 (371)
T ss_dssp             EEEETTSEEEEEEHH
T ss_pred             EEEcCCCeEEEEeCC
Confidence            999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-39  Score=245.13  Aligned_cols=246  Identities=17%  Similarity=0.184  Sum_probs=191.6

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce--------ecccCcceEEEEeCCCCCceEEEee--CCCc
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS--------FVGHGDSINEIRTQPLKPSLVVSAS--KDES   77 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~   77 (294)
                      ...|++++|++..+|+ +|++|+.||+|+|||+..++....        +..|.++|.+++|++ ++.+|++++  .++.
T Consensus        63 ~~~v~~v~fsP~~~g~-~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~  140 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNF  140 (325)
T ss_dssp             TSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCS
T ss_pred             CCCEEEEEEeeCCCCC-EEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccce
Confidence            5789999999666787 999999999999999977654433        345788999999999 778777665  4778


Q ss_pred             EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeec
Q 022590           78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFP  157 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (294)
                      +++|+.++++.+..+.   +|...|.+++|+|.+..++++++.|+.+++||......                    ...
T Consensus       141 ~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~--------------------~~~  197 (325)
T d1pgua1         141 GVFISWDSGNSLGEVS---GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF--------------------SAS  197 (325)
T ss_dssp             EEEEETTTCCEEEECC---SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE--------------------EEE
T ss_pred             EEEEeecccccceeee---ecccccccccccccccceEEEeeccccccccccccccc--------------------cee
Confidence            9999999999888887   79999999999995556688899999999999876321                    122


Q ss_pred             eEEeecCCCceeeccee---cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc---ccCCcceE
Q 022590          158 VFIASVHSNYVDCNRWL---GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS---CDFHYNAA  231 (294)
Q Consensus       158 ~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~l  231 (294)
                      ......|...|.+++|+   +.++++++.|+.|++||+++++         .+..+..|..++..+.|+   |++  .+|
T Consensus       198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~---------~~~~l~~~~~~v~~~~~s~~~~dg--~~l  266 (325)
T d1pgua1         198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE---------FLKYIEDDQEPVQGGIFALSWLDS--QKF  266 (325)
T ss_dssp             ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC---------EEEECCBTTBCCCSCEEEEEESSS--SEE
T ss_pred             cccccCCCCccEEeeeccccceeccccccccceeeeeecccc---------ccccccccccccccceeeeeccCC--CEE
Confidence            22345678889999996   5789999999999999998765         566666666666555555   455  589


Q ss_pred             EEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC-CCEEEEeccCCcEEEEec
Q 022590          232 AIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-GSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       232 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~dg~i~vw~~  291 (294)
                      ++++.|+.|++||+++++.+......  .+...+..+++.+. +.+|++++.||.|++||+
T Consensus       267 ~s~s~D~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         267 ATVGADATIRVWDVTTSKCVQKWTLD--KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECC--TTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEEec--CCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            99999999999999988744433333  33334444444433 348899999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.2e-37  Score=236.23  Aligned_cols=265  Identities=19%  Similarity=0.315  Sum_probs=202.7

Q ss_pred             cccccCcee-EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            3 YVDQKEESF-YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         3 ~~~~h~~~v-~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      .|++|.+.| +|++|    +++ +||+|+.||+|+|||+.+++.+.++.+|.++|++++|+| + .+|++|+.|++|++|
T Consensus         7 tL~GH~~~vitc~~~----~~~-~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-~-~~l~s~s~D~~i~iw   79 (355)
T d1nexb2           7 TLRGHMTSVITCLQF----EDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-G-GILVSGSTDRTVRVW   79 (355)
T ss_dssp             EEECCSSSCEEEEEE----ETT-EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET-T-TEEEEEETTCCEEEE
T ss_pred             EECCcCCCcEEEEEE----CCC-EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC-C-CEEEEEecccccccc
Confidence            477898886 55544    466 999999999999999999999999999999999999998 5 589999999999999


Q ss_pred             EcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           82 NVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      ++...+........ .+........+.+ ++.++++++.|+.|++||++...............................
T Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          80 DIKKGCCTHVFEGH-NSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             ETTTTEEEEEECCC-SSCEEEEEEEEET-TEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccccccc-ccccccccccccc-ccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            99988877665531 2334455666777 888999999999999999987433222111100000000011112234455


Q ss_pred             ecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          162 SVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       162 ~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      ..|...+.....++++++++..|+.|++||+++++         .+.....+...+..+.++|++  .++++++.|+.|+
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~  226 (355)
T d1nexb2         158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK---------CLYILSGHTDRIYSTIYDHER--KRCISASMDTTIR  226 (355)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE---------EEEEECCCSSCEEEEEEETTT--TEEEEEETTSCEE
T ss_pred             eeccccccccccccceeeeecccceeeeeeccccc---------ceeeeeccccccccccccccc--eeeecccccceEE
Confidence            66777788888889999999999999999998654         566667777889999999998  5899999999999


Q ss_pred             EEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          242 VWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       242 i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +||++++..  ...+.  +|..+|.++++++  ++|++|+.||.|++||+++
T Consensus       227 i~d~~~~~~--~~~~~--~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~  272 (355)
T d1nexb2         227 IWDLENGEL--MYTLQ--GHTALVGLLRLSD--KFLVSAAADGSIRGWDAND  272 (355)
T ss_dssp             EEETTTCCE--EEEEC--CCSSCCCEEEECS--SEEEEECTTSEEEEEETTT
T ss_pred             eeecccccc--ccccc--ccccccccccccc--ceeeeeecccccccccccc
Confidence            999998863  33343  7888999999875  6999999999999999874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-36  Score=229.11  Aligned_cols=255  Identities=19%  Similarity=0.308  Sum_probs=177.9

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      .+|...|+|++    ++|+ +||+|+.||+|+|||+.++++++++++|.++|++++|+   +++|++|+.|+.|++|++.
T Consensus        12 ~~~~~~V~c~~----~d~~-~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          12 SETSKGVYCLQ----YDDQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             CSSCCCEEEEE----CCSS-EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESS
T ss_pred             CCCCCCEEEEE----EcCC-EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeecccccccccccccc
Confidence            47778898865    4687 99999999999999999999999999999999999884   4799999999999999998


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCC---------C-----CC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPS---------K-----FP  150 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~---------~-----~~  150 (294)
                      .+........   +...  ...+.+ ....++++..++.+.+|+...................         .     ..
T Consensus        84 ~~~~~~~~~~---~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d  157 (293)
T d1p22a2          84 TGEMLNTLIH---HCEA--VLHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD  157 (293)
T ss_dssp             SCCEEEEECC---CCSC--EEEEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred             cccccccccc---cccc--cccccc-cccceeecccccceeEeeccccccccccccccccccccccceecccccccccCC
Confidence            8766555431   1111  112222 3334555555555555555432211100000000000         0     00


Q ss_pred             ------CceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590          151 ------TKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  224 (294)
Q Consensus       151 ------~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (294)
                            .......+..+.++...+..+.+++..+++++.|+.|++||+++..         .+.....+...+..  +++
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~v~~--~~~  226 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA---------CLRVLEGHEELVRC--IRF  226 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCC---------EEEEECCCSSCEEE--EEC
T ss_pred             CceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccce---------eeeeecccceeeee--ccc
Confidence                  0000334566778888899999999999999999999999998665         55666666666654  455


Q ss_pred             cCCcceEEEEcCCCeEEEEeccCCCc-------eeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          225 DFHYNAAAIGNREGKIFVWELQSSPP-------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       225 ~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      ++  .+|++|+.||.|++||+.....       .....+.  +|..+|++++|+  +++|+||+.||+|++||
T Consensus       227 ~~--~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         227 DN--KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV--EHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             CS--SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--CCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             cc--eEEEEEcCCCEEEEEECCCCccccccCCceeeEEec--CCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            55  5899999999999999865321       1223333  788999999984  56899999999999998

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.7e-36  Score=230.26  Aligned_cols=259  Identities=8%  Similarity=0.010  Sum_probs=188.4

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce---ecccCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS---FVGHGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      .++.|++.|++|+|+  |+++ +||+|+.||+|+|||+.++.....   ..+|.++|++++|+|+++.+|++|+.||+|+
T Consensus         6 ~~~~h~d~I~~l~fs--p~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           6 IEQAPKDYISDIKII--PSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             CSSCCSSCEEEEEEE--GGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             cCCCCCCCEEEEEEe--CCCC-EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            356999999999998  8898 999999999999999977654333   3369999999999996677999999999999


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      +|++..+........  .+........+.+ +...+++++.|+.+++||++........                   ..
T Consensus        83 ~w~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~-------------------~~  140 (342)
T d1yfqa_          83 KVDLIGSPSFQALTN--NEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIA-------------------VK  140 (342)
T ss_dssp             EECSSSSSSEEECBS--CCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEE-------------------EE
T ss_pred             eeecccccccccccc--ccccccccccccc-ccccccccccccccceeeccccccceee-------------------ec
Confidence            999998887776653  2333344455555 7888999999999999999874321111                   11


Q ss_pred             EeecCC----CceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEc
Q 022590          160 IASVHS----NYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGN  235 (294)
Q Consensus       160 ~~~~~~----~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~  235 (294)
                      ....+.    .....+...++.+++++.|+.|++||++.....      .................+.+... ..+++++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s  213 (342)
T d1yfqa_         141 NLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD------NGTIEESGLKYQIRDVALLPKEQ-EGYACSS  213 (342)
T ss_dssp             ESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTC------CCEEEECSCSSCEEEEEECSGGG-CEEEEEE
T ss_pred             ccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCccc------ceeeeecccccceeeeEeecCCC-CEEEeec
Confidence            111111    112223334889999999999999999876532      12222333344455555555443 6899999


Q ss_pred             CCCeEEEEeccCCCceee-----------eeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          236 REGKIFVWELQSSPPVLI-----------ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       236 ~dg~i~i~d~~~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .||.+.+|+.........           .......|...|++++|+|++++||+|+.||.|++||+++
T Consensus       214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~  282 (342)
T d1yfqa_         214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT  282 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred             CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCC
Confidence            999999999865432111           0111345667899999999999999999999999999875

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.8e-35  Score=225.45  Aligned_cols=232  Identities=21%  Similarity=0.240  Sum_probs=181.5

Q ss_pred             cccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc
Q 022590           44 KLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT  123 (294)
Q Consensus        44 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~  123 (294)
                      +..+++++|.++|++|+|+| ++++|++|+.||+|+|||+.+++.+..+.   .|..+|.+++|+| ++.++++|+.|+.
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~-~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~---~~~~~v~~v~~~~-~~~~l~~~~~d~~  120 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNKVHAIP---LRSSWVMTCAYAP-SGNYVACGGLDNI  120 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEEE---CSCSCEEEEEECT-TSSEEEEEETTCC
T ss_pred             eeeEEECCCCCCEEEEEECC-CCCEEEEEECCCceeeeecccceeEEEEe---cccccEEeeEeec-cceeeeeecccce
Confidence            45677899999999999999 88999999999999999999999999888   6999999999999 8899999999999


Q ss_pred             EEEEeccccccccccceeecCCCCCCCCc----------------------eeeeceEEeecCCCceeeccee--cceEE
Q 022590          124 VKIWSMKEFWTYVEKSFTWTDLPSKFPTK----------------------YVQFPVFIASVHSNYVDCNRWL--GDFIL  179 (294)
Q Consensus       124 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~i~~~~~~--~~~l~  179 (294)
                      +++|+........................                      ...........+...+....+.  +.+++
T Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             eecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence            99999876433222211111111000000                      0001122233344455555554  67899


Q ss_pred             EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccc
Q 022590          180 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA  259 (294)
Q Consensus       180 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  259 (294)
                      +++.|+.|++||+++++         .+..+..|...|++++|+|++  .+|++|+.||.|++||++..+....  ....
T Consensus       201 ~~~~d~~v~i~d~~~~~---------~~~~~~~h~~~i~~v~~~p~~--~~l~s~s~d~~i~~~~~~~~~~~~~--~~~~  267 (340)
T d1tbga_         201 SGACDASAKLWDVREGM---------CRQTFTGHESDINAICFFPNG--NAFATGSDDATCRLFDLRADQELMT--YSHD  267 (340)
T ss_dssp             EEETTTEEEEEETTTTE---------EEEEECCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEEEE--ECCT
T ss_pred             EeecCceEEEEECCCCc---------EEEEEeCCCCCeEEEEECCCC--CEEEEEeCCCeEEEEeecccccccc--cccc
Confidence            99999999999998654         677788899999999999998  6899999999999999998764333  3333


Q ss_pred             ccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          260 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       260 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+..+|.+++|+|++++|++|+.||.|++||+.+
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~  301 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK  301 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT
T ss_pred             cccCceEEEEECCCCCEEEEEECCCEEEEEECCC
Confidence            6677899999999999999999999999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-35  Score=224.18  Aligned_cols=247  Identities=13%  Similarity=0.128  Sum_probs=183.6

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCC-eEEEEEcCCc--cccceeccc-CcceEEEEeCCC-CCceEEEeeCCCcEEEEEc
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGING-IIRVIDVSNE--KLHKSFVGH-GDSINEIRTQPL-KPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~--~~~~~~~~h-~~~v~~~~~~~~-~~~~l~s~~~dg~i~vwd~   83 (294)
                      ..+++++|+  |+|+ .|+.++.+. .|+.|+....  .....+.+| ...|++++|+|. ++.+|++|+.||+|++||+
T Consensus        18 ~~~t~l~~~--~~~~-~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~   94 (325)
T d1pgua1          18 NFTTHLSYD--PTTN-AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW   94 (325)
T ss_dssp             TCCCCCEEE--TTTT-EEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred             CCeEEEEEC--CCCC-EEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeee
Confidence            345677776  9998 777776553 3566665443  335566777 468999999984 5679999999999999999


Q ss_pred             CCCceEEEee-----ccCCCCCceeEEEEecCCCceEEeee--cCCcEEEEeccccccccccceeecCCCCCCCCceeee
Q 022590           84 QTGICILIFA-----GAGGHRNEVLSVDFHPSDIYRIASCG--MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQF  156 (294)
Q Consensus        84 ~~~~~~~~~~-----~~~~~~~~v~~l~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (294)
                      ..++....+.     ....|.++|.+++|+| ++.++++++  .++.+++|+..+                       ..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~-----------------------~~  150 (325)
T d1pgua1          95 TFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDS-----------------------GN  150 (325)
T ss_dssp             EEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTT-----------------------CC
T ss_pred             cCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecc-----------------------cc
Confidence            7654322211     1125889999999999 777777665  467899999987                       34


Q ss_pred             ceEEeecCCCceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE
Q 022590          157 PVFIASVHSNYVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI  233 (294)
Q Consensus       157 ~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~  233 (294)
                      .+..+..|...|.++.|+  ++ .+++++.|+.+++||....+.      .........+...|.+++|+|+.. .++++
T Consensus       151 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~------~~~~~~~~~~~~~v~~v~~~pd~~-~~l~s  223 (325)
T d1pgua1         151 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF------SASDRTHHKQGSFVRDVEFSPDSG-EFVIT  223 (325)
T ss_dssp             EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE------EEEECSSSCTTCCEEEEEECSTTC-CEEEE
T ss_pred             cceeeeecccccccccccccccceEEEeeccccccccccccccc------ceecccccCCCCccEEeeeccccc-eeccc
Confidence            566778899999999997  33 578899999999999876541      112233345667899999999754 68999


Q ss_pred             EcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEc---cCCCEEEEeccCCcEEEEecCC
Q 022590          234 GNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS---YDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       234 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ++.||.|++||+++++.  ...+.  .|..++..+.|+   |+|++|++++.|+.|+|||+++
T Consensus       224 ~~~d~~i~iwd~~~~~~--~~~l~--~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         224 VGSDRKISCFDGKSGEF--LKYIE--DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             EETTCCEEEEETTTCCE--EEECC--BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             cccccceeeeeeccccc--ccccc--ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence            99999999999998874  33343  444555555554   6889999999999999999875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.5e-35  Score=219.70  Aligned_cols=235  Identities=13%  Similarity=0.139  Sum_probs=172.6

Q ss_pred             ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC
Q 022590           43 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN  122 (294)
Q Consensus        43 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg  122 (294)
                      |+..+.++||.++|++++|+| ++++|++|+.||+|++||+++++.+..+..  +|...|++++|+| ++. +++++.|+
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~-dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~--~h~~~v~~v~~~~-~g~-~~~~~~d~   76 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPD--VHATMITGIKTTS-KGD-LFTVSWDD   76 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSC--SCSSCEEEEEECT-TSC-EEEEETTT
T ss_pred             CccceEcCCCCCCcEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcC--CCCCcEEEEEeec-cce-eeccccee
Confidence            456788999999999999999 899999999999999999999998877653  6899999999999 766 56677899


Q ss_pred             cEEEEeccccccccccce-----------eecCCCCCCCC---c---eeeeceEEeecCCCceeeccee--cceEEEeeC
Q 022590          123 TVKIWSMKEFWTYVEKSF-----------TWTDLPSKFPT---K---YVQFPVFIASVHSNYVDCNRWL--GDFILSKSV  183 (294)
Q Consensus       123 ~i~~wd~~~~~~~~~~~~-----------~~~~~~~~~~~---~---~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~  183 (294)
                      .+++|+............           .+.........   .   ...............+.+++|+  ++++++++.
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~  156 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQ  156 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEET
T ss_pred             eEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999875322111111           01000000000   0   0000001111233445666775  789999999


Q ss_pred             CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCC
Q 022590          184 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS  263 (294)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  263 (294)
                      |+.|++||+++.+.        .......|...|.+++|+|++  .++++++.++.|++||+.+..... .......|..
T Consensus       157 dg~i~~~d~~~~~~--------~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~~~~~~~~~~-~~~~~~~h~~  225 (299)
T d1nr0a2         157 DSKVHVYKLSGASV--------SEVKTIVHPAEITSVAFSNNG--AFLVATDQSRKVIPYSVANNFELA-HTNSWTFHTA  225 (299)
T ss_dssp             TSEEEEEEEETTEE--------EEEEEEECSSCEEEEEECTTS--SEEEEEETTSCEEEEEGGGTTEES-CCCCCCCCSS
T ss_pred             cccccccccccccc--------ccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccc
Confidence            99999999976531        122334567889999999998  589999999999999998765322 1222347888


Q ss_pred             CeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          264 PIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       264 ~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +|++++|+|++++|++|+.||.|++||+++
T Consensus       226 ~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~  255 (299)
T d1nr0a2         226 KVACVSWSPDNVRLATGSLDNSVIVWNMNK  255 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTC
T ss_pred             ccccccccccccceEEEcCCCEEEEEECCC
Confidence            999999999999999999999999999874

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-35  Score=228.38  Aligned_cols=275  Identities=15%  Similarity=0.127  Sum_probs=185.5

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc------ceecccCcce------EEEEeCCCCCceEEE
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH------KSFVGHGDSI------NEIRTQPLKPSLVVS   71 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~h~~~v------~~~~~~~~~~~~l~s   71 (294)
                      .+.|++.|++++++    ++ ++++++.|++|+|||..+.+..      .....|...+      ..+.....+..++++
T Consensus        10 ~~~H~~~I~~v~~~----~~-~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_          10 GKAHDADIFSVSAC----NS-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             SSCSSSCEEEEEEC----SS-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             CCcccCccEEEEEe----CC-EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            35899999999974    34 8999999999999998665321      1112233332      233333323457889


Q ss_pred             eeCCCcEEEEEcCCCceEEEe-----ec--cCCCCCceeEEEEecCC----CceEEeeecCCcEEEEeccccccccccce
Q 022590           72 ASKDESVRLWNVQTGICILIF-----AG--AGGHRNEVLSVDFHPSD----IYRIASCGMDNTVKIWSMKEFWTYVEKSF  140 (294)
Q Consensus        72 ~~~dg~i~vwd~~~~~~~~~~-----~~--~~~~~~~v~~l~~~~~~----~~~l~~~~~dg~i~~wd~~~~~~~~~~~~  140 (294)
                      ++.||.|++|++........+     ..  ...+...+..++|.+..    +.++++++.||.+++|++.......... 
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~-  163 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-  163 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT-
T ss_pred             EeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee-
Confidence            999999999998654321111     11  11244567788887732    4688999999999999987532111100 


Q ss_pred             eecCCCCCCCCceeeeceEEeecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeE
Q 022590          141 TWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWF  219 (294)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~  219 (294)
                          ...................+...+.+++|+ ..+|++|+.|+.|++||+++++...   .......+..|..+|.+
T Consensus       164 ----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~---~~~~~~~l~~h~~~V~~  236 (393)
T d1sq9a_         164 ----TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLY---NFESQHSMINNSNSIRS  236 (393)
T ss_dssp             ----TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEE---EEECCC---CCCCCEEE
T ss_pred             ----eeeeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeeccccccc---ccccccccccccceEEE
Confidence                000000111122223334556678889997 4489999999999999998765211   11122334567889999


Q ss_pred             EEEcccCCcceEEEEcCCC---eEEEEeccCCCceeeeec---------cccccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590          220 IKFSCDFHYNAAAIGNREG---KIFVWELQSSPPVLIARL---------SHAQSKSPIRQTAMSYDGSTILSCCEDGAIW  287 (294)
Q Consensus       220 ~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~---------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  287 (294)
                      ++|+|++  .+|++|+.|+   .|++||+++++.......         ...+|...|++++|+|++++|+||+.|++|+
T Consensus       237 l~~spdg--~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~  314 (393)
T d1sq9a_         237 VKFSPQG--SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR  314 (393)
T ss_dssp             EEECSST--TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             ccccccc--ceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEE
Confidence            9999999  6899999886   599999998864433221         1236889999999999999999999999999


Q ss_pred             EEecCC
Q 022590          288 RWDAIP  293 (294)
Q Consensus       288 vw~~~~  293 (294)
                      +||+++
T Consensus       315 vWd~~~  320 (393)
T d1sq9a_         315 FWDVKT  320 (393)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            999875

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-34  Score=217.21  Aligned_cols=239  Identities=15%  Similarity=0.200  Sum_probs=174.5

Q ss_pred             CcccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            2 CYVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         2 ~~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      ..|++|.++|++++|+  |     |++|+.||+|++||+.++.     .+|...|.++++++ + ..+++++.|+++++|
T Consensus         7 ~~l~gH~~~I~~l~~s--~-----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~-~-~~~~s~s~D~~v~~w   72 (287)
T d1pgua2           7 KTISGHNKGITALTVN--P-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSK-A-QEYSSISWDDTLKVN   72 (287)
T ss_dssp             EEECCCSSCEEEEETT--T-----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCS-T-TCCEEEETTTEEEET
T ss_pred             EEECCCCCceEEEEEC--c-----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecC-C-CeEEEEeeccccccc
Confidence            3578999999999995  3     9999999999999987643     57999999999987 4 467999999999999


Q ss_pred             EcCCCce---E--------------------EEeeccC-------CCCCceeEEEEecCCCceEEeeecC-CcEEEEecc
Q 022590           82 NVQTGIC---I--------------------LIFAGAG-------GHRNEVLSVDFHPSDIYRIASCGMD-NTVKIWSMK  130 (294)
Q Consensus        82 d~~~~~~---~--------------------~~~~~~~-------~~~~~v~~l~~~~~~~~~l~~~~~d-g~i~~wd~~  130 (294)
                      ++...+.   .                    ..+....       .+..  ...+++| ++..+++++.+ +.+++|++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~v~~~~~~~v~~~~~~  149 (287)
T d1pgua2          73 GITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS--PGSAVSL-SQNYVAVGLEEGNTIQVFKLS  149 (287)
T ss_dssp             TEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS--CEEEEEE-CSSEEEEEETTTSCEEEEETT
T ss_pred             cccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc--eeeeeec-cCcceeeeccccceeeeeecc
Confidence            8753210   0                    0000000       0111  2234455 44455555554 467888876


Q ss_pred             ccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeee
Q 022590          131 EFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQ  208 (294)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  208 (294)
                      ..                      .........|...+.+++|+  +.+|++++.||.|++||+.+++.        ...
T Consensus       150 ~~----------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~--------~~~  199 (287)
T d1pgua2         150 DL----------------------EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV--------KTS  199 (287)
T ss_dssp             EE----------------------EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------EEC
T ss_pred             cc----------------------ceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccc--------ccc
Confidence            52                      11122234577889999997  78999999999999999987642        233


Q ss_pred             eeecCCCCeeEEEEcccCC--------cceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEe
Q 022590          209 KYPVPECDIWFIKFSCDFH--------YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSC  280 (294)
Q Consensus       209 ~~~~~~~~i~~~~~~~~~~--------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  280 (294)
                      .+..|...+.+++|+|.+.        ..++++|+.|+.|++||+++... ....+.  +|...|++++|+|++ .|+++
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~-~~~~~~--~h~~~V~~v~~~~~~-~l~s~  275 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK-IIKALN--AHKDGVNNLLWETPS-TLVSS  275 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC-CEEETT--SSTTCEEEEEEEETT-EEEEE
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe-EEEEeC--CCCCCeEEEEECCCC-EEEEE
Confidence            4567788899999998642        36899999999999999987542 233333  788999999999986 58899


Q ss_pred             ccCCcEEEEec
Q 022590          281 CEDGAIWRWDA  291 (294)
Q Consensus       281 ~~dg~i~vw~~  291 (294)
                      +.||.|++|++
T Consensus       276 g~D~~v~iW~i  286 (287)
T d1pgua2         276 GADACIKRWNV  286 (287)
T ss_dssp             ETTSCEEEEEE
T ss_pred             ECCCeEEEEEE
Confidence            99999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-34  Score=224.48  Aligned_cols=251  Identities=14%  Similarity=0.219  Sum_probs=189.9

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc----ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH----KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLW   81 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vw   81 (294)
                      .|..++........++..+..+.+..++.+.+|+....+..    ....+|.+.|++|+|+| ++++|++|+ |++|++|
T Consensus        11 ~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~-dg~~lasg~-d~~i~iW   88 (388)
T d1erja_          11 NHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVY   88 (388)
T ss_dssp             CTTCCCCHHHHCCCSSSSCTTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEE
T ss_pred             hhcCCCCCceEccCcccCccccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECC-CCCEEEEEe-CCeEEEE
Confidence            34444443222222333334667888899999997654322    22336999999999999 889999986 8999999


Q ss_pred             EcCCCceEEEeecc---------------CCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCC
Q 022590           82 NVQTGICILIFAGA---------------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLP  146 (294)
Q Consensus        82 d~~~~~~~~~~~~~---------------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~  146 (294)
                      |+.+++.+..+...               ..|...|++++|+| ++++|++|+.||.|++||...               
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~-~~~~l~s~~~dg~v~i~~~~~---------------  152 (388)
T d1erja_          89 RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIEN---------------  152 (388)
T ss_dssp             ETTTCCEEEEECC-----------------CCCCBEEEEEECT-TSSEEEEEETTSCEEEEETTT---------------
T ss_pred             EecccceEeeecccccccccccccccccccCCCCCEEEEEECC-CCCcceecccccccccccccc---------------
Confidence            99998887665421               24777899999999 899999999999999999987               


Q ss_pred             CCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcc
Q 022590          147 SKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSC  224 (294)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  224 (294)
                              ........+|...|.++.++  +..+++++.++.+++||.++..         .......+. ....+.+.+
T Consensus       153 --------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~~~~~~~-~~~~~~~~~  214 (388)
T d1erja_         153 --------RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ---------CSLTLSIED-GVTTVAVSP  214 (388)
T ss_dssp             --------TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------EEEEEECSS-CEEEEEECS
T ss_pred             --------cccccccccccccccccccccccccccccccceeeeeeeccccc---------ccccccccc-ccccccccC
Confidence                    44566778899999999997  7799999999999999998653         334444443 444555555


Q ss_pred             cCCcceEEEEcCCCeEEEEeccCCCceeeeecc---ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          225 DFHYNAAAIGNREGKIFVWELQSSPPVLIARLS---HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       225 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      ... .+|++|+.||.|++|+.++..........   ...|..+|.+++|+|++++|++|+.||.|++||++.
T Consensus       215 ~~~-~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~  285 (388)
T d1erja_         215 GDG-KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN  285 (388)
T ss_dssp             TTC-CEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCC-CeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccC
Confidence            332 68999999999999999988644332221   336788999999999999999999999999999863

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-34  Score=220.18  Aligned_cols=242  Identities=19%  Similarity=0.329  Sum_probs=166.5

Q ss_pred             cccccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc--CcceEEEEeCCCCCceEEEeeCCCcEEE
Q 022590            3 YVDQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH--GDSINEIRTQPLKPSLVVSASKDESVRL   80 (294)
Q Consensus         3 ~~~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~dg~i~v   80 (294)
                      .++.|+++|++++|+  |++  +|++|+.||.|++|+....+.......+  ........+.+ ++.++++++.|+.|++
T Consensus        48 ~l~~H~~~V~~l~~s--~~~--~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i  122 (355)
T d1nexb2          48 QLSGHDGGVWALKYA--HGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHV  122 (355)
T ss_dssp             EEECCSSCEEEEEEE--TTT--EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEET-TEEEEEEEETTSEEEE
T ss_pred             EEECCCCCEEEEEEc--CCC--EEEEEeccccccccccccccccccccccccccccccccccc-ccceeeeecCCCcEEE
Confidence            456899999999997  654  7999999999999999888766555433  33445566777 7788888899999999


Q ss_pred             EEcCCCceEEEeec------------------------------------------------------------cCCCCC
Q 022590           81 WNVQTGICILIFAG------------------------------------------------------------AGGHRN  100 (294)
Q Consensus        81 wd~~~~~~~~~~~~------------------------------------------------------------~~~~~~  100 (294)
                      ||+.+.........                                                            ..++..
T Consensus       123 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~  202 (355)
T d1nexb2         123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD  202 (355)
T ss_dssp             EECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             EEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccc
Confidence            98865433211100                                                            002333


Q ss_pred             ceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEEE
Q 022590          101 EVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFILS  180 (294)
Q Consensus       101 ~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~  180 (294)
                      .+.++.|+| .+.++++++.|+.|++||+++                       ......+.+|...|.++.+++++|++
T Consensus       203 ~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~-----------------------~~~~~~~~~h~~~v~~~~~~~~~l~~  258 (355)
T d1nexb2         203 RIYSTIYDH-ERKRCISASMDTTIRIWDLEN-----------------------GELMYTLQGHTALVGLLRLSDKFLVS  258 (355)
T ss_dssp             CEEEEEEET-TTTEEEEEETTSCEEEEETTT-----------------------CCEEEEECCCSSCCCEEEECSSEEEE
T ss_pred             ccccccccc-cceeeecccccceEEeeeccc-----------------------cccccccccccccccccccccceeee
Confidence            444445554 444455555555555555544                       34566778899999999999999999


Q ss_pred             eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE-EEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecccc
Q 022590          181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI-KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHA  259 (294)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~  259 (294)
                      ++.||.|++||+++..           ..+..+...+..+ .+++++  .++++| .||.|++||+++++.+.. .+  .
T Consensus       259 ~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~l~~g-~d~~i~vwd~~tg~~~~~-~~--~  321 (355)
T d1nexb2         259 AAADGSIRGWDANDYS-----------RKFSYHHTNLSAITTFYVSD--NILVSG-SENQFNIYNLRSGKLVHA-NI--L  321 (355)
T ss_dssp             ECTTSEEEEEETTTCC-----------EEEEEECTTCCCCCEEEECS--SEEEEE-ETTEEEEEETTTCCBCCS-CT--T
T ss_pred             eecccccccccccccc-----------eecccccCCceEEEEEcCCC--CEEEEE-eCCEEEEEECCCCCEEEE-Ee--c
Confidence            9999999999998653           1223334444444 456665  455555 589999999999874322 22  2


Q ss_pred             ccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          260 QSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       260 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      +|..+|.+++|+|+ .++++++.||.++||.+
T Consensus       322 ~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         322 KDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            67789999999987 47888899998766543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-32  Score=205.18  Aligned_cols=199  Identities=24%  Similarity=0.394  Sum_probs=179.6

Q ss_pred             cccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      ..|...+.++.|+  |+++ .+++++.|+.+++||+.+++....+.+|...+.+++|+| ++.+|++++.|+.|++|++.
T Consensus        98 ~~~~~~~~~~~~~--~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~v~~~~~~  173 (317)
T d1vyhc1          98 HGHDHNVSSVSIM--PNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVA  173 (317)
T ss_dssp             CCCSSCEEEEEEC--SSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT
T ss_pred             ccccccceeeecc--CCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeeeccc-CCCEEEEEeCCCeEEEEeec
Confidence            4678889999987  8888 999999999999999999999999999999999999999 88999999999999999999


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCC-------------------CceEEeeecCCcEEEEeccccccccccceeecCC
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSD-------------------IYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDL  145 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~-------------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~  145 (294)
                      +++....+.   +|...+.++.|+|..                   +.++++++.|+.|++||+++              
T Consensus       174 ~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~--------------  236 (317)
T d1vyhc1         174 TKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST--------------  236 (317)
T ss_dssp             TCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT--------------
T ss_pred             cceeeEEEe---cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCC--------------
Confidence            999988887   699999999998732                   34688999999999999998              


Q ss_pred             CCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc
Q 022590          146 PSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS  223 (294)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  223 (294)
                               ..++..+.+|...|.++.|+  +++|++++.||.|++||+++++         .+..+..|...|++++|+
T Consensus       237 ---------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~h~~~V~~~~~s  298 (317)
T d1vyhc1         237 ---------GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR---------CMKTLNAHEHFVTSLDFH  298 (317)
T ss_dssp             ---------TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC---------CCEEEECCSSCEEEEEEC
T ss_pred             ---------CcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc---------EEEEEcCCCCCEEEEEEc
Confidence                     45567788899999999997  7899999999999999998765         567788899999999999


Q ss_pred             ccCCcceEEEEcCCCeEEEEe
Q 022590          224 CDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       224 ~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      |++  .+|++|+.||.|++||
T Consensus       299 ~~~--~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         299 KTA--PYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSS--SCEEEEETTSEEEEEC
T ss_pred             CCC--CEEEEEeCCCeEEEeC
Confidence            998  5899999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-31  Score=204.72  Aligned_cols=232  Identities=19%  Similarity=0.283  Sum_probs=172.5

Q ss_pred             EEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEe
Q 022590           38 IDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS  117 (294)
Q Consensus        38 w~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~  117 (294)
                      |+..+.++.+.+++|.+.|.+ ++++ ++++|+||+.||+|+|||+.+++++..+.   +|...|.+++|+|   .+|++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~-~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~---~h~~~V~~v~~~~---~~l~s   72 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLV---GHTGGVWSSQMRD---NIIIS   72 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEE-ETTEEEEEETTSCEEEEETTTCCEEEECC---CCSSCEEEEEEET---TEEEE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEE-CCCEEEEEeCCCeEEEEECCCCCEEEEEe---CCCCCEEEEEeCC---Ccccc
Confidence            556677788899999999865 3555 67899999999999999999999998887   7999999999987   38999


Q ss_pred             eecCCcEEEEecccccccccccee-------------------------ecCCCCC--------C---------------
Q 022590          118 CGMDNTVKIWSMKEFWTYVEKSFT-------------------------WTDLPSK--------F---------------  149 (294)
Q Consensus       118 ~~~dg~i~~wd~~~~~~~~~~~~~-------------------------~~~~~~~--------~---------------  149 (294)
                      |+.|+.+++|+.............                         +......        .               
T Consensus        73 ~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (342)
T d2ovrb2          73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVS  152 (342)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEE
T ss_pred             ceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeee
Confidence            999999999998763221110000                         0000000        0               


Q ss_pred             ----C-----CceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEE
Q 022590          150 ----P-----TKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFI  220 (294)
Q Consensus       150 ----~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  220 (294)
                          .     ..........+..|...+....+++.++++++.||.|++||++..+         .+.....+...+.++
T Consensus       153 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~---------~~~~~~~~~~~v~~~  223 (342)
T d2ovrb2         153 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN---------CIHTLTGHQSLTSGM  223 (342)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCC---------EEEEECCCCSCEEEE
T ss_pred             ecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccce---------eeeEecccccceeEE
Confidence                0     0001122345566777788888889999999999999999998664         567777888888777


Q ss_pred             EEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          221 KFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       221 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .+++    .+|++++.||.|++||+...+...... .+..|...+.++.++  ++++++|+.||.|++||+++
T Consensus       224 ~~~~----~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         224 ELKD----NILVSGNADSTVKIWDIKTGQCLQTLQ-GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             EEET----TEEEEEETTSCEEEEETTTCCEEEEEC-STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             ecCC----CEEEEEcCCCEEEEEeccccccccccc-ccceeeeceeecccC--CCeeEEEcCCCEEEEEECCC
Confidence            6654    489999999999999999876433222 233566677777665  56999999999999999875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1.4e-29  Score=195.83  Aligned_cols=247  Identities=12%  Similarity=0.051  Sum_probs=179.2

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCC--eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .|...|.+++|+  |||+ +|++++.+.  .|++||.++++. ..+..|...|.+++|+| ++++|++++.++.+++|++
T Consensus        40 ~~~~~v~~~~~s--pDg~-~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~  114 (360)
T d1k32a3          40 PEPLRIRYVRRG--GDTK-VAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDL  114 (360)
T ss_dssp             SCCSCEEEEEEC--SSSE-EEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred             cCCCCEEEEEEC--CCCC-EEEEEEcCCCCEEEEEECCCCcE-EEeeCCCceEEeeeecc-cccccceeccccccccccc
Confidence            688999999998  9998 777665543  799999987765 45677999999999999 9999999999999999999


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEee----------ecCCcEEEEeccccccccccceeecCCCCCCCCce
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASC----------GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKY  153 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~----------~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  153 (294)
                      .+++....+.   .|...+.+++|+| ++.+|+.+          ..++.+++||+....                    
T Consensus       115 ~~~~~~~~~~---~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~--------------------  170 (360)
T d1k32a3         115 ETGKPTVIER---SREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--------------------  170 (360)
T ss_dssp             TTCCEEEEEE---CSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--------------------
T ss_pred             cccceeeeee---cccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCc--------------------
Confidence            9999888877   5888999999999 88878754          345578999998731                    


Q ss_pred             eeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCC----------------------------
Q 022590          154 VQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGT----------------------------  203 (294)
Q Consensus       154 ~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------------------  203 (294)
                          ......+...+..+.|+  |+.|++++.++.+++||............                            
T Consensus       171 ----~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  246 (360)
T d1k32a3         171 ----IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE  246 (360)
T ss_dssp             ----EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCC
T ss_pred             ----eeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccc
Confidence                22334455666667775  88999999999999998754321100000                            


Q ss_pred             ------ceeeeeeecCCCCeeEEEEcc----------cCC-cceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeE
Q 022590          204 ------ADILQKYPVPECDIWFIKFSC----------DFH-YNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR  266 (294)
Q Consensus       204 ------~~~~~~~~~~~~~i~~~~~~~----------~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  266 (294)
                            ...+..+.........+...+          .+. ..++++++.++.+++||+.+.+.   .     .+.+.|.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~-----~~~~~v~  318 (360)
T d1k32a3         247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV---T-----EVKNNLT  318 (360)
T ss_dssp             CCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE---E-----EEEEEEE
T ss_pred             eeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeE---E-----EecCCcC
Confidence                  000111111111222222222          221 12456667789999999988752   1     1224589


Q ss_pred             EEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          267 QTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       267 ~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      +++|+|||++|++++.||.|++||++.
T Consensus       319 ~~~~SpDG~~l~~~~~Dg~i~v~d~~~  345 (360)
T d1k32a3         319 DLRLSADRKTVMVRKDDGKIYTFPLEK  345 (360)
T ss_dssp             EEEECTTSCEEEEEETTSCEEEEESSC
T ss_pred             EEEECCCCCEEEEEECCCeEEEEECCC
Confidence            999999999999999999999999864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.8e-29  Score=194.40  Aligned_cols=242  Identities=12%  Similarity=0.120  Sum_probs=168.2

Q ss_pred             EEEEeecCCeEEEEEcCCcccccee----------cccCcceEEEEeCCCC----CceEEEeeCCCcEEEEEcCCCc---
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSF----------VGHGDSINEIRTQPLK----PSLVVSASKDESVRLWNVQTGI---   87 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~----------~~h~~~v~~~~~~~~~----~~~l~s~~~dg~i~vwd~~~~~---   87 (294)
                      ++++++.||.|++|++........+          ..+...+..++|.+..    ..++++++.||++++|++....   
T Consensus        81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~  160 (393)
T d1sq9a_          81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  160 (393)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence            7889999999999998654332222          2245567788887732    4689999999999999985321   


Q ss_pred             ------------eEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceee
Q 022590           88 ------------CILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQ  155 (294)
Q Consensus        88 ------------~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (294)
                                  ..........+...+++++|+| ++ +|++|+.||+|++||+++......                 .
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-dg-~lasgs~Dg~i~iwd~~~~~~~~~-----------------~  221 (393)
T d1sq9a_         161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RG-LIATGFNNGTVQISELSTLRPLYN-----------------F  221 (393)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-TS-EEEEECTTSEEEEEETTTTEEEEE-----------------E
T ss_pred             ceeeeeeccceecccceecccCCCCcEEEEEECC-CC-EEEEEeCCCcEEEEeecccccccc-----------------c
Confidence                        1112222234667799999999 65 799999999999999987432110                 1


Q ss_pred             eceEEeecCCCceeeccee--cceEEEeeCCC---eEEEecCCCCCCCCC----CCCceeeeeeecCCCCeeEEEEcccC
Q 022590          156 FPVFIASVHSNYVDCNRWL--GDFILSKSVDN---EIVLWEPKMKEQSPG----EGTADILQKYPVPECDIWFIKFSCDF  226 (294)
Q Consensus       156 ~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~---~i~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~  226 (294)
                      .....+.+|..+|.+++|+  +++|++|+.|+   .|++||+++++....    ............|...|++++|+|++
T Consensus       222 ~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~  301 (393)
T d1sq9a_         222 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG  301 (393)
T ss_dssp             ECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred             ccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC
Confidence            1233456799999999997  88999999887   499999987753111    01112223344688899999999998


Q ss_pred             CcceEEEEcCCCeEEEEeccCCCceeeeeccccccC---------------------CCeEEEEEccCC----------C
Q 022590          227 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK---------------------SPIRQTAMSYDG----------S  275 (294)
Q Consensus       227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---------------------~~v~~~~~s~~~----------~  275 (294)
                        ++|++|+.|+.|++||+++++.+...  .  +|.                     ..+.++.|.+.+          +
T Consensus       302 --~~l~S~s~D~~v~vWd~~~g~~~~~l--~--gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T d1sq9a_         302 --ETLCSAGWDGKLRFWDVKTKERITTL--N--MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNE  375 (393)
T ss_dssp             --SEEEEEETTSEEEEEETTTTEEEEEE--E--CCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSC
T ss_pred             --CeeEEECCCCEEEEEECCCCCEEEEE--C--CcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCC
Confidence              69999999999999999998644332  2  222                     345667766542          3


Q ss_pred             EEEEeccCCcEEEEec
Q 022590          276 TILSCCEDGAIWRWDA  291 (294)
Q Consensus       276 ~l~s~~~dg~i~vw~~  291 (294)
                      .|++++.|+.|++|.-
T Consensus       376 ~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         376 SLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             EEEEEETTTEEEEEEE
T ss_pred             EEEEEEcCCeEEEEeC
Confidence            5888888999999863

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.2e-28  Score=181.79  Aligned_cols=220  Identities=18%  Similarity=0.285  Sum_probs=164.3

Q ss_pred             ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcE
Q 022590           45 LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTV  124 (294)
Q Consensus        45 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i  124 (294)
                      .+.....|...|+|++|   ++++||+|+.||+|+|||+.+++++..+.   +|.+.|++++|+   +++|++|+.|+.|
T Consensus         7 ~i~~~~~~~~~V~c~~~---d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~---~H~~~V~~v~~~---~~~l~s~s~D~~i   77 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILT---GHTGSVLCLQYD---ERVIITGSSDSTV   77 (293)
T ss_dssp             CEECCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEEC---CCSSCEEEEECC---SSEEEEEETTSCE
T ss_pred             EEeccCCCCCCEEEEEE---cCCEEEEEeCCCeEEEEECCCCcEEEEEe---cCCCCEeeeecc---cceeecccccccc
Confidence            34455678889999775   56899999999999999999999999988   799999999874   5689999999999


Q ss_pred             EEEeccccccccccceeecC------CCCC--------------CCCceeeeceEEeecCCCceeecceecceEEEeeCC
Q 022590          125 KIWSMKEFWTYVEKSFTWTD------LPSK--------------FPTKYVQFPVFIASVHSNYVDCNRWLGDFILSKSVD  184 (294)
Q Consensus       125 ~~wd~~~~~~~~~~~~~~~~------~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d  184 (294)
                      ++|++...............      ....              ...............|...+..+.+....+++++.|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d  157 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD  157 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred             cccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCC
Confidence            99999874332221110000      0000              000111122345567888888888889999999999


Q ss_pred             CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCC
Q 022590          185 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP  264 (294)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  264 (294)
                      +.+++||+++.+         .+..+..+...+..+.++  +  .++++++.||.|++||+++.+...  ...  .+...
T Consensus       158 ~~i~~~d~~~~~---------~~~~~~~~~~~v~~~~~~--~--~~l~~~~~dg~i~i~d~~~~~~~~--~~~--~~~~~  220 (293)
T d1p22a2         158 RTIKVWNTSTCE---------FVRTLNGHKRGIACLQYR--D--RLVVSGSSDNTIRLWDIECGACLR--VLE--GHEEL  220 (293)
T ss_dssp             SEEEEEETTTCC---------EEEEEECCSSCEEEEEEE--T--TEEEEEETTSCEEEEETTTCCEEE--EEC--CCSSC
T ss_pred             CceeeecCCCCc---------EEEEEcccccccccccCC--C--CeEEEecCCCEEEEEecccceeee--eec--cccee
Confidence            999999998765         566777777777776665  3  479999999999999999886433  332  55566


Q ss_pred             eEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          265 IRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       265 v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      +..  +++++.+|++|+.||.|++||+.
T Consensus       221 v~~--~~~~~~~l~sg~~dg~i~iwd~~  246 (293)
T d1p22a2         221 VRC--IRFDNKRIVSGAYDGKIKVWDLV  246 (293)
T ss_dssp             EEE--EECCSSEEEEEETTSCEEEEEHH
T ss_pred             eee--ccccceEEEEEcCCCEEEEEECC
Confidence            654  56678899999999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-28  Score=187.11  Aligned_cols=255  Identities=10%  Similarity=0.021  Sum_probs=177.8

Q ss_pred             ccCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceE-EEEeCCCCCceEEEeeCCCcEEEEEcC
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSIN-EIRTQPLKPSLVVSASKDESVRLWNVQ   84 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~i~vwd~~   84 (294)
                      .|.++|.+++|+  |++..+|++|+.||.|++|+............+...+. ...+.+ +...+++++.|+++++||++
T Consensus        54 ~h~~~V~~v~f~--~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~  130 (342)
T d1yfqa_          54 RYKHPLLCCNFI--DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPR  130 (342)
T ss_dssp             ECSSCEEEEEEE--ESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHH
T ss_pred             CCCCCEEEEEEe--CCCCCEEEEcccccceeeeeccccccccccccccccccccccccc-ccccccccccccccceeecc
Confidence            689999999998  55444899999999999999988877666665554443 444455 77899999999999999987


Q ss_pred             CCceEEEeec---cCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe
Q 022590           85 TGICILIFAG---AGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA  161 (294)
Q Consensus        85 ~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (294)
                      .+........   ..........+.+.+ .+..+++++.|+.|++||++......                    .....
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~--------------------~~~~~  189 (342)
T d1yfqa_         131 NYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDN--------------------GTIEE  189 (342)
T ss_dssp             HHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCC--------------------CEEEE
T ss_pred             ccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcccc--------------------eeeee
Confidence            5543322211   111233455667777 77889999999999999998743211                    11112


Q ss_pred             ecCCCceeecce---ecceEEEeeCCCeEEEecCCCCCCCCCCCCceee------eeeecCCCCeeEEEEcccCCcceEE
Q 022590          162 SVHSNYVDCNRW---LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADIL------QKYPVPECDIWFIKFSCDFHYNAAA  232 (294)
Q Consensus       162 ~~~~~~i~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~~~~~~~~~l~  232 (294)
                      ..+...+.+..+   .+..+++++.||.+.+|+................      .....+...+.+++|+|++  .+|+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~--~~la  267 (342)
T d1yfqa_         190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH--KFLY  267 (342)
T ss_dssp             CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTT--CCEE
T ss_pred             cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCc--cEEE
Confidence            222233333333   2778999999999999998765443322221111      1123445678999999998  5899


Q ss_pred             EEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          233 IGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       233 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      +|+.||.|++||+++.+.  ...+.   +...+..++|+|++++|++++.|+.+++|..
T Consensus       268 sg~~Dg~v~vWD~~~~~~--l~~~~---~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         268 TAGSDGIISCWNLQTRKK--IKNFA---KFNEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEETTSCEEEEETTTTEE--EEECC---CCSSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             EECCCCEEEEEECCCCcE--EEEec---CCCCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            999999999999998763  33332   1235667889999999999998988777754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.8e-29  Score=188.37  Aligned_cols=223  Identities=15%  Similarity=0.142  Sum_probs=156.5

Q ss_pred             ccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC
Q 022590           43 EKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN  122 (294)
Q Consensus        43 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg  122 (294)
                      .++++++++|.++|++++|+|     |++|+.||+|++||+.++.     .   +|...|.++++++ + ..+++++.|+
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~~-----~---~h~~~V~~~~~~~-~-~~~~s~s~D~   67 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMH-----Q---DHSNLIVSLDNSK-A-QEYSSISWDD   67 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEEE-----C---CCCSCEEEEECCS-T-TCCEEEETTT
T ss_pred             cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCCC-----C---CCCCCEEEEEecC-C-CeEEEEeecc
Confidence            467889999999999999987     8999999999999986542     2   6999999999986 5 4589999999


Q ss_pred             cEEEEeccccccccccc-eeecCCCCC----CCCce-----eeeceEEeecCCCceeecceecceEEEeeCCC-eEEEec
Q 022590          123 TVKIWSMKEFWTYVEKS-FTWTDLPSK----FPTKY-----VQFPVFIASVHSNYVDCNRWLGDFILSKSVDN-EIVLWE  191 (294)
Q Consensus       123 ~i~~wd~~~~~~~~~~~-~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~-~i~iwd  191 (294)
                      ++++|++.......... .........    .....     ..........+...+.++..+++.+++++.++ .+++|+
T Consensus        68 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~  147 (287)
T d1pgua2          68 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFK  147 (287)
T ss_dssp             EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEE
T ss_pred             ccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeee
Confidence            99999987643211100 000000000    00000     00001111223344556666677888777765 799999


Q ss_pred             CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEc
Q 022590          192 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS  271 (294)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s  271 (294)
                      +...+.        .......+...+.+++|+|++  .+|++|+.||.|++||+.+.+..   ......|..+|.+++|+
T Consensus       148 ~~~~~~--------~~~~~~~~~~~v~~~~~s~~~--~~l~~g~~dg~i~i~d~~~~~~~---~~~~~~h~~~v~~~~~~  214 (287)
T d1pgua2         148 LSDLEV--------SFDLKTPLRAKPSYISISPSE--TYIAAGDVMGKILLYDLQSREVK---TSRWAFRTSKINAISWK  214 (287)
T ss_dssp             TTEEEE--------EEECSSCCSSCEEEEEECTTS--SEEEEEETTSCEEEEETTTTEEE---ECCSCCCSSCEEEEEEC
T ss_pred             ccccce--------eeeeeeccCCceeEEEeccCc--cccccccccccccceeecccccc---cccccccccccceeeec
Confidence            875431        122223356779999999999  58999999999999999887522   12233778899999998


Q ss_pred             cC----------CCEEEEeccCCcEEEEecCC
Q 022590          272 YD----------GSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       272 ~~----------~~~l~s~~~dg~i~vw~~~~  293 (294)
                      |.          +.+|++|+.|+.|++||++.
T Consensus       215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             CCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred             ccccccccccCCCCeeEeecCCCeEEEEECCC
Confidence            75          46899999999999999864

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=3e-26  Score=181.02  Aligned_cols=264  Identities=11%  Similarity=0.025  Sum_probs=171.1

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE--EeeccCCCCCce
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL--IFAGAGGHRNEV  102 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~v  102 (294)
                      ++++.+.||+|+|||+.+++.+.++..|. .+..++|+| ++++|++++.|++|++||+.+++...  .+....+|.+.+
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            56788899999999999999999999774 589999999 99999999999999999999887543  344333466667


Q ss_pred             eEEEEecCCCceE-EeeecCCcEEEEeccccccccccceee--------cCCCCC------CC----------Cce----
Q 022590          103 LSVDFHPSDIYRI-ASCGMDNTVKIWSMKEFWTYVEKSFTW--------TDLPSK------FP----------TKY----  153 (294)
Q Consensus       103 ~~l~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~--------~~~~~~------~~----------~~~----  153 (294)
                      .+++|+| +++++ +++..++.+++||..............        ......      ..          ...    
T Consensus       112 ~s~~~sp-DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         112 SSKFKGY-EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             ECCSTTC-TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EeeeecC-CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            7788888 66655 556689999999988744322111000        000000      00          000    


Q ss_pred             ----eeeceEEeecCCCceeeccee--cceEEEee-CCCeEEEecCCCCCCC----------------------------
Q 022590          154 ----VQFPVFIASVHSNYVDCNRWL--GDFILSKS-VDNEIVLWEPKMKEQS----------------------------  198 (294)
Q Consensus       154 ----~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~-~d~~i~iwd~~~~~~~----------------------------  198 (294)
                          ..........+...+..+.|+  +++++++. .+..+.+++..+++..                            
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (426)
T d1hzua2         191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST  270 (426)
T ss_dssp             ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred             EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence                000011122344445555554  44444333 3444555555433210                            


Q ss_pred             -----------------CCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE-------EcCCCeEEEEeccCCCceeee
Q 022590          199 -----------------PGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI-------GNREGKIFVWELQSSPPVLIA  254 (294)
Q Consensus       199 -----------------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~  254 (294)
                                       ......+....+..|...+..++|+|++  .+|++       +..+++|++||+.+.+.....
T Consensus       271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg--~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS--SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTC--SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCC--ceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence                             0001123456677788889999999999  46774       556889999999988644322


Q ss_pred             ec-----cccccCCCeEEEEEccCCCEEE-Ee----ccCCcEEEEecCC
Q 022590          255 RL-----SHAQSKSPIRQTAMSYDGSTIL-SC----CEDGAIWRWDAIP  293 (294)
Q Consensus       255 ~~-----~~~~~~~~v~~~~~s~~~~~l~-s~----~~dg~i~vw~~~~  293 (294)
                      ..     ....+...|.+++|||||++++ ++    +.+|.|+|||.++
T Consensus       349 ~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         349 LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             ECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             eccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence            11     1234566799999999999774 32    4688999999875

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=2.3e-23  Score=156.62  Aligned_cols=239  Identities=11%  Similarity=0.050  Sum_probs=170.9

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC   88 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~   88 (294)
                      .....++|+  |||+.++++++.++.|++||+.+++.+..+..+. .+..++|++++...++++..++.+.+|+..+++.
T Consensus        32 ~~p~~va~s--pdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (301)
T d1l0qa2          32 SNPMGAVIS--PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV  108 (301)
T ss_dssp             SSEEEEEEC--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceEEEEe--CCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeeccccccee
Confidence            445677776  9999444677889999999999999999888765 4688999994444666777888999999999998


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      ...+.    +...+.++.|+|++..+++++..++.+.+|+..+..                       ...... +...+
T Consensus       109 ~~~~~----~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~-~~~~~  160 (301)
T d1l0qa2         109 AGTVK----TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-----------------------VINTVS-VGRSP  160 (301)
T ss_dssp             EEEEE----CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-----------------------EEEEEE-CCSSE
T ss_pred             eeecc----ccccceEEEeecCCCeeeeeeccccceeeeeccccc-----------------------eeeecc-cCCCc
Confidence            88887    566788999999444555667778899999998732                       222222 23335


Q ss_pred             eeccee--cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEE-cCCCeEEEEe
Q 022590          169 DCNRWL--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIG-NREGKIFVWE  244 (294)
Q Consensus       169 ~~~~~~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d  244 (294)
                      ..+.++  +..++++.. ++.+.+|+....+         ....... ...+..+++++++...+++.. ..++.|++||
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D  230 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNS---------VIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID  230 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTE---------EEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred             eEEEeeccccceeeeccccccccccccccee---------eeecccc-cCCcceeeccccccccccccccceeeeeeeee
Confidence            555665  555555554 5677788776543         3333333 345678899999963233322 3457899999


Q ss_pred             ccCCCceeeeeccccccCCCeEEEEEccCCCEE-EEeccCCcEEEEecCC
Q 022590          245 LQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTI-LSCCEDGAIWRWDAIP  293 (294)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~s~~~dg~i~vw~~~~  293 (294)
                      +.+.+.  ...+.   ....+.+++|+|||++| ++++.|+.|++||+++
T Consensus       231 ~~t~~~--~~~~~---~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t  275 (301)
T d1l0qa2         231 TGTNKI--TARIP---VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT  275 (301)
T ss_dssp             TTTTEE--EEEEE---CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             cCCCeE--EEEEc---CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            998863  33333   22458999999999987 5778899999999875

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.8e-25  Score=172.55  Aligned_cols=190  Identities=12%  Similarity=0.062  Sum_probs=151.2

Q ss_pred             EEEEEeecC-CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCC--cEEEEEcCCCce
Q 022590           12 YTVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE--SVRLWNVQTGIC   88 (294)
Q Consensus        12 ~~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~   88 (294)
                      ++-.||  | ||+ ++|+++ +|.|++||+.++...+.  +|...|.+++|+| ++++|++++.+.  .|++||.++++.
T Consensus         6 ~~~~fS--P~dG~-~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~sp-Dg~~l~~~~~~~g~~v~v~d~~~~~~   78 (360)
T d1k32a3           6 FAEDFS--PLDGD-LIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGG-DTKVAFIHGTREGDFLGIYDYRTGKA   78 (360)
T ss_dssp             GEEEEE--ECGGG-CEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECS-SSEEEEEEEETTEEEEEEEETTTCCE
T ss_pred             hccccc--CCCCC-EEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECC-CCCEEEEEEcCCCCEEEEEECCCCcE
Confidence            345566  8 898 777765 57999999988776553  5899999999999 888888766553  799999988776


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      .. +.   .|...|.+++|+| ++.+|++++.++.+++|++..                       .........|...+
T Consensus        79 ~~-~~---~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~  130 (360)
T d1k32a3          79 EK-FE---ENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLET-----------------------GKPTVIERSREAMI  130 (360)
T ss_dssp             EE-CC---CCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTT-----------------------CCEEEEEECSSSCC
T ss_pred             EE-ee---CCCceEEeeeecc-cccccceeccccccccccccc-----------------------cceeeeeecccccc
Confidence            54 33   5999999999999 999999999999999999987                       33455667788888


Q ss_pred             eeccee--cceEEEe----------eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC
Q 022590          169 DCNRWL--GDFILSK----------SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR  236 (294)
Q Consensus       169 ~~~~~~--~~~l~~~----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~  236 (294)
                      .+++|+  +++|+.+          ..++.+++||+.+++          ......+...+..+.|+|++  ..|++++.
T Consensus       131 ~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~----------~~~~~~~~~~~~~~~~spdg--~~l~~~s~  198 (360)
T d1k32a3         131 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK----------IFAATTENSHDYAPAFDADS--KNLYYLSY  198 (360)
T ss_dssp             CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE----------EEECSCSSSBEEEEEECTTS--CEEEEEES
T ss_pred             cchhhccceeeeeeeccccccceeeccccceeeeccccCc----------eeeecccccccccccccCCC--CEEEEEeC
Confidence            889987  7777754          345579999998653          33344456678889999999  58999999


Q ss_pred             CCeEEEEeccCC
Q 022590          237 EGKIFVWELQSS  248 (294)
Q Consensus       237 dg~i~i~d~~~~  248 (294)
                      ++.+.+|+....
T Consensus       199 ~~~~~~~d~~~~  210 (360)
T d1k32a3         199 RSLDPSPDRVVL  210 (360)
T ss_dssp             CCCCCEECSSSS
T ss_pred             CCceEccccccc
Confidence            999999997654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=7.9e-24  Score=161.68  Aligned_cols=257  Identities=11%  Similarity=0.017  Sum_probs=170.0

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccC-----cceEEEEeCCCCCceEEEee---------
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG-----DSINEIRTQPLKPSLVVSAS---------   73 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~l~s~~---------   73 (294)
                      ...+.+++|+  |||+.++++++.++.|.+||+.+++.+..+..+.     ..+..++|+| ++++++++.         
T Consensus        33 ~~~~~~i~~s--pDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~  109 (337)
T d1pbyb_          33 GPTPMVPMVA--PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTH  109 (337)
T ss_dssp             TTCCCCEEEC--TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSC
T ss_pred             CCCccEEEEC--CCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcC-CCcEEEEeecCCcceeee
Confidence            3456778887  9999344677889999999999999888776543     3456799999 778777765         


Q ss_pred             ---CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCC
Q 022590           74 ---KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFP  150 (294)
Q Consensus        74 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~  150 (294)
                         .++.+.+||..+++....+.    +...+..++|+| ++.++++++.  .+.+||......................
T Consensus       110 ~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~  182 (337)
T d1pbyb_         110 FEVQPTRVALYDAETLSRRKAFE----APRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQ  182 (337)
T ss_dssp             EEECCCEEEEEETTTTEEEEEEE----CCSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCC
T ss_pred             ccccccceeeccccCCeEEEecc----ccCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCccccceec
Confidence               46788999999999888887    566788999999 8888888764  4788998874332221111100000000


Q ss_pred             CceeeeceEEeecCCCceee----cceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccC
Q 022590          151 TKYVQFPVFIASVHSNYVDC----NRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF  226 (294)
Q Consensus       151 ~~~~~~~~~~~~~~~~~i~~----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  226 (294)
                      ..  .........+......    ..+.......+..++.+.+||...+..        .......+...+..+.++|++
T Consensus       183 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  252 (337)
T d1pbyb_         183 PD--VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM--------AMREVRIMDVFYFSTAVNPAK  252 (337)
T ss_dssp             CB--CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE--------EEEEEEECSSCEEEEEECTTS
T ss_pred             CC--cceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE--------EEEEecCCCcceEEEEecccc
Confidence            00  0000000000000000    001122333445566789999887642        233444556677888899988


Q ss_pred             CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          227 HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       227 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                        .+++.+  ++.|++||+.+.+....  +.   +...+.+++|+|||++|++++.||.|+|||.++
T Consensus       253 --~~~~~~--~~~i~v~d~~~~~~~~~--~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t  310 (337)
T d1pbyb_         253 --TRAFGA--YNVLESFDLEKNASIKR--VP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             --SEEEEE--ESEEEEEETTTTEEEEE--EE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred             --eEEEEc--cccEEEEECCCCcEEEE--Ec---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence              455554  58899999999864333  32   235689999999999999999999999999874

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=4e-23  Score=158.31  Aligned_cols=255  Identities=8%  Similarity=-0.045  Sum_probs=165.3

Q ss_pred             cCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceE-EEeeCCCcEEEEEcCCCceEEEeeccC
Q 022590           19 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAG   96 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~   96 (294)
                      +++++ +|++++.+++|.+||+.+++.+++++ .|...+.+++|+| +++++ +++..++.|.+||+.+++.+..+....
T Consensus         5 ~~~~~-~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~   82 (346)
T d1jmxb_           5 KAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS   82 (346)
T ss_dssp             CTTCE-EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCCCc-EEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCeeeeeecccc
Confidence            48898 99999999999999999999998887 4566789999999 77665 666789999999999999888776321


Q ss_pred             C---CCCceeEEEEecCCCceEEeee------------cCCcEEEEeccccccccccceeecCCCCCC----CCc-----
Q 022590           97 G---HRNEVLSVDFHPSDIYRIASCG------------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKF----PTK-----  152 (294)
Q Consensus        97 ~---~~~~v~~l~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~----~~~-----  152 (294)
                      .   +...+..++|+| ++.++++++            .++.+.+|+..+............+.....    ...     
T Consensus        83 ~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          83 VPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             STTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             cccccCCceEEEEEec-CCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            1   112467899999 777776654            477889999887543322211111100000    000     


Q ss_pred             ---------eeeeceEEeecCCCceeeccee----------------------------cceEEEeeCCCeEEEecCCCC
Q 022590          153 ---------YVQFPVFIASVHSNYVDCNRWL----------------------------GDFILSKSVDNEIVLWEPKMK  195 (294)
Q Consensus       153 ---------~~~~~~~~~~~~~~~i~~~~~~----------------------------~~~l~~~~~d~~i~iwd~~~~  195 (294)
                               ........+..+ .....+.++                            ...++++..+..+.+||..++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         162 GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             SSSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             CCcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence                     000011111111 111112221                            112233344556777777765


Q ss_pred             CCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC
Q 022590          196 EQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS  275 (294)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  275 (294)
                      ..        .......+...+..+.+++++.  +++... ++.|.+||..+.+...  ...   +...+.+++|+|||+
T Consensus       241 ~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~v~v~d~~~~~~~~--~~~---~~~~~~~va~s~DG~  304 (346)
T d1jmxb_         241 KT--------HTQEFADLTELYFTGLRSPKDP--NQIYGV-LNRLAKYDLKQRKLIK--AAN---LDHTYYCVAFDKKGD  304 (346)
T ss_dssp             CE--------EEEEEEECSSCEEEEEECSSCT--TEEEEE-ESEEEEEETTTTEEEE--EEE---CSSCCCEEEECSSSS
T ss_pred             ce--------EEEEeecccceeEEEEEeCCCC--EEEEec-CCeEEEEECCCCcEEE--EEc---CCCCEEEEEEcCCCC
Confidence            42        2334445566788888888884  455444 4679999999886333  222   224689999999999


Q ss_pred             EEEEeccCCcEEEEecCC
Q 022590          276 TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       276 ~l~s~~~dg~i~vw~~~~  293 (294)
                      +|++++.||.|++||+++
T Consensus       305 ~l~v~~~d~~v~v~D~~t  322 (346)
T d1jmxb_         305 KLYLGGTFNDLAVFNPDT  322 (346)
T ss_dssp             CEEEESBSSEEEEEETTT
T ss_pred             EEEEEeCCCcEEEEECcc
Confidence            999999999999999975

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=2.4e-22  Score=158.39  Aligned_cols=120  Identities=9%  Similarity=-0.054  Sum_probs=93.2

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccc--c---eecccCcceEEEEeCCCCCce-EEEeeCCCcEEEEE
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLH--K---SFVGHGDSINEIRTQPLKPSL-VVSASKDESVRLWN   82 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~--~---~~~~h~~~v~~~~~~~~~~~~-l~s~~~dg~i~vwd   82 (294)
                      ..+..++|+  |||+ ++++++.||.|++||+.+++..  .   ....|.+.+.+..|+| ++++ +++++.+++|++||
T Consensus        62 ~~~~~v~fS--pDG~-~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~Sp-DG~~l~vs~~~~~~v~i~d  137 (432)
T d1qksa2          62 YAVHISRLS--ASGR-YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGW-EDKYAIAGAYWPPQYVIMD  137 (432)
T ss_dssp             SCEEEEEEC--TTSC-EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEETTEEEEEE
T ss_pred             CCeeEEEEC--CCCC-EEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCC-CCCEEEEEcCCCCeEEEEe
Confidence            468889887  9999 9999999999999999887642  2   2345667778888999 7775 47888899999999


Q ss_pred             cCCCceEEEeecc--------CCCCCceeEEEEecCCCceEEeeecCCcEEEEecccc
Q 022590           83 VQTGICILIFAGA--------GGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEF  132 (294)
Q Consensus        83 ~~~~~~~~~~~~~--------~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~  132 (294)
                      ..+++.+..+...        ..+......+.++|++..++++...++.|.+||....
T Consensus       138 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~  195 (432)
T d1qksa2         138 GETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL  195 (432)
T ss_dssp             TTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred             CccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCC
Confidence            9999988776531        1244566788999944455667778899999998763

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=2.3e-21  Score=152.73  Aligned_cols=244  Identities=12%  Similarity=-0.017  Sum_probs=160.5

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce--EEEeeccCCCCCce
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC--ILIFAGAGGHRNEV  102 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v  102 (294)
                      ++++.+.+|+|.|||..+++.+..+..+ ..+..++|+| +++++++++.|++|++||+.+++.  ...+....+|.+.+
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSp-DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECC-CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            5689999999999999999999999877 4699999999 999999999999999999988764  34444333455666


Q ss_pred             eEEEEecCCCce-EEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cc-eE
Q 022590          103 LSVDFHPSDIYR-IASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FI  178 (294)
Q Consensus       103 ~~l~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l  178 (294)
                      .+..|+| ++++ +++++.++.+++||..+..............            ......+......+.++  +. ++
T Consensus       112 ~s~~~Sp-DG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~------------~~~~~~~~~~~~~v~~s~dg~~~~  178 (432)
T d1qksa2         112 TSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY------------DEQEYHPEPRVAAILASHYRPEFI  178 (432)
T ss_dssp             ECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT------------TTCCEESCCCEEEEEECSSSSEEE
T ss_pred             EecccCC-CCCEEEEEcCCCCeEEEEeCccccceeeeccCCccc------------cceeccCCCceeEEEECCCCCEEE
Confidence            6677888 6665 5788899999999998843221111000000            00011122333444444  44 45


Q ss_pred             EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc-
Q 022590          179 LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-  257 (294)
Q Consensus       179 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-  257 (294)
                      ++...++.|.+||..+.+.       ..+..+. ....+..++|+|++. .+++++..++.+.++|..+.+........ 
T Consensus       179 vs~~~~~~i~~~d~~~~~~-------~~~~~i~-~g~~~~~~~~spdg~-~~~va~~~~~~v~v~d~~~~~~~~~~~~g~  249 (432)
T d1qksa2         179 VNVKETGKILLVDYTDLNN-------LKTTEIS-AERFLHDGGLDGSHR-YFITAANARNKLVVIDTKEGKLVAIEDTGG  249 (432)
T ss_dssp             EEETTTTEEEEEETTCSSE-------EEEEEEE-CCSSEEEEEECTTSC-EEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             EEEccCCeEEEEEccCCCc-------ceEEEEc-ccCccccceECCCCC-EEEEeccccceEEEeecccceEEEEeccCc
Confidence            6667789999999876541       1222222 345678899999995 34555566778999998765432211110 


Q ss_pred             ---------------------------------------ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          258 ---------------------------------------HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       258 ---------------------------------------~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                                                             +..+...+....++|++..+++++.++..++|...
T Consensus       250 ~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~  323 (432)
T d1qksa2         250 QTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA  323 (432)
T ss_dssp             SSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred             cccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecc
Confidence                                                   00111245566667777777777777777777643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=2.7e-22  Score=158.25  Aligned_cols=235  Identities=9%  Similarity=-0.042  Sum_probs=151.8

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce-----ecccCcceEEEEeCCCCCceE-EEeeCCCcEEEEE
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS-----FVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWN   82 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd   82 (294)
                      ..+..++|+  |||+ +|++++.||.|++||+.+++....     ..+|...+.+++|+| +++++ +++..++++++||
T Consensus        62 ~~~~~vafS--PDGk-~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp-DG~~l~v~~~~~~~v~i~d  137 (426)
T d1hzua2          62 YAVHISRMS--ASGR-YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY-EDRYTIAGAYWPPQFAIMD  137 (426)
T ss_dssp             SSEEEEEEC--TTSC-EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC-TTTEEEEEEEESSEEEEEE
T ss_pred             CCeeEEEEC--CCCC-EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC-CCCEEEEeecCCCeEEEEc
Confidence            458888887  9999 999999999999999998875432     235777788899999 77765 5556899999999


Q ss_pred             cCCCceEEEeeccC----------------------------------------------------CCCCceeEEEEecC
Q 022590           83 VQTGICILIFAGAG----------------------------------------------------GHRNEVLSVDFHPS  110 (294)
Q Consensus        83 ~~~~~~~~~~~~~~----------------------------------------------------~~~~~v~~l~~~~~  110 (294)
                      ..+++....+....                                                    ++...+..+.|+| 
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  216 (426)
T d1hzua2         138 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDS-  216 (426)
T ss_dssp             TTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECT-
T ss_pred             CCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECC-
Confidence            98776554332100                                                    2334456788888 


Q ss_pred             CCceEE-eeecCCcEEEEeccccccccccceeecCC-------------------------------CCCCCCceeeece
Q 022590          111 DIYRIA-SCGMDNTVKIWSMKEFWTYVEKSFTWTDL-------------------------------PSKFPTKYVQFPV  158 (294)
Q Consensus       111 ~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~  158 (294)
                      ++++++ +...+..+.+++.................                               .............
T Consensus       217 ~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~  296 (426)
T d1hzua2         217 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKV  296 (426)
T ss_dssp             TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEE
T ss_pred             CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEe
Confidence            544444 44456678888877643322111100000                               0000000111334


Q ss_pred             EEeecCCCceeeccee--cceEEE-------eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          159 FIASVHSNYVDCNRWL--GDFILS-------KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~--~~~l~~-------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                      ..+.+|...+..++|+  +.++++       ++.+++|++||+++++................+...+..++|+|+|+ .
T Consensus       297 ~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk-~  375 (426)
T d1hzua2         297 AELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD-E  375 (426)
T ss_dssp             EEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS-E
T ss_pred             EEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC-E
Confidence            5677899999999997  778884       55688999999998764221101001112334456788999999996 2


Q ss_pred             eEEEE----cCCCeEEEEeccCCC
Q 022590          230 AAAIG----NREGKIFVWELQSSP  249 (294)
Q Consensus       230 ~l~~~----~~dg~i~i~d~~~~~  249 (294)
                      +++++    +.+|.|++||.++.+
T Consensus       376 i~vs~~~~~~~~~~i~v~D~~T~k  399 (426)
T d1hzua2         376 VWFSVWNGKNDSSALVVVDDKTLK  399 (426)
T ss_dssp             EEEEECCCTTSCCEEEEEETTTTE
T ss_pred             EEEEEecCCCCCCeEEEEECCCCe
Confidence            33432    468999999999986

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=7e-20  Score=137.36  Aligned_cols=223  Identities=12%  Similarity=0.041  Sum_probs=160.2

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceE-EEeeCCCcEEEEEcCCCceEEEeeccCCCCCcee
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAGGHRNEVL  103 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  103 (294)
                      ..++++.|++|.+||+++++.++++... ..+..++|+| ++++| ++++.++.|++||+.+++.+..+.   .+ ..+.
T Consensus         4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~sp-dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~---~~-~~~~   77 (301)
T d1l0qa2           4 AYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVP---AG-SSPQ   77 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE---CS-SSEE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCceeeeee---cc-cccc
Confidence            3456788999999999999999888744 5578999999 77765 677789999999999999998887   34 3578


Q ss_pred             EEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceE-EE
Q 022590          104 SVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LS  180 (294)
Q Consensus       104 ~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~  180 (294)
                      .+.|++++...++++..++.+.+|+....                       .....+. +.....++.++  +..+ ++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~-~~~~~~~~~~~~dg~~~~~~  133 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSN-----------------------TVAGTVK-TGKSPLGLALSPDGKKLYVT  133 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTT-----------------------EEEEEEE-CSSSEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccceeeecccccc-----------------------eeeeecc-ccccceEEEeecCCCeeeee
Confidence            99999945556667778889999999873                       2233333 33445566665  5554 56


Q ss_pred             eeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccc
Q 022590          181 KSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQ  260 (294)
Q Consensus       181 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  260 (294)
                      +..++.+.+|+..+..         ....... ...+..+.++|++. .++++....+.+.+|+....+...  ...   
T Consensus       134 ~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~---  197 (301)
T d1l0qa2         134 NNGDKTVSVINTVTKA---------VINTVSV-GRSPKGIAVTPDGT-KVYVANFDSMSISVIDTVTNSVID--TVK---  197 (301)
T ss_dssp             ETTTTEEEEEETTTTE---------EEEEEEC-CSSEEEEEECTTSS-EEEEEETTTTEEEEEETTTTEEEE--EEE---
T ss_pred             eccccceeeeeccccc---------eeeeccc-CCCceEEEeecccc-ceeeecccccccccccccceeeee--ccc---
Confidence            6678899999998654         3444443 34577899999985 344444556777788877664222  222   


Q ss_pred             cCCCeEEEEEccCCCEEEEec---cCCcEEEEecCC
Q 022590          261 SKSPIRQTAMSYDGSTILSCC---EDGAIWRWDAIP  293 (294)
Q Consensus       261 ~~~~v~~~~~s~~~~~l~s~~---~dg~i~vw~~~~  293 (294)
                      ....+..++++++++.++.++   .++.|++||+.+
T Consensus       198 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t  233 (301)
T d1l0qa2         198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT  233 (301)
T ss_dssp             CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred             ccCCcceeeccccccccccccccceeeeeeeeecCC
Confidence            224578899999999887654   346799999864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.88  E-value=1.7e-19  Score=139.50  Aligned_cols=274  Identities=8%  Similarity=-0.101  Sum_probs=154.3

Q ss_pred             cccCceeEEEEEeecCCCceEEEEe-----ecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee------
Q 022590            5 DQKEESFYTVSWACNVDGIPFLVAG-----GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS------   73 (294)
Q Consensus         5 ~~h~~~v~~~~~~~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------   73 (294)
                      ..+..++..++++  |+|+ .++..     +..+.|.+||..+++.+.++..+..+  .++|+| ++++|++++      
T Consensus        17 ~~~~~p~~~~a~s--pdg~-~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~Sp-DG~~l~va~~~~~~~   90 (373)
T d2madh_          17 GAADGPTNDEAPG--ADGR-RSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAH-SGSEFALASTSFSRI   90 (373)
T ss_pred             ccCCCCccccccC--CCCC-EEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcC-CCCEEEEEeecCCcc
Confidence            3677889999987  9999 55543     23467999999999999988766544  799999 888888764      


Q ss_pred             ----CCCcEEEEEcCCCceEEEeeccCCCCCc-------eeEEEEecCCCceEEee--ecCCcEEEEeccccccccccc-
Q 022590           74 ----KDESVRLWNVQTGICILIFAGAGGHRNE-------VLSVDFHPSDIYRIASC--GMDNTVKIWSMKEFWTYVEKS-  139 (294)
Q Consensus        74 ----~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------v~~l~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~-  139 (294)
                          .++.|.+||..+++.+..+..   +...       ...+.|++ ++..++..  ..++.+.+|+........... 
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~~~~~~---~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  166 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPIADIEL---PDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSDDQLLSS  166 (373)
T ss_pred             cccccceEEEEEECCCCcEEEEEec---CCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeEEEEecc
Confidence                467899999999988766652   2221       13355555 33333322  223455555554422111100 


Q ss_pred             ---eeecCCCCCC-----CCcee-------eeceEEe------ecCCCceeeccee-cceEEEeeCCCeEEEecCCCCCC
Q 022590          140 ---FTWTDLPSKF-----PTKYV-------QFPVFIA------SVHSNYVDCNRWL-GDFILSKSVDNEIVLWEPKMKEQ  197 (294)
Q Consensus       140 ---~~~~~~~~~~-----~~~~~-------~~~~~~~------~~~~~~i~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~  197 (294)
                         ..+.......     .....       .......      ...........+. +..++..+.++.+.+|+......
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  246 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA  246 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE
Confidence               0000000000     00000       0000000      0111112222333 34566667888999998876542


Q ss_pred             CCCC---CCceeeeeeecCCCCeeEEEEcccCCc--------ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeE
Q 022590          198 SPGE---GTADILQKYPVPECDIWFIKFSCDFHY--------NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIR  266 (294)
Q Consensus       198 ~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~  266 (294)
                      ....   ..................+++++++..        ..++....++.+.+||..+++...  .+   .+...+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~--~~---~~~~~~~  321 (373)
T d2madh_         247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS--QI---SLGHDVD  321 (373)
T ss_pred             EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE--Ee---cCCCCee
Confidence            1000   000000111111122334555555531        234556677889999999987433  33   2335689


Q ss_pred             EEEEccCCCE--EEEeccCCcEEEEecCC
Q 022590          267 QTAMSYDGST--ILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       267 ~~~~s~~~~~--l~s~~~dg~i~vw~~~~  293 (294)
                      .++|+|||+.  +++++.|+.|++||+.+
T Consensus       322 ~~a~spDG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         322 AISVAQDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             EEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            9999999984  46889999999999875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=3.3e-19  Score=135.61  Aligned_cols=257  Identities=12%  Similarity=0.112  Sum_probs=165.4

Q ss_pred             ccCceeEEEEEeecCCCceEE-EEeecCCeEEEEEcCCccccceec---ccCcceEEEEeCCCCCceEEEeeC-CCcEEE
Q 022590            6 QKEESFYTVSWACNVDGIPFL-VAGGINGIIRVIDVSNEKLHKSFV---GHGDSINEIRTQPLKPSLVVSASK-DESVRL   80 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~-dg~i~v   80 (294)
                      +|.+.+..|+|+  |||+ +| +++..|+.|++|++........+.   .+...+..++|+| ++++|++++. ++.|.+
T Consensus        34 ~~~~~v~~la~s--pDG~-~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~  109 (333)
T d1ri6a_          34 DVPGQVQPMVVS--PDKR-YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSV  109 (333)
T ss_dssp             ECSSCCCCEEEC--TTSS-EEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEE
T ss_pred             cCCCCEeEEEEe--CCCC-EEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceee
Confidence            677889999997  9999 66 555668999999997665433332   2445678899999 8888887764 778999


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      |+............. .+...+.++.++| +++++++++ .+..+.+|+..........                 ....
T Consensus       110 ~~~~~~~~~~~~~~~-~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------------~~~~  170 (333)
T d1ri6a_         110 TRLEDGLPVGVVDVV-EGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQ-----------------DPAE  170 (333)
T ss_dssp             EEEETTEEEEEEEEE-CCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEE-----------------EEEE
T ss_pred             eccccccceeccccc-CCCccceEEEeee-cceeeeccccccceeeEEEeccCCcceee-----------------ecee
Confidence            998766554443321 4667788999999 666666555 5567999998763211100                 0111


Q ss_pred             EeecCCCceeeccee--cceEE-EeeCCCeEEEecCCCCCCCCCCCCceeeeeee------cCCCCeeEEEEcccCCcce
Q 022590          160 IASVHSNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYP------VPECDIWFIKFSCDFHYNA  230 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~  230 (294)
                      ...........+.|+  +..++ +....+...+|+......     .........      ........++++++++ ..
T Consensus       171 ~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~-~~  244 (333)
T d1ri6a_         171 VTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG-----NIECVQTLDMMPENFSDTRWAADIHITPDGR-HL  244 (333)
T ss_dssp             EECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS-----CCEEEEEEECSCTTCCSCCCEEEEEECTTSS-EE
T ss_pred             eeeecCCCccEEEEeccceeEEeeccccCceEEEeeccccc-----ceeeeeeeeeeecCCCccccceeEEEecccC-ce
Confidence            112233344566665  44444 444566777777654332     111111111      1224466788999996 46


Q ss_pred             EEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEec-cCCcEEEEecC
Q 022590          231 AAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCC-EDGAIWRWDAI  292 (294)
Q Consensus       231 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~dg~i~vw~~~  292 (294)
                      ++.+..++.+.+|++........... .......+..++|+|||++|++++ .++.|.+|++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id  306 (333)
T d1ri6a_         245 YACDRTASLITVFSVSEDGSVLSKEG-FQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV  306 (333)
T ss_dssp             EEEETTTTEEEEEEECTTSCCEEEEE-EEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             eeecccCCeEEEEEEcCCCCEEEEEE-EeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence            66778889999999977643322221 113335578899999999887765 56889999764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=8.4e-20  Score=140.28  Aligned_cols=257  Identities=9%  Similarity=-0.023  Sum_probs=158.5

Q ss_pred             ecCCCceEEEEe-----ecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEe----------eCCCcEEEEE
Q 022590           18 CNVDGIPFLVAG-----GINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSA----------SKDESVRLWN   82 (294)
Q Consensus        18 ~~~~~~~~l~~~-----~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~----------~~dg~i~vwd   82 (294)
                      ++|||+ .+++.     ..++.|.+||..+++.+.++..+..+  .++|+| ++++|+++          ..|+.|++||
T Consensus         9 ~spdg~-~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~Sp-Dg~~l~v~~~~~~~~~~g~~d~~v~v~D   84 (355)
T d2bbkh_           9 PAPDAR-RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVAD-DGSFIAHASTVFSRIARGERTDYVEVFD   84 (355)
T ss_dssp             CCCCTT-EEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eCCCCC-EEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcC-CCCEEEEEeCCCccccccCCCCEEEEEE
Confidence            359999 55554     34567999999999999888766544  799999 77777654          3478999999


Q ss_pred             cCCCceEEEeeccCCCC----CceeEEEEecCCCceEEee--ecCCcEEEEecccccccccccee---------------
Q 022590           83 VQTGICILIFAGAGGHR----NEVLSVDFHPSDIYRIASC--GMDNTVKIWSMKEFWTYVEKSFT---------------  141 (294)
Q Consensus        83 ~~~~~~~~~~~~~~~~~----~~v~~l~~~~~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~---------------  141 (294)
                      ..+++.+..+.....+.    .....++|+| ++..++.+  +.+..+.+|+..+..........               
T Consensus        85 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_          85 PVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             CCCCCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence            99999888776422222    2346789999 77666655  45678999999875432211100               


Q ss_pred             ecCCCCC-------CCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec
Q 022590          142 WTDLPSK-------FPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV  212 (294)
Q Consensus       142 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  212 (294)
                      +......       ...............+...+....+.  +..++.++.++.+++|++..+....       +.....
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~~~  236 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF-------LPAVEA  236 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE-------CCCEES
T ss_pred             EcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEE-------EeccCC
Confidence            0000000       00000000000011122233344443  5678888999999999998765311       111111


Q ss_pred             C----------CCCeeEEEEcccCCcceEEEEcC----------CCeEEEEeccCCCceeeeeccccccCCCeEEEEEcc
Q 022590          213 P----------ECDIWFIKFSCDFHYNAAAIGNR----------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSY  272 (294)
Q Consensus       213 ~----------~~~i~~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~  272 (294)
                      +          ......+++++++.  .++....          ...|.+||..+.+...  .+..   ...+.+++|+|
T Consensus       237 ~~~~~~~~~~~p~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~--~~~~---~~~~~~~a~sp  309 (355)
T d2bbkh_         237 LTEAERADGWRPGGWQQVAYHRALD--RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA--KFEM---GHEIDSINVSQ  309 (355)
T ss_dssp             SCHHHHHTTEEECSSSCEEEETTTT--EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE--EEEE---EEEECEEEECC
T ss_pred             cccceEeeeeeccceEEEEEeCCCC--eEEEEeccCCceeecCCCCeEEEEeCCCCcEEE--EecC---CCCEEEEEEcC
Confidence            1          12234578888885  3333222          2479999999987433  3321   24578999999


Q ss_pred             CCC--EEEEeccCCcEEEEecCC
Q 022590          273 DGS--TILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       273 ~~~--~l~s~~~dg~i~vw~~~~  293 (294)
                      ||+  ++++++.|+.|++||+++
T Consensus       310 DG~~~l~v~~~~d~~i~v~D~~t  332 (355)
T d2bbkh_         310 DEKPLLYALSTGDKTLYIHDAES  332 (355)
T ss_dssp             SSSCEEEEEETTTTEEEEEETTT
T ss_pred             CCCeEEEEEECCCCEEEEEECCC
Confidence            997  456778899999999875

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.7e-17  Score=125.99  Aligned_cols=242  Identities=11%  Similarity=0.068  Sum_probs=157.8

Q ss_pred             EEEEeecCCeEEEEEcCCcccccee--cccCcceEEEEeCCCCCceEE-EeeCCCcEEEEEcCCCceEEEeeccCCCCCc
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVV-SASKDESVRLWNVQTGICILIFAGAGGHRNE  101 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  101 (294)
                      .+++++.|++|++|++++...+..+  ..|.+.+..|+|+| ++++|+ ++..|+.|++|++........+.....+...
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            5678889999999999765433333  35888999999999 788775 4556899999999866543332211135566


Q ss_pred             eeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceE
Q 022590          102 VLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFI  178 (294)
Q Consensus       102 v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l  178 (294)
                      +..++|+| ++++|++++ .++.+.+|+.....                     .........+...+.++.++  ++++
T Consensus        85 p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~---------------------~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          85 LTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGL---------------------PVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             CSEEEECT-TSSEEEEEETTTTEEEEEEEETTE---------------------EEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             ceEEEEcC-CCCEEeecccCCCceeeecccccc---------------------ceecccccCCCccceEEEeeecceee
Confidence            78899999 777777776 46789999877632                     11223344566667777776  6666


Q ss_pred             EEee-CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee--e
Q 022590          179 LSKS-VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA--R  255 (294)
Q Consensus       179 ~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~  255 (294)
                      +.++ .+..|.+|+........   .................++|++++. ....+....+...+++..........  .
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~g~~p~~i~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  218 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLV---AQDPAEVTTVEGAGPRHMVFHPNEQ-YAYCVNELNSSVDVWELKDPHGNIECVQT  218 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEE---EEEEEEEECSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEESSCTTSCCEEEEE
T ss_pred             eccccccceeeEEEeccCCcce---eeeceeeeeecCCCccEEEEeccce-eEEeeccccCceEEEeecccccceeeeee
Confidence            6655 45679999987654210   0001111222345567899999986 34455667778888887654322211  1


Q ss_pred             cc----ccccCCCeEEEEEccCCCEEEE-eccCCcEEEEecCC
Q 022590          256 LS----HAQSKSPIRQTAMSYDGSTILS-CCEDGAIWRWDAIP  293 (294)
Q Consensus       256 ~~----~~~~~~~v~~~~~s~~~~~l~s-~~~dg~i~vw~~~~  293 (294)
                      ..    ..........+++++++++++. +..++.+.+|++..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~  261 (333)
T d1ri6a_         219 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSE  261 (333)
T ss_dssp             EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             eeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcC
Confidence            11    1123345678899999987765 45677899998754

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=5.7e-18  Score=128.76  Aligned_cols=226  Identities=12%  Similarity=0.102  Sum_probs=151.0

Q ss_pred             EEEEeecCCeEEEEEcCCccccceeccc--CcceEEEEeCCCCCceE-EEeeCCCcEEEEEcCCCceEEEeeccC--CCC
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGH--GDSINEIRTQPLKPSLV-VSASKDESVRLWNVQTGICILIFAGAG--GHR   99 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~--~~~   99 (294)
                      |+++++.|++|+|||+.+++.+.++..+  ...+.+++|+| +++++ ++++.++.|.+||+.+++.+..+....  .+.
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            8999999999999999999999888653  45678999999 77766 567789999999999999988876311  112


Q ss_pred             CceeEEEEecCCCceEEeeec------------CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590          100 NEVLSVDFHPSDIYRIASCGM------------DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~~~------------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      ..+..++|+| ++.+++++..            ++.+.+||....                       ....... +...
T Consensus        82 ~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----------------------~~~~~~~-~~~~  136 (337)
T d1pbyb_          82 KSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-----------------------SRRKAFE-APRQ  136 (337)
T ss_dssp             ECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-----------------------EEEEEEE-CCSS
T ss_pred             cceeeEEEcC-CCcEEEEeecCCcceeeeccccccceeeccccCC-----------------------eEEEecc-ccCC
Confidence            3456899999 7777777653            567777887762                       2222222 3455


Q ss_pred             eeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccC-------------------
Q 022590          168 VDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDF-------------------  226 (294)
Q Consensus       168 i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------------------  226 (294)
                      +..+.|+  +.++++++.+  +.+||..+++.         ......+.. .....++|++                   
T Consensus       137 ~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (337)
T d1pbyb_         137 ITMLAWARDGSKLYGLGRD--LHVMDPEAGTL---------VEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             CCCEEECTTSSCEEEESSS--EEEEETTTTEE---------EEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             ceEEEEcCCCCEEEEEcCC--cceeeeecCcE---------EEEeecCCc-cccceecCCcceeeccccccceeeeeeee
Confidence            6677776  7788887644  67788876542         122111110 0000111111                   


Q ss_pred             ---CcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          227 ---HYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       227 ---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                         .......+..++.+.+|+..+++......   ..+...+..++++|++.+++.+  ++.|++||+++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~  269 (337)
T d1pbyb_         205 ARKDIDPADPTAYRTGLLTMDLETGEMAMREV---RIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK  269 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE---EECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT
T ss_pred             eeeccceeeecccCccEEEEEcCCCcEEEEEe---cCCCcceEEEEecccceEEEEc--cccEEEEECCC
Confidence               00122233456679999998876332222   2455678889999999988766  58899999875

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=5.1e-16  Score=118.90  Aligned_cols=213  Identities=11%  Similarity=-0.018  Sum_probs=122.5

Q ss_pred             EEEEEeecCCCceEEEEe----------ecCCeEEEEEcCCccccceecccCc-------ceEEEEeCCCCCceEEEe--
Q 022590           12 YTVSWACNVDGIPFLVAG----------GINGIIRVIDVSNEKLHKSFVGHGD-------SINEIRTQPLKPSLVVSA--   72 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~----------~~dg~i~iw~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~--   72 (294)
                      ..++|+  |||+ +|++.          ..|+.|++||..+++....+..+..       ....++|+| +++.++.+  
T Consensus        50 ~~~a~S--pDg~-~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~  125 (355)
T d2bbkh_          50 PNPVVA--DDGS-FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQF  125 (355)
T ss_dssp             CEEEEC--TTSS-CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEEC
T ss_pred             CceEEc--CCCC-EEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec-CCCeeEEecC
Confidence            356776  9999 66543          4578999999999988877654332       345689999 77766665  


Q ss_pred             eCCCcEEEEEcCCCceEEEeeccC------------------------------------------CCCCceeEEEEecC
Q 022590           73 SKDESVRLWNVQTGICILIFAGAG------------------------------------------GHRNEVLSVDFHPS  110 (294)
Q Consensus        73 ~~dg~i~vwd~~~~~~~~~~~~~~------------------------------------------~~~~~v~~l~~~~~  110 (294)
                      +.+..+.+|+..+++.+..+....                                          .+...+....+.+ 
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  204 (355)
T d2bbkh_         126 SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-  204 (355)
T ss_dssp             SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-
T ss_pred             CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC-
Confidence            456789999999887766554210                                          0111122223333 


Q ss_pred             CCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC-----
Q 022590          111 DIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV-----  183 (294)
Q Consensus       111 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~-----  183 (294)
                      ++..++.++.++.+++|++...............           .........+.....+.++  +..++....     
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~  273 (355)
T d2bbkh_         205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT-----------EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  273 (355)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC-----------HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcc-----------cceEeeeeeccceEEEEEeCCCCeEEEEeccCCce
Confidence            3334455555666666665543211100000000           0000000001111223332  444444332     


Q ss_pred             -----CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc
Q 022590          184 -----DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  250 (294)
Q Consensus       184 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  250 (294)
                           ...|.+||..+++         .+..+.. ...+..++|+|+++..+++++..++.|++||+++++.
T Consensus       274 ~~~~~~~~v~v~d~~t~~---------~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~  335 (355)
T d2bbkh_         274 RHKTASRFVVVLDAKTGE---------RLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE  335 (355)
T ss_dssp             CTTSCEEEEEEEETTTCC---------EEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             eecCCCCeEEEEeCCCCc---------EEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence                 2469999998765         3444433 2447789999999644677888899999999999873

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=1.1e-14  Score=112.22  Aligned_cols=242  Identities=9%  Similarity=-0.093  Sum_probs=139.6

Q ss_pred             EEEEeecCCCceEEEEee----------cCCeEEEEEcCCccccceeccc------------------------------
Q 022590           13 TVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGH------------------------------   52 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~h------------------------------   52 (294)
                      .++|+  |||+ +|++++          .++.|.+||..+++.+..+..+                              
T Consensus        70 ~~a~S--pDG~-~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          70 NPVAA--HSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             cEEEc--CCCC-EEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            56676  9999 777664          4578999999887654333211                              


Q ss_pred             -----------------CcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccC---CCCCceeEEEEecCCC
Q 022590           53 -----------------GDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAG---GHRNEVLSVDFHPSDI  112 (294)
Q Consensus        53 -----------------~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~  112 (294)
                                       .....++.++|++...+++.+.|+.+.+|+...++.........   +.......+.+.+ ++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  225 (373)
T d2madh_         147 GPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SG  225 (373)
T ss_pred             CCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-Cc
Confidence                             12234566677444456778888899999888777665543210   1112233444554 44


Q ss_pred             ceEEeeecCCcEEEEeccccccccccceeecCCCCCCCC-ceeeeceEEeecCCCceeecceecceEEEeeCCCeEEEec
Q 022590          113 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPT-KYVQFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWE  191 (294)
Q Consensus       113 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd  191 (294)
                       .++..+.++.+.+|+....................... ................+......+..++....++.+.+||
T Consensus       226 -~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d  304 (373)
T d2madh_         226 -RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             -eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence             45666778999999988743222111111100000000 0000000011111111111111255677778889999999


Q ss_pred             CCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEc
Q 022590          192 PKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMS  271 (294)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s  271 (294)
                      ..+++         .+..+. +...+..++|+||++..++++++.|+.|++||+.+++.  ...+.  .+....+.+++.
T Consensus       305 ~~t~~---------~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~--~~~~~--~~g~~P~~l~~~  370 (373)
T d2madh_         305 GLVGQ---------TSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ--DQSTV--ELGSGPQVLSVM  370 (373)
T ss_pred             CCCCc---------EEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE--EEEEC--CCCCCCcEEEEe
Confidence            98775         344443 34668899999999644667899999999999999974  44444  333455666665


Q ss_pred             cC
Q 022590          272 YD  273 (294)
Q Consensus       272 ~~  273 (294)
                      ++
T Consensus       371 ~~  372 (373)
T d2madh_         371 NE  372 (373)
T ss_pred             cC
Confidence            43

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.70  E-value=1.9e-15  Score=115.05  Aligned_cols=229  Identities=13%  Similarity=0.008  Sum_probs=142.3

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceeccc------CcceEEEEeCCCCCceEEEee-------
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGH------GDSINEIRTQPLKPSLVVSAS-------   73 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~l~s~~-------   73 (294)
                      +...+.+++|+  |||+.+++++..++.|++||+.+++.+..+...      ...+..++|+| +++++++++       
T Consensus        38 ~~~~p~~l~~s--pDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~-DG~~l~v~~~~~~~~~  114 (346)
T d1jmxb_          38 DKFGPGTAMMA--PDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLN  114 (346)
T ss_dssp             SCCSSCEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECS
T ss_pred             CCCCcceEEEC--CCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEec-CCCEEEEEecCCccee
Confidence            44566788887  999944577778999999999999887766432      23467899999 878777664       


Q ss_pred             -----CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccce-------e
Q 022590           74 -----KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSF-------T  141 (294)
Q Consensus        74 -----~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~  141 (294)
                           .++.+.+|+..+++....+... .....+..+.+++ ++.+++++   +.+.+|++.+.........       .
T Consensus       115 ~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (346)
T d1jmxb_         115 DHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD-DGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGY  189 (346)
T ss_dssp             SCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT-TSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTB
T ss_pred             eeeccCcceEEEEecccceeeeEEEee-eccCceEEEEecC-CCEEEEeC---CcceEEEccCCCEEEEEecCCCccceE
Confidence                 4778899999887655443321 1234456666766 66655542   4688888876432221110       0


Q ss_pred             ecCCCCCC-----C---------------------Cceee------------eceEEeecCCCceeeccee--cceEEEe
Q 022590          142 WTDLPSKF-----P---------------------TKYVQ------------FPVFIASVHSNYVDCNRWL--GDFILSK  181 (294)
Q Consensus       142 ~~~~~~~~-----~---------------------~~~~~------------~~~~~~~~~~~~i~~~~~~--~~~l~~~  181 (294)
                      +.......     .                     .....            ........+...+..+.++  +..++..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (346)
T d1jmxb_         190 SAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG  269 (346)
T ss_dssp             CCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE
T ss_pred             EeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEe
Confidence            00000000     0                     00000            0011223344445555554  3444443


Q ss_pred             eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeec
Q 022590          182 SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARL  256 (294)
Q Consensus       182 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  256 (294)
                      . ++.|.+||..+++         .+..... ...+.+++|+|++  .++++++.+|.|++||.++.+.+....+
T Consensus       270 ~-~~~v~v~d~~~~~---------~~~~~~~-~~~~~~va~s~DG--~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         270 V-LNRLAKYDLKQRK---------LIKAANL-DHTYYCVAFDKKG--DKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             E-ESEEEEEETTTTE---------EEEEEEC-SSCCCEEEECSSS--SCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             c-CCeEEEEECCCCc---------EEEEEcC-CCCEEEEEEcCCC--CEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            3 4689999998764         4444443 4568899999999  5888999999999999999875444443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=2.1e-15  Score=116.11  Aligned_cols=246  Identities=6%  Similarity=-0.092  Sum_probs=141.2

Q ss_pred             EEEEeecCCCceEEEEee----------cCCeEEEEEcCCccccceecccCc-------ceEEEEeCCCCCceEEEee-C
Q 022590           13 TVSWACNVDGIPFLVAGG----------INGIIRVIDVSNEKLHKSFVGHGD-------SINEIRTQPLKPSLVVSAS-K   74 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~l~s~~-~   74 (294)
                      .++|+  |||+ .|++.+          .|+.|.+||..+++++..+..+..       ....++|+| ++++|+.+. .
T Consensus        69 ~~a~s--pDg~-~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~  144 (368)
T d1mdah_          69 LAVAG--HSGS-DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFG  144 (368)
T ss_dssp             EEEEC--TTSS-CEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECS
T ss_pred             cceEC--CCCC-EEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCC
Confidence            46665  9998 666643          467899999999998887764432       234689999 777777665 5


Q ss_pred             CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCcee
Q 022590           75 DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYV  154 (294)
Q Consensus        75 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (294)
                      ++.+.+||+.+++....+..   +....    +.|.....++..+.||.+.++++...........              
T Consensus       145 ~~~v~~~d~~~~~~~~~~~~---~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~--------------  203 (368)
T d1mdah_         145 SSAAAGLSVPGASDDQLTKS---ASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG--------------  203 (368)
T ss_dssp             SSCEEEEEETTTEEEEEEEC---SSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECC--------------
T ss_pred             CCeEEEEECCCCcEeEEeec---cCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeee--------------
Confidence            79999999999998888763   32221    2222556678888899999999876322111000              


Q ss_pred             eeceEEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCC-----CceeeeeeecCCCCeeEEEEcccCCcc
Q 022590          155 QFPVFIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEG-----TADILQKYPVPECDIWFIKFSCDFHYN  229 (294)
Q Consensus       155 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~  229 (294)
                         ......+...+....+.....+.....+.+.+++...........     .........  ......+++++++...
T Consensus       204 ---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~a~~~~~~~~  278 (368)
T d1mdah_         204 ---AQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFR--SAGFQMVAKLKNTDGI  278 (368)
T ss_dssp             ---CCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEE--ECSSSCEEEETTTTEE
T ss_pred             ---cccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeec--CCCceeEEEcCCCCEE
Confidence               000111122222222321111222233444555544332100000     000000000  1122347788888522


Q ss_pred             eEEEEcC-------CCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCE--EEEeccCCcEEEEecCC
Q 022590          230 AAAIGNR-------EGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGST--ILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       230 ~l~~~~~-------dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~s~~~dg~i~vw~~~~  293 (294)
                      +++....       ...|.+||..+++..  ..+.   ....+.+++|+|||+.  ++++..|+.|++||..+
T Consensus       279 ~v~~~~~~~~~~~~~~~v~v~D~~t~~~~--~~~~---~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~t  346 (368)
T d1mdah_         279 MILTVEHSRSCLAAAENTSSVTASVGQTS--GPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS  346 (368)
T ss_dssp             EEEEEECSSCTTSCEEEEEEEESSSCCEE--ECCE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred             EEEecCCCceeecCCceEEEEECCCCcEe--EEec---CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCC
Confidence            2222111       235889999988633  3332   2246889999999973  46777899999999865

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.66  E-value=3.7e-14  Score=112.69  Aligned_cols=119  Identities=12%  Similarity=0.029  Sum_probs=87.8

Q ss_pred             ccccCceeEEEEEeecCCCceEEEEeec---------CCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC
Q 022590            4 VDQKEESFYTVSWACNVDGIPFLVAGGI---------NGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK   74 (294)
Q Consensus         4 ~~~h~~~v~~~~~~~~~~~~~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~   74 (294)
                      ++.|...|.++.|+  |||+ +|+.++.         ++.+.+||+.+++. ..+..|.+.+....|+| +++.+|.. .
T Consensus        57 ~~~~~~~i~~~~~S--pDg~-~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SP-DG~~ia~~-~  130 (470)
T d2bgra1          57 FDEFGHSINDYSIS--PDGQ-FILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSP-VGHKLAYV-W  130 (470)
T ss_dssp             TTTSSSCCCEEEEC--TTSS-EEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECS-STTCEEEE-E
T ss_pred             hhhccCccceeEEC--CCCC-EEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCcccccccccc-CcceeeEe-e
Confidence            34667789999987  9999 7777643         57889999998874 56778899999999999 88888885 5


Q ss_pred             CCcEEEEEcCCCceEEEeeccC---------------CCCCceeEEEEecCCCceEEeeecCCc-EEEEec
Q 022590           75 DESVRLWNVQTGICILIFAGAG---------------GHRNEVLSVDFHPSDIYRIASCGMDNT-VKIWSM  129 (294)
Q Consensus        75 dg~i~vwd~~~~~~~~~~~~~~---------------~~~~~v~~l~~~~~~~~~l~~~~~dg~-i~~wd~  129 (294)
                      ++.+.+|+..+++.........               ...+....+.|+| ++..|+....|.+ +..|.+
T Consensus       131 ~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP-DGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         131 NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP-NGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT-TSSEEEEEEEECTTCCEEEE
T ss_pred             cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECC-CCCccceeEecCCcCceEEE
Confidence            6789999998887665433100               0223356688999 8888888765543 554443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.52  E-value=2e-11  Score=90.89  Aligned_cols=240  Identities=10%  Similarity=0.024  Sum_probs=149.7

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCce-
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGIC-   88 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~-   88 (294)
                      .+..+++.  |||+ ++++...+++|..|+... + ...+......+.+++|.+ +++++++...++.+..++...... 
T Consensus        29 ~~e~iAv~--pdG~-l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          29 FLENLASA--PDGT-IFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             CEEEEEEC--TTSC-EEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CcCCEEEC--CCCC-EEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccc
Confidence            35567776  9999 899999999998888543 3 334555667899999999 888999888888888887754322 


Q ss_pred             EEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCce
Q 022590           89 ILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYV  168 (294)
Q Consensus        89 ~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  168 (294)
                      ...+... ......+.+.+.+ +++++++-+.++.+..++...........-...             ............
T Consensus       103 ~~~~~~~-~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~  167 (302)
T d2p4oa1         103 VETLLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPML-------------ARSNSESVFPAA  167 (302)
T ss_dssp             EEEEEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGG-------------SCSSTTCCSCSE
T ss_pred             eeecccc-CCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCcc-------------ceeeccCccccc
Confidence            2222211 2445689999999 888888888888888888776321110000000             000001111233


Q ss_pred             eecceecc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccC
Q 022590          169 DCNRWLGD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQS  247 (294)
Q Consensus       169 ~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  247 (294)
                      ..+.++++ ++++.+..+.|..++........      ..... ........+++.+++  ++.++...++.|..++...
T Consensus       168 ngi~~~~~~l~~~~~~~~~i~~~~~~~~~~~~------~~~~~-~~~~~pdgia~d~dG--~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         168 NGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPG------EPEIF-VEQTNIDDFAFDVEG--NLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEEBCTTSCBC------CCEEE-EESCCCSSEEEBTTC--CEEEECBTTCCEEEECTTC
T ss_pred             ccccccCCceeeecCCCCeEEecccccccccc------ccccc-cCCCCCcceEECCCC--CEEEEEcCCCcEEEECCCC
Confidence            45556644 55556678888888877543211      11111 112335579999998  5677777788899987765


Q ss_pred             CCceeeeeccccccCCCeEEEEE---ccCCCEEEEecc
Q 022590          248 SPPVLIARLSHAQSKSPIRQTAM---SYDGSTILSCCE  282 (294)
Q Consensus       248 ~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~s~~~  282 (294)
                      .. .......  ..-...++++|   ++|++.|..++.
T Consensus       239 ~~-~~~~~~~--~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         239 ST-TIIAQAE--QGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             CE-EEEECGG--GTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CE-EEEEecC--CCCCCceEEEEcCCCCCCCEEEEECC
Confidence            32 2222222  22345789999   678887776544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.49  E-value=6.1e-11  Score=86.14  Aligned_cols=234  Identities=11%  Similarity=0.018  Sum_probs=141.5

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI   91 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~   91 (294)
                      ..+++.  ++|+-+++..+..+.+..++............-......+++++ ++.++++....+.+++++-.+...+..
T Consensus        17 ~~vavd--~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~~~~   93 (260)
T d1rwia_          17 SGVAVD--SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQTVLP   93 (260)
T ss_dssp             EEEEEC--TTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred             CEEEEc--CCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccceeeee
Confidence            566775  89983444455667788777654332222112223457889999 778877777777777666555444333


Q ss_pred             eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeec
Q 022590           92 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  171 (294)
Q Consensus        92 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  171 (294)
                      ..    ......++++.+ +++++++-..+..+..++........                       ...........+
T Consensus        94 ~~----~~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~p~~i  145 (260)
T d1rwia_          94 FD----GLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTV-----------------------LPFTGLNDPDGV  145 (260)
T ss_dssp             CC----SCCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEE-----------------------CCCCSCCSCCEE
T ss_pred             ee----eeeecccccccc-cceeEeeccccccccccccccceeee-----------------------eeecccCCccee
Confidence            22    335678999998 77777766666667777665421100                       000011122344


Q ss_pred             cee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCC
Q 022590          172 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP  249 (294)
Q Consensus       172 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  249 (294)
                      +++  ++++++...++.|..+|......         .............+++.+++  +++++....+.|..++.....
T Consensus       146 ~~~~~g~~~v~~~~~~~i~~~d~~~~~~---------~~~~~~~~~~p~gi~~d~~g--~l~vsd~~~~~i~~~~~~~~~  214 (260)
T d1rwia_         146 AVDNSGNVYVTDTDNNRVVKLEAESNNQ---------VVLPFTDITAPWGIAVDEAG--TVYVTEHNTNQVVKLLAGSTT  214 (260)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTTCCE---------EECCCSSCCSEEEEEECTTC--CEEEEETTTTEEEEECTTCSC
T ss_pred             eecCCCCEeeecccccccccccccccee---------eeeeccccCCCccceeeeee--eeeeeecCCCEEEEEeCCCCe
Confidence            443  67777777888999999875431         11111223456789999887  577777778888888876553


Q ss_pred             ceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          250 PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ...   .. ...-.....|+++++|.++++-..+++|+..+.
T Consensus       215 ~~~---~~-~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         215 STV---LP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             CEE---CC-CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEE---Ec-cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            211   11 122245689999999998888777787776654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.49  E-value=6.1e-12  Score=96.70  Aligned_cols=229  Identities=13%  Similarity=0.069  Sum_probs=137.7

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecc------------------------------cCcceEEEEeCCCCCceEEE-ee
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVG------------------------------HGDSINEIRTQPLKPSLVVS-AS   73 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------------------h~~~v~~~~~~~~~~~~l~s-~~   73 (294)
                      .+++|+.+|.|++|++.+++.++++..                              |.-.......+| |+++|+. ..
T Consensus        13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtp-DGr~lfV~d~   91 (441)
T d1qnia2          13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRY-DGKYLFINDK   91 (441)
T ss_dssp             EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEE-EEEEEEEEET
T ss_pred             EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccC-CCCEEEEEcC
Confidence            477888999999999998876655421                              223445566678 7777754 45


Q ss_pred             CCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCce-EEeeecCCcE------------------EEEecccccc
Q 022590           74 KDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYR-IASCGMDNTV------------------KIWSMKEFWT  134 (294)
Q Consensus        74 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-l~~~~~dg~i------------------~~wd~~~~~~  134 (294)
                      .+++|.++|+.+++....+..  .+...+..++|+| +++. .+++..+..+                  ..+|..+...
T Consensus        92 ~~~rVavIDl~t~k~~~ii~i--P~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          92 ANTRVARIRLDIMKTDKITHI--PNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             TTTEEEEEETTTTEEEEEEEC--TTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             CCCEEEEEECCCCcEeeEEec--CCCCCccceEEec-cCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence            788999999999998877654  3667899999999 6553 3333333333                  2244443211


Q ss_pred             ccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEe-------------------------------
Q 022590          135 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSK-------------------------------  181 (294)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-------------------------------  181 (294)
                      ..+.                       .. ......+.++  |++++++                               
T Consensus       169 ~~qI-----------------------~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         169 AWQV-----------------------IV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             EEEE-----------------------EE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             eEEE-----------------------ec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence            1100                       00 0111122221  2332222                               


Q ss_pred             ----------eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCce
Q 022590          182 ----------SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPV  251 (294)
Q Consensus       182 ----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  251 (294)
                                +.++.+.+++....+         .+..++... ....+.++|+++ .+++++..+++|.+||+.+.+..
T Consensus       225 ~~~dGk~~~v~~~~v~vvd~~~~~~---------v~~~IPvgk-sPhGv~vSPDGk-yl~~~~~~~~tvsv~d~~k~~~~  293 (441)
T d1qnia2         225 AVKAGNFKTIGDSKVPVVDGRGESE---------FTRYIPVPK-NPHGLNTSPDGK-YFIANGKLSPTVSVIAIDKLDDL  293 (441)
T ss_dssp             HHHTTCCBCCTTCCCCEEECSSSCS---------SEEEECCBS-SCCCEEECTTSC-EEEEECTTSSBEEEEEGGGHHHH
T ss_pred             EecCCCEEEeCCCCcEEEEcccCCc---------eEEEEeCCC-CccCceECCCCC-EEEEeCCcCCcEEEEEeehhhhH
Confidence                      223445555443222         344555443 356799999996 35677899999999998763210


Q ss_pred             ee------eecc-ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          252 LI------ARLS-HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       252 ~~------~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      ..      ..+. .....-.....+|+++|..+.+...|..|..|++.
T Consensus       294 ~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         294 FEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             TTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             hhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            00      0000 11111234567899999989999999999999973

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.48  E-value=1e-12  Score=100.96  Aligned_cols=268  Identities=10%  Similarity=-0.012  Sum_probs=151.2

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCce-EEEeeCCCcE------
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSL-VVSASKDESV------   78 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~-l~s~~~dg~i------   78 (294)
                      |.-........  |||+.++++...+++|.++|+++++..+.+. .+...+..++|+| +++. .+++..+..+      
T Consensus        70 hhP~~s~t~gt--pDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          70 HHPHISMTDGR--YDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             CCCEEEEETTE--EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSS
T ss_pred             cCCCcceeccc--CCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcc
Confidence            44444444444  8999444666788999999999998877664 3567899999999 5552 3333333333      


Q ss_pred             ------------EEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCC-cEEEEecccccccc---------
Q 022590           79 ------------RLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDN-TVKIWSMKEFWTYV---------  136 (294)
Q Consensus        79 ------------~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~---------  136 (294)
                                  ..+|..+.+....+.    ..+.+..+.|+| ++.++++.+.+. .+..++..+.....         
T Consensus       147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~----v~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~  221 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAETMDVAWQVI----VDGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVER  221 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTTCSEEEEEE----ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHH
T ss_pred             cccccccccceEEeecCccceeeEEEe----cCCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccc
Confidence                        457888877777666    334678899999 777777666543 22222211100000         


Q ss_pred             ----ccceeecCCCCCC----CCceeeeceEEeecCCCceeeccee--cceE-EEeeCCCeEEEecCCCCCCCCC--CCC
Q 022590          137 ----EKSFTWTDLPSKF----PTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPG--EGT  203 (294)
Q Consensus       137 ----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~--~~~  203 (294)
                          ...-.........    ...........+... .....+.++  |+++ +++..++++.+||+.+......  ...
T Consensus       222 ~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~  300 (441)
T d1qnia2         222 IAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIEL  300 (441)
T ss_dssp             HHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCG
T ss_pred             eEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCc
Confidence                0000000000000    000001112222222 223445554  7765 5567899999999876432110  111


Q ss_pred             ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC-------Cc-eeeeecc---ccccCCCeEEEEEcc
Q 022590          204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS-------PP-VLIARLS---HAQSKSPIRQTAMSY  272 (294)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------~~-~~~~~~~---~~~~~~~v~~~~~s~  272 (294)
                      ...+.......-.....+|.+++  ..+.+...|..|..|++...       +. ....++.   ..+|...+.+.+++|
T Consensus       301 ~~~~~~~~~~glgplh~~fd~~g--~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~p  378 (441)
T d1qnia2         301 RDTIVAEPELGLGPLHTTFDGRG--NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDA  378 (441)
T ss_dssp             GGGEEECCBCCSCEEEEEECSSS--EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTC
T ss_pred             ceEEEeecccccCcccceecCCc--eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCC
Confidence            11222222222334556788887  67888899999999998421       10 1111221   247777788888999


Q ss_pred             CCCEEEEe---ccCCc
Q 022590          273 DGSTILSC---CEDGA  285 (294)
Q Consensus       273 ~~~~l~s~---~~dg~  285 (294)
                      ||+||+++   +.|..
T Consensus       379 dGk~l~s~~k~s~dr~  394 (441)
T d1qnia2         379 DGKWLVVLSKFSKDRF  394 (441)
T ss_dssp             CCCEEEEEESCCGGGS
T ss_pred             CCcEEEecCccccccC
Confidence            99999999   56654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.39  E-value=4.7e-09  Score=76.86  Aligned_cols=237  Identities=14%  Similarity=0.089  Sum_probs=148.6

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecc------cCcceEEEEeCCCCCceEEE-eeCCCcEEEEEc
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVG------HGDSINEIRTQPLKPSLVVS-ASKDESVRLWNV   83 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~l~s-~~~dg~i~vwd~   83 (294)
                      -..+++.  ++|+ ++++-..++.|++||.+ ++.+..+..      .......+++.+..+..+++ .+.++.|..++.
T Consensus        25 P~gvavd--~dg~-i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          25 PSGVAVN--AQND-IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             EEEEEEC--TTCC-EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             ccEEEEc--CCCC-EEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            3567776  8998 77777788999999964 655554421      11234556666534444444 345567777775


Q ss_pred             CCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeec
Q 022590           84 QTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASV  163 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (294)
                       .++....+..  ........+++.+ ++.++++....+.+.+++.....                      ........
T Consensus       101 -~g~~~~~~~~--~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~~----------------------~~~~g~~~  154 (279)
T d1q7fa_         101 -YGQFVRKFGA--TILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNV----------------------LHKFGCSK  154 (279)
T ss_dssp             -TSCEEEEECT--TTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE----------------------EEEEECTT
T ss_pred             -cccceeecCC--Ccccccceecccc-CCcEEEEeeccceeeEeccCCce----------------------eecccccc
Confidence             5666666643  3456678999998 77777777777778887765410                      00001122


Q ss_pred             CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeee--cCCCCeeEEEEcccCCcceEEEEc-CCC
Q 022590          164 HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGN-REG  238 (294)
Q Consensus       164 ~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~-~dg  238 (294)
                      +......++++  ++.+++....+.|++||....          .+..+.  ........+++.+++  +++++-. .++
T Consensus       155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~----------~~~~~g~~g~~~~P~giavD~~G--~i~Vad~~~~~  222 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ----------YLRQIGGEGITNYPIGVGINSNG--EILIADNHNNF  222 (279)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC----------EEEEESCTTTSCSEEEEEECTTC--CEEEEECSSSC
T ss_pred             cccccceeeeccceeEEeeeccccceeeeecCCc----------eeeeecccccccCCcccccccCC--eEEEEECCCCc
Confidence            33445555554  677777788899999997532          233332  233457789999998  4555543 455


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                      .|.+|+.. ++  ....+...........+++.|+|.+++ ++.+..|++|....
T Consensus       223 ~v~~f~~~-G~--~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~  273 (279)
T d1q7fa_         223 NLTIFTQD-GQ--LISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ  273 (279)
T ss_dssp             EEEEECTT-SC--EEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred             EEEEECCC-CC--EEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence            79999854 43  233332223334578999999997655 45788999998753

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.39  E-value=3.1e-11  Score=92.49  Aligned_cols=239  Identities=10%  Similarity=-0.109  Sum_probs=140.8

Q ss_pred             cCCCceEEEE--eecCC--eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee----------CCCcEEEEEcC
Q 022590           19 NVDGIPFLVA--GGING--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS----------KDESVRLWNVQ   84 (294)
Q Consensus        19 ~~~~~~~l~~--~~~dg--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~----------~dg~i~vwd~~   84 (294)
                      .++++...++  ...+|  .|.+||..+++.+.++..+..+  .++|+| +++.|++++          .|++|.+||..
T Consensus        28 ~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~sp-Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~  104 (368)
T d1mdah_          28 GAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPV  104 (368)
T ss_dssp             CCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTT
T ss_pred             CCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECC-CCCEEEEEcccCccccccccCCeEEEEECC
Confidence            3666632222  33444  4777799999998888876654  589999 888777654          47889999999


Q ss_pred             CCceEEEeeccCC----CCCceeEEEEecCCCceEEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           85 TGICILIFAGAGG----HRNEVLSVDFHPSDIYRIASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        85 ~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      +++.+..+.....    .......++|+| ++++++++. .++.+.+||+.+.+                       ...
T Consensus       105 t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~-----------------------~~~  160 (368)
T d1mdah_         105 TFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGAS-----------------------DDQ  160 (368)
T ss_dssp             TCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTE-----------------------EEE
T ss_pred             CCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCCeEEEEECCCCc-----------------------EeE
Confidence            9998887763111    112245799999 777776664 67999999998832                       222


Q ss_pred             EeecCCCceeecce-ecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          160 IASVHSNYVDCNRW-LGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       160 ~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ....+....  +.. ....++..+.||.+.+++.............   .....+...+....+.+++  ..+.  ...+
T Consensus       161 ~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g--~~~~--~~~~  231 (368)
T d1mdah_         161 LTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA---QCTGAQNCSSQAAQANYPG--MLVW--AVAS  231 (368)
T ss_dssp             EEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC---CSCTTSCBCSCCEEETTTT--EEEE--CBSS
T ss_pred             EeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeec---ccccccccceeecccccCc--EEEE--ecCC
Confidence            222222211  111 2557777888999999988765432110000   0111122233445666665  2332  3346


Q ss_pred             eEEEEeccCCCceeeeecccc--------ccCCCeEEEEEccCCCEEEEeccC---------CcEEEEecCC
Q 022590          239 KIFVWELQSSPPVLIARLSHA--------QSKSPIRQTAMSYDGSTILSCCED---------GAIWRWDAIP  293 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~s~~~d---------g~i~vw~~~~  293 (294)
                      .++++++...+..........        ........++++|++..++....+         ..|.+||..+
T Consensus       232 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t  303 (368)
T d1mdah_         232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV  303 (368)
T ss_dssp             CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred             CEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCC
Confidence            677777766543332222110        011223458899998877665332         2488898864

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.28  E-value=2.7e-10  Score=90.15  Aligned_cols=110  Identities=17%  Similarity=0.225  Sum_probs=86.0

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccce-----ecccCcceEEEEeCCCCCceEEEeeC---------CCc
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKS-----FVGHGDSINEIRTQPLKPSLVVSASK---------DES   77 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~l~s~~~---------dg~   77 (294)
                      ..+.|.  ++++ ++..  .++.+.+||+.+++....     +..|...|.++.|+| |+++|+.++.         ++.
T Consensus        20 ~~~~W~--~d~~-~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          20 YSLRWI--SDHE-YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCCEEC--SSSE-EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEE
T ss_pred             cCCEeC--CCCE-EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCce
Confidence            356786  7887 6654  478899999999986543     345667899999999 8888887743         567


Q ss_pred             EEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccc
Q 022590           78 VRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFW  133 (294)
Q Consensus        78 i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~  133 (294)
                      +.+||+.+++.. .+.   .+...+....|+| +++.+|.. .++.+.+|+...+.
T Consensus        94 ~~l~d~~~~~~~-~l~---~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~  143 (470)
T d2bgra1          94 YDIYDLNKRQLI-TEE---RIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLP  143 (470)
T ss_dssp             EEEEETTTTEEC-CSS---CCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSC
T ss_pred             EEEEECCCCccc-ccc---cCCcccccccccc-CcceeeEe-ecccceEEECCCCc
Confidence            889999888754 344   5888999999999 88888885 57789999988753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.9e-08  Score=73.10  Aligned_cols=215  Identities=9%  Similarity=0.031  Sum_probs=119.0

Q ss_pred             eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCC---cEEEEEcCCCceEEEeeccCCCCCceeEEEEecC
Q 022590           34 IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDE---SVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  110 (294)
Q Consensus        34 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~  110 (294)
                      .|.|.|.+ |...+.+..+...+..-+||| |++.||-.....   .+.+.+...+.......    +........|+| 
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSP-DGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~sp-   92 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVAS----FPRHNGAPAFSP-   92 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEEC----CSSCEEEEEECT-
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECC-CCCEEEEEEeeccCcceeeeecccCceeEEee----eecccccceecC-
Confidence            58888865 444455555678889999999 888887654433   36666666665544443    778889999999 


Q ss_pred             CCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecce--ec-ceEEEeeCCC-
Q 022590          111 DIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRW--LG-DFILSKSVDN-  185 (294)
Q Consensus       111 ~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~-~~l~~~~~d~-  185 (294)
                      ++..++.. ..++...++.......                      ................+  .+ ..+++...++ 
T Consensus        93 dg~~i~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  150 (269)
T d2hqsa1          93 DGSKLAFALSKTGSLNLYVMDLASG----------------------QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGR  150 (269)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTC----------------------CEEECCCCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred             CCCeeeEeeecCCccceeecccccc----------------------cceeeeeccccccccccccccccceecccccCC
Confidence            66555544 3444444443332110                      01111111111111112  13 3444444454 


Q ss_pred             -eEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCC
Q 022590          186 -EIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP  264 (294)
Q Consensus       186 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  264 (294)
                       .|.+.++....          ...............++|+++ .++......+...+|......... ...   .....
T Consensus       151 ~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~---~~~~~  215 (269)
T d2hqsa1         151 PQVYKVNINGGA----------PQRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGGV-QVL---SSTFL  215 (269)
T ss_dssp             CEEEEEETTSSC----------CEECCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTCCE-EEC---CCSSS
T ss_pred             ceEeeeeccccc----------ceeeecccccccccccccccc-eeEEEeecCCceeeeEeecccccc-eEe---ecCcc
Confidence             45555555442          122223344556678999996 344445555555555554433222 222   22345


Q ss_pred             eEEEEEccCCCEEEEecc---CCcEEEEecC
Q 022590          265 IRQTAMSYDGSTILSCCE---DGAIWRWDAI  292 (294)
Q Consensus       265 v~~~~~s~~~~~l~s~~~---dg~i~vw~~~  292 (294)
                      .....|||||+.|+-.+.   ...|+++++.
T Consensus       216 ~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         216 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             CEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             ccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            677899999998875543   3457888875

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.28  E-value=2.3e-08  Score=74.29  Aligned_cols=243  Identities=11%  Similarity=0.081  Sum_probs=137.1

Q ss_pred             eEEEEEeecCCCceEEEEeec-------CCeEEEEEcCCccccceecc----cCcceEEEEeCCCCCceEEEeeCCCcEE
Q 022590           11 FYTVSWACNVDGIPFLVAGGI-------NGIIRVIDVSNEKLHKSFVG----HGDSINEIRTQPLKPSLVVSASKDESVR   79 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~s~~~dg~i~   79 (294)
                      ...++|.  |+|+ +.++...       +|+|..||..+++.......    ....-..++|.+ +++.++++.....|.
T Consensus        20 ~EGpa~d--~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          20 AEGPVFD--KNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLL   95 (314)
T ss_dssp             CEEEEEC--TTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEE
T ss_pred             CeEeEEe--CCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEE
Confidence            3456775  9998 5544322       46798999887754332221    122357899999 777777777767788


Q ss_pred             EEEcCCCceEEEeeccCCCC-CceeEEEEecCCCceEEeeec---------------CCcEEEEeccccccccccceeec
Q 022590           80 LWNVQTGICILIFAGAGGHR-NEVLSVDFHPSDIYRIASCGM---------------DNTVKIWSMKEFWTYVEKSFTWT  143 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~-~~v~~l~~~~~~~~~l~~~~~---------------dg~i~~wd~~~~~~~~~~~~~~~  143 (294)
                      ..+...+..........+.. ...+.+++.+ ++.+.++-..               +|.|..++...            
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg------------  162 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG------------  162 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS------------
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeecC------------
Confidence            88876543322212111111 1357899998 7776665321               12222222211            


Q ss_pred             CCCCCCCCceeeeceEEeecCCCceeeccee--cc-----eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecC-CC
Q 022590          144 DLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-----FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVP-EC  215 (294)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-----~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~  215 (294)
                                   ........-..-+.++|+  ++     ++++-+..+.|..||+.......   .......+... ..
T Consensus       163 -------------~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~---~~~~~~~~~~~~~~  226 (314)
T d1pjxa_         163 -------------QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE---NKKVWGHIPGTHEG  226 (314)
T ss_dssp             -------------CEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE---EEEEEEECCCCSSC
T ss_pred             -------------ceeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccc---eeeEEEEccccccc
Confidence                         001111111222445554  22     44455677889988876432100   00111122211 22


Q ss_pred             CeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEEeccCCcEEEEecC
Q 022590          216 DIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILSCCEDGAIWRWDAI  292 (294)
Q Consensus       216 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~vw~~~  292 (294)
                      ....+++..++  ++.++....+.|.+||.+.++........    ....++++|.|+++ ++++.+.+|.|...++.
T Consensus       227 ~pdGiavD~~G--nlyVa~~~~g~I~~~dp~~g~~~~~i~~p----~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         227 GADGMDFDEDN--NLLVANWGSSHIEVFGPDGGQPKMRIRCP----FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEEBTTC--CEEEEEETTTEEEEECTTCBSCSEEEECS----SSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             cceeeEEecCC--cEEEEEcCCCEEEEEeCCCCEEEEEEECC----CCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            35678898888  56666667899999998877543333322    24578999999997 45667788888877764

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.23  E-value=2.9e-09  Score=78.96  Aligned_cols=206  Identities=9%  Similarity=-0.026  Sum_probs=128.9

Q ss_pred             ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEecccccc
Q 022590           55 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWT  134 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~  134 (294)
                      .+..+++.| +++++++...+++|..|+.. ++......    ....+.+++|.| +++++++...++.+..++......
T Consensus        29 ~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~-g~~~~~~~----~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          29 FLENLASAP-DGTIFVTNHEVGEIVSITPD-GNQQIHAT----VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             CEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEEE----CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTS
T ss_pred             CcCCEEECC-CCCEEEEeCCCCEEEEEeCC-CCEEEEEc----CCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccc
Confidence            578899999 88999999999999888864 44333333    667899999999 888888888888888888765211


Q ss_pred             ccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCc-eeeeeee
Q 022590          135 YVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTA-DILQKYP  211 (294)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~  211 (294)
                      ..                    ..............+.++  ++++++.+.++.+..+|...+......... .......
T Consensus       102 ~~--------------------~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  161 (302)
T d2p4oa1         102 TV--------------------ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSE  161 (302)
T ss_dssp             CE--------------------EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTT
T ss_pred             ce--------------------eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeecc
Confidence            10                    011111123345556554  777777777888888887765310000000 0000000


Q ss_pred             cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEec
Q 022590          212 VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDA  291 (294)
Q Consensus       212 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~  291 (294)
                      ........+.+.  +. .++++.+..+.|+.++.............  ........++++++|++.++...++.|..++.
T Consensus       162 ~~~~~~ngi~~~--~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p  236 (302)
T d2p4oa1         162 SVFPAANGLKRF--GN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIF--VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAP  236 (302)
T ss_dssp             CCSCSEEEEEEE--TT-EEEEEETTTTEEEEEEBCTTSCBCCCEEE--EESCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             Cccccccccccc--CC-ceeeecCCCCeEEeccccccccccccccc--cCCCCCcceEECCCCCEEEEEcCCCcEEEECC
Confidence            111234455554  33 46777788899999998765432222211  12234567999999998888888888888764


Q ss_pred             C
Q 022590          292 I  292 (294)
Q Consensus       292 ~  292 (294)
                      .
T Consensus       237 ~  237 (302)
T d2p4oa1         237 D  237 (302)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.18  E-value=1.5e-07  Score=70.05  Aligned_cols=237  Identities=10%  Similarity=0.003  Sum_probs=139.2

Q ss_pred             eEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeC----CCcEEEEEcCCC
Q 022590           11 FYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASK----DESVRLWNVQTG   86 (294)
Q Consensus        11 v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----dg~i~vwd~~~~   86 (294)
                      +..++|.  ++|+ +.++-..++.|.-|+.++++....+.........+++.+ +++++++...    .+.+...+...+
T Consensus        42 lEG~~~D--~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          42 LEGLNFD--RQGQ-LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEEEEEC--TTSC-EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cEeCEEC--CCCC-EEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence            4577886  8998 777877889999999877766555555566789999999 7887776533    233445555554


Q ss_pred             ceEEEeeccCCCCCceeEEEEecCCCceEEeeecC------CcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           87 ICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        87 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ......... .-....+.+++.+ ++++.++....      +.+..++....                        .+..
T Consensus       118 ~~~~~~~~~-~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~------------------------~~~~  171 (319)
T d2dg1a1         118 NLQDIIEDL-STAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFR------------------------TVTP  171 (319)
T ss_dssp             SCEEEECSS-SSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSC------------------------CEEE
T ss_pred             eeeeeccCC-CcccCCcceeEEe-ccceeecccccccccCcceeEEEecccc------------------------eeEE
Confidence            444433321 1234578899998 77765553221      12333332220                        1111


Q ss_pred             eecCCCceeeccee--cceE-EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCC
Q 022590          161 ASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNRE  237 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d  237 (294)
                      ....-...+.++|+  ++.| ++-+..+.|..||+......... .................+++..++  ++.++....
T Consensus       172 ~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~-~~~~~~~~~~~~~~PdGl~vD~~G--~l~Va~~~~  248 (319)
T d2dg1a1         172 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQP-FGATIPYYFTGHEGPDSCCIDSDD--NLYVAMYGQ  248 (319)
T ss_dssp             EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEE-EEEEEEEECCSSSEEEEEEEBTTC--CEEEEEETT
T ss_pred             EeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceecc-ccceeeeccCCccceeeeeEcCCC--CEEEEEcCC
Confidence            11122234567776  5544 55567889999998643211000 000001111112235678998888  577777788


Q ss_pred             CeEEEEeccCCCceeeeeccc--cccCCCeEEEEEccCCCEEEEec
Q 022590          238 GKIFVWELQSSPPVLIARLSH--AQSKSPIRQTAMSYDGSTILSCC  281 (294)
Q Consensus       238 g~i~i~d~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~  281 (294)
                      +.|.+||. .++.+....++.  ..+...+++++|.+++..+++..
T Consensus       249 g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         249 GRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             TEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            99999996 455444444331  23445688999999887776654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.16  E-value=6.4e-08  Score=73.51  Aligned_cols=255  Identities=8%  Similarity=-0.031  Sum_probs=135.4

Q ss_pred             ceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcccccee--cccCcceEEEEeCCCCCce--EEEee-CCCcEEEEEc
Q 022590            9 ESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSL--VVSAS-KDESVRLWNV   83 (294)
Q Consensus         9 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~--l~s~~-~dg~i~vwd~   83 (294)
                      ..+.-|+|+  |+++ +|++... +.+..|.+.....+...  .........+.+++ +++.  ++++. ..++|..+.+
T Consensus        40 ~~~s~la~s--~d~~-~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~  114 (365)
T d1jofa_          40 EPISWMTFD--HERK-NIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CCCSEEEEC--TTSS-EEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCEEEEc--CCCC-EEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEc
Confidence            345567776  9998 6766654 56788876543222221  11223456778888 6553  33332 2355555443


Q ss_pred             CCC-ceEEEe------------ec-cCCCCCceeEEEEecCCCceEEeeec-CCcEEEEeccccccccccceeecCCCCC
Q 022590           84 QTG-ICILIF------------AG-AGGHRNEVLSVDFHPSDIYRIASCGM-DNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        84 ~~~-~~~~~~------------~~-~~~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                      ... .....+            .. .......+.++.|+| ++++++++.. ...|.+|+........            
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~------------  181 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVE------------  181 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEE------------
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCcee------------
Confidence            221 111100            00 001233478999999 7776666643 4578888765421100            


Q ss_pred             CCCceeeeceEEeecCCCceeeccee--cceE-EEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec-------------
Q 022590          149 FPTKYVQFPVFIASVHSNYVDCNRWL--GDFI-LSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV-------------  212 (294)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------  212 (294)
                            ................+.|+  ++++ ++...+++|.+|++.......    .......+.             
T Consensus       182 ------~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  251 (365)
T d1jofa_         182 ------LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP----VYTHHSFPLIPPGIPDRDPETG  251 (365)
T ss_dssp             ------EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE----EEEEEEEESSCTTCCCBCTTTS
T ss_pred             ------eccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE----EEEeeeeccccccccccccccc
Confidence                  00011111223455667775  5555 445568899999987654210    011111111             


Q ss_pred             -CCCCeeEEEEcccCCcceEEEEc------CCCeEEEEeccCCCceeeeec--cccccCCCeEEEEEcc-CCCEEEEe-c
Q 022590          213 -PECDIWFIKFSCDFHYNAAAIGN------REGKIFVWELQSSPPVLIARL--SHAQSKSPIRQTAMSY-DGSTILSC-C  281 (294)
Q Consensus       213 -~~~~i~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~--~~~~~~~~v~~~~~s~-~~~~l~s~-~  281 (294)
                       .......+.++|+++  +|+++.      ..+.|..|++...........  ...........++++| +|++|+++ .
T Consensus       252 ~~~~~~~~i~~spdG~--~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         252 KGLYRADVCALTFSGK--YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             SBSEEEEEEEECTTSS--EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             cccCCccceEECCCCC--EEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeC
Confidence             112345689999995  555542      223477888766432221111  1112234467799998 78988766 5


Q ss_pred             cCCcEEEEecCC
Q 022590          282 EDGAIWRWDAIP  293 (294)
Q Consensus       282 ~dg~i~vw~~~~  293 (294)
                      .++.|.+|+++.
T Consensus       330 ~s~~v~v~~~~~  341 (365)
T d1jofa_         330 QEGWLEIYRWKD  341 (365)
T ss_dssp             SSCEEEEEEEET
T ss_pred             CCCeEEEEEEeC
Confidence            678999998754

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=2e-07  Score=67.52  Aligned_cols=218  Identities=11%  Similarity=0.049  Sum_probs=118.2

Q ss_pred             cCceeEEEEEeecCCCceEEEEeecC-C--eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee-CCCcEEEEE
Q 022590            7 KEESFYTVSWACNVDGIPFLVAGGIN-G--IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDESVRLWN   82 (294)
Q Consensus         7 h~~~v~~~~~~~~~~~~~~l~~~~~d-g--~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg~i~vwd   82 (294)
                      +.+.+..-+||  |||+ .||..... +  .+.+.+...+.. ..+..+........|+| ++..++... .++...++.
T Consensus        37 ~~~~~~sP~wS--PDGk-~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~~~~  111 (269)
T d2hqsa1          37 SPQPLMSPAWS--PDGS-KLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYV  111 (269)
T ss_dssp             ESSCEEEEEEC--TTSS-EEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT-TSSEEEEEECTTSSCEEEE
T ss_pred             CCCceeeeEEC--CCCC-EEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecC-CCCeeeEeeecCCccceee
Confidence            45566677887  9999 66655433 3  466666655544 45555778889999999 666665543 344443333


Q ss_pred             cC--CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE
Q 022590           83 VQ--TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI  160 (294)
Q Consensus        83 ~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (294)
                      ..  ........    ..........+++.....+++...+|...+|......                      .....
T Consensus       112 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~----------------------~~~~~  165 (269)
T d2hqsa1         112 MDLASGQIRQVT----DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING----------------------GAPQR  165 (269)
T ss_dssp             EETTTCCEEECC----CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS----------------------SCCEE
T ss_pred             cccccccceeee----eccccccccccccccccceecccccCCceEeeeeccc----------------------cccee
Confidence            32  22222222    2444445556777455566666666665555443311                      01111


Q ss_pred             eecCCCceeeccee--cceEEEeeC-CCe--EEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEE-E
Q 022590          161 ASVHSNYVDCNRWL--GDFILSKSV-DNE--IVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAI-G  234 (294)
Q Consensus       161 ~~~~~~~i~~~~~~--~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~  234 (294)
                      ............|+  +..++..+. .+.  +.+.|...+.           ..............|+|+|+  .|+. .
T Consensus       166 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~~p~~SPDG~--~i~f~s  232 (269)
T d2hqsa1         166 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-----------VQVLSSTFLDETPSLAPNGT--MVIYSS  232 (269)
T ss_dssp             CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-----------EEECCCSSSCEEEEECTTSS--EEEEEE
T ss_pred             eecccccccccccccccceeEEEeecCCceeeeEeeccccc-----------ceEeecCccccceEECCCCC--EEEEEE
Confidence            22233333334443  555555444 344  4444444322           12222344556788999996  4443 3


Q ss_pred             c--CCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC
Q 022590          235 N--REGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD  273 (294)
Q Consensus       235 ~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  273 (294)
                      .  ....|+++++.....   ..+.  ...+.+...+|||-
T Consensus       233 ~~~~~~~l~~~~~dg~~~---~~lt--~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         233 SQGMGSVLNLVSTDGRFK---ARLP--ATDGQVKFPAWSPY  268 (269)
T ss_dssp             EETTEEEEEEEETTSCCE---EECC--CSSSEEEEEEECCC
T ss_pred             cCCCCcEEEEEECCCCCE---EEEe--CCCCcEEeEEeCCC
Confidence            2  235688899987753   2333  33456788899983

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.06  E-value=1.9e-07  Score=69.18  Aligned_cols=199  Identities=10%  Similarity=-0.006  Sum_probs=119.4

Q ss_pred             EEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccC----cceEEEEeCCCCCceEEEeeC--------------
Q 022590           13 TVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHG----DSINEIRTQPLKPSLVVSASK--------------   74 (294)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~~~--------------   74 (294)
                      .++|.  ++|+ .++++...+.|...+.+............    ...+.+++.+ ++.+.++-..              
T Consensus        75 Gl~~~--~dg~-~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~  150 (314)
T d1pjxa_          75 GCQCD--RDAN-QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQE  150 (314)
T ss_dssp             EEEEC--SSSS-EEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSS
T ss_pred             eEEEe--CCCC-EEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceecc
Confidence            45554  8887 67777766778888876543222111111    1357899999 7877776422              


Q ss_pred             -CCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCC-----ceEEeeecCCcEEEEeccccccccccceeecCCCCC
Q 022590           75 -DESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI-----YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSK  148 (294)
Q Consensus        75 -dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~  148 (294)
                       +|.|..++. .++......    .-...+.++|+| ++     .++++-+..+.|..||+........           
T Consensus       151 ~~G~v~~~~~-dg~~~~~~~----~~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~-----------  213 (314)
T d1pjxa_         151 KFGSIYCFTT-DGQMIQVDT----AFQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN-----------  213 (314)
T ss_dssp             SCEEEEEECT-TSCEEEEEE----EESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEE-----------
T ss_pred             CCceEEEEee-cCceeEeeC----CcceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccce-----------
Confidence             223333333 334333332    223457899998 44     2555557788899888765211100           


Q ss_pred             CCCceeeeceEEeec-CCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEccc
Q 022590          149 FPTKYVQFPVFIASV-HSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCD  225 (294)
Q Consensus       149 ~~~~~~~~~~~~~~~-~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  225 (294)
                            ......+.. .......++++  |++.++....+.|.+||.+.++         ....+..+....++++|.|+
T Consensus       214 ------~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~---------~~~~i~~p~~~~t~~afg~d  278 (314)
T d1pjxa_         214 ------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQ---------PKMRIRCPFEKPSNLHFKPQ  278 (314)
T ss_dssp             ------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBS---------CSEEEECSSSCEEEEEECTT
T ss_pred             ------eeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCE---------EEEEEECCCCCEEEEEEeCC
Confidence                  001111111 12234456665  7777777788999999988654         33445555567889999998


Q ss_pred             CCcceEEEEcCCCeEEEEeccCC
Q 022590          226 FHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       226 ~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                      ++ .++++.+.+|.|..+++...
T Consensus       279 ~~-~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         279 TK-TIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             SS-EEEEEETTTTEEEEEECSSC
T ss_pred             CC-EEEEEECCCCcEEEEECCCC
Confidence            75 46677778898988887543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.95  E-value=1.4e-06  Score=66.03  Aligned_cols=250  Identities=10%  Similarity=0.077  Sum_probs=133.1

Q ss_pred             EEEEeec--CCeEEEEEcCC--ccc--ccee-cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCC
Q 022590           25 FLVAGGI--NGIIRVIDVSN--EKL--HKSF-VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGG   97 (294)
Q Consensus        25 ~l~~~~~--dg~i~iw~~~~--~~~--~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~   97 (294)
                      .|+.|+.  .+.|.++.++.  ++.  +... ......+..|+|+| ++++|+++.. +.+..|.+.....+...... .
T Consensus         4 ~l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~-d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~-~   80 (365)
T d1jofa_           4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDH-ERKNIYGAAM-KKWSSFAVKSPTEIVHEASH-P   80 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECT-TSSEEEEEEB-TEEEEEEEEETTEEEEEEEE-E
T ss_pred             EEEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcC-CCCEEEEEeC-CcEEEEEEeCCCCeEEEeee-c
Confidence            4666653  56787766543  332  1121 12445677899999 8888887765 56788877643322222110 1


Q ss_pred             CCCceeEEEEecCCCce--EEeee-cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEE-eecCCCceeecce
Q 022590           98 HRNEVLSVDFHPSDIYR--IASCG-MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFI-ASVHSNYVDCNRW  173 (294)
Q Consensus        98 ~~~~v~~l~~~~~~~~~--l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~  173 (294)
                      .......+.+++ ++..  ++++. ..+++..+.+....... ..+......      ....+... .......+.++.|
T Consensus        81 ~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~q~~~h~h~v~~  152 (365)
T d1jofa_          81 IGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFAGYG-NVFSVSETG------KLEKNVQNYEYQENTGIHGMVF  152 (365)
T ss_dssp             CCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSCCEE-EEEEECTTC------CEEEEEEEEECCTTCCEEEEEE
T ss_pred             CCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccCCCCcc-eeEeeeecc------eecCcccCcccCCCCcceEEEE
Confidence            234466788888 5553  33322 34566665543311100 000000000      00011111 1112234567888


Q ss_pred             e--cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeee--cCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCC
Q 022590          174 L--GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYP--VPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSS  248 (294)
Q Consensus       174 ~--~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  248 (294)
                      +  |++++++.. ...|.+|+.....      .........  ........++|+|+++ .+.++...++.|.+|++...
T Consensus       153 sPdG~~l~v~d~g~d~v~~~~~~~~g------~~~~~~~~~~~~~g~gPr~i~f~pdg~-~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         153 DPTETYLYSADLTANKLWTHRKLASG------EVELVGSVDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTS------CEEEEEEEECSSTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTT
T ss_pred             CCCCCEEEEeeCCCCEEEEEEccCCC------ceeeccceeecCCCCceEEEEECCCCc-eEEEeccCCCEEEEEEecCC
Confidence            6  777777654 4578888765432      111222222  2346788999999996 34466677899999999876


Q ss_pred             Cceeeeecc---------------ccccCCCeEEEEEccCCCEEEEecc------CCcEEEEecC
Q 022590          249 PPVLIARLS---------------HAQSKSPIRQTAMSYDGSTILSCCE------DGAIWRWDAI  292 (294)
Q Consensus       249 ~~~~~~~~~---------------~~~~~~~v~~~~~s~~~~~l~s~~~------dg~i~vw~~~  292 (294)
                      +........               ..........+.++|+|++|+++..      .+.|..|++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~  290 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR  290 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEec
Confidence            533222211               0011123567899999999987632      1236666654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.95  E-value=2.5e-07  Score=66.70  Aligned_cols=191  Identities=9%  Similarity=-0.038  Sum_probs=116.2

Q ss_pred             EEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE
Q 022590           12 YTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI   91 (294)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~   91 (294)
                      ..+++.  ++|+ ++++....+.+++++..+...+....+ .....++++.+ +++++++-..+..+..++.........
T Consensus        60 ~gvav~--~~g~-i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~  134 (260)
T d1rwia_          60 QGLAVD--GAGT-VYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVL  134 (260)
T ss_dssp             CCEEEC--TTCC-EEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEEC
T ss_pred             eEEEEc--CCCC-EEEeeeeeceeeeeeeccceeeeeeee-eeecccccccc-cceeEeeccccccccccccccceeeee
Confidence            456665  8887 777777777777666555444433332 34568999999 777777766666677777654433222


Q ss_pred             eeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeec
Q 022590           92 FAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCN  171 (294)
Q Consensus        92 ~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  171 (294)
                      ..   .-......+++.| +++++++...++.|..++......                       .............+
T Consensus       135 ~~---~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~-----------------------~~~~~~~~~~p~gi  187 (260)
T d1rwia_         135 PF---TGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQ-----------------------VVLPFTDITAPWGI  187 (260)
T ss_dssp             CC---CSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCE-----------------------EECCCSSCCSEEEE
T ss_pred             ee---cccCCcceeeecC-CCCEeeecccccccccccccccee-----------------------eeeeccccCCCccc
Confidence            11   1234567899999 778888888888899998776211                       11111222334556


Q ss_pred             cee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEec
Q 022590          172 RWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWEL  245 (294)
Q Consensus       172 ~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~  245 (294)
                      +++  ++++++....+.|..++......        ... ....-.....+++.+++  .++++-..++.|+.++.
T Consensus       188 ~~d~~g~l~vsd~~~~~i~~~~~~~~~~--------~~~-~~~~~~~P~~i~~d~~g--~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         188 AVDEAGTVYVTEHNTNQVVKLLAGSTTS--------TVL-PFTGLNTPLAVAVDSDR--TVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EECTTCCEEEEETTTTEEEEECTTCSCC--------EEC-CCCSCCCEEEEEECTTC--CEEEEEGGGTEEEEECC
T ss_pred             eeeeeeeeeeeecCCCEEEEEeCCCCeE--------EEE-ccCCCCCeEEEEEeCCC--CEEEEECCCCEEEEEeC
Confidence            664  67777777788888888754321        111 01112346788888887  46666566666665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.87  E-value=4.2e-06  Score=60.77  Aligned_cols=181  Identities=10%  Similarity=0.145  Sum_probs=117.5

Q ss_pred             EeecCCeEEEEEcCCccccceec-ccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEE
Q 022590           28 AGGINGIIRVIDVSNEKLHKSFV-GHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVD  106 (294)
Q Consensus        28 ~~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~  106 (294)
                      ..+.++.|..++. +++....+. ........+++.+ ++.++++....+.+.+++. .++.+..+... .+......++
T Consensus        88 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~-~~~~~~~~i~  163 (279)
T d1q7fa_          88 ERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCS-KHLEFPNGVV  163 (279)
T ss_dssp             ECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECT-TTCSSEEEEE
T ss_pred             ccCCccccccccc-cccceeecCCCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeeccccc-ccccccceee
Confidence            3445567777764 455444442 2345678899988 7788877777788888886 56666665422 3566788999


Q ss_pred             EecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEe--ecCCCceeeccee--cceEEEee
Q 022590          107 FHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIA--SVHSNYVDCNRWL--GDFILSKS  182 (294)
Q Consensus       107 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~--~~~l~~~~  182 (294)
                      +.+ +++++++....+.|++||.....                        +..+  .+.......++++  |+++++-.
T Consensus       164 ~d~-~g~i~v~d~~~~~V~~~d~~G~~------------------------~~~~g~~g~~~~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         164 VND-KQEIFISDNRAHCVKVFNYEGQY------------------------LRQIGGEGITNYPIGVGINSNGEILIADN  218 (279)
T ss_dssp             ECS-SSEEEEEEGGGTEEEEEETTCCE------------------------EEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             ecc-ceeEEeeeccccceeeeecCCce------------------------eeeecccccccCCcccccccCCeEEEEEC
Confidence            998 78888888888999999976511                        1111  1223334556665  77666644


Q ss_pred             -CCCeEEEecCCCCCCCCCCCCceeeeeeec--CCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCc
Q 022590          183 -VDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPP  250 (294)
Q Consensus       183 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  250 (294)
                       .++.|.+|+.. ++         .+..+..  .......+++.+++  . |++.+.++.|++|......+
T Consensus       219 ~~~~~v~~f~~~-G~---------~~~~~~~~~~~~~p~~vav~~dG--~-l~V~~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         219 HNNFNLTIFTQD-GQ---------LISALESKVKHAQCFDVALMDDG--S-VVLASKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             SSSCEEEEECTT-SC---------EEEEEEESSCCSCEEEEEEETTT--E-EEEEETTTEEEEEECSCCCC
T ss_pred             CCCcEEEEECCC-CC---------EEEEEeCCCCCCCEeEEEEeCCC--c-EEEEeCCCeEEEEEeeeecC
Confidence             34579999854 32         3333322  23457889999998  3 44556789999999877643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.83  E-value=7e-06  Score=60.80  Aligned_cols=202  Identities=9%  Similarity=0.031  Sum_probs=115.7

Q ss_pred             cceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC--Cc--EEEEec
Q 022590           54 DSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD--NT--VKIWSM  129 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d--g~--i~~wd~  129 (294)
                      ..+..++|.+ +++++++-...+.|.-|+...++....+.   ........|++++ ++.++++...+  ..  +...+.
T Consensus        40 ~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~---~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          40 LQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFV---SHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEE---CSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECT
T ss_pred             cCcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEe---CCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcC
Confidence            3456899998 78888877788999999987776665554   3556789999999 78777665332  23  333333


Q ss_pred             cccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeC------CCeEEEecCCCCCCCCCC
Q 022590          130 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSV------DNEIVLWEPKMKEQSPGE  201 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~------d~~i~iwd~~~~~~~~~~  201 (294)
                      .....  ..                   ......-......+.++  |++.++...      .+.+..++.....     
T Consensus       115 ~~~~~--~~-------------------~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~-----  168 (319)
T d2dg1a1         115 NGDNL--QD-------------------IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT-----  168 (319)
T ss_dssp             TSCSC--EE-------------------EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC-----
T ss_pred             CCcee--ee-------------------eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce-----
Confidence            33110  00                   00000011123334443  544443221      1234444443221     


Q ss_pred             CCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeee---ecc-ccccCCCeEEEEEccCCCEE
Q 022590          202 GTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIA---RLS-HAQSKSPIRQTAMSYDGSTI  277 (294)
Q Consensus       202 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~-~~~~~~~v~~~~~s~~~~~l  277 (294)
                           +......-...+.++|+|+++ .+.++-+..+.|+.|++.........   ... ........-.|++.++|++.
T Consensus       169 -----~~~~~~~~~~pnGia~s~dg~-~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~  242 (319)
T d2dg1a1         169 -----VTPIIQNISVANGIALSTDEK-VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY  242 (319)
T ss_dssp             -----EEEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred             -----eEEEeeccceeeeeeeccccc-eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEE
Confidence                 122222223456799999985 34566677899999998754321111   111 11111235679999999988


Q ss_pred             EEeccCCcEEEEecC
Q 022590          278 LSCCEDGAIWRWDAI  292 (294)
Q Consensus       278 ~s~~~dg~i~vw~~~  292 (294)
                      ++....+.|.+||-+
T Consensus       243 Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         243 VAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEETTTEEEEECTT
T ss_pred             EEEcCCCEEEEECCC
Confidence            888888999998743

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.75  E-value=1.2e-05  Score=58.75  Aligned_cols=192  Identities=13%  Similarity=0.041  Sum_probs=117.8

Q ss_pred             CceeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceec--c--cCcceEEEEeCCCCCceEEEeeC----CCcEE
Q 022590            8 EESFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFV--G--HGDSINEIRTQPLKPSLVVSASK----DESVR   79 (294)
Q Consensus         8 ~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~--h~~~v~~~~~~~~~~~~l~s~~~----dg~i~   79 (294)
                      ...+.++++.  ++|. +++ ++.+ .+.++|..+++......  .  ....++.+.+.| ++++.++...    .+.-.
T Consensus        58 ~~~~~~i~~~--~dg~-l~v-a~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~  131 (295)
T d2ghsa1          58 PFMGSALAKI--SDSK-QLI-ASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGS  131 (295)
T ss_dssp             SSCEEEEEEE--ETTE-EEE-EETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEE
T ss_pred             CCCcEEEEEe--cCCC-EEE-EEeC-ccEEeecccceeeEEeeeecCCCcccceeeEECC-CCCEEEEecccccccccee
Confidence            3456677776  7776 444 4555 58899998886543221  1  223688999999 7777665432    23456


Q ss_pred             EEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceE
Q 022590           80 LWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVF  159 (294)
Q Consensus        80 vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (294)
                      +|.+..++......    .-...+.++|++++..++++-+..+.|..+++..........               .....
T Consensus       132 l~~~~~g~~~~~~~----~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~---------------~~~~~  192 (295)
T d2ghsa1         132 IYHVAKGKVTKLFA----DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK---------------AEVFI  192 (295)
T ss_dssp             EEEEETTEEEEEEE----EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC---------------CEEEE
T ss_pred             EeeecCCcEEEEee----ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccc---------------eEEEe
Confidence            77777776555544    223468899999444566676778889999876421111000               01111


Q ss_pred             EeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEc-ccCCcceEEEEc
Q 022590          160 IASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFS-CDFHYNAAAIGN  235 (294)
Q Consensus       160 ~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~l~~~~  235 (294)
                      ...........++++  |++.++.-..+.|..||.. ++         .+..+..+...+++++|- ++.+ .++++..
T Consensus       193 ~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~---------~~~~i~lP~~~~T~~~FGG~d~~-~LyvTta  260 (295)
T d2ghsa1         193 DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GN---------HIARYEVPGKQTTCPAFIGPDAS-RLLVTSA  260 (295)
T ss_dssp             ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CC---------EEEEEECSCSBEEEEEEESTTSC-EEEEEEB
T ss_pred             ccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-Cc---------EeeEecCCCCceEEEEEeCCCCC-EEEEEEC
Confidence            122233445566665  7777776678899999974 33         577777777789999996 5554 3444433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.60  E-value=6.9e-06  Score=59.40  Aligned_cols=95  Identities=20%  Similarity=0.145  Sum_probs=61.6

Q ss_pred             cCC--CceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEee-CCC-----cEEEEEcCCCceEE
Q 022590           19 NVD--GIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSAS-KDE-----SVRLWNVQTGICIL   90 (294)
Q Consensus        19 ~~~--~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~dg-----~i~vwd~~~~~~~~   90 (294)
                      +|+  |+ .+|.. .+|.|.+.|+.+++. +.+..+.+.+...+||| |++.||... .++     .|.+++..+++...
T Consensus         7 sPdi~G~-~v~f~-~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           7 NPDIHGD-RIIFV-CCDDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             EEEEETT-EEEEE-ETTEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             CCCCCCC-EEEEE-eCCcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            477  98 55544 356799999988776 45666778889999999 778777543 222     36677776666544


Q ss_pred             Eeecc---CCCCCceeEEEEecCCCceEEee
Q 022590           91 IFAGA---GGHRNEVLSVDFHPSDIYRIASC  118 (294)
Q Consensus        91 ~~~~~---~~~~~~v~~l~~~~~~~~~l~~~  118 (294)
                      .....   ...........|+| +++.|+..
T Consensus        83 lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~  112 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDP-DGNLIIST  112 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECT-TCCEEEEE
T ss_pred             eeecCCCccCccccccccccCC-CCCEEEEE
Confidence            32210   01223456788999 77766654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.6e-05  Score=62.09  Aligned_cols=110  Identities=12%  Similarity=0.125  Sum_probs=71.2

Q ss_pred             EEeecCCCceEEEEe---------ecCCeEEEEEcCCcccccee--cccCcceEEEEeCCCCCceEEEeeCCCcEEEEEc
Q 022590           15 SWACNVDGIPFLVAG---------GINGIIRVIDVSNEKLHKSF--VGHGDSINEIRTQPLKPSLVVSASKDESVRLWNV   83 (294)
Q Consensus        15 ~~~~~~~~~~~l~~~---------~~dg~i~iw~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~   83 (294)
                      .+.++|||+ +++..         +..+.+.++|+.++......  ......+....||| +++.+|-.. ++.|.+.+.
T Consensus        65 ~~~~SpD~~-~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~nl~~~~~  141 (465)
T d1xfda1          65 RYEISPDRE-YALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENNIYYCAH  141 (465)
T ss_dssp             EEEECTTSS-EEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCS-STTCEEEEE-TTEEEEESS
T ss_pred             eeEECCCCC-eEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeecc-CCceEEEEe-cceEEEEec
Confidence            344569999 66554         34578999999887654332  23345567789999 888777665 577888888


Q ss_pred             CCCceEEEeeccCCCCCc-----------------eeEEEEecCCCceEEeeec-CCcEEEEecc
Q 022590           84 QTGICILIFAGAGGHRNE-----------------VLSVDFHPSDIYRIASCGM-DNTVKIWSMK  130 (294)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~-----------------v~~l~~~~~~~~~l~~~~~-dg~i~~wd~~  130 (294)
                      ..+..++....  +..+.                 -.++.|+| ++..||.... +..+..+.+.
T Consensus       142 ~~~~~~~lt~~--g~~~~i~nG~~d~vyeee~~~~~~a~~WSP-Dgk~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         142 VGKQAIRVVST--GKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             SSSCCEEEECC--CBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEEC
T ss_pred             CCCceEEEecc--cCcceeeccccchhhhhhhccccceEEECC-CCCeEEEEEecccccceeecc
Confidence            77766554432  11111                 25788999 7777777653 4455555543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.39  E-value=0.00014  Score=52.91  Aligned_cols=226  Identities=10%  Similarity=-0.005  Sum_probs=131.4

Q ss_pred             EEEEeecC-CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEE
Q 022590           13 TVSWACNV-DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILI   91 (294)
Q Consensus        13 ~~~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~   91 (294)
                      +..|.  + ++. +..+--..+.|.-||.++++.. .+. ....+.++++.+ ++.++++ +.+ -+..+|..+++....
T Consensus        22 gp~wd--~~~~~-l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          22 GPTFD--PASGT-AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLH   93 (295)
T ss_dssp             EEEEE--TTTTE-EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEE
T ss_pred             CCeEE--CCCCE-EEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEE
Confidence            34565  4 444 6666667789999998887642 332 346788999988 7766665 454 488899988876544


Q ss_pred             eeccCC-CCCceeEEEEecCCCceEEeeec----CCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590           92 FAGAGG-HRNEVLSVDFHPSDIYRIASCGM----DNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  166 (294)
Q Consensus        92 ~~~~~~-~~~~v~~l~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (294)
                      ...... ....++.+.+.| ++++.++...    .+.-.+|.+..+.                        .......-.
T Consensus        94 ~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~------------------------~~~~~~~~~  148 (295)
T d2ghsa1          94 AELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGK------------------------VTKLFADIS  148 (295)
T ss_dssp             ECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTE------------------------EEEEEEEES
T ss_pred             eeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCc------------------------EEEEeeccC
Confidence            332111 123578999999 7775555432    2233455444321                        111111122


Q ss_pred             ceeeccee--cc-eEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEE
Q 022590          167 YVDCNRWL--GD-FILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVW  243 (294)
Q Consensus       167 ~i~~~~~~--~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~  243 (294)
                      .-+.+.|+  ++ ++++-+..+.|..|++......... .................+++..++  ++.++.-..+.|..|
T Consensus       149 ~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~-~~~~~~~~~~~~g~pdG~~vD~~G--nlWva~~~~g~V~~~  225 (295)
T d2ghsa1         149 IPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-KAEVFIDSTGIKGGMDGSVCDAEG--HIWNARWGEGAVDRY  225 (295)
T ss_dssp             SEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-CCEEEEECTTSSSEEEEEEECTTS--CEEEEEETTTEEEEE
T ss_pred             CcceeeecCCCceEEEeecccceeeEeeeccccccccc-ceEEEeccCcccccccceEEcCCC--CEEeeeeCCCceEEe
Confidence            23455565  44 4556667888998887533211111 111222233344557788888888  566666677889999


Q ss_pred             eccCCCceeeeeccccccCCCeEEEEEc-cCCCEEEE
Q 022590          244 ELQSSPPVLIARLSHAQSKSPIRQTAMS-YDGSTILS  279 (294)
Q Consensus       244 d~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s  279 (294)
                      |.. ++......++    ...+++++|- |+.+.|+.
T Consensus       226 dp~-G~~~~~i~lP----~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         226 DTD-GNHIARYEVP----GKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             CTT-CCEEEEEECS----CSBEEEEEEESTTSCEEEE
T ss_pred             cCC-CcEeeEecCC----CCceEEEEEeCCCCCEEEE
Confidence            964 5433333332    1358999996 67665543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3e-05  Score=60.51  Aligned_cols=113  Identities=14%  Similarity=0.152  Sum_probs=69.1

Q ss_pred             EEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeee---------cCCcEEEEec
Q 022590           59 IRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCG---------MDNTVKIWSM  129 (294)
Q Consensus        59 ~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~---------~dg~i~~wd~  129 (294)
                      ..|.+ ++.++. -..+|.|.+||+.+++....+....-....+....|+| ++.+++...         ..+.+.++|+
T Consensus        22 ~~W~~-~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~i~d~   98 (465)
T d1xfda1          22 AKWIS-DTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKI   98 (465)
T ss_dssp             CCBSS-SSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEES
T ss_pred             CEEeC-CCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEEEEEc
Confidence            46888 666554 45678999999998876555543222334677889999 777666543         3567888998


Q ss_pred             cccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cceEEEeeCCCeEEEecCCCCC
Q 022590          130 KEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKE  196 (294)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~  196 (294)
                      .++...                     ++.........+....|+  |+.+|-.. ++.|.+.+...+.
T Consensus        99 ~~~~~~---------------------~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~  145 (465)
T d1xfda1          99 PHGDPQ---------------------SLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQ  145 (465)
T ss_dssp             SSCCCE---------------------ECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSC
T ss_pred             cCCcee---------------------eccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCc
Confidence            874211                     111111222334445554  66766644 5678888776554

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.20  E-value=0.00033  Score=52.95  Aligned_cols=108  Identities=14%  Similarity=0.061  Sum_probs=67.8

Q ss_pred             CCCceEEEEeecCC-----------eEEEEEcCCcccccee---cccCcceEEEEeCCCCCceEEEeeCC-CcEEEEEcC
Q 022590           20 VDGIPFLVAGGING-----------IIRVIDVSNEKLHKSF---VGHGDSINEIRTQPLKPSLVVSASKD-ESVRLWNVQ   84 (294)
Q Consensus        20 ~~~~~~l~~~~~dg-----------~i~iw~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~d-g~i~vwd~~   84 (294)
                      .+|+ +++.|+.+.           .+.+||..+++-....   ..|.......++.+ ++.+++.|+.+ ..+.+||..
T Consensus        29 ~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~  106 (387)
T d1k3ia3          29 TSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSS  106 (387)
T ss_dssp             TTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGG
T ss_pred             eCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec-CCcEEEeecCCCcceeEecCc
Confidence            5777 777777431           3778999887643321   22333345567778 88888888765 589999998


Q ss_pred             CCceEEEeeccCCCCCceeEEEEecCCCceEEeeecC------CcEEEEecccc
Q 022590           85 TGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMD------NTVKIWSMKEF  132 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~d------g~i~~wd~~~~  132 (294)
                      +..-.. ..... ....-...+..+ ++.+++.|+.+      ..+.+||..+.
T Consensus       107 ~~~w~~-~~~~~-~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         107 SDSWIP-GPDMQ-VARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             GTEEEE-CCCCS-SCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             cCcccc-ccccc-ccccccceeeec-CCceeeeccccccccccceeeeecCCCC
Confidence            766543 22211 112223455666 77888887643      35888998874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=0.0038  Score=44.21  Aligned_cols=199  Identities=8%  Similarity=-0.074  Sum_probs=112.9

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      .+.+++|.  +.++.+..+-..++.|+..+++.......+......+.+|++....+.+.++-...+.|.+.++......
T Consensus        37 ~~~~ld~D--~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~  114 (263)
T d1npea_          37 VIIGLAFD--CVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (263)
T ss_dssp             EEEEEEEE--TTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEE--eCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence            45566665  5555244444567889888887655544444334567889987745555556666789999998755543


Q ss_pred             EEeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEE--eccccccccccceeecCCCCCCCCceeeeceEEeecCCCc
Q 022590           90 LIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIW--SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNY  167 (294)
Q Consensus        90 ~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~w--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (294)
                      ..+.   ..-..+..++++|..+.++.+-...+..+++  ++...                       .........-..
T Consensus       115 ~l~~---~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-----------------------~~~~i~~~~~~~  168 (263)
T d1npea_         115 VLFD---TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-----------------------NRRILAQDNLGL  168 (263)
T ss_dssp             EEEC---SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-----------------------CCEEEECTTCSC
T ss_pred             EEec---ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC-----------------------Cceeeeeecccc
Confidence            3333   2335689999999566555554332333444  33321                       011111112234


Q ss_pred             eeeccee--cceEE-EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          168 VDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       168 i~~~~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      ...++++  ++.|. +-...+.|...|+.....         ...... ......+++.  +. .+..+-...+.|...|
T Consensus       169 P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~---------~~v~~~-~~~P~~lav~--~~-~lYwtd~~~~~I~~~~  235 (263)
T d1npea_         169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR---------RKVLEG-LQYPFAVTSY--GK-NLYYTDWKTNSVIAMD  235 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTEEEE---------EEEEEC-CCSEEEEEEE--TT-EEEEEETTTTEEEEEE
T ss_pred             cceEEEeecCcEEEEEeCCCCEEEEEECCCCCe---------EEEECC-CCCcEEEEEE--CC-EEEEEECCCCEEEEEE
Confidence            4566665  45454 445677888888865421         111122 1234566664  32 3445555678888888


Q ss_pred             ccCCC
Q 022590          245 LQSSP  249 (294)
Q Consensus       245 ~~~~~  249 (294)
                      ..+++
T Consensus       236 ~~~g~  240 (263)
T d1npea_         236 LAISK  240 (263)
T ss_dssp             TTTTE
T ss_pred             CCCCc
Confidence            88775

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.66  E-value=0.0035  Score=47.05  Aligned_cols=231  Identities=12%  Similarity=0.065  Sum_probs=127.4

Q ss_pred             CCceEEEEeecCCeEEEEEcCCccccceecc-cCcceEEEEeCCC-CCceEEEeeCCC------------------cEEE
Q 022590           21 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVG-HGDSINEIRTQPL-KPSLVVSASKDE------------------SVRL   80 (294)
Q Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~~l~s~~~dg------------------~i~v   80 (294)
                      ||+.+++.-..+++|.+-|+++.+..+.+.. ....+..++..+. +..+++.++.+.                  .+.+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            7884555556789999999999887664432 2345566665431 445666655532                  3567


Q ss_pred             EEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEeeecCCc--EEEEeccccccccccceeecCCCCCCCCceeeece
Q 022590           81 WNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNT--VKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPV  158 (294)
Q Consensus        81 wd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (294)
                      .|..+.+....+.    -.+....+.+++ ++.++++.+.+..  +.+.++....                   .....+
T Consensus       178 ID~~tm~V~~QV~----V~g~ld~~~~s~-dGK~af~TsyNSE~g~~l~e~ta~e-------------------~D~i~V  233 (459)
T d1fwxa2         178 VDADKWEVAWQVL----VSGNLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAE-------------------MDHIVV  233 (459)
T ss_dssp             EETTTTEEEEEEE----ESSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCS-------------------EEEEEE
T ss_pred             EecCCceEEEEee----eCCChhccccCC-CCCEEEEEeccccCCcchhhccccc-------------------ceEEEE
Confidence            8888888777666    344567899999 6776766654321  1111111100                   000000


Q ss_pred             EEeecCCCceeecceecceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          159 FIASVHSNYVDCNRWLGDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       159 ~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      ......    ....-+|++--.    +.+.+-|.+....      ...+..++.... ...+.++|||+ .+++++..+.
T Consensus       234 ~n~~ri----e~av~~Gk~~ei----ngV~VVD~~~~~~------~~v~~yIPVpKs-PHGV~vSPDGK-yi~VaGKLs~  297 (459)
T d1fwxa2         234 FNIAEI----EKAIAAGDYQEL----NGVKVVDGRKEAS------SLFTRYIPIANN-PHGCNMAPDKK-HLCVAGKLSP  297 (459)
T ss_dssp             EEHHHH----HHHHHHTCSEEE----TTEEEEECSGG--------CSSEEEEEEESS-CCCEEECTTSS-EEEEECTTSS
T ss_pred             echHHh----HHhhhcCCcEEe----CCceeecccccCC------cceeEEEecCCC-CCceEECCCCC-EEEEeCCcCC
Confidence            000000    000001222111    2356667664321      112333333322 45689999997 4677788899


Q ss_pred             eEEEEeccCCCc--------eeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          239 KIFVWELQSSPP--------VLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       239 ~i~i~d~~~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      .+.++|+++-..        ...... .....-.-..-+|+..|.-..|---|..|--|++.
T Consensus       298 tVSViD~~Ki~~~~~~~~~~~~~~~~-e~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         298 TVTVLDVTRFDAVFYENADPRSAVVA-EPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             BEEEEEGGGHHHHHHSCC-GGGGEEE-CCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cEEEEEehhhhhhhcccCCccccEEe-ecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            999999974211        111001 11122335667898888666666789999999974

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.60  E-value=0.0051  Score=43.70  Aligned_cols=232  Identities=10%  Similarity=0.122  Sum_probs=132.9

Q ss_pred             cCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCC-ceEEEeeccCC
Q 022590           19 NVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTG-ICILIFAGAGG   97 (294)
Q Consensus        19 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~   97 (294)
                      +|..+ .||.-+ ..++.++|+++.+.++.+.- ..+|.-=.|-.  .+.|+-.+. ..|.-|+++.. .+.+.+.....
T Consensus        71 hP~~~-IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~  144 (327)
T d1utca2          71 NPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVTD-NAVYHWSMEGESQPVKMFDRHSS  144 (327)
T ss_dssp             CSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESS--SSEEEEECS-SEEEEEESSSSCCCEEEEECCGG
T ss_pred             CCCCc-EEEEec-CCeEEEEehhHhhhhceEEc-CCCcEEEEecC--CCEEEEEcC-CceEEEcccCCCCchhhhhhccc
Confidence            57776 666655 56899999999988888874 45677777765  345555544 56999999543 45555553100


Q ss_pred             -CCCceeEEEEecCCCceEEeee-------cCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCcee
Q 022590           98 -HRNEVLSVDFHPSDIYRIASCG-------MDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVD  169 (294)
Q Consensus        98 -~~~~v~~l~~~~~~~~~l~~~~-------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (294)
                       ....|..-..++ +.+.++..+       -.|.+.+|..+...                        -..+.+|.....
T Consensus       145 L~~~QIInY~~d~-~~kW~~l~GI~~~~~~i~G~mQLYS~er~~------------------------sQ~ieGhaa~F~  199 (327)
T d1utca2         145 LAGCQIINYRTDA-KQKWLLLTGISAQQNRVVGAMQLYSVDRKV------------------------SQPIEGHAASFA  199 (327)
T ss_dssp             GTTCEEEEEEECT-TSCEEEEEEEEEETTEEEEEEEEEETTTTE------------------------EEEECCSEEEEE
T ss_pred             ccCceEEEEEECC-CCCEEEEEeEecCCCceeEEEEEEEeccCc------------------------CccccceeeeeE
Confidence             124566667777 444444332       34678888887621                        233444444333


Q ss_pred             ecceecc-----eEEEe---eCCCeEEEecCCCCCCCCCCCCceeeee-eec--CCCCeeEEEEcccCCcceEEEEcCCC
Q 022590          170 CNRWLGD-----FILSK---SVDNEIVLWEPKMKEQSPGEGTADILQK-YPV--PECDIWFIKFSCDFHYNAAAIGNREG  238 (294)
Q Consensus       170 ~~~~~~~-----~l~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~--~~~~i~~~~~~~~~~~~~l~~~~~dg  238 (294)
                      .+...|+     .|+.+   ...+++++.++............+...- ++.  ...-.-++..++.-  ..++.-+.-|
T Consensus       200 ~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky--giiyviTK~G  277 (327)
T d1utca2         200 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH--DVVFLITKYG  277 (327)
T ss_dssp             EECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT--TEEEEEETTS
T ss_pred             EEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccC--CEEEEEecCc
Confidence            3333211     22211   2346889998876432111111111111 111  12333445555544  6888889999


Q ss_pred             eEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEE
Q 022590          239 KIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIW  287 (294)
Q Consensus       239 ~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  287 (294)
                      .+++||++++......++.    ..+|-..+-.....=+++...+|.|.
T Consensus       278 ~i~lyDleTgt~i~~nRIs----~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         278 YIHLYDLETGTCIYMNRIS----GETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEETTTCCEEEEEECC----SSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEEEcccccEEEEeecC----CCceEEeccCCCCceEEEECCCCeEE
Confidence            9999999999877666654    23454444444444455555777654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.53  E-value=0.0064  Score=43.11  Aligned_cols=63  Identities=11%  Similarity=0.087  Sum_probs=39.3

Q ss_pred             ccCceeEEEEEeecCCCceEEEEee-cC-----CeEEEEEcCCccccceec------ccCcceEEEEeCCCCCceEEEe
Q 022590            6 QKEESFYTVSWACNVDGIPFLVAGG-IN-----GIIRVIDVSNEKLHKSFV------GHGDSINEIRTQPLKPSLVVSA   72 (294)
Q Consensus         6 ~h~~~v~~~~~~~~~~~~~~l~~~~-~d-----g~i~iw~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l~s~   72 (294)
                      .+.+.+...+|+  |||+ .||... .+     ..|.+++..+++..+...      ..........|+| +++.|+..
T Consensus        38 ~~~~~~~~p~~S--PDG~-~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~~  112 (281)
T d1k32a2          38 SNLGVINNARFF--PDGR-KIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIIST  112 (281)
T ss_dssp             CSSSEEEEEEEC--TTSS-EEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECT-TCCEEEEE
T ss_pred             cCCCcccCEEEC--CCCC-EEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCC-CCCEEEEE
Confidence            345667777887  9999 666443 22     247777877776543221      1123456788999 77777654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=0.0085  Score=42.35  Aligned_cols=218  Identities=5%  Similarity=-0.132  Sum_probs=118.6

Q ss_pred             CeEEEEEcCCcccc-----ceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEE
Q 022590           33 GIIRVIDVSNEKLH-----KSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDF  107 (294)
Q Consensus        33 g~i~iw~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~  107 (294)
                      +.|+-.+++.....     ..+..+...+..|+|.+.++.++.+-..++.|...++..+.....+.   .-...+.+|++
T Consensus        10 ~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~---~~~~~p~~iAv   86 (263)
T d1npea_          10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR---QDLGSPEGIAL   86 (263)
T ss_dssp             EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC---TTCCCEEEEEE
T ss_pred             CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEE---eccccccEEEE
Confidence            47777777544322     12344555688899998444455554567889888887655544443   23356889999


Q ss_pred             ecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee--cc-eEEEeeC-
Q 022590          108 HPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL--GD-FILSKSV-  183 (294)
Q Consensus       108 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~l~~~~~-  183 (294)
                      ....+++..+-...+.|.+.++.....                       .............++.+  .. ++.+-.. 
T Consensus        87 D~~~~~lY~~d~~~~~I~~~~~dg~~~-----------------------~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~  143 (263)
T d1npea_          87 DHLGRTIFWTDSQLDRIEVAKMDGTQR-----------------------RVLFDTGLVNPRGIVTDPVRGNLYWTDWNR  143 (263)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC-----------------------EEEECSSCSSEEEEEEETTTTEEEEEECCS
T ss_pred             eccCCeEEEeccCCCEEEEEecCCceE-----------------------EEEecccccCCcEEEEecccCcEEEeecCC
Confidence            874556556666678899998876211                       11111122334455554  33 3333222 


Q ss_pred             -CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccC
Q 022590          184 -DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSK  262 (294)
Q Consensus       184 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  262 (294)
                       ...|.--++.....         .......-.....+++.+..+ .+..+-...+.|...++.......+.  .  +..
T Consensus       144 ~~~~I~r~~~dG~~~---------~~i~~~~~~~P~glaiD~~~~-~lYw~d~~~~~I~~~~~~g~~~~~v~--~--~~~  209 (263)
T d1npea_         144 DNPKIETSHMDGTNR---------RILAQDNLGLPNGLTFDAFSS-QLCWVDAGTHRAECLNPAQPGRRKVL--E--GLQ  209 (263)
T ss_dssp             SSCEEEEEETTSCCC---------EEEECTTCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTEEEEEEEE--E--CCC
T ss_pred             CCcEEEEecCCCCCc---------eeeeeecccccceEEEeecCc-EEEEEeCCCCEEEEEECCCCCeEEEE--C--CCC
Confidence             22344344433221         111122234567888987764 34344556788999998765432222  1  111


Q ss_pred             CCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          263 SPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       263 ~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                      . ..+|++. ++.+..+-...+.|...|..
T Consensus       210 ~-P~~lav~-~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         210 Y-PFAVTSY-GKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             S-EEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             C-cEEEEEE-CCEEEEEECCCCEEEEEECC
Confidence            2 3567775 33333444456667666654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.011  Score=41.84  Aligned_cols=228  Identities=7%  Similarity=-0.098  Sum_probs=121.5

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCc---eEEEeeccCCCCCc
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGI---CILIFAGAGGHRNE  101 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~  101 (294)
                      +|+.+... .|+-.++++.+....+. ....+.+++|.+..+.+..+=..++.|.-.++....   ....+..  .....
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~--~~~~~   78 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--RDIQA   78 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--SSCSC
T ss_pred             EEEEECCC-eEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe--CCCCC
Confidence            34444433 58888987765443333 455678999998444444444456667666664321   1111211  23345


Q ss_pred             eeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee---cceE
Q 022590          102 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL---GDFI  178 (294)
Q Consensus       102 v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l  178 (294)
                      +..|++.+..+++..+-...+.|.+.++....                       ..............++.+   +.++
T Consensus        79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~-----------------------~~~~~~~~~~~P~~l~vd~~~g~ly  135 (266)
T d1ijqa1          79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-----------------------RKTLFRENGSKPRAIVVDPVHGFMY  135 (266)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-----------------------EEEEEECTTCCEEEEEEETTTTEEE
T ss_pred             cceEEEeeccceEEEEecCCCEEEeEecCCce-----------------------EEEEEcCCCCCcceEEEEcccCeEE
Confidence            77888887566666666677889999988621                       111122222334455544   2233


Q ss_pred             EEe-eCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc
Q 022590          179 LSK-SVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS  257 (294)
Q Consensus       179 ~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~  257 (294)
                      .+- +..+.|.-.++....         ........-.....+++.+..+ .+..+-...+.|...++............
T Consensus       136 ~~~~~~~~~I~r~~~dGs~---------~~~l~~~~~~~p~gl~iD~~~~-~lYw~d~~~~~I~~~~~dG~~~~~~~~~~  205 (266)
T d1ijqa1         136 WTDWGTPAKIKKGGLNGVD---------IYSLVTENIQWPNGITLDLLSG-RLYWVDSKLHSISSIDVNGGNRKTILEDE  205 (266)
T ss_dssp             EEECSSSCEEEEEETTSCC---------EEEEECSSCSCEEEEEEETTTT-EEEEEETTTTEEEEEETTSCSCEEEEECT
T ss_pred             EeccCCCcceeEeccCCCc---------eecccccccceeeEEEeecccc-EEEEecCCcCEEEEEECCCCCEEEEEeCC
Confidence            332 233456666654322         1111122234567888988774 34455566789999999766533333222


Q ss_pred             ccccCCCeEEEEEccCCCEEEEeccCCcEEEEecC
Q 022590          258 HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAI  292 (294)
Q Consensus       258 ~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~  292 (294)
                        .......++++. ++.+..+-..++.|+..+..
T Consensus       206 --~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~  237 (266)
T d1ijqa1         206 --KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL  237 (266)
T ss_dssp             --TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             --CcccccEEEEEE-CCEEEEEECCCCeEEEEECC
Confidence              222335567776 33344444466777666543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.30  E-value=0.013  Score=41.54  Aligned_cols=219  Identities=16%  Similarity=0.203  Sum_probs=125.7

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCC
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  112 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  112 (294)
                      .+|.|.|+.+.....+-.-   .--+.-.+| ..+.||.-+ ..++.++|+++.+.++.+.    ...+|.--.|-  +.
T Consensus        45 ~~VvIidl~n~~~~~Rrpi---~AdsAIMhP-~~~IiALra-g~~LQiFnletK~klks~~----~~e~VvfWkWi--s~  113 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPI---SADSAIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHT----MTDDVTFWKWI--SL  113 (327)
T ss_dssp             EEEEEEETTSTTSCEEEEC---CCSEEEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEE----CSSCCCEEEES--SS
T ss_pred             ceEEEEECCCCCcceeccc---chhhhhcCC-CCcEEEEec-CCeEEEEehhHhhhhceEE----cCCCcEEEEec--CC
Confidence            4788888876543222111   112333567 666766655 5689999999999999887    66788888887  44


Q ss_pred             ceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC----ceeeccee--cceEEEee----
Q 022590          113 YRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN----YVDCNRWL--GDFILSKS----  182 (294)
Q Consensus       113 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~--~~~l~~~~----  182 (294)
                      +.|+-.+ +..|+-|++....                      .|...+..|..    .|.....+  .++++..+    
T Consensus       114 ~~L~lVT-~taVYHW~~~g~s----------------------~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~  170 (327)
T d1utca2         114 NTVALVT-DNAVYHWSMEGES----------------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQ  170 (327)
T ss_dssp             SEEEEEC-SSEEEEEESSSSC----------------------CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CEEEEEc-CCceEEEcccCCC----------------------CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecC
Confidence            5566555 4589999996421                      12222332321    12211112  44444322    


Q ss_pred             ---CCCeEEEecCCCCCCCCCCCCceeeeeeecCCCC--eeEEEEcccCCcceEEEEcCCCeEEEEeccCCC---cee-e
Q 022590          183 ---VDNEIVLWEPKMKEQSPGEGTADILQKYPVPECD--IWFIKFSCDFHYNAAAIGNREGKIFVWELQSSP---PVL-I  253 (294)
Q Consensus       183 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~-~  253 (294)
                         -.|.+.+|..+.......+++......+..+...  ..-++|...        +...+.+++.++....   +.. .
T Consensus       171 ~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r--------~~~~~kLhIiEig~~~~g~~~f~k  242 (327)
T d1utca2         171 QNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVR--------GQAGGKLHIIEVGTPPTGNQPFPK  242 (327)
T ss_dssp             TTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEE--------ETTEEEEEEEECSCCCTTCCCCCC
T ss_pred             CCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEEC--------CCCCcEEEEEEcCCCccCCCCCcc
Confidence               1367899998876443333333344443332221  112222211        2334789999986632   111 1


Q ss_pred             ----eeccccccCCCeEEEEEccCCCEEEEeccCCcEEEEecCC
Q 022590          254 ----ARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWDAIP  293 (294)
Q Consensus       254 ----~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~~~~  293 (294)
                          ..++......--.++..++.-..+..-+.-|.|++||+++
T Consensus       243 k~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleT  286 (327)
T d1utca2         243 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET  286 (327)
T ss_dssp             EEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred             eeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEccc
Confidence                1111222234456788998888899999999999999986

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.05  E-value=0.033  Score=41.47  Aligned_cols=67  Identities=10%  Similarity=0.114  Sum_probs=43.1

Q ss_pred             cCCCceEEEEeecC-CeEEEEEcCCccccc--eecccCcceEEEEeCCCCCceEEEeeCC------CcEEEEEcCCCce
Q 022590           19 NVDGIPFLVAGGIN-GIIRVIDVSNEKLHK--SFVGHGDSINEIRTQPLKPSLVVSASKD------ESVRLWNVQTGIC   88 (294)
Q Consensus        19 ~~~~~~~l~~~~~d-g~i~iw~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~l~s~~~d------g~i~vwd~~~~~~   88 (294)
                      .++|+ +++.|+.+ ..+.+||..+..-..  .+... ..-...+..+ ++++++.|+.+      ..+.+||..+.+-
T Consensus        84 ~~~g~-i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          84 DGNGQ-IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             CTTSC-EEEECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ecCCc-EEEeecCCCcceeEecCccCccccccccccc-ccccceeeec-CCceeeeccccccccccceeeeecCCCCce
Confidence            38898 77777655 589999987764322  12211 1223455666 77888887643      3588999877653

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.85  E-value=0.074  Score=42.14  Aligned_cols=80  Identities=11%  Similarity=0.157  Sum_probs=48.9

Q ss_pred             CeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCC
Q 022590          185 NEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSP  264 (294)
Q Consensus       185 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  264 (294)
                      |.+.-||+.+++.         +-..+... +...=.++-.+  .++++|+.||.++.+|.++++.+....+.......+
T Consensus       457 G~l~AiD~~tGk~---------~W~~~~~~-p~~gg~lstag--glVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P  524 (573)
T d1kb0a2         457 GRLLAWDPVAQKA---------AWSVEHVS-PWNGGTLTTAG--NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP  524 (573)
T ss_dssp             EEEEEEETTTTEE---------EEEEEESS-SCCCCEEEETT--TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             ccEEEeCCCCCce---------EeeecCCC-CCCCceEEEcC--CEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC
Confidence            5677788877653         22222211 11111223334  478889999999999999999887777765445455


Q ss_pred             eEEEEEccCCC-EEEE
Q 022590          265 IRQTAMSYDGS-TILS  279 (294)
Q Consensus       265 v~~~~~s~~~~-~l~s  279 (294)
                      +   .|..+|+ |++.
T Consensus       525 ~---ty~~~GkQYv~v  537 (573)
T d1kb0a2         525 S---TYMVDGRQYVSV  537 (573)
T ss_dssp             E---EEEETTEEEEEE
T ss_pred             E---EEEECCEEEEEE
Confidence            4   4455775 4443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.70  E-value=0.1  Score=41.56  Aligned_cols=70  Identities=10%  Similarity=0.170  Sum_probs=45.4

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccCcce-EEEEeCCC-CCceEEEeeC------CCcEEEEEcCCCceEEEeec
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHGDSI-NEIRTQPL-KPSLVVSASK------DESVRLWNVQTGICILIFAG   94 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v-~~~~~~~~-~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~   94 (294)
                      +++.++.|+.|.-.|.++++.+..+....... ..+.-.|. -+..++.+..      .|.|+-+|..+|+.+-.+..
T Consensus       123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t  200 (596)
T d1w6sa_         123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA  200 (596)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             EEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence            58889999999999999999887764211100 01111110 1234555533      48899999999999987753

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.085  Score=39.13  Aligned_cols=153  Identities=8%  Similarity=-0.005  Sum_probs=90.5

Q ss_pred             CceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeecceecceEE
Q 022590          100 NEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWLGDFIL  179 (294)
Q Consensus       100 ~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~  179 (294)
                      ....-++.++ ...++++|+.+ .+.|..+...........    ....      ..+..    .-..|..++|+++.++
T Consensus        37 ~~~~LLAVsn-~~GLl~aa~~~-~l~V~~t~~l~~~~~~~~----~~~~------~~~~~----~ip~v~~vafs~d~l~  100 (381)
T d1xipa_          37 ASLQNLDISN-SKSLFVAASGS-KAVVGELQLLRDHITSDS----TPLT------FKWEK----EIPDVIFVCFHGDQVL  100 (381)
T ss_dssp             SCCBCEEEET-TTTEEEEEETT-EEEEEEHHHHHHHHHSSS----CCCC------CSEEE----ECTTEEEEEEETTEEE
T ss_pred             cccceEEEeC-CCCEEEEECCC-EEEEEEHHHHHHHhhccC----CCCc------ceecc----CCCCeEEEEeeCCEEE
Confidence            3466788887 55667777766 477877665322221110    0000      00111    1125788899988777


Q ss_pred             EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeecc-c
Q 022590          180 SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLS-H  258 (294)
Q Consensus       180 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~  258 (294)
                      .. .++.+..++.....         ..........++..+.+.|.    .++....+|.+.++++...+......-. .
T Consensus       101 v~-~~~~l~~~~~~~l~---------~~~~~~~~~~~~~~~~~~p~----~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~  166 (381)
T d1xipa_         101 VS-TRNALYSLDLEELS---------EFRTVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQLAQNVTS  166 (381)
T ss_dssp             EE-ESSEEEEEESSSTT---------CEEEEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEEEEESEEE
T ss_pred             EE-eCCCEEEEEeeccc---------cccccccccccccceecCCc----eeEEEecCCCEEEEEeccCccccccCCcce
Confidence            65 45667878776543         12233333456777777765    3556667899999999887643322110 0


Q ss_pred             cccCCCeEEEEEccCCCEEEEecc
Q 022590          259 AQSKSPIRQTAMSYDGSTILSCCE  282 (294)
Q Consensus       259 ~~~~~~v~~~~~s~~~~~l~s~~~  282 (294)
                      ..-.+.+.+++|++.|..++++..
T Consensus       167 ~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         167 FDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             EEECSSEEEEEETTSCEEEEEEET
T ss_pred             EEecCCceEEEEeCCcEEEEEeCC
Confidence            112356899999999998888743

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.37  E-value=0.11  Score=38.10  Aligned_cols=204  Identities=10%  Similarity=0.044  Sum_probs=112.5

Q ss_pred             CCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCC----C-CCceEEEee-C-C--CcEEEEEcCC-CceE
Q 022590           20 VDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQP----L-KPSLVVSAS-K-D--ESVRLWNVQT-GICI   89 (294)
Q Consensus        20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~----~-~~~~l~s~~-~-d--g~i~vwd~~~-~~~~   89 (294)
                      |+.. +++....++-|++||++ |+.++.+.  .+.++.+..-.    . ...-++.++ . +  .+|.+|.+.. ...+
T Consensus        38 p~~S-lI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l  113 (353)
T d1h6la_          38 PQNS-KLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL  113 (353)
T ss_dssp             GGGC-EEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred             cCcc-EEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence            3444 77777777779999985 77776664  24555544321    0 222344444 2 2  3577887752 3333


Q ss_pred             EEeeccC----CCCCceeEEEE--ecCCCc-eEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEee
Q 022590           90 LIFAGAG----GHRNEVLSVDF--HPSDIY-RIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIAS  162 (294)
Q Consensus        90 ~~~~~~~----~~~~~v~~l~~--~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (294)
                      ..+....    .-...++.+|+  +|.++. ++++...+|.+..|.+.......                .....+..+.
T Consensus       114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~----------------v~~~lvr~f~  177 (353)
T d1h6la_         114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGY----------------ISGKKVRAFK  177 (353)
T ss_dssp             EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSS----------------EEEEEEEEEE
T ss_pred             ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCc----------------eeeEeeeccC
Confidence            3332110    01224677777  554443 56677788999999875421100                0011222222


Q ss_pred             cCCCceeeccee--cceEEEeeCCCeEEEecCCCCCCCCCCCCceeeeeeec--CCCCeeEEEEcc--cCCcceEEEEcC
Q 022590          163 VHSNYVDCNRWL--GDFILSKSVDNEIVLWEPKMKEQSPGEGTADILQKYPV--PECDIWFIKFSC--DFHYNAAAIGNR  236 (294)
Q Consensus       163 ~~~~~i~~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~--~~~~~~l~~~~~  236 (294)
                       -...+..+.++  .+.|+.+-.+..|..++.......    ....+.....  -...+..+++-.  ++.+.+|++.-.
T Consensus       178 -~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~----~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG  252 (353)
T d1h6la_         178 -MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGS----NGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQG  252 (353)
T ss_dssp             -CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCS----CCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             -CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCc----cceeeecccCccccCCccccEEEEcCCCCeEEEEEcCC
Confidence             34567777787  468888888777766665422110    1112222111  235666776543  445456777777


Q ss_pred             CCeEEEEeccCC
Q 022590          237 EGKIFVWELQSS  248 (294)
Q Consensus       237 dg~i~i~d~~~~  248 (294)
                      +++..+||....
T Consensus       253 ~n~f~vydr~~~  264 (353)
T d1h6la_         253 NSSYAIYERQGQ  264 (353)
T ss_dssp             GTEEEEEESSTT
T ss_pred             CCeEEEEecCCC
Confidence            899999999774

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.32  E-value=0.17  Score=39.94  Aligned_cols=48  Identities=15%  Similarity=0.185  Sum_probs=35.6

Q ss_pred             ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEE
Q 022590          229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILS  279 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s  279 (294)
                      .++++|+.||.++-+|.++++.+....+.......++   .|..+|+ |+++
T Consensus       476 glVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~---ty~~dGkqYi~v  524 (571)
T d2ad6a1         476 GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPM---TYSFKGKQYIGS  524 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE---EEEETTEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEECCCCceecce---EEEECCEEEEEE
Confidence            4777899999999999999998877777655444554   4555775 5544

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.27  E-value=0.14  Score=38.38  Aligned_cols=28  Identities=7%  Similarity=0.008  Sum_probs=23.0

Q ss_pred             eEEEeeCCCcEEEEEcCCCceEEEeecc
Q 022590           68 LVVSASKDESVRLWNVQTGICILIFAGA   95 (294)
Q Consensus        68 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~   95 (294)
                      .+.||+..|.|+|+-+.+++.+..+..+
T Consensus        15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF   42 (459)
T d1fwxa2          15 GFWSSGQSGEMRILGIPSMRELMRVPVF   42 (459)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESS
T ss_pred             EEeeCCccceEEEEecCCcceEEEeeee
Confidence            4678899999999999998888776543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.1  Score=36.63  Aligned_cols=203  Identities=6%  Similarity=-0.039  Sum_probs=108.3

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCcc----ccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCC
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEK----LHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQT   85 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~   85 (294)
                      .+.+++|.  +.++.+..+-...+.|.-.+++...    ....+......+..|++.+..+++..+-...+.|.+.++..
T Consensus        31 ~~~~id~d--~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          31 NVVALDTE--VASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             SEEEEEEE--TTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEEEE--eCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            34456655  5555233343455667666654321    11122223345677888774566666666778899999976


Q ss_pred             CceEEEeeccCCCCCceeEEEEecCCCceEEee-ecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecC
Q 022590           86 GICILIFAGAGGHRNEVLSVDFHPSDIYRIASC-GMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVH  164 (294)
Q Consensus        86 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (294)
                      ........   ........|+++|..+.++.+- +..+.|.-.++....                       ........
T Consensus       109 ~~~~~~~~---~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~-----------------------~~~l~~~~  162 (266)
T d1ijqa1         109 VKRKTLFR---ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----------------------IYSLVTEN  162 (266)
T ss_dssp             SSEEEEEE---CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-----------------------EEEEECSS
T ss_pred             ceEEEEEc---CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-----------------------eecccccc
Confidence            65544444   3456789999999555555553 233455555554311                       11111122


Q ss_pred             CCceeeccee--cceEE-EeeCCCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEE
Q 022590          165 SNYVDCNRWL--GDFIL-SKSVDNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIF  241 (294)
Q Consensus       165 ~~~i~~~~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~  241 (294)
                      -.....++++  ++.|. +-...+.|...|+.....       ..+............+++..+   .+..+-..++.|.
T Consensus       163 ~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-------~~~~~~~~~~~~p~~lav~~~---~ly~td~~~~~I~  232 (266)
T d1ijqa1         163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-------KTILEDEKRLAHPFSLAVFED---KVFWTDIINEAIF  232 (266)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-------EEEEECTTTTSSEEEEEEETT---EEEEEETTTTEEE
T ss_pred             cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-------EEEEeCCCcccccEEEEEECC---EEEEEECCCCeEE
Confidence            2344566665  44444 445567888888865431       122222222233455665532   3445555677888


Q ss_pred             EEeccCCCc
Q 022590          242 VWELQSSPP  250 (294)
Q Consensus       242 i~d~~~~~~  250 (294)
                      ..+..+++.
T Consensus       233 ~~~~~~g~~  241 (266)
T d1ijqa1         233 SANRLTGSD  241 (266)
T ss_dssp             EEETTTCCC
T ss_pred             EEECCCCcc
Confidence            888776653

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.23  E-value=0.2  Score=39.63  Aligned_cols=68  Identities=15%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             EEEEeecCCeEEEEEcCCccccceecccC----cceEEEEeCCCCCceEEEee------CCCcEEEEEcCCCceEEEeec
Q 022590           25 FLVAGGINGIIRVIDVSNEKLHKSFVGHG----DSINEIRTQPLKPSLVVSAS------KDESVRLWNVQTGICILIFAG   94 (294)
Q Consensus        25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~   94 (294)
                      .++.++.||.+.-.|.++++.........    ..++.--... ++. ++.+.      .+|.|+-+|..+|+.+..+..
T Consensus       117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDT-VLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTE-EEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             eEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCe-EEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            57788899999999999998765543211    1111111111 333 34443      368899999999999887653

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.22  E-value=0.2  Score=39.70  Aligned_cols=81  Identities=11%  Similarity=0.105  Sum_probs=52.0

Q ss_pred             CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCC
Q 022590          184 DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKS  263 (294)
Q Consensus       184 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  263 (294)
                      .|.|.-+|+.+++.         .-+.+.+. ++..-.++..+  .++++|+.||.++-+|.++++.+....+....+..
T Consensus       465 ~G~l~AiD~~TG~i---------~W~~~~~~-p~~~g~lstag--glVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~  532 (582)
T d1flga_         465 VGSLRAMDPVSGKV---------VWEHKEHL-PLWAGVLATAG--NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSP  532 (582)
T ss_dssp             SEEEEEECTTTCCE---------EEEEEESS-CCCSCCEEETT--TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             CCeEEEEcCCCCcE---------EeecCCCC-CCccceeEEcC--CeEEEeCCCCeEEEEECCCCcEeEEEECCCCcccc
Confidence            46788888888763         22222221 11111233344  47778999999999999999988888877555555


Q ss_pred             CeEEEEEccCCC-EEEE
Q 022590          264 PIRQTAMSYDGS-TILS  279 (294)
Q Consensus       264 ~v~~~~~s~~~~-~l~s  279 (294)
                      +   +.+..+|+ |++.
T Consensus       533 P---~ty~~~G~qYv~i  546 (582)
T d1flga_         533 P---ITWEQDGEQYLGV  546 (582)
T ss_dssp             C---EEEEETTEEEEEE
T ss_pred             C---EEEEECCEEEEEE
Confidence            5   45667884 5554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.53  E-value=0.33  Score=36.70  Aligned_cols=104  Identities=12%  Similarity=0.021  Sum_probs=59.1

Q ss_pred             eeEEEEEeecCCCceEEEEeecCC----eEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCC----------
Q 022590           10 SFYTVSWACNVDGIPFLVAGGING----IIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKD----------   75 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----------   75 (294)
                      .+.-..++++|+++.++++-+.+|    .|+++|+.+++.+...- .......++|.+ +++.|+-...+          
T Consensus       124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred             cceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence            444456777899994444444444    69999999998654221 112235688999 66655443222          


Q ss_pred             ------CcEEEEEcCCCce--EEEeeccCCCCCceeEEEEecCCCceEEe
Q 022590           76 ------ESVRLWNVQTGIC--ILIFAGAGGHRNEVLSVDFHPSDIYRIAS  117 (294)
Q Consensus        76 ------g~i~vwd~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~~l~~  117 (294)
                            ..|..+.+.+...  ...+.. ......+..+..++ ++.+++.
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e-~d~~~~~~~~~~s~-d~~~l~i  249 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSD-DGRYVLL  249 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECT-TSCEEEE
T ss_pred             cccCCcceEEEEECCCCcccccccccc-ccCCceEEeeeccC-CcceeeE
Confidence                  2577777766533  233331 01223456677777 6665543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.02  E-value=0.07  Score=42.39  Aligned_cols=81  Identities=14%  Similarity=0.174  Sum_probs=53.4

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCC
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  112 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  112 (294)
                      |.|.-+|+.+++.+-....+ .++..-..+. .+.++++|+.||.++-+|.++|+.+..+....+.....  +.|..++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCC-CCCccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            67888888888887766543 2222211222 45688889999999999999999999988643333322  55555244


Q ss_pred             ceEEe
Q 022590          113 YRIAS  117 (294)
Q Consensus       113 ~~l~~  117 (294)
                      ++++.
T Consensus       542 qYv~i  546 (582)
T d1flga_         542 QYLGV  546 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.92  E-value=0.63  Score=36.53  Aligned_cols=61  Identities=15%  Similarity=0.079  Sum_probs=38.5

Q ss_pred             CeEEEEEcCCccccceecccCcce-----------EEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEee
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSI-----------NEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFA   93 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v-----------~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~   93 (294)
                      ..|.-.|.++++....++.....+           ..+.........++.+..+|.+.++|..+++.+....
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~  341 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEK  341 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccc
Confidence            356677888888765554322211           2222222112467788999999999999999876554

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.79  E-value=0.48  Score=34.57  Aligned_cols=75  Identities=20%  Similarity=0.296  Sum_probs=50.0

Q ss_pred             CeeEEEE--cccCCcceEEEEcCCCeEEEEeccCCC-----ceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcEEE
Q 022590          216 DIWFIKF--SCDFHYNAAAIGNREGKIFVWELQSSP-----PVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAIWR  288 (294)
Q Consensus       216 ~i~~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~v  288 (294)
                      .++.+++  ++.....++++...+|.+..|.+....     ...+..+   .....+..+.+.++.+.|..+-++.-|..
T Consensus       129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f---~~~~q~EGCVvDde~~~LyisEE~~Giw~  205 (353)
T d1h6la_         129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF---KMNSQTEGMAADDEYGSLYIAEEDEAIWK  205 (353)
T ss_dssp             SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE---ECSSCEEEEEEETTTTEEEEEETTTEEEE
T ss_pred             cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc---CCCCccceEEEeCCCCcEEEecCccceEE
Confidence            4667777  454332467778889999999874322     1122223   23367899999999999999988776665


Q ss_pred             EecCC
Q 022590          289 WDAIP  293 (294)
Q Consensus       289 w~~~~  293 (294)
                      ++.++
T Consensus       206 ~~a~~  210 (353)
T d1h6la_         206 FSAEP  210 (353)
T ss_dssp             EESST
T ss_pred             EEecc
Confidence            55543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.44  E-value=0.097  Score=41.45  Aligned_cols=80  Identities=14%  Similarity=0.092  Sum_probs=53.3

Q ss_pred             CeEEEEEcCCccccceecccCcceE--EEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecC
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSIN--EIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPS  110 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~  110 (294)
                      |.+.-||+.+++.+-+.+... +..  .++.   .+.++++|+.||.++.+|.++|+.+..+....+..+..  +.|..+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lst---agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~  530 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTT---AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVD  530 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEET
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEE---cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEEC
Confidence            578889999998887765332 211  2222   45688889999999999999999999988644333332  444442


Q ss_pred             CCceEEee
Q 022590          111 DIYRIASC  118 (294)
Q Consensus       111 ~~~~l~~~  118 (294)
                      +.++++..
T Consensus       531 GkQYv~v~  538 (573)
T d1kb0a2         531 GRQYVSVA  538 (573)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            44454443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.54  Score=32.88  Aligned_cols=60  Identities=13%  Similarity=0.208  Sum_probs=30.8

Q ss_pred             eEEEEcCC-----CeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCCEEEEeccCCc-----EEEEecCC
Q 022590          230 AAAIGNRE-----GKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGA-----IWRWDAIP  293 (294)
Q Consensus       230 ~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-----i~vw~~~~  293 (294)
                      +++.|+.+     .....+|..+.+........  ...... +++ ..++++++.|+.++.     +.+||+++
T Consensus       198 i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~  267 (288)
T d1zgka1         198 IYAAGGYDGQDQLNSVERYDVETETWTFVAPMK--HRRSAL-GIT-VHQGRIYVLGGYDGHTFLDSVECYDPDT  267 (288)
T ss_dssp             EEEECCBCSSSBCCCEEEEETTTTEEEECCCCS--SCCBSC-EEE-EETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             EEEecCccccccccceeeeeecceeeecccCcc--Ccccce-EEE-EECCEEEEEecCCCCeecceEEEEECCC
Confidence            45555433     34667777766433322221  111111 222 236788888876543     77888764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.13  E-value=0.13  Score=40.53  Aligned_cols=83  Identities=13%  Similarity=0.113  Sum_probs=53.3

Q ss_pred             CeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCC
Q 022590           33 GIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDI  112 (294)
Q Consensus        33 g~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~  112 (294)
                      |.|.-+|+.+++.+-.+... .+...-...- .+.++++|+.||.++-+|.++|+.+..+....+.....  +.|..++.
T Consensus       438 G~l~A~D~~tGk~~W~~~~~-~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P--~ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYP-THWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAP--MTFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTE
T ss_pred             cceEEEeCCCCeEeeeccCC-CCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccC--EEEEECCE
Confidence            56888898888877665422 2222111222 45688889999999999999999999988644433333  44444244


Q ss_pred             ceEEeee
Q 022590          113 YRIASCG  119 (294)
Q Consensus       113 ~~l~~~~  119 (294)
                      +++++..
T Consensus       514 qyv~v~a  520 (560)
T d1kv9a2         514 QYVAIMA  520 (560)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            5555443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.58  E-value=0.95  Score=33.37  Aligned_cols=100  Identities=8%  Similarity=0.090  Sum_probs=63.6

Q ss_pred             eeEEEEEeecCCCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceE
Q 022590           10 SFYTVSWACNVDGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICI   89 (294)
Q Consensus        10 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~   89 (294)
                      .|..++|+    +. .|+.. .++.+..++...-........-..++..+.++|   ..++....+|.+.++++..++..
T Consensus        88 ~v~~vafs----~d-~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~  158 (381)
T d1xipa_          88 DVIFVCFH----GD-QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTK  158 (381)
T ss_dssp             TEEEEEEE----TT-EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEE
T ss_pred             CeEEEEee----CC-EEEEE-eCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccc
Confidence            47778886    33 45444 445688888766544444444567788999888   35666777899999999887654


Q ss_pred             EEeecc--CCCCCceeEEEEecCCCceEEeee
Q 022590           90 LIFAGA--GGHRNEVLSVDFHPSDIYRIASCG  119 (294)
Q Consensus        90 ~~~~~~--~~~~~~v~~l~~~~~~~~~l~~~~  119 (294)
                      ......  -.-.+.+.+++|++ ++..++++.
T Consensus       159 ~~~~~v~~~~~~~~~~~v~ws~-kgkq~v~~~  189 (381)
T d1xipa_         159 QLAQNVTSFDVTNSQLAVLLKD-RSFQSFAWR  189 (381)
T ss_dssp             EEEESEEEEEECSSEEEEEETT-SCEEEEEEE
T ss_pred             cccCCcceEEecCCceEEEEeC-CcEEEEEeC
Confidence            332110  01235577788877 666666653

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.08  E-value=1.5  Score=31.76  Aligned_cols=62  Identities=15%  Similarity=-0.029  Sum_probs=38.4

Q ss_pred             CCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccC-CCEEEE
Q 022590          215 CDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYD-GSTILS  279 (294)
Q Consensus       215 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s  279 (294)
                      ...+.++++|+++ .++++-+..+.|+.|++............  .-....-.+.+.++ |.+.+.
T Consensus       206 ~~pNGI~~s~d~~-~lyVa~t~~~~i~~y~~~~~~~l~~~~~~--~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         206 DFANGINISPDGK-YVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEE
T ss_pred             CccceeEECCCCC-EEEEEeCCCCeEEEEEeCCCcccceEEEe--cCCCCCCccEEecCCCEEEEE
Confidence            4577899999986 46667778899999999865432222111  11234556777654 444433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.86  E-value=2.3  Score=33.51  Aligned_cols=48  Identities=8%  Similarity=0.157  Sum_probs=36.0

Q ss_pred             ceEEEEcCCCeEEEEeccCCCceeeeeccccccCCCeEEEEEccCCC-EEEE
Q 022590          229 NAAAIGNREGKIFVWELQSSPPVLIARLSHAQSKSPIRQTAMSYDGS-TILS  279 (294)
Q Consensus       229 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s  279 (294)
                      .+++.|+.||.++-+|.++++.+....+.......+++   |..+|+ |++.
T Consensus       485 glVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~t---Y~~dGkQYvav  533 (596)
T d1w6sa_         485 DLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMT---YTHKGTQYVAI  533 (596)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE---EEETTEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeE---EEECCEEEEEE
Confidence            47778999999999999999988888777555556654   445775 5554

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.79  E-value=1.5  Score=29.29  Aligned_cols=217  Identities=11%  Similarity=0.086  Sum_probs=112.7

Q ss_pred             CCceEEEEeecCCeEEEEEcCCccccceecccCcceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEE----------
Q 022590           21 DGIPFLVAGGINGIIRVIDVSNEKLHKSFVGHGDSINEIRTQPLKPSLVVSASKDESVRLWNVQTGICIL----------   90 (294)
Q Consensus        21 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----------   90 (294)
                      +++++++.+...|.+.++-+..++.++.-+   .+|..... | ..      +-|..+.+-|+..|+..+          
T Consensus        24 ~~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~-P-k~------~ldfi~f~RDV~kGkE~Hai~~~Nlk~~   92 (313)
T d2hu7a1          24 DGDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLD-P-HY------GVGRVILVRDVSKGAEQHALFKVNTSRP   92 (313)
T ss_dssp             TTTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECE-E-CT------TBSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred             cCCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCC-C-cc------CcceEEEEeehhcCcceeeEEEEccCCC
Confidence            444589999999999999988777654332   34333221 1 11      112223333444443322          


Q ss_pred             ----EeeccCCCCCceeEEEEecCCCceEEeeecCCcEEEEeccccccccccceeecCCCCCCCCceeeeceEEeecCCC
Q 022590           91 ----IFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSN  166 (294)
Q Consensus        91 ----~~~~~~~~~~~v~~l~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (294)
                          .+..  ...-.|.+++..  +.+..++|+......+|-+..+.......+              ..--.......+
T Consensus        93 GEE~~i~s--pk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~v--------------PpFsFVtDI~~d  154 (313)
T d2hu7a1          93 GEEQRLEA--VKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARL--------------PGFGFVSDIRGD  154 (313)
T ss_dssp             TCEEECTT--SCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEE--------------SSCEEEEEEETT
T ss_pred             CeeeEecC--CceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccC--------------CCcceEEeccCC
Confidence                2221  112456677775  778888888888888888876432110000              000011122233


Q ss_pred             ceeeccee---cceEEEeeC-CCeEEEecCCCCCCCCCCCCceeeeeeecCCCCeeEEEEcccCCcceEEEEcC---CCe
Q 022590          167 YVDCNRWL---GDFILSKSV-DNEIVLWEPKMKEQSPGEGTADILQKYPVPECDIWFIKFSCDFHYNAAAIGNR---EGK  239 (294)
Q Consensus       167 ~i~~~~~~---~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~  239 (294)
                      .|..+.+-   ..-|+++.. .|.+++++...+.                    ++.....+..+   ++++.+   +..
T Consensus       155 ~I~G~g~~~g~~~sfF~adl~SG~lri~tpkeGS--------------------~~~ay~~~gnK---V~sdyEt~gEsy  211 (313)
T d2hu7a1         155 LIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGS--------------------FSSASISPGMK---VTAGLETAREAR  211 (313)
T ss_dssp             EEEEEEEEETTEEEEEEEETTTEEEEEECCSSEE--------------------EEEEEECTTSC---EEEEEEESSCEE
T ss_pred             eEEEEeeecCCcceEEEEecccCCEEEecCCCCc--------------------ccceeEccCce---eeeccCCCCceE
Confidence            44444442   223444444 7778888776442                    33344444442   233321   122


Q ss_pred             EEEEeccCCCceeeeecc----ccccCCCeEEEEEccCCCEEEEeccCCcEEEEe
Q 022590          240 IFVWELQSSPPVLIARLS----HAQSKSPIRQTAMSYDGSTILSCCEDGAIWRWD  290 (294)
Q Consensus       240 i~i~d~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~vw~  290 (294)
                      ..-+|+++++...+ .++    ..-....|.-+-+.|++++++.+-.||.=++|.
T Consensus       212 wit~D~~s~~yerv-e~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         212 LVTVDPRDGSVEDL-ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI  265 (313)
T ss_dssp             EEEECTTTCCEEEC-CCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred             EEEEecccCceeee-ecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence            22457776642211 111    001123466677999999989998999877774

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=1.9  Score=29.88  Aligned_cols=28  Identities=11%  Similarity=0.286  Sum_probs=17.4

Q ss_pred             ceEEEEcCCC-----eEEEEeccCCCceeeeec
Q 022590          229 NAAAIGNREG-----KIFVWELQSSPPVLIARL  256 (294)
Q Consensus       229 ~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~  256 (294)
                      .+++.|+.++     .+.+||+.+.+...+..+
T Consensus       244 ~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~  276 (288)
T d1zgka1         244 RIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRM  276 (288)
T ss_dssp             EEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEecCCCCeecceEEEEECCCCEEEECCCC
Confidence            4666665443     378899888764444443

>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Semaphorin 3a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.81  E-value=2.1  Score=32.84  Aligned_cols=72  Identities=15%  Similarity=0.154  Sum_probs=45.8

Q ss_pred             eeEEEEc----ccCCcceEEEEcCCCeEEEEec-cCC-----CceeeeeccccccCCCeEEEEEccCCCEEEEeccCCcE
Q 022590          217 IWFIKFS----CDFHYNAAAIGNREGKIFVWEL-QSS-----PPVLIARLSHAQSKSPIRQTAMSYDGSTILSCCEDGAI  286 (294)
Q Consensus       217 i~~~~~~----~~~~~~~l~~~~~dg~i~i~d~-~~~-----~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i  286 (294)
                      .+.++.+    +++.+..+..|+.+|.|.-.-+ ...     +......+.......+|..|.+++++++|..++.++.+
T Consensus       406 ~T~iav~~v~~~~~~~tV~flGT~~G~l~Kv~~~~~~~~~~~~~~~iee~~~~~~~~pI~~l~l~~~~~~Lyv~t~~~V~  485 (495)
T d1q47a_         406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA  485 (495)
T ss_dssp             EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred             eEEEEEEEEeccCCcEEEEEEEcCCCEEEEEEEcCCCCccccceeEEEEEeecCCCCceEEEEEeCCCCEEEEEeCCeEE
Confidence            4555542    3344568888999999874322 111     11122233323556789999999999999999998876


Q ss_pred             EE
Q 022590          287 WR  288 (294)
Q Consensus       287 ~v  288 (294)
                      +|
T Consensus       486 ~v  487 (495)
T d1q47a_         486 QL  487 (495)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.87  E-value=4.7  Score=30.03  Aligned_cols=58  Identities=7%  Similarity=0.003  Sum_probs=36.0

Q ss_pred             cceEEEEeCCCCCceEE-EeeCC----CcEEEEEcCCCceEEEeeccCCCCCceeEEEEecCCCceEEe
Q 022590           54 DSINEIRTQPLKPSLVV-SASKD----ESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDIYRIAS  117 (294)
Q Consensus        54 ~~v~~~~~~~~~~~~l~-s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l~~  117 (294)
                      -.+...+++| ++++++ +-+.+    ..|++.|+.+++.+....    .......+.|.+ ++..|+-
T Consensus       125 ~~~~~~~~Sp-d~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i----~~~~~~~~~W~~-D~~~~~Y  187 (430)
T d1qfma1         125 VALRGYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL----ERVKFSCMAWTH-DGKGMFY  187 (430)
T ss_dssp             EEEEEEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE----EEECSCCEEECT-TSSEEEE
T ss_pred             ceecceEecC-CCCEEEEEeccccCchheeEEeccCcceeccccc----ccccccceEEcC-CCCEEEE
Confidence            3455678899 666665 33333    369999999998765322    111225688998 5554543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=86.23  E-value=3.3  Score=27.61  Aligned_cols=150  Identities=13%  Similarity=0.124  Sum_probs=81.4

Q ss_pred             ceEEEEeCCCCCceEEEeeCCCcEEEEEcCCCceEEEeecc--C----CCCCceeEEEEecCCCceEEeeec-CCcEEEE
Q 022590           55 SINEIRTQPLKPSLVVSASKDESVRLWNVQTGICILIFAGA--G----GHRNEVLSVDFHPSDIYRIASCGM-DNTVKIW  127 (294)
Q Consensus        55 ~v~~~~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~----~~~~~v~~l~~~~~~~~~l~~~~~-dg~i~~w  127 (294)
                      .|.++++.  +.+..++|+......+|-++.|+........  .    -....|..+.+-..+..-|+++.. .|.++++
T Consensus       105 RI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~  182 (313)
T d2hu7a1         105 RILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVF  182 (313)
T ss_dssp             EEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEE
T ss_pred             EEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEe
Confidence            45666664  5778888888888899988877654332210  0    012345555554324444666665 7888888


Q ss_pred             eccccccccccceeecCCCCCCCCceeeeceEEeecCCCceeeccee-cceEEEeeC---CCeEEEecCCCCCCCCCCCC
Q 022590          128 SMKEFWTYVEKSFTWTDLPSKFPTKYVQFPVFIASVHSNYVDCNRWL-GDFILSKSV---DNEIVLWEPKMKEQSPGEGT  203 (294)
Q Consensus       128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~  203 (294)
                      +...+.                                  ++...+. |+.+++.-.   +....-+|+++++-....-+
T Consensus       183 tpkeGS----------------------------------~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P  228 (313)
T d2hu7a1         183 DSGEGS----------------------------------FSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELP  228 (313)
T ss_dssp             CCSSEE----------------------------------EEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCS
T ss_pred             cCCCCc----------------------------------ccceeEccCceeeeccCCCCceEEEEEecccCceeeeecC
Confidence            877631                                  1111111 333333221   12233558876642111111


Q ss_pred             ceeeeeeecCCCCeeEEEEcccCCcceEEEEcCCCeEEEEe
Q 022590          204 ADILQKYPVPECDIWFIKFSCDFHYNAAAIGNREGKIFVWE  244 (294)
Q Consensus       204 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d  244 (294)
                      ...+..  .....|..+-+.|++  .+++.+-.||.-++|.
T Consensus       229 ~kd~~s--y~p~~I~~~~Y~Pdd--~L~iiakrdG~s~lF~  265 (313)
T d2hu7a1         229 SKDFSS--YRPTAITWLGYLPDG--RLAVVARREGRSAVFI  265 (313)
T ss_dssp             SCHHHH--HCCSEEEEEEECTTS--CEEEEEEETTEEEEEE
T ss_pred             ccccee--ecceEEEeeeeCCCC--cEEEEEecCCchheee
Confidence            111111  112345666788998  4778888999999886

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.34  E-value=6.2  Score=29.70  Aligned_cols=58  Identities=14%  Similarity=0.052  Sum_probs=41.0

Q ss_pred             CCCeeEEEEcccCCcceEEEEcCCCeEEEEeccCCCceeeeeccc----cccCCCeEEEEEccC
Q 022590          214 ECDIWFIKFSCDFHYNAAAIGNREGKIFVWELQSSPPVLIARLSH----AQSKSPIRQTAMSYD  273 (294)
Q Consensus       214 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~v~~~~~s~~  273 (294)
                      -...+.|+|.|++  +++++--..|.|++++..+++......+..    .........|+++|+
T Consensus        26 L~~P~~la~~pdg--~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDN--QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTS--CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCC--eEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4567899999999  566666557999999988876544444331    122356789999985