Citrus Sinensis ID: 022597

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Secondary Structure (PSIPRED)
cccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHccccccccEEEEEccccccHHHHHHHHccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHEEEEEEEcccEEcccccccccccccEccccEEEEEEccccccEEEEccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHEEEEcEEHHHHHHHHHHHccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHccccEEEEEccccccEEcccccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEcc
Coil and Loop (DISEMBL)
MASSLVANRFAFVLLKTEKTVAkfhsfplserlrlrpckfktknqfttnccvssahdekysnkqvisvtpplydyiLRNVREPEILRQLREEtagmrgsqmqvsPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALvlpesgclvaCERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILngeassydfaFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKnlmedervsismvpigdgmticqkr
Flexible Loop (DISEMBL)
MASSLVANRFAFVLlktektvakfhsfplserlrlrpckfktknqfttnccvssahdekysnkqvisvtppLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYyeragvshkvkiKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNfnknlmedervsismvpigdgmticqkr
Low Complexity Region (SEG)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEvgvytvcvssystsilslfsGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Disordered region (IsUnstruct)
****LVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEIL*********************AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGM******
Disordered Region (DISOPRED)
*********FAFVLLKTEKTVAKFHSFPLSERLRL**********************************PPLYDYILRNVREPEILRQLREETAGMRG**MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Disordered Region (DISEMBL)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREET***********PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Disordered Region (DISPRO)
*ASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
Q9XGP7	252	Tricin synthase 1 OS=Oryz	no	no	0.772	0.900	0.403	7e-43
Q9C5D7	232	Probable caffeoyl-CoA O-m	no	no	0.693	0.879	0.405	1e-38
Q00719	221	O-methyltransferase MdmC	N/A	no	0.721	0.959	0.354	5e-38
Q9XGD5	264	Caffeoyl-CoA O-methyltran	N/A	no	0.697	0.776	0.401	3e-37
Q9C9W3	232	Putative caffeoyl-CoA O-m	no	no	0.656	0.831	0.399	6e-36
Q86IC9	230	Probable caffeoyl-CoA O-m	yes	no	0.605	0.773	0.396	8e-36
P28034	241	Caffeoyl-CoA O-methyltran	N/A	no	0.700	0.854	0.364	1e-35
Q86IC8	231	Probable caffeoyl-CoA O-m	yes	no	0.605	0.770	0.396	1e-35
Q43237	242	Caffeoyl-CoA O-methyltran	no	no	0.697	0.847	0.384	2e-35
Q9C9W4	233	Tapetum-specific methyltr	no	no	0.738	0.931	0.368	2e-35

>sp|Q9XGP7|OMT15_ORYSJ Tricin synthase 1 OS=Oryza sativa subsp. japonica GN=ROMT-15 PE=1 SV=1

 Score =  174 bits (441), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/255 (40%), Positives = 146/255 (57%), Gaps = 28/255 (10%)

Query: 52  VSSAHDEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQA 108
           + +AH +  S  + +  +  LY Y+L      REPE +R LR  T   +   MQ S D+A
Sbjct: 11  IKNAHSDIDSTNKTLLKSDALYKYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEA 70

Query: 109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERD 168
           QLL ML+++ GA+R IEVGV               F+GYS LA AL LPE G +VA + D
Sbjct: 71  QLLGMLLKMAGAKRTIEVGV---------------FTGYSLLATALALPEDGKVVAIDPD 115

Query: 169 ARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI----LNGEASSYDFAFVDAEKRMYQ 224
             S E+ + + E+AGV+HKV  + G   + L  L+      G  +++DFAFVDA+K  Y 
Sbjct: 116 RESYEIGRPFLEKAGVAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYV 175

Query: 225 EYFELLLQLIRVGGIIVIDNVLWHGKVA---DQMVNDAK---TISIRNFNKNLMEDERVS 278
           +Y E LLQL+RVGG IV DN LW G VA   D  ++D     +++IR+ N  L  D R+ 
Sbjct: 176 KYHEQLLQLVRVGGHIVYDNTLWAGTVALPPDTPLSDLDRRFSVAIRDLNSRLAADPRID 235

Query: 279 ISMVPIGDGMTICQK 293
           +  + I DG+TIC++
Sbjct: 236 VCQLAIADGITICRR 250

Catalyzes the stepwise methylation of tricetin to its 3'-mono- and 3',5'-dimethyl ethers. No 3',4',5'-trimethylated ester derivatives are produced. Can use caffeoyl-CoA, 5-hydroxyferulic acid, luteolin, tricetin, quercetin, myrcetin and 7,8-dihydroxyflavone as substrates, but not naringenin, apigenin or kaempferol. The 2,3-double bond and the O-dihydroxyl group of the substrate are both required for catalytic activity of the enzyme.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 7EC: 5

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/234 (40%), Positives = 128/234 (54%), Gaps = 30/234 (12%)

Query: 72  LYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE+LR+LR  T     + M  +PD  QL+ ML+ ++ A++ IEVGV
Sbjct: 15  LYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVNARKTIEVGV 74

Query: 129 YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 188
                          F+GYS L  AL LPE G ++A + +  S E+     ++AGV HK+
Sbjct: 75  ---------------FTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKI 119

Query: 189 KIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247
             K   A  +L  L+ N      +DFAFVDA+K  Y  Y E L++LI+VGGIIV DN LW
Sbjct: 120 DFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLW 179

Query: 248 HGKVADQMVNDAKTISIR--------NFNKNLMEDERVSISMVPIGDGMTICQK 293
            G VA+    D+ T   R          NK L  D+RV IS   +GDG+TIC++
Sbjct: 180 GGSVAEP---DSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRR 230

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q00719|MDMC_STRMY O-methyltransferase MdmC OS=Streptomyces mycarofaciens GN=mdmC PE=3 SV=1

 Score =  158 bits (399), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 138/231 (59%), Gaps = 19/231 (8%)

Query: 67  SVTPPLYDYILRNV--REPEILRQLREETAGMRGSQ-MQVSPDQAQLLAMLVQILGAQRC 123
           +++P L DY  R+V  RE  +LR+L + TA + G + MQ+ P++AQ L +L++++GA+R 
Sbjct: 6   TLSPALLDYA-RSVALREDGLLRELHDMTAQLPGGRAMQIMPEEAQFLGLLIRLVGARRV 64

Query: 124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 183
           +E+G                F+GYS+L +A  LP  G +V C+   +   +   +++RAG
Sbjct: 65  LEIGT---------------FTGYSTLCMARALPAGGRIVTCDISDKWPGIGAPFWQRAG 109

Query: 184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 243
           V   + ++ G AA +L  L       ++D  FVDA+K  Y  Y+E  L L+R GG++ ID
Sbjct: 110 VDGLIDLRIGDAARTLAELRERDGDGAFDLVFVDADKAGYLHYYEQALALVRPGGLVAID 169

Query: 244 NVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
           N L+ G+VAD   +D  T+++R  N  L +DERV I+++ + DG+T+ ++R
Sbjct: 170 NTLFFGRVADPAADDPDTVAVRTLNDLLRDDERVDIALLTVADGITLARRR 220

4-O-methyltransferase for the lactone ring of midecamycin and other macrolide antibiotics.

Streptomyces mycarofaciens (taxid: 1949)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9XGD5|CAMT2_MAIZE Caffeoyl-CoA O-methyltransferase 2 OS=Zea mays GN=CCOAOMT2 PE=2 SV=1

 Score =  155 bits (393), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/234 (40%), Positives = 134/234 (57%), Gaps = 29/234 (12%)

Query: 72  LYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++GA++ +E+GV
Sbjct: 46  LYQYILDTSVYPREPESMKELREITAKHPWNLMTTSADEGQFLNMLIKLIGAKKTMEIGV 105

Query: 129 YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 188
           YT               GYS LA AL LPE G ++A + +  + E+      +AGV HK+
Sbjct: 106 YT---------------GYSLLATALALPEDGTILAMDINRENYELGLPCINKAGVGHKI 150

Query: 189 KIKHGLAADSLKALILNGEA-SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247
             + G A   L  L+ + E   S+DFAFVDA+K  Y  Y E LL+L+R GG+I  DN LW
Sbjct: 151 DFREGPALPVLDDLVADKEQHGSFDFAFVDADKDNYLNYHERLLKLVRPGGLIGYDNTLW 210

Query: 248 HGKVADQMVNDA---KTISI-RNF----NKNLMEDERVSISMVPIGDGMTICQK 293
           +G V   + +DA   K I   R+F    N  L  D+RV I  +P+GDG+T+C++
Sbjct: 211 NGSVV--LPDDAPMRKYIRFYRDFVLALNSALAADDRVEICQLPVGDGVTLCRR 262

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W3|CAMT1_ARATH Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1

 Score =  151 bits (381), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/223 (39%), Positives = 126/223 (56%), Gaps = 30/223 (13%)

Query: 81  REPEILRQLREETAGMRG--SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYST 138
           RE E+L++LR+ T    G  S+M+V  D+   L+MLV+I+ A+  IE+GV+T        
Sbjct: 28  REHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKIMNAKNTIEIGVFT-------- 79

Query: 139 SILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198
                  GYS L  AL LPE G + A + D  + EV  ++ ++AGV HK+   H   +D 
Sbjct: 80  -------GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIH---SDG 129

Query: 199 LKALI-LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVN 257
           LKAL  L  +   +DFAF DA+K  Y  + E LL+L++VGGII  DN LW G VA+    
Sbjct: 130 LKALDQLVNDKCEFDFAFADADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAED--E 187

Query: 258 DAKTISIR-------NFNKNLMEDERVSISMVPIGDGMTICQK 293
           D     +R        FNK L  D RV +S + IGDG+T+C++
Sbjct: 188 DGVPEHMREYRAALIEFNKKLALDPRVEVSQISIGDGITLCRR 230

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q86IC9|CAMT1_DICDI Probable caffeoyl-CoA O-methyltransferase 1 OS=Dictyostelium discoideum GN=omt5 PE=3 SV=1

 Score =  150 bits (380), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 117/194 (60%), Gaps = 16/194 (8%)

Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG 160
           M    +Q     +L+Q+L A++ I++GV               F+G SSL  AL + + G
Sbjct: 50  MLTQAEQCSFFKLLIQVLNAKKTIDIGV---------------FTGLSSLTAALAMGDEG 94

Query: 161 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK 220
            +VAC+      + A K++ +AGV HK+ +K   A+ +L+ LI  GE ++YDF F+DA+K
Sbjct: 95  RVVACDVSTDYTQHALKFWAKAGVDHKINLKIQPASKTLQELIDQGEENTYDFVFIDADK 154

Query: 221 RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVN-DAKTISIRNFNKNLMEDERVSI 279
             Y  Y+EL L+LIR GGII IDNVL HG+VAD   N +   ++IR  N  ++ D+RV+ 
Sbjct: 155 TGYDTYYELSLKLIRKGGIIAIDNVLQHGRVADPNANVEPNLVAIRALNDKILADKRVTK 214

Query: 280 SMVPIGDGMTICQK 293
           +M+PI DG+T+  K
Sbjct: 215 TMLPIADGITLVTK 228

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|P28034|CAMT_PETCR Caffeoyl-CoA O-methyltransferase OS=Petroselinum crispum PE=1 SV=1

 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 131/233 (56%), Gaps = 27/233 (11%)

Query: 72  LYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++ A+  +E+GV
Sbjct: 23  LYQYILETSVYPREPEAMKELREVTAKHPWNLMTTSADEGQFLNMLLKLINAKNTMEIGV 82

Query: 129 YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 188
           YT               GYS LA AL LP+ G ++A + +  + E+     E+AGV HK+
Sbjct: 83  YT---------------GYSLLATALALPDDGKILAMDINRENYEIGLPIIEKAGVGHKI 127

Query: 189 KIKHGLAADSLKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247
             + G A   L  ++ +G+   ++DF FVDA+K  Y  Y + L+ L+++GG+I  DN LW
Sbjct: 128 DFREGPALPVLDHMLEDGKYHGTFDFVFVDADKDNYINYHKRLIDLVKIGGLIGYDNTLW 187

Query: 248 HGKVADQMVNDAKTISIRNF-------NKNLMEDERVSISMVPIGDGMTICQK 293
           +G VA Q  +      +R +       NK L  D R+ I M+P+GDG+T+C++
Sbjct: 188 NGSVA-QPADAPMRKYVRYYRDFVIELNKALAADPRIEICMLPVGDGVTLCRR 239

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Petroselinum crispum (taxid: 4043)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q86IC8|CAMT2_DICDI Probable caffeoyl-CoA O-methyltransferase 2 OS=Dictyostelium discoideum GN=omt6 PE=1 SV=1

 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 117/194 (60%), Gaps = 16/194 (8%)

Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG 160
           M    +Q     +L+Q+L A++ I++GV               F+G SSL  AL + + G
Sbjct: 51  MLTQAEQCSFFKLLIQVLNAKKTIDIGV---------------FTGLSSLTAALAMGDEG 95

Query: 161 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK 220
            +VAC+      + A K++ +AGV HK+ +K   A+ +L+ LI  GE ++YDF F+DA+K
Sbjct: 96  RVVACDVSTEYTQHALKFWAKAGVDHKINLKIQPASKTLQELIDQGEENTYDFVFIDADK 155

Query: 221 RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVN-DAKTISIRNFNKNLMEDERVSI 279
             Y  Y+EL L+LIR GGII IDNVL HG+VAD   N +   ++IR  N  ++ D+RV+ 
Sbjct: 156 TGYDTYYELSLKLIRKGGIIAIDNVLQHGRVADPNANVEPNLVAIRALNDKILADKRVTK 215

Query: 280 SMVPIGDGMTICQK 293
           S++PI DG+T+  K
Sbjct: 216 SLLPIADGITLITK 229

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43237|CAMT_VITVI Caffeoyl-CoA O-methyltransferase OS=Vitis vinifera PE=2 SV=1

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/234 (38%), Positives = 131/234 (55%), Gaps = 29/234 (12%)

Query: 72  LYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++ A+  +E+GV
Sbjct: 24  LYQYILETSVYPREPESMKELRELTAQHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGV 83

Query: 129 YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 188
           YT               GYS LA AL LP+ G ++A + +  + E+     ++AGV+HK+
Sbjct: 84  YT---------------GYSLLATALALPDDGKILAMDINKENYELGLPVIQKAGVAHKI 128

Query: 189 KIKHGLAADSLKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247
             K G A   L  +I +G+   S+DF FVDA+K  Y  Y + L+ L++VGGII  DN LW
Sbjct: 129 DFKEGPALPVLDQMIEDGKYHGSFDFIFVDADKDNYLNYHKRLIDLVKVGGIIGYDNTLW 188

Query: 248 HGKVADQMVNDAKTIS----IRNF----NKNLMEDERVSISMVPIGDGMTICQK 293
           +G V      DA         R+F    NK L  D R+ I M+P+GDG+T+C++
Sbjct: 189 NGSVV--APPDAPLRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRR 240

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Vitis vinifera (taxid: 29760)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W4|TSM1_ARATH Tapetum-specific methyltransferase 1 OS=Arabidopsis thaliana GN=TSM1 PE=1 SV=2

 Score =  149 bits (377), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/250 (36%), Positives = 140/250 (56%), Gaps = 33/250 (13%)

Query: 57  DEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRG--SQMQVSPDQAQLL 111
           D +  +K ++  +  L  YI+      RE E+L++LRE T    G  S+M V  D++  L
Sbjct: 2   DGRLPDKGILK-SEALKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFL 60

Query: 112 AMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARS 171
           +MLV+I+ A+  IE+GV               F+GYS   +AL LPE G + A + D   
Sbjct: 61  SMLVKIINAKNTIEIGV---------------FTGYSLFTVALALPEDGRITAIDIDQAG 105

Query: 172 LEVAKKYYERAGVSHKVKIKHGLAADSLKAL--ILNGEASSYDFAFVDAEKRMYQEYFEL 229
             +  ++ ++AGV HK+     + +D+++ L  +LNGE   YDFAFVDA+K  Y  + E 
Sbjct: 106 YNLGLEFMKKAGVDHKINF---IQSDAVRGLDQLLNGEKQEYDFAFVDADKTNYVYFLEK 162

Query: 230 LLQLIRVGGIIVIDNVLWHGKVADQMVND------AKTISIRNFNKNLMEDERVSISMVP 283
           LL+L++VGGII  DN LW G +  Q  N+      A   ++  FNK L  D RV I+ + 
Sbjct: 163 LLKLVKVGGIIAFDNTLWFGTLI-QKENEVPGHMRAYREALLEFNKILARDPRVEIAQIS 221

Query: 284 IGDGMTICQK 293
           IGDG+T+C++
Sbjct: 222 IGDGLTLCRR 231

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
255548155	290	o-methyltransferase, putative [Ricinus c	0.945	0.958	0.665	1e-108
297821086	278	O-methyltransferase family 3 protein [Ar	0.925	0.978	0.656	1e-108
15228652	278	S-adenosyl-L-methionine-dependent methyl	0.925	0.978	0.66	1e-107
225453692	280	PREDICTED: probable caffeoyl-CoA O-methy	0.765	0.803	0.783	1e-106
356525835	311	PREDICTED: O-methyltransferase mdmC-like	0.836	0.790	0.728	1e-106
388521881	314	unknown [Lotus japonicus]	0.887	0.831	0.657	1e-106
224068269	352	trans-caffeoyl-coa 3-o-methyltransferase	0.734	0.613	0.787	1e-100
356555143	242	PREDICTED: LOW QUALITY PROTEIN: probable	0.795	0.966	0.726	1e-100
334186194	352	S-adenosyl-L-methionine-dependent methyl	0.884	0.738	0.638	3e-99
449460066	293	PREDICTED: tricin synthase 1-like [Cucum	0.874	0.877	0.643	3e-98

>gi|255548155|ref|XP_002515134.1| o-methyltransferase, putative [Ricinus communis] gi|223545614|gb|EEF47118.1| o-methyltransferase, putative [Ricinus communis]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/302 (66%), Positives = 232/302 (76%), Gaps = 24/302 (7%)

Query: 2   ASSLVANRFAFVLLKTEKTVAK-FHSFPLSERLRLRPCK--------FKTKNQFTTNCCV 52
           A +   NR +F+  +     A      PL   +  R CK          + +  +++  V
Sbjct: 4   ACAWAVNRCSFLACQRATFAATVIRGRPLRIAISFRECKSIRFARNCCCSSSSTSSDLAV 63

Query: 53  SSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLA 112
             A+D+KY NKQ+IS+TP LYDYIL NVREPEILRQLREETA M GSQMQVSPDQAQLLA
Sbjct: 64  VVANDDKYGNKQIISLTPCLYDYILSNVREPEILRQLREETAAMPGSQMQVSPDQAQLLA 123

Query: 113 MLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSL 172
           MLVQILGA+RCIE+GVYT               GYSSLA+ALVLPESGCLVACERDA SL
Sbjct: 124 MLVQILGAKRCIELGVYT---------------GYSSLAVALVLPESGCLVACERDANSL 168

Query: 173 EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ 232
            VA+KYYERAGVSHKV +KHG+AADSLK+LILNGE SSYDFAFVDAEK+M QEYFELLLQ
Sbjct: 169 NVAQKYYERAGVSHKVHVKHGMAADSLKSLILNGEESSYDFAFVDAEKKMNQEYFELLLQ 228

Query: 233 LIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQ 292
           L+RVGG+IV+DNVLWHGKVAD ++NDA+T+SIRNFNK LMED RVSISMV IGDGMTIC+
Sbjct: 229 LVRVGGVIVVDNVLWHGKVADPLINDARTVSIRNFNKTLMEDNRVSISMVSIGDGMTICR 288

Query: 293 KR 294
           K+
Sbjct: 289 KK 290

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821086|ref|XP_002878426.1| O-methyltransferase family 3 protein [Arabidopsis lyrata subsp. lyrata] gi|297324264|gb|EFH54685.1| O-methyltransferase family 3 protein [Arabidopsis lyrata subsp. lyrata]

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/300 (65%), Positives = 235/300 (78%), Gaps = 28/300 (9%)

Query: 1   MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSA----- 55
           M++ L  NR +  + +T  T+    +  +     +R  KF   ++   NC ++ A     
Sbjct: 1   MSTGLALNRCSISVCRTAGTLLNRPTVSV-----VRSLKFS--HRLIGNCSIAPADPVVV 53

Query: 56  -HDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
             D KY NK+VIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  AEDVKYGNKEVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV 174
           VQ+LGA+RCIEVGVYT               GYSSLA+ALVLPESGCLVACERD+ SLEV
Sbjct: 114 VQLLGAERCIEVGVYT---------------GYSSLAVALVLPESGCLVACERDSNSLEV 158

Query: 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI 234
           AK+YY+ AGVSHKV +KHGLAA+SLK++I NGE SSYDFAFVDA+KRMYQ+YFELLLQL+
Sbjct: 159 AKRYYKLAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLV 218

Query: 235 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
           RVGG+IV+DNVLWHG+V D +VNDAKTISIRNFNK LM+D+RVSISMVPIGDGMTIC+KR
Sbjct: 219 RVGGVIVMDNVLWHGRVTDPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228652|ref|NP_191759.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|6899898|emb|CAB71907.1| putative protein [Arabidopsis thaliana] gi|17979264|gb|AAL49948.1| AT3g62000/F21F14_170 [Arabidopsis thaliana] gi|20334816|gb|AAM16164.1| AT3g62000/F21F14_170 [Arabidopsis thaliana] gi|332646770|gb|AEE80291.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/300 (66%), Positives = 232/300 (77%), Gaps = 28/300 (9%)

Query: 1   MASSLVANRFAFVLLKT------EKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSS 54
           M++ L  NR +  + +T        TV+   S   S RL +  C     + +        
Sbjct: 1   MSTGLALNRCSVSVCRTAVTLLNRPTVSVARSLKFSRRL-IGNCSIAPADPYVV------ 53

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           A D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  ADDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV 174
           VQ+L A+RCIEVGVYT               GYSSLA+ALVLPESGCLVACERD+ SLEV
Sbjct: 114 VQMLAAERCIEVGVYT---------------GYSSLAVALVLPESGCLVACERDSNSLEV 158

Query: 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI 234
           AK+YYE AGVSHKV +K GLAA+SLK++I NGE +SYDFAFVDA+KRMYQ+YFELLLQL+
Sbjct: 159 AKRYYELAGVSHKVNVKQGLAAESLKSMIQNGEGASYDFAFVDADKRMYQDYFELLLQLV 218

Query: 235 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
           RVGG+IV+DNVLWHG+V+D MVNDAKTISIRNFNK LM+D+RVSISMVPIGDGMTIC+KR
Sbjct: 219 RVGGVIVMDNVLWHGRVSDPMVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453692|ref|XP_002269070.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Vitis vinifera] gi|296089045|emb|CBI38748.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/240 (78%), Positives = 212/240 (88%), Gaps = 15/240 (6%)

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           + D KY NKQVI++TP LYDYIL NVREPEILRQLREETA MRGSQMQVSP+QAQLLAML
Sbjct: 56  SDDPKYGNKQVITITPRLYDYILTNVREPEILRQLREETANMRGSQMQVSPEQAQLLAML 115

Query: 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV 174
           VQILGA+RCIEVGVYT               GYSSLAIALVLPESG LVACERD++SLEV
Sbjct: 116 VQILGAERCIEVGVYT---------------GYSSLAIALVLPESGYLVACERDSKSLEV 160

Query: 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI 234
           AK+YY++AGVSHKV +KHGLA+D+LK+LILNGE+ SYDFAFVDAEKRM QEYFELLLQL+
Sbjct: 161 AKRYYKQAGVSHKVDVKHGLASDALKSLILNGESGSYDFAFVDAEKRMNQEYFELLLQLV 220

Query: 235 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
           R  G+IVIDNVLWHGKVAD +VNDA+T+SIRNFNKN+MED+RVSISMVPIGDG+TIC+KR
Sbjct: 221 RTRGVIVIDNVLWHGKVADPLVNDARTVSIRNFNKNIMEDKRVSISMVPIGDGITICRKR 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525835|ref|XP_003531527.1| PREDICTED: O-methyltransferase mdmC-like [Glycine max]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 222/265 (83%), Gaps = 19/265 (7%)

Query: 33  LRLRPCKFKTKNQFTTNCCVSS---AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQL 89
            R R C+ + K +   +C  S    ++DE YSNKQV+S+TP LYDY+L+NVREPEILRQL
Sbjct: 63  FRFRECRCRWK-RIVRSCSTSEFVISNDENYSNKQVVSLTPRLYDYVLKNVREPEILRQL 121

Query: 90  REETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSS 149
           R+ETA MRGSQMQVSPDQAQLLAMLVQILGA+RCIEVGVYT               GYSS
Sbjct: 122 RQETASMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYT---------------GYSS 166

Query: 150 LAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 209
           LAIALVLPESG LVACERDA+SL+VAKKYY+ AGVSHKV +K GLA DSL++LILNGEA 
Sbjct: 167 LAIALVLPESGHLVACERDAKSLDVAKKYYQLAGVSHKVDVKLGLAMDSLESLILNGEAG 226

Query: 210 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNK 269
           SYDFAF+DAEK+M ++YFELLLQL+RVGG+IVIDNVLWHGKV+D +VND KTISIRNFN+
Sbjct: 227 SYDFAFIDAEKKMNEKYFELLLQLVRVGGLIVIDNVLWHGKVSDPLVNDPKTISIRNFNE 286

Query: 270 NLMEDERVSISMVPIGDGMTICQKR 294
            LMED+RVSISMVPIGDGMTIC+KR
Sbjct: 287 KLMEDKRVSISMVPIGDGMTICRKR 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521881|gb|AFK49002.1| unknown [Lotus japonicus]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/307 (65%), Positives = 228/307 (74%), Gaps = 46/307 (14%)

Query: 15  LKTEKTVAKFHSFPLS-------------------------ERLRLRPCKFKTKNQFTTN 49
           L+  K    FHSFP S                            RLR CK+K   Q   +
Sbjct: 25  LRPVKVFTSFHSFPSSCTVNHRSLHVSTARWCCSASSCSSRCCFRLRGCKWK---QVVRS 81

Query: 50  CCVSS---AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPD 106
           C ++    A DE Y NKQV+S+TP LY Y+L+NVREPEILRQLREETA MRGSQMQVSPD
Sbjct: 82  CSITDIVIASDESYGNKQVVSLTPRLYGYVLKNVREPEILRQLREETASMRGSQMQVSPD 141

Query: 107 QAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACE 166
           QAQLLAMLVQILGA+RCIEVGVYT               GYSSLAIALVLPESG LVA E
Sbjct: 142 QAQLLAMLVQILGAERCIEVGVYT---------------GYSSLAIALVLPESGRLVARE 186

Query: 167 RDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY 226
           RD +SL+VAKKYY+ AGVSHKV +K GLA DSL++LILNGEA SYDFAF+DAEKRM Q+Y
Sbjct: 187 RDPKSLDVAKKYYQLAGVSHKVDVKLGLAEDSLESLILNGEAGSYDFAFIDAEKRMTQKY 246

Query: 227 FELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGD 286
           FELLLQL+RVGG+IVIDNVLWHGKVAD +V+D+KTISIRNFN+ LMED+RVSISMVPIGD
Sbjct: 247 FELLLQLVRVGGVIVIDNVLWHGKVADPLVSDSKTISIRNFNQQLMEDKRVSISMVPIGD 306

Query: 287 GMTICQK 293
           GMTIC+K
Sbjct: 307 GMTICRK 313

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068269|ref|XP_002302692.1| trans-caffeoyl-coa 3-o-methyltransferase-like protein [Populus trichocarpa] gi|222844418|gb|EEE81965.1| trans-caffeoyl-coa 3-o-methyltransferase-like protein [Populus trichocarpa]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/231 (78%), Positives = 199/231 (86%), Gaps = 15/231 (6%)

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           A+DEKY NKQ IS+TP LYDYIL NVREPEILRQLREETA MRGSQMQVSPDQAQLLAML
Sbjct: 67  ANDEKYGNKQNISLTPRLYDYILSNVREPEILRQLREETASMRGSQMQVSPDQAQLLAML 126

Query: 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV 174
           VQILGA+RCIE+GVYT               GYSSLA+ALVLP+S CLVACERDA+SLEV
Sbjct: 127 VQILGAKRCIELGVYT---------------GYSSLAVALVLPDSACLVACERDAKSLEV 171

Query: 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI 234
           AKKYYE AGVSHKV +KHG+AAD LK+LILNGE+ SYDFAFVDAEKRM QEYFELLLQL+
Sbjct: 172 AKKYYELAGVSHKVDVKHGMAADILKSLILNGESCSYDFAFVDAEKRMNQEYFELLLQLV 231

Query: 235 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIG 285
           RV G+IVIDNVLWHGKVAD +VNDAKT+SIR+FNKN+MED RVSISM   G
Sbjct: 232 RVDGVIVIDNVLWHGKVADPLVNDAKTVSIRSFNKNIMEDPRVSISMTQAG 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555143|ref|XP_003545896.1| PREDICTED: LOW QUALITY PROTEIN: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Glycine max]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/249 (72%), Positives = 205/249 (82%), Gaps = 15/249 (6%)

Query: 46  FTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSP 105
           F T      A D+ Y  KQV+S+TP LYDY+L+NVREPEILRQLR+ET  M GSQM VSP
Sbjct: 9   FITTTEFVIASDDNYGKKQVVSLTPFLYDYVLKNVREPEILRQLRQETTSMLGSQMXVSP 68

Query: 106 DQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVAC 165
           D AQLLAMLVQILGA++CIEVGVYT               GYSSLA+ALVLPESG LVAC
Sbjct: 69  DLAQLLAMLVQILGAEQCIEVGVYT---------------GYSSLALALVLPESGRLVAC 113

Query: 166 ERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE 225
           ERDA+SL+VAKKYY+ AGVSHKV +K GLA DSL++LILNGEA SYDFAF DAEK+M ++
Sbjct: 114 ERDAKSLDVAKKYYQLAGVSHKVDVKVGLAMDSLESLILNGEAGSYDFAFTDAEKKMNEK 173

Query: 226 YFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIG 285
           YFELLLQL+RVGG+IVIDNVLWHGKVAD +VND KT SIRNFN+ LMED+RVSISMVPIG
Sbjct: 174 YFELLLQLVRVGGLIVIDNVLWHGKVADPLVNDPKTFSIRNFNQKLMEDKRVSISMVPIG 233

Query: 286 DGMTICQKR 294
           DGMTIC+KR
Sbjct: 234 DGMTICRKR 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186194|ref|NP_001190157.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|332646771|gb|AEE80292.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 184/288 (63%), Positives = 221/288 (76%), Gaps = 28/288 (9%)

Query: 1   MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAH---- 56
           M++ L  NR +  + +T  T+    +  ++  L+          +   NC ++ A     
Sbjct: 1   MSTGLALNRCSVSVCRTAVTLLNRPTVSVARSLKF-------SRRLIGNCSIAPADPYVV 53

Query: 57  --DEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
             D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQLLAML
Sbjct: 54  ADDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQLLAML 113

Query: 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV 174
           VQ+L A+RCIEVGVYT               GYSSLA+ALVLPESGCLVACERD+ SLEV
Sbjct: 114 VQMLAAERCIEVGVYT---------------GYSSLAVALVLPESGCLVACERDSNSLEV 158

Query: 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI 234
           AK+YYE AGVSHKV +K GLAA+SLK++I NGE +SYDFAFVDA+KRMYQ+YFELLLQL+
Sbjct: 159 AKRYYELAGVSHKVNVKQGLAAESLKSMIQNGEGASYDFAFVDADKRMYQDYFELLLQLV 218

Query: 235 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMV 282
           RVGG+IV+DNVLWHG+V+D MVNDAKTISIRNFNK LM+D+RVSISMV
Sbjct: 219 RVGGVIVMDNVLWHGRVSDPMVNDAKTISIRNFNKKLMDDKRVSISMV 266

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460066|ref|XP_004147767.1| PREDICTED: tricin synthase 1-like [Cucumis sativus]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 193/300 (64%), Positives = 219/300 (73%), Gaps = 43/300 (14%)

Query: 23  KFHSFP---LSERLRLRPC----KFKT-KNQFTTNCCV--------------------SS 54
           +F S+P   L++   L P       KT K  F+ +CCV                    S+
Sbjct: 9   RFMSYPQNLLTKFSSLSPVTAFPSIKTVKGAFSCSCCVVCQFNLDDFSSKKRHLERVYST 68

Query: 55  AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
             + K+SNKQ ISV   LYDYIL NVREPEIL QLREETA MRGS+MQVSPDQAQLLAML
Sbjct: 69  NSNGKFSNKQFISVDSELYDYILSNVREPEILAQLREETASMRGSKMQVSPDQAQLLAML 128

Query: 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV 174
           VQILGA+RCIEVGVYT               GYSSLA+ALVLPESG LVAC+RD   LEV
Sbjct: 129 VQILGAKRCIEVGVYT---------------GYSSLAVALVLPESGRLVACDRDLECLEV 173

Query: 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI 234
           AK+YYE AGVSHKV ++HGLAAD+LK+LI NGEASSYDFAF+DAEKRM +EYFELLLQL+
Sbjct: 174 AKRYYELAGVSHKVDVRHGLAADTLKSLIANGEASSYDFAFIDAEKRMNEEYFELLLQLV 233

Query: 235 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
           RV G+IVIDNVLW+GKVAD MV+D  T SIR  NK +MED+RV ISMVPIGDGMTICQKR
Sbjct: 234 RVRGLIVIDNVLWYGKVADPMVDDKMTDSIRRLNKKIMEDDRVGISMVPIGDGMTICQKR 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.615	0.624	0.709	3.1e-67
TIGR_CMR|CBU_0924	222	CBU_0924 "O-methyltransferase"	0.721	0.954	0.397	1.1e-39
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.738	0.812	0.399	9.9e-39
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.710	0.730	0.386	1.1e-37
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.772	0.900	0.388	4.9e-37
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.704	0.892	0.385	2.9e-32
UNIPROTKB|A4IFU3	262	COMTD1 "COMTD1 protein" [Bos t	0.707	0.793	0.352	1.6e-31
UNIPROTKB|Q86VU5	262	COMTD1 "Catechol O-methyltrans	0.704	0.790	0.358	5.4e-31
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.738	0.931	0.356	5.4e-31
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.659	0.836	0.382	1.4e-30

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 139/196 (70%), Positives = 161/196 (82%)

Query:    99 SQMQVSPDQAQLLAMLVQILGAQRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPE 158
             SQ+QVSPDQAQLLAMLV+ILGA+RCIE                    GYSSLA+ALVLPE
Sbjct:   110 SQIQVSPDQAQLLAMLVEILGAKRCIEVGVYT---------------GYSSLAVALVLPE 154

Query:   159 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 218
             SG LVAC++DA +LEVAK+YYE AGVSHKV +KHGLAA+SL ++I NGE SSYDFAF+DA
Sbjct:   155 SGRLVACDKDANALEVAKRYYELAGVSHKVTVKHGLAAESLMSMIQNGEESSYDFAFLDA 214

Query:   219 EKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS 278
             +K MYQEYFE LL+L+RVGG+IVIDNVLWHG VAD  VND +TIS+RNFNK LM+D+RVS
Sbjct:   215 DKAMYQEYFESLLRLVRVGGVIVIDNVLWHGWVADSTVNDERTISLRNFNKKLMDDQRVS 274

Query:   279 ISMVPIGDGMTICQKR 294
             ISMV IGDGMTIC+KR
Sbjct:   275 ISMVSIGDGMTICRKR 290

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

TIGR_CMR|CBU_0924 CBU_0924 "O-methyltransferase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 91/229 (39%), Positives = 145/229 (63%)

Query:    68 VTPPLYDYILR-NVREPEILRQLREETAGMRGSQ-MQVSPDQAQLLAMLVQILGAQRCIE 125
             +TP LY Y+L+ ++REP +L +LREET     +  MQ +P+QAQLLA+LV+++ A++ I+
Sbjct:     8 LTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVID 67

Query:   126 XXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 185
                                 GYS++A+ L LP+ G L+ C+ D +S  +AK+Y+E+AG+S
Sbjct:    68 IGTFT---------------GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS 112

Query:   186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245
              K+ ++   A D+L  LI  G+A  YD  ++DA+K     Y+E  L+L+R GG+I +DNV
Sbjct:   113 DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNV 172

Query:   246 LWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
             L  G+VAD+         IR FN+ + +DERV + ++PIGDG+T+ +K+
Sbjct:   173 LRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK 221

GO:0008171 "O-methyltransferase activity" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 93/233 (39%), Positives = 144/233 (61%)

Query:    62 NKQVISVTPPLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
             +K +I  + PL+ YIL  ++RE  IL++LR  TA     +M VS DQAQL+A L++++ A
Sbjct:    49 HKSIIGKSSPLWQYILDHSLREHPILKKLRLLTAEYPWGKMMVSCDQAQLMANLIKLIKA 108

Query:   121 QRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180
             ++ IE                    GY++L++AL LP++G ++AC+ +    ++ K  ++
Sbjct:   109 KKVIEVGVLT---------------GYNALSMALALPDNGRVIACDINEDYAKIGKPLWK 153

Query:   181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGII 240
              AGV HK+ ++   A  +L  L+  GEA ++DFAF+DA+K  Y EY+E  L+LI+ GGII
Sbjct:   154 EAGVDHKIDLRIKPATQTLDELLAGGEAETFDFAFIDADKESYNEYYEKCLRLIKKGGII 213

Query:   241 VIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
              IDNVL  G V     +D  T SI + N+ L+ D RV+ISM+P+GDG+T+  K
Sbjct:   214 AIDNVLRCGMVLKPRKDDLATQSIHHLNEKLVRDARVNISMIPMGDGVTLVFK 266

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 87/225 (38%), Positives = 138/225 (61%)

Query:    71 PLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEXXXX 129
             PL  Y++ N +RE  +L +LR  T     + M V+ +QAQL+A L +++ A + IE    
Sbjct:    77 PLLQYVVNNSLREHPVLTKLRLRTMEDARNVMMVASEQAQLMANLAKLIEANKTIEIGLY 136

Query:   130 XXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 189
                             GY++L++ALV+PE+G +VACE +   +++ K ++  AGV +K+ 
Sbjct:   137 T---------------GYNALSLALVVPENGRVVACEINEDYVKIGKPFFAEAGVENKID 181

Query:   190 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 249
             I+   A ++L  L+  GEA  YDF F+DA+K+ Y+ Y+E  LQL+R GGI+ IDNVLW G
Sbjct:   182 IRLKPAVETLDELLSAGEAGMYDFVFIDADKKNYETYYEKSLQLVRKGGIVAIDNVLWGG 241

Query:   250 KVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
             +V +   +D  + +I   NK L +DER+ +SM+ +GDG+T+  KR
Sbjct:   242 RVINPAEDDLSSQAIDKLNKKLHKDERIDLSMLTVGDGLTLAIKR 286

GO:0008171 "O-methyltransferase activity" evidence=IEA

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 99/255 (38%), Positives = 141/255 (55%)

Query:    52 VSSAHDEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQA 108
             + +AH +  S  + +  +  LY Y+L      REPE +R LR  T   +   MQ S D+A
Sbjct:    11 IKNAHSDIDSTNKTLLKSDALYKYVLDTTVLPREPECMRDLRLITDKHQWGFMQSSADEA 70

Query:   109 QLLAMLVQILGAQRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERD 168
             QLL ML+++ GA+R IE                    GYS LA AL LPE G +VA + D
Sbjct:    71 QLLGMLLKMAGAKRTIEVGVFT---------------GYSLLATALALPEDGKVVAIDPD 115

Query:   169 ARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN----GEASSYDFAFVDAEKRMYQ 224
               S E+ + + E+AGV+HKV  + G   + L  L+      G  +++DFAFVDA+K  Y 
Sbjct:   116 RESYEIGRPFLEKAGVAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYV 175

Query:   225 EYFELLLQLIRVGGIIVIDNVLWHGKVA---DQMVNDAK---TISIRNFNKNLMEDERVS 278
             +Y E LLQL+RVGG IV DN LW G VA   D  ++D     +++IR+ N  L  D R+ 
Sbjct:   176 KYHEQLLQLVRVGGHIVYDNTLWAGTVALPPDTPLSDLDRRFSVAIRDLNSRLAADPRID 235

Query:   279 ISMVPIGDGMTICQK 293
             +  + I DG+TIC++
Sbjct:   236 VCQLAIADGITICRR 250

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 89/231 (38%), Positives = 124/231 (53%)

Query:    72 LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEXXX 128
             LY YIL      REPE+LR+LR  T     + M  +PD  QL+ ML+ ++ A++ IE   
Sbjct:    15 LYKYILETSVYPREPEVLRELRNITHNHPQAGMATAPDAGQLMGMLLNLVNARKTIEVGV 74

Query:   129 XXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 188
                              GYS L  AL LPE G ++A + +  S E+     ++AGV HK+
Sbjct:    75 FT---------------GYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKAGVEHKI 119

Query:   189 KIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247
               K   A  +L  L+ N      +DFAFVDA+K  Y  Y E L++LI+VGGIIV DN LW
Sbjct:   120 DFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIVYDNTLW 179

Query:   248 HGKVADQMVNDAK-TISIRN----FNKNLMEDERVSISMVPIGDGMTICQK 293
              G VA+   +  +  I ++      NK L  D+RV IS   +GDG+TIC++
Sbjct:   180 GGSVAEPDSSTPEWRIEVKKATLELNKKLSADQRVQISQAALGDGITICRR 230

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

UNIPROTKB|A4IFU3 COMTD1 "COMTD1 protein" [Bos taurus (taxid:9913)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 79/224 (35%), Positives = 126/224 (56%)

Query:    71 PLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEXXXX 129
             PL+ Y+L R++RE   LR LR  T         ++ +QAQLLA L +++ A++ ++    
Sbjct:    53 PLWQYLLSRSIREHPALRSLRLLTLEQPQGDSMMTREQAQLLANLARLIKAKKALDLGTF 112

Query:   130 XXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 189
                             GYS+LA+AL LP +GC+V CE DA   E+ +  + +A   HK+ 
Sbjct:   113 T---------------GYSALALALALPPAGCVVTCEVDAGPPELGRPLWRQAEEEHKID 157

Query:   190 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 249
             ++   A ++L  L+  GEA ++D A VDA+K     Y+E  LQL+R GG++ + +VL  G
Sbjct:   158 LRLKPALETLDELLAAGEAGTFDVAVVDADKENCTAYYERCLQLLRPGGVLAVLSVLCQG 217

Query:   250 KVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
             +V      D     +RN N+ ++ D RV IS++P+GDG+T+  K
Sbjct:   218 EVLQPKPQDKAAQCVRNLNERILRDARVHISLLPLGDGLTLAFK 261

GO:0005739 "mitochondrion" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

UNIPROTKB|Q86VU5 COMTD1 "Catechol O-methyltransferase domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 80/223 (35%), Positives = 123/223 (55%)

Query:    72 LYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEXXXXX 130
             L+ Y+L R++RE   LR LR  T         ++ +QAQLLA L +++ A++ ++     
Sbjct:    54 LWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFT 113

Query:   131 XXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 190
                            GYS+LA+AL LP  G +V CE DA+  E+ +  + +A   HK+ +
Sbjct:   114 ---------------GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDL 158

Query:   191 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 250
             +   A ++L  L+  GEA ++D A VDA+K     Y+E  LQL+R GGI+ +  VLW GK
Sbjct:   159 RLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGK 218

Query:   251 VADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
             V      D     +RN N+ +  D RV IS++P+GDG+T+  K
Sbjct:   219 VLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 261

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 89/250 (35%), Positives = 135/250 (54%)

Query:    57 DEKYSNKQVISVTPPLYDYILRNV---REPEILRQLREETAGMRG--SQMQVSPDQAQLL 111
             D +  +K ++  +  L  YI+      RE E+L++LRE T    G  S+M V  D++  L
Sbjct:     2 DGRLPDKGILK-SEALKQYIMETTAYPREHELLKELREATIQRYGNLSEMGVPVDESLFL 60

Query:   112 AMLVQILGAQRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARS 171
             +MLV+I+ A+  IE                    GYS   +AL LPE G + A + D   
Sbjct:    61 SMLVKIINAKNTIEIGVFT---------------GYSLFTVALALPEDGRITAIDIDQAG 105

Query:   172 LEVAKKYYERAGVSHKVKIKHGLAADSLKAL--ILNGEASSYDFAFVDAEKRMYQEYFEL 229
               +  ++ ++AGV HK+     + +D+++ L  +LNGE   YDFAFVDA+K  Y  + E 
Sbjct:   106 YNLGLEFMKKAGVDHKINF---IQSDAVRGLDQLLNGEKQEYDFAFVDADKTNYVYFLEK 162

Query:   230 LLQLIRVGGIIVIDNVLWHGKVADQMVND------AKTISIRNFNKNLMEDERVSISMVP 283
             LL+L++VGGII  DN LW G +  Q  N+      A   ++  FNK L  D RV I+ + 
Sbjct:   163 LLKLVKVGGIIAFDNTLWFGTLI-QKENEVPGHMRAYREALLEFNKILARDPRVEIAQIS 221

Query:   284 IGDGMTICQK 293
             IGDG+T+C++
Sbjct:   222 IGDGLTLCRR 231

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 85/222 (38%), Positives = 123/222 (55%)

Query:    81 REPEILRQLREETAGMRG--SQMQVSPDQAQLLAMLVQILGAQRCIEXXXXXXXXXXXXX 138
             RE E+L++LR+ T    G  S+M+V  D+   L+MLV+I+ A+  IE             
Sbjct:    28 REHELLKELRKATVQKYGNLSEMEVPVDEGHFLSMLVKIMNAKNTIEIGVFT-------- 79

Query:   139 XXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198
                    GYS L  AL LPE G + A + D  + EV  ++ ++AGV HK+   H   +D 
Sbjct:    80 -------GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIH---SDG 129

Query:   199 LKALI-LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD---- 253
             LKAL  L  +   +DFAF DA+K  Y  + E LL+L++VGGII  DN LW G VA+    
Sbjct:   130 LKALDQLVNDKCEFDFAFADADKSSYVNFHERLLKLVKVGGIIAFDNTLWFGFVAEDEDG 189

Query:   254 --QMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
               + + + +   I  FNK L  D RV +S + IGDG+T+C++
Sbjct:   190 VPEHMREYRAALIE-FNKKLALDPRVEVSQISIGDGITLCRR 230

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: CAML4 trans-caffeoyl-coa 3-o-methyltransferase-like protein (228 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	294
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	1e-150
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	9e-82
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	3e-56
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	3e-50
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	1e-44
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	7e-13
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	7e-07
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	6e-06
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-05
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	9e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	0.001

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  422 bits (1086), Expect = e-150
 Identities = 199/304 (65%), Positives = 234/304 (76%), Gaps = 36/304 (11%)

Query: 1   MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSS------ 54
           M++ L  NR +F + +T  T+    +  +   L+           F+     +       
Sbjct: 1   MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLK-----------FSRRLIGNCSIAPAD 49

Query: 55  ----AHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQL 110
               A+D+KY NKQVIS+TP LYDY+L NVREP+ILRQLREET+ MRGSQMQVSPDQAQL
Sbjct: 50  PVVVANDDKYGNKQVISLTPRLYDYVLSNVREPKILRQLREETSKMRGSQMQVSPDQAQL 109

Query: 111 LAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR 170
           LAMLVQILGA+RCIEVGVYT               GYSSLA+ALVLPESGCLVACERD+ 
Sbjct: 110 LAMLVQILGAERCIEVGVYT---------------GYSSLAVALVLPESGCLVACERDSN 154

Query: 171 SLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELL 230
           SLEVAK+YYE AGVSHKV +KHGLAA+SLK++I NGE SSYDFAFVDA+KRMYQ+YFELL
Sbjct: 155 SLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELL 214

Query: 231 LQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTI 290
           LQL+RVGG+IV+DNVLWHG+VAD +VNDAKTISIRNFNK LM+D+RVSISMVPIGDGMTI
Sbjct: 215 LQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTI 274

Query: 291 CQKR 294
           C+KR
Sbjct: 275 CRKR 278

Length = 278

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  244 bits (626), Expect = 9e-82
 Identities = 95/215 (44%), Positives = 140/215 (65%), Gaps = 15/215 (6%)

Query: 80  VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTS 139
           VRE EIL++LRE TA +  S MQ+SP++ Q L+ML++++GA+R +E+GV+T         
Sbjct: 5   VREHEILKELREATAKLPLSPMQISPEEGQFLSMLLKLIGAKRTLEIGVFT--------- 55

Query: 140 ILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199
                 GYS LA AL LPE G + AC+ D  + E+   + ++AGV+ K+  + G A  +L
Sbjct: 56  ------GYSLLATALALPEDGKITACDIDPEAYEIGLPFIQKAGVADKISFRLGDALPTL 109

Query: 200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA 259
           + L+ +     +DF FVDA+K  Y  Y+E LL+L++VGG+I IDN LW GKVA+      
Sbjct: 110 EELVKDKPLGEFDFIFVDADKSNYPNYYERLLELVKVGGLIAIDNTLWFGKVAEPDDEVP 169

Query: 260 KTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
           KT+ +R  NK L  DERV ISM+P+GDG+T+C++ 
Sbjct: 170 KTVRVRELNKLLASDERVEISMLPVGDGITLCRRI 204

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  180 bits (458), Expect = 3e-56
 Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 24/237 (10%)

Query: 62  NKQVISVTPPLYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
            +++ ++   LYDY+      EP  L    EE A   G  +   P+   LL +L ++ G 
Sbjct: 2   TQRMPNMDEDLYDYLEALIPGEPPALLAELEEFARENGVPIID-PETGALLRLLARLSGP 60

Query: 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180
           +R +E+G                  GYS+L +AL LP+ G L   ERD    E+A++   
Sbjct: 61  KRILEIGTAI---------------GYSALWMALALPDDGRLTTIERDEERAEIARENLA 105

Query: 181 RAGVSHKVKIKHGL-AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI 239
            AGV  ++++  G  A D L  L       S+D  F+DA+K  Y EY E  L L+R GG+
Sbjct: 106 EAGVDDRIELLLGGDALDVLSRL----LDGSFDLVFIDADKADYPEYLERALPLLRPGGL 161

Query: 240 IVIDNVLWHGKVADQMVNDAKTI--SIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
           IV DNVL+ G+VAD  + DA+T    +R+FN  L+ED R    ++P+GDG+ + +KR
Sbjct: 162 IVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR 218

Length = 219

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  165 bits (419), Expect = 3e-50
 Identities = 87/220 (39%), Positives = 126/220 (57%), Gaps = 22/220 (10%)

Query: 81  REPEILRQLREETAGMRG--SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYST 138
           RE E+L++LRE T    G  S+M+V  D+   L+MLV+I+ A+  +E+GV+T        
Sbjct: 28  REHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFT-------- 79

Query: 139 SILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198
                  GYS L  AL LPE G + A + D  + EV  ++ ++AGV HK+      A  +
Sbjct: 80  -------GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA 132

Query: 199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA---DQM 255
           L  L+ N     +DFAFVDA+K  Y  + E LL+L++VGGII  DN LW G VA   D++
Sbjct: 133 LDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEV 192

Query: 256 VNDAKTI--SIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
               +    ++  FNK L  D RV IS + IGDG+T+C++
Sbjct: 193 PEHMRAYRKALLEFNKLLASDPRVEISQISIGDGVTLCRR 232

Length = 234

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  151 bits (383), Expect = 1e-44
 Identities = 89/234 (38%), Positives = 133/234 (56%), Gaps = 29/234 (12%)

Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
           LY YIL      REPE +++LRE TA    + M  S D+ Q L ML++++ A+  +E+GV
Sbjct: 29  LYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGV 88

Query: 129 YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 188
           YT               GYS LA AL LPE G ++A + +  + E+     ++AGV+HK+
Sbjct: 89  YT---------------GYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKI 133

Query: 189 KIKHGLAADSLKALILNGEA-SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247
             + G A   L  +I +G+   ++DF FVDA+K  Y  Y + L+ L++VGG+I  DN LW
Sbjct: 134 DFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLW 193

Query: 248 HGKVADQMVNDA---KTIS-IRNF----NKNLMEDERVSISMVPIGDGMTICQK 293
           +G V      DA   K +   R+F    NK L  D R+ I M+P+GDG+T+C++
Sbjct: 194 NGSVVAP--PDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRR 245

Length = 247

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 63.4 bits (155), Expect = 7e-13
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 25/126 (19%)

Query: 124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYER 181
           +E+GVY               SG S+L +A  L ++G   L + +        A     +
Sbjct: 1   VEIGVY---------------SGVSTLWLAQALKDNGLGRLYSIDPWPG--AEAGANLRK 43

Query: 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA--EKRMYQEYFELLLQLIRVGGI 239
           AG++ +V++  G + ++L  L       S D  F+D            EL L L+  GGI
Sbjct: 44  AGLADRVRLLRGDSLEALARL----PDGSIDLLFIDGDHTYEAVLADLELWLPLLAPGGI 99

Query: 240 IVIDNV 245
           IV  ++
Sbjct: 100 IVFHDI 105

This family appears to be a methyltransferase domain. Length = 105

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 46.7 bits (111), Expect = 7e-07
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 10/107 (9%)

Query: 140 ILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 199
           +L L  G  +LA+AL       +   +    +LE+A+K    A ++  V++  G   D+ 
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKG---DAE 57

Query: 200 KALILNGEASSYDFAFVD----AEKRMYQEYFELLLQLIRVGGIIVI 242
           +      E  S+D    D            + E   +L++ GG++V+
Sbjct: 58  ELPPEADE--SFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 145 SGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 204
           +G  ++  +L++ E+G + A ++D +++ + ++  E+ GV + + +  G A +     IL
Sbjct: 51  TGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE-----IL 105

Query: 205 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246
                 +D  F+       +E      ++I+ GG IVID +L
Sbjct: 106 FTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAIL 147

Length = 198

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 10/99 (10%)

Query: 145 SGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 203
           +G  ++ +A + P  G  +   +     LE+A++  +   +  ++    G A D+L  L 
Sbjct: 12  TGSLAIELARLFP--GARVTGVDLSPEMLELARENAKL-ALGPRITFVQGDAPDALDLL- 67

Query: 204 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242
                  +D  F+        E  + L  L++ GG +V+
Sbjct: 68  -----EGFDAVFIGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 25/148 (16%), Positives = 51/148 (34%), Gaps = 29/148 (19%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL 156
           R +Q+ + P  A  +   + I    R +E G                 SG  +  +A  +
Sbjct: 73  RRTQI-IYPKDAGYIVARLGISPGSRVLEAGTG---------------SGALTAYLARAV 116

Query: 157 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 216
              G +   E      + A++     G+  +V +K G   +         +    D  F+
Sbjct: 117 GPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG-------IDEEDVDAVFL 169

Query: 217 DAEKRMYQ--EYFELLLQLIRVGGIIVI 242
           D    +       E +   ++ GG++V+
Sbjct: 170 D----LPDPWNVLEHVSDALKPGGVVVV 193

Length = 256

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 19/119 (15%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 145 SGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 204
           +GY +  +A  L     +V  +    ++E AK+  ++ G    V+   G   D  +   L
Sbjct: 14  TGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-NVEFIQG---DIEELPQL 69

Query: 205 NGEASSYDFAFVDAEK-RMY--QEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK 260
             E +S+D    +     +    +  E ++++++ GG++++ + +   ++   + +  +
Sbjct: 70  QLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSELPALLEDLER 128

This family appears to be have methyltransferase activity. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
PLN02476	278	O-methyltransferase	100.0
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	100.0
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.88
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.87
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.72
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.64
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.58
PRK04457	262	spermidine synthase; Provisional	99.58
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.56
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.56
PLN03075	296	nicotianamine synthase; Provisional	99.55
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.54
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.54
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.54
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.52
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.5
PRK07402	196	precorrin-6B methylase; Provisional	99.5
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.49
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.48
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.47
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.47
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.46
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.46
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.45
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.45
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.45
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.43
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.42
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.42
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.42
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.4
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.4
COG4123	248	Predicted O-methyltransferase [General function pr	99.4
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.4
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.38
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.38
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.37
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.36
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.36
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.34
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.34
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.34
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.34
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.34
PRK00811	283	spermidine synthase; Provisional	99.34
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.34
PRK01581	374	speE spermidine synthase; Validated	99.34
PLN02244	340	tocopherol O-methyltransferase	99.33
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.33
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.33
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.33
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.32
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.32
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.32
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.3
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.29
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.29
PLN02366	308	spermidine synthase	99.28
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.28
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.28
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.28
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.27
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.27
PRK11207	197	tellurite resistance protein TehB; Provisional	99.26
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.26
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.26
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.26
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.25
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.25
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.25
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.25
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.24
PRK14968	188	putative methyltransferase; Provisional	99.24
PRK04266	226	fibrillarin; Provisional	99.24
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.24
PRK08317	241	hypothetical protein; Provisional	99.24
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.24
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.24
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.23
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.22
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.2
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.2
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.19
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.19
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.18
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.18
PRK14967	223	putative methyltransferase; Provisional	99.18
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.18
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.17
COG2890	280	HemK Methylase of polypeptide chain release factor	99.16
PRK12335	287	tellurite resistance protein TehB; Provisional	99.16
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.16
PLN02823	336	spermine synthase	99.15
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.15
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.15
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.14
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.14
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.11
PLN02336	475	phosphoethanolamine N-methyltransferase	99.11
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.09
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.09
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.09
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.08
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.08
PRK03612	521	spermidine synthase; Provisional	99.08
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.08
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.07
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.07
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.07
PRK06922	677	hypothetical protein; Provisional	99.06
TIGR03438	301	probable methyltransferase. This model represents	99.06
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.05
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.05
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.02
PLN02490	340	MPBQ/MSBQ methyltransferase	99.01
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.01
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.01
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.01
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.01
PTZ00146	293	fibrillarin; Provisional	99.0
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.0
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.0
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.98
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.97
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.97
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.97
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.96
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.96
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.96
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.95
PLN02336	475	phosphoethanolamine N-methyltransferase	98.95
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.94
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.94
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.93
TIGR00438	188	rrmJ cell division protein FtsJ.	98.93
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.93
COG2520	341	Predicted methyltransferase [General function pred	98.93
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.92
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.92
KOG2904	328	consensus Predicted methyltransferase [General fun	98.91
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.91
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.9
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.9
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	98.9
KOG1271	227	consensus Methyltransferases [General function pre	98.89
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.88
PLN02672	1082	methionine S-methyltransferase	98.88
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.87
PHA03412	241	putative methyltransferase; Provisional	98.84
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.82
PRK06202	232	hypothetical protein; Provisional	98.82
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.79
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.78
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.77
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.75
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.75
KOG4300	252	consensus Predicted methyltransferase [General fun	98.74
PRK05785	226	hypothetical protein; Provisional	98.71
COG2521	287	Predicted archaeal methyltransferase [General func	98.7
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.7
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.7
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.69
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.69
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.69
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.66
PHA03411	279	putative methyltransferase; Provisional	98.62
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.62
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.62
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.61
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.57
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.55
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.54
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.53
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.49
KOG2899	288	consensus Predicted methyltransferase [General fun	98.48
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.46
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.45
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.44
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.42
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.42
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.41
PRK00536	262	speE spermidine synthase; Provisional	98.39
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.39
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.38
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.35
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.33
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.32
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.28
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.25
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.22
KOG2730	263	consensus Methylase [General function prediction o	98.22
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.2
KOG2361	264	consensus Predicted methyltransferase [General fun	98.19
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.19
PRK10742	250	putative methyltransferase; Provisional	98.15
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.15
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.14
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.13
KOG3010	261	consensus Methyltransferase [General function pred	98.12
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.1
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.06
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.05
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.02
PRK04148	134	hypothetical protein; Provisional	97.99
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.99
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	97.98
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.97
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.94
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.94
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.92
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.9
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.89
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.87
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.84
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.79
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.78
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.76
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.73
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.71
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.69
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.69
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.68
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.67
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.66
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.64
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.61
PF13679	141	Methyltransf_32: Methyltransferase domain	97.59
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.57
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.51
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.5
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.5
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.49
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.45
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.35
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.33
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	97.28
COG4076	252	Predicted RNA methylase [General function predicti	97.27
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.18
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.15
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.14
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.13
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.09
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.08
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.95
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.94
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.93
COG0286	489	HsdM Type I restriction-modification system methyl	96.91
COG3897	218	Predicted methyltransferase [General function pred	96.81
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.8
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.76
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	96.74
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.7
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.7
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.58
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.46
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.45
PHA01634	156	hypothetical protein	96.4
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.38
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.34
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.24
KOG3201	201	consensus Uncharacterized conserved protein [Funct	96.21
KOG3115	249	consensus Methyltransferase-like protein [General	96.03
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	95.98
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	95.89
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.83
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.83
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.82
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.79
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.73
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	95.69
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.67
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.52
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.5
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.48
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.41
COG4301	321	Uncharacterized conserved protein [Function unknow	95.37
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	95.34
KOG1227	351	consensus Putative methyltransferase [General func	95.21
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	95.14
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.06
KOG2940	325	consensus Predicted methyltransferase [General fun	94.97
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.84
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.82
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.69
PRK11524	284	putative methyltransferase; Provisional	94.68
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	94.64
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.63
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	94.59
PRK11524	284	putative methyltransferase; Provisional	94.58
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	94.49
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	94.38
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	94.36
PLN02740	381	Alcohol dehydrogenase-like	94.12
PRK13699	227	putative methylase; Provisional	94.1
PLN02827	378	Alcohol dehydrogenase-like	94.1
COG4798	238	Predicted methyltransferase [General function pred	93.98
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	93.83
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	93.74
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	93.66
KOG2671	421	consensus Putative RNA methylase [Replication, rec	93.62
PRK13699	227	putative methylase; Provisional	93.62
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	93.37
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	93.35
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.21
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	93.19
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	93.15
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	93.11
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	92.82
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	92.81
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	92.72
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	92.66
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	92.62
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.62
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	92.62
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.48
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	92.48
KOG4058	199	consensus Uncharacterized conserved protein [Funct	92.07
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	91.95
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	91.92
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	91.78
KOG2078	495	consensus tRNA modification enzyme [RNA processing	91.75
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	91.72
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.62
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	91.6
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	91.5
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	91.29
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	91.24
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	91.05
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	91.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	90.91
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	90.86
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	90.83
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	90.4
PLN02586	360	probable cinnamyl alcohol dehydrogenase	90.13
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	90.11
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	89.92
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	89.9
PRK08114	395	cystathionine beta-lyase; Provisional	89.83
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	89.81
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	89.8
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	89.6
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	89.5
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	89.33
COG2961	279	ComJ Protein involved in catabolism of external DN	89.29
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	89.27
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.21
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	89.14
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	88.61
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	88.52
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	88.39
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	88.08
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	88.05
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	88.04
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	88.03
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	88.02
KOG2360	413	consensus Proliferation-associated nucleolar prote	88.02
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	87.99
KOG2912	419	consensus Predicted DNA methylase [Function unknow	87.98
COG3129	292	Predicted SAM-dependent methyltransferase [General	87.71
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	87.7
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.69
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	87.66
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	87.1
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.99
PLN02353	473	probable UDP-glucose 6-dehydrogenase	86.9
KOG1331	293	consensus Predicted methyltransferase [General fun	86.77
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	86.74
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	86.62
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	86.59
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	86.53
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	86.41
PRK07417	279	arogenate dehydrogenase; Reviewed	86.31
PLN02178	375	cinnamyl-alcohol dehydrogenase	86.12
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	85.94
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	85.87
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	85.55
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	85.51
PRK10083	339	putative oxidoreductase; Provisional	85.38
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	85.37
PLN02514	357	cinnamyl-alcohol dehydrogenase	85.15
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	84.9
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.69
COG4017	254	Uncharacterized protein conserved in archaea [Func	84.57
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	84.57
PRK08507	275	prephenate dehydrogenase; Validated	84.4
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	84.1
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	84.04
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	84.0
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	83.96
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	83.96
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	83.81
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	83.72
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	83.6
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	83.59
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	83.42
PRK09028	394	cystathionine beta-lyase; Provisional	83.36
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	83.31
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	83.31
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	83.26
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	83.18
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.09
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	82.98
PF00072	112	Response_reg: Response regulator receiver domain;	82.87
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	82.8
PRK08064	390	cystathionine beta-lyase; Provisional	82.74
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	82.67
PRK09496	453	trkA potassium transporter peripheral membrane com	82.66
KOG2352	482	consensus Predicted spermine/spermidine synthase [	82.65
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	82.64
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	82.6
COG1568	354	Predicted methyltransferases [General function pre	82.55
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	82.55
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	82.5
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	82.33
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	81.94
PRK06940	275	short chain dehydrogenase; Provisional	81.8
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	81.65
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	81.63
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	81.5
PRK08247	366	cystathionine gamma-synthase; Reviewed	81.28
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	81.25
PRK05939	397	hypothetical protein; Provisional	81.09
PLN02256	304	arogenate dehydrogenase	81.0
PRK07671	377	cystathionine beta-lyase; Provisional	80.99
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	80.84
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	80.78
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	80.77
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	80.76
PRK08306	296	dipicolinate synthase subunit A; Reviewed	80.46
PRK08324	681	short chain dehydrogenase; Validated	80.45
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	80.43
PRK05967	395	cystathionine beta-lyase; Provisional	80.42
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	80.4
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	80.32
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	80.23
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	80.18
COG0863	302	DNA modification methylase [DNA replication, recom	80.16
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	80.05

>PLN02476 O-methyltransferase

Probab=100.00  E-value=9.4e-48  Score=357.09  Aligned_cols=278  Identities=72%  Similarity=1.098  Sum_probs=243.0

Q ss_pred             CchhhhhhhhhhhhhcccccccccCcchhhHHhhcccccccccCccccccccccccccccccccccCCChhHHHHHHhcC
Q 022597            1 MASSLVANRFAFVLLKTEKTVAKFHSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNV   80 (294)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~   80 (294)
                      |+..++-||-.|+..+...+.-..+.++.-+.+|..++-. ..-+...+...|.+.+|+|++++..+.++.+++|+.+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Y~~~~~   79 (278)
T PLN02476          1 MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLKFSRRLI-GNCSIAPADPVVVANDDKYGNKQVISLTPRLYDYVLSNV   79 (278)
T ss_pred             CcchhhhhhhhhhhhhhhheeecCCccchhhhhHHHHHhh-cCCCCCCCCceEEecchhhcccCcccchHHHHHHHHhcC
Confidence            5667888999988776544443334444444333322111 112223345788999999999999999999999999988


Q ss_pred             CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc
Q 022597           81 REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG  160 (294)
Q Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~  160 (294)
                      ++++.|+++++++..+..+.|.++|+++++|.++++..++++|||||||+               ||++++++.++++++
T Consensus        80 ~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~t---------------GySal~lA~al~~~G  144 (278)
T PLN02476         80 REPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYT---------------GYSSLAVALVLPESG  144 (278)
T ss_pred             CCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCC---------------CHHHHHHHHhCCCCC
Confidence            88999999999999887778999999999999999999999999999999               999999999998889


Q ss_pred             EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEE
Q 022597          161 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGII  240 (294)
Q Consensus       161 ~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~i  240 (294)
                      +|+++|.+++.++.|+++++++|+.++|+++.||+.+.++.+..++..++||+||+|++++.|.+||+.+.++|+|||+|
T Consensus       145 ~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvI  224 (278)
T PLN02476        145 CLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVI  224 (278)
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEE
Confidence            99999999999999999999999999999999999999988765544578999999999999999999999999999999


Q ss_pred             EEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          241 VIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       241 vid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      ++||++|+|.|.++...++++.++|+||+.+.+||+++++++|+|||++|++||
T Consensus       225 V~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigDGl~i~~K~  278 (278)
T PLN02476        225 VMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRKR  278 (278)
T ss_pred             EEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence            999999999999998888889999999999999999999999999999999996

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=2.2e-43  Score=315.39  Aligned_cols=200  Identities=45%  Similarity=0.784  Sum_probs=186.7

Q ss_pred             CCChHHHHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC
Q 022597           80 VREPEILRQLREETAGMR-GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE  158 (294)
Q Consensus        80 ~~~~~~L~~~~~~~~~~~-~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~  158 (294)
                      +.+++.|+++++.+.... .+.|.++|++|++|.++++..++++|||||||+               |||++++++++|+
T Consensus         5 ~~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~---------------GySal~la~~l~~   69 (205)
T PF01596_consen    5 VREPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFT---------------GYSALWLAEALPE   69 (205)
T ss_dssp             TCSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTT---------------SHHHHHHHHTSTT
T ss_pred             cCCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEecccc---------------ccHHHHHHHhhcc
Confidence            568999999999998765 567889999999999999999999999999999               9999999999998


Q ss_pred             CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCe
Q 022597          159 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGG  238 (294)
Q Consensus       159 ~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG  238 (294)
                      +++|+++|.+++..+.|+++++++|+.++|+++.||+.+.++.+..+++.++||+||+|++|..|..||+.+.++|+|||
T Consensus        70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~gg  149 (205)
T PF01596_consen   70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGG  149 (205)
T ss_dssp             TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEE
T ss_pred             cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCe
Confidence            99999999999999999999999999999999999999999998766556799999999999999999999999999999


Q ss_pred             EEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          239 IIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       239 ~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      +|++||++|+|.|.++...++.+.++++||+.+.+||+|+++++|+|||++|++||
T Consensus       150 vii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l~~K~  205 (205)
T PF01596_consen  150 VIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPIGDGLTLARKR  205 (205)
T ss_dssp             EEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred             EEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence            99999999999999998888888899999999999999999999999999999997

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.9e-43  Score=315.37  Aligned_cols=219  Identities=53%  Similarity=0.891  Sum_probs=207.5

Q ss_pred             ccccccCCChhHHHHHHhc---CCChHHHHHHHHHHHcC--CCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccc
Q 022597           61 SNKQVISVTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSS  135 (294)
Q Consensus        61 ~~~~~~~l~~~l~~Y~~~~---~~~~~~L~~~~~~~~~~--~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~  135 (294)
                      ..++.+..++.+++|+...   .+|++.|+++++++..+  +++.|.++|++++++.+++++.+++++||||++|     
T Consensus        10 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfT-----   84 (237)
T KOG1663|consen   10 PDKRLILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFT-----   84 (237)
T ss_pred             cchhcccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEeccc-----
Confidence            3444677788899999876   67899999999999887  5889999999999999999999999999999999     


Q ss_pred             cccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEE
Q 022597          136 YSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF  215 (294)
Q Consensus       136 ~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vf  215 (294)
                                |||++.+|.++|++|+|+++|+|++..+.+.+..+.+|+.++|++++|++.+.+.+++.+++.++|||+|
T Consensus        85 ----------GySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF  154 (237)
T KOG1663|consen   85 ----------GYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF  154 (237)
T ss_pred             ----------CHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEE
Confidence                      9999999999999999999999999999999999999999999999999999999999999899999999


Q ss_pred             EcCCccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCc-chHHHH---HHHHHhhhCCCeEEEEeecCCceEEE
Q 022597          216 VDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA-KTISIR---NFNKNLMEDERVSISMVPIGDGMTIC  291 (294)
Q Consensus       216 iD~~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~-~~~~ir---~f~~~l~~~~~~~~~~lp~gdGl~i~  291 (294)
                      +|++|..|..|++.+.++||+||+|++||++|+|.|++|..+.+ ++..+|   +||+.|+.||+++.+++|+|||+++|
T Consensus       155 vDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG~~i~  234 (237)
T KOG1663|consen  155 VDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDGITIC  234 (237)
T ss_pred             EccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCceeee
Confidence            99999999999999999999999999999999999999987666 889999   99999999999999999999999999


Q ss_pred             EEC
Q 022597          292 QKR  294 (294)
Q Consensus       292 ~k~  294 (294)
                      +|+
T Consensus       235 ~k~  237 (237)
T KOG1663|consen  235 RKR  237 (237)
T ss_pred             ccC
Confidence            986

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=4.2e-41  Score=308.32  Aligned_cols=216  Identities=39%  Similarity=0.691  Sum_probs=195.2

Q ss_pred             cccCCChhHHHHHHhc---CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEcccccccccccccc
Q 022597           64 QVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSI  140 (294)
Q Consensus        64 ~~~~l~~~l~~Y~~~~---~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~  140 (294)
                      +..+.++.+++|+.++   .++++.|.++++++..+..+.|.++|+++++|..+++..++++|||||+++          
T Consensus        21 ~~~~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~----------   90 (247)
T PLN02589         21 KSLLQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYT----------   90 (247)
T ss_pred             ccccCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChh----------
Confidence            3445678999999774   467899999999998887677899999999999999999999999999999          


Q ss_pred             ccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCC-CCceeEEEEcCC
Q 022597          141 LSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE-ASSYDFAFVDAE  219 (294)
Q Consensus       141 ~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~-~~~fD~vfiD~~  219 (294)
                           |||+++++.+++++++|+++|.+++..+.|+++++++|+.++|+++.|++.+.++.+...+. .++||+||+|++
T Consensus        91 -----GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad  165 (247)
T PLN02589         91 -----GYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD  165 (247)
T ss_pred             -----hHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence                 99999999999889999999999999999999999999999999999999999998764331 368999999999


Q ss_pred             ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCc-c-----hHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 022597          220 KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA-K-----TISIRNFNKNLMEDERVSISMVPIGDGMTICQK  293 (294)
Q Consensus       220 ~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~-~-----~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k  293 (294)
                      |..|..||+.+.++|+|||+|++||++|+|.|.++...+. .     ..++|+||+.+.+||+|+++++|+|||+++++|
T Consensus       166 K~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDGl~l~~k  245 (247)
T PLN02589        166 KDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRR  245 (247)
T ss_pred             HHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCccEEEEE
Confidence            9999999999999999999999999999999988853322 1     136889999999999999999999999999998


Q ss_pred             C
Q 022597          294 R  294 (294)
Q Consensus       294 ~  294 (294)
                      +
T Consensus       246 ~  246 (247)
T PLN02589        246 I  246 (247)
T ss_pred             e
Confidence            5

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=5.6e-39  Score=291.93  Aligned_cols=213  Identities=41%  Similarity=0.675  Sum_probs=193.1

Q ss_pred             CCChhHHHHHHhc---CCChHHHHHHHHHHHcCC--CCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccc
Q 022597           67 SVTPPLYDYILRN---VREPEILRQLREETAGMR--GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSIL  141 (294)
Q Consensus        67 ~l~~~l~~Y~~~~---~~~~~~L~~~~~~~~~~~--~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~  141 (294)
                      +.++.+++|+.+.   .++++.|.++++++..+.  .+.|.++|+++++|..+++..++++|||+|||+           
T Consensus        11 ~~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~-----------   79 (234)
T PLN02781         11 LKSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFT-----------   79 (234)
T ss_pred             CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcc-----------
Confidence            4567899999764   468999999999988662  367899999999999999999999999999999           


Q ss_pred             cCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc
Q 022597          142 SLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR  221 (294)
Q Consensus       142 ~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~  221 (294)
                          |+++++++.+++++++|+++|.++++++.|+++++++|+.++++++.||+.+.++.+..+++.++||+||+|++++
T Consensus        80 ----G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~  155 (234)
T PLN02781         80 ----GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKP  155 (234)
T ss_pred             ----cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHH
Confidence                9999999999988899999999999999999999999999999999999999988876544457899999999999


Q ss_pred             chHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCc-----chHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          222 MYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA-----KTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       222 ~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~-----~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      .|..+++.+.++|+|||++++||++|+|.|.++....+     .+.++++||+.+.++|+++++++|+|||++|++|+
T Consensus       156 ~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gdG~~i~~k~  233 (234)
T PLN02781        156 NYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRL  233 (234)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCCccEEEEEe
Confidence            99999999999999999999999999999998764322     24689999999999999999999999999999985

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=6.1e-39  Score=288.56  Aligned_cols=207  Identities=39%  Similarity=0.700  Sum_probs=185.8

Q ss_pred             CCChhHHHHHHhcCC--ChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCC
Q 022597           67 SVTPPLYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLF  144 (294)
Q Consensus        67 ~l~~~l~~Y~~~~~~--~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~  144 (294)
                      .+.+.+.+|+.+...  .+..++++++.+..+ +.++ +.|+++++|.++++..++++|||||+++              
T Consensus         7 ~~~~~l~~y~~~~~~~~~~~~~~~~~e~a~~~-~~pi-~~~e~g~~L~~L~~~~~~k~iLEiGT~~--------------   70 (219)
T COG4122           7 NMDEDLYDYLEALIPGEPPALLAELEEFAREN-GVPI-IDPETGALLRLLARLSGPKRILEIGTAI--------------   70 (219)
T ss_pred             cchHHHHHHHHhhcccCCchHHHHHHHHhHhc-CCCC-CChhHHHHHHHHHHhcCCceEEEeeccc--------------
Confidence            466889999999853  567777777766654 3333 3499999999999999999999999999              


Q ss_pred             CcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-cchhhhHHHHhhcCCCCceeEEEEcCCccch
Q 022597          145 SGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDFAFVDAEKRMY  223 (294)
Q Consensus       145 aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~  223 (294)
                       |||++|||.++|+++++|+||+++++.+.|+++++++|+.++|.++. ||+.+.+...    ..++||+||+|++|..|
T Consensus        71 -GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~----~~~~fDliFIDadK~~y  145 (219)
T COG4122          71 -GYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL----LDGSFDLVFIDADKADY  145 (219)
T ss_pred             -CHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc----cCCCccEEEEeCChhhC
Confidence             99999999999988999999999999999999999999999999999 6999988762    16899999999999999


Q ss_pred             HHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchH--HHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          224 QEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI--SIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       224 ~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~--~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      ++||+.+.++|+|||+|++||++|+|.+.++...+..+.  .++.|+..+.++|+++++++|+|||+++++|+
T Consensus       146 p~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl~v~~k~  218 (219)
T COG4122         146 PEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRKR  218 (219)
T ss_pred             HHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCceEEEeec
Confidence            999999999999999999999999999999976666665  49999999999999999999999999999985

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.88  E-value=2.6e-23  Score=193.28  Aligned_cols=168  Identities=13%  Similarity=0.189  Sum_probs=146.6

Q ss_pred             ccccccCccccccccccccccccccccccCCChhHHHHHHhcCCC-hHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Q 022597           38 CKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVRE-PEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQ  116 (294)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~~~-~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~  116 (294)
                      ..+.+.++..+...|+.+|||+++..|.++++|.+ .|+|++..+ +..|+++|..+.++.              ...++
T Consensus         5 ~~~~~~~~~~~~~~~i~~HYDl~n~fy~l~Ld~~~-~Yscayf~~~~~tL~eAQ~~k~~~~--------------~~kl~   69 (283)
T COG2230           5 RRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSM-TYSCAYFEDPDMTLEEAQRAKLDLI--------------LEKLG   69 (283)
T ss_pred             ccccccccccchhhhhhhHhhcchHHHHHhcCCCC-ceeeEEeCCCCCChHHHHHHHHHHH--------------HHhcC
Confidence            44556677788999999999999999999999998 999999655 458999998887653              33445


Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.+++++||||||+               |..++.+|+..  +.+|+|+++|+++.+.+++.++..|++++++++..|..
T Consensus        70 L~~G~~lLDiGCGW---------------G~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~r  132 (283)
T COG2230          70 LKPGMTLLDIGCGW---------------GGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYR  132 (283)
T ss_pred             CCCCCEEEEeCCCh---------------hHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccc
Confidence            55667999999999               98888888886  69999999999999999999999999999999999998


Q ss_pred             hhHHHHhhcCCCCceeEEEE-----cCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          197 DSLKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfi-----D~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +.         .++||.|+.     +.+++.|+.||+.+.+.|+|||.++++.+.
T Consensus       133 d~---------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~  178 (283)
T COG2230         133 DF---------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT  178 (283)
T ss_pred             cc---------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence            76         567999964     556888999999999999999999999995

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.87  E-value=2.4e-22  Score=187.01  Aligned_cols=164  Identities=15%  Similarity=0.217  Sum_probs=120.5

Q ss_pred             ccccccccccccccccccccccCCChhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeE
Q 022597           45 QFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRC  123 (294)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~v  123 (294)
                      +.++++.|+++|||+.+..|.++|++.+ .|+|++ ..+++.|+++|+.+..+...++              .+.++.+|
T Consensus         2 ~~~~~~~~i~~hYDl~ndfy~l~Ld~~m-~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~--------------~l~~G~~v   66 (273)
T PF02353_consen    2 SKKQSRENISAHYDLGNDFYRLFLDPTM-KYSCAYFDEGDDTLEEAQERKLDLLCEKL--------------GLKPGDRV   66 (273)
T ss_dssp             -S---HHHHHHHHTS-HHHHTTTS-TT----S----SSTT--HHHHHHHHHHHHHTTT--------------T--TT-EE
T ss_pred             ccchHHHHHHHHcCCcHHHHHHhcCCCC-CCCCeecCCchhhHHHHHHHHHHHHHHHh--------------CCCCCCEE
Confidence            3567899999999999999999999998 999998 5568889999998766533333              34455699


Q ss_pred             EEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHh
Q 022597          124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  203 (294)
Q Consensus       124 LEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~  203 (294)
                      ||||||+               |..++.+++..  +++|+++++|+++.+.+++.+++.|+.+++++..+|+.+.     
T Consensus        67 LDiGcGw---------------G~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-----  124 (273)
T PF02353_consen   67 LDIGCGW---------------GGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-----  124 (273)
T ss_dssp             EEES-TT---------------SHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred             EEeCCCc---------------cHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-----
Confidence            9999999               99999999986  6899999999999999999999999999999999999875     


Q ss_pred             hcCCCCceeEEEE-----cCCccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          204 LNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       204 ~~~~~~~fD~vfi-----D~~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                          ..+||.|+.     +.+.+.|..+|+.+.++|+|||.++++.+....
T Consensus       125 ----~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~  171 (273)
T PF02353_consen  125 ----PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD  171 (273)
T ss_dssp             ------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred             ----CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence                459999864     455678999999999999999999999886443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.72  E-value=1.2e-17  Score=162.26  Aligned_cols=162  Identities=15%  Similarity=0.207  Sum_probs=132.1

Q ss_pred             ccccCccccccccccccccccccccccCCChhHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhC
Q 022597           40 FKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILG  119 (294)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~  119 (294)
                      +...|+.++++.|+++|||+.+..|.+++++.+ .|.|.+-.+.+.|.+++..+...              +...+.+.+
T Consensus       103 ~~~~n~~~~~~~~i~~hYd~~n~~y~l~ld~~m-~ys~g~~~~~~~L~~Aq~~k~~~--------------l~~~l~l~~  167 (383)
T PRK11705        103 LFNLQSKKRAWIVGKEHYDLGNDLFEAMLDPRM-QYSCGYWKDADTLEEAQEAKLDL--------------ICRKLQLKP  167 (383)
T ss_pred             HhccCChhhHHHhhhhhcCCcHHHHHHhcCCCC-cccccccCCCCCHHHHHHHHHHH--------------HHHHhCCCC
Confidence            466899999999999999999999999999998 99999866667788887765432              223334556


Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      +++|||||||+               |..+..++...  +++|+++|+|+++++.|+++.+  ++  .+++..+|+.+. 
T Consensus       168 g~rVLDIGcG~---------------G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l-  225 (383)
T PRK11705        168 GMRVLDIGCGW---------------GGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL-  225 (383)
T ss_pred             CCEEEEeCCCc---------------cHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc-
Confidence            77999999999               99998888765  5799999999999999999884  33  388888887543 


Q ss_pred             HHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          200 KALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                              .++||.|+.-     .+...+..+++.+.++|+|||.+++..+.
T Consensus       226 --------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~  269 (383)
T PRK11705        226 --------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIG  269 (383)
T ss_pred             --------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence                    4689999753     23456789999999999999999998764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.64  E-value=1.4e-15  Score=120.62  Aligned_cols=104  Identities=22%  Similarity=0.391  Sum_probs=87.8

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..++++++..+ +++|+++|+++++++.|+++++..+..++++++++|+ ..
T Consensus         1 p~~~vLDlGcG~---------------G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~   63 (112)
T PF12847_consen    1 PGGRVLDLGCGT---------------GRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EF   63 (112)
T ss_dssp             TTCEEEEETTTT---------------SHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HG
T ss_pred             CCCEEEEEcCcC---------------CHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-cc
Confidence            356999999999               999999999554 7899999999999999999998888999999999999 32


Q ss_pred             HHHHhhcCCCCceeEEEEcC-Cc------cchHHHHHHHHhcccCCeEEEEec
Q 022597          199 LKALILNGEASSYDFAFVDA-EK------RMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~-~~------~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ....     .++||+|+... ..      +...++++.+.+.|+|||+++++.
T Consensus        64 ~~~~-----~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   64 DPDF-----LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GTTT-----SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Cccc-----CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            2222     46899999988 32      234677999999999999999874

...

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.58  E-value=5.4e-14  Score=124.22  Aligned_cols=111  Identities=22%  Similarity=0.439  Sum_probs=97.3

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ..+.++.+|||+|||+               |..++.+++..+++++|+++|+++++++.|+++++.+|+.++++++.+|
T Consensus        36 l~~~~~~~vlDlG~Gt---------------G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d  100 (198)
T PRK00377         36 LRLRKGDMILDIGCGT---------------GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE  100 (198)
T ss_pred             cCCCCcCEEEEeCCcC---------------CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence            3455677999999999               9999999988766789999999999999999999999977789999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.+.++.+     .++||+||++.....+..+++.+.+.|+|||.++++.+
T Consensus       101 ~~~~l~~~-----~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        101 APEILFTI-----NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             hhhhHhhc-----CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence            98766543     46899999987777788999999999999999998765

>PRK04457 spermidine synthase; Provisional

Probab=99.58  E-value=9.8e-14  Score=128.40  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=94.7

Q ss_pred             HHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE
Q 022597          110 LLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  189 (294)
Q Consensus       110 lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~  189 (294)
                      ++..+....++++|||||||+               |..+.+++...| +.+++++|+|++.++.|++++...+..++++
T Consensus        57 m~~~l~~~~~~~~vL~IG~G~---------------G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~  120 (262)
T PRK04457         57 MMGFLLFNPRPQHILQIGLGG---------------GSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFE  120 (262)
T ss_pred             HHHHHhcCCCCCEEEEECCCH---------------hHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceE
Confidence            334444445678999999999               999999998876 7899999999999999999987666667899


Q ss_pred             EEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe
Q 022597          190 IKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++.+|+.+.++..     .++||+||+|....       ...++++.+.+.|+|||++++.
T Consensus       121 v~~~Da~~~l~~~-----~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        121 VIEADGAEYIAVH-----RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             EEECCHHHHHHhC-----CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            9999999887754     46899999997432       2379999999999999999985

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.56  E-value=9.4e-14  Score=111.33  Aligned_cols=107  Identities=25%  Similarity=0.409  Sum_probs=91.4

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.+.++|||+|||+               |..+..+++..+ +++|+++|+++.+++.++++++..++. +++++.+|+
T Consensus        16 ~~~~~~~vldlG~G~---------------G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~   78 (124)
T TIGR02469        16 RLRPGDVLWDIGAGS---------------GSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDA   78 (124)
T ss_pred             CCCCCCEEEEeCCCC---------------CHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccc
Confidence            344567999999999               999999999876 489999999999999999999998876 589999987


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+.++..     .++||.|+++.....+.++++.+.+.|+|||.+++.-
T Consensus        79 ~~~~~~~-----~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        79 PEALEDS-----LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             cccChhh-----cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            6543332     4689999998877778899999999999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.56  E-value=1.8e-13  Score=120.30  Aligned_cols=120  Identities=25%  Similarity=0.352  Sum_probs=104.1

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..++.-.+.-..+...++++++||||||               |..++.++.. .+.++++++|.+++.++..++|.++.
T Consensus        18 TK~EIRal~ls~L~~~~g~~l~DIGaGt---------------Gsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~f   81 (187)
T COG2242          18 TKEEIRALTLSKLRPRPGDRLWDIGAGT---------------GSITIEWALA-GPSGRVIAIERDEEALELIERNAARF   81 (187)
T ss_pred             cHHHHHHHHHHhhCCCCCCEEEEeCCCc---------------cHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHh
Confidence            4455555555556777888999999999               9999999954 45999999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      |+ ++++++.|++.+.++.+      .++|.||+... ...+..++.++..|+|||.+|+.-+.
T Consensus        82 g~-~n~~vv~g~Ap~~L~~~------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          82 GV-DNLEVVEGDAPEALPDL------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             CC-CcEEEEeccchHhhcCC------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            95 57999999999988753      38999999998 88999999999999999999998773

>PLN03075 nicotianamine synthase; Provisional

Probab=99.55  E-value=3.5e-14  Score=133.47  Aligned_cols=121  Identities=17%  Similarity=0.209  Sum_probs=102.9

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH-
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-  181 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~-  181 (294)
                      +.+-++++|..+... ++++|+|||||.|              |++++.++....++++++++|.|+++++.|++.++. 
T Consensus       108 L~~lE~~~L~~~~~~-~p~~VldIGcGpg--------------pltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~  172 (296)
T PLN03075        108 LSKLEFDLLSQHVNG-VPTKVAFVGSGPL--------------PLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD  172 (296)
T ss_pred             HHHHHHHHHHHhhcC-CCCEEEEECCCCc--------------HHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc
Confidence            456677777777665 8899999999952              778888887776689999999999999999999965 


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC----CccchHHHHHHHHhcccCCeEEEEec
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA----EKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~----~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .|+.++++|..+|+.+....      .++||+||+++    .++.+.++++.+.+.|+|||++++-.
T Consensus       173 ~gL~~rV~F~~~Da~~~~~~------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        173 PDLSKRMFFHTADVMDVTES------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cCccCCcEEEECchhhcccc------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            89999999999999875322      36899999986    36889999999999999999999876

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.54  E-value=2.9e-13  Score=118.20  Aligned_cols=117  Identities=25%  Similarity=0.322  Sum_probs=96.3

Q ss_pred             CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 022597          104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG  183 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g  183 (294)
                      .+....++...+...++.+|||+|||+               |..++.+++..+ +++|+++|+++++++.|+++++..+
T Consensus        16 ~~~~r~~~~~~l~~~~~~~vLDiG~G~---------------G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~   79 (187)
T PRK08287         16 KEEVRALALSKLELHRAKHLIDVGAGT---------------GSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFG   79 (187)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCcC---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhC
Confidence            333444444455666778999999999               999999998765 6899999999999999999999988


Q ss_pred             CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +. +++++.+|+...   +     .++||+||++.....+.++++.+.+.|+|||.+++..+
T Consensus        80 ~~-~i~~~~~d~~~~---~-----~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         80 CG-NIDIIPGEAPIE---L-----PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             CC-CeEEEecCchhh---c-----CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence            75 699999887421   2     36899999987766788899999999999999999765

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.54  E-value=2e-13  Score=119.73  Aligned_cols=101  Identities=23%  Similarity=0.394  Sum_probs=87.7

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++|||+|||+               |+.++.++...+ +++|+++|.++++++.+++++++.|+. +++++++|+.+
T Consensus        41 ~~~~~vLDiGcGt---------------G~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~  103 (181)
T TIGR00138        41 LDGKKVIDIGSGA---------------GFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAED  103 (181)
T ss_pred             cCCCeEEEecCCC---------------CccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhh
Confidence            4578999999999               999999987654 689999999999999999999999986 59999999977


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ...       .++||+|++++ ...+..+++.+.++|+|||.+++.
T Consensus       104 ~~~-------~~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       104 FQH-------EEQFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             ccc-------cCCccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence            411       47899999987 567888999999999999999864

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.54  E-value=1e-13  Score=123.99  Aligned_cols=116  Identities=22%  Similarity=0.404  Sum_probs=95.2

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..|.....+..++.+.++.+|||||||+               |+.+..++...+++++|+++|+++++++.|++++++.
T Consensus        61 ~~p~~~~~~~~~l~~~~~~~VLDiG~Gs---------------G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~  125 (215)
T TIGR00080        61 SAPHMVAMMTELLELKPGMKVLEIGTGS---------------GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL  125 (215)
T ss_pred             chHHHHHHHHHHhCCCCcCEEEEECCCc---------------cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence            4555555555666777889999999999               9999999998776789999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |+ ++++++++|+.+.++.      ..+||+|++++.....   .+.+.+.|+|||.+++.
T Consensus       126 g~-~~v~~~~~d~~~~~~~------~~~fD~Ii~~~~~~~~---~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       126 GL-DNVIVIVGDGTQGWEP------LAPYDRIYVTAAGPKI---PEALIDQLKEGGILVMP  176 (215)
T ss_pred             CC-CCeEEEECCcccCCcc------cCCCCEEEEcCCcccc---cHHHHHhcCcCcEEEEE
Confidence            98 4699999998764322      3689999999765444   34577889999999885

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.52  E-value=1.7e-13  Score=121.92  Aligned_cols=117  Identities=22%  Similarity=0.300  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597          105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV  184 (294)
Q Consensus       105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl  184 (294)
                      |.....+..++...++.+|||+|||+               |+.+..++...++.++|+++|+++++++.|+++++..|+
T Consensus        58 p~~~~~~~~~l~~~~~~~VLDiG~Gs---------------G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~  122 (205)
T PRK13944         58 PHMVAMMCELIEPRPGMKILEVGTGS---------------GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY  122 (205)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECcCc---------------cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            33333333344455667999999999               999999999887678999999999999999999999998


Q ss_pred             CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .++++++.+|+.+.++.      .++||.|+++......   .+.+.+.|+|||.+++...
T Consensus       123 ~~~v~~~~~d~~~~~~~------~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        123 WGVVEVYHGDGKRGLEK------HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             CCcEEEEECCcccCCcc------CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEEEc
Confidence            88899999998764432      4689999999764433   3567889999999998643

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.50  E-value=2e-13  Score=122.30  Aligned_cols=118  Identities=24%  Similarity=0.351  Sum_probs=97.6

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ....|.....+...+.+.++.+|||||||+               |+.+..++...+++++|+++|+++++++.|+++++
T Consensus        58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~Gs---------------G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~  122 (212)
T PRK13942         58 TISAIHMVAIMCELLDLKEGMKVLEIGTGS---------------GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK  122 (212)
T ss_pred             EeCcHHHHHHHHHHcCCCCcCEEEEECCcc---------------cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            346777767777777788889999999999               99999999987767899999999999999999999


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..|+. +++++++|+.+....      .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       123 ~~g~~-~v~~~~gd~~~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        123 KLGYD-NVEVIVGDGTLGYEE------NAPYDRIYVTAAGPDI---PKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             HcCCC-CeEEEECCcccCCCc------CCCcCEEEECCCcccc---hHHHHHhhCCCcEEEEE
Confidence            99875 699999998654321      4789999998765443   34567789999999885

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.50  E-value=5.7e-13  Score=117.28  Aligned_cols=121  Identities=23%  Similarity=0.366  Sum_probs=99.5

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      ...++...++...+...++.+|||+|||+               |..++.++...+ +++|+++|+++++++.+++++++
T Consensus        23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~---------------G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~   86 (196)
T PRK07402         23 LTKREVRLLLISQLRLEPDSVLWDIGAGT---------------GTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDR   86 (196)
T ss_pred             CCHHHHHHHHHHhcCCCCCCEEEEeCCCC---------------CHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHH
Confidence            45566666666666777778999999999               999999987654 68999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .++. +++++.+|+.+.+..+     ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus        87 ~~~~-~v~~~~~d~~~~~~~~-----~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402         87 FGVK-NVEVIEGSAPECLAQL-----APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             hCCC-CeEEEECchHHHHhhC-----CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            9885 6999999997655443     345788888764 4567899999999999999998865

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.49  E-value=3.2e-13  Score=116.76  Aligned_cols=110  Identities=22%  Similarity=0.360  Sum_probs=90.4

Q ss_pred             HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcE
Q 022597          109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  188 (294)
Q Consensus       109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v  188 (294)
                      ++|...+...+.++|||+|||+               |..++.+++..+ ..+|+++|+++++++.++++++.+++.+ +
T Consensus        21 ~lL~~~l~~~~~~~vLDlG~G~---------------G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v   83 (170)
T PF05175_consen   21 RLLLDNLPKHKGGRVLDLGCGS---------------GVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-V   83 (170)
T ss_dssp             HHHHHHHHHHTTCEEEEETSTT---------------SHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-E
T ss_pred             HHHHHHHhhccCCeEEEecCCh---------------HHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-c
Confidence            3555555555888999999999               999999999776 6689999999999999999999999987 9


Q ss_pred             EEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEE
Q 022597          189 KIKHGLAADSLKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--------~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +++.+|..+.++       .++||+|+.+++.        ....++++.+.+.|+|||.+++
T Consensus        84 ~~~~~d~~~~~~-------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen   84 EVVQSDLFEALP-------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             EEEESSTTTTCC-------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccccccc-------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence            999999876532       4799999999762        1367889999999999998854

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.48  E-value=4.6e-13  Score=118.29  Aligned_cols=100  Identities=19%  Similarity=0.348  Sum_probs=87.8

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      +.+|||+|||+               |..++.++...+ +++|+++|.++++++.|+++.+..++.+ ++++++|+.+..
T Consensus        46 g~~VLDiGcGt---------------G~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~  108 (187)
T PRK00107         46 GERVLDVGSGA---------------GFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFG  108 (187)
T ss_pred             CCeEEEEcCCC---------------CHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCC
Confidence            67999999999               999999998765 7899999999999999999999999875 999999997642


Q ss_pred             HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .       .++||+|+++. ...+..+++.+.+.|+|||.+++-.
T Consensus       109 ~-------~~~fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        109 Q-------EEKFDVVTSRA-VASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             C-------CCCccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            1       36899999986 3567899999999999999998763

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.47  E-value=4.5e-13  Score=107.22  Aligned_cols=101  Identities=23%  Similarity=0.421  Sum_probs=86.2

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      .+|||+|||+               |..++.+++..  ..+++++|+|+..++.|+++++..++.++++++.+|..+..+
T Consensus         2 ~~vlD~~~G~---------------G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~   64 (117)
T PF13659_consen    2 DRVLDPGCGS---------------GTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE   64 (117)
T ss_dssp             EEEEEETSTT---------------CHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH
T ss_pred             CEEEEcCcch---------------HHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh
Confidence            4899999999               99999999885  589999999999999999999999998899999999988764


Q ss_pred             HHhhcCCCCceeEEEEcCCc-----------cchHHHHHHHHhcccCCeEEEE
Q 022597          201 ALILNGEASSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~~-----------~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+    +.++||+|+.+++.           ..+..+++.+.++|+|||++++
T Consensus        65 ~~----~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   65 PL----PDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             TC----TTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hc----cCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            33    26899999998762           2367899999999999999876

...

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.47  E-value=8.1e-13  Score=111.47  Aligned_cols=107  Identities=18%  Similarity=0.325  Sum_probs=90.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +..+|||+|||+               |..+..++..+.++++++++|+++++++.|++.+++.++. ++++.++|+.+ 
T Consensus         3 ~~~~iLDlGcG~---------------G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-   65 (152)
T PF13847_consen    3 SNKKILDLGCGT---------------GRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-   65 (152)
T ss_dssp             TTSEEEEET-TT---------------SHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-
T ss_pred             CCCEEEEecCcC---------------cHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-
Confidence            456999999999               9999999976666899999999999999999999999998 89999999988 


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ++...    .++||+|+....   ..+....++.+.++|++||++++.+..
T Consensus        66 l~~~~----~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   66 LPQEL----EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             GCGCS----STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccccc----CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            43210    278999998864   344568899999999999999988775

...

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=4.2e-13  Score=122.91  Aligned_cols=119  Identities=18%  Similarity=0.288  Sum_probs=104.5

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +.|..+.++.+.+.+.++.+|+|.|+|+               |..+.+|+.+..+.|+|++.|..+++++.|++|++.+
T Consensus        78 IyPKD~~~I~~~~gi~pg~rVlEAGtGS---------------G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~  142 (256)
T COG2519          78 IYPKDAGYIVARLGISPGSRVLEAGTGS---------------GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF  142 (256)
T ss_pred             ecCCCHHHHHHHcCCCCCCEEEEcccCc---------------hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh
Confidence            3444455677778889999999999999               9999999999988899999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      |+.+++++..+|..+...       ...||.||+|.+  +.+++++.+...|+|||.+++-.-
T Consensus       143 ~l~d~v~~~~~Dv~~~~~-------~~~vDav~LDmp--~PW~~le~~~~~Lkpgg~~~~y~P  196 (256)
T COG2519         143 GLGDRVTLKLGDVREGID-------EEDVDAVFLDLP--DPWNVLEHVSDALKPGGVVVVYSP  196 (256)
T ss_pred             ccccceEEEecccccccc-------ccccCEEEEcCC--ChHHHHHHHHHHhCCCcEEEEEcC
Confidence            999999999999987654       458999999985  447899999999999999987644

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.46  E-value=4e-13  Score=119.47  Aligned_cols=122  Identities=19%  Similarity=0.268  Sum_probs=97.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      .+.+++.+..+...+..  ++.+|||+|||+               |..+..++...+ +.+|+++|+++++++.|++++
T Consensus        23 ~~~~~~~~~~~~~~~~~--~~~~VLDiGcGt---------------G~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~   84 (202)
T PRK00121         23 WPRLSPAPLDWAELFGN--DAPIHLEIGFGK---------------GEFLVEMAKANP-DINFIGIEVHEPGVGKALKKI   84 (202)
T ss_pred             chhhcCCCCCHHHHcCC--CCCeEEEEccCC---------------CHHHHHHHHHCC-CccEEEEEechHHHHHHHHHH
Confidence            34567777777777766  667999999999               999999998765 678999999999999999999


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc---c--------chHHHHHHHHhcccCCeEEEEe
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK---R--------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~---~--------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +..++ ++++++++|+.+.++...   ..++||.|++....   .        .+..+++.+.+.|+|||++++.
T Consensus        85 ~~~~~-~~v~~~~~d~~~~l~~~~---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121         85 EEEGL-TNLRLLCGDAVEVLLDMF---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             HHcCC-CCEEEEecCHHHHHHHHc---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence            99887 469999999944444221   14689999875321   1        2578999999999999999875

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.45  E-value=9.3e-14  Score=110.37  Aligned_cols=102  Identities=30%  Similarity=0.489  Sum_probs=53.1

Q ss_pred             EEEccccccccccccccccCCCcHHHHHHHHHCCCCc--EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       124 LEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~--~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      ||||++.               |++++++++++++.+  +++++|..+. .+.+++.+++.++.++++++.++..+.++.
T Consensus         1 lEiG~~~---------------G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~   64 (106)
T PF13578_consen    1 LEIGTYS---------------GYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPS   64 (106)
T ss_dssp             -----------------------------------------EEEESS-------------GGG-BTEEEEES-THHHHHH
T ss_pred             Ccccccc---------------ccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHH
Confidence            6999999               999999999987654  8999999996 555666777788888999999999999887


Q ss_pred             HhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEecc
Q 022597          202 LILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       202 l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.    .++||++|+|+++  +.....++.+.+.|+|||+|++||+
T Consensus        65 ~~----~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   65 LP----DGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             HH----H--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             cC----CCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            74    3799999999874  5678889999999999999999985

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.45  E-value=6.3e-13  Score=121.57  Aligned_cols=106  Identities=19%  Similarity=0.275  Sum_probs=94.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+||||||||               |-.++.+++..+ .++|+++|+|+.|++.|++..+..|..+ ++++++||.+.
T Consensus        51 ~g~~vLDva~GT---------------Gd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L  113 (238)
T COG2226          51 PGDKVLDVACGT---------------GDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL  113 (238)
T ss_pred             CCCEEEEecCCc---------------cHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC
Confidence            567999999999               999999999988 8999999999999999999999999887 99999999765


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      .  +    ++.+||+|.+..+   -.+++..++.+.+.|||||.+++-+..-
T Consensus       114 P--f----~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         114 P--F----PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             C--C----CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            3  2    3789999988765   4578999999999999999999887753

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.45  E-value=5.6e-13  Score=121.51  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=80.5

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++.+|||+||||               |..+..+++..++.++|+++|+++++++.|++..+..+.. +|+++++|+.
T Consensus        45 ~~~g~~vLDv~~Gt---------------G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~  108 (233)
T PF01209_consen   45 LRPGDRVLDVACGT---------------GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAE  108 (233)
T ss_dssp             --S--EEEEET-TT---------------SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTT
T ss_pred             CCCCCEEEEeCCCh---------------HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHH
Confidence            34556999999999               9999999998877899999999999999999999998876 7999999997


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +..-      ++++||.|++...   -.+....++.+.+.|||||.+++-+.
T Consensus       109 ~lp~------~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~  154 (233)
T PF01209_consen  109 DLPF------PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEF  154 (233)
T ss_dssp             B--S-------TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HhcC------CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence            6521      1689999998765   34578899999999999999988665

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.43  E-value=1.8e-12  Score=116.16  Aligned_cols=109  Identities=19%  Similarity=0.341  Sum_probs=90.2

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      +...++++|||+|||+               |..+..++...+++++|+++|+++++++.|+++++..++ ++++++.+|
T Consensus        41 l~~~~~~~vLDiGcG~---------------G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d  104 (231)
T TIGR02752        41 MNVQAGTSALDVCCGT---------------ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGN  104 (231)
T ss_pred             cCCCCCCEEEEeCCCc---------------CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEec
Confidence            3444567999999999               999999999877688999999999999999999988887 479999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.+..  +    +.++||+|++...   ..++.++++.+.+.|+|||.+++.+.
T Consensus       105 ~~~~~--~----~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       105 AMELP--F----DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             hhcCC--C----CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            86532  1    1478999987643   45678899999999999999987543

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.42  E-value=4.5e-12  Score=125.01  Aligned_cols=157  Identities=23%  Similarity=0.293  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC
Q 022597          107 QAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH  186 (294)
Q Consensus       107 ~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~  186 (294)
                      .++++..++...++.+|||+|||+               |..++.++...+..++|+++|+++++++.+++++++.|+.+
T Consensus       240 ~s~l~~~~l~~~~g~~VLDl~ag~---------------G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~  304 (434)
T PRK14901        240 SAQLVAPLLDPQPGEVILDACAAP---------------GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS  304 (434)
T ss_pred             HHHHHHHHhCCCCcCEEEEeCCCC---------------chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe
Confidence            355566666667788999999999               99999999987767899999999999999999999999974


Q ss_pred             cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcccCCeEEE
Q 022597          187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~-------------------------~~~~~~~~~~lLkpgG~iv  241 (294)
                       ++++.+|+.+......  ...++||.|++|++...                         ..++++.+.++|||||.++
T Consensus       305 -v~~~~~D~~~~~~~~~--~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lv  381 (434)
T PRK14901        305 -IKILAADSRNLLELKP--QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLV  381 (434)
T ss_pred             -EEEEeCChhhcccccc--cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence             9999999876532110  01368999999975210                         3577888899999999999


Q ss_pred             EecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEE-----Eeec---CCceEEEE
Q 022597          242 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS-----MVPI---GDGMTICQ  292 (294)
Q Consensus       242 id~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~-----~lp~---gdGl~i~~  292 (294)
                      .......-        .....-+..|   +.++|+++..     +.|-   +||+-+|+
T Consensus       382 ystcsi~~--------~Ene~~v~~~---l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~  429 (434)
T PRK14901        382 YATCTLHP--------AENEAQIEQF---LARHPDWKLEPPKQKIWPHRQDGDGFFMAV  429 (434)
T ss_pred             EEeCCCCh--------hhHHHHHHHH---HHhCCCcEecCCCCccCCCCCCCCcEEEEE
Confidence            87764322        1112233444   4567777644     4454   48888875

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.42  E-value=2.3e-12  Score=118.00  Aligned_cols=102  Identities=22%  Similarity=0.326  Sum_probs=87.0

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++..   +.+|+++|+++++++.|+++.+..|+.++++++++|+.+.
T Consensus        44 ~~~~vLDiGcG~---------------G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l  105 (255)
T PRK11036         44 RPLRVLDAGGGE---------------GQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI  105 (255)
T ss_pred             CCCEEEEeCCCc---------------hHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence            456999999999               9999999874   5799999999999999999999999988999999999875


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+..     .++||+|+.+..   ..+...+++.+.++|+|||++++-
T Consensus       106 ~~~~-----~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        106 AQHL-----ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             hhhc-----CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            4322     578999997653   245678899999999999999864

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.42  E-value=1.6e-12  Score=119.50  Aligned_cols=122  Identities=22%  Similarity=0.286  Sum_probs=94.5

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +-|....++.+...+.++.+|||.|+|+               |..+.++++++.+.|+|++.|.+++..+.|+++++..
T Consensus        24 iYpkD~~~I~~~l~i~pG~~VlEaGtGS---------------G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~   88 (247)
T PF08704_consen   24 IYPKDISYILMRLDIRPGSRVLEAGTGS---------------GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH   88 (247)
T ss_dssp             --HHHHHHHHHHTT--TT-EEEEE--TT---------------SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT
T ss_pred             eeCchHHHHHHHcCCCCCCEEEEecCCc---------------HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc
Confidence            3444456677778889999999999999               9999999999988999999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcc-cCCeEEEEec
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI-RVGGIIVIDN  244 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lL-kpgG~ivid~  244 (294)
                      |+.++|++.++|..+...   ..+....+|.||+|.+.+  .+.++.+.+.| ++||.+++-.
T Consensus        89 gl~~~v~~~~~Dv~~~g~---~~~~~~~~DavfLDlp~P--w~~i~~~~~~L~~~gG~i~~fs  146 (247)
T PF08704_consen   89 GLDDNVTVHHRDVCEEGF---DEELESDFDAVFLDLPDP--WEAIPHAKRALKKPGGRICCFS  146 (247)
T ss_dssp             TCCTTEEEEES-GGCG-----STT-TTSEEEEEEESSSG--GGGHHHHHHHE-EEEEEEEEEE
T ss_pred             CCCCCceeEecceecccc---cccccCcccEEEEeCCCH--HHHHHHHHHHHhcCCceEEEEC
Confidence            999999999999864321   011147899999998643  56778888999 8999998753

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=1.6e-12  Score=116.36  Aligned_cols=117  Identities=26%  Similarity=0.421  Sum_probs=98.8

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      .+....|.....|..++...++.+|||||||+               ||.+..+++..   ++|+++|+.++..+.|+++
T Consensus        52 gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGs---------------GY~aAvla~l~---~~V~siEr~~~L~~~A~~~  113 (209)
T COG2518          52 GQTISAPHMVARMLQLLELKPGDRVLEIGTGS---------------GYQAAVLARLV---GRVVSIERIEELAEQARRN  113 (209)
T ss_pred             CceecCcHHHHHHHHHhCCCCCCeEEEECCCc---------------hHHHHHHHHHh---CeEEEEEEcHHHHHHHHHH
Confidence            45567787777777888888999999999999               99999999975   4999999999999999999


Q ss_pred             HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++..|+.+ |++++||...-.+.      ..+||.|++.+.....++   .+.+.|++||.+++-
T Consensus       114 L~~lg~~n-V~v~~gDG~~G~~~------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P  168 (209)
T COG2518         114 LETLGYEN-VTVRHGDGSKGWPE------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP  168 (209)
T ss_pred             HHHcCCCc-eEEEECCcccCCCC------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence            99999986 99999999765443      489999999886554433   457789999999875

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.40  E-value=4.4e-12  Score=118.62  Aligned_cols=118  Identities=17%  Similarity=0.247  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHHh-h---hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQ-I---LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus       103 v~~~~~~lL~~l~~-~---~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      ..|++..++...+. .   .++.+|||+|||+               |..++.++...+ +.+|+++|+|+++++.|+++
T Consensus       101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~Gs---------------G~i~~~la~~~~-~~~v~avDis~~al~~A~~n  164 (284)
T TIGR03533       101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGS---------------GCIAIACAYAFP-EAEVDAVDISPDALAVAEIN  164 (284)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEeCch---------------hHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHH
Confidence            45667777766554 2   2457999999999               999999998775 68999999999999999999


Q ss_pred             HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHHHHH
Q 022597          179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELL  230 (294)
Q Consensus       179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~~~~  230 (294)
                      ++.+|+.++++++.+|..+.++       .++||+|+.+++.                            ..|..+++.+
T Consensus       165 ~~~~~~~~~i~~~~~D~~~~~~-------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a  237 (284)
T TIGR03533       165 IERHGLEDRVTLIQSDLFAALP-------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEA  237 (284)
T ss_pred             HHHcCCCCcEEEEECchhhccC-------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHH
Confidence            9999998889999999865431       3579999998641                            1246678888


Q ss_pred             HhcccCCeEEEEe
Q 022597          231 LQLIRVGGIIVID  243 (294)
Q Consensus       231 ~~lLkpgG~ivid  243 (294)
                      .+.|+|||.+++.
T Consensus       238 ~~~L~~gG~l~~e  250 (284)
T TIGR03533       238 ADHLNENGVLVVE  250 (284)
T ss_pred             HHhcCCCCEEEEE
Confidence            8999999999875

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.40  E-value=2.1e-12  Score=118.54  Aligned_cols=120  Identities=19%  Similarity=0.297  Sum_probs=102.5

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      ..+-| +-+|+.++.....++|||+|||+               |..++.++...+ ..++++||+++++.+.|+++++.
T Consensus        28 ~~~~D-aiLL~~~~~~~~~~~IlDlGaG~---------------G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~l   90 (248)
T COG4123          28 RYGTD-AILLAAFAPVPKKGRILDLGAGN---------------GALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVAL   90 (248)
T ss_pred             ccccH-HHHHHhhcccccCCeEEEecCCc---------------CHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHh
Confidence            34433 67889999888899999999999               999999998765 49999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----c----------------cchHHHHHHHHhcccCCeEE
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----K----------------RMYQEYFELLLQLIRVGGII  240 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~----------------~~~~~~~~~~~~lLkpgG~i  240 (294)
                      +++.++++++++|..+..+...    ..+||+|+++++     .                ....++++.+..+|||||.+
T Consensus        91 n~l~~ri~v~~~Di~~~~~~~~----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l  166 (248)
T COG4123          91 NPLEERIQVIEADIKEFLKALV----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRL  166 (248)
T ss_pred             CcchhceeEehhhHHHhhhccc----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEE
Confidence            9999999999999988877652    457999999876     1                12578888889999999998


Q ss_pred             EE
Q 022597          241 VI  242 (294)
Q Consensus       241 vi  242 (294)
                      .+
T Consensus       167 ~~  168 (248)
T COG4123         167 AF  168 (248)
T ss_pred             EE
Confidence            75

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.40  E-value=7.4e-12  Score=122.35  Aligned_cols=111  Identities=19%  Similarity=0.296  Sum_probs=92.3

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC-CcEEEEEcc
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~~~gd  194 (294)
                      ...++++|||+|||+               |..++..+.  +...+|+++|+|+.+++.|+++++.+|+. ++++++++|
T Consensus       217 ~~~~g~rVLDlfsgt---------------G~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D  279 (396)
T PRK15128        217 RYVENKRVLNCFSYT---------------GGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDD  279 (396)
T ss_pred             HhcCCCeEEEeccCC---------------CHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEcc
Confidence            445678999999999               988776554  33469999999999999999999999996 589999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.+.++.+...  .++||+||+|++.            ..|.++++.+.++|+|||+++....
T Consensus       280 ~~~~l~~~~~~--~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        280 VFKLLRTYRDR--GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             HHHHHHHHHhc--CCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            99988765432  3589999999872            3578888889999999999997664

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.38  E-value=1e-11  Score=120.99  Aligned_cols=124  Identities=23%  Similarity=0.312  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          106 DQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       106 ~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      ||-..-.++.....+++||++-|||               |..++..|..-  ..+||+||.|...++.|++|++.+|+.
T Consensus       204 DqR~~R~~l~~~~~GkrvLNlFsYT---------------GgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~  266 (393)
T COG1092         204 DQRDNRRALGELAAGKRVLNLFSYT---------------GGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLD  266 (393)
T ss_pred             HhHHHHHHHhhhccCCeEEEecccC---------------cHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCC
Confidence            3444445566666789999999999               98888877752  349999999999999999999999985


Q ss_pred             -CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC------------ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          186 -HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------------KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       186 -~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~------------~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                       .+++++.+|+.++++.....  ..+||+||+|++            .++|......+.++|+|||++++.+...+
T Consensus       267 ~~~~~~i~~Dvf~~l~~~~~~--g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~  340 (393)
T COG1092         267 GDRHRFIVGDVFKWLRKAERR--GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH  340 (393)
T ss_pred             ccceeeehhhHHHHHHHHHhc--CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence             67899999999999887654  369999999987            24588888999999999999999887544

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.38  E-value=2.7e-12  Score=115.36  Aligned_cols=117  Identities=23%  Similarity=0.377  Sum_probs=89.6

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      ...|..-..+..++.+.++.+|||||||+               ||.+..++....+.++|+++|.+++..+.|+++++.
T Consensus        55 is~P~~~a~~l~~L~l~pg~~VLeIGtGs---------------GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~  119 (209)
T PF01135_consen   55 ISAPSMVARMLEALDLKPGDRVLEIGTGS---------------GYQAALLAHLVGPVGRVVSVERDPELAERARRNLAR  119 (209)
T ss_dssp             E--HHHHHHHHHHTTC-TT-EEEEES-TT---------------SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcCCCCEEEEecCCC---------------cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHH
Confidence            34565544455555577888999999999               999999999887778999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .|+. +|+++++|...-.+.      .++||.|++.+..+..+   +.+.+.|++||.+|+-
T Consensus       120 ~~~~-nv~~~~gdg~~g~~~------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  120 LGID-NVEVVVGDGSEGWPE------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAP  171 (209)
T ss_dssp             HTTH-SEEEEES-GGGTTGG------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred             hccC-ceeEEEcchhhcccc------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEE
Confidence            9987 699999998765443      47899999998765443   3467789999999984

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.37  E-value=8.2e-12  Score=111.11  Aligned_cols=114  Identities=23%  Similarity=0.334  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      ...|.....+..++...++.+|||+|||+               |+.+..++...   ++++++|.++++++.|++++++
T Consensus        61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~Gs---------------G~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~  122 (212)
T PRK00312         61 ISQPYMVARMTELLELKPGDRVLEIGTGS---------------GYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQ  122 (212)
T ss_pred             eCcHHHHHHHHHhcCCCCCCEEEEECCCc---------------cHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHH
Confidence            46777777777777777889999999999               99998887763   4899999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .|+.+ +++..+|+.+.++.      .++||+|+++.....+   .+.+.+.|+|||.+++.
T Consensus       123 ~~~~~-v~~~~~d~~~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        123 LGLHN-VSVRHGDGWKGWPA------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP  174 (212)
T ss_pred             CCCCc-eEEEECCcccCCCc------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence            98864 99999998653221      3689999999865444   45678899999999985

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.36  E-value=6.1e-12  Score=124.29  Aligned_cols=123  Identities=22%  Similarity=0.314  Sum_probs=101.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +....++++..++...++++|||+|||+               |..++.++...+++++|+++|+++++++.+++++++.
T Consensus       234 ~qd~~s~lv~~~l~~~~g~~VLDlgaG~---------------G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~  298 (444)
T PRK14902        234 IQDESSMLVAPALDPKGGDTVLDACAAP---------------GGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL  298 (444)
T ss_pred             EEChHHHHHHHHhCCCCCCEEEEeCCCC---------------CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence            3444566777777777888999999999               9999999998765789999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccCC
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVG  237 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkpg  237 (294)
                      |+.+ ++++++|+.+....+     .++||+||+|++..                         ...++++.+.++|+||
T Consensus       299 g~~~-v~~~~~D~~~~~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG  372 (444)
T PRK14902        299 GLTN-IETKALDARKVHEKF-----AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG  372 (444)
T ss_pred             CCCe-EEEEeCCcccccchh-----cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9975 999999997654333     36899999997621                         0245788889999999


Q ss_pred             eEEEEeccc
Q 022597          238 GIIVIDNVL  246 (294)
Q Consensus       238 G~ivid~vl  246 (294)
                      |.++...+-
T Consensus       373 G~lvystcs  381 (444)
T PRK14902        373 GILVYSTCT  381 (444)
T ss_pred             CEEEEEcCC
Confidence            999987663

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.36  E-value=8.1e-12  Score=115.34  Aligned_cols=109  Identities=12%  Similarity=0.121  Sum_probs=86.5

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH--hCCCCcEEEEEcc
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGVSHKVKIKHGL  194 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~--~gl~~~v~~~~gd  194 (294)
                      ..++.+|||+||||               |..+..++...++.++|+++|+++++++.|+++...  .+..++++++++|
T Consensus        71 ~~~~~~VLDlGcGt---------------G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d  135 (261)
T PLN02233         71 AKMGDRVLDLCCGS---------------GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGD  135 (261)
T ss_pred             CCCCCEEEEECCcC---------------CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcc
Confidence            34556999999999               999998888766578999999999999999887642  2334579999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +.+..  +    ++++||+|++...   ..+...+++.+.+.|||||.+++-+..
T Consensus       136 ~~~lp--~----~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~  184 (261)
T PLN02233        136 ATDLP--F----DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFN  184 (261)
T ss_pred             cccCC--C----CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence            86541  1    2578999987532   346788999999999999999887664

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.34  E-value=1.5e-11  Score=116.33  Aligned_cols=118  Identities=18%  Similarity=0.260  Sum_probs=94.6

Q ss_pred             CCHHHHHHHHHHHh-hh---CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQ-IL---GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus       103 v~~~~~~lL~~l~~-~~---~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      ..|++..++...+. ..   ++.+|||+|||+               |..++.++...+ +.+|+++|+|+++++.|+++
T Consensus       113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~Gs---------------G~iai~la~~~p-~~~V~avDis~~al~~A~~n  176 (307)
T PRK11805        113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGS---------------GCIAIACAYAFP-DAEVDAVDISPDALAVAEIN  176 (307)
T ss_pred             CCCchHHHHHHHHHHHhccCCCCEEEEEechh---------------hHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHH
Confidence            34566666666543 21   226899999999               999999998775 78999999999999999999


Q ss_pred             HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHHHHH
Q 022597          179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELL  230 (294)
Q Consensus       179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~~~~  230 (294)
                      ++.+|+.++++++++|..+.++       .++||+|+.+++-                            ..|..+++.+
T Consensus       177 ~~~~~l~~~i~~~~~D~~~~l~-------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a  249 (307)
T PRK11805        177 IERHGLEDRVTLIESDLFAALP-------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEA  249 (307)
T ss_pred             HHHhCCCCcEEEEECchhhhCC-------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHH
Confidence            9999998889999999865432       3579999988531                            1256778888


Q ss_pred             HhcccCCeEEEEe
Q 022597          231 LQLIRVGGIIVID  243 (294)
Q Consensus       231 ~~lLkpgG~ivid  243 (294)
                      .+.|+|||.+++.
T Consensus       250 ~~~L~pgG~l~~E  262 (307)
T PRK11805        250 PDYLTEDGVLVVE  262 (307)
T ss_pred             HHhcCCCCEEEEE
Confidence            8999999999985

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.34  E-value=1.4e-11  Score=108.67  Aligned_cols=105  Identities=16%  Similarity=0.251  Sum_probs=87.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ...++||||||+               |..+..++...| +..++++|+++++++.|++++++.++. +++++++|+.+.
T Consensus        16 ~~~~ilDiGcG~---------------G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~   78 (194)
T TIGR00091        16 KAPLHLEIGCGK---------------GRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANEL   78 (194)
T ss_pred             CCceEEEeCCCc---------------cHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHH
Confidence            445899999999               999999999876 789999999999999999999999886 799999999886


Q ss_pred             HHHHhhcCCCCceeEEEEcCCcc-----------chHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~-----------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +....   ..+++|.|+++.+..           .+..+++.+.+.|+|||.+++.
T Consensus        79 ~~~~~---~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        79 LDKFF---PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             HHhhC---CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence            64432   135899999874311           1367999999999999999763

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.34  E-value=1.5e-11  Score=128.08  Aligned_cols=112  Identities=21%  Similarity=0.298  Sum_probs=95.1

Q ss_pred             HHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC-CcEEE
Q 022597          112 AMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKI  190 (294)
Q Consensus       112 ~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~  190 (294)
                      ..+....++++|||+||||               |..+++++..  ...+|+++|.|+.+++.|+++++.+|+. +++++
T Consensus       531 ~~~~~~~~g~rVLDlf~gt---------------G~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~  593 (702)
T PRK11783        531 RMIGQMAKGKDFLNLFAYT---------------GTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRL  593 (702)
T ss_pred             HHHHHhcCCCeEEEcCCCC---------------CHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEE
Confidence            3345556788999999999               9999999875  2357999999999999999999999997 68999


Q ss_pred             EEcchhhhHHHHhhcCCCCceeEEEEcCCc--------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          191 KHGLAADSLKALILNGEASSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--------------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +++|+.+.++.+     .++||+||+|++.              +.|.++++.+.++|+|||++++...
T Consensus       594 i~~D~~~~l~~~-----~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        594 IQADCLAWLKEA-----REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             EEccHHHHHHHc-----CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            999999887654     4689999999861              2477888899999999999998765

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.34  E-value=1.3e-11  Score=121.81  Aligned_cols=123  Identities=20%  Similarity=0.310  Sum_probs=101.6

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ++...++++..++...++.+|||+|||+               |..|+.++..++++++|+++|+++++++.+++++++.
T Consensus       221 ~Qd~~s~~~~~~l~~~~g~~VLD~cagp---------------Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~  285 (431)
T PRK14903        221 VQGESSQIVPLLMELEPGLRVLDTCAAP---------------GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL  285 (431)
T ss_pred             EECHHHHHHHHHhCCCCCCEEEEeCCCc---------------cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3444566777777778888999999999               9999999998876799999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccCC
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVG  237 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkpg  237 (294)
                      |+. ++++.++|+.+.....     .++||.|++|++..                         .+.++++.+.++|+||
T Consensus       286 g~~-~v~~~~~Da~~l~~~~-----~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG  359 (431)
T PRK14903        286 KLS-SIEIKIADAERLTEYV-----QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG  359 (431)
T ss_pred             CCC-eEEEEECchhhhhhhh-----hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            986 4999999987643222     46899999997621                         1356688889999999


Q ss_pred             eEEEEeccc
Q 022597          238 GIIVIDNVL  246 (294)
Q Consensus       238 G~ivid~vl  246 (294)
                      |.++.....
T Consensus       360 G~LvYsTCs  368 (431)
T PRK14903        360 GILLYSTCT  368 (431)
T ss_pred             CEEEEEECC
Confidence            999998774

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.34  E-value=3.6e-11  Score=107.28  Aligned_cols=113  Identities=17%  Similarity=0.196  Sum_probs=87.7

Q ss_pred             HHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE
Q 022597          110 LLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  189 (294)
Q Consensus       110 lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~  189 (294)
                      ++.++.....+.+|||+|||+               |..++.++...  ..+|+++|.+++.++.++++++.+|+. +++
T Consensus        44 l~~~l~~~~~~~~vLDl~~Gs---------------G~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~  105 (199)
T PRK10909         44 LFNWLAPVIVDARCLDCFAGS---------------GALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NAR  105 (199)
T ss_pred             HHHHHhhhcCCCEEEEcCCCc---------------cHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEE
Confidence            445554445667999999999               99998654432  469999999999999999999999975 699


Q ss_pred             EEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHh--cccCCeEEEEecc
Q 022597          190 IKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQ--LIRVGGIIVIDNV  245 (294)
Q Consensus       190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~--lLkpgG~ivid~v  245 (294)
                      ++.+|+.+.++..     .++||+||+|++  ...+.+.++.+.+  +|+|+|++++..-
T Consensus       106 ~~~~D~~~~l~~~-----~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        106 VVNTNALSFLAQP-----GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             EEEchHHHHHhhc-----CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence            9999998766432     357999999998  3445666666654  4899999998643

>PRK00811 spermidine synthase; Provisional

Probab=99.34  E-value=3.6e-11  Score=112.45  Aligned_cols=105  Identities=21%  Similarity=0.321  Sum_probs=86.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C--CCcEEEEEc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V--SHKVKIKHG  193 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l--~~~v~~~~g  193 (294)
                      .++++||+||||+               |..+..+++. +...+|++||+|+++++.|++++...+  .  .++++++.+
T Consensus        75 ~~p~~VL~iG~G~---------------G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~  138 (283)
T PRK00811         75 PNPKRVLIIGGGD---------------GGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIG  138 (283)
T ss_pred             CCCCEEEEEecCc---------------hHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEEC
Confidence            3578999999999               9998888864 335799999999999999999987643  2  568999999


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |+.+.++..     .++||+|++|...+       ...++++.+.+.|+|||++++.
T Consensus       139 Da~~~l~~~-----~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        139 DGIKFVAET-----ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             chHHHHhhC-----CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            999887652     57899999986321       1368889999999999999864

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.34  E-value=5.4e-11  Score=106.72  Aligned_cols=157  Identities=23%  Similarity=0.311  Sum_probs=121.5

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCc--HHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSG--YSSLAIALVL-PESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG--~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      -+|+.++++..|+.-.+++.++|+.++-               |  ..+++|+.+. ..+|++++|-.+++.....++.+
T Consensus        25 ~ep~~aEfISAlAAG~nAkliVe~~s~g---------------~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l   89 (218)
T PF07279_consen   25 KEPGVAEFISALAAGWNAKLIVEAWSSG---------------GAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKAL   89 (218)
T ss_pred             CCCCHHHHHHHHhccccceEEEEEecCC---------------CchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHH
Confidence            3688999999999999999999997764               3  2455555544 35899999999999999999999


Q ss_pred             HHhCCCCcEEEEEcchh-hhHHHHhhcCCCCceeEEEEcCCccchH-HHHHHHHhcccCCeEEEEecccCCCcccCcccC
Q 022597          180 ERAGVSHKVKIKHGLAA-DSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVIDNVLWHGKVADQMVN  257 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~-~~l~~l~~~~~~~~fD~vfiD~~~~~~~-~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~  257 (294)
                      ...|+.+.++|+.|+.. +.++.+      ...||+++|...++|. ++|+.+ ++=+.|.++|..|.+..+.- .    
T Consensus        90 ~~~~~~~~vEfvvg~~~e~~~~~~------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~~-~----  157 (218)
T PF07279_consen   90 GEAGLSDVVEFVVGEAPEEVMPGL------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRSTN-G----  157 (218)
T ss_pred             hhccccccceEEecCCHHHHHhhc------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCcC-C----
Confidence            99999988999999854 566665      6799999999988887 777764 33356677777887543210 0    


Q ss_pred             CcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 022597          258 DAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK  293 (294)
Q Consensus       258 ~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k  293 (294)
                             -.+...+...+.+.+++||||.||.|++-
T Consensus       158 -------~~w~~~~~~~r~Vrsv~LPIG~GleVt~i  186 (218)
T PF07279_consen  158 -------FSWRSVLRGRRVVRSVFLPIGKGLEVTRI  186 (218)
T ss_pred             -------ccHHHhcCCCCceeEEEeccCCCeEEEEE
Confidence                   13445566778899999999999999863

The function of this family is unknown.

>PRK01581 speE spermidine synthase; Validated

Probab=99.34  E-value=2.5e-11  Score=117.02  Aligned_cols=107  Identities=16%  Similarity=0.268  Sum_probs=85.0

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH-----HHhCC-CCcEE
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----ERAGV-SHKVK  189 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~-----~~~gl-~~~v~  189 (294)
                      ...++++||+||||+               |+....+++. ++..+|++||+|+++++.|+++.     .+.++ .++++
T Consensus       147 ~h~~PkrVLIIGgGd---------------G~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~  210 (374)
T PRK01581        147 KVIDPKRVLILGGGD---------------GLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVN  210 (374)
T ss_pred             hCCCCCEEEEECCCH---------------HHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceE
Confidence            345778999999999               8877766663 44679999999999999999732     12222 47899


Q ss_pred             EEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------ch-HHHHHHHHhcccCCeEEEEe
Q 022597          190 IKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MY-QEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~-~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++.+|+.+.++..     .++||+||+|...+       -| .++++.+.+.|+|||++++.
T Consensus       211 vvi~Da~~fL~~~-----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        211 VHVCDAKEFLSSP-----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             EEECcHHHHHHhc-----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9999999988754     57899999996432       12 67999999999999999875

>PLN02244 tocopherol O-methyltransferase

Probab=99.33  E-value=1.5e-11  Score=117.64  Aligned_cols=106  Identities=19%  Similarity=0.192  Sum_probs=89.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||||||+               |..+..++...  +++|+++|+++.+++.|+++.+..|+.++++++.+|+.+
T Consensus       117 ~~~~~VLDiGCG~---------------G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~  179 (340)
T PLN02244        117 KRPKRIVDVGCGI---------------GGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN  179 (340)
T ss_pred             CCCCeEEEecCCC---------------CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence            3567999999999               99999999876  579999999999999999999999998899999999876


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ..  +    +.++||+|+....   ..+...+++.+.+.|||||.+++.+..
T Consensus       180 ~~--~----~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        180 QP--F----EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             CC--C----CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            41  1    2578999987432   345678999999999999999986643

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.33  E-value=1.1e-11  Score=114.05  Aligned_cols=112  Identities=16%  Similarity=0.305  Sum_probs=92.1

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++++|||+|||+               |..++.++....+.++|+++|+++++++.|+++.+..|+. +++++.+|.
T Consensus        74 ~~~~g~~VLDiG~G~---------------G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~  137 (272)
T PRK11873         74 ELKPGETVLDLGSGG---------------GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEI  137 (272)
T ss_pred             cCCCCCEEEEeCCCC---------------CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcch
Confidence            455778999999999               9988888887766789999999999999999999998885 799999987


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      .+. + +    ..++||+|+.+..   ..+....++.+.+.|+|||.+++.++...+
T Consensus       138 ~~l-~-~----~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~  188 (272)
T PRK11873        138 EAL-P-V----ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG  188 (272)
T ss_pred             hhC-C-C----CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence            543 1 1    1468999987642   345678999999999999999998876544

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.33  E-value=2e-11  Score=111.62  Aligned_cols=105  Identities=13%  Similarity=0.234  Sum_probs=86.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++.+|||+|||+               |..+..+++.. .++++++++|+++++++.|+++++..+...+++++.+|+.+
T Consensus        56 ~~~~vLDlGcGt---------------G~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~  120 (247)
T PRK15451         56 PGTQVYDLGCSL---------------GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD  120 (247)
T ss_pred             CCCEEEEEcccC---------------CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh
Confidence            556999999999               99999888854 35789999999999999999999998888889999999865


Q ss_pred             hHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ..        ...+|+|++..     .......+++.+.+.|+|||.+++.+..
T Consensus       121 ~~--------~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        121 IA--------IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             CC--------CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            41        24689887642     2334578999999999999999987643

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.33  E-value=2.3e-11  Score=112.55  Aligned_cols=122  Identities=16%  Similarity=0.243  Sum_probs=97.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +.....++...++...++.+|||+|||+               |..++.++..++..++|+++|+++++++.+++++++.
T Consensus        55 ~qd~~s~~~~~~l~~~~g~~VLDl~ag~---------------G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~  119 (264)
T TIGR00446        55 IQEASSMIPPLALEPDPPERVLDMAAAP---------------GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC  119 (264)
T ss_pred             EECHHHHHHHHHhCCCCcCEEEEECCCc---------------hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc
Confidence            3334444455555666778999999999               9999999998876789999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccCC
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVG  237 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkpg  237 (294)
                      |+. +++++++|+.+....      .++||.|++|++..                         ...++++.+.++|+||
T Consensus       120 g~~-~v~~~~~D~~~~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg  192 (264)
T TIGR00446       120 GVL-NVAVTNFDGRVFGAA------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG  192 (264)
T ss_pred             CCC-cEEEecCCHHHhhhh------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            986 599999998754221      35699999997621                         1345888888999999


Q ss_pred             eEEEEeccc
Q 022597          238 GIIVIDNVL  246 (294)
Q Consensus       238 G~ivid~vl  246 (294)
                      |+++.....
T Consensus       193 G~lvYstcs  201 (264)
T TIGR00446       193 GVLVYSTCS  201 (264)
T ss_pred             CEEEEEeCC
Confidence            999987653

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.32  E-value=4.4e-11  Score=117.68  Aligned_cols=122  Identities=19%  Similarity=0.241  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          106 DQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       106 ~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      ..++++...+...++.+|||+|||+               |..++.++...+ +++|+++|+++++++.+++++++.|+.
T Consensus       225 ~~s~~~~~~L~~~~g~~VLDlcag~---------------G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~  288 (426)
T TIGR00563       225 ASAQWVATWLAPQNEETILDACAAP---------------GGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT  288 (426)
T ss_pred             HHHHHHHHHhCCCCCCeEEEeCCCc---------------cHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            3456666667777888999999999               999999999886 789999999999999999999999987


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcccCCeEE
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGII  240 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~-------------------------~~~~~~~~~~lLkpgG~i  240 (294)
                      .++++..+|........    ..++||.||+|++...                         ..++++.+.++|||||.+
T Consensus       289 ~~v~~~~~d~~~~~~~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~l  364 (426)
T TIGR00563       289 IKAETKDGDGRGPSQWA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTL  364 (426)
T ss_pred             eEEEEeccccccccccc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence            44555777765322100    1468999999965110                         357888889999999999


Q ss_pred             EEecccC
Q 022597          241 VIDNVLW  247 (294)
Q Consensus       241 vid~vl~  247 (294)
                      ++...-+
T Consensus       365 vystcs~  371 (426)
T TIGR00563       365 VYATCSV  371 (426)
T ss_pred             EEEeCCC
Confidence            9987743

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=5.2e-11  Score=117.23  Aligned_cols=120  Identities=23%  Similarity=0.338  Sum_probs=96.1

Q ss_pred             CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 022597          104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG  183 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g  183 (294)
                      +...+++...++...++.+|||+|||+               |..++.++...+ +++|+++|+++++++.+++++++.|
T Consensus       229 Qd~~s~~~~~~l~~~~g~~VLDlgaG~---------------G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g  292 (427)
T PRK10901        229 QDAAAQLAATLLAPQNGERVLDACAAP---------------GGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLG  292 (427)
T ss_pred             ECHHHHHHHHHcCCCCCCEEEEeCCCC---------------ChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            334455666677777888999999999               999999999875 4899999999999999999999998


Q ss_pred             CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccCCe
Q 022597          184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGG  238 (294)
Q Consensus       184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkpgG  238 (294)
                      +.  ++++.+|+.+.....    ..++||.||+|++..                         .+.++++.+.++|+|||
T Consensus       293 ~~--~~~~~~D~~~~~~~~----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG  366 (427)
T PRK10901        293 LK--ATVIVGDARDPAQWW----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGG  366 (427)
T ss_pred             CC--eEEEEcCcccchhhc----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            85  789999987643211    146799999998621                         02467888899999999


Q ss_pred             EEEEecc
Q 022597          239 IIVIDNV  245 (294)
Q Consensus       239 ~ivid~v  245 (294)
                      .+++..+
T Consensus       367 ~lvystc  373 (427)
T PRK10901        367 TLLYATC  373 (427)
T ss_pred             EEEEEeC
Confidence            9998766

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.32  E-value=9.1e-12  Score=111.06  Aligned_cols=103  Identities=17%  Similarity=0.271  Sum_probs=87.5

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      ++|||||||+               |..+..++...+ +++++++|+++++++.++++++..|+.++++++.+|+.+.. 
T Consensus         1 ~~vLDiGcG~---------------G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-   63 (224)
T smart00828        1 KRVLDFGCGY---------------GSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-   63 (224)
T ss_pred             CeEEEECCCC---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-
Confidence            4799999999               999999998775 68999999999999999999999999999999999985431 


Q ss_pred             HHhhcCCCCceeEEEEcC---CccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          201 ALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~---~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                       .     .++||+|+...   ...+...+|+.+.++|+|||.+++.++.
T Consensus        64 -~-----~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       64 -F-----PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             -C-----CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence             1     36899998532   1345789999999999999999998774

>TIGR00740 methyltransferase, putative

Probab=99.30  E-value=5.4e-11  Score=107.73  Aligned_cols=105  Identities=8%  Similarity=0.090  Sum_probs=87.1

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      +..+|||+|||+               |..+..++..++ ++++++++|+++++++.|+++++..+...+++++++|+.+
T Consensus        53 ~~~~iLDlGcG~---------------G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~  117 (239)
T TIGR00740        53 PDSNVYDLGCSR---------------GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH  117 (239)
T ss_pred             CCCEEEEecCCC---------------CHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence            556999999999               999999998763 4789999999999999999999988777789999999976


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ..        ..++|+|++...     ..+...+++.+.+.|+|||.+++.+..
T Consensus       118 ~~--------~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~  163 (239)
T TIGR00740       118 VE--------IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  163 (239)
T ss_pred             CC--------CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence            42        245888765432     334678999999999999999998764

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.29  E-value=3.8e-11  Score=104.14  Aligned_cols=109  Identities=12%  Similarity=0.239  Sum_probs=87.7

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      +.+|...+...++++|||+|||+               |..+..++...   .+|+++|+++++++.++++++..+.  +
T Consensus         8 ~~~l~~~l~~~~~~~vLdlG~G~---------------G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~   67 (179)
T TIGR00537         8 SLLLEANLRELKPDDVLEIGAGT---------------GLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--G   67 (179)
T ss_pred             HHHHHHHHHhcCCCeEEEeCCCh---------------hHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--c
Confidence            35666666677778999999999               99999988753   3899999999999999999998876  4


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc------------------------chHHHHHHHHhcccCCeEEEEe
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~------------------------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++++.+|..+..        .++||+|+.+++..                        .+..+++.+.++|+|||.+++-
T Consensus        68 ~~~~~~d~~~~~--------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~  139 (179)
T TIGR00537        68 LDVVMTDLFKGV--------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI  139 (179)
T ss_pred             eEEEEccccccc--------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence            888999976532        35899999875410                        1467888899999999998875


Q ss_pred             c
Q 022597          244 N  244 (294)
Q Consensus       244 ~  244 (294)
                      .
T Consensus       140 ~  140 (179)
T TIGR00537       140 Q  140 (179)
T ss_pred             E
Confidence            4

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.29  E-value=5.2e-11  Score=111.10  Aligned_cols=119  Identities=18%  Similarity=0.320  Sum_probs=94.0

Q ss_pred             CHHHHHHHHHHHhh---hCC-CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          104 SPDQAQLLAMLVQI---LGA-QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       104 ~~~~~~lL~~l~~~---~~~-~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      .|++..++......   .++ .+|||+|||+               |..++.++...+ +.+|+++|+++++++.|++++
T Consensus        95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~Gs---------------G~i~l~la~~~~-~~~v~avDis~~al~~a~~n~  158 (284)
T TIGR00536        95 RPETEELVEKALASLISQNPILHILDLGTGS---------------GCIALALAYEFP-NAEVIAVDISPDALAVAEENA  158 (284)
T ss_pred             CCccHHHHHHHHHHhhhcCCCCEEEEEeccH---------------hHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHH
Confidence            45566666665432   222 6899999999               999999999875 689999999999999999999


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHHHHHH
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLL  231 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~~~~~  231 (294)
                      +..++.++++++.+|..+.++       ..+||+|+.+++.                            ..|..+++.+.
T Consensus       159 ~~~~~~~~v~~~~~d~~~~~~-------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~  231 (284)
T TIGR00536       159 EKNQLEHRVEFIQSNLFEPLA-------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAP  231 (284)
T ss_pred             HHcCCCCcEEEEECchhccCc-------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHH
Confidence            999998789999999865321       2479999987540                            13667888888


Q ss_pred             hcccCCeEEEEecc
Q 022597          232 QLIRVGGIIVIDNV  245 (294)
Q Consensus       232 ~lLkpgG~ivid~v  245 (294)
                      +.|+|||++++.--
T Consensus       232 ~~L~~gG~l~~e~g  245 (284)
T TIGR00536       232 DYLKPNGFLVCEIG  245 (284)
T ss_pred             HhccCCCEEEEEEC
Confidence            99999999987643

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02366 spermidine synthase

Probab=99.28  E-value=1.2e-10  Score=110.34  Aligned_cols=106  Identities=23%  Similarity=0.365  Sum_probs=87.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C-CCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l-~~~v~~~~gd  194 (294)
                      .++++||+||||.               |.....+++. +...+|+.||+|++.++.|++++...+  + ++|++++.+|
T Consensus        90 ~~pkrVLiIGgG~---------------G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D  153 (308)
T PLN02366         90 PNPKKVLVVGGGD---------------GGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD  153 (308)
T ss_pred             CCCCeEEEEcCCc---------------cHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh
Confidence            4678999999999               9988888875 545789999999999999999987642  3 3589999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.+.++...    .++||+||+|...+       ...++++.+.+.|+|||+++..
T Consensus       154 a~~~l~~~~----~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        154 GVEFLKNAP----EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             HHHHHhhcc----CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            998876531    36899999997532       2568999999999999999764

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.28  E-value=3.2e-11  Score=119.31  Aligned_cols=121  Identities=18%  Similarity=0.244  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +......+...++...++++|||+|||+               |..++.++..++.+++|+++|+++++++.+++++++.
T Consensus       234 vqd~~s~l~~~~l~~~~g~~VLDlgaG~---------------G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~  298 (445)
T PRK14904        234 VQNPTQALACLLLNPQPGSTVLDLCAAP---------------GGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL  298 (445)
T ss_pred             EeCHHHHHHHHhcCCCCCCEEEEECCCC---------------CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh
Confidence            3334445555566666778999999999               9999999988776789999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccCC
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVG  237 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkpg  237 (294)
                      |+. +++++.+|+.+..+       .++||.||+|++..                         ....++..+.+.|+||
T Consensus       299 g~~-~v~~~~~Da~~~~~-------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg  370 (445)
T PRK14904        299 GIT-IIETIEGDARSFSP-------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG  370 (445)
T ss_pred             CCC-eEEEEeCccccccc-------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            986 69999999876531       46899999996521                         1235788889999999


Q ss_pred             eEEEEeccc
Q 022597          238 GIIVIDNVL  246 (294)
Q Consensus       238 G~ivid~vl  246 (294)
                      |.+++....
T Consensus       371 G~lvystcs  379 (445)
T PRK14904        371 GVLVYATCS  379 (445)
T ss_pred             cEEEEEeCC
Confidence            999998763

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.28  E-value=2.2e-10  Score=104.94  Aligned_cols=98  Identities=22%  Similarity=0.323  Sum_probs=80.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..++.++.. + ..+|+++|+|+.+++.|+++++.+++.+++++..++   
T Consensus       118 ~~~~~VLDiGcGs---------------G~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~---  177 (250)
T PRK00517        118 LPGKTVLDVGCGS---------------GILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD---  177 (250)
T ss_pred             CCCCEEEEeCCcH---------------HHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC---
Confidence            3567999999999               9988876653 2 346999999999999999999999886666554332   


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                                 .+||+|+.+........+++.+.+.|+|||.+++..+.
T Consensus       178 -----------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        178 -----------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             -----------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence                       26999998876666788899999999999999998663

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.28  E-value=2.7e-11  Score=95.31  Aligned_cols=93  Identities=23%  Similarity=0.341  Sum_probs=75.5

Q ss_pred             EEEEccccccccccccccccCCCcHHHHHHHHHCCC--CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          123 CIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       123 vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~--~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      |||+|||+               |..+..++...+.  ..+++++|+++++++.++++.+..+.  +++++++|+.+. +
T Consensus         1 ILDlgcG~---------------G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~   62 (101)
T PF13649_consen    1 ILDLGCGT---------------GRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-P   62 (101)
T ss_dssp             -EEET-TT---------------SHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-H
T ss_pred             CEEeecCC---------------cHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-c
Confidence            79999999               9999999998733  37999999999999999999998776  699999999874 3


Q ss_pred             HHhhcCCCCceeEEEEc-C-----CccchHHHHHHHHhcccCCe
Q 022597          201 ALILNGEASSYDFAFVD-A-----EKRMYQEYFELLLQLIRVGG  238 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD-~-----~~~~~~~~~~~~~~lLkpgG  238 (294)
                      ..     .++||+|+.- .     ++.....+++.+.++|+|||
T Consensus        63 ~~-----~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   63 FS-----DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             HH-----SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             cc-----CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            33     5799999983 2     25567899999999999998

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.27  E-value=3.1e-11  Score=115.05  Aligned_cols=104  Identities=13%  Similarity=0.156  Sum_probs=85.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+.+|||||||+               |..+..+++.   +++|+++|.++++++.|+++.+..+...+++++++++.+.
T Consensus       131 ~g~~ILDIGCG~---------------G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l  192 (322)
T PLN02396        131 EGLKFIDIGCGG---------------GLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL  192 (322)
T ss_pred             CCCEEEEeeCCC---------------CHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh
Confidence            456999999999               9999888762   6799999999999999999887766666899999998664


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ...      .++||+|+....   ..+...+++.+.++|||||.+++..+.
T Consensus       193 ~~~------~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        193 ADE------GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             hhc------cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            221      478999986432   345678999999999999999998753

>TIGR00417 speE spermidine synthase

Probab=99.27  E-value=1.6e-10  Score=107.18  Aligned_cols=105  Identities=17%  Similarity=0.247  Sum_probs=85.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C-CCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l-~~~v~~~~gd  194 (294)
                      .++++||+||||+               |..+..++... +..+++++|++++.++.+++++...+  + ..+++++.+|
T Consensus        71 ~~p~~VL~iG~G~---------------G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D  134 (270)
T TIGR00417        71 PNPKHVLVIGGGD---------------GGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD  134 (270)
T ss_pred             CCCCEEEEEcCCc---------------hHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc
Confidence            3567999999999               98888777654 35789999999999999999986543  1 3579999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCcc-----c--hHHHHHHHHhcccCCeEEEEe
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKR-----M--YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~-----~--~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.+.++..     .++||+|++|....     .  ..++++.+.+.|+|||++++.
T Consensus       135 ~~~~l~~~-----~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       135 GFKFLADT-----ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             hHHHHHhC-----CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            98887654     57999999987511     1  468899999999999999986

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.26  E-value=4.5e-11  Score=105.81  Aligned_cols=103  Identities=13%  Similarity=0.210  Sum_probs=82.5

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++.+|||+|||+               |..++.++..   +.+|+++|+++++++.++++.+..++. ++++..+|..
T Consensus        28 ~~~~~~vLDiGcG~---------------G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~   88 (197)
T PRK11207         28 VVKPGKTLDLGCGN---------------GRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLN   88 (197)
T ss_pred             cCCCCcEEEECCCC---------------CHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChh
Confidence            44567999999999               9999999874   579999999999999999999988885 5888888875


Q ss_pred             hhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEE-Eecc
Q 022597          197 DSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIV-IDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~iv-id~v  245 (294)
                      +..  +     .++||+|+...     +......+++.+.++|+|||.++ +..+
T Consensus        89 ~~~--~-----~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~  136 (197)
T PRK11207         89 NLT--F-----DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM  136 (197)
T ss_pred             hCC--c-----CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence            431  1     36799998643     23457899999999999999954 4433

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.26  E-value=1.1e-11  Score=94.24  Aligned_cols=92  Identities=22%  Similarity=0.337  Sum_probs=74.1

Q ss_pred             EEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHh
Q 022597          124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  203 (294)
Q Consensus       124 LEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~  203 (294)
                      ||+|||+               |..+..++..  ++.+|+++|+++++++.+++..+..    ++.+..+|..+. + + 
T Consensus         1 LdiG~G~---------------G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l-~-~-   56 (95)
T PF08241_consen    1 LDIGCGT---------------GRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL-P-F-   56 (95)
T ss_dssp             EEET-TT---------------SHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS-S-S-
T ss_pred             CEecCcC---------------CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC-c-c-
Confidence            7999999               9999999997  4789999999999999999987643    456999998765 2 1 


Q ss_pred             hcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEE
Q 022597          204 LNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       204 ~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                         ++++||+|+....   .++...+++.+.+.|||||.+++
T Consensus        57 ---~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   57 ---PDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             ----TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---ccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence               2689999987642   36788999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.26  E-value=1.1e-10  Score=109.34  Aligned_cols=104  Identities=21%  Similarity=0.321  Sum_probs=87.0

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++|||+|||+               |..++.+++. + ..+|+++|+++.+++.|+++++.+++.+++++..++...
T Consensus       158 ~~g~~VLDvGcGs---------------G~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~  220 (288)
T TIGR00406       158 LKDKNVIDVGCGS---------------GILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ  220 (288)
T ss_pred             CCCCEEEEeCCCh---------------hHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc
Confidence            3568999999999               9999887763 3 469999999999999999999999998888888776321


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .        ..++||+|+.+.....+..+++.+.+.|+|||.+++..++
T Consensus       221 ~--------~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       221 P--------IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             c--------cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            1        1468999999877666788999999999999999998764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.26  E-value=2.7e-10  Score=100.71  Aligned_cols=110  Identities=14%  Similarity=0.097  Sum_probs=88.2

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ...+.+|||++||+               |..++.++...  ..+|+++|.+++.++.++++++.+++.++++++.+|+.
T Consensus        47 ~~~g~~vLDLfaGs---------------G~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~  109 (189)
T TIGR00095        47 EIQGAHLLDVFAGS---------------GLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL  109 (189)
T ss_pred             hcCCCEEEEecCCC---------------cHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence            34678999999999               98888887753  35899999999999999999999999888999999998


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHH--hcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLL--QLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~--~lLkpgG~ivid~v  245 (294)
                      +.++.+...  ...||+||.|++  ...+.+.++.+.  .+|+++|++++..-
T Consensus       110 ~~l~~~~~~--~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~  160 (189)
T TIGR00095       110 RALKFLAKK--PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED  160 (189)
T ss_pred             HHHHHhhcc--CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            877654211  235899999997  344667777665  47999999998643

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.25  E-value=1.1e-10  Score=105.20  Aligned_cols=116  Identities=22%  Similarity=0.398  Sum_probs=91.2

Q ss_pred             CHHHHHHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          104 SPDQAQLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .|++..++..+....  ++.+|||+|||+               |..+..++...+ +.+++++|+++++++.|+++++.
T Consensus        70 ~~~~~~l~~~~l~~~~~~~~~ilDig~G~---------------G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~  133 (251)
T TIGR03534        70 RPDTEELVEAALERLKKGPLRVLDLGTGS---------------GAIALALAKERP-DARVTAVDISPEALAVARKNAAR  133 (251)
T ss_pred             CCChHHHHHHHHHhcccCCCeEEEEeCcH---------------hHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence            344555555555433  345899999999               999999998875 67999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-----------------------------chHHHHHHHHh
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------------------------MYQEYFELLLQ  232 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-----------------------------~~~~~~~~~~~  232 (294)
                      .++. +++++++|+.+..+       .++||+|+.+++-.                             .+..+++.+.+
T Consensus       134 ~~~~-~~~~~~~d~~~~~~-------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~  205 (251)
T TIGR03534       134 LGLD-NVTFLQSDWFEPLP-------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR  205 (251)
T ss_pred             cCCC-eEEEEECchhccCc-------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence            8886 69999999875321       47899999875410                             13467888899


Q ss_pred             cccCCeEEEEe
Q 022597          233 LIRVGGIIVID  243 (294)
Q Consensus       233 lLkpgG~ivid  243 (294)
                      .|+|||.+++.
T Consensus       206 ~L~~gG~~~~~  216 (251)
T TIGR03534       206 LLKPGGWLLLE  216 (251)
T ss_pred             hcccCCEEEEE
Confidence            99999999885

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.25  E-value=7.9e-11  Score=112.28  Aligned_cols=116  Identities=24%  Similarity=0.353  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..|..-..+...+.+.++.+|||+|||+               |+.+..+++..+..++|+++|.++++++.|+++++..
T Consensus        64 ~~p~l~a~ll~~L~i~~g~~VLDIG~Gt---------------G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~  128 (322)
T PRK13943         64 SQPSLMALFMEWVGLDKGMRVLEIGGGT---------------GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL  128 (322)
T ss_pred             CcHHHHHHHHHhcCCCCCCEEEEEeCCc---------------cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3454433333344556678999999999               9999999998765678999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |.. +++++++|+.+..+.      .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       129 g~~-nV~~i~gD~~~~~~~------~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        129 GIE-NVIFVCGDGYYGVPE------FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CCC-cEEEEeCChhhcccc------cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence            984 699999998765432      3579999998764433   34567889999998874

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.25  E-value=6.2e-11  Score=115.20  Aligned_cols=118  Identities=10%  Similarity=0.118  Sum_probs=91.1

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .++.+..-++..+-. ....+|||+|||+               |..++.+++..| +.+|+++|.|+.+++.|+++++.
T Consensus       212 ~LD~GtrllL~~lp~-~~~~~VLDLGCGt---------------Gvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~  274 (378)
T PRK15001        212 GLDIGARFFMQHLPE-NLEGEIVDLGCGN---------------GVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVET  274 (378)
T ss_pred             CcChHHHHHHHhCCc-ccCCeEEEEeccc---------------cHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence            345555444444432 2345999999999               999999999876 78999999999999999999998


Q ss_pred             hCCC--CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEEe
Q 022597          182 AGVS--HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       182 ~gl~--~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--------~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++..  .++++..+|..+.++       .++||+|+.+++-        ....++|..+.+.|+|||.+++-
T Consensus       275 n~~~~~~~v~~~~~D~l~~~~-------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        275 NMPEALDRCEFMINNALSGVE-------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             cCcccCceEEEEEccccccCC-------CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            8754  378999888754321       3589999998661        12457888899999999998875

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.25  E-value=1.1e-10  Score=109.47  Aligned_cols=123  Identities=22%  Similarity=0.294  Sum_probs=91.8

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +-.||...=.++.+...+++||++-|||               |..+++.+..-  ..+|++||.|...++.|++|++.+
T Consensus       107 lFlDqR~nR~~v~~~~~gkrvLnlFsYT---------------Ggfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lN  169 (286)
T PF10672_consen  107 LFLDQRENRKWVRKYAKGKRVLNLFSYT---------------GGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALN  169 (286)
T ss_dssp             S-GGGHHHHHHHHHHCTTCEEEEET-TT---------------THHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHT
T ss_pred             EcHHHHhhHHHHHHHcCCCceEEecCCC---------------CHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHc
Confidence            3344444444445556678999999999               88888766531  358999999999999999999999


Q ss_pred             CCC-CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          183 GVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       183 gl~-~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      |++ ++++++.+|+.+.++.+..   .++||+|++|++         ..+|.+++..+.++|+|||++++...
T Consensus       170 g~~~~~~~~~~~Dvf~~l~~~~~---~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  170 GLDLDRHRFIQGDVFKFLKRLKK---GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             T-CCTCEEEEES-HHHHHHHHHH---TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             CCCccceEEEecCHHHHHHHHhc---CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            986 6899999999998877543   468999999988         34688999999999999999887655

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.24  E-value=1.6e-10  Score=101.87  Aligned_cols=124  Identities=24%  Similarity=0.411  Sum_probs=91.9

Q ss_pred             CCHHHHHHHHHHHhh-hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQI-LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       103 v~~~~~~lL~~l~~~-~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.-...+..++-.. ..+.++||+-|||               |..++..+..  ...+|+.||.|++.++..++|++.
T Consensus        25 ~drvrealFniL~~~~~~g~~vLDLFaGS---------------GalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~   87 (183)
T PF03602_consen   25 TDRVREALFNILQPRNLEGARVLDLFAGS---------------GALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEK   87 (183)
T ss_dssp             SHHHHHHHHHHHHCH-HTT-EEEETT-TT---------------SHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhcccccCCCeEEEcCCcc---------------CccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHH
Confidence            333345555555555 6788999999988               8888765543  247999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccc-hHHHHHHHH--hcccCCeEEEEecc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRM-YQEYFELLL--QLIRVGGIIVIDNV  245 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~-~~~~~~~~~--~lLkpgG~ivid~v  245 (294)
                      .+..++++++.+|+...+..+...  ..+||+||+|++  ... +.+.++.+.  .+|+++|+|++..-
T Consensus        88 l~~~~~~~v~~~d~~~~l~~~~~~--~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~  154 (183)
T PF03602_consen   88 LGLEDKIRVIKGDAFKFLLKLAKK--GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHS  154 (183)
T ss_dssp             HT-GGGEEEEESSHHHHHHHHHHC--TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             hCCCcceeeeccCHHHHHHhhccc--CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence            999999999999998888766432  589999999997  333 488888887  79999999998653

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK14968 putative methyltransferase; Provisional

Probab=99.24  E-value=1.5e-10  Score=99.66  Aligned_cols=110  Identities=16%  Similarity=0.245  Sum_probs=86.5

Q ss_pred             HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc-
Q 022597          109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-  187 (294)
Q Consensus       109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~-  187 (294)
                      .++.......+++++||+|||+               |..+..++..   +.+++++|+++++++.++++++..++.++ 
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~---------------G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~   74 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGS---------------GIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNG   74 (188)
T ss_pred             HHHHHhhhccCCCEEEEEcccc---------------CHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcc
Confidence            3444444446778999999999               9999988876   58999999999999999999999888655 


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc------------------------cchHHHHHHHHhcccCCeEEEEe
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEK------------------------RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~------------------------~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.++++|..+.+.       ..+||+|+.+++-                        ..+..+++.+.+.|+|||.+++-
T Consensus        75 ~~~~~~d~~~~~~-------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968         75 VEVIRSDLFEPFR-------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             eEEEecccccccc-------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            8899888765321       3489999987531                        11456789999999999988763

>PRK04266 fibrillarin; Provisional

Probab=99.24  E-value=9.3e-11  Score=106.54  Aligned_cols=116  Identities=14%  Similarity=0.165  Sum_probs=88.3

Q ss_pred             HHHHHHHH--HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597          107 QAQLLAML--VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV  184 (294)
Q Consensus       107 ~~~lL~~l--~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl  184 (294)
                      .+.+++.+  +.+.++.+|||+|||+               |..+..++...+ .++|+++|+++++++.+.++++..  
T Consensus        58 ~~~ll~~~~~l~i~~g~~VlD~G~G~---------------G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--  119 (226)
T PRK04266         58 AAAILKGLKNFPIKKGSKVLYLGAAS---------------GTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--  119 (226)
T ss_pred             HHHHHhhHhhCCCCCCCEEEEEccCC---------------CHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--
Confidence            34444434  5566778999999999               999999999886 789999999999999887776642  


Q ss_pred             CCcEEEEEcchhhhH--HHHhhcCCCCceeEEEEcCCcc-chHHHHHHHHhcccCCeEEEEecccC
Q 022597          185 SHKVKIKHGLAADSL--KALILNGEASSYDFAFVDAEKR-MYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       185 ~~~v~~~~gda~~~l--~~l~~~~~~~~fD~vfiD~~~~-~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                       .++.++.+|+.+..  ..+     .++||+||.|.... .....++.+.+.|||||.+++. +-|
T Consensus       120 -~nv~~i~~D~~~~~~~~~l-----~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~-v~~  178 (226)
T PRK04266        120 -KNIIPILADARKPERYAHV-----VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA-IKA  178 (226)
T ss_pred             -CCcEEEECCCCCcchhhhc-----cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE-Eec
Confidence             46899999986421  112     35699999887532 2345688999999999999986 444

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.24  E-value=6.7e-11  Score=118.96  Aligned_cols=101  Identities=20%  Similarity=0.333  Sum_probs=84.6

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      +.+|||+|||+               |..++.++...+ +++|+++|+|+++++.|+++++.+++.++++++.+|..+.+
T Consensus       139 ~~~VLDlG~Gs---------------G~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~  202 (506)
T PRK01544        139 FLNILELGTGS---------------GCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI  202 (506)
T ss_pred             CCEEEEccCch---------------hHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC
Confidence            45899999999               999999998876 68999999999999999999999999889999999986532


Q ss_pred             HHHhhcCCCCceeEEEEcCCc-----------------------------cchHHHHHHHHhcccCCeEEEEe
Q 022597          200 KALILNGEASSYDFAFVDAEK-----------------------------RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~-----------------------------~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +       .++||+|+.+++-                             ..|..+++.+.+.|+|||.+++.
T Consensus       203 ~-------~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        203 E-------KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             c-------CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            1       3589999986530                             12556677778899999999885

>PRK08317 hypothetical protein; Provisional

Probab=99.24  E-value=1.9e-10  Score=101.77  Aligned_cols=116  Identities=21%  Similarity=0.279  Sum_probs=90.7

Q ss_pred             HHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEE
Q 022597          112 AMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  191 (294)
Q Consensus       112 ~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~  191 (294)
                      ...+.+.++.+|||+|||+               |..+..++...++.++++++|+++++++.++++..  +...++++.
T Consensus        12 ~~~~~~~~~~~vLdiG~G~---------------G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~   74 (241)
T PRK08317         12 FELLAVQPGDRVLDVGCGP---------------GNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFV   74 (241)
T ss_pred             HHHcCCCCCCEEEEeCCCC---------------CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEE
Confidence            3344556677999999999               99999999887557899999999999999998833  334578999


Q ss_pred             EcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597          192 HGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       192 ~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      .+|+.+..  +    ..++||+|+....   ..+...+++.+.+.|+|||.+++....|...
T Consensus        75 ~~d~~~~~--~----~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  130 (241)
T PRK08317         75 RGDADGLP--F----PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTL  130 (241)
T ss_pred             ecccccCC--C----CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCce
Confidence            88875431  1    1478999987643   3467889999999999999999987655443

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.24  E-value=7.4e-11  Score=104.26  Aligned_cols=101  Identities=20%  Similarity=0.277  Sum_probs=79.9

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      +...++.+|||+|||+               |..+.+++..   +.+|+++|+++.+++.++++.+..|+.  +++...|
T Consensus        26 ~~~~~~~~vLDiGcG~---------------G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d   85 (195)
T TIGR00477        26 VKTVAPCKTLDLGCGQ---------------GRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYD   85 (195)
T ss_pred             hccCCCCcEEEeCCCC---------------CHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEecc
Confidence            3444567999999999               9999999873   579999999999999999999888874  7777777


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEE
Q 022597          195 AADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ....  .+     .++||+|+...     +......+++.+.+.|+|||++++
T Consensus        86 ~~~~--~~-----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli  131 (195)
T TIGR00477        86 INAA--AL-----NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI  131 (195)
T ss_pred             chhc--cc-----cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence            6432  11     35799997642     234677899999999999998554

Part of a tellurite-reducing operon tehA and tehB

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.24  E-value=7.2e-11  Score=104.24  Aligned_cols=123  Identities=20%  Similarity=0.340  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHHh-hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQ-ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       103 v~~~~~~lL~~l~~-~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.-...+..++.+ ...+.+|||+-+|+               |..++.  ...+...+++.||.|.+.+...++|++.
T Consensus        26 ~drVREalFNil~~~~i~g~~~LDlFAGS---------------GaLGlE--AlSRGA~~~~~vE~~~~a~~~l~~N~~~   88 (187)
T COG0742          26 TDRVREALFNILAPDEIEGARVLDLFAGS---------------GALGLE--ALSRGAARVVFVEKDRKAVKILKENLKA   88 (187)
T ss_pred             chHHHHHHHHhccccccCCCEEEEecCCc---------------cHhHHH--HHhCCCceEEEEecCHHHHHHHHHHHHH
Confidence            33334444455544 25556666666665               555554  4444467999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHH----hcccCCeEEEEecc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLL----QLIRVGGIIVIDNV  245 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~----~lLkpgG~ivid~v  245 (294)
                      .+...+++++.+|+...++.+..   .++||+||+|++  +..+......+.    .+|+|+|.+++..-
T Consensus        89 l~~~~~~~~~~~da~~~L~~~~~---~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~  155 (187)
T COG0742          89 LGLEGEARVLRNDALRALKQLGT---REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD  155 (187)
T ss_pred             hCCccceEEEeecHHHHHHhcCC---CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence            99989999999999977766521   235999999998  334433333333    67999999998654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.23  E-value=6.9e-11  Score=107.82  Aligned_cols=99  Identities=16%  Similarity=0.249  Sum_probs=81.6

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.+|||||||+               |..+..++...+ +++|+++|+++.+++.|++++      .++.++.+|+
T Consensus        28 ~~~~~~~vLDiGcG~---------------G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~   85 (258)
T PRK01683         28 PLENPRYVVDLGCGP---------------GNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADI   85 (258)
T ss_pred             CCcCCCEEEEEcccC---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECch
Confidence            344567999999999               999999998875 689999999999999998764      2578899998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+..+       .++||+|+....   ..+...+++.+.+.|+|||.+++.
T Consensus        86 ~~~~~-------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         86 ASWQP-------PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             hccCC-------CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            65421       468999998754   345788999999999999999885

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.22  E-value=1.3e-10  Score=109.11  Aligned_cols=116  Identities=16%  Similarity=0.160  Sum_probs=93.4

Q ss_pred             HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcE
Q 022597          109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  188 (294)
Q Consensus       109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v  188 (294)
                      +.+.......+.++|||||||+               |..+..+++..| +.+++++|. +++++.+++++++.|+.+++
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~---------------G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv  201 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGI---------------GDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRM  201 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCch---------------hHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceE
Confidence            3344444556778999999999               999999999986 789999998 78999999999999999999


Q ss_pred             EEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          189 KIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      +++.+|+.+.  .      ...+|.|++..     +......+++.+.+.|+|||.+++.++.+..
T Consensus       202 ~~~~~d~~~~--~------~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~  259 (306)
T TIGR02716       202 RGIAVDIYKE--S------YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD  259 (306)
T ss_pred             EEEecCccCC--C------CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            9999998642  1      13479886543     2334567899999999999999998886643

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.20  E-value=8.4e-11  Score=107.55  Aligned_cols=96  Identities=16%  Similarity=0.185  Sum_probs=78.8

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++.+|||+|||+               |..+..++...| +++|+++|+++.+++.|++.        +++++.+|+.
T Consensus        27 ~~~~~~vLDlGcG~---------------G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~   82 (255)
T PRK14103         27 AERARRVVDLGCGP---------------GNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVR   82 (255)
T ss_pred             CCCCCEEEEEcCCC---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChh
Confidence            34567999999999               999999998875 68999999999999998652        4788899986


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597          197 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +..+       .++||+|+....   ..+....++.+.+.|+|||.+++.
T Consensus        83 ~~~~-------~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         83 DWKP-------KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             hCCC-------CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            5421       468999998643   345678899999999999999985

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.20  E-value=8.2e-11  Score=107.20  Aligned_cols=105  Identities=19%  Similarity=0.298  Sum_probs=86.7

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+.+|||||||-               |..+..+|+.   +..||++|.+++.+++|+....+.|+.  +.+.+..+.+
T Consensus        58 l~g~~vLDvGCGg---------------G~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~ed  117 (243)
T COG2227          58 LPGLRVLDVGCGG---------------GILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVED  117 (243)
T ss_pred             CCCCeEEEecCCc---------------cHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHH
Confidence            4677999999999               9999999985   589999999999999999999999885  7777777766


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          198 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      ....      .++||+|..---   .++...++..|.+++||||++++..+..+
T Consensus       118 l~~~------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt  165 (243)
T COG2227         118 LASA------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT  165 (243)
T ss_pred             HHhc------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence            5432      389999975321   34567799999999999999999988643

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.19  E-value=1.4e-10  Score=107.20  Aligned_cols=107  Identities=12%  Similarity=0.194  Sum_probs=85.2

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      +.+.++.+|||||||+               |..+..++...  +++|+++|+++++++.|+++...   .+++++..+|
T Consensus        48 l~l~~~~~VLDiGcG~---------------G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D  107 (263)
T PTZ00098         48 IELNENSKVLDIGSGL---------------GGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEAND  107 (263)
T ss_pred             CCCCCCCEEEEEcCCC---------------ChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECC
Confidence            3556778999999999               99888887753  57999999999999999987653   4579999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEc-C----CccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          195 AADSLKALILNGEASSYDFAFVD-A----EKRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD-~----~~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      +.+..  +    +.++||+|+.. .    +..+...+++.+.++|+|||.+++.+...
T Consensus       108 ~~~~~--~----~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        108 ILKKD--F----PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             cccCC--C----CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            86421  1    24789999873 2    22467889999999999999999987643

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.19  E-value=1.9e-10  Score=109.51  Aligned_cols=117  Identities=20%  Similarity=0.281  Sum_probs=97.0

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.|..+..+..++...++.+|||.|||+               |...+..+..   +.+++++|+++++++.|+++++.
T Consensus       165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGt---------------G~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~  226 (329)
T TIGR01177       165 SMDPKLARAMVNLARVTEGDRVLDPFCGT---------------GGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEH  226 (329)
T ss_pred             CCCHHHHHHHHHHhCCCCcCEEEECCCCC---------------CHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHH
Confidence            56788888888888888888999999999               9877765543   67999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEe
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +|+.+ +++..+|+.+....      .++||.|+.|++-            ..|.++++.+.+.|+|||.+++-
T Consensus       227 ~g~~~-i~~~~~D~~~l~~~------~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       227 YGIED-FFVKRGDATKLPLS------SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             hCCCC-CeEEecchhcCCcc------cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence            99986 89999999764211      4689999999651            22688999999999999998764

This family is found exclusively in the Archaea.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.18  E-value=5.1e-10  Score=102.99  Aligned_cols=100  Identities=17%  Similarity=0.202  Sum_probs=80.4

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      +.+|||+|||+               |..++.++...+ +.+|+++|+|+++++.|+++++.+|    ++++.+|..+.+
T Consensus        87 ~~~vLDlg~Gs---------------G~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l  146 (251)
T TIGR03704        87 TLVVVDLCCGS---------------GAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDAL  146 (251)
T ss_pred             CCEEEEecCch---------------HHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhc
Confidence            35899999999               999999998765 5789999999999999999998866    378899987654


Q ss_pred             HHHhhcCCCCceeEEEEcCCcc-----------------------------chHHHHHHHHhcccCCeEEEEe
Q 022597          200 KALILNGEASSYDFAFVDAEKR-----------------------------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~~-----------------------------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +...    .++||+|+.|++.-                             .+..+++.+.++|+|||.+++.
T Consensus       147 ~~~~----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       147 PTAL----RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             chhc----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            3321    35799999987510                             0456777778999999999876

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.18  E-value=2.9e-10  Score=101.12  Aligned_cols=106  Identities=18%  Similarity=0.245  Sum_probs=88.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...+...+++++|+++++++.+++++...++..+++++.+|+.+.
T Consensus        51 ~~~~vldiG~G~---------------G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  115 (239)
T PRK00216         51 PGDKVLDLACGT---------------GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL  115 (239)
T ss_pred             CCCeEEEeCCCC---------------CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence            456999999999               99999999987656899999999999999999998877777899999998664


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..      +.++||+|+....   ..+...+++.+.++|+|||.+++-+.
T Consensus       116 ~~------~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        116 PF------PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             CC------CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            21      1468999987532   44678899999999999999887544

>PRK14967 putative methyltransferase; Provisional

Probab=99.18  E-value=4e-10  Score=101.28  Aligned_cols=99  Identities=18%  Similarity=0.271  Sum_probs=80.0

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+..+|||+|||+               |..++.++.. + ..+++++|+++++++.++++++..++  +++++.+|..+
T Consensus        35 ~~~~~vLDlGcG~---------------G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~   95 (223)
T PRK14967         35 GPGRRVLDLCTGS---------------GALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWAR   95 (223)
T ss_pred             CCCCeEEEecCCH---------------HHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhh
Confidence            4457999999999               9998888874 2 35999999999999999999998887  48899998865


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCcc------------------------chHHHHHHHHhcccCCeEEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~------------------------~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .++       .++||+|+.+++..                        .+..+++.+.++|+|||.+++
T Consensus        96 ~~~-------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~  157 (223)
T PRK14967         96 AVE-------FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL  157 (223)
T ss_pred             hcc-------CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            422       46899999985410                        145677888999999999986

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.18  E-value=6.2e-10  Score=105.41  Aligned_cols=121  Identities=19%  Similarity=0.096  Sum_probs=89.9

Q ss_pred             CCCCCCHHHHHHHHHH----HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH
Q 022597           99 SQMQVSPDQAQLLAML----VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV  174 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l----~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~  174 (294)
                      +..++.+.+++.+...    +...++.+|||+|||+               |..++.++..   +.+|+++|.++++++.
T Consensus       149 sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~---------------G~~sl~la~~---~~~V~gvD~s~~av~~  210 (315)
T PRK03522        149 SFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGV---------------GGFGLHCATP---GMQLTGIEISAEAIAC  210 (315)
T ss_pred             eeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHhc---CCEEEEEeCCHHHHHH
Confidence            3456666655554432    2223568999999999               9999999873   5799999999999999


Q ss_pred             HHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       175 A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |+++++.+|+ ++++++.+|+.+.....     .++||+|++|++.......+......++|++++++.
T Consensus       211 A~~n~~~~~l-~~v~~~~~D~~~~~~~~-----~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs  273 (315)
T PRK03522        211 AKQSAAELGL-TNVQFQALDSTQFATAQ-----GEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSS  273 (315)
T ss_pred             HHHHHHHcCC-CceEEEEcCHHHHHHhc-----CCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence            9999999998 57999999998765432     357999999998655433333333446788777653

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.17  E-value=3.1e-10  Score=104.13  Aligned_cols=116  Identities=19%  Similarity=0.374  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHH---hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          104 SPDQAQLLAMLV---QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       104 ~~~~~~lL~~l~---~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      .|++..++..+.   ...++.+|||+|||+               |..++.++...+ ..+++++|+++++++.|+++++
T Consensus        90 r~~te~l~~~~~~~~~~~~~~~vLDiG~Gs---------------G~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~  153 (275)
T PRK09328         90 RPETEELVEWALEALLLKEPLRVLDLGTGS---------------GAIALALAKERP-DAEVTAVDISPEALAVARRNAK  153 (275)
T ss_pred             CCCcHHHHHHHHHhccccCCCEEEEEcCcH---------------HHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH
Confidence            344455555544   234567999999999               999999999875 6899999999999999999998


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----------------------------cchHHHHHHHH
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------------------------RMYQEYFELLL  231 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----------------------------~~~~~~~~~~~  231 (294)
                       .+...+++++.+|..+.++       .++||+|+.+++-                             ..|..+++.+.
T Consensus       154 -~~~~~~i~~~~~d~~~~~~-------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~  225 (275)
T PRK09328        154 -HGLGARVEFLQGDWFEPLP-------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAP  225 (275)
T ss_pred             -hCCCCcEEEEEccccCcCC-------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHH
Confidence             4455679999999854321       3689999987541                             12566778888


Q ss_pred             hcccCCeEEEEe
Q 022597          232 QLIRVGGIIVID  243 (294)
Q Consensus       232 ~lLkpgG~ivid  243 (294)
                      ++|+|||.+++.
T Consensus       226 ~~Lk~gG~l~~e  237 (275)
T PRK09328        226 RYLKPGGWLLLE  237 (275)
T ss_pred             HhcccCCEEEEE
Confidence            999999999984

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=3.9e-10  Score=105.52  Aligned_cols=117  Identities=19%  Similarity=0.376  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHHH-hhhCCC-eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          104 SPDQAQLLAMLV-QILGAQ-RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       104 ~~~~~~lL~~l~-~~~~~~-~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .|++..++..+. ...... +|||+|||+               |..+++++...+ ..+|+++|+|++.++.|++|++.
T Consensus        93 r~dTe~Lve~~l~~~~~~~~~ilDlGTGS---------------G~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~  156 (280)
T COG2890          93 RPDTELLVEAALALLLQLDKRILDLGTGS---------------GAIAIALAKEGP-DAEVIAVDISPDALALARENAER  156 (280)
T ss_pred             CCchHHHHHHHHHhhhhcCCcEEEecCCh---------------HHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHH
Confidence            567777777643 222222 799999999               999999999887 68999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---cc-------------------------chHHHHHHHHhc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KR-------------------------MYQEYFELLLQL  233 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~-------------------------~~~~~~~~~~~l  233 (294)
                      +|+ .++.++.+|..+.+        .++||+|+.+++   .+                         -|..+++.+...
T Consensus       157 ~~l-~~~~~~~~dlf~~~--------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~  227 (280)
T COG2890         157 NGL-VRVLVVQSDLFEPL--------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDI  227 (280)
T ss_pred             cCC-ccEEEEeeeccccc--------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHH
Confidence            999 66777777665443        468999988765   11                         266777778889


Q ss_pred             ccCCeEEEEecc
Q 022597          234 IRVGGIIVIDNV  245 (294)
Q Consensus       234 LkpgG~ivid~v  245 (294)
                      |+|||++++.--
T Consensus       228 l~~~g~l~le~g  239 (280)
T COG2890         228 LKPGGVLILEIG  239 (280)
T ss_pred             cCCCcEEEEEEC
Confidence            999999987643

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.16  E-value=3.1e-10  Score=105.95  Aligned_cols=100  Identities=18%  Similarity=0.272  Sum_probs=81.6

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.+|||+|||+               |..++.++..   +.+|+++|.|+++++.++++.+..++  ++++...|.
T Consensus       117 ~~~~~~~vLDlGcG~---------------G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~  176 (287)
T PRK12335        117 QTVKPGKALDLGCGQ---------------GRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDI  176 (287)
T ss_pred             hccCCCCEEEeCCCC---------------CHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEech
Confidence            335667999999999               9999998873   57999999999999999999998888  588888877


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEE
Q 022597          196 ADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+..  +     .++||+|+...     .......+++.+.+.|+|||++++
T Consensus       177 ~~~~--~-----~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        177 NSAS--I-----QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             hccc--c-----cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            5421  1     47899998653     235678899999999999999655

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=1.9e-10  Score=108.27  Aligned_cols=112  Identities=20%  Similarity=0.299  Sum_probs=86.4

Q ss_pred             HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcE
Q 022597          109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  188 (294)
Q Consensus       109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v  188 (294)
                      ++|..+.+  ++++|||+|||+               |..+++.++--  ..+++++|+||..++.|++|++.+++...+
T Consensus       154 ~~Le~~~~--~g~~vlDvGcGS---------------GILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~  214 (300)
T COG2264         154 EALEKLLK--KGKTVLDVGCGS---------------GILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLV  214 (300)
T ss_pred             HHHHHhhc--CCCEEEEecCCh---------------hHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhh
Confidence            44444444  788999999999               98888877742  467999999999999999999999998644


Q ss_pred             EEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          189 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +....+..+...       .++||+|+.+---+-...+.+.+.++++|||++++..++
T Consensus       215 ~~~~~~~~~~~~-------~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         215 QAKGFLLLEVPE-------NGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             hcccccchhhcc-------cCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence            444333332221       369999998865555667888889999999999999774

>PLN02823 spermine synthase

Probab=99.15  E-value=1e-09  Score=105.28  Aligned_cols=104  Identities=14%  Similarity=0.243  Sum_probs=84.8

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC---CCCcEEEEEcch
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLA  195 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g---l~~~v~~~~gda  195 (294)
                      ++++||.||+|.               |..+..+++.. +..+|+.||+|++.++.|++++...+   -.++++++.+|+
T Consensus       103 ~pk~VLiiGgG~---------------G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da  166 (336)
T PLN02823        103 NPKTVFIMGGGE---------------GSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA  166 (336)
T ss_pred             CCCEEEEECCCc---------------hHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh
Confidence            678999999999               98888777743 35789999999999999999986432   247899999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCcc---------chHHHHH-HHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKR---------MYQEYFE-LLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~---------~~~~~~~-~~~~lLkpgG~ivid  243 (294)
                      ...++..     .++||+||+|...+         ...++++ .+.+.|+|||++++.
T Consensus       167 ~~~L~~~-----~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        167 RAELEKR-----DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             HHHHhhC-----CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            9988653     57899999995421         1457888 899999999999864

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.15  E-value=4.3e-10  Score=107.13  Aligned_cols=110  Identities=15%  Similarity=0.156  Sum_probs=84.9

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ....+++|||||||+               |+.+..++...+  .+|+++|+++.++..++..-+..+...+++++.+++
T Consensus       119 ~~l~g~~VLDIGCG~---------------G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~  181 (322)
T PRK15068        119 SPLKGRTVLDVGCGN---------------GYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI  181 (322)
T ss_pred             CCCCCCEEEEeccCC---------------cHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH
Confidence            335678999999999               999999988643  479999999998876655444444455799999988


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      .+...       .++||+||.-..   ..+...+++.+.+.|+|||.++++.....|
T Consensus       182 e~lp~-------~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~  231 (322)
T PRK15068        182 EQLPA-------LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDG  231 (322)
T ss_pred             HHCCC-------cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence            65421       368999997532   345788999999999999999998765544

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.15  E-value=5.7e-10  Score=108.67  Aligned_cols=103  Identities=21%  Similarity=0.232  Sum_probs=87.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+..+||||||+               |..++.+|...| +..++|+|+++.+++.|.+.+...|+. ++.++.+|+.+.
T Consensus       122 ~~p~vLEIGcGs---------------G~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~l  184 (390)
T PRK14121        122 QEKILIEIGFGS---------------GRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLL  184 (390)
T ss_pred             CCCeEEEEcCcc---------------cHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHh
Confidence            446899999999               999999999986 789999999999999999999999986 599999999876


Q ss_pred             HHHHhhcCCCCceeEEEEcCCcc---------chHHHHHHHHhcccCCeEEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKR---------MYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~---------~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +..+    +.+++|.|+++.+.+         ....+++.+.+.|+|||.+.+
T Consensus       185 l~~~----~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        185 LELL----PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             hhhC----CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence            5443    257999998864311         136899999999999999887

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.14  E-value=5.6e-10  Score=107.27  Aligned_cols=113  Identities=17%  Similarity=0.202  Sum_probs=87.3

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +.+.+..++..+.. ....+|||+|||+               |..+..++...+ +.+|+++|+++.+++.|+++++.+
T Consensus       181 lD~gt~lLl~~l~~-~~~g~VLDlGCG~---------------G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n  243 (342)
T PRK09489        181 LDVGSQLLLSTLTP-HTKGKVLDVGCGA---------------GVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAAN  243 (342)
T ss_pred             CCHHHHHHHHhccc-cCCCeEEEeccCc---------------CHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence            34444444444433 3345899999999               999999998765 678999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEE
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--------~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ++.  .+++.+|..+.   .     .++||+|+.+++-        ....++++.+.+.|+|||.+++
T Consensus       244 ~l~--~~~~~~D~~~~---~-----~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        244 GLE--GEVFASNVFSD---I-----KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             CCC--CEEEEcccccc---c-----CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence            875  46677776432   1     4789999998651        2357889999999999999865

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.14  E-value=5.3e-10  Score=109.72  Aligned_cols=117  Identities=18%  Similarity=0.293  Sum_probs=90.8

Q ss_pred             CHHHHHHHHHHHhh-hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          104 SPDQAQLLAMLVQI-LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       104 ~~~~~~lL~~l~~~-~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      .|++..++..+... .+..+|||+|||+               |..++.++...+ +++++++|+|+++++.|+++++..
T Consensus       235 RpeTE~LVe~aL~~l~~~~rVLDLGcGS---------------G~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~  298 (423)
T PRK14966        235 RPETEHLVEAVLARLPENGRVWDLGTGS---------------GAVAVTVALERP-DAFVRASDISPPALETARKNAADL  298 (423)
T ss_pred             CccHHHHHHHhhhccCCCCEEEEEeChh---------------hHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence            55677777776643 3456999999999               999999988765 789999999999999999999987


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHHHHHHhcc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLI  234 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~~~~~~lL  234 (294)
                      +.  +++++++|..+....     ..++||+|+.+++.                            ..|..+++.+.+.|
T Consensus       299 g~--rV~fi~gDl~e~~l~-----~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L  371 (423)
T PRK14966        299 GA--RVEFAHGSWFDTDMP-----SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL  371 (423)
T ss_pred             CC--cEEEEEcchhccccc-----cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence            75  699999998653110     13579999998751                            01556667777899


Q ss_pred             cCCeEEEEe
Q 022597          235 RVGGIIVID  243 (294)
Q Consensus       235 kpgG~ivid  243 (294)
                      +|||.+++.
T Consensus       372 kpgG~lilE  380 (423)
T PRK14966        372 AEGGFLLLE  380 (423)
T ss_pred             CCCcEEEEE
Confidence            999998763

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.11  E-value=3.6e-10  Score=106.57  Aligned_cols=114  Identities=21%  Similarity=0.344  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhh-hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          107 QAQLLAMLVQI-LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       107 ~~~lL~~l~~~-~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      +.--|..+-+. .++++|||+||||               |..+++.++. + ..+|+++|+||..++.|++|++.+|+.
T Consensus       148 T~lcl~~l~~~~~~g~~vLDvG~GS---------------GILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~  210 (295)
T PF06325_consen  148 TRLCLELLEKYVKPGKRVLDVGCGS---------------GILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVE  210 (295)
T ss_dssp             HHHHHHHHHHHSSTTSEEEEES-TT---------------SHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHhccCCCEEEEeCCcH---------------HHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCC
Confidence            33444444444 4567999999999               9998887774 3 468999999999999999999999999


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      +++++.  ...+.        ..++||+|+.+--..-...+...+.++|+|||++++..++-
T Consensus       211 ~~~~v~--~~~~~--------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  211 DRIEVS--LSEDL--------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             TCEEES--CTSCT--------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred             eeEEEE--Eeccc--------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence            988774  22221        14899999998776666777888889999999999987753

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.11  E-value=6.1e-10  Score=110.47  Aligned_cols=107  Identities=14%  Similarity=0.210  Sum_probs=86.1

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++.+|||||||+               |..+..++...  +++|+++|+++++++.|+++..  +...++++..+|+
T Consensus       263 ~~~~~~~vLDiGcG~---------------G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~  323 (475)
T PLN02336        263 DLKPGQKVLDVGCGI---------------GGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADC  323 (475)
T ss_pred             CCCCCCEEEEEeccC---------------CHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCc
Confidence            345677999999999               99998888765  5799999999999999998775  4556799999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      .+..  +    +.++||+|+....   ..+...+++.+.+.|+|||.+++.+...
T Consensus       324 ~~~~--~----~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        324 TKKT--Y----PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             ccCC--C----CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            6531  1    1468999987532   3457889999999999999999987643

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.09  E-value=2.5e-09  Score=103.70  Aligned_cols=120  Identities=18%  Similarity=0.106  Sum_probs=93.1

Q ss_pred             CCCCCCHHHHHHHHHHH-hh---hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH
Q 022597           99 SQMQVSPDQAQLLAMLV-QI---LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV  174 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~-~~---~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~  174 (294)
                      +..++.+.+.+-|...+ ..   .++.+|||+|||+               |..++.++..   +.+|+++|.++++++.
T Consensus       209 ~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~---------------G~~~l~la~~---~~~v~~vE~~~~av~~  270 (374)
T TIGR02085       209 SFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGV---------------GGFGLHCAGP---DTQLTGIEIESEAIAC  270 (374)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCc---------------cHHHHHHhhc---CCeEEEEECCHHHHHH
Confidence            44677777766665433 22   3567999999999               9999888843   5789999999999999


Q ss_pred             HHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEEe
Q 022597          175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       175 A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |+++++.+|+. +++++.+|+.+.+...     ..+||+||+|++... ..+.++.+. .++|++++++.
T Consensus       271 a~~N~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       271 AQQSAQMLGLD-NLSFAALDSAKFATAQ-----MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             HHHHHHHcCCC-cEEEEECCHHHHHHhc-----CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence            99999999985 7999999998776432     356999999998554 445556664 47899888764

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.1e-09  Score=102.98  Aligned_cols=115  Identities=21%  Similarity=0.309  Sum_probs=94.5

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .++....-++..+-...++ +|||+|||.               |+.++.+++..| ..+++.+|.|...++.|+++++.
T Consensus       142 ~lD~GS~lLl~~l~~~~~~-~vlDlGCG~---------------Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~  204 (300)
T COG2813         142 KLDKGSRLLLETLPPDLGG-KVLDLGCGY---------------GVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAA  204 (300)
T ss_pred             CcChHHHHHHHhCCccCCC-cEEEeCCCc---------------cHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHH
Confidence            4666666666666665555 999999999               999999999987 89999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----cc----hHHHHHHHHhcccCCeEEEE
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----RM----YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----~~----~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ++++.. .+...|..+-.        .++||+|+.+++-    .-    -+++++.+.+.|++||-+.+
T Consensus       205 N~~~~~-~v~~s~~~~~v--------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         205 NGVENT-EVWASNLYEPV--------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             cCCCcc-EEEEecccccc--------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence            998764 77777776543        3589999999872    22    35889999999999998764

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.09  E-value=1.2e-09  Score=96.23  Aligned_cols=103  Identities=22%  Similarity=0.286  Sum_probs=84.0

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...+..++++++|+++.+++.+++++.   ...++++..+|+.+.
T Consensus        39 ~~~~vldiG~G~---------------G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~  100 (223)
T TIGR01934        39 KGQKVLDVACGT---------------GDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEAL  100 (223)
T ss_pred             CCCeEEEeCCCC---------------ChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcC
Confidence            456999999999               99999999988644799999999999999998876   345789999998764


Q ss_pred             HHHHhhcCCCCceeEEEEcC---CccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~---~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..      ..++||+|+...   ...+...+++.+.+.|+|||.+++.+.
T Consensus       101 ~~------~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       101 PF------EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             CC------CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence            31      146899998653   245578899999999999999998654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.08  E-value=1.3e-09  Score=96.70  Aligned_cols=101  Identities=21%  Similarity=0.272  Sum_probs=81.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+.+|||+|||+               |..+..++...+ ..+++++|+++++++.+++.+.     ++++++.+|..+.
T Consensus        34 ~~~~vLDlG~G~---------------G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~   92 (240)
T TIGR02072        34 IPASVLDIGCGT---------------GYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKL   92 (240)
T ss_pred             CCCeEEEECCCc---------------cHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhC
Confidence            456999999999               999999998875 6789999999999998887654     3688999988654


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ..      ..++||+|+....   ..+...+++.+.++|+|||.+++....
T Consensus        93 ~~------~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~  137 (240)
T TIGR02072        93 PL------EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG  137 (240)
T ss_pred             CC------CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            21      1578999998643   235678999999999999999987543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.08  E-value=3.9e-09  Score=94.78  Aligned_cols=118  Identities=15%  Similarity=0.230  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +.|...+++.......++.+|||||||+               |..+..+++.   +.+++++|++++.++.+++++...
T Consensus        32 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~---------------G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~   93 (233)
T PRK05134         32 INPLRLNYIREHAGGLFGKRVLDVGCGG---------------GILSESMARL---GADVTGIDASEENIEVARLHALES   93 (233)
T ss_pred             hhHHHHHHHHHhccCCCCCeEEEeCCCC---------------CHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHc
Confidence            4444455555555555678999999999               9988888764   468999999999999999998876


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.  .+++..++..+.....     .++||+|+....   ..+....++.+.+.|+|||.+++...
T Consensus        94 ~~--~~~~~~~~~~~~~~~~-----~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134         94 GL--KIDYRQTTAEELAAEH-----PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             CC--ceEEEecCHHHhhhhc-----CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence            65  5788888887654322     478999987532   33567889999999999999998653

>PRK03612 spermidine synthase; Provisional

Probab=99.08  E-value=7.3e-10  Score=111.85  Aligned_cols=106  Identities=19%  Similarity=0.304  Sum_probs=84.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH--HHHh---CC-CCcEEEE
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERA---GV-SHKVKIK  191 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~--~~~~---gl-~~~v~~~  191 (294)
                      .++++|||||||+               |..+..+++. ++..+++++|+|+++++.++++  +...   .+ +++++++
T Consensus       296 ~~~~rVL~IG~G~---------------G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi  359 (521)
T PRK03612        296 ARPRRVLVLGGGD---------------GLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVV  359 (521)
T ss_pred             CCCCeEEEEcCCc---------------cHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEE
Confidence            4678999999999               9999888863 4347999999999999999994  3321   22 3589999


Q ss_pred             EcchhhhHHHHhhcCCCCceeEEEEcCCcc--------chHHHHHHHHhcccCCeEEEEec
Q 022597          192 HGLAADSLKALILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       192 ~gda~~~l~~l~~~~~~~~fD~vfiD~~~~--------~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+|+.+.++..     .++||+|++|...+        ...++++.+.+.|+|||++++..
T Consensus       360 ~~Da~~~l~~~-----~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        360 NDDAFNWLRKL-----AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EChHHHHHHhC-----CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            99999887654     57899999996522        13578999999999999999864

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.08  E-value=2.7e-09  Score=105.56  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=92.6

Q ss_pred             CCCCHHHHHHHH-HHHh---hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597          101 MQVSPDQAQLLA-MLVQ---ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK  176 (294)
Q Consensus       101 ~~v~~~~~~lL~-~l~~---~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~  176 (294)
                      .++.+.+.+.+. .+..   ..++.+|||+|||+               |..++.++...   .+|+++|.|+++++.|+
T Consensus       275 ~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGt---------------G~~sl~la~~~---~~V~gvD~s~~al~~A~  336 (443)
T PRK13168        275 IQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGL---------------GNFTLPLARQA---AEVVGVEGVEAMVERAR  336 (443)
T ss_pred             EEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccC---------------CHHHHHHHHhC---CEEEEEeCCHHHHHHHH
Confidence            366777644443 3333   33557999999999               99999998763   68999999999999999


Q ss_pred             HHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          177 KYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       177 ~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++++.+|+. +++++.+|+.+.+.....  ..++||+|++|++.....+.++.+.+ ++|++++++.
T Consensus       337 ~n~~~~~~~-~v~~~~~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        337 ENARRNGLD-NVTFYHANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             HHHHHcCCC-ceEEEEeChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence            999999986 599999999876543211  13579999999986666677766655 6888888775

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.07  E-value=2.6e-09  Score=95.48  Aligned_cols=103  Identities=17%  Similarity=0.255  Sum_probs=78.1

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++.+|||+|||+               |..+..++...+ +.+++|+|+|+++++.|++++.      ++.+..+|+
T Consensus        40 ~~~~~~~VLDiGCG~---------------G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~   97 (204)
T TIGR03587        40 RLPKIASILELGANI---------------GMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP------NINIIQGSL   97 (204)
T ss_pred             hcCCCCcEEEEecCC---------------CHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC------CCcEEEeec
Confidence            344667999999999               999999988765 6899999999999999987642      467788887


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      .+.   .    ..++||+|+....     +....+.++.+.+.+  ++++++.++.-+.
T Consensus        98 ~~~---~----~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587        98 FDP---F----KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             cCC---C----CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            651   1    1579999987542     334567778887776  5688887775444

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.07  E-value=2.3e-09  Score=99.20  Aligned_cols=158  Identities=17%  Similarity=0.149  Sum_probs=100.8

Q ss_pred             ccccccccccccccccccCCChhHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhh--hCCCeEEEE
Q 022597           49 NCCVSSAHDEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQI--LGAQRCIEV  126 (294)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~--~~~~~vLEi  126 (294)
                      -+|..-|+||..-.-|...+...-.++  ....+...+-++++...+..  .  ..|-...+...+.+.  .+..+|||+
T Consensus        19 ~~C~~~h~fd~a~~Gy~~ll~~~~~~~--~~~~d~~~~~~ar~~fl~~g--~--y~~l~~~i~~~l~~~l~~~~~~vLDi   92 (272)
T PRK11088         19 WICPQNHQFDCAKEGYVNLLPVQHKRS--KDPGDNKEMMQARRAFLDAG--H--YQPLRDAVANLLAERLDEKATALLDI   92 (272)
T ss_pred             EEcCCCCCCccccCceEEeccccccCC--CCCCcCHHHHHHHHHHHHCC--C--hHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence            466669999998877766664221111  11223334444444432221  1  223333332333322  244689999


Q ss_pred             ccccccccccccccccCCCcHHHHHHHHHCCCC--cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhh
Q 022597          127 GVYTVCVSSYSTSILSLFSGYSSLAIALVLPES--GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  204 (294)
Q Consensus       127 G~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~--~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~  204 (294)
                      |||+               |+.+..++...+..  ..++++|+++++++.|++..      .++++..+|+.+..  +  
T Consensus        93 GcG~---------------G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp--~--  147 (272)
T PRK11088         93 GCGE---------------GYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLP--F--  147 (272)
T ss_pred             CCcC---------------CHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCC--C--
Confidence            9999               99999999877632  47999999999999987653      25788888876532  1  


Q ss_pred             cCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          205 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       205 ~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                        ..++||+|+....+    ..++.+.+.|+|||.+++-
T Consensus       148 --~~~sfD~I~~~~~~----~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        148 --ADQSLDAIIRIYAP----CKAEELARVVKPGGIVITV  180 (272)
T ss_pred             --cCCceeEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence              15789999865433    2356778899999999974

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.07  E-value=3.3e-09  Score=104.31  Aligned_cols=120  Identities=18%  Similarity=0.238  Sum_probs=92.1

Q ss_pred             CCCCHHHHHHHH-HHHh---hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597          101 MQVSPDQAQLLA-MLVQ---ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK  176 (294)
Q Consensus       101 ~~v~~~~~~lL~-~l~~---~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~  176 (294)
                      .++.+.+.+.+. .+..   ..++.+|||+|||+               |..++.++...   .+|+++|.++++++.|+
T Consensus       270 ~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~---------------G~~sl~la~~~---~~V~~vE~~~~av~~a~  331 (431)
T TIGR00479       270 FQVNSGQNEKLVDRALEALELQGEELVVDAYCGV---------------GTFTLPLAKQA---KSVVGIEVVPESVEKAQ  331 (431)
T ss_pred             eecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCc---------------CHHHHHHHHhC---CEEEEEEcCHHHHHHHH
Confidence            455666544333 3333   33557999999999               99999998763   58999999999999999


Q ss_pred             HHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEE
Q 022597          177 KYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       177 ~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ++++.+|+. +++++.+|+.+.++.+...  .++||+|++|++... ..++++.+.+ ++|++++++
T Consensus       332 ~n~~~~~~~-nv~~~~~d~~~~l~~~~~~--~~~~D~vi~dPPr~G~~~~~l~~l~~-l~~~~ivyv  394 (431)
T TIGR00479       332 QNAELNGIA-NVEFLAGTLETVLPKQPWA--GQIPDVLLLDPPRKGCAAEVLRTIIE-LKPERIVYV  394 (431)
T ss_pred             HHHHHhCCC-ceEEEeCCHHHHHHHHHhc--CCCCCEEEECcCCCCCCHHHHHHHHh-cCCCEEEEE
Confidence            999999985 6999999998876553211  357999999998544 6777776654 889988776

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK06922 hypothetical protein; Provisional

Probab=99.06  E-value=2e-09  Score=110.33  Aligned_cols=112  Identities=14%  Similarity=0.199  Sum_probs=87.7

Q ss_pred             HHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEE
Q 022597          112 AMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  191 (294)
Q Consensus       112 ~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~  191 (294)
                      ..+....++.+|||+|||+               |..+..++...| +++++++|+++.+++.|+++....+  .+++++
T Consensus       411 ~~i~d~~~g~rVLDIGCGT---------------G~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I  472 (677)
T PRK06922        411 RIILDYIKGDTIVDVGAGG---------------GVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVI  472 (677)
T ss_pred             HHHhhhcCCCEEEEeCCCC---------------CHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEE
Confidence            3455566788999999999               999988888775 7899999999999999999876655  358889


Q ss_pred             EcchhhhHHHHhhcCCCCceeEEEEcCC----------------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          192 HGLAADSLKALILNGEASSYDFAFVDAE----------------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       192 ~gda~~~l~~l~~~~~~~~fD~vfiD~~----------------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ++|+.+....+    ++++||+|+....                ......+++.+.+.|||||.+++-+.
T Consensus       473 ~gDa~dLp~~f----edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        473 KGDAINLSSSF----EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             EcchHhCcccc----CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            99987632112    2578999986421                13457889999999999999998654

>TIGR03438 probable methyltransferase

Probab=99.06  E-value=4.7e-09  Score=98.89  Aligned_cols=111  Identities=14%  Similarity=0.037  Sum_probs=82.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+||||               |..+..++.+++.+.+++++|+|+++++.|+++++.....-++.++++|+.+.
T Consensus        63 ~~~~iLELGcGt---------------G~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        63 AGCELVELGSGS---------------SRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP  127 (301)
T ss_pred             CCCeEEecCCCc---------------chhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence            446899999999               99999999988656899999999999999999987654334578889999765


Q ss_pred             HHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ++... ....+...++|.+..     ......+|+.+.+.|+|||.++++--
T Consensus       128 ~~~~~-~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       128 LALPP-EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             hhhhc-ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            43221 000113345555432     44567899999999999999987543

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.05  E-value=8.5e-10  Score=100.35  Aligned_cols=108  Identities=15%  Similarity=0.182  Sum_probs=80.7

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      ++.|...+...++.+|||+|||+               |..+..++..   +.+++++|+++++++.|+++..      .
T Consensus        31 a~~l~~~l~~~~~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~   86 (251)
T PRK10258         31 ADALLAMLPQRKFTHVLDAGCGP---------------GWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------A   86 (251)
T ss_pred             HHHHHHhcCccCCCeEEEeeCCC---------------CHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------C
Confidence            33333333334567999999999               9888877652   5799999999999999987643      2


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..++.+|+.+..  +    ..++||+|+....   ..+....+..+.+.|+|||.+++...
T Consensus        87 ~~~~~~d~~~~~--~----~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~  141 (251)
T PRK10258         87 DHYLAGDIESLP--L----ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL  141 (251)
T ss_pred             CCEEEcCcccCc--C----CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            467788876531  1    1468999998643   35678899999999999999998754

>TIGR00452 methyltransferase, putative

Probab=99.05  E-value=1.9e-09  Score=102.49  Aligned_cols=109  Identities=14%  Similarity=0.132  Sum_probs=82.1

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++++|||||||+               |+.+..++...  ..+|+|+|+++.++..++..-+..+...++.+..++..
T Consensus       119 ~~~g~~VLDvGCG~---------------G~~~~~~~~~g--~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie  181 (314)
T TIGR00452       119 PLKGRTILDVGCGS---------------GYHMWRMLGHG--AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIE  181 (314)
T ss_pred             CCCCCEEEEeccCC---------------cHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHH
Confidence            35568999999999               99988887653  25799999999998776544343344457888888775


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          197 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      +...       ..+||.||...-   ..+....++.+.+.|+|||.+++......|
T Consensus       182 ~lp~-------~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g  230 (314)
T TIGR00452       182 QLHE-------LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG  230 (314)
T ss_pred             HCCC-------CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence            5321       358999987642   345678999999999999999998765544

Known examples to date are restricted to the proteobacteria.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.02  E-value=8.5e-09  Score=99.68  Aligned_cols=124  Identities=19%  Similarity=0.153  Sum_probs=92.1

Q ss_pred             CCCCCCCHHHHHHHHHHH-hhhC--CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH
Q 022597           98 GSQMQVSPDQAQLLAMLV-QILG--AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV  174 (294)
Q Consensus        98 ~~~~~v~~~~~~lL~~l~-~~~~--~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~  174 (294)
                      .+..|+.+.+.+.|...+ ....  +.++||++||+               |..++.++...   .+|+++|.++++++.
T Consensus       182 ~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~---------------G~~sl~la~~~---~~v~~vE~~~~ai~~  243 (362)
T PRK05031        182 NSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGN---------------GNFTLALARNF---RRVLATEISKPSVAA  243 (362)
T ss_pred             CCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccc---------------cHHHHHHHhhC---CEEEEEECCHHHHHH
Confidence            345677777665555443 3333  25799999999               99999888764   489999999999999


Q ss_pred             HHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCC----------CCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEEe
Q 022597          175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGE----------ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       175 A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~----------~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |+++++.+|+. +++++.+|+.+.++.+.....          ..+||+||+|++... ..+.++.+.+   +++++++.
T Consensus       244 a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        244 AQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS  319 (362)
T ss_pred             HHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence            99999999986 799999999988776532110          125999999998543 4566566654   67776654

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.01  E-value=2.5e-09  Score=102.76  Aligned_cols=99  Identities=18%  Similarity=0.185  Sum_probs=79.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||||||+               |..++.+++..+ +.+++++|.++++++.|+++...    .+++++.+|+.+.
T Consensus       113 ~~~~VLDLGcGt---------------G~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l  172 (340)
T PLN02490        113 RNLKVVDVGGGT---------------GFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL  172 (340)
T ss_pred             CCCEEEEEecCC---------------cHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC
Confidence            456999999999               999999988775 57999999999999999987642    3578899998653


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .  +    +.++||+|+....   ..+....++.+.+.|+|||.+++-
T Consensus       173 p--~----~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        173 P--F----PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             C--C----CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            1  1    1468999987542   334578899999999999998764

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.01  E-value=5.5e-09  Score=93.26  Aligned_cols=101  Identities=15%  Similarity=0.167  Sum_probs=80.8

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++++|||+|||+               |..+..++..   +.+|+++|+++++++.|++++...+..+++++.++|+.
T Consensus        53 ~~~~~~vLDiGcG~---------------G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~  114 (219)
T TIGR02021        53 PLKGKRVLDAGCGT---------------GLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL  114 (219)
T ss_pred             CCCCCEEEEEeCCC---------------CHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence            34578999999999               9999998864   46999999999999999999998887778999999986


Q ss_pred             hhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEec
Q 022597          197 DSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +.         .++||+|+.-.     +.......+..+.+++++++++.+.+
T Consensus       115 ~~---------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~  158 (219)
T TIGR02021       115 SL---------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP  158 (219)
T ss_pred             hC---------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence            53         36899997531     23345677888888888887777643

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.01  E-value=5.9e-11  Score=92.68  Aligned_cols=96  Identities=18%  Similarity=0.218  Sum_probs=62.9

Q ss_pred             EEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHh
Q 022597          124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  203 (294)
Q Consensus       124 LEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~  203 (294)
                      ||||||+               |..+..++...+ ..+++++|+|+.+++.|++++...+... ......+..+..... 
T Consensus         1 LdiGcG~---------------G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-   62 (99)
T PF08242_consen    1 LDIGCGT---------------GRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD-   62 (99)
T ss_dssp             -EESTTT---------------S-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-
T ss_pred             CEeCccC---------------hHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc-
Confidence            7999999               999999999884 8999999999999999999999877543 344443333332211 


Q ss_pred             hcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEE
Q 022597          204 LNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGII  240 (294)
Q Consensus       204 ~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~i  240 (294)
                         ..++||+|+...-   .++...+++.+.++|+|||++
T Consensus        63 ---~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   63 ---PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ---C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             ---cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence               1259999986532   366789999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.01  E-value=7.4e-09  Score=92.27  Aligned_cols=98  Identities=19%  Similarity=0.221  Sum_probs=76.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..++..   +.+++++|+++++++.|++++...+..+++++..+|...
T Consensus        62 ~~~~~vLDvGcG~---------------G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  123 (230)
T PRK07580         62 LTGLRILDAGCGV---------------GSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES  123 (230)
T ss_pred             CCCCEEEEEeCCC---------------CHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh
Confidence            4567999999999               9999998875   457999999999999999999988887789999988421


Q ss_pred             hHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEE
Q 022597          198 SLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                          .     .++||+|+...     +.......++.+.+++++++++.+
T Consensus       124 ----~-----~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        124 ----L-----LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             ----c-----cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence                1     47899998642     234556777777777665555543

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.01  E-value=3.1e-09  Score=94.47  Aligned_cols=104  Identities=18%  Similarity=0.279  Sum_probs=81.7

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ++..++.++||+|||.               |.-++++|+.   |-.|+++|.|+..++.+++..++.+++  |+....|
T Consensus        26 ~~~~~~g~~LDlgcG~---------------GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~D   85 (192)
T PF03848_consen   26 VPLLKPGKALDLGCGE---------------GRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVAD   85 (192)
T ss_dssp             CTTS-SSEEEEES-TT---------------SHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-B
T ss_pred             HhhcCCCcEEEcCCCC---------------cHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEec
Confidence            4455677999999999               9999999986   689999999999999999999998886  8888888


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+..  +     .+.||+|+..     ...+..+.+++.+...++|||++++...
T Consensus        86 l~~~~--~-----~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~  134 (192)
T PF03848_consen   86 LNDFD--F-----PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF  134 (192)
T ss_dssp             GCCBS--------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             chhcc--c-----cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence            75531  1     4689999863     2356678899999999999999988544

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PTZ00146 fibrillarin; Provisional

Probab=99.00  E-value=3e-09  Score=100.05  Aligned_cols=107  Identities=15%  Similarity=0.107  Sum_probs=79.7

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.+..+|||+|||+               |+.+..++....+.++|+++|+++++.+...+..+.   ..+|.++.+|+
T Consensus       129 ~IkpG~~VLDLGaG~---------------G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~---r~NI~~I~~Da  190 (293)
T PTZ00146        129 PIKPGSKVLYLGAAS---------------GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK---RPNIVPIIEDA  190 (293)
T ss_pred             ccCCCCEEEEeCCcC---------------CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh---cCCCEEEECCc
Confidence            345677999999999               999999999987778999999998866554444432   24688999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ....+ +..  ..+++|+||+|....+ ...+...+...|||||.+++.
T Consensus       191 ~~p~~-y~~--~~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        191 RYPQK-YRM--LVPMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             cChhh-hhc--ccCCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence            64211 100  1357999999986444 344556778899999999993

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.00  E-value=6.8e-09  Score=77.86  Aligned_cols=99  Identities=22%  Similarity=0.352  Sum_probs=78.8

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      +++|+|||+               |..+..++.  ....+++++|.+++..+.+++..+.. ...++++..+|..+....
T Consensus         1 ~ildig~G~---------------G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   62 (107)
T cd02440           1 RVLDLGCGT---------------GALALALAS--GPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPE   62 (107)
T ss_pred             CeEEEcCCc---------------cHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccc
Confidence            489999999               988888877  34689999999999999888644333 345799999998776431


Q ss_pred             HhhcCCCCceeEEEEcCC----ccchHHHHHHHHhcccCCeEEEEe
Q 022597          202 LILNGEASSYDFAFVDAE----KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       202 l~~~~~~~~fD~vfiD~~----~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                           ..++||+|+.+..    ......+++.+.+.|+|||.+++.
T Consensus        63 -----~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          63 -----ADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             -----cCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence                 1478999998865    335688899999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.00  E-value=2.7e-09  Score=96.07  Aligned_cols=101  Identities=16%  Similarity=0.080  Sum_probs=76.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC--------------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------------  184 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl--------------  184 (294)
                      ++.+|||+|||.               |.-++++|..   +..||++|+++..++.+.+   ++|+              
T Consensus        34 ~~~rvLd~GCG~---------------G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~~~~~~   92 (213)
T TIGR03840        34 AGARVFVPLCGK---------------SLDLAWLAEQ---GHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGEFTRYR   92 (213)
T ss_pred             CCCeEEEeCCCc---------------hhHHHHHHhC---CCeEEEEeCCHHHHHHHHH---HcCCCcceeccccceeee
Confidence            456999999999               9999999974   6899999999999997533   3332              


Q ss_pred             CCcEEEEEcchhhhHHHHhhcCCCCceeEEEE-----cCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          185 SHKVKIKHGLAADSLKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfi-----D~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+|+++++|..+.-...     .++||.|+-     +.++.....+++.+.++|+|||++++...
T Consensus        93 ~~~v~~~~~D~~~~~~~~-----~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840        93 AGNIEIFCGDFFALTAAD-----LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             cCceEEEEccCCCCCccc-----CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            246899999997653221     256777753     34466678899999999999998666544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.98  E-value=8.7e-09  Score=91.60  Aligned_cols=103  Identities=20%  Similarity=0.245  Sum_probs=82.8

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++..   +.+++++|+++++++.+++++...+.. ++++..+|+.+.
T Consensus        45 ~~~~vLdlG~G~---------------G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~  105 (224)
T TIGR01983        45 FGLRVLDVGCGG---------------GLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDL  105 (224)
T ss_pred             CCCeEEEECCCC---------------CHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHh
Confidence            366999999999               9998888774   357999999999999999999887664 588888888765


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ....     .++||+|++...   ..+...+++.+.+.|+|||.+++...
T Consensus       106 ~~~~-----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       106 AEKG-----AKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             hcCC-----CCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            4321     368999987632   34567899999999999999988654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.97  E-value=6.6e-09  Score=89.46  Aligned_cols=113  Identities=12%  Similarity=0.048  Sum_probs=84.6

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.+|||+|||+               |..+..++..   +++++++|+|+.+++.+++++..   .++++++++|+
T Consensus        10 ~~~~~~~vLEiG~G~---------------G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~   68 (169)
T smart00650       10 NLRPGDTVLEIGPGK---------------GALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDA   68 (169)
T ss_pred             CCCCcCEEEEECCCc---------------cHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECch
Confidence            344556999999999               9999999876   47999999999999999998864   34799999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHh--cccCCeEEEEecccCCCcccCcc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHGKVADQM  255 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~--lLkpgG~ivid~vl~~g~v~~~~  255 (294)
                      .+....      ..+||.||.+.+-.-..+.+..+.+  .+.++|++++..-...--++.|.
T Consensus        69 ~~~~~~------~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~  124 (169)
T smart00650       69 LKFDLP------KLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPG  124 (169)
T ss_pred             hcCCcc------ccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCC
Confidence            875321      3469999999874444566666654  34588999887655444445554

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.97  E-value=1.4e-08  Score=99.02  Aligned_cols=120  Identities=15%  Similarity=0.210  Sum_probs=94.3

Q ss_pred             CCCCCHHHHHHHHHHHhhh-CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQIL-GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~-~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      .+....+...++....... +..+|||++||+               |..++.++...+ ..+|+++|.|++.++.+++|
T Consensus        37 ~~~~nrdl~~~v~~~~~~~~~~~~vLDl~aGs---------------G~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N  100 (382)
T PRK04338         37 RMELNRDISVLVLRAFGPKLPRESVLDALSAS---------------GIRGIRYALETG-VEKVTLNDINPDAVELIKKN  100 (382)
T ss_pred             cccchhhHHHHHHHHHHhhcCCCEEEECCCcc---------------cHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHH
Confidence            3445555444444444322 335899999999               999999988764 45899999999999999999


Q ss_pred             HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++.+++. .+++..+|+.+.+..      .++||+|++|+. ..-.++++.+...+++||++.+.
T Consensus       101 ~~~N~~~-~~~v~~~Da~~~l~~------~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        101 LELNGLE-NEKVFNKDANALLHE------ERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             HHHhCCC-ceEEEhhhHHHHHhh------cCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence            9999986 478999999776642      257999999986 44567888888889999999985

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.97  E-value=4.2e-09  Score=96.89  Aligned_cols=105  Identities=15%  Similarity=0.139  Sum_probs=88.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-----CcEEEEEeCChHHHHHHHHHHHHhCCCCc--EEE
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-----SGCLVACERDARSLEVAKKYYERAGVSHK--VKI  190 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-----~~~v~~id~~~~~~~~A~~~~~~~gl~~~--v~~  190 (294)
                      ....+|||+++||               |-.++.+....+.     +++|+.+|+||+++.++++..++.++...  +.+
T Consensus        99 ~~~m~~lDvaGGT---------------GDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w  163 (296)
T KOG1540|consen   99 GKGMKVLDVAGGT---------------GDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEW  163 (296)
T ss_pred             CCCCeEEEecCCc---------------chhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEE
Confidence            3446999999999               9999999998864     28999999999999999999988888765  999


Q ss_pred             EEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597          191 KHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.+|+.+..  +    ++.+||...+..+   ..+.+..++.+.+.|||||.+.+=
T Consensus       164 ~~~dAE~Lp--F----dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  164 VEGDAEDLP--F----DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL  213 (296)
T ss_pred             EeCCcccCC--C----CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999997653  2    3689999887765   456788999999999999998863

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.96  E-value=9e-09  Score=102.79  Aligned_cols=125  Identities=22%  Similarity=0.287  Sum_probs=100.9

Q ss_pred             CCCHHHHHHHHHHH--hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLV--QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       102 ~v~~~~~~lL~~l~--~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      .++...+++...++  ...++.+|||++++.               |.-|..++..+...+.|+++|+++..++..++++
T Consensus        94 yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAP---------------GgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl  158 (470)
T PRK11933         94 YIQEASSMLPVAALFADDNAPQRVLDMAAAP---------------GSKTTQIAALMNNQGAIVANEYSASRVKVLHANI  158 (470)
T ss_pred             EEECHHHHHHHHHhccCCCCCCEEEEeCCCc---------------cHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Confidence            34555555555555  556788999999999               9999999999987789999999999999999999


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcc
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLI  234 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lL  234 (294)
                      ++.|+. ++.+...|+....+.+     .+.||.|++|++..                         ...++++.+.++|
T Consensus       159 ~r~G~~-nv~v~~~D~~~~~~~~-----~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L  232 (470)
T PRK11933        159 SRCGVS-NVALTHFDGRVFGAAL-----PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL  232 (470)
T ss_pred             HHcCCC-eEEEEeCchhhhhhhc-----hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            999996 4889999987644333     46799999998721                         0257788888999


Q ss_pred             cCCeEEEEecccC
Q 022597          235 RVGGIIVIDNVLW  247 (294)
Q Consensus       235 kpgG~ivid~vl~  247 (294)
                      ||||+||.....+
T Consensus       233 kpGG~LVYSTCT~  245 (470)
T PRK11933        233 KPGGTLVYSTCTL  245 (470)
T ss_pred             CCCcEEEEECCCC
Confidence            9999999887743

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.96  E-value=1.1e-09  Score=98.67  Aligned_cols=101  Identities=16%  Similarity=0.218  Sum_probs=85.7

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      .+....+.+|.|+|||+               |-+|-.+++..| ++.|+|+|.|++|++.|++..      .+++|..+
T Consensus        25 ~Vp~~~~~~v~DLGCGp---------------GnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~a   82 (257)
T COG4106          25 RVPLERPRRVVDLGCGP---------------GNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEA   82 (257)
T ss_pred             hCCccccceeeecCCCC---------------CHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecc
Confidence            34455677999999999               999999999998 899999999999999887654      25889999


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |..+.-+       +.+.|++|.++.   -++-.+.|..+...|.|||++.+.
T Consensus        83 Dl~~w~p-------~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106          83 DLRTWKP-------EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             cHhhcCC-------CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence            9987643       568999999864   566788999999999999999874

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.96  E-value=5.9e-09  Score=93.42  Aligned_cols=99  Identities=18%  Similarity=0.219  Sum_probs=74.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..+++..++.++|++||+++.           .+. ..++++++|+.+
T Consensus        50 ~~~~~VLDlG~Gt---------------G~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~  102 (209)
T PRK11188         50 KPGMTVVDLGAAP---------------GGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRD  102 (209)
T ss_pred             CCCCEEEEEcccC---------------CHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCC
Confidence            4567999999999               9999999998876789999999981           122 348999999876


Q ss_pred             h--HHHHhhcCCCCceeEEEEcCCc-----c--c-------hHHHHHHHHhcccCCeEEEEe
Q 022597          198 S--LKALILNGEASSYDFAFVDAEK-----R--M-------YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~--l~~l~~~~~~~~fD~vfiD~~~-----~--~-------~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .  ++.+...-..++||+|+.|...     .  +       ....++.+.+.|+|||.+++.
T Consensus       103 ~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        103 ELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             hHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            3  3333222225789999987521     1  1       145788889999999999985

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.95  E-value=6.1e-09  Score=94.11  Aligned_cols=98  Identities=15%  Similarity=0.122  Sum_probs=76.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC--------------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------------  184 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl--------------  184 (294)
                      ++.+|||+|||.               |.-++++|..   +..|+++|+++..++.+.   ++.++              
T Consensus        37 ~~~rvL~~gCG~---------------G~da~~LA~~---G~~V~avD~s~~Ai~~~~---~~~~l~~~~~~~~~~~~~~   95 (218)
T PRK13255         37 AGSRVLVPLCGK---------------SLDMLWLAEQ---GHEVLGVELSELAVEQFF---AENGLTPQTRQSGEFEHYQ   95 (218)
T ss_pred             CCCeEEEeCCCC---------------hHhHHHHHhC---CCeEEEEccCHHHHHHHH---HHcCCCccccccccccccc
Confidence            446999999999               9999999973   689999999999998763   23333              


Q ss_pred             CCcEEEEEcchhhhHHHHhhcCCCCceeEEE-----EcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          185 SHKVKIKHGLAADSLKALILNGEASSYDFAF-----VDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vf-----iD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ..+|++.++|..+..+..     .+.||+|+     +..++.....+++.+.++|+|||++++
T Consensus        96 ~~~v~~~~~D~~~l~~~~-----~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255         96 AGEITIYCGDFFALTAAD-----LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             cCceEEEECcccCCCccc-----CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            357899999998753321     35789987     344566788999999999999986444

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.95  E-value=5.5e-09  Score=103.68  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=82.2

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      +...++.+|||+|||+               |..+..++..   ..+|+++|+++++++.+++.   .+..++++++.+|
T Consensus        33 l~~~~~~~vLDlGcG~---------------G~~~~~la~~---~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d   91 (475)
T PLN02336         33 LPPYEGKSVLELGAGI---------------GRFTGELAKK---AGQVIALDFIESVIKKNESI---NGHYKNVKFMCAD   91 (475)
T ss_pred             cCccCCCEEEEeCCCc---------------CHHHHHHHhh---CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEec
Confidence            3344567999999999               9999999886   36899999999999877652   3344579999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          195 AADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      +.+....+    +.++||+|+....     .....++++.+.+.|+|||++++.+..+.
T Consensus        92 ~~~~~~~~----~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~  146 (475)
T PLN02336         92 VTSPDLNI----SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH  146 (475)
T ss_pred             ccccccCC----CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence            85321111    2478999997643     22357889999999999999999766543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.94  E-value=9.2e-09  Score=93.70  Aligned_cols=102  Identities=23%  Similarity=0.322  Sum_probs=88.8

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      ..+||||||.               |...+.+|...| +..++|||+....+..|.+.+++.|+. ++.++++|+.+.+.
T Consensus        50 pi~lEIGfG~---------------G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~  112 (227)
T COG0220          50 PIVLEIGFGM---------------GEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLD  112 (227)
T ss_pred             cEEEEECCCC---------------CHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHH
Confidence            4799999999               999999999987 678999999999999999999999997 79999999999998


Q ss_pred             HHhhcCCCCceeEEEE---cCC--ccc------hHHHHHHHHhcccCCeEEEE
Q 022597          201 ALILNGEASSYDFAFV---DAE--KRM------YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfi---D~~--~~~------~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+..   +++.|-|++   |+|  +++      +..+++.+.+.|+|||.+.+
T Consensus       113 ~~~~---~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~  162 (227)
T COG0220         113 YLIP---DGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF  162 (227)
T ss_pred             hcCC---CCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence            8864   347777765   555  122      78999999999999999986

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.94  E-value=1.1e-08  Score=85.32  Aligned_cols=105  Identities=22%  Similarity=0.250  Sum_probs=75.9

Q ss_pred             HHHHHHHHHh-hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          107 QAQLLAMLVQ-ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       107 ~~~lL~~l~~-~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      ..+++..+.. ..+.++|||+|||+               |..+..++..   +.+++++|+++.+++.           
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~---------------G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------   59 (161)
T PF13489_consen    9 YADLLERLLPRLKPGKRVLDIGCGT---------------GSFLRALAKR---GFEVTGVDISPQMIEK-----------   59 (161)
T ss_dssp             HHHHHHHHHTCTTTTSEEEEESSTT---------------SHHHHHHHHT---TSEEEEEESSHHHHHH-----------
T ss_pred             HHHHHHHHhcccCCCCEEEEEcCCC---------------CHHHHHHHHh---CCEEEEEECCHHHHhh-----------
Confidence            3455565664 45677999999999               9888888554   4599999999999876           


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .++....-+..+... .     .++||+|+....   ..+...+++.+.++|+|||++++....
T Consensus        60 ~~~~~~~~~~~~~~~-~-----~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~  117 (161)
T PF13489_consen   60 RNVVFDNFDAQDPPF-P-----DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPN  117 (161)
T ss_dssp             TTSEEEEEECHTHHC-H-----SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred             hhhhhhhhhhhhhhc-c-----ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence            122222222222211 1     689999987643   346789999999999999999998875

...

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.93  E-value=1.6e-09  Score=99.83  Aligned_cols=100  Identities=16%  Similarity=0.219  Sum_probs=79.4

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-----cEEEEEcc
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGL  194 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-----~v~~~~gd  194 (294)
                      +++|||+|||+               |..+..+|+.   ++.|+|||.++++++.|++..+.....+     ++.+.+.+
T Consensus        90 g~~ilDvGCGg---------------GLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~  151 (282)
T KOG1270|consen   90 GMKILDVGCGG---------------GLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTD  151 (282)
T ss_pred             CceEEEeccCc---------------cccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcc
Confidence            45899999999               9999999986   5899999999999999999954433333     35566666


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ..+.         .++||.|+.---   ..+.+++++.+.++|+|||.+++..+.
T Consensus       152 ~E~~---------~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin  197 (282)
T KOG1270|consen  152 VEGL---------TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN  197 (282)
T ss_pred             hhhc---------ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence            6543         577999986432   345689999999999999999998874

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.93  E-value=1e-08  Score=89.60  Aligned_cols=103  Identities=15%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      +..+.++++|||+|||+               |..+..++....+.++|+++|+++.+           +. .+++++++
T Consensus        27 ~~~i~~g~~VLDiG~Gt---------------G~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~   79 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAP---------------GGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRG   79 (188)
T ss_pred             hcccCCCCEEEEecCCC---------------CHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEe
Confidence            34445677999999999               99999888877657899999999964           12 35788888


Q ss_pred             chhhh--HHHHhhcCCCCceeEEEEcCCc--------------cchHHHHHHHHhcccCCeEEEEe
Q 022597          194 LAADS--LKALILNGEASSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 da~~~--l~~l~~~~~~~~fD~vfiD~~~--------------~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |+.+.  +..+......++||+|+.++..              ......++.+.+.|+|||.+++.
T Consensus        80 d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        80 DFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             eCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            87542  2222111224689999987521              01257888899999999999985

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.93  E-value=1.3e-08  Score=90.51  Aligned_cols=101  Identities=24%  Similarity=0.362  Sum_probs=84.3

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      .+||||||.               |...+.+|...| +..++|+|+....+..|.+.+.+.++. ++.++++|+...+..
T Consensus        20 l~lEIG~G~---------------G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~   82 (195)
T PF02390_consen   20 LILEIGCGK---------------GEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRR   82 (195)
T ss_dssp             EEEEET-TT---------------SHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHH
T ss_pred             eEEEecCCC---------------CHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhh
Confidence            799999999               999999999987 889999999999999999999999986 699999999998887


Q ss_pred             HhhcCCCCceeEEEEc---CC-c-----c--chHHHHHHHHhcccCCeEEEE
Q 022597          202 LILNGEASSYDFAFVD---AE-K-----R--MYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       202 l~~~~~~~~fD~vfiD---~~-~-----~--~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +..   ++++|.|++.   ++ |     +  -..++++.+.+.|+|||.+.+
T Consensus        83 ~~~---~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~  131 (195)
T PF02390_consen   83 LFP---PGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF  131 (195)
T ss_dssp             HST---TTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred             ccc---CCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence            753   4789999775   43 1     1  157999999999999999865

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.93  E-value=2.9e-09  Score=102.03  Aligned_cols=104  Identities=21%  Similarity=0.196  Sum_probs=87.8

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+.+|+|.-+|-               |+.++.+|..-.  .+|+++|+||..++..++|++.+++.++++.++||+.+.
T Consensus       188 ~GE~V~DmFAGV---------------Gpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev  250 (341)
T COG2520         188 EGETVLDMFAGV---------------GPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV  250 (341)
T ss_pred             CCCEEEEccCCc---------------ccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh
Confidence            366777777776               777777777543  349999999999999999999999999999999999998


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+.+      +.+|.|++..++ ...+++..+..++++||+|.++...
T Consensus       251 ~~~~------~~aDrIim~~p~-~a~~fl~~A~~~~k~~g~iHyy~~~  291 (341)
T COG2520         251 APEL------GVADRIIMGLPK-SAHEFLPLALELLKDGGIIHYYEFV  291 (341)
T ss_pred             hhcc------ccCCEEEeCCCC-cchhhHHHHHHHhhcCcEEEEEecc
Confidence            7754      789999998865 3468889999999999999998874

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.92  E-value=3.8e-08  Score=94.88  Aligned_cols=123  Identities=19%  Similarity=0.134  Sum_probs=90.6

Q ss_pred             CCCCCCHHHHHHHH-HHHhhhC--CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHH
Q 022597           99 SQMQVSPDQAQLLA-MLVQILG--AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVA  175 (294)
Q Consensus        99 ~~~~v~~~~~~lL~-~l~~~~~--~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A  175 (294)
                      +..|+.+.+.+.|. ......+  +.+|||+|||+               |..++.++...   .+|+++|.++++++.|
T Consensus       174 ~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~---------------G~~sl~la~~~---~~v~~vE~~~~av~~a  235 (353)
T TIGR02143       174 SFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGN---------------GNFSLALAQNF---RRVLATEIAKPSVNAA  235 (353)
T ss_pred             CcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccc---------------cHHHHHHHHhC---CEEEEEECCHHHHHHH
Confidence            34567777655444 4444443  35799999999               99999888874   4899999999999999


Q ss_pred             HHHHHHhCCCCcEEEEEcchhhhHHHHhhc-------C-C--CCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEEe
Q 022597          176 KKYYERAGVSHKVKIKHGLAADSLKALILN-------G-E--ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       176 ~~~~~~~gl~~~v~~~~gda~~~l~~l~~~-------~-~--~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +++++.+|+. +++++.+|+.+.++.....       + .  ...||+||+|++... ..+.++.+.+   |++++++.
T Consensus       236 ~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs  310 (353)
T TIGR02143       236 QYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS  310 (353)
T ss_pred             HHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence            9999999986 5999999998877642110       0 0  124899999998444 5566666654   67777764

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.92  E-value=1.9e-08  Score=92.53  Aligned_cols=105  Identities=22%  Similarity=0.386  Sum_probs=83.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC---CCcEEEEEcch
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---SHKVKIKHGLA  195 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl---~~~v~~~~gda  195 (294)
                      ++++||-||.|.               |.....+.+. ++-.+++.||+|++.++.|++++.....   ++|++++.+|+
T Consensus        76 ~p~~VLiiGgG~---------------G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg  139 (246)
T PF01564_consen   76 NPKRVLIIGGGD---------------GGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG  139 (246)
T ss_dssp             ST-EEEEEESTT---------------SHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH
T ss_pred             CcCceEEEcCCC---------------hhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh
Confidence            578999999998               8777777654 4457999999999999999999886432   47899999999


Q ss_pred             hhhHHHHhhcCCCC-ceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEAS-SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~-~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ...++..     .+ +||+|++|...+       .-.++++.+.+.|+|||++++..
T Consensus       140 ~~~l~~~-----~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  140 RKFLKET-----QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             HHHHHTS-----SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhc-----cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            9988765     34 899999997531       24799999999999999998764

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.91  E-value=1.1e-08  Score=95.02  Aligned_cols=122  Identities=19%  Similarity=0.320  Sum_probs=96.8

Q ss_pred             CCHHHHHHHHHHHhhh------CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQIL------GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK  176 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~------~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~  176 (294)
                      -.|++.+++.+.+...      .+..++|+|||+               |..++.++..+| .++++++|.++.++..|.
T Consensus       126 PRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGS---------------GaIslsll~~L~-~~~v~AiD~S~~Ai~La~  189 (328)
T KOG2904|consen  126 PRPETEEWVEAVIDALNNSEHSKHTHILDLGTGS---------------GAISLSLLHGLP-QCTVTAIDVSKAAIKLAK  189 (328)
T ss_pred             cCccHHHHHHHHHHHHhhhhhcccceEEEecCCc---------------cHHHHHHHhcCC-CceEEEEeccHHHHHHHH
Confidence            3678888888776543      345799999999               999999999998 899999999999999999


Q ss_pred             HHHHHhCCCCcEEEEEc----chhhhHHHHhhcCCCCceeEEEEcCC--------------------------c---cch
Q 022597          177 KYYERAGVSHKVKIKHG----LAADSLKALILNGEASSYDFAFVDAE--------------------------K---RMY  223 (294)
Q Consensus       177 ~~~~~~gl~~~v~~~~g----da~~~l~~l~~~~~~~~fD~vfiD~~--------------------------~---~~~  223 (294)
                      +|.+++++.+++.+++-    |..+-.+.+     .+++|+++.+++                          .   ..+
T Consensus       190 eN~qr~~l~g~i~v~~~~me~d~~~~~~l~-----~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~  264 (328)
T KOG2904|consen  190 ENAQRLKLSGRIEVIHNIMESDASDEHPLL-----EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNL  264 (328)
T ss_pred             HHHHHHhhcCceEEEecccccccccccccc-----cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHH
Confidence            99999999999999854    433322222     588999976644                          1   124


Q ss_pred             HHHHHHHHhcccCCeEEEEecc
Q 022597          224 QEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       224 ~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..++..+.++|+|||.+.+.-+
T Consensus       265 ~~~~~~a~R~Lq~gg~~~le~~  286 (328)
T KOG2904|consen  265 VHYWLLATRMLQPGGFEQLELV  286 (328)
T ss_pred             HHHHHhhHhhcccCCeEEEEec
Confidence            5667777899999999998766

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.91  E-value=2.2e-08  Score=92.82  Aligned_cols=106  Identities=16%  Similarity=0.268  Sum_probs=76.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHH----HHHHHHHCCC----CcEEEEEeCChHHHHHHHHHHH----HhC---
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYS----SLAIALVLPE----SGCLVACERDARSLEVAKKYYE----RAG---  183 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~----sl~la~~~~~----~~~v~~id~~~~~~~~A~~~~~----~~g---  183 (294)
                      ++.+|+|+||||               |.-    ++.++...+.    +.+|+|+|+|+++++.|++.+-    ..+   
T Consensus        99 ~~~ri~d~GCgt---------------Gee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~  163 (264)
T smart00138       99 RRVRIWSAGCST---------------GEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPK  163 (264)
T ss_pred             CCEEEEeccccC---------------ChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCH
Confidence            345999999999               964    4444444432    5789999999999999998531    001   


Q ss_pred             -------------------CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeE
Q 022597          184 -------------------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGI  239 (294)
Q Consensus       184 -------------------l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~  239 (294)
                                         +.++|+|..+|..+...      +.++||+|+...     +.+.....++.+.+.|+|||+
T Consensus       164 ~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~  237 (264)
T smart00138      164 ALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGY  237 (264)
T ss_pred             HHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeE
Confidence                               23468888888876321      147899998742     234556899999999999999


Q ss_pred             EEEecc
Q 022597          240 IVIDNV  245 (294)
Q Consensus       240 ivid~v  245 (294)
                      +++-..
T Consensus       238 L~lg~~  243 (264)
T smart00138      238 LFLGHS  243 (264)
T ss_pred             EEEECc
Confidence            998543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.90  E-value=3.1e-08  Score=92.93  Aligned_cols=103  Identities=21%  Similarity=0.317  Sum_probs=87.7

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C-CCcEEEEEcchh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAA  196 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l-~~~v~~~~gda~  196 (294)
                      +++||-||.|.               |..+..+++..+ -.+++.||+|++.++.+++++....  . +.|++++.+|+.
T Consensus        77 pk~VLiiGgGd---------------G~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~  140 (282)
T COG0421          77 PKRVLIIGGGD---------------GGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGV  140 (282)
T ss_pred             CCeEEEECCCc---------------cHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHH
Confidence            36999999999               888888877654 6899999999999999999988643  2 479999999999


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCcc-c------hHHHHHHHHhcccCCeEEEEe
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKR-M------YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~-~------~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++++..     ..+||+|++|...+ .      -.+|++.|.+.|+++|+++..
T Consensus       141 ~~v~~~-----~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         141 EFLRDC-----EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             HHHHhC-----CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            998875     45899999997533 2      489999999999999999986

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.90  E-value=2.6e-08  Score=96.88  Aligned_cols=124  Identities=14%  Similarity=0.175  Sum_probs=97.7

Q ss_pred             CCCCCCCHHHHHHHHH-HHhhhCC---CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH
Q 022597           98 GSQMQVSPDQAQLLAM-LVQILGA---QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE  173 (294)
Q Consensus        98 ~~~~~v~~~~~~lL~~-l~~~~~~---~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~  173 (294)
                      .+.|...+|..-++.. +....+.   -+|||..||+               |.-++.++...+...+|+++|+|++.++
T Consensus        19 NP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGs---------------G~rgir~a~e~~ga~~Vv~nD~n~~Av~   83 (374)
T TIGR00308        19 NPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSAS---------------GIRAIRYAHEIEGVREVFANDINPKAVE   83 (374)
T ss_pred             CchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCch---------------hHHHHHHHhhCCCCCEEEEEeCCHHHHH
Confidence            3455566665444332 2233333   3899999999               9999999887543468999999999999


Q ss_pred             HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          174 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       174 ~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+++|++.+++. ++++.++|+...+...     ..+||+|++|+. ....++++.+.+.+++||++.+.
T Consensus        84 ~i~~N~~~N~~~-~~~v~~~Da~~~l~~~-----~~~fDvIdlDPf-Gs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308        84 SIKNNVEYNSVE-NIEVPNEDAANVLRYR-----NRKFHVIDIDPF-GTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             HHHHHHHHhCCC-cEEEEchhHHHHHHHh-----CCCCCEEEeCCC-CCcHHHHHHHHHhcccCCEEEEE
Confidence            999999999886 5899999998887654     467999999994 44468999999999999999986

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=98.90  E-value=1.1e-08  Score=91.82  Aligned_cols=158  Identities=16%  Similarity=0.208  Sum_probs=90.5

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHH---CCCCcEEEEEeCChHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALV---LPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~---~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      .-.|..--.+..++...+|+.|+|+|+..               |.|.+++|..   +...++|++||++.+...  ++.
T Consensus        15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~---------------GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a   77 (206)
T PF04989_consen   15 IQYPQDMVAYQELIWELKPDLIIETGIAH---------------GGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKA   77 (206)
T ss_dssp             SS-HHHHHHHHHHHHHH--SEEEEE--TT---------------SHHHHHHHHHHHHTT---EEEEEES-GTT----S-G
T ss_pred             hcCHHHHHHHHHHHHHhCCCeEEEEecCC---------------CchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHH
Confidence            34566677788888899999999999999               9999988754   345799999999765432  234


Q ss_pred             HHHhCCCCcEEEEEcchhhhH--HHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecccCCCcccC-
Q 022597          179 YERAGVSHKVKIKHGLAADSL--KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD-  253 (294)
Q Consensus       179 ~~~~gl~~~v~~~~gda~~~l--~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~-  253 (294)
                      ++...+.++|++++||..+.-  .............+|+.|+.  ..+...-|+...+++++|+++|+.|..+...-.. 
T Consensus        78 ~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~  157 (206)
T PF04989_consen   78 IESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESW  157 (206)
T ss_dssp             GGG----TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-
T ss_pred             HhhccccCceEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEecccccccccc
Confidence            455667789999999986532  22211111345679999986  4567788888999999999999988764433222 


Q ss_pred             ---ccc--CCcchHHHHHHHHHhhhCCCeEE
Q 022597          254 ---QMV--NDAKTISIRNFNKNLMEDERVSI  279 (294)
Q Consensus       254 ---~~~--~~~~~~~ir~f~~~l~~~~~~~~  279 (294)
                         +..  .+....++++|   ++++++|++
T Consensus       158 ~~~~~w~~g~~p~~av~~f---L~~~~~f~i  185 (206)
T PF04989_consen  158 FPDRPWGPGNNPKTAVKEF---LAEHPDFEI  185 (206)
T ss_dssp             ------------HHHHHHH---HHTTTTEEE
T ss_pred             ccccchhhhhHHHHHHHHH---HHHCCCcEe
Confidence               111  12233455655   667777654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.89  E-value=2e-08  Score=88.43  Aligned_cols=122  Identities=19%  Similarity=0.346  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhhh-------CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597          105 PDQAQLLAMLVQIL-------GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK  177 (294)
Q Consensus       105 ~~~~~lL~~l~~~~-------~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~  177 (294)
                      ..+.+++.++....       .+.+|||+|||.               |..-..++..- -.+.++++|.+++.++.|+.
T Consensus        46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGN---------------G~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~n  109 (227)
T KOG1271|consen   46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGN---------------GHLLFQLAKEG-FQSKLTGVDYSEKAVELAQN  109 (227)
T ss_pred             cHHHHHHHHHHhhhhhhhhcccccceeeccCCc---------------hHHHHHHHHhc-CCCCccccccCHHHHHHHHH
Confidence            33445555554322       244999999999               98888887753 24669999999999999999


Q ss_pred             HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEE---------EcCC--ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          178 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF---------VDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       178 ~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vf---------iD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ..++.|+++.|+|.+.|..+- ...     .++||+|.         +.+.  .....-|+..+.++|+|||+++|..+.
T Consensus       110 iAe~~~~~n~I~f~q~DI~~~-~~~-----~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN  183 (227)
T KOG1271|consen  110 IAERDGFSNEIRFQQLDITDP-DFL-----SGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN  183 (227)
T ss_pred             HHHhcCCCcceeEEEeeccCC-ccc-----ccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence            999999999999999888653 111     46677764         2222  223356777888999999999999886


Q ss_pred             CC
Q 022597          247 WH  248 (294)
Q Consensus       247 ~~  248 (294)
                      |.
T Consensus       184 ~T  185 (227)
T KOG1271|consen  184 FT  185 (227)
T ss_pred             cc
Confidence            64

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.88  E-value=1.1e-08  Score=91.53  Aligned_cols=99  Identities=20%  Similarity=0.269  Sum_probs=77.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +++.|+|..||.               |+.++.+|+..+ ...|+++|+||..++.++++++.+++.++++++++|+.+.
T Consensus       101 ~~e~VlD~faGI---------------G~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~  164 (200)
T PF02475_consen  101 PGEVVLDMFAGI---------------GPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREF  164 (200)
T ss_dssp             TT-EEEETT-TT---------------TTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-
T ss_pred             cceEEEEccCCc---------------cHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHh
Confidence            456999999999               999999998543 6789999999999999999999999999999999999988


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      ++       .+.+|.|+++.++.. .+|++.+..++++||++-
T Consensus       165 ~~-------~~~~drvim~lp~~~-~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  165 LP-------EGKFDRVIMNLPESS-LEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             ---------TT-EEEEEE--TSSG-GGGHHHHHHHEEEEEEEE
T ss_pred             cC-------ccccCEEEECChHHH-HHHHHHHHHHhcCCcEEE
Confidence            76       378999999886543 478999999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02672 methionine S-methyltransferase

Probab=98.88  E-value=2.6e-08  Score=107.52  Aligned_cols=104  Identities=15%  Similarity=0.128  Sum_probs=82.5

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC--------------
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--------------  185 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~--------------  185 (294)
                      +++|||+|||+               |+.++.++...+ .++|+++|+|+++++.|++|++.++++              
T Consensus       119 ~~~VLDlG~GS---------------G~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l  182 (1082)
T PLN02672        119 DKTVAELGCGN---------------GWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTL  182 (1082)
T ss_pred             CCEEEEEecch---------------HHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccc
Confidence            45899999999               999999999876 579999999999999999999987542              


Q ss_pred             -CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--------------c-----------------------c----ch
Q 022597          186 -HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--------------K-----------------------R----MY  223 (294)
Q Consensus       186 -~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--------------~-----------------------~----~~  223 (294)
                       ++++++++|..+.++..     ..+||+|+.+++              .                       .    .|
T Consensus       183 ~~rV~f~~sDl~~~~~~~-----~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~y  257 (1082)
T PLN02672        183 LDRVEFYESDLLGYCRDN-----NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLI  257 (1082)
T ss_pred             cccEEEEECchhhhcccc-----CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHH
Confidence             57999999997755321     247999987654              0                       0    03


Q ss_pred             HHHHHHHHhcccCCeEEEEec
Q 022597          224 QEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       224 ~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ..+++.+.+.|+|||.+++.-
T Consensus       258 r~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        258 ARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             HHHHHHHHHhccCCCEEEEEE
Confidence            556666778999999998753

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.87  E-value=9.3e-09  Score=91.51  Aligned_cols=143  Identities=16%  Similarity=0.190  Sum_probs=92.9

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      -.++||+|||.               |..|..++...   .+++++|.++..++.|++....  . .+|++.+++..+..
T Consensus        44 y~~alEvGCs~---------------G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~-~~V~~~~~dvp~~~  102 (201)
T PF05401_consen   44 YRRALEVGCSI---------------GVLTERLAPRC---DRLLAVDISPRALARARERLAG--L-PHVEWIQADVPEFW  102 (201)
T ss_dssp             EEEEEEE--TT---------------SHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT--
T ss_pred             cceeEecCCCc---------------cHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--C-CCeEEEECcCCCCC
Confidence            35899999999               99999998874   5899999999999999998864  3 46999999987654


Q ss_pred             HHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchH-HHHHHHHHhh
Q 022597          200 KALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI-SIRNFNKNLM  272 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~-~ir~f~~~l~  272 (294)
                      +       .++||+|++..-      ......+++.+...|+|||.+|+-..-  -......-...... -++-|++.+.
T Consensus       103 P-------~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r--d~~c~~wgh~~ga~tv~~~~~~~~~  173 (201)
T PF05401_consen  103 P-------EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR--DANCRRWGHAAGAETVLEMLQEHLT  173 (201)
T ss_dssp             --------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE---HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred             C-------CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CCcccccCcccchHHHHHHHHHHhh
Confidence            3       689999987632      345667888999999999999985431  10000000011122 3455677777


Q ss_pred             hCCCeEEEEeecCCceEEEE
Q 022597          273 EDERVSISMVPIGDGMTICQ  292 (294)
Q Consensus       273 ~~~~~~~~~lp~gdGl~i~~  292 (294)
                      +-+++++.--..+..-.+++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~  193 (201)
T PF05401_consen  174 EVERVECRGGSPNEDCLLAR  193 (201)
T ss_dssp             EEEEEEEE-SSTTSEEEEEE
T ss_pred             heeEEEEcCCCCCCceEeee
Confidence            77777766555555544443

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PHA03412 putative methyltransferase; Provisional

Probab=98.84  E-value=6.5e-08  Score=88.62  Aligned_cols=118  Identities=13%  Similarity=0.106  Sum_probs=86.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC--CCcEEEEEeCChHHHHHHH
Q 022597           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP--ESGCLVACERDARSLEVAK  176 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~--~~~~v~~id~~~~~~~~A~  176 (294)
                      .+...++..++.+..  ....+.+|||+|||+               |..++.+++..+  +..+|+++|+|+.+++.|+
T Consensus        31 GqFfTP~~iAr~~~i--~~~~~grVLDlG~GS---------------G~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar   93 (241)
T PHA03412         31 GAFFTPIGLARDFTI--DACTSGSVVDLCAGI---------------GGLSFAMVHMMMYAKPREIVCVELNHTYYKLGK   93 (241)
T ss_pred             CccCCCHHHHHHHHH--hccCCCEEEEccChH---------------HHHHHHHHHhcccCCCcEEEEEECCHHHHHHHH
Confidence            344566666665532  233467999999999               999999988653  3579999999999999999


Q ss_pred             HHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----cc----------hHHHHHHHHhcccCCeEEE
Q 022597          177 KYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RM----------YQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       177 ~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----~~----------~~~~~~~~~~lLkpgG~iv  241 (294)
                      +++.      ++.++.+|..+..  +     .++||+|+.+++-     .+          ...+++.+.+++++|+.|+
T Consensus        94 ~n~~------~~~~~~~D~~~~~--~-----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL  160 (241)
T PHA03412         94 RIVP------EATWINADALTTE--F-----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII  160 (241)
T ss_pred             hhcc------CCEEEEcchhccc--c-----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence            8753      4788898886532  1     4689999998761     11          3457778888888888866


Q ss_pred             Eeccc
Q 022597          242 IDNVL  246 (294)
Q Consensus       242 id~vl  246 (294)
                      =.+++
T Consensus       161 P~~~~  165 (241)
T PHA03412        161 PQMSA  165 (241)
T ss_pred             Ccccc
Confidence            56555

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=2.4e-07  Score=81.96  Aligned_cols=105  Identities=16%  Similarity=0.252  Sum_probs=78.5

Q ss_pred             CCCCHHHHHHHHHHHhh---hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQI---LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK  177 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~---~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~  177 (294)
                      ....+..+.-+.+.+..   ..++.|+|+||||               |..++..+..-  ..+|+++|+|+++++.+++
T Consensus        24 Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GT---------------G~La~ga~~lG--a~~V~~vdiD~~a~ei~r~   86 (198)
T COG2263          24 YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGT---------------GILAIGAALLG--ASRVLAVDIDPEALEIARA   86 (198)
T ss_pred             cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCc---------------CHHHHHHHhcC--CcEEEEEecCHHHHHHHHH
Confidence            34455555555555543   3557899999999               98888776643  4799999999999999999


Q ss_pred             HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----cchHHHHHHHHhc
Q 022597          178 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQL  233 (294)
Q Consensus       178 ~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----~~~~~~~~~~~~l  233 (294)
                      |.++  +..++.+..+|..+.         .+.+|.++.+++.     ..=..+++.+++.
T Consensus        87 N~~~--l~g~v~f~~~dv~~~---------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~  136 (198)
T COG2263          87 NAEE--LLGDVEFVVADVSDF---------RGKFDTVIMNPPFGSQRRHADRPFLLKALEI  136 (198)
T ss_pred             HHHh--hCCceEEEEcchhhc---------CCccceEEECCCCccccccCCHHHHHHHHHh
Confidence            9999  445799999999876         6899999999872     2224555555543

>PRK06202 hypothetical protein; Provisional

Probab=98.82  E-value=2.7e-08  Score=89.67  Aligned_cols=113  Identities=15%  Similarity=0.185  Sum_probs=77.2

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC---CCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGV  184 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~---~~~~v~~id~~~~~~~~A~~~~~~~gl  184 (294)
                      .+++...+...++.+|||+|||+               |..+..++...+   ++.+|+++|+++++++.|++.....+ 
T Consensus        49 ~~~~~~~l~~~~~~~iLDlGcG~---------------G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~-  112 (232)
T PRK06202         49 RRLLRPALSADRPLTLLDIGCGG---------------GDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG-  112 (232)
T ss_pred             HHHHHHhcCCCCCcEEEEeccCC---------------CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC-
Confidence            34444444445677999999999               999988886542   34699999999999999988765433 


Q ss_pred             CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                         +++..+++.+. +.     ..++||+|++...     .....++++.+.+.++  |.+++.+...
T Consensus       113 ---~~~~~~~~~~l-~~-----~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        113 ---VTFRQAVSDEL-VA-----EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             ---CeEEEEecccc-cc-----cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence               45555554332 11     1578999987532     2234578888888887  5566665543

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.79  E-value=9.7e-08  Score=83.09  Aligned_cols=110  Identities=21%  Similarity=0.412  Sum_probs=74.4

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--CCCcEEEEEc
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHG  193 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l~~~v~~~~g  193 (294)
                      ...++++|||+|||+               |..++.++... ...+|+..|.++ .++..+.+++.++  ...++++..-
T Consensus        42 ~~~~~~~VLELGaG~---------------Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L  104 (173)
T PF10294_consen   42 ELFRGKRVLELGAGT---------------GLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPL  104 (173)
T ss_dssp             GGTTTSEEEETT-TT---------------SHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE-
T ss_pred             hhcCCceEEEECCcc---------------chhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEE
Confidence            356778999999999               99999999874 368999999999 9999999999987  6678888887


Q ss_pred             chhhhH-HHHhhcCCCCceeEEEE-cC--CccchHHHHHHHHhcccCCeEEEEecc
Q 022597          194 LAADSL-KALILNGEASSYDFAFV-DA--EKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       194 da~~~l-~~l~~~~~~~~fD~vfi-D~--~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +..+.. +...   +..+||+|+. |.  ....+..+++.+..+|+++|.+++..-
T Consensus       105 ~Wg~~~~~~~~---~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  105 DWGDELDSDLL---EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             -TTS-HHHHHH---S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             EecCccccccc---ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence            765533 2222   1468999985 43  367789999999999999988665443

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.78  E-value=1.3e-07  Score=90.21  Aligned_cols=145  Identities=17%  Similarity=0.288  Sum_probs=97.3

Q ss_pred             ccccccccccCCChhHHHHHHhc--------CCChHHHHHHHHHHHcCC-CCC-------CCCC--HHHHHHHHHHHhhh
Q 022597           57 DEKYSNKQVISVTPPLYDYILRN--------VREPEILRQLREETAGMR-GSQ-------MQVS--PDQAQLLAMLVQIL  118 (294)
Q Consensus        57 ~~~~~~~~~~~l~~~l~~Y~~~~--------~~~~~~L~~~~~~~~~~~-~~~-------~~v~--~~~~~lL~~l~~~~  118 (294)
                      .+.|+-.......|++.+|+..+        ...++.+.++-+.-..+. +-.       ....  |.-...+.++...+
T Consensus        23 ~~~~df~~L~~~~p~l~~~v~~~~~g~~~idF~~~~Av~~LnkalL~~~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll  102 (321)
T PRK11727         23 RGRYDFAALIQSHPELKPFVILNPYGEQSIDFANPLAVKALNKALLAHFYGVAHWDIPAGYLCPPIPGRADYIHHLADLL  102 (321)
T ss_pred             CCCCCHHHHHHhChhHHHHhccCCCCCeeeeCCCHHHHHHHHHHHHHHhcCCCcccCCCCCcCCCCCcHHHHHHHHHHHh
Confidence            33455555566788999999763        234667777766543321 111       1111  33455555554442


Q ss_pred             -----------CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh-CCCC
Q 022597          119 -----------GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSH  186 (294)
Q Consensus       119 -----------~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~-gl~~  186 (294)
                                 ...++||||||+               |.....++...+ +.+++++|+|++.++.|+++++.+ ++.+
T Consensus       103 ~~~~~~~~p~~~~~~vLDIGtGa---------------g~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~  166 (321)
T PRK11727        103 AEDNGGVIPRGANVRVLDIGVGA---------------NCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNG  166 (321)
T ss_pred             cccccccCCCCCCceEEEecCCc---------------cHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcC
Confidence                       346999999999               877777777655 789999999999999999999999 8999


Q ss_pred             cEEEEE-cchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          187 KVKIKH-GLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       187 ~v~~~~-gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      +|++++ .+..+....+..  ..++||+|+.+++
T Consensus       167 ~I~~~~~~~~~~i~~~i~~--~~~~fDlivcNPP  198 (321)
T PRK11727        167 AIRLRLQKDSKAIFKGIIH--KNERFDATLCNPP  198 (321)
T ss_pred             cEEEEEccchhhhhhcccc--cCCceEEEEeCCC
Confidence            999975 344444333211  2468999999876

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=4.6e-08  Score=90.72  Aligned_cols=119  Identities=22%  Similarity=0.239  Sum_probs=94.2

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      .++...||.+. +-++..+.++.+|+|-|+|+               |..+.++++++.+.|++++.|.+....+.|++-
T Consensus        86 TQI~Yt~Dia~-I~~~L~i~PGsvV~EsGTGS---------------GSlShaiaraV~ptGhl~tfefH~~Ra~ka~ee  149 (314)
T KOG2915|consen   86 TQILYTPDIAM-ILSMLEIRPGSVVLESGTGS---------------GSLSHAIARAVAPTGHLYTFEFHETRAEKALEE  149 (314)
T ss_pred             ceEEecccHHH-HHHHhcCCCCCEEEecCCCc---------------chHHHHHHHhhCcCcceEEEEecHHHHHHHHHH
Confidence            34556777654 45556788899999999999               999999999999899999999999999999999


Q ss_pred             HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeE
Q 022597          179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI  239 (294)
Q Consensus       179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~  239 (294)
                      +++.|+.+++++.+.|....-....    ...+|.||+|.+.+  ...+..+.+.||.+|.
T Consensus       150 Fr~hgi~~~vt~~hrDVc~~GF~~k----s~~aDaVFLDlPaP--w~AiPha~~~lk~~g~  204 (314)
T KOG2915|consen  150 FREHGIGDNVTVTHRDVCGSGFLIK----SLKADAVFLDLPAP--WEAIPHAAKILKDEGG  204 (314)
T ss_pred             HHHhCCCcceEEEEeecccCCcccc----ccccceEEEcCCCh--hhhhhhhHHHhhhcCc
Confidence            9999999999999999865422111    46899999997532  3344455556776663

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.75  E-value=1.4e-07  Score=82.68  Aligned_cols=121  Identities=15%  Similarity=0.198  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc--------EEEEEeCChHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG--------CLVACERDARSLE  173 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~--------~v~~id~~~~~~~  173 (294)
                      .+.|..+..|..++...++..++|--||+               |...+..+.....-.        +++|+|+++++++
T Consensus        11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGs---------------GtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~   75 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGWRPGDVVLDPFCGS---------------GTILIEAALMGANIPPLNDINELKIIGSDIDPKAVR   75 (179)
T ss_dssp             SS-HHHHHHHHHHTT--TTS-EEETT-TT---------------SHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCCCCEEeecCCCC---------------CHHHHHHHHHhhCcccccccccccEEecCCCHHHHH
Confidence            57888999999999988888999999999               888777666544222        3899999999999


Q ss_pred             HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----------cchHHHHHHHHhcccCCeEEEE
Q 022597          174 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       174 ~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----------~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .|++|++.+|+.+.+.+...|+.+..  +    ..+++|.|+.|++.           .-|.++++.+.+.+++..++++
T Consensus        76 ~a~~N~~~ag~~~~i~~~~~D~~~l~--~----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~  149 (179)
T PF01170_consen   76 GARENLKAAGVEDYIDFIQWDARELP--L----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT  149 (179)
T ss_dssp             HHHHHHHHTT-CGGEEEEE--GGGGG--G----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred             HHHHHHHhcccCCceEEEecchhhcc--c----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence            99999999999999999999998764  1    15799999999872           2377888888899999766665


Q ss_pred             e
Q 022597          243 D  243 (294)
Q Consensus       243 d  243 (294)
                      .
T Consensus       150 ~  150 (179)
T PF01170_consen  150 T  150 (179)
T ss_dssp             E
T ss_pred             E
Confidence            4

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.75  E-value=2.3e-07  Score=89.64  Aligned_cols=127  Identities=20%  Similarity=0.300  Sum_probs=102.1

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      .++...+++.+.++...++.+|||..++.               |.=|..++..+.. ++.|+++|.++..++..+++++
T Consensus       139 ~vQd~sS~l~a~~L~p~pge~VlD~cAAP---------------GGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~  203 (355)
T COG0144         139 YVQDEASQLPALVLDPKPGERVLDLCAAP---------------GGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK  203 (355)
T ss_pred             EEcCHHHHHHHHHcCCCCcCEEEEECCCC---------------CCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHH
Confidence            45566677777788888999999999999               9999999998875 4566999999999999999999


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhccc
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIR  235 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLk  235 (294)
                      +.|+.+ +.+...|+........   ..++||.|++|++..                         -..++++.++++||
T Consensus       204 RlG~~n-v~~~~~d~~~~~~~~~---~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk  279 (355)
T COG0144         204 RLGVRN-VIVVNKDARRLAELLP---GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK  279 (355)
T ss_pred             HcCCCc-eEEEeccccccccccc---ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999986 8888888765433321   123699999997610                         14578888889999


Q ss_pred             CCeEEEEecccC
Q 022597          236 VGGIIVIDNVLW  247 (294)
Q Consensus       236 pgG~ivid~vl~  247 (294)
                      |||.++...+-.
T Consensus       280 ~GG~LVYSTCS~  291 (355)
T COG0144         280 PGGVLVYSTCSL  291 (355)
T ss_pred             CCCEEEEEccCC
Confidence            999999998843

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.74  E-value=4.6e-08  Score=87.74  Aligned_cols=97  Identities=21%  Similarity=0.242  Sum_probs=76.3

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC--CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE-EEEcchhh
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAAD  197 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~--~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~-~~~gda~~  197 (294)
                      ..+|||||||               |..=    .-++  +..+||++|+++.+-++|.+.++++... ++. |+.++..+
T Consensus        78 ~~vLEvgcGt---------------G~Nf----kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~  137 (252)
T KOG4300|consen   78 GDVLEVGCGT---------------GANF----KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGEN  137 (252)
T ss_pred             cceEEecccC---------------CCCc----ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhc
Confidence            3689999999               7432    2233  5899999999999999999999988554 466 88888865


Q ss_pred             hHHHHhhcCCCCceeEEEEc---CCccchHHHHHHHHhcccCCeEEEE
Q 022597          198 SLKALILNGEASSYDFAFVD---AEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD---~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                       ++++.    +++||.|+.-   ...++..+.+..+.++|||||.+++
T Consensus       138 -l~~l~----d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif  180 (252)
T KOG4300|consen  138 -LPQLA----DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF  180 (252)
T ss_pred             -Ccccc----cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence             44442    6899998543   4467788899999999999999986

>PRK05785 hypothetical protein; Provisional

Probab=98.71  E-value=1e-07  Score=86.28  Aligned_cols=88  Identities=13%  Similarity=0.078  Sum_probs=68.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+||||               |..+..++...  +++|+++|+++++++.|++.         ...+++|+.+.
T Consensus        51 ~~~~VLDlGcGt---------------G~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l  104 (226)
T PRK05785         51 RPKKVLDVAAGK---------------GELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL  104 (226)
T ss_pred             CCCeEEEEcCCC---------------CHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC
Confidence            356999999999               99999988865  47999999999999998763         13457777643


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCe
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGG  238 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG  238 (294)
                       + +    .+++||.|++...   ..+....++.+.+.|||.+
T Consensus       105 -p-~----~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        105 -P-F----RDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             -C-C----CCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence             2 1    2689999987543   4567889999999999954

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.70  E-value=3.7e-08  Score=89.75  Aligned_cols=111  Identities=21%  Similarity=0.310  Sum_probs=85.9

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCC-CCcEEEEEc
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV-SHKVKIKHG  193 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl-~~~v~~~~g  193 (294)
                      ...++.+|||.++|-               ||.++..++.   ++ +|+++|.||..++.|+-|--..++ +.++++++|
T Consensus       131 ~~~~G~rVLDtC~GL---------------GYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilG  192 (287)
T COG2521         131 KVKRGERVLDTCTGL---------------GYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILG  192 (287)
T ss_pred             ccccCCEeeeeccCc---------------cHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecc
Confidence            344678999999999               9999887764   45 999999999999888765333233 235899999


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCc-----c-chHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEK-----R-MYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~-----~-~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      |+.+.++.+.    +++||+|+.|++.     + .-.++++.+.+.|+|||.++ |-+--+|
T Consensus       193 D~~e~V~~~~----D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlF-HYvG~Pg  249 (287)
T COG2521         193 DAYEVVKDFD----DESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLF-HYVGNPG  249 (287)
T ss_pred             cHHHHHhcCC----ccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEE-EEeCCCC
Confidence            9999998873    6789999999872     2 24688899999999999874 5553333

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.70  E-value=1.7e-07  Score=81.61  Aligned_cols=126  Identities=21%  Similarity=0.144  Sum_probs=103.2

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK  177 (294)
Q Consensus        98 ~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~  177 (294)
                      |+....++-.++.|+..+....+..|||+|.||               |..|-++++..-+...++++|.|++......+
T Consensus        27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGT---------------GV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~   91 (194)
T COG3963          27 GAILPSSSILARKMASVIDPESGLPVLELGPGT---------------GVITKAILSRGVRPESLTAIEYSPDFVCHLNQ   91 (194)
T ss_pred             eeecCCcHHHHHHHHhccCcccCCeeEEEcCCc---------------cHhHHHHHhcCCCccceEEEEeCHHHHHHHHH
Confidence            566778889999999999999999999999999               99999999887667899999999999988777


Q ss_pred             HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          178 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       178 ~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.      .++++.||+.+.-..+.+. ....||.|+...+     .....++++.++..|++||.++--..
T Consensus        92 ~~p------~~~ii~gda~~l~~~l~e~-~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY  157 (194)
T COG3963          92 LYP------GVNIINGDAFDLRTTLGEH-KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY  157 (194)
T ss_pred             hCC------CccccccchhhHHHHHhhc-CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            653      4679999998754334322 2568999997755     34467899999999999999987555

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.70  E-value=9.2e-07  Score=82.94  Aligned_cols=153  Identities=20%  Similarity=0.270  Sum_probs=114.4

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.....++...++...++.+|||.+++.               |.=+..++..+...+.++++|++++.+...++++++
T Consensus        68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAap---------------GgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r  132 (283)
T PF01189_consen   68 YVQDESSQLVALALDPQPGERVLDMCAAP---------------GGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR  132 (283)
T ss_dssp             EEHHHHHHHHHHHHTTTTTSEEEESSCTT---------------SHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred             EecccccccccccccccccccccccccCC---------------CCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh
Confidence            44555566667777788888999999999               999999999998789999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcc--
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLI--  234 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lL--  234 (294)
                      .|... +.+...|+....+...    ...||.|++|++..                         ...+.++.+.+++  
T Consensus       133 ~g~~~-v~~~~~D~~~~~~~~~----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~  207 (283)
T PF01189_consen  133 LGVFN-VIVINADARKLDPKKP----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNI  207 (283)
T ss_dssp             TT-SS-EEEEESHHHHHHHHHH----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHH
T ss_pred             cCCce-EEEEeecccccccccc----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcc
Confidence            99874 7777788887655442    34699999997610                         1356788888999  


Q ss_pred             --cCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecC
Q 022597          235 --RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIG  285 (294)
Q Consensus       235 --kpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~g  285 (294)
                        +|||.+|....-..-        ......++.|.+   ++|.++..-.+..
T Consensus       208 ~~k~gG~lvYsTCS~~~--------eENE~vV~~fl~---~~~~~~l~~~~~~  249 (283)
T PF01189_consen  208 DFKPGGRLVYSTCSLSP--------EENEEVVEKFLK---RHPDFELVPIPLP  249 (283)
T ss_dssp             HBEEEEEEEEEESHHHG--------GGTHHHHHHHHH---HSTSEEEECCESS
T ss_pred             cccCCCeEEEEeccHHH--------HHHHHHHHHHHH---hCCCcEEEecccc
Confidence              999999988773211        122335566644   5666665544443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.69  E-value=3.9e-08  Score=85.30  Aligned_cols=78  Identities=22%  Similarity=0.251  Sum_probs=58.2

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      .|+|..||.               |.-++.+|+..   .+|++||+|+..++.|+.|++-.|+.++|++++||+.+.++.
T Consensus         2 ~vlD~fcG~---------------GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~   63 (163)
T PF09445_consen    2 TVLDAFCGV---------------GGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR   63 (163)
T ss_dssp             EEEETT-TT---------------SHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG
T ss_pred             EEEEeccCc---------------CHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh
Confidence            689999988               99999999974   589999999999999999999999999999999999987665


Q ss_pred             HhhcCCCCceeEEEEcCCc
Q 022597          202 LILNGEASSYDFAFVDAEK  220 (294)
Q Consensus       202 l~~~~~~~~fD~vfiD~~~  220 (294)
                      +..   ...+|+||+++++
T Consensus        64 ~~~---~~~~D~vFlSPPW   79 (163)
T PF09445_consen   64 LKS---NKIFDVVFLSPPW   79 (163)
T ss_dssp             B---------SEEEE---B
T ss_pred             ccc---cccccEEEECCCC
Confidence            421   1128999999874

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.69  E-value=1.4e-07  Score=88.97  Aligned_cols=112  Identities=17%  Similarity=0.233  Sum_probs=82.8

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      +..+.+++|||||||.               ||-+..++..-  ...|+|+|.++...-+.+-.-+-.|...++... ..
T Consensus       111 l~~L~gk~VLDIGC~n---------------GY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-pl  172 (315)
T PF08003_consen  111 LPDLKGKRVLDIGCNN---------------GYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PL  172 (315)
T ss_pred             hCCcCCCEEEEecCCC---------------cHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Cc
Confidence            3456889999999999               99999998864  368999999999877655544445554434443 22


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      ..+.++.      .+.||.||.-+-   .++....+..+...|++||.+|++.....|.
T Consensus       173 gvE~Lp~------~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~  225 (315)
T PF08003_consen  173 GVEDLPN------LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD  225 (315)
T ss_pred             chhhccc------cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence            3333332      378999997543   4567788999999999999999998877664

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.69  E-value=2.8e-07  Score=87.80  Aligned_cols=96  Identities=15%  Similarity=0.099  Sum_probs=70.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC----CCcEEEEEcc
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKHGL  194 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl----~~~v~~~~gd  194 (294)
                      ++.+|||+|||+               |..++.++..   +.+|+++|+++++++.|+++++..+.    ..++++..+|
T Consensus       144 ~~~~VLDlGcGt---------------G~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D  205 (315)
T PLN02585        144 AGVTVCDAGCGT---------------GSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND  205 (315)
T ss_pred             CCCEEEEecCCC---------------CHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence            467999999999               9999998874   57999999999999999999887532    2357888888


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEE
Q 022597          195 AADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ..+.         .++||+|+.-     .+.......++.+.. +.+||+++.
T Consensus       206 l~~l---------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        206 LESL---------SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             hhhc---------CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence            6432         4789998743     222233455555554 467777664

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.66  E-value=3.8e-07  Score=90.37  Aligned_cols=123  Identities=21%  Similarity=0.234  Sum_probs=96.8

Q ss_pred             CCCCCCCHHHHHHHHHHH----hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH
Q 022597           98 GSQMQVSPDQAQLLAMLV----QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE  173 (294)
Q Consensus        98 ~~~~~v~~~~~~lL~~l~----~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~  173 (294)
                      .+..|+.+.+++-|...+    +..+..+++|+-||.               |..++.+|..   ..+|+|+|+++++++
T Consensus       268 ~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGv---------------G~f~l~lA~~---~~~V~gvEi~~~aV~  329 (432)
T COG2265         268 RSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGV---------------GTFGLPLAKR---VKKVHGVEISPEAVE  329 (432)
T ss_pred             CCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCC---------------Chhhhhhccc---CCEEEEEecCHHHHH
Confidence            366788888877666654    334557999999999               9999999854   479999999999999


Q ss_pred             HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchH-HHHHHHHhcccCCeEEEEe
Q 022597          174 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       174 ~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~-~~~~~~~~lLkpgG~ivid  243 (294)
                      .|+++++.+|+.+ ++|..+++.+..+...   ....+|.|++|++..... ++++.+ ..++|-.++.+.
T Consensus       330 ~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~---~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS  395 (432)
T COG2265         330 AAQENAAANGIDN-VEFIAGDAEEFTPAWW---EGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS  395 (432)
T ss_pred             HHHHHHHHcCCCc-EEEEeCCHHHHhhhcc---ccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence            9999999999987 9999999999887653   135789999999976665 555554 445666666553

>PHA03411 putative methyltransferase; Provisional

Probab=98.62  E-value=2.5e-07  Score=86.48  Aligned_cols=98  Identities=10%  Similarity=0.062  Sum_probs=73.4

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      .....+|||+|||+               |..++.++...+ +.+|+++|+++++++.+++++      .+++++.+|+.
T Consensus        62 ~~~~grVLDLGcGs---------------Gilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~  119 (279)
T PHA03411         62 AHCTGKVLDLCAGI---------------GRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVF  119 (279)
T ss_pred             cccCCeEEEcCCCC---------------CHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchh
Confidence            33456999999999               999888877653 479999999999999998864      25889999997


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCc-----c------ch------------HHHHHHHHhcccCCeEEEEe
Q 022597          197 DSLKALILNGEASSYDFAFVDAEK-----R------MY------------QEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~-----~------~~------------~~~~~~~~~lLkpgG~ivid  243 (294)
                      +...       ..+||+|+.+++-     .      .|            .+++.....+|+|+|.+.+-
T Consensus       120 e~~~-------~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        120 EFES-------NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             hhcc-------cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence            6531       4689999998651     1      12            34455556789999876553

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.62  E-value=5.1e-07  Score=85.19  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=75.8

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ..+++.....+...+...++.+|||||||+               |..+..++..   ..+|+++|+|+++++.++++++
T Consensus        18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~---------------G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~   79 (294)
T PTZ00338         18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGT---------------GNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQ   79 (294)
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEecCch---------------HHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHH
Confidence            456666666666666666778999999999               9999998875   4689999999999999999998


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      ..+..++++++++|+.+..        ..+||.|+.+.+
T Consensus        80 ~~~~~~~v~ii~~Dal~~~--------~~~~d~VvaNlP  110 (294)
T PTZ00338         80 NSPLASKLEVIEGDALKTE--------FPYFDVCVANVP  110 (294)
T ss_pred             hcCCCCcEEEEECCHhhhc--------ccccCEEEecCC
Confidence            8876678999999997631        246899998865

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.62  E-value=2.9e-07  Score=83.33  Aligned_cols=124  Identities=17%  Similarity=0.215  Sum_probs=88.1

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      -.++|...+++.. .....+.+||..|||.               |+-.++++..   +.+|+|+|+++..++.+.+...
T Consensus        20 ~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~---------------g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~   80 (218)
T PF05724_consen   20 GEPNPALVEYLDS-LALKPGGRVLVPGCGK---------------GYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENN   80 (218)
T ss_dssp             TTSTHHHHHHHHH-HTTSTSEEEEETTTTT---------------SCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCT
T ss_pred             CCCCHHHHHHHHh-cCCCCCCeEEEeCCCC---------------hHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhc
Confidence            3567777776666 3445566999999999               9999999985   5799999999999887743211


Q ss_pred             H-h------C----CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEec
Q 022597          181 R-A------G----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       181 ~-~------g----l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      . .      +    -..+|++.+||..+.-+..     .++||+|+-.+     ++....+|.+.+.++|+|||.+++-.
T Consensus        81 ~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~-----~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~  155 (218)
T PF05724_consen   81 LEPTVTSVGGFKRYQAGRITIYCGDFFELPPED-----VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT  155 (218)
T ss_dssp             TEEECTTCTTEEEETTSSEEEEES-TTTGGGSC-----HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             cCCCcccccceeeecCCceEEEEcccccCChhh-----cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            1 0      0    1246899999998754321     35899997542     36778999999999999999965544


Q ss_pred             ccCC
Q 022597          245 VLWH  248 (294)
Q Consensus       245 vl~~  248 (294)
                      +.+.
T Consensus       156 l~~~  159 (218)
T PF05724_consen  156 LEYP  159 (218)
T ss_dssp             EES-
T ss_pred             EEcC
Confidence            4433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.61  E-value=3.4e-07  Score=80.94  Aligned_cols=96  Identities=20%  Similarity=0.366  Sum_probs=81.5

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      +++|||+|.               |.-++-++...| +.+++.+|.+..-+...+...+..|++ +++++++.+.+  +.
T Consensus        51 ~~lDiGSGa---------------GfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~  111 (184)
T PF02527_consen   51 KVLDIGSGA---------------GFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE  111 (184)
T ss_dssp             EEEEETSTT---------------TTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT
T ss_pred             eEEecCCCC---------------CChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc
Confidence            799999999               999999999987 889999999999999999999999997 59999999987  11


Q ss_pred             HhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          202 LILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       202 l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                           ...+||+|+.-+- .....+++.+.+++++||.+++
T Consensus       112 -----~~~~fd~v~aRAv-~~l~~l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  112 -----YRESFDVVTARAV-APLDKLLELARPLLKPGGRLLA  146 (184)
T ss_dssp             -----TTT-EEEEEEESS-SSHHHHHHHHGGGEEEEEEEEE
T ss_pred             -----cCCCccEEEeehh-cCHHHHHHHHHHhcCCCCEEEE
Confidence                 1689999998874 3567899999999999999874

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.57  E-value=3.9e-07  Score=82.46  Aligned_cols=106  Identities=18%  Similarity=0.226  Sum_probs=82.5

Q ss_pred             HHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE
Q 022597          110 LLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  189 (294)
Q Consensus       110 lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~  189 (294)
                      .+.......+.++|+|||.|+               |..+..+++..| +.+++.+|+ |+.++.+++       .++|+
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~---------------G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~  146 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGS---------------GHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVE  146 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TT---------------SHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEE
T ss_pred             hhhccccccCccEEEeccCcc---------------hHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccc
Confidence            334444555667999999999               999999999998 889999999 888888887       67999


Q ss_pred             EEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCC--eEEEEecccCC
Q 022597          190 IKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVG--GIIVIDNVLWH  248 (294)
Q Consensus       190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpg--G~ivid~vl~~  248 (294)
                      ++.||..+.+        .. +|++++-.     +.+.-..+++.+.+.|+||  |.|++.+.+.+
T Consensus       147 ~~~gd~f~~~--------P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~  203 (241)
T PF00891_consen  147 FVPGDFFDPL--------PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP  203 (241)
T ss_dssp             EEES-TTTCC--------SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred             cccccHHhhh--------cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence            9999997542        34 99998742     3556788999999999999  99888877543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.55  E-value=4.2e-07  Score=90.42  Aligned_cols=103  Identities=16%  Similarity=0.206  Sum_probs=79.1

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHC---CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      .+.|+|||||+               |-.+...+++.   ....+|++||.|+.+....++.++.+|+.++|+++++|.+
T Consensus       187 ~~vVldVGAGr---------------GpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r  251 (448)
T PF05185_consen  187 DKVVLDVGAGR---------------GPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMR  251 (448)
T ss_dssp             T-EEEEES-TT---------------SHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TT
T ss_pred             ceEEEEeCCCc---------------cHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCccc
Confidence            46799999999               99887776654   2246999999999998888888899999999999999998


Q ss_pred             hhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEec
Q 022597          197 DSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ++-.       ..+.|+|+.-.     ..+..++.+....+.|+|||+++=..
T Consensus       252 ~v~l-------pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~  297 (448)
T PF05185_consen  252 EVEL-------PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSS  297 (448)
T ss_dssp             TSCH-------SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSE
T ss_pred             CCCC-------CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcc
Confidence            8632       46899998542     23456788888889999999987543

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.54  E-value=9.9e-07  Score=81.32  Aligned_cols=92  Identities=14%  Similarity=0.091  Sum_probs=74.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      ....+++...+.+...+...++++|||||||+               |..+..++..   ..+|+++|+++++++.++++
T Consensus         9 Qnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~---------------G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~   70 (258)
T PRK14896          9 QHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGK---------------GALTDELAKR---AKKVYAIELDPRLAEFLRDD   70 (258)
T ss_pred             ccccCCHHHHHHHHHhcCCCCcCeEEEEeCcc---------------CHHHHHHHHh---CCEEEEEECCHHHHHHHHHH
Confidence            34567777777777777777788999999999               9999999986   36899999999999999988


Q ss_pred             HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      ++.   .++++++++|+.+..        ...||.|+.+.+
T Consensus        71 ~~~---~~~v~ii~~D~~~~~--------~~~~d~Vv~NlP  100 (258)
T PRK14896         71 EIA---AGNVEIIEGDALKVD--------LPEFNKVVSNLP  100 (258)
T ss_pred             hcc---CCCEEEEEeccccCC--------chhceEEEEcCC
Confidence            864   357999999997641        245899988765

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.53  E-value=5.3e-07  Score=86.46  Aligned_cols=118  Identities=21%  Similarity=0.235  Sum_probs=95.4

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      -.+.|..++.+..|++..+++.+||=-|||               |...+...  +- +++++|+|++.++++-|+.|++
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGT---------------GgiLiEag--l~-G~~viG~Did~~mv~gak~Nl~  240 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGT---------------GGILIEAG--LM-GARVIGSDIDERMVRGAKINLE  240 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCc---------------cHHHHhhh--hc-CceEeecchHHHHHhhhhhhhh
Confidence            468999999999999999999999999988               65544443  33 7899999999999999999999


Q ss_pred             HhCCCCcEEEEEc-chhhhHHHHhhcCCCCceeEEEEcCC-------c-----cchHHHHHHHHhcccCCeEEEEe
Q 022597          181 RAGVSHKVKIKHG-LAADSLKALILNGEASSYDFAFVDAE-------K-----RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       181 ~~gl~~~v~~~~g-da~~~l~~l~~~~~~~~fD~vfiD~~-------~-----~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..|+.+ ..+... |+... + +.    ..++|.|..|++       +     +-|.++|+.+.+.|++||++++-
T Consensus       241 ~y~i~~-~~~~~~~Da~~l-p-l~----~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         241 YYGIED-YPVLKVLDATNL-P-LR----DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             hhCcCc-eeEEEecccccC-C-CC----CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence            999875 555555 88654 2 31    346999999987       1     22889999999999999988863

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.49  E-value=2.1e-06  Score=78.27  Aligned_cols=125  Identities=9%  Similarity=0.029  Sum_probs=88.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      .....|-..+.+..+.. .++.+||..|||.               |.-..+++..   +.+|+|+|+++..++.+.+  
T Consensus        25 ~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGk---------------g~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~--   83 (226)
T PRK13256         25 QESPNEFLVKHFSKLNI-NDSSVCLIPMCGC---------------SIDMLFFLSK---GVKVIGIELSEKAVLSFFS--   83 (226)
T ss_pred             cCCCCHHHHHHHHhcCC-CCCCeEEEeCCCC---------------hHHHHHHHhC---CCcEEEEecCHHHHHHHHH--
Confidence            34455554444444321 2446999999999               9999999985   6789999999999987754  


Q ss_pred             HHhCC--------------CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEE
Q 022597          180 ERAGV--------------SHKVKIKHGLAADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGII  240 (294)
Q Consensus       180 ~~~gl--------------~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~i  240 (294)
                       ++++              ..++++.++|..+.-..-   ...++||+|+--     -+.....+|.+.+.++|+|||.+
T Consensus        84 -e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~---~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~l  159 (226)
T PRK13256         84 -QNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA---NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQI  159 (226)
T ss_pred             -HcCCCcceecccccceeccCceEEEEccCcCCCccc---cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEE
Confidence             2211              236999999998752100   013679998543     34677899999999999999998


Q ss_pred             EEecccCCC
Q 022597          241 VIDNVLWHG  249 (294)
Q Consensus       241 vid~vl~~g  249 (294)
                      ++-..-..+
T Consensus       160 lll~~~~~~  168 (226)
T PRK13256        160 LLLVMEHDK  168 (226)
T ss_pred             EEEEEecCC
Confidence            886654444

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.48  E-value=4.2e-07  Score=83.26  Aligned_cols=111  Identities=18%  Similarity=0.337  Sum_probs=79.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC-----C---------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-----V---------  184 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g-----l---------  184 (294)
                      .++.+|||||-+               |..++.||+... .-.|.|||+|+..++.|+++++..-     +         
T Consensus        58 ~~~~~LDIGCNs---------------G~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~  121 (288)
T KOG2899|consen   58 EPKQALDIGCNS---------------GFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFG  121 (288)
T ss_pred             CcceeEeccCCc---------------chhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccc
Confidence            455799999999               999999999986 4569999999999999999887421     0         


Q ss_pred             --------------------CCcEEEEEcch----hhhHHHHhhcCCCCceeEEEE-------c--CCccchHHHHHHHH
Q 022597          185 --------------------SHKVKIKHGLA----ADSLKALILNGEASSYDFAFV-------D--AEKRMYQEYFELLL  231 (294)
Q Consensus       185 --------------------~~~v~~~~gda----~~~l~~l~~~~~~~~fD~vfi-------D--~~~~~~~~~~~~~~  231 (294)
                                          .+++.+...+.    .|.+ .+    ....||+|+.       +  .+.+....+|..+.
T Consensus       122 ~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis  196 (288)
T KOG2899|consen  122 VQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DM----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKIS  196 (288)
T ss_pred             cccccccccccccccccccCCcchhcccccEEEecchhh-hh----ccccccEEEEEEeeeeEecccccHHHHHHHHHHH
Confidence                                01111211111    1222 11    2578999963       2  33456899999999


Q ss_pred             hcccCCeEEEEecccCCCc
Q 022597          232 QLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       232 ~lLkpgG~ivid~vl~~g~  250 (294)
                      ++|.|||++|+.-=-|...
T Consensus       197 ~ll~pgGiLvvEPQpWksY  215 (288)
T KOG2899|consen  197 SLLHPGGILVVEPQPWKSY  215 (288)
T ss_pred             HhhCcCcEEEEcCCchHHH
Confidence            9999999999886666543

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=2.8e-06  Score=74.89  Aligned_cols=102  Identities=15%  Similarity=0.250  Sum_probs=82.6

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      ++-|+|||||+               |+.+-.+++.+.++....++|+||+.++..++-++.++..  ++.+..|..+.+
T Consensus        44 ~~i~lEIG~GS---------------GvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l  106 (209)
T KOG3191|consen   44 PEICLEIGCGS---------------GVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGL  106 (209)
T ss_pred             ceeEEEecCCc---------------chHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhh
Confidence            55799999999               9999999999988888999999999999999999988763  788888887766


Q ss_pred             HHHhhcCCCCceeEEEEcCC------------------------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          200 KALILNGEASSYDFAFVDAE------------------------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~------------------------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .       .++.|+++.+++                        .+-...++..+-.+|.|.|++.+--+
T Consensus       107 ~-------~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~  169 (209)
T KOG3191|consen  107 R-------NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL  169 (209)
T ss_pred             c-------cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence            5       478999876643                        01145666667788999999987554

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1e-06  Score=79.23  Aligned_cols=112  Identities=22%  Similarity=0.292  Sum_probs=84.6

Q ss_pred             HHHHHHHHh-hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCC-
Q 022597          108 AQLLAMLVQ-ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGV-  184 (294)
Q Consensus       108 ~~lL~~l~~-~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl-  184 (294)
                      +.++..|-. ..++-+.||+|+|+               ||.+.++++.+.. +...++||.-++.++.++++++..-- 
T Consensus        70 a~~le~L~~~L~pG~s~LdvGsGS---------------GYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~  134 (237)
T KOG1661|consen   70 ATALEYLDDHLQPGASFLDVGSGS---------------GYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITT  134 (237)
T ss_pred             HHHHHHHHHhhccCcceeecCCCc---------------cHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccC
Confidence            445555442 45667999999999               9999999976654 44459999999999999999986431 


Q ss_pred             --------CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          185 --------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       185 --------~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                              ..++.++.||.+...+.      ..+||.|++.+...   +..+.+...|++||.|++-
T Consensus       135 ~e~~~~~~~~~l~ivvGDgr~g~~e------~a~YDaIhvGAaa~---~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  135 SESSSKLKRGELSIVVGDGRKGYAE------QAPYDAIHVGAAAS---ELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             chhhhhhccCceEEEeCCccccCCc------cCCcceEEEccCcc---ccHHHHHHhhccCCeEEEe
Confidence                    24678889998765433      58999999987643   4445677788999988875

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.44  E-value=7.9e-07  Score=85.04  Aligned_cols=103  Identities=21%  Similarity=0.305  Sum_probs=81.3

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.+.+.|||+||||               |..++.-|++.  ..+|+++|-+.-. +.|++.++.+++++.|++++|...
T Consensus        58 lf~dK~VlDVGcGt---------------GILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvE  119 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGT---------------GILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVE  119 (346)
T ss_pred             hcCCCEEEEcCCCc---------------cHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceE
Confidence            56788999999999               99999988875  5799999998765 999999999999999999999998


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHH--------hcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL--------QLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~--------~lLkpgG~ivid~v  245 (294)
                      +.  .+.    .++.|.|+..  +-.|--+++.++        +.|+|||.++=+-.
T Consensus       120 di--~LP----~eKVDiIvSE--WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a  168 (346)
T KOG1499|consen  120 DI--ELP----VEKVDIIVSE--WMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRA  168 (346)
T ss_pred             EE--ecC----ccceeEEeeh--hhhHHHHHhhhhhhhhhhhhhccCCCceEccccc
Confidence            86  331    4789988753  233333333332        68999999876544

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.42  E-value=1.3e-06  Score=82.52  Aligned_cols=83  Identities=22%  Similarity=0.175  Sum_probs=69.5

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++..+||.+||.               |.-+..++..+++.++|+|+|.|+++++.|++.++.   .+++++++++..+
T Consensus        18 ~pg~~vlD~TlG~---------------GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~   79 (296)
T PRK00050         18 KPDGIYVDGTFGG---------------GGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSN   79 (296)
T ss_pred             CCCCEEEEeCcCC---------------hHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHH
Confidence            3556999999999               999999999987789999999999999999998865   4689999999998


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCc
Q 022597          198 SLKALILNGEASSYDFAFVDAEK  220 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~  220 (294)
                      ....+.. + ..++|.|+.|.+.
T Consensus        80 l~~~l~~-~-~~~vDgIl~DLGv  100 (296)
T PRK00050         80 LKEVLAE-G-LGKVDGILLDLGV  100 (296)
T ss_pred             HHHHHHc-C-CCccCEEEECCCc
Confidence            7655532 1 2389999998764

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.42  E-value=8.4e-07  Score=77.93  Aligned_cols=89  Identities=17%  Similarity=0.191  Sum_probs=63.1

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...  +..++++|+++++++.+++        .+++++.+|+.+.
T Consensus        13 ~~~~iLDiGcG~---------------G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~   67 (194)
T TIGR02081        13 PGSRVLDLGCGD---------------GELLALLRDEK--QVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEG   67 (194)
T ss_pred             CCCEEEEeCCCC---------------CHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhc
Confidence            456999999999               99888887653  4678999999999888754        1367888888653


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccC
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRV  236 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkp  236 (294)
                      +..+    ..++||+|+....   ..+....++.+.+.+++
T Consensus        68 l~~~----~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        68 LEAF----PDKSFDYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             cccc----CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            3222    1478999998643   23455666666665553

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.41  E-value=3.3e-06  Score=77.49  Aligned_cols=103  Identities=15%  Similarity=0.124  Sum_probs=74.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      ...+++...+-+...+...++.+|||||||+               |..+..++...   ..|+++|.|+++++.+++++
T Consensus        10 ~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~---------------G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~   71 (253)
T TIGR00755        10 NFLIDESVIQKIVEAANVLEGDVVLEIGPGL---------------GALTEPLLKRA---KKVTAIEIDPRLAEILRKLL   71 (253)
T ss_pred             ccCCCHHHHHHHHHhcCCCCcCEEEEeCCCC---------------CHHHHHHHHhC---CcEEEEECCHHHHHHHHHHh
Confidence            3456777666666656666778999999999               99999999875   36999999999999998877


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee---EEEEcCCccchHHHHHHHH
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYD---FAFVDAEKRMYQEYFELLL  231 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD---~vfiD~~~~~~~~~~~~~~  231 (294)
                      ..   ..+++++++|+.+...        .++|   .|+.+.+..-....+..+.
T Consensus        72 ~~---~~~v~v~~~D~~~~~~--------~~~d~~~~vvsNlPy~i~~~il~~ll  115 (253)
T TIGR00755        72 SL---YERLEVIEGDALKVDL--------PDFPKQLKVVSNLPYNISSPLIFKLL  115 (253)
T ss_pred             Cc---CCcEEEEECchhcCCh--------hHcCCcceEEEcCChhhHHHHHHHHh
Confidence            43   4579999999976422        2355   7777765333344444444

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK00536 speE spermidine synthase; Provisional

Probab=98.39  E-value=4e-06  Score=78.05  Aligned_cols=98  Identities=10%  Similarity=0.095  Sum_probs=75.6

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--CC-CCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--gl-~~~v~~~~gd  194 (294)
                      .+|++||=||.|-               |.....+++. +  .+|+.||+|++.++.+++++...  ++ +.|++++.. 
T Consensus        71 ~~pk~VLIiGGGD---------------Gg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-  131 (262)
T PRK00536         71 KELKEVLIVDGFD---------------LELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-  131 (262)
T ss_pred             CCCCeEEEEcCCc---------------hHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-
Confidence            4678999999999               8777777775 3  49999999999999999976642  22 467888751 


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                          ..+.    ..++||+|++|...  -.++++.+.+.|+|||+++...
T Consensus       132 ----~~~~----~~~~fDVIIvDs~~--~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        132 ----LLDL----DIKKYDLIICLQEP--DIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             ----hhhc----cCCcCCEEEEcCCC--ChHHHHHHHHhcCCCcEEEECC
Confidence                1111    13789999999542  3688899999999999999753

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.39  E-value=3.3e-06  Score=85.28  Aligned_cols=103  Identities=16%  Similarity=0.168  Sum_probs=83.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ....+||||||.               |-..+.+|...| +..++|+|+....+..+.+..++.|+. ++.++.+|+...
T Consensus       347 ~~p~~lEIG~G~---------------G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~  409 (506)
T PRK01544        347 KRKVFLEIGFGM---------------GEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLI  409 (506)
T ss_pred             CCceEEEECCCc---------------hHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHH
Confidence            456899999999               999999999987 788999999999999998888888886 588988887544


Q ss_pred             HHHHhhcCCCCceeEEEE---cCCc--cc------hHHHHHHHHhcccCCeEEEE
Q 022597          199 LKALILNGEASSYDFAFV---DAEK--RM------YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfi---D~~~--~~------~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ...+    ..+++|.|++   |+|+  ++      .+++++.+.+.|+|||.+-+
T Consensus       410 ~~~~----~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~  460 (506)
T PRK01544        410 LNDL----PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF  460 (506)
T ss_pred             HHhc----CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence            4433    2467888876   4551  11      68999999999999998875

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.38  E-value=4.8e-06  Score=77.43  Aligned_cols=103  Identities=11%  Similarity=0.018  Sum_probs=75.0

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ..+++...+.+...+...++.+|||||||+               |..+..++...   .+|+++|+|+++++.+++++.
T Consensus        24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~---------------G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~   85 (272)
T PRK00274         24 FLIDENILDKIVDAAGPQPGDNVLEIGPGL---------------GALTEPLLERA---AKVTAVEIDRDLAPILAETFA   85 (272)
T ss_pred             cCCCHHHHHHHHHhcCCCCcCeEEEeCCCc---------------cHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhc
Confidence            456777666666666667778999999999               99999999874   489999999999999998764


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHH
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL  231 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~  231 (294)
                      .    .+++++++|+.+.-..      .-.+|.|+.+.+-.-...++..+.
T Consensus        86 ~----~~v~~i~~D~~~~~~~------~~~~~~vv~NlPY~iss~ii~~~l  126 (272)
T PRK00274         86 E----DNLTIIEGDALKVDLS------ELQPLKVVANLPYNITTPLLFHLL  126 (272)
T ss_pred             c----CceEEEEChhhcCCHH------HcCcceEEEeCCccchHHHHHHHH
Confidence            2    5799999999765211      111578887765333344444444

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.35  E-value=1.7e-06  Score=78.20  Aligned_cols=98  Identities=23%  Similarity=0.406  Sum_probs=83.4

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      +++++|||+|.               |.-++-+|...| +.+||-+|...+.+...++..++.|+. +++++++.+.+.-
T Consensus        68 ~~~~~DIGSGa---------------GfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~  130 (215)
T COG0357          68 AKRVLDIGSGA---------------GFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFG  130 (215)
T ss_pred             CCEEEEeCCCC---------------CCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcc
Confidence            57999999999               999999998777 666999999999999999999999997 5999999998764


Q ss_pred             HHHhhcCCCCc-eeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          200 KALILNGEASS-YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       200 ~~l~~~~~~~~-fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +.       .. ||+|..-+- .....+++.+.+++++||.+++
T Consensus       131 ~~-------~~~~D~vtsRAv-a~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         131 QE-------KKQYDVVTSRAV-ASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             cc-------cccCcEEEeehc-cchHHHHHHHHHhcccCCcchh
Confidence            32       23 999987763 3467889999999999998753

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.33  E-value=2.6e-06  Score=75.67  Aligned_cols=127  Identities=17%  Similarity=0.241  Sum_probs=84.0

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||.               |..-.++...  .+.+.+|+|++++.+..+.+        ..+.++++|..+-
T Consensus        13 pgsrVLDLGCGd---------------G~LL~~L~~~--k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~g   67 (193)
T PF07021_consen   13 PGSRVLDLGCGD---------------GELLAYLKDE--KQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEG   67 (193)
T ss_pred             CCCEEEecCCCc---------------hHHHHHHHHh--cCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHh
Confidence            567999999999               8777666664  37899999999998654432        2467999999888


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC--eEEEEecc---------cCCCccc--C--c--cc--CCc
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG--GIIVIDNV---------LWHGKVA--D--Q--MV--NDA  259 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg--G~ivid~v---------l~~g~v~--~--~--~~--~~~  259 (294)
                      +..+.    +++||.|++.-.-.....--+.+.++||-|  +++.+.|.         ++.|++-  +  |  .+  ++.
T Consensus        68 L~~f~----d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNi  143 (193)
T PF07021_consen   68 LADFP----DQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNI  143 (193)
T ss_pred             HhhCC----CCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCc
Confidence            77663    789999998754322222222234445555  56666665         3567642  1  1  11  233


Q ss_pred             chHHHHHHHHHhhhC
Q 022597          260 KTISIRNFNKNLMED  274 (294)
Q Consensus       260 ~~~~ir~f~~~l~~~  274 (294)
                      +-..+++|.+...+.
T Consensus       144 h~~Ti~DFe~lc~~~  158 (193)
T PF07021_consen  144 HLCTIKDFEDLCREL  158 (193)
T ss_pred             ccccHHHHHHHHHHC
Confidence            445889998776554

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.32  E-value=3e-06  Score=79.31  Aligned_cols=106  Identities=19%  Similarity=0.235  Sum_probs=71.8

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH-HhCCCCcEEEEEcchhhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~-~~gl~~~v~~~~gda~~~  198 (294)
                      +++|+=||||.-              -.+++.++.....+.+++++|++++..+.+++.++ ..|+..+++|+.+|..+.
T Consensus       121 p~rVaFIGSGPL--------------PlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~  186 (276)
T PF03059_consen  121 PSRVAFIGSGPL--------------PLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDV  186 (276)
T ss_dssp             --EEEEE---SS---------------HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG
T ss_pred             cceEEEEcCCCc--------------chHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcc
Confidence            359999999852              66778888765557899999999999999999998 678899999999999776


Q ss_pred             HHHHhhcCCCCceeEEEEcCCcc----chHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAEKR----MYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~----~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ...+      ..||.||+-+-..    .-.+.++.+.+.++||+.+++-..
T Consensus       187 ~~dl------~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa  231 (276)
T PF03059_consen  187 TYDL------KEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA  231 (276)
T ss_dssp             -GG----------SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred             cccc------ccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence            4333      6899999876543    778999999999999999998643

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.28  E-value=5.3e-06  Score=80.09  Aligned_cols=115  Identities=23%  Similarity=0.254  Sum_probs=73.5

Q ss_pred             CCCCCCCHHHHHHHHHHH-hhhCC--CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH
Q 022597           98 GSQMQVSPDQAQLLAMLV-QILGA--QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV  174 (294)
Q Consensus        98 ~~~~~v~~~~~~lL~~l~-~~~~~--~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~  174 (294)
                      ++..|+.+.+.+-|...+ ...+.  ..+||+-||+               |..|+.+|...   .+|+|||.++++++.
T Consensus       172 ~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~---------------G~fsl~la~~~---~~V~gvE~~~~av~~  233 (352)
T PF05958_consen  172 GSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGV---------------GTFSLPLAKKA---KKVIGVEIVEEAVED  233 (352)
T ss_dssp             TS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TT---------------TCCHHHHHCCS---SEEEEEES-HHHHHH
T ss_pred             CcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecC---------------CHHHHHHHhhC---CeEEEeeCCHHHHHH
Confidence            566788888765555544 43332  3799999999               99999998764   689999999999999


Q ss_pred             HHHHHHHhCCCCcEEEEEcchhhhHHHHhhc----------CCCCceeEEEEcCCccch-HHHHHHHH
Q 022597          175 AKKYYERAGVSHKVKIKHGLAADSLKALILN----------GEASSYDFAFVDAEKRMY-QEYFELLL  231 (294)
Q Consensus       175 A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~----------~~~~~fD~vfiD~~~~~~-~~~~~~~~  231 (294)
                      |+++++.+|+. +++++.+++.+....+...          .....+|.|++|++.... ....+.+.
T Consensus       234 A~~Na~~N~i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~  300 (352)
T PF05958_consen  234 ARENAKLNGID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK  300 (352)
T ss_dssp             HHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred             HHHHHHHcCCC-cceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence            99999999996 5999999887654433110          012368999999985443 34455443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.25  E-value=9.2e-06  Score=72.91  Aligned_cols=117  Identities=16%  Similarity=0.172  Sum_probs=84.2

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      +||||||||               |--+.+++..+| ..+-...|.+++...-.+.++...|+.+-..-+.-|+.+-.-.
T Consensus        28 ~vLEiaSGt---------------GqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~   91 (204)
T PF06080_consen   28 RVLEIASGT---------------GQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWP   91 (204)
T ss_pred             eEEEEcCCc---------------cHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCc
Confidence            599999999               999999999998 6788899999999888899999888764222233333221000


Q ss_pred             Hh--hcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEEeccc-CCCcccCc
Q 022597          202 LI--LNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVL-WHGKVADQ  254 (294)
Q Consensus       202 l~--~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivid~vl-~~g~v~~~  254 (294)
                      ..  .....++||.||.-     .++.....+|+.+.++|++||.+++-.-+ .+|+...+
T Consensus        92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~  152 (204)
T PF06080_consen   92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE  152 (204)
T ss_pred             cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc
Confidence            00  00124689999853     34667789999999999999999987654 44554433

The function of this family is unknown.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.22  E-value=2.6e-05  Score=73.36  Aligned_cols=123  Identities=19%  Similarity=0.274  Sum_probs=96.4

Q ss_pred             HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      +-+..|.+...+-+||||.||.               |---+-+....+. ..++...|.++..++..++.+++.|+.+.
T Consensus       125 ~ai~~L~~~g~pvrIlDIAaG~---------------GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i  189 (311)
T PF12147_consen  125 QAIARLREQGRPVRILDIAAGH---------------GRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDI  189 (311)
T ss_pred             HHHHHHHhcCCceEEEEeccCC---------------cHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccc
Confidence            3333444445677999999999               9888888777774 36899999999999999999999999998


Q ss_pred             EEEEEcchhhh--HHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecccCCCcc
Q 022597          188 VKIKHGLAADS--LKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV  251 (294)
Q Consensus       188 v~~~~gda~~~--l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v  251 (294)
                      ++|.++|+.+.  +..+     ...++++++.+-      -....+-+.-+...+.|||++|..+-=||-.+
T Consensus       190 ~~f~~~dAfd~~~l~~l-----~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl  256 (311)
T PF12147_consen  190 ARFEQGDAFDRDSLAAL-----DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL  256 (311)
T ss_pred             eEEEecCCCCHhHhhcc-----CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence            89999999875  3333     456788887643      22245567778899999999999998888664

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.22  E-value=4.4e-06  Score=75.69  Aligned_cols=100  Identities=21%  Similarity=0.251  Sum_probs=79.9

Q ss_pred             CCCCHH-HHHHHHHHH-hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597          101 MQVSPD-QAQLLAMLV-QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus       101 ~~v~~~-~~~lL~~l~-~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      ..++|+ .+..++..+ ....+..|+|.-||.               |..++.++...   ..|++||+||..+..|+.|
T Consensus        74 fsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~---------------gGntiqfa~~~---~~VisIdiDPikIa~AkhN  135 (263)
T KOG2730|consen   74 FSVTPEKIAEHIANRVVACMNAEVIVDAFCGV---------------GGNTIQFALQG---PYVIAIDIDPVKIACARHN  135 (263)
T ss_pred             EEeccHHHHHHHHHHHHHhcCcchhhhhhhcC---------------CchHHHHHHhC---CeEEEEeccHHHHHHHhcc
Confidence            356665 355555544 334778999999988               88888888764   5899999999999999999


Q ss_pred             HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc
Q 022597          179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK  220 (294)
Q Consensus       179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~  220 (294)
                      ++-.|+.++|+|++||..+..+.+...  ...+|+||..+++
T Consensus       136 aeiYGI~~rItFI~GD~ld~~~~lq~~--K~~~~~vf~sppw  175 (263)
T KOG2730|consen  136 AEVYGVPDRITFICGDFLDLASKLKAD--KIKYDCVFLSPPW  175 (263)
T ss_pred             ceeecCCceeEEEechHHHHHHHHhhh--hheeeeeecCCCC
Confidence            999999999999999999988776432  3568999988764

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.20  E-value=3.7e-06  Score=72.04  Aligned_cols=77  Identities=12%  Similarity=0.091  Sum_probs=60.4

Q ss_pred             EEEeCChHHHHHHHHHHHHh--CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCC
Q 022597          163 VACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVG  237 (294)
Q Consensus       163 ~~id~~~~~~~~A~~~~~~~--gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpg  237 (294)
                      +|+|+|+++++.|++..+..  +...+++++++|+.+. +.     ..++||+|++...   ..+..+.++.+.+.||||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~-----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG   74 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF-----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG   74 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC-----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence            58999999999998776532  3345799999999764 21     2578999987643   356789999999999999


Q ss_pred             eEEEEecc
Q 022597          238 GIIVIDNV  245 (294)
Q Consensus       238 G~ivid~v  245 (294)
                      |.+++.+.
T Consensus        75 G~l~i~d~   82 (160)
T PLN02232         75 SRVSILDF   82 (160)
T ss_pred             eEEEEEEC
Confidence            99988766

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.19  E-value=2.3e-06  Score=78.42  Aligned_cols=105  Identities=20%  Similarity=0.218  Sum_probs=77.1

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      +|||||||.               |-...-+.+..+. +-+|++||.+|..++..+++.....  .++.-..-|...  +
T Consensus        74 ~ilEvGCGv---------------GNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~--~  134 (264)
T KOG2361|consen   74 TILEVGCGV---------------GNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTS--P  134 (264)
T ss_pred             hheeeccCC---------------CcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccc--h
Confidence            799999999               9999999988763 3789999999999998887765432  334433333321  1


Q ss_pred             HHhhcCCCCceeEEE-----EcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          201 ALILNGEASSYDFAF-----VDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       201 ~l~~~~~~~~fD~vf-----iD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+...-+.+++|+|.     .-..++..+..++.+.++|||||.+++-|.
T Consensus       135 ~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDY  184 (264)
T KOG2361|consen  135 SLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDY  184 (264)
T ss_pred             hccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence            222222468899763     233467788999999999999999999887

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.19  E-value=4.6e-06  Score=75.42  Aligned_cols=113  Identities=19%  Similarity=0.208  Sum_probs=78.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +..++||.|+|.               |-.|-.++...  -.+|..+|..+++++.|++++... .....++.+....+.
T Consensus        55 ~~~~alDcGAGI---------------GRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f  116 (218)
T PF05891_consen   55 KFNRALDCGAGI---------------GRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDF  116 (218)
T ss_dssp             --SEEEEET-TT---------------THHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-
T ss_pred             CcceEEeccccc---------------chhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhc
Confidence            346999999999               99988776543  468999999999999999877652 123456777667666


Q ss_pred             HHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEE-ecccCCCc-ccCcc
Q 022597          199 LKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVI-DNVLWHGK-VADQM  255 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivi-d~vl~~g~-v~~~~  255 (294)
                      .+.      .++||+|.+.     -...+..+||+.|...|+|||+|++ +|+--.|. +.|+.
T Consensus       117 ~P~------~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~  174 (218)
T PF05891_consen  117 TPE------EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEE  174 (218)
T ss_dssp             ---------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETT
T ss_pred             cCC------CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCc
Confidence            553      4799999875     3356789999999999999999999 66666665 44443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK10742 putative methyltransferase; Provisional

Probab=98.15  E-value=1.3e-05  Score=73.92  Aligned_cols=89  Identities=16%  Similarity=0.247  Sum_probs=72.5

Q ss_pred             HHHHHHHHhhhCCC--eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh---
Q 022597          108 AQLLAMLVQILGAQ--RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---  182 (294)
Q Consensus       108 ~~lL~~l~~~~~~~--~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~---  182 (294)
                      ++.|...+.+.++.  +|||.-+|+               |.-++.++..   +++|+++|.++......+++++++   
T Consensus        75 ~~~l~kAvglk~g~~p~VLD~TAGl---------------G~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~  136 (250)
T PRK10742         75 GEAVAKAVGIKGDYLPDVVDATAGL---------------GRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYAD  136 (250)
T ss_pred             ccHHHHHhCCCCCCCCEEEECCCCc---------------cHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhc
Confidence            45666666666665  889988888               8887777764   678999999999999999999986   


Q ss_pred             ---C--CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          183 ---G--VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       183 ---g--l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                         +  +..+++++++|+.++++..     ..+||+||+|+.
T Consensus       137 ~~~~~~~~~ri~l~~~da~~~L~~~-----~~~fDVVYlDPM  173 (250)
T PRK10742        137 AEIGGWLQERLQLIHASSLTALTDI-----TPRPQVVYLDPM  173 (250)
T ss_pred             cccchhhhceEEEEeCcHHHHHhhC-----CCCCcEEEECCC
Confidence               3  2367999999999998764     458999999986

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=1.1e-05  Score=68.95  Aligned_cols=110  Identities=19%  Similarity=0.284  Sum_probs=79.1

Q ss_pred             CCCCCHHH-HHHHHHHHhh---hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHH
Q 022597          100 QMQVSPDQ-AQLLAMLVQI---LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVA  175 (294)
Q Consensus       100 ~~~v~~~~-~~lL~~l~~~---~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A  175 (294)
                      +...+|+. +.++.++-..   ..++.++|+|||+               |..+  ++-..+....|+|+|++|+.++.+
T Consensus        25 QY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgc---------------GmLs--~a~sm~~~e~vlGfDIdpeALEIf   87 (185)
T KOG3420|consen   25 QYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGC---------------GMLS--IAFSMPKNESVLGFDIDPEALEIF   87 (185)
T ss_pred             hCCCcHHHHHHHHHHHHhhhccccCcchhhhcCch---------------hhhH--HHhhcCCCceEEeeecCHHHHHHH
Confidence            34456664 4455554433   3578999999988               8776  556667678899999999999999


Q ss_pred             HHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcc
Q 022597          176 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLI  234 (294)
Q Consensus       176 ~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lL  234 (294)
                      ++|.++..++  +.+.+.|..+....      .+.||.++++++     +..-.++++..+++.
T Consensus        88 ~rNaeEfEvq--idlLqcdildle~~------~g~fDtaviNppFGTk~~~aDm~fv~~al~~~  143 (185)
T KOG3420|consen   88 TRNAEEFEVQ--IDLLQCDILDLELK------GGIFDTAVINPPFGTKKKGADMEFVSAALKVA  143 (185)
T ss_pred             hhchHHhhhh--hheeeeeccchhcc------CCeEeeEEecCCCCcccccccHHHHHHHHHHH
Confidence            9999998775  68999988775443      488999999986     122234555555443

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.14  E-value=1.3e-05  Score=76.97  Aligned_cols=107  Identities=10%  Similarity=0.116  Sum_probs=70.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC---------CCCcEE
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---------VSHKVK  189 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g---------l~~~v~  189 (294)
                      ++.+|||+|||-|              |-..-|....   -..++|+|++++.++.|+++++...         ..-...
T Consensus        62 ~~~~VLDl~CGkG--------------GDL~Kw~~~~---i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~  124 (331)
T PF03291_consen   62 PGLTVLDLCCGKG--------------GDLQKWQKAK---IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAE  124 (331)
T ss_dssp             TT-EEEEET-TTT--------------TTHHHHHHTT----SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEE
T ss_pred             CCCeEEEecCCCc--------------hhHHHHHhcC---CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhh
Confidence            5569999999984              5566665543   3699999999999999999994321         122467


Q ss_pred             EEEcchhhh-HHHHhhcCCCCceeEEEEcC-------CccchHHHHHHHHhcccCCeEEEEe
Q 022597          190 IKHGLAADS-LKALILNGEASSYDFAFVDA-------EKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       190 ~~~gda~~~-l~~l~~~~~~~~fD~vfiD~-------~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++.+|.... +...... ...+||+|=+-.       .......+++.+...|+|||+++..
T Consensus       125 f~~~D~f~~~l~~~~~~-~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  125 FIAADCFSESLREKLPP-RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             EEESTTCCSHHHCTSSS-TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eeccccccchhhhhccc-cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            788877542 2211111 135999994432       2445678999999999999999864

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.13  E-value=3.4e-05  Score=74.64  Aligned_cols=105  Identities=20%  Similarity=0.311  Sum_probs=82.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH--HHHhC----CCCcEEEEE
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERAG----VSHKVKIKH  192 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~--~~~~g----l~~~v~~~~  192 (294)
                      ++++||-+|.|-               |.....+.+ .|.-.+++-+|+||++++.++++  ++..+    .+.|++++.
T Consensus       289 ~a~~vLvlGGGD---------------GLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~  352 (508)
T COG4262         289 GARSVLVLGGGD---------------GLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN  352 (508)
T ss_pred             ccceEEEEcCCc---------------hHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe
Confidence            567999999999               866666655 45568999999999999999944  33322    246899999


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccc--------hHHHHHHHHhcccCCeEEEEec
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~--------~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .|+..+++.-     .+.||+|++|-+.++        -.+++..+.+.|+++|.+|+..
T Consensus       353 dDAf~wlr~a-----~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         353 DDAFQWLRTA-----ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             ccHHHHHHhh-----cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence            9999998875     579999999865322        3578888889999999999854

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.12  E-value=4.3e-06  Score=76.62  Aligned_cols=98  Identities=18%  Similarity=0.170  Sum_probs=65.6

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      .++|+|||+               |-.+..++...   .+|+++|+++.|+++|++.....-..-..++-..+..    .
T Consensus        36 ~a~DvG~G~---------------Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v----~   93 (261)
T KOG3010|consen   36 LAWDVGTGN---------------GQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMV----D   93 (261)
T ss_pred             eEEEeccCC---------------CcchHHHHHhh---hhheeecCCHHHHHHhhcCCCcccccCCccccccccc----c
Confidence            789999999               97777777764   5899999999999988875542111111111111111    1


Q ss_pred             HhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCe-EEEEe
Q 022597          202 LILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGG-IIVID  243 (294)
Q Consensus       202 l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG-~ivid  243 (294)
                      |  .|.+++.|+|.+--.  +=+..++++.+.+.||+.| ++.+=
T Consensus        94 L--~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen   94 L--LGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             c--cCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEE
Confidence            1  233689999975421  4457889999999999877 77653

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.10  E-value=7.9e-06  Score=74.61  Aligned_cols=144  Identities=17%  Similarity=0.211  Sum_probs=90.1

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      -+++||+||||               |..+-.+-...   .+++++|+|..|++.|.+.    |+-+  ++.++++...+
T Consensus       126 F~~~lDLGCGT---------------GL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl  181 (287)
T COG4976         126 FRRMLDLGCGT---------------GLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFL  181 (287)
T ss_pred             cceeeecccCc---------------CcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHh
Confidence            46999999999               98887766543   5899999999999887652    3322  34455555444


Q ss_pred             HHHhhcCCCCceeEEEE-cC--CccchHHHHHHHHhcccCCeEEEEeccc---CCCcccCcccCCcchHHHHHHHHHhhh
Q 022597          200 KALILNGEASSYDFAFV-DA--EKRMYQEYFELLLQLIRVGGIIVIDNVL---WHGKVADQMVNDAKTISIRNFNKNLME  273 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfi-D~--~~~~~~~~~~~~~~lLkpgG~ivid~vl---~~g~v~~~~~~~~~~~~ir~f~~~l~~  273 (294)
                      +..    +.++||+|.. |.  .-.....+|-.+..+|+|||.+.+..=-   |.|-+..|...-.+   -+.+.+.+.+
T Consensus       182 ~~~----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH---~~~YVr~~l~  254 (287)
T COG4976         182 EDL----TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAH---SESYVRALLA  254 (287)
T ss_pred             hhc----cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhcc---chHHHHHHHH
Confidence            432    3689999864 22  2344567788888999999999985322   22223333322111   1233444444


Q ss_pred             CCCeEEEE-----------eecCCceEEEEEC
Q 022597          274 DERVSISM-----------VPIGDGMTICQKR  294 (294)
Q Consensus       274 ~~~~~~~~-----------lp~gdGl~i~~k~  294 (294)
                      ..++++.-           -|+..++-|++|+
T Consensus       255 ~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~  286 (287)
T COG4976         255 ASGLEVIAIEDTTIRRDAGEPVPGILVIARKK  286 (287)
T ss_pred             hcCceEEEeecccchhhcCCCCCCceEEEecC
Confidence            44444322           4777888888875

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.06  E-value=1.7e-05  Score=77.45  Aligned_cols=104  Identities=16%  Similarity=0.240  Sum_probs=82.0

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-cEEEEEcchhhhH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSL  199 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-~v~~~~gda~~~l  199 (294)
                      -+|||.=+|+               |.=++..+..++...+|++-|+|++.++.+++|++.+++.+ ++++.+.|+...+
T Consensus        51 ~~~lDalaas---------------GvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll  115 (377)
T PF02005_consen   51 IRVLDALAAS---------------GVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL  115 (377)
T ss_dssp             EEEEETT-TT---------------SHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH
T ss_pred             ceEEeccccc---------------cHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh
Confidence            4899999988               99999999998756799999999999999999999999998 8999999998776


Q ss_pred             HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ...     ...||+|=+|+. .....|++.+.+.++.||++.+...
T Consensus       116 ~~~-----~~~fD~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  116 YSR-----QERFDVIDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             CHS-----TT-EEEEEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             hhc-----cccCCEEEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence            421     578999999985 3356899999999999999998543

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.05  E-value=1.6e-05  Score=76.16  Aligned_cols=98  Identities=17%  Similarity=0.251  Sum_probs=77.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ...+.|||+|||+               |..++..+++-  ..+|+++|-+. +.+.|++.++.+.+.+||+++.|...+
T Consensus       176 F~~kiVlDVGaGS---------------GILS~FAaqAG--A~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEd  237 (517)
T KOG1500|consen  176 FQDKIVLDVGAGS---------------GILSFFAAQAG--AKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIED  237 (517)
T ss_pred             cCCcEEEEecCCc---------------cHHHHHHHHhC--cceEEEEehhH-HHHHHHHHHhcCCccceEEEccCcccc
Confidence            3567899999999               99988888874  47999999865 889999999999999999999999877


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      +-  +     .++.|+++..+-      .++.+.|+ .+.+.|+|.|.+.
T Consensus       238 ie--L-----PEk~DviISEPMG~mL~NERMLEsYl-~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  238 IE--L-----PEKVDVIISEPMGYMLVNERMLESYL-HARKWLKPNGKMF  279 (517)
T ss_pred             cc--C-----chhccEEEeccchhhhhhHHHHHHHH-HHHhhcCCCCccc
Confidence            52  2     578999987653      23333333 4468999999875

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.02  E-value=6.7e-05  Score=69.72  Aligned_cols=92  Identities=15%  Similarity=0.104  Sum_probs=71.1

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ..+++...+-+...+...+..+|||||+|.               |..|..+++..   .+|+++|+|+..++..++.+.
T Consensus        12 FL~d~~v~~kIv~~a~~~~~d~VlEIGpG~---------------GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~   73 (259)
T COG0030          12 FLIDKNVIDKIVEAANISPGDNVLEIGPGL---------------GALTEPLLERA---ARVTAIEIDRRLAEVLKERFA   73 (259)
T ss_pred             cccCHHHHHHHHHhcCCCCCCeEEEECCCC---------------CHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc
Confidence            345666655555566666677999999999               99999999874   689999999999999888776


Q ss_pred             HhCCCCcEEEEEcchhhhH-HHHhhcCCCCceeEEEEcCC
Q 022597          181 RAGVSHKVKIKHGLAADSL-KALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l-~~l~~~~~~~~fD~vfiD~~  219 (294)
                         ..+++++++||+...- +.+      ..++.|+.+-+
T Consensus        74 ---~~~n~~vi~~DaLk~d~~~l------~~~~~vVaNlP  104 (259)
T COG0030          74 ---PYDNLTVINGDALKFDFPSL------AQPYKVVANLP  104 (259)
T ss_pred             ---cccceEEEeCchhcCcchhh------cCCCEEEEcCC
Confidence               4568999999997652 211      16788888765

>PRK04148 hypothetical protein; Provisional

Probab=97.99  E-value=8.6e-05  Score=62.56  Aligned_cols=98  Identities=13%  Similarity=0.086  Sum_probs=67.0

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcH-HHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH  186 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~-~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~  186 (294)
                      ++.|.......++++++|||||+               |. .+..+++ .  +..|+++|++++.++.++++        
T Consensus         5 ~~~l~~~~~~~~~~kileIG~Gf---------------G~~vA~~L~~-~--G~~ViaIDi~~~aV~~a~~~--------   58 (134)
T PRK04148          5 AEFIAENYEKGKNKKIVELGIGF---------------YFKVAKKLKE-S--GFDVIVIDINEKAVEKAKKL--------   58 (134)
T ss_pred             HHHHHHhcccccCCEEEEEEecC---------------CHHHHHHHHH-C--CCEEEEEECCHHHHHHHHHh--------
Confidence            34444434333456899999999               86 5555554 2  68999999999987776554        


Q ss_pred             cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccC
Q 022597          187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRV  236 (294)
Q Consensus       187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkp  236 (294)
                      .++++.+|..+--..+     -+.+|+|+.--+++..+..+-.+.+.+.-
T Consensus        59 ~~~~v~dDlf~p~~~~-----y~~a~liysirpp~el~~~~~~la~~~~~  103 (134)
T PRK04148         59 GLNAFVDDLFNPNLEI-----YKNAKLIYSIRPPRDLQPFILELAKKINV  103 (134)
T ss_pred             CCeEEECcCCCCCHHH-----HhcCCEEEEeCCCHHHHHHHHHHHHHcCC
Confidence            2678888887654444     46799999876666666666666554443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.99  E-value=5.8e-05  Score=79.11  Aligned_cols=99  Identities=14%  Similarity=0.156  Sum_probs=75.0

Q ss_pred             CCCHHHHHHHHHHHhh-hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC---CC-------------------
Q 022597          102 QVSPDQAQLLAMLVQI-LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---PE-------------------  158 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~-~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~~-------------------  158 (294)
                      .+.+..+..|-.++.. .+...++|-+||+               |...+..+...   ++                   
T Consensus       172 pl~etlAaa~l~~a~w~~~~~~l~DP~CGS---------------GTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~  236 (702)
T PRK11783        172 PLKENLAAAILLRSGWPQEGTPLLDPMCGS---------------GTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEAL  236 (702)
T ss_pred             CCcHHHHHHHHHHcCCCCCCCeEEccCCCc---------------cHHHHHHHHHHhcCCCCccccccccccCCCCCHHH
Confidence            4566666666666655 4567899999998               87776655421   11                   


Q ss_pred             -------------------CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          159 -------------------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       159 -------------------~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                                         ..+++|+|+++++++.|++|++.+|+.+.+++.++|+.+.....    ..++||+|+.+++
T Consensus       237 w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPP  312 (702)
T PRK11783        237 WQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPP  312 (702)
T ss_pred             HHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCC
Confidence                               23799999999999999999999999999999999998753221    1357999999977

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=97.98  E-value=1.9e-05  Score=72.95  Aligned_cols=149  Identities=21%  Similarity=0.306  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHHHhh----hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC---C-CCcEEEEEeCC------
Q 022597          103 VSPDQAQLLAMLVQI----LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---P-ESGCLVACERD------  168 (294)
Q Consensus       103 v~~~~~~lL~~l~~~----~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~-~~~~v~~id~~------  168 (294)
                      +++..-.-|..+++.    .-+.-++|.||..               |.+++.++..+   . .+-+++++|.=      
T Consensus        54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~r---------------Ggs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~  118 (248)
T PF05711_consen   54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWR---------------GGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEP  118 (248)
T ss_dssp             SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TT---------------SHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS-
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCC---------------CHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCC
Confidence            445544444444432    2345899999999               87776654433   1 24468888741      


Q ss_pred             --------------------hHHHHHHHHHHHHhCC-CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-ccchHHH
Q 022597          169 --------------------ARSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-KRMYQEY  226 (294)
Q Consensus       169 --------------------~~~~~~A~~~~~~~gl-~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-~~~~~~~  226 (294)
                                          .-..+..++++++.|+ .++++++.|...+.++..    +.+++-++.+|.+ -+.....
T Consensus       119 ~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~----p~~~IAll~lD~DlYesT~~a  194 (248)
T PF05711_consen  119 DEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDA----PIERIALLHLDCDLYESTKDA  194 (248)
T ss_dssp             -CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-----TT--EEEEEE---SHHHHHHH
T ss_pred             ccccccccchhhhhhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccC----CCccEEEEEEeccchHHHHHH
Confidence                                1135556666766675 568999999999887654    2467888888887 3446778


Q ss_pred             HHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeec
Q 022597          227 FELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI  284 (294)
Q Consensus       227 ~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~  284 (294)
                      ++.+.+.|.|||+|++||..+.|          .+.|+.+|.+...    +...+.++
T Consensus       195 Le~lyprl~~GGiIi~DDY~~~g----------cr~AvdeF~~~~g----i~~~l~~i  238 (248)
T PF05711_consen  195 LEFLYPRLSPGGIIIFDDYGHPG----------CRKAVDEFRAEHG----ITDPLHPI  238 (248)
T ss_dssp             HHHHGGGEEEEEEEEESSTTTHH----------HHHHHHHHHHHTT------S--EE-
T ss_pred             HHHHHhhcCCCeEEEEeCCCChH----------HHHHHHHHHHHcC----CCCccEEe
Confidence            88999999999999999985422          3467888865532    23335566

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.97  E-value=4.1e-05  Score=71.42  Aligned_cols=76  Identities=21%  Similarity=0.210  Sum_probs=64.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++..|||||.||               |..|..+..+   +.+|++||+|+.++....+.++....+++.++++||...
T Consensus        57 k~tD~VLEvGPGT---------------GnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK  118 (315)
T KOG0820|consen   57 KPTDVVLEVGPGT---------------GNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLK  118 (315)
T ss_pred             CCCCEEEEeCCCC---------------CHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccccc
Confidence            3455899999999               9999999987   579999999999999999999877777999999999865


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC
Q 022597          198 SLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      .        +...||.++.+.+
T Consensus       119 ~--------d~P~fd~cVsNlP  132 (315)
T KOG0820|consen  119 T--------DLPRFDGCVSNLP  132 (315)
T ss_pred             C--------CCcccceeeccCC
Confidence            3        1256898887654

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.94  E-value=2.4e-05  Score=71.05  Aligned_cols=95  Identities=15%  Similarity=0.207  Sum_probs=69.7

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      +.-|||||||+               |.++-.+...   +-..+++|+|+.|+++|.+  ++  ++  -.++++|.-+-+
T Consensus        51 ~~~iLDIGCGs---------------GLSg~vL~~~---Gh~wiGvDiSpsML~~a~~--~e--~e--gdlil~DMG~Gl  106 (270)
T KOG1541|consen   51 SGLILDIGCGS---------------GLSGSVLSDS---GHQWIGVDISPSMLEQAVE--RE--LE--GDLILCDMGEGL  106 (270)
T ss_pred             CcEEEEeccCC---------------CcchheeccC---CceEEeecCCHHHHHHHHH--hh--hh--cCeeeeecCCCC
Confidence            55899999999               9887665542   4578999999999999987  22  22  256777776544


Q ss_pred             HHHhhcCCCCceeEEEE--------cC------CccchHHHHHHHHhcccCCeEEEEe
Q 022597          200 KALILNGEASSYDFAFV--------DA------EKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfi--------D~------~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.-     .++||-++.        ++      ++.....||..+...|++|+..|+.
T Consensus       107 pfr-----pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  107 PFR-----PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             CCC-----CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            432     689998863        22      2444677899899999999888774

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.94  E-value=7.5e-05  Score=67.12  Aligned_cols=97  Identities=15%  Similarity=0.235  Sum_probs=65.8

Q ss_pred             EEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHH
Q 022597          123 CIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  202 (294)
Q Consensus       123 vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l  202 (294)
                      |.||||--               ||.++++.+.-. ..+++++|+++..++.|++++++.|+.++++++.||..+.++. 
T Consensus         1 vaDIGtDH---------------gyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-   63 (205)
T PF04816_consen    1 VADIGTDH---------------GYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-   63 (205)
T ss_dssp             EEEET-ST---------------THHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-
T ss_pred             Cceeccch---------------hHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-
Confidence            67999999               999999999743 5689999999999999999999999999999999999887653 


Q ss_pred             hhcCCCCceeEEEEcC-CccchHHHHHHHHhcccCCeEEE
Q 022597          203 ILNGEASSYDFAFVDA-EKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       203 ~~~~~~~~fD~vfiD~-~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                           .+..|.|++-+ +..-..++++.....++....+|
T Consensus        64 -----~e~~d~ivIAGMGG~lI~~ILe~~~~~~~~~~~lI   98 (205)
T PF04816_consen   64 -----GEDVDTIVIAGMGGELIIEILEAGPEKLSSAKRLI   98 (205)
T ss_dssp             -----GG---EEEEEEE-HHHHHHHHHHTGGGGTT--EEE
T ss_pred             -----CCCCCEEEEecCCHHHHHHHHHhhHHHhccCCeEE
Confidence                 23378876643 33334445554444443333333

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.92  E-value=6.7e-05  Score=70.40  Aligned_cols=123  Identities=15%  Similarity=0.183  Sum_probs=83.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC------CCCcEEEEEeCChHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL------PESGCLVACERDARSLE  173 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~------~~~~~v~~id~~~~~~~  173 (294)
                      +.-.++..++++..++...++.+|+|-.||+               |...+.+...+      .....++|+|+++..+.
T Consensus        27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPacGs---------------G~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~   91 (311)
T PF02384_consen   27 QFYTPREIVDLMVKLLNPKKGDSVLDPACGS---------------GGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVA   91 (311)
T ss_dssp             GC---HHHHHHHHHHHTT-TTEEEEETT-TT---------------SHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHH
T ss_pred             eeehHHHHHHHHHhhhhccccceeechhhhH---------------HHHHHHHHHhhcccccccccceeEeecCcHHHHH
Confidence            4456677899999999888888999999999               88877777643      23679999999999999


Q ss_pred             HHHHHHHHhCCCCc-EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc------------------------chHHHHH
Q 022597          174 VAKKYYERAGVSHK-VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------------MYQEYFE  228 (294)
Q Consensus       174 ~A~~~~~~~gl~~~-v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~------------------------~~~~~~~  228 (294)
                      .|+-++.-.|.... ..+..+|........    ...+||+|+.+++..                        ....+++
T Consensus        92 la~~nl~l~~~~~~~~~i~~~d~l~~~~~~----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~  167 (311)
T PF02384_consen   92 LAKLNLLLHGIDNSNINIIQGDSLENDKFI----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIE  167 (311)
T ss_dssp             HHHHHHHHTTHHCBGCEEEES-TTTSHSCT----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHH
T ss_pred             HHHhhhhhhccccccccccccccccccccc----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHH
Confidence            99988876665433 468888876432110    136899999886511                        0125778


Q ss_pred             HHHhcccCCeEEE
Q 022597          229 LLLQLIRVGGIIV  241 (294)
Q Consensus       229 ~~~~lLkpgG~iv  241 (294)
                      .+...|++||.++
T Consensus       168 ~~l~~Lk~~G~~~  180 (311)
T PF02384_consen  168 HALSLLKPGGRAA  180 (311)
T ss_dssp             HHHHTEEEEEEEE
T ss_pred             HHHhhccccccee
Confidence            8999999999643

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.90  E-value=4.9e-05  Score=74.48  Aligned_cols=110  Identities=18%  Similarity=0.285  Sum_probs=88.0

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.||||..+..               |.-|.+||.-+...|.|++-|.+...++..+.++.+.|+.+ ..+...|.
T Consensus       238 ~Pq~gERIlDmcAAP---------------GGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~  301 (460)
T KOG1122|consen  238 DPQPGERILDMCAAP---------------GGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDG  301 (460)
T ss_pred             CCCCCCeecchhcCC---------------CchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCc
Confidence            345667999999999               88999999999888999999999999999999999999875 55556666


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~-------------------------~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+......    .++||.|.+|++...                         ..++|..+.+++++||+||....
T Consensus       302 ~ef~~~~~----~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC  372 (460)
T KOG1122|consen  302 REFPEKEF----PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC  372 (460)
T ss_pred             cccccccc----CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence            54322111    348999999976111                         35677888899999999998876

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.89  E-value=7e-05  Score=63.53  Aligned_cols=110  Identities=17%  Similarity=0.283  Sum_probs=74.5

Q ss_pred             EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC------------ccchHHHHH
Q 022597          161 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------------KRMYQEYFE  228 (294)
Q Consensus       161 ~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~------------~~~~~~~~~  228 (294)
                      +|+++|+.++.++.+++.+++.++.+++++++..=......+.    .+++|+++.+-+            .......++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP----EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence            6899999999999999999999999999999987665443331    248999976632            223567888


Q ss_pred             HHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEE
Q 022597          229 LLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM  281 (294)
Q Consensus       229 ~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~  281 (294)
                      .++++|+|||+|++-  .+.|.-.    ......++.+|.+.+ +...|.+..
T Consensus        77 ~al~lL~~gG~i~iv--~Y~GH~g----G~eE~~av~~~~~~L-~~~~~~V~~  122 (140)
T PF06962_consen   77 AALELLKPGGIITIV--VYPGHPG----GKEESEAVEEFLASL-DQKEFNVLK  122 (140)
T ss_dssp             HHHHHEEEEEEEEEE--E--STCH----HHHHHHHHHHHHHTS--TTTEEEEE
T ss_pred             HHHHhhccCCEEEEE--EeCCCCC----CHHHHHHHHHHHHhC-CcceEEEEE
Confidence            889999999999884  5566421    123456788888777 333555543

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.87  E-value=0.00015  Score=65.75  Aligned_cols=107  Identities=19%  Similarity=0.213  Sum_probs=81.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.|||+||-|-               |...-.+-++ ++.- -+-||.+|+.++..+..--  +-.++|.+..|...+
T Consensus       100 tkggrvLnVGFGM---------------gIidT~iQe~-~p~~-H~IiE~hp~V~krmr~~gw--~ek~nViil~g~WeD  160 (271)
T KOG1709|consen  100 TKGGRVLNVGFGM---------------GIIDTFIQEA-PPDE-HWIIEAHPDVLKRMRDWGW--REKENVIILEGRWED  160 (271)
T ss_pred             hCCceEEEeccch---------------HHHHHHHhhc-CCcc-eEEEecCHHHHHHHHhccc--ccccceEEEecchHh
Confidence            6778999999988               7666555554 3344 4569999998876655432  134789999999999


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccc---hHHHHHHHHhcccCCeEEEEecccC
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRM---YQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~---~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      .++.+.    ++.||=|+-|...+.   ...+++.+.++|||+|++-+.|-+-
T Consensus       161 vl~~L~----d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~  209 (271)
T KOG1709|consen  161 VLNTLP----DKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG  209 (271)
T ss_pred             hhcccc----ccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence            998875    567999999987444   4567778889999999999877653

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=8.9e-05  Score=74.25  Aligned_cols=124  Identities=19%  Similarity=0.212  Sum_probs=91.4

Q ss_pred             CCCCCCCHHHHHHHHHHHhh----hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH
Q 022597           98 GSQMQVSPDQAQLLAMLVQI----LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE  173 (294)
Q Consensus        98 ~~~~~v~~~~~~lL~~l~~~----~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~  173 (294)
                      ++..|.....++.|...+.-    ...+.++|+.|||               |.+++++++..   .+|+++|++++.++
T Consensus       358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGT---------------G~iglala~~~---~~ViGvEi~~~aV~  419 (534)
T KOG2187|consen  358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGT---------------GTIGLALARGV---KRVIGVEISPDAVE  419 (534)
T ss_pred             chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecC---------------Cceehhhhccc---cceeeeecChhhcc
Confidence            34557777778888887754    3446899999999               99999999865   69999999999999


Q ss_pred             HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee-EEEEcCCccch-HHHHHHHHhcccCCeEEE
Q 022597          174 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD-FAFVDAEKRMY-QEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       174 ~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD-~vfiD~~~~~~-~~~~~~~~~lLkpgG~iv  241 (294)
                      .|+++.+.+|++ +.+|+.|-+.+.++.+.... .++=+ .+++|++.... ..++..+...-++--++.
T Consensus       420 dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~-~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvy  487 (534)
T KOG2187|consen  420 DAEKNAQINGIS-NATFIVGQAEDLFPSLLTPC-CDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVY  487 (534)
T ss_pred             hhhhcchhcCcc-ceeeeecchhhccchhcccC-CCCCceEEEECCCcccccHHHHHHHHhccCccceEE
Confidence            999999999998 59999999988887764322 12345 67889875443 444444444433444443

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.79  E-value=0.00016  Score=70.41  Aligned_cols=77  Identities=22%  Similarity=0.289  Sum_probs=63.1

Q ss_pred             EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----------cchHHHHHH
Q 022597          161 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYFEL  229 (294)
Q Consensus       161 ~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----------~~~~~~~~~  229 (294)
                      .++|+|+|+++++.|+.|.+++|+.+.|+|.++|+.+.-+.      .+.+|+|+.+++-           .-|.++.+.
T Consensus       256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~  329 (381)
T COG0116         256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------LEEYGVVISNPPYGERLGSEALVAKLYREFGRT  329 (381)
T ss_pred             eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHH
Confidence            37899999999999999999999999999999999865321      2689999999871           147777777


Q ss_pred             HHhcccCCeEEEEe
Q 022597          230 LLQLIRVGGIIVID  243 (294)
Q Consensus       230 ~~~lLkpgG~ivid  243 (294)
                      +.+.++..+..|+.
T Consensus       330 lk~~~~~ws~~v~t  343 (381)
T COG0116         330 LKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHhcCCceEEEE
Confidence            77888877777664

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.78  E-value=0.0028  Score=58.39  Aligned_cols=99  Identities=20%  Similarity=0.274  Sum_probs=64.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      +.+++||=+|=.-                ..|++++...+ ..+|+.+|+|++.++..++..++.|+.  ++.++.|.++
T Consensus        43 L~gk~il~lGDDD----------------LtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~  103 (243)
T PF01861_consen   43 LEGKRILFLGDDD----------------LTSLALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRD  103 (243)
T ss_dssp             STT-EEEEES-TT-----------------HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS
T ss_pred             ccCCEEEEEcCCc----------------HHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccc
Confidence            4578999999764                56677776544 579999999999999999999999996  9999999998


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeE
Q 022597          198 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGI  239 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~  239 (294)
                      -++.-.    .++||.+|.|++  .+...-|+......|+.-|-
T Consensus       104 ~LP~~~----~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~  143 (243)
T PF01861_consen  104 PLPEEL----RGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGC  143 (243)
T ss_dssp             ---TTT----SS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-
T ss_pred             cCCHHH----hcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCc
Confidence            876521    589999999997  45677888888888887763

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.76  E-value=7.7e-05  Score=68.11  Aligned_cols=93  Identities=12%  Similarity=0.125  Sum_probs=58.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE-EEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~-~~~gda~~  197 (294)
                      ++++|||+||||               |..+..+++. + ..+|+++|.+++++..   .++.   ..++. +...|...
T Consensus        75 ~~~~vlDiG~gt---------------G~~t~~l~~~-g-a~~v~avD~~~~~l~~---~l~~---~~~v~~~~~~ni~~  131 (228)
T TIGR00478        75 KNKIVLDVGSST---------------GGFTDCALQK-G-AKEVYGVDVGYNQLAE---KLRQ---DERVKVLERTNIRY  131 (228)
T ss_pred             CCCEEEEcccCC---------------CHHHHHHHHc-C-CCEEEEEeCCHHHHHH---HHhc---CCCeeEeecCCccc
Confidence            456899999999               9999999885 2 4789999999987654   1221   12332 22223331


Q ss_pred             hH-HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          198 SL-KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~l-~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .. ....  .+-..+|++|+..     ...+..+.++|+| |.+++
T Consensus       132 ~~~~~~~--~d~~~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       132 VTPADIF--PDFATFDVSFISL-----ISILPELDLLLNP-NDLTL  169 (228)
T ss_pred             CCHhHcC--CCceeeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence            11 1110  0124788888754     2357788899999 66553

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.73  E-value=0.00012  Score=60.48  Aligned_cols=59  Identities=22%  Similarity=0.251  Sum_probs=51.0

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++|+|||+               |+.+++++...+ .++++++|.++++.+.++++++.+++. +++++.....+
T Consensus         1 ~vlDiGa~~---------------G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANI---------------GDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCc---------------cHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence            489999999               999999998765 569999999999999999999998886 48888766543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.71  E-value=0.00023  Score=67.20  Aligned_cols=105  Identities=19%  Similarity=0.247  Sum_probs=71.0

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHC----C---CCcEEEEEeCChHHHHHHHHH--------------
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL----P---ESGCLVACERDARSLEVAKKY--------------  178 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~----~---~~~~v~~id~~~~~~~~A~~~--------------  178 (294)
                      +-+|...||.|               |--...||-.+    +   .+.+|+|+|+|++.++.|++-              
T Consensus       116 ~irIWSAgCSt---------------GEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~  180 (287)
T PRK10611        116 EYRVWSAAAST---------------GEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQ  180 (287)
T ss_pred             CEEEEEccccC---------------CHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHH
Confidence            35999999999               86443333322    2   136899999999999999764              


Q ss_pred             ----HHHh-----C-------CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEE-----cCCccchHHHHHHHHhcccCC
Q 022597          179 ----YERA-----G-------VSHKVKIKHGLAADSLKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVG  237 (294)
Q Consensus       179 ----~~~~-----g-------l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfi-----D~~~~~~~~~~~~~~~lLkpg  237 (294)
                          +.+.     |       +...|+|...|..+....     ..+.||+||.     ....+.....++.+.+.|+||
T Consensus       181 ~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg  255 (287)
T PRK10611        181 LQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD  255 (287)
T ss_pred             HHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence                1110     1       234566766666541100     1478999986     234566789999999999999


Q ss_pred             eEEEEec
Q 022597          238 GIIVIDN  244 (294)
Q Consensus       238 G~ivid~  244 (294)
                      |++++..
T Consensus       256 G~L~lG~  262 (287)
T PRK10611        256 GLLFAGH  262 (287)
T ss_pred             cEEEEeC
Confidence            9998743

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.69  E-value=0.00048  Score=65.49  Aligned_cols=85  Identities=22%  Similarity=0.156  Sum_probs=69.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++..++|.-+|.               |.-+..|+..++ +++|+++|.|++.++.|++.++.  ..+++++++++..+
T Consensus        19 ~~ggiyVD~TlG~---------------GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~nF~~   80 (305)
T TIGR00006        19 KPDGIYIDCTLGF---------------GGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDNFAN   80 (305)
T ss_pred             CCCCEEEEeCCCC---------------hHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCCHHH
Confidence            3556899999999               888999999887 49999999999999999998875  35689999999988


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCcc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKR  221 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~  221 (294)
                      ..+.+...+ ..++|.|+.|.+..
T Consensus        81 l~~~l~~~~-~~~vDgIl~DLGvS  103 (305)
T TIGR00006        81 FFEHLDELL-VTKIDGILVDLGVS  103 (305)
T ss_pred             HHHHHHhcC-CCcccEEEEeccCC
Confidence            766553322 36799999987643

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.69  E-value=0.00028  Score=71.42  Aligned_cols=83  Identities=13%  Similarity=0.054  Sum_probs=58.7

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-------CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-------~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      ..+|+|.|||+               |...+.++..++.       ...++++|+++..++.++.++...+. ..+.+..
T Consensus        32 ~~~ilDP~cGs---------------G~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~   95 (524)
T TIGR02987        32 KTKIIDPCCGD---------------GRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVIN   95 (524)
T ss_pred             ceEEEeCCCCc---------------cHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeee
Confidence            45899999999               9888888776641       25789999999999999999987762 2356666


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      +|......... ....+.||+|+.+++
T Consensus        96 ~d~l~~~~~~~-~~~~~~fD~IIgNPP  121 (524)
T TIGR02987        96 FNSLSYVLLNI-ESYLDLFDIVITNPP  121 (524)
T ss_pred             ccccccccccc-ccccCcccEEEeCCC
Confidence            66543211110 111368999998876

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.68  E-value=0.0003  Score=67.21  Aligned_cols=105  Identities=13%  Similarity=0.153  Sum_probs=72.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-----cEEEEEc
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHG  193 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-----~v~~~~g  193 (294)
                      +...++++|||-               |.-.+-.-.+-  -+.++++|+..-.++.|+++++...-..     .+.|+.+
T Consensus       117 ~~~~~~~LgCGK---------------GGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~  179 (389)
T KOG1975|consen  117 RGDDVLDLGCGK---------------GGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAA  179 (389)
T ss_pred             cccccceeccCC---------------cccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEe
Confidence            456799999999               55544444432  3689999999999999999988653332     3788888


Q ss_pred             chhh-hHHHHhhcCCCCceeEE---EEcCC----ccchHHHHHHHHhcccCCeEEE
Q 022597          194 LAAD-SLKALILNGEASSYDFA---FVDAE----KRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       194 da~~-~l~~l~~~~~~~~fD~v---fiD~~----~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      |... .+..+... .+.+||+|   |.-+.    .......+..+...|+|||+++
T Consensus       180 Dc~~~~l~d~~e~-~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI  234 (389)
T KOG1975|consen  180 DCFKERLMDLLEF-KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI  234 (389)
T ss_pred             ccchhHHHHhccC-CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence            8754 23333221 13349988   32221    3345677888899999999998

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.67  E-value=0.00024  Score=65.60  Aligned_cols=132  Identities=14%  Similarity=0.117  Sum_probs=90.2

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      ...+++...+-+...+...+...|||||+|+               |..|..++...   .+++++|.|++..+..++.+
T Consensus        11 nFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~---------------G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~   72 (262)
T PF00398_consen   11 NFLVDPNIADKIVDALDLSEGDTVLEIGPGP---------------GALTRELLKRG---KRVIAVEIDPDLAKHLKERF   72 (262)
T ss_dssp             SEEEHHHHHHHHHHHHTCGTTSEEEEESSTT---------------SCCHHHHHHHS---SEEEEEESSHHHHHHHHHHC
T ss_pred             CeeCCHHHHHHHHHhcCCCCCCEEEEeCCCC---------------ccchhhHhccc---CcceeecCcHhHHHHHHHHh
Confidence            4567888888888888888889999999999               99999999875   79999999999998888766


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhccc---CCeEEEEecccCCCcccCcc
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIR---VGGIIVIDNVLWHGKVADQM  255 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLk---pgG~ivid~vl~~g~v~~~~  255 (294)
                      .   ..++++++++|+.++-.....   ......|+.+.+-.-...++..+...-+   ...++++..=.+.--++.|.
T Consensus        73 ~---~~~~~~vi~~D~l~~~~~~~~---~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a~pg  145 (262)
T PF00398_consen   73 A---SNPNVEVINGDFLKWDLYDLL---KNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLAKPG  145 (262)
T ss_dssp             T---TCSSEEEEES-TTTSCGGGHC---SSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHTSTT
T ss_pred             h---hcccceeeecchhccccHHhh---cCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccCCCC
Confidence            5   456899999999875211000   2345677776654434456666655323   33555554433333344444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.66  E-value=0.00046  Score=62.80  Aligned_cols=107  Identities=15%  Similarity=0.141  Sum_probs=75.0

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++.+||-+|+.+               |...-.++....++|.|+++|.++...+..-...++   ..+|--+.+|+
T Consensus        70 ~ik~gskVLYLGAas---------------GTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DA  131 (229)
T PF01269_consen   70 PIKPGSKVLYLGAAS---------------GTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDA  131 (229)
T ss_dssp             S--TT-EEEEETTTT---------------SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-T
T ss_pred             CCCCCCEEEEecccC---------------CCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccC
Confidence            345667999999999               999999999998899999999999876554444443   45788899999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHH-HHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQE-YFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~-~~~~~~~lLkpgG~ivid  243 (294)
                      ..-.+-..   --+..|+||.|...++..+ +...+...||+||.+++-
T Consensus       132 r~P~~Y~~---lv~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~  177 (229)
T PF01269_consen  132 RHPEKYRM---LVEMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS  177 (229)
T ss_dssp             TSGGGGTT---TS--EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CChHHhhc---ccccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence            74221100   1368999999987665544 444555799999988863

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.64  E-value=0.00046  Score=62.05  Aligned_cols=110  Identities=21%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH-------hCC-C
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-------AGV-S  185 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~-------~gl-~  185 (294)
                      .+.+.+....+|+|||.               |-..+..+...+ -.+.+|||+.+...+.|+...+.       .|. .
T Consensus        37 ~~~l~~~dvF~DlGSG~---------------G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~  100 (205)
T PF08123_consen   37 ELNLTPDDVFYDLGSGV---------------GNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRP  100 (205)
T ss_dssp             HTT--TT-EEEEES-TT---------------SHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB--
T ss_pred             HhCCCCCCEEEECCCCC---------------CHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccc
Confidence            34455667999999999               998888777653 34589999999999888765443       233 3


Q ss_pred             CcEEEEEcchhhh--HHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEec
Q 022597          186 HKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       186 ~~v~~~~gda~~~--l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .++++.+||..+.  .+..     -..-|+||++..  .+.....+......||+|..||--.
T Consensus       101 ~~v~l~~gdfl~~~~~~~~-----~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~  158 (205)
T PF08123_consen  101 GKVELIHGDFLDPDFVKDI-----WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTK  158 (205)
T ss_dssp             -EEEEECS-TTTHHHHHHH-----GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred             ccceeeccCccccHhHhhh-----hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECC
Confidence            5788999998653  2332     245799999864  3444455566678899998887543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.61  E-value=0.00011  Score=63.49  Aligned_cols=98  Identities=19%  Similarity=0.265  Sum_probs=61.0

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+||++               |..+-.+.....+.++|+++|+.+.           ... ..+..+.+|..+.
T Consensus        23 ~~~~vlDlG~aP---------------GGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~   75 (181)
T PF01728_consen   23 KGFTVLDLGAAP---------------GGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNP   75 (181)
T ss_dssp             TTEEEEEET-TT---------------SHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEE
T ss_pred             cccEEEEcCCcc---------------cceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchh
Confidence            346999999999               8888888877645689999999987           111 3456666665431


Q ss_pred             --HHHHhhcC--CCCceeEEEEcCCc--------------cchHHHHHHHHhcccCCeEEEEe
Q 022597          199 --LKALILNG--EASSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 --l~~l~~~~--~~~~fD~vfiD~~~--------------~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                        ...+....  ..+++|+|+.|...              +-....+..+.+.|+|||.+|+-
T Consensus        76 ~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   76 ENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             EHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             hHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence              11111110  13699999999721              11233444556789999988875

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.59  E-value=0.00039  Score=58.28  Aligned_cols=74  Identities=22%  Similarity=0.304  Sum_probs=56.7

Q ss_pred             HHHHHHHHhh----hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC---CCCcEEEEEeCChHHHHHHHHHHH
Q 022597          108 AQLLAMLVQI----LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       108 ~~lL~~l~~~----~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ++++..+...    .+..+|+|+|||.               ||.+..++..+   ..+.+|+++|.+++..+.+.+..+
T Consensus        10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~---------------GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~   74 (141)
T PF13679_consen   10 AELIDSLCDSVGESKRCITVVDLGSGK---------------GYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ   74 (141)
T ss_pred             HHHHHHHHHHhhccCCCCEEEEeCCCh---------------hHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence            3444444444    5677999999999               99999999833   247899999999999999999999


Q ss_pred             HhC--CCCcEEEEEcchh
Q 022597          181 RAG--VSHKVKIKHGLAA  196 (294)
Q Consensus       181 ~~g--l~~~v~~~~gda~  196 (294)
                      +.+  ...++++..++..
T Consensus        75 ~~~~~~~~~~~~~~~~~~   92 (141)
T PF13679_consen   75 KLGSDLEKRLSFIQGDIA   92 (141)
T ss_pred             Hhcchhhccchhhccchh
Confidence            877  5455666665543

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.57  E-value=0.0011  Score=63.38  Aligned_cols=107  Identities=14%  Similarity=0.018  Sum_probs=76.6

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEE--EEcc
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKI--KHGL  194 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~--~~gd  194 (294)
                      +..++|+|||.               |.=+..++.++..   ..+++++|+|.++++.+.+.+....+. .+++  ++||
T Consensus        77 ~~~lIELGsG~---------------~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gd  140 (319)
T TIGR03439        77 GSMLVELGSGN---------------LRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGT  140 (319)
T ss_pred             CCEEEEECCCc---------------hHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEec
Confidence            44899999999               8888877777742   467999999999999999999843343 3555  8899


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcC------CccchHHHHHHHHh-cccCCeEEEE
Q 022597          195 AADSLKALILNGEASSYDFAFVDA------EKRMYQEYFELLLQ-LIRVGGIIVI  242 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~------~~~~~~~~~~~~~~-lLkpgG~ivi  242 (294)
                      +.+.+..+..........++|.-+      .+.....+++.+.+ .|+|||.+++
T Consensus       141 y~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       141 YDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             HHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            987765442211123345554322      25557788999998 9999999887

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.51  E-value=0.00017  Score=64.32  Aligned_cols=105  Identities=20%  Similarity=0.309  Sum_probs=63.9

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHC----C----CCcEEEEEeCChHHHHHHHHH-------------
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL----P----ESGCLVACERDARSLEVAKKY-------------  178 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~----~----~~~~v~~id~~~~~~~~A~~~-------------  178 (294)
                      +-+|...||+|               |-=...+|-.+    +    ...+|+|.|+|+..++.|++-             
T Consensus        32 ~lrIWSagCSt---------------GeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~   96 (196)
T PF01739_consen   32 PLRIWSAGCST---------------GEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPA   96 (196)
T ss_dssp             -EEEEETT-TT---------------THHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HH
T ss_pred             CeEEEECCCCC---------------ChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHH
Confidence            34999999999               86444333322    1    135999999999999998652             


Q ss_pred             -HHH-----hC--------CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeE
Q 022597          179 -YER-----AG--------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGI  239 (294)
Q Consensus       179 -~~~-----~g--------l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~  239 (294)
                       .++     .|        +.++|+|...|..+..+.      .+.||+||.-.     +.......++.+...|+|||+
T Consensus        97 ~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~  170 (196)
T PF01739_consen   97 YLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPP------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGY  170 (196)
T ss_dssp             HHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEE
T ss_pred             HHHHhccccCCCceeEChHHcCceEEEecccCCCCcc------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCE
Confidence             111     11        125788888887762111      57999998753     345568899999999999999


Q ss_pred             EEEecc
Q 022597          240 IVIDNV  245 (294)
Q Consensus       240 ivid~v  245 (294)
                      +++-..
T Consensus       171 L~lG~s  176 (196)
T PF01739_consen  171 LFLGHS  176 (196)
T ss_dssp             EEE-TT
T ss_pred             EEEecC
Confidence            998543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.50  E-value=0.0011  Score=61.60  Aligned_cols=115  Identities=14%  Similarity=0.118  Sum_probs=79.1

Q ss_pred             CCCCCCCHHHHHHHHHHH-----hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHH
Q 022597           98 GSQMQVSPDQAQLLAMLV-----QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSL  172 (294)
Q Consensus        98 ~~~~~v~~~~~~lL~~l~-----~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~  172 (294)
                      |+-...+.+|.+-|-...     ...+..++||||+|.               |-.|..++....   +|++.|.|+.|.
T Consensus        68 G~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGd---------------G~VT~~l~~~f~---~v~aTE~S~~Mr  129 (265)
T PF05219_consen   68 GSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGD---------------GEVTERLAPLFK---EVYATEASPPMR  129 (265)
T ss_pred             CcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCC---------------cHHHHHHHhhcc---eEEeecCCHHHH
Confidence            333456777754444433     222556899999999               999999988764   799999999874


Q ss_pred             HHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc-CC--ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          173 EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD-AE--KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       173 ~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD-~~--~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                          ..+++.|+    +++.  ..+. ..     .+.+||+|-.- .-  ......+++.+.+.|+|+|.+++.=|+
T Consensus       130 ----~rL~~kg~----~vl~--~~~w-~~-----~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVl  190 (265)
T PF05219_consen  130 ----WRLSKKGF----TVLD--IDDW-QQ-----TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVL  190 (265)
T ss_pred             ----HHHHhCCC----eEEe--hhhh-hc-----cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence                45555554    3442  2222 11     14689999532 11  234578899999999999999998887

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.50  E-value=0.0005  Score=65.21  Aligned_cols=81  Identities=22%  Similarity=0.392  Sum_probs=48.3

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh-CCCCcEEEEEcchhh-h
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD-S  198 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~-gl~~~v~~~~gda~~-~  198 (294)
                      -++||||||.-|              .-.+--++.  .+.+++|.|+|+..++.|+++++++ +++++|+++.....+ +
T Consensus       104 v~glDIGTGAsc--------------IYpLLg~~~--~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i  167 (299)
T PF05971_consen  104 VRGLDIGTGASC--------------IYPLLGAKL--YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNI  167 (299)
T ss_dssp             -EEEEES-TTTT--------------HHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SS
T ss_pred             eEeecCCccHHH--------------HHHHHhhhh--cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcccc
Confidence            379999997622              112222222  2689999999999999999999999 999999998765432 3


Q ss_pred             HHHHhhcCCCCceeEEEEcCC
Q 022597          199 LKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      +..+..  ..+.||+...+++
T Consensus       168 ~~~i~~--~~e~~dftmCNPP  186 (299)
T PF05971_consen  168 FDGIIQ--PNERFDFTMCNPP  186 (299)
T ss_dssp             TTTSTT----S-EEEEEE---
T ss_pred             chhhhc--ccceeeEEecCCc
Confidence            333322  2468999998876

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.00092  Score=60.14  Aligned_cols=101  Identities=20%  Similarity=0.191  Sum_probs=72.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|+|+|+..               |.++..+++.++.++.|++||+.|--            .-..|.++++|..+
T Consensus        44 ~~~~~ViDLGAAP---------------GgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~   96 (205)
T COG0293          44 KPGMVVVDLGAAP---------------GGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITD   96 (205)
T ss_pred             cCCCEEEEcCCCC---------------CcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccC
Confidence            3567999999999               88888888888877889999998841            22348999998764


Q ss_pred             --hHHHHhhcCCCCceeEEEEcCCc--------cc------hHHHHHHHHhcccCCeEEEEecc
Q 022597          198 --SLKALILNGEASSYDFAFVDAEK--------RM------YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 --~l~~l~~~~~~~~fD~vfiD~~~--------~~------~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                        .+..+...-...++|+|..|..+        .+      -...++.+...|+|||.+++-..
T Consensus        97 ~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f  160 (205)
T COG0293          97 EDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF  160 (205)
T ss_pred             ccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence              33333333234568999999653        11      12344555689999999998754

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.45  E-value=0.00069  Score=64.01  Aligned_cols=142  Identities=21%  Similarity=0.322  Sum_probs=102.5

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--CCC-CcEEEEE
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GVS-HKVKIKH  192 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--gl~-~~v~~~~  192 (294)
                      .+.++++++-||-|-               |..-...++. +.=+.+.-||++...++..++++...  |++ .+|.++.
T Consensus       118 s~~npkkvlVVgggD---------------ggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~i  181 (337)
T KOG1562|consen  118 SHPNPKKVLVVGGGD---------------GGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLI  181 (337)
T ss_pred             cCCCCCeEEEEecCC---------------ccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEe
Confidence            466889999999988               5443333333 32368899999999999999999863  443 5799999


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe-cccC-CCcccCcccCCcchHH
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID-NVLW-HGKVADQMVNDAKTIS  263 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid-~vl~-~g~v~~~~~~~~~~~~  263 (294)
                      ||....++...    .++||+|+.|....       ....||+.+.+.||+||+++.- +.+| +-+.         -.-
T Consensus       182 GDG~~fl~~~~----~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~---------i~e  248 (337)
T KOG1562|consen  182 GDGFLFLEDLK----ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDY---------IKE  248 (337)
T ss_pred             ccHHHHHHHhc----cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHH---------HHH
Confidence            99998888764    58999999986521       2467899999999999998762 2222 1111         123


Q ss_pred             HHHHHHHhhhCCCeEEEEeecCC
Q 022597          264 IRNFNKNLMEDERVSISMVPIGD  286 (294)
Q Consensus       264 ir~f~~~l~~~~~~~~~~lp~gd  286 (294)
                      +|+|-+.+...-.+-.+.+|+-+
T Consensus       249 ~r~~~~~~f~~t~ya~ttvPTyp  271 (337)
T KOG1562|consen  249 GRSFCYVIFDLTAYAITTVPTYP  271 (337)
T ss_pred             HHHhHHHhcCccceeeecCCCCc
Confidence            56776667666677778888744

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.35  E-value=0.0095  Score=45.34  Aligned_cols=105  Identities=22%  Similarity=0.299  Sum_probs=68.3

Q ss_pred             EEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh-HHH
Q 022597          123 CIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKA  201 (294)
Q Consensus       123 vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~-l~~  201 (294)
                      ++|+|||+               |... .+....+....++++|.++.++..++......+.. .+.+..++.... ++ 
T Consensus        52 ~ld~~~g~---------------g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-  113 (257)
T COG0500          52 VLDIGCGT---------------GRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALGGVLP-  113 (257)
T ss_pred             eEEecCCc---------------CHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEeccccCCCC-
Confidence            99999999               8877 34443332248899999999998855544331111 167777776542 11 


Q ss_pred             HhhcCCC-CceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          202 LILNGEA-SSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       202 l~~~~~~-~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      +    .. ..||++......  ......+..+.+.++|+|.+++.......
T Consensus       114 ~----~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         114 F----EDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             C----CCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            1    12 379998433221  11478888899999999999987775443

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.33  E-value=0.0019  Score=62.59  Aligned_cols=122  Identities=16%  Similarity=0.206  Sum_probs=92.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      +.|....|..-..........+.+|+|-=+||               |.=++.++...+.. +++.=|+||+.++.+++|
T Consensus        32 P~m~~NRDlsV~~l~~~~~~~~~~v~Dalsat---------------GiRgIRya~E~~~~-~v~lNDisp~Avelik~N   95 (380)
T COG1867          32 PAMEFNRDLSVLVLKAFGKLLPKRVLDALSAT---------------GIRGIRYAVETGVV-KVVLNDISPKAVELIKEN   95 (380)
T ss_pred             chhhhccchhHHHHHHhhccCCeEEeeccccc---------------chhHhhhhhhcCcc-EEEEccCCHHHHHHHHHH
Confidence            44555555433322222222277999999999               99999999988633 899999999999999999


Q ss_pred             HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++.+...+ ..++..|+...+...     ...||.|=+|+. .....|++.+.+.++.||++.+.
T Consensus        96 v~~N~~~~-~~v~n~DAN~lm~~~-----~~~fd~IDiDPF-GSPaPFlDaA~~s~~~~G~l~vT  153 (380)
T COG1867          96 VRLNSGED-AEVINKDANALLHEL-----HRAFDVIDIDPF-GSPAPFLDAALRSVRRGGLLCVT  153 (380)
T ss_pred             HHhcCccc-ceeecchHHHHHHhc-----CCCccEEecCCC-CCCchHHHHHHHHhhcCCEEEEE
Confidence            99984444 555558998777654     478999988874 23468899999999999999884

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=97.28  E-value=0.0045  Score=55.44  Aligned_cols=142  Identities=18%  Similarity=0.221  Sum_probs=94.0

Q ss_pred             CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHHH
Q 022597          104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      +|..-..+..++-..+|..|+|+|+-.               |.|++++|...-.   ..+|+++|+|-..+.-+...  
T Consensus        54 ~p~D~~~yQellw~~~P~lvIE~Gs~~---------------GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--  116 (237)
T COG3510          54 SPSDMWNYQELLWELQPSLVIEFGSRH---------------GGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--  116 (237)
T ss_pred             CHHHHHHHHHHHHhcCCceeEeecccc---------------CchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--
Confidence            555566677778888999999999999               9999998875422   36899999987665432221  


Q ss_pred             HhCCCCcEEEEEcchhhh-----HHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEecccCCCcccC
Q 022597          181 RAGVSHKVKIKHGLAADS-----LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD  253 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~-----l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~  253 (294)
                          ..+|.++.|+..+-     .+.+ ++  .-+-=+|++|.++  .....-++...++|..|-++++.|-...+.-.+
T Consensus       117 ----~p~i~f~egss~dpai~eqi~~~-~~--~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~  189 (237)
T COG3510         117 ----VPDILFIEGSSTDPAIAEQIRRL-KN--EYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGP  189 (237)
T ss_pred             ----CCCeEEEeCCCCCHHHHHHHHHH-hc--CCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCc
Confidence                34799999987652     1222 11  1223355667663  446677788889999999999988776654321


Q ss_pred             --cc-cCCcchHHHHHHHH
Q 022597          254 --QM-VNDAKTISIRNFNK  269 (294)
Q Consensus       254 --~~-~~~~~~~~ir~f~~  269 (294)
                        |. ..+....++.+|.+
T Consensus       190 ~~p~~~g~gP~~AVe~ylr  208 (237)
T COG3510         190 VLPWRFGGGPYEAVEAYLR  208 (237)
T ss_pred             ccchhcCCChHHHHHHHHH
Confidence              11 22223456666654

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.27  E-value=0.00055  Score=61.08  Aligned_cols=97  Identities=19%  Similarity=0.235  Sum_probs=75.7

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      .+.|+|+|+               |..++..+.+   ..+|+++|.+|...+.|.+|++-.|.. ++.++.||+.++-  
T Consensus        35 ~~~DLGaGs---------------GiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~--   93 (252)
T COG4076          35 TFADLGAGS---------------GILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD--   93 (252)
T ss_pred             ceeeccCCc---------------chHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc--
Confidence            789999999               9888877776   469999999999999999999877765 6999999998762  


Q ss_pred             HhhcCCCCceeEEEE---cCC--ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          202 LILNGEASSYDFAFV---DAE--KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       202 l~~~~~~~~fD~vfi---D~~--~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                            -+..|.|+.   |..  .+.....+..++..||.++.++-..+
T Consensus        94 ------fe~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v  136 (252)
T COG4076          94 ------FENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEV  136 (252)
T ss_pred             ------ccccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHH
Confidence                  245677753   221  33455677778889999988876554

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.18  E-value=0.0048  Score=58.56  Aligned_cols=86  Identities=26%  Similarity=0.261  Sum_probs=70.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+....+|.-.|.               |.-+-.++..+++.++++++|.|++.++.|++.++..+  +++++++++..+
T Consensus        22 ~~~giyiD~TlG~---------------GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~   84 (314)
T COG0275          22 KPDGIYIDGTLGA---------------GGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFAN   84 (314)
T ss_pred             CCCcEEEEecCCC---------------cHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHH
Confidence            3445899988888               88888899999888999999999999999999998755  689999999887


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCcc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKR  221 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~  221 (294)
                      ....+...+ .+++|-|+.|-+..
T Consensus        85 l~~~l~~~~-i~~vDGiL~DLGVS  107 (314)
T COG0275          85 LAEALKELG-IGKVDGILLDLGVS  107 (314)
T ss_pred             HHHHHHhcC-CCceeEEEEeccCC
Confidence            766554433 57899999987643

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.15  E-value=0.0021  Score=60.08  Aligned_cols=104  Identities=15%  Similarity=0.238  Sum_probs=70.2

Q ss_pred             CCeEEEEccccccccccccccccCCCcH----HHHHHHHHCCC----CcEEEEEeCChHHHHHHHHHHHH-----hCCC-
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYER-----AGVS-  185 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~----~sl~la~~~~~----~~~v~~id~~~~~~~~A~~~~~~-----~gl~-  185 (294)
                      +-+|...||+|               |-    .++.+.+..+.    ..+|+|.|+|...++.|++-.=.     .+++ 
T Consensus        97 ~irIWSaaCSt---------------GEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~  161 (268)
T COG1352          97 PIRIWSAACST---------------GEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPP  161 (268)
T ss_pred             ceEEEecCcCC---------------CccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCH
Confidence            55999999999               85    34444445542    57899999999999988642100     1111 


Q ss_pred             ----------------------CcEEEEEcchhhhHHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCe
Q 022597          186 ----------------------HKVKIKHGLAADSLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGG  238 (294)
Q Consensus       186 ----------------------~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG  238 (294)
                                            +.|+|...|..+... .     .+.||+||+-     -+++...+.++.....|+|||
T Consensus       162 ~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~-----~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG  235 (268)
T COG1352         162 ELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-F-----LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGG  235 (268)
T ss_pred             HHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-c-----cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCC
Confidence                                  235555555443221 1     5779999864     235567789999999999999


Q ss_pred             EEEEec
Q 022597          239 IIVIDN  244 (294)
Q Consensus       239 ~ivid~  244 (294)
                      ++++-.
T Consensus       236 ~LflG~  241 (268)
T COG1352         236 LLFLGH  241 (268)
T ss_pred             EEEEcc
Confidence            999843

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.14  E-value=0.0019  Score=61.63  Aligned_cols=88  Identities=22%  Similarity=0.169  Sum_probs=62.3

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++..++|.-.|.               |.-+.+++..+++ ++|+++|.|+++++.|++.++.  ..+++.+++++..
T Consensus        18 ~~~~g~~vD~T~G~---------------GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~--~~~r~~~~~~~F~   79 (310)
T PF01795_consen   18 PKPGGIYVDCTFGG---------------GGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK--FDDRFIFIHGNFS   79 (310)
T ss_dssp             --TT-EEEETT-TT---------------SHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC--CCTTEEEEES-GG
T ss_pred             cCCCceEEeecCCc---------------HHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh--ccceEEEEeccHH
Confidence            44556899988888               8888999998885 9999999999999999888765  3679999999998


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccc
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRM  222 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~  222 (294)
                      +....+.......++|.|++|.+...
T Consensus        80 ~l~~~l~~~~~~~~~dgiL~DLGvSS  105 (310)
T PF01795_consen   80 NLDEYLKELNGINKVDGILFDLGVSS  105 (310)
T ss_dssp             GHHHHHHHTTTTS-EEEEEEE-S--H
T ss_pred             HHHHHHHHccCCCccCEEEEccccCH
Confidence            77665554423578999999987543

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.13  E-value=0.0011  Score=59.97  Aligned_cols=125  Identities=16%  Similarity=0.210  Sum_probs=72.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      +..+.|- -.++.++....+...|-|+|||.               +    .||..++..-+|...|+-+.         
T Consensus        54 ~WP~nPv-d~iI~~l~~~~~~~viaD~GCGd---------------A----~la~~~~~~~~V~SfDLva~---------  104 (219)
T PF05148_consen   54 KWPVNPV-DVIIEWLKKRPKSLVIADFGCGD---------------A----KLAKAVPNKHKVHSFDLVAP---------  104 (219)
T ss_dssp             TSSS-HH-HHHHHHHCTS-TTS-EEEES-TT--------------------HHHHH--S---EEEEESS-S---------
T ss_pred             cCCCCcH-HHHHHHHHhcCCCEEEEECCCch---------------H----HHHHhcccCceEEEeeccCC---------
Confidence            4456665 35566666655566999999988               5    44566665568999998653         


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccC
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVN  257 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~  257 (294)
                           .+.  +...|.....-      ++++.|+++.-..  ..+|..+++.+.+.|||||.+.|-.|-  .+..     
T Consensus       105 -----n~~--Vtacdia~vPL------~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~--SRf~-----  164 (219)
T PF05148_consen  105 -----NPR--VTACDIANVPL------EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK--SRFE-----  164 (219)
T ss_dssp             -----STT--EEES-TTS-S--------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG--GG-S-----
T ss_pred             -----CCC--EEEecCccCcC------CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec--ccCc-----
Confidence                 223  55577754421      2689999875543  567999999999999999999998873  1111     


Q ss_pred             CcchHHHHHHHHHhhhCCCeEE
Q 022597          258 DAKTISIRNFNKNLMEDERVSI  279 (294)
Q Consensus       258 ~~~~~~ir~f~~~l~~~~~~~~  279 (294)
                           .+..|.+.+..- +|..
T Consensus       165 -----~~~~F~~~~~~~-GF~~  180 (219)
T PF05148_consen  165 -----NVKQFIKALKKL-GFKL  180 (219)
T ss_dssp             ------HHHHHHHHHCT-TEEE
T ss_pred             -----CHHHHHHHHHHC-CCeE
Confidence                 357787776432 4443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.09  E-value=0.004  Score=56.63  Aligned_cols=95  Identities=17%  Similarity=0.234  Sum_probs=76.8

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+.++.||||-.               ||.+.++.+..+ ..++++.|+++..++.|.++++++++.+++++..+|....
T Consensus        16 ~~~~iaDIGsDH---------------AYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~   79 (226)
T COG2384          16 QGARIADIGSDH---------------AYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV   79 (226)
T ss_pred             cCCceeeccCch---------------hHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc
Confidence            445699999999               999999999765 6789999999999999999999999999999999998655


Q ss_pred             HHHHhhcCCCCceeEEEEcC-CccchHHHHHHHHhccc
Q 022597          199 LKALILNGEASSYDFAFVDA-EKRMYQEYFELLLQLIR  235 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~-~~~~~~~~~~~~~~lLk  235 (294)
                      +..      ++.+|.+.+-+ +..-..++++.-...|+
T Consensus        80 l~~------~d~~d~ivIAGMGG~lI~~ILee~~~~l~  111 (226)
T COG2384          80 LEL------EDEIDVIVIAGMGGTLIREILEEGKEKLK  111 (226)
T ss_pred             cCc------cCCcCEEEEeCCcHHHHHHHHHHhhhhhc
Confidence            432      45899987754 33445666666666555

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.08  E-value=0.0026  Score=59.43  Aligned_cols=97  Identities=13%  Similarity=0.132  Sum_probs=61.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+++|||+|+|.               |....+.....+.-.+++++|.|+.+.+.++..++...-....... ..   
T Consensus        32 f~P~~vLD~GsGp---------------Gta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~---   92 (274)
T PF09243_consen   32 FRPRSVLDFGSGP---------------GTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RV---   92 (274)
T ss_pred             CCCceEEEecCCh---------------HHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hh---
Confidence            3567999999999               9877777777665578999999999999999987754321111111 10   


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccC
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRV  236 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkp  236 (294)
                      .....   .+..+.|+|++..-     .....++++.++..+.+
T Consensus        93 ~~~~~---~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~  133 (274)
T PF09243_consen   93 LYRDF---LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP  133 (274)
T ss_pred             hhccc---ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC
Confidence            11000   01234488876421     24456677777776655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.95  E-value=0.0051  Score=63.93  Aligned_cols=103  Identities=23%  Similarity=0.259  Sum_probs=71.7

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHC-------CC----CcEEEEEeCCh---HHH-----------HHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-------PE----SGCLVACERDA---RSL-----------EVA  175 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-------~~----~~~v~~id~~~---~~~-----------~~A  175 (294)
                      -+|+|+|-|+               |+..+...+..       ++    .-+++++|..|   +.+           +.+
T Consensus        59 ~~i~e~gfG~---------------G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~  123 (662)
T PRK01747         59 FVIAETGFGT---------------GLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLA  123 (662)
T ss_pred             EEEEecCcch---------------HHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHH
Confidence            3899999999               99888776554       21    24789999765   222           222


Q ss_pred             HHHHHH-----hCC------CC--cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccc-hHHHHHHHHhcccC
Q 022597          176 KKYYER-----AGV------SH--KVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRM-YQEYFELLLQLIRV  236 (294)
Q Consensus       176 ~~~~~~-----~gl------~~--~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~-~~~~~~~~~~lLkp  236 (294)
                      ++..+.     .|+      .+  .+++..||+.+.++.+     ...+|.+|.|+-     +++ -.++|..+.++++|
T Consensus       124 ~~l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~-----~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~  198 (662)
T PRK01747        124 EQLQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANELLPQL-----DARADAWFLDGFAPAKNPDMWSPNLFNALARLARP  198 (662)
T ss_pred             HHHHHhCCccCCCceEEEecCCcEEEEEEecCHHHHHHhc-----cccccEEEeCCCCCccChhhccHHHHHHHHHHhCC
Confidence            222221     122      11  4567889999998877     467999999964     222 47899999999999


Q ss_pred             CeEEEEe
Q 022597          237 GGIIVID  243 (294)
Q Consensus       237 gG~ivid  243 (294)
                      ||.++-.
T Consensus       199 ~~~~~t~  205 (662)
T PRK01747        199 GATLATF  205 (662)
T ss_pred             CCEEEEe
Confidence            9999854

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.94  E-value=0.012  Score=56.82  Aligned_cols=97  Identities=16%  Similarity=0.155  Sum_probs=74.1

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      -...+|+|.|.               |..+-.+....|   ++-+++.+...+..++.++. .|    |+.+.||....+
T Consensus       178 v~~avDvGgGi---------------G~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~  234 (342)
T KOG3178|consen  178 VNVAVDVGGGI---------------GRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT  234 (342)
T ss_pred             CceEEEcCCcH---------------hHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccC
Confidence            36889999999               999988888665   58899999999888777775 44    777778876543


Q ss_pred             HHHhhcCCCCceeEEEE----cC-CccchHHHHHHHHhcccCCeEEEE-ecccCC
Q 022597          200 KALILNGEASSYDFAFV----DA-EKRMYQEYFELLLQLIRVGGIIVI-DNVLWH  248 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfi----D~-~~~~~~~~~~~~~~lLkpgG~ivi-d~vl~~  248 (294)
                               .+-|+||+    +. ..++-..+|+.|++.|+|||.|++ ++|+..
T Consensus       235 ---------P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~  280 (342)
T KOG3178|consen  235 ---------PKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE  280 (342)
T ss_pred             ---------CCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence                     23458865    33 356789999999999999987665 555554

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.00082  Score=67.21  Aligned_cols=116  Identities=22%  Similarity=0.220  Sum_probs=96.2

Q ss_pred             HHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEE
Q 022597          111 LAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  190 (294)
Q Consensus       111 L~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~  190 (294)
                      ...+.+..++-+|||.=++|               |.-++..+..++.-..|++-|.+++.++..+++++.++.++.|+.
T Consensus       101 ~~~~~~~~~~l~vLealsAt---------------GlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~  165 (525)
T KOG1253|consen  101 AALLKREEKSLRVLEALSAT---------------GLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEP  165 (525)
T ss_pred             cchhhhccCcchHHHHhhhh---------------hHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhccc
Confidence            44555666778999999999               999999999998778999999999999999999999999999999


Q ss_pred             EEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          191 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .++|+....-..  ......||+|=+|+.- .-..|++.+.+.++.||++.+.-
T Consensus       166 ~~~DA~~lM~~~--~~~~~~FDvIDLDPyG-s~s~FLDsAvqav~~gGLL~vT~  216 (525)
T KOG1253|consen  166 HHSDANVLMYEH--PMVAKFFDVIDLDPYG-SPSPFLDSAVQAVRDGGLLCVTC  216 (525)
T ss_pred             ccchHHHHHHhc--cccccccceEecCCCC-CccHHHHHHHHHhhcCCEEEEEe
Confidence            999997654222  1114789999999853 34688999999999999999853

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.91  E-value=0.026  Score=57.00  Aligned_cols=136  Identities=18%  Similarity=0.245  Sum_probs=98.9

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC---CcEEEEEeCChHHHHHH
Q 022597           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE---SGCLVACERDARSLEVA  175 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~---~~~v~~id~~~~~~~~A  175 (294)
                      ...-.++.+.++|..++.....++|.|--||+               |..-+..+..+..   ...++|.|.++.....|
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGs---------------gg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~  230 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGS---------------GGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLA  230 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCch---------------hHHHHHHHHHHHhhccceeEEEEeCCHHHHHHH
Confidence            45557788899999999876677999999999               7666665655532   36799999999999999


Q ss_pred             HHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHH
Q 022597          176 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYF  227 (294)
Q Consensus       176 ~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~  227 (294)
                      +-++--.|+...+.+.++|......... ....++||+|+.+++-                            ..+..++
T Consensus       231 ~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~  309 (489)
T COG0286         231 KMNLILHGIEGDANIRHGDTLSNPKHDD-KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFL  309 (489)
T ss_pred             HHHHHHhCCCccccccccccccCCcccc-cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHH
Confidence            9999988887556777777654322210 1124679998765431                            1136788


Q ss_pred             HHHHhcccCCe---EEEEecccCCCc
Q 022597          228 ELLLQLIRVGG---IIVIDNVLWHGK  250 (294)
Q Consensus       228 ~~~~~lLkpgG---~ivid~vl~~g~  250 (294)
                      +.+...|+|||   +++.+++++.|.
T Consensus       310 ~h~~~~l~~~g~aaivl~~gvlfr~~  335 (489)
T COG0286         310 QHILYKLKPGGRAAIVLPDGVLFRGG  335 (489)
T ss_pred             HHHHHhcCCCceEEEEecCCcCcCCC
Confidence            88899999865   666677777764

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.81  E-value=0.0036  Score=56.11  Aligned_cols=97  Identities=15%  Similarity=0.222  Sum_probs=71.2

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ...+++|||+|+|+               |..+++-+++.  ...|++.|++|-....++-|.+.+|++  +.+.+.|..
T Consensus        77 tVrgkrVLd~gags---------------gLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~  137 (218)
T COG3897          77 TVRGKRVLDLGAGS---------------GLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLI  137 (218)
T ss_pred             ccccceeeeccccc---------------ChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccce--eEEeecccc
Confidence            45678999999999               98888877764  478999999999999999999999974  888887765


Q ss_pred             hhHHHHhhcCCCCceeEEEEcC---CccchHHHHHHHHhcccCCeEEEE
Q 022597          197 DSLKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~---~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .         +...||+++..-   ++......+. +...|+..|..|+
T Consensus       138 g---------~~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         138 G---------SPPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             C---------CCcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence            3         167899997632   2444445555 4455555555544

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.80  E-value=0.002  Score=62.75  Aligned_cols=106  Identities=15%  Similarity=0.228  Sum_probs=82.9

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++..++++|||.               |.....++.--  .+.+++++.++..+..+.......+++++-.++.++..
T Consensus       108 ~~~~~~~~~~~~g~---------------~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~  170 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGV---------------GGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFG  170 (364)
T ss_pred             CcccccccccCcCc---------------CchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhh
Confidence            34455799999999               88888888754  57899999999999999999998899887777666654


Q ss_pred             hhHHHHhhcCCCCceeEE-EEcCC--ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFA-FVDAE--KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~v-fiD~~--~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ....      ++..||.+ ++|..  .+.-...++.+.+.++|||+.+.-..
T Consensus       171 ~~~f------edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  171 KMPF------EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW  216 (364)
T ss_pred             cCCC------CccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence            4322      26789998 45554  45667888889999999999998554

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.76  E-value=0.012  Score=56.51  Aligned_cols=103  Identities=20%  Similarity=0.258  Sum_probs=72.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-chhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-da~~  197 (294)
                      ++.+|+-+|+|.+              |..++.+++..+ ..+|+.+|.+++.++.|++....    +.+..... +...
T Consensus       168 ~~~~V~V~GaGpI--------------GLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~  228 (350)
T COG1063         168 PGGTVVVVGAGPI--------------GLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGA  228 (350)
T ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHH
Confidence            3448999999987              888888888775 68899999999999998875431    11222222 2222


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ....+   .....+|.+|.-.+   ....++.+.+++++||.+++-.+.
T Consensus       229 ~~~~~---t~g~g~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         229 EILEL---TGGRGADVVIEAVG---SPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             HHHHH---hCCCCCCEEEECCC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence            22222   11246999998876   456788999999999999986664

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.74  E-value=0.014  Score=53.62  Aligned_cols=98  Identities=14%  Similarity=0.096  Sum_probs=71.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-cchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-gda~  196 (294)
                      .+++.|||||+.|               |..|-.+.+.-  ..+|+++|....++..   .+   ..+.||..+. .|++
T Consensus        78 ~k~kv~LDiGsST---------------GGFTd~lLq~g--Ak~VyavDVG~~Ql~~---kL---R~d~rV~~~E~tN~r  134 (245)
T COG1189          78 VKGKVVLDIGSST---------------GGFTDVLLQRG--AKHVYAVDVGYGQLHW---KL---RNDPRVIVLERTNVR  134 (245)
T ss_pred             CCCCEEEEecCCC---------------ccHHHHHHHcC--CcEEEEEEccCCccCH---hH---hcCCcEEEEecCChh
Confidence            3567999999999               88888888753  4799999998876532   11   2345666655 4555


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ...+.-.    .+..|++++|..--.....+..+..+++|+|.++.
T Consensus       135 ~l~~~~~----~~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         135 YLTPEDF----TEKPDLIVIDVSFISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             hCCHHHc----ccCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence            4433322    45889999998766777888899999999988775

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.70  E-value=0.018  Score=51.93  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=77.7

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++.+||=+|..+               |...-.++...+ .|.++++|.+++..+-.-...++   ..++--+.+||
T Consensus        73 pi~~g~~VLYLGAas---------------GTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA  133 (231)
T COG1889          73 PIKEGSKVLYLGAAS---------------GTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDA  133 (231)
T ss_pred             CcCCCCEEEEeeccC---------------CCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCCceeeeccc
Confidence            355677999999999               998889999887 89999999999887554444443   56788889998


Q ss_pred             hhhH--HHHhhcCCCCceeEEEEcCCccchHHH-HHHHHhcccCCeEEEE
Q 022597          196 ADSL--KALILNGEASSYDFAFVDAEKRMYQEY-FELLLQLIRVGGIIVI  242 (294)
Q Consensus       196 ~~~l--~~l~~~~~~~~fD~vfiD~~~~~~~~~-~~~~~~lLkpgG~ivi  242 (294)
                      ..--  ..+     -+..|+||.|...++..+. ...+...|++||.+++
T Consensus       134 ~~P~~Y~~~-----Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         134 RKPEKYRHL-----VEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             CCcHHhhhh-----cccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence            6422  222     3679999999886665544 4555779999996665

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.70  E-value=0.0034  Score=62.75  Aligned_cols=113  Identities=21%  Similarity=0.236  Sum_probs=83.5

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      .+|-+|-|.               |.....+-..+| ..+++++|++|++++.|++++....-. +.+++..|..+.+.+
T Consensus       298 ~~lvvg~gg---------------G~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~  360 (482)
T KOG2352|consen  298 KQLVVGLGG---------------GGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQR  360 (482)
T ss_pred             cEEEEecCC---------------CccccceeeecC-ccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHH
Confidence            566666666               777777666665 689999999999999999998764332 567777788888877


Q ss_pred             HhhcC-CCCceeEEEEcCCccc------------hHHHHHHHHhcccCCeEEEEecccCCCcc
Q 022597          202 LILNG-EASSYDFAFVDAEKRM------------YQEYFELLLQLIRVGGIIVIDNVLWHGKV  251 (294)
Q Consensus       202 l~~~~-~~~~fD~vfiD~~~~~------------~~~~~~~~~~lLkpgG~ivid~vl~~g~v  251 (294)
                      ..... +...||++++|.+-.+            .+.++..+...|.|.|+++++-+..+..+
T Consensus       361 ~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~  423 (482)
T KOG2352|consen  361 TAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSF  423 (482)
T ss_pred             HhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcch
Confidence            65532 4578999999865211            34566667789999999999877655443

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.58  E-value=0.004  Score=57.14  Aligned_cols=75  Identities=19%  Similarity=0.276  Sum_probs=49.7

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C------CCcEEEEEc
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V------SHKVKIKHG  193 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l------~~~v~~~~g  193 (294)
                      +|||.-+|.               |.-++-++..   +++|+++|.||-.....+.-++++.  .      ..+++++++
T Consensus        78 ~VLDaTaGL---------------G~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~  139 (234)
T PF04445_consen   78 SVLDATAGL---------------GRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG  139 (234)
T ss_dssp             -EEETT-TT---------------SHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred             EEEECCCcc---------------hHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence            899999999               9999888864   5899999999988777665555431  1      148999999


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      |+.+.++..     ..+||+|+.|+-
T Consensus       140 d~~~~L~~~-----~~s~DVVY~DPM  160 (234)
T PF04445_consen  140 DALEYLRQP-----DNSFDVVYFDPM  160 (234)
T ss_dssp             -CCCHCCCH-----SS--SEEEE--S
T ss_pred             CHHHHHhhc-----CCCCCEEEECCC
Confidence            999987621     689999999973

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.46  E-value=0.019  Score=53.12  Aligned_cols=151  Identities=16%  Similarity=0.155  Sum_probs=96.0

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++.+||=+|+++               |.+.-.+.....+++.|+++|.++..-+..-...+   -..+|--+..|+
T Consensus       153 hikpGsKVLYLGAas---------------GttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk---kRtNiiPIiEDA  214 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAAS---------------GTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK---KRTNIIPIIEDA  214 (317)
T ss_pred             eecCCceEEEeeccC---------------CceeehhhcccCCCceEEEEEecccchHHHHHHhh---ccCCceeeeccC
Confidence            456777999999999               98888888888889999999999876544333333   344677777788


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHH-HHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhh-
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFEL-LLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME-  273 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~-~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~-  273 (294)
                      +.--+.-.   .-+-.|.||.|...++....+.+ +.-.|++||-+++.-=   -...|. ...+++....|.++.-.+ 
T Consensus       215 rhP~KYRm---lVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisik---ancids-tv~ae~vFa~Ev~klqee~  287 (317)
T KOG1596|consen  215 RHPAKYRM---LVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIK---ANCIDS-TVFAEAVFAAEVKKLQEEQ  287 (317)
T ss_pred             CCchheee---eeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEe---cccccc-cccHHHHHHHHHHHHHHhc
Confidence            65322110   13578999999987766555443 3468999998887411   111111 122333333444332222 


Q ss_pred             -CCCeEEEEeecCCceEEE
Q 022597          274 -DERVSISMVPIGDGMTIC  291 (294)
Q Consensus       274 -~~~~~~~~lp~gdGl~i~  291 (294)
                       .|.-+.++-|.-.+-.++
T Consensus       288 lkP~EqvtLEP~erdha~V  306 (317)
T KOG1596|consen  288 LKPKEQVTLEPFERDHACV  306 (317)
T ss_pred             cCchheeccccccCCceEE
Confidence             455677888886665544

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.45  E-value=0.018  Score=53.84  Aligned_cols=121  Identities=13%  Similarity=0.098  Sum_probs=70.0

Q ss_pred             HHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          113 MLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       113 ~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      .++...+-...||||||-            |-+| .+-.+++...++++|+-+|.+|-.+..++..+....- .+..+++
T Consensus        62 ~la~~~GIrQFLDlGsGl------------PT~~-nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~  127 (267)
T PF04672_consen   62 YLAEEAGIRQFLDLGSGL------------PTAG-NVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQ  127 (267)
T ss_dssp             HHHCTT---EEEEET--S--------------SS--HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE
T ss_pred             HHHHhcCcceEEEcccCC------------CCCC-CHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEe
Confidence            333334667999999985            2223 4566777777799999999999999999998876532 3589999


Q ss_pred             cchhhhHHHHhhcCCCCcee------EEEEc-----CCccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          193 GLAADSLKALILNGEASSYD------FAFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD------~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      +|..+--.-+....-.+-+|      ++++.     .+..+....+..+...|.||.++++.....
T Consensus       128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred             CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence            99876422221000012333      33332     123567889999999999999999987743

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PHA01634 hypothetical protein

Probab=96.40  E-value=0.0091  Score=50.27  Aligned_cols=74  Identities=20%  Similarity=0.167  Sum_probs=57.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ..++|+|||.+.               |.|+++++..-  ..+|+++|.++...+..+++.+.+.+-++..... .   +
T Consensus        28 k~KtV~dIGA~i---------------GdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~-e---W   86 (156)
T PHA01634         28 YQRTIQIVGADC---------------GSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG-E---W   86 (156)
T ss_pred             cCCEEEEecCCc---------------cchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc-c---c
Confidence            566999999999               99999999763  4789999999999999999998876655444332 1   1


Q ss_pred             HHHHhhcCCCCceeEEEEcCC
Q 022597          199 LKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~  219 (294)
                       +     +.-++||...+|..
T Consensus        87 -~-----~~Y~~~Di~~iDCe  101 (156)
T PHA01634         87 -N-----GEYEDVDIFVMDCE  101 (156)
T ss_pred             -c-----ccCCCcceEEEEcc
Confidence             1     12589999999975

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.38  E-value=0.023  Score=54.90  Aligned_cols=99  Identities=22%  Similarity=0.270  Sum_probs=71.3

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++|+=+|+| |-             |..++.+|+++.  ++|+++|.+++..+.|++.    |-+   .++....
T Consensus       163 ~~~pG~~V~I~G~G-Gl-------------Gh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GAd---~~i~~~~  219 (339)
T COG1064         163 NVKPGKWVAVVGAG-GL-------------GHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GAD---HVINSSD  219 (339)
T ss_pred             CCCCCCEEEEECCc-HH-------------HHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CCc---EEEEcCC
Confidence            44567799999988 33             889999999884  9999999999988877664    332   2333222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+..+.+     .+.+|+|+.-.+    ...++...+.|++||.+++-.+.
T Consensus       220 ~~~~~~~-----~~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         220 SDALEAV-----KEIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             chhhHHh-----HhhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence            3444444     234999987775    45567778899999999986553

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.34  E-value=0.028  Score=54.62  Aligned_cols=166  Identities=15%  Similarity=0.179  Sum_probs=101.5

Q ss_pred             ccCCChhHHHHHHhc----CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH-HhhhCCCeEEEEccccccccccccc
Q 022597           65 VISVTPPLYDYILRN----VREPEILRQLREETAGMRGSQMQVSPDQAQLLAML-VQILGAQRCIEVGVYTVCVSSYSTS  139 (294)
Q Consensus        65 ~~~l~~~l~~Y~~~~----~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l-~~~~~~~~vLEiG~g~~~~~~~~~~  139 (294)
                      .+.-.|+-+.|....    .+..+.|.++........+.......+.+.++--+ ....++.+|||.++..         
T Consensus        96 ~~p~~p~~~a~~~~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAP---------  166 (375)
T KOG2198|consen   96 ELPWYPDNLAFEKDVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAP---------  166 (375)
T ss_pred             cCCCCcccchhhhcCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCC---------
Confidence            333344444555543    23345555666554433332222333444444333 4667888999999999         


Q ss_pred             cccCCCcHHHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHh-hcC--CCCceeE
Q 022597          140 ILSLFSGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LNG--EASSYDF  213 (294)
Q Consensus       140 ~~~~~aG~~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~-~~~--~~~~fD~  213 (294)
                            |.-++.+.+++..   .+.|++=|.++..+...+...++..- ..+.+...++...-.... ..+  +...||.
T Consensus       167 ------G~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDr  239 (375)
T KOG2198|consen  167 ------GGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKDGNDKEQLKFDR  239 (375)
T ss_pred             ------CccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceeccccccccCchhhhhhcce
Confidence                  9999998888742   46899999999998888887766543 234444444432211100 000  2468999


Q ss_pred             EEEcCCc--------------c------------chHHHHHHHHhcccCCeEEEEeccc
Q 022597          214 AFVDAEK--------------R------------MYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       214 vfiD~~~--------------~------------~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      |++|++-              +            -...++...+++|++||.+|....-
T Consensus       240 VLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS  298 (375)
T KOG2198|consen  240 VLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS  298 (375)
T ss_pred             eEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence            9999751              0            0235566667899999999998773

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.24  E-value=0.034  Score=53.39  Aligned_cols=121  Identities=20%  Similarity=0.253  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHHH---------HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH
Q 022597          103 VSPDQAQLLAML---------VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE  173 (294)
Q Consensus       103 v~~~~~~lL~~l---------~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~  173 (294)
                      ++-+.|.++.-|         .....+.+||-+|+|.+              |..++..|++++ ..+|+.+|++++.++
T Consensus       144 vs~eeGAl~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPI--------------Gl~t~l~Aka~G-A~~VVi~d~~~~Rle  208 (354)
T KOG0024|consen  144 VSFEEGALIEPLSVGVHACRRAGVKKGSKVLVLGAGPI--------------GLLTGLVAKAMG-ASDVVITDLVANRLE  208 (354)
T ss_pred             CchhhcccccchhhhhhhhhhcCcccCCeEEEECCcHH--------------HHHHHHHHHHcC-CCcEEEeecCHHHHH
Confidence            444555555444         23456679999999987              999999999986 789999999999999


Q ss_pred             HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcC-CCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          174 VAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       174 ~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~-~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .|++    .|...-...-+.+..+.+.+..++. ....+|+.|--.+.   ..-++.....++.||.+++-..
T Consensus       209 ~Ak~----~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~---~~~~~aai~a~r~gGt~vlvg~  274 (354)
T KOG0024|consen  209 LAKK----FGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGA---EVTIRAAIKATRSGGTVVLVGM  274 (354)
T ss_pred             HHHH----hCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCc---hHHHHHHHHHhccCCEEEEecc
Confidence            9987    3443211222222223333333332 23569999876543   4556677889999999877543

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.027  Score=49.37  Aligned_cols=108  Identities=17%  Similarity=0.207  Sum_probs=70.4

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC--CcEEEEEcc
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGL  194 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~--~~v~~~~gd  194 (294)
                      ...+++|+|+|.|.              .|..++.+|...+ ...|...|-|++.++-.++....+-.+  .++.+..-+
T Consensus        27 ~~rg~~ilelgggf--------------t~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~   91 (201)
T KOG3201|consen   27 KIRGRRILELGGGF--------------TGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWL   91 (201)
T ss_pred             HHhHHHHHHhcCch--------------hhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHH
Confidence            44557999999973              1777788887665 678999999999998888877655222  122222111


Q ss_pred             hhhhHHHHhhcCCCCceeEEEE-cCC--ccchHHHHHHHHhcccCCeEEEEe
Q 022597          195 AADSLKALILNGEASSYDFAFV-DAE--KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfi-D~~--~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ....  ..  ..+...||+|.. |.-  ++....+.+.+..+|+|.|..++.
T Consensus        92 ~~~a--qs--q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f  139 (201)
T KOG3201|consen   92 IWGA--QS--QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF  139 (201)
T ss_pred             Hhhh--HH--HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence            1110  00  011468999975 322  555677788889999999986654

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.03  E-value=0.019  Score=52.00  Aligned_cols=105  Identities=17%  Similarity=0.220  Sum_probs=75.5

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC------CCCcEEEEEcch
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG------VSHKVKIKHGLA  195 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g------l~~~v~~~~gda  195 (294)
                      .+.|||||.               |...+.++-..| +.-+.|.|+--+..+..++.++..+      .-.++.+...++
T Consensus        63 efaDIGCGy---------------GGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~na  126 (249)
T KOG3115|consen   63 EFADIGCGY---------------GGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNA  126 (249)
T ss_pred             eEEeeccCc---------------cchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccc
Confidence            589999988               777777777776 7789999999999999999988765      224688889999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC-cc-------chHHHHHHHHhcccCCeEEEE
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE-KR-------MYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~-~~-------~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ...++.+...|+-.+-=+.|-|+- +.       -...++....-+|++||.++.
T Consensus       127 mk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt  181 (249)
T KOG3115|consen  127 MKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT  181 (249)
T ss_pred             hhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence            888887765543333223344432 11       134566667778999998874

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=95.98  E-value=0.025  Score=52.42  Aligned_cols=87  Identities=11%  Similarity=0.148  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHhhh-CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597          106 DQAQLLAMLVQIL-GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV  184 (294)
Q Consensus       106 ~~~~lL~~l~~~~-~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl  184 (294)
                      ..-.+...+.... .+.+|+|||||.               =-.++-+.. .+++..++++|+|...++.....+...|.
T Consensus        91 ~Ld~fY~~if~~~~~p~sVlDigCGl---------------NPlalp~~~-~~~~a~Y~a~DID~~~ve~l~~~l~~l~~  154 (251)
T PF07091_consen   91 NLDEFYDEIFGRIPPPDSVLDIGCGL---------------NPLALPWMP-EAPGATYIAYDIDSQLVEFLNAFLAVLGV  154 (251)
T ss_dssp             GHHHHHHHHCCCS---SEEEEET-TT---------------CHHHHHTTT-SSTT-EEEEEESBHHHHHHHHHHHHHTT-
T ss_pred             hHHHHHHHHHhcCCCCchhhhhhccC---------------Cceehhhcc-cCCCcEEEEEeCCHHHHHHHHHHHHhhCC
Confidence            3444444444433 378999999965               333333232 33468999999999999999999999887


Q ss_pred             CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc
Q 022597          185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVD  217 (294)
Q Consensus       185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD  217 (294)
                      ..  ++...|.....+       ....|+.++=
T Consensus       155 ~~--~~~v~Dl~~~~~-------~~~~DlaLll  178 (251)
T PF07091_consen  155 PH--DARVRDLLSDPP-------KEPADLALLL  178 (251)
T ss_dssp             CE--EEEEE-TTTSHT-------TSEESEEEEE
T ss_pred             Cc--ceeEeeeeccCC-------CCCcchhhHH
Confidence            65  444445543221       5779998763

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.89  E-value=0.0098  Score=55.33  Aligned_cols=110  Identities=14%  Similarity=0.179  Sum_probs=65.1

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC------------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH------------  186 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~------------  186 (294)
                      ++.++||||||.                 .-..+..+.+.-.+|+..|..+...+..++.++..|--+            
T Consensus        56 ~g~~llDiGsGP-----------------tiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lE  118 (256)
T PF01234_consen   56 KGETLLDIGSGP-----------------TIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELE  118 (256)
T ss_dssp             -EEEEEEES-TT-------------------GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHT
T ss_pred             CCCEEEEeCCCc-----------------HHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhcc
Confidence            455899999975                 222222333323579999999999998888887643211            


Q ss_pred             ---------------cEE-EEEcchhhhHHHHhh-cCCCCceeEEEEc-------CCccchHHHHHHHHhcccCCeEEEE
Q 022597          187 ---------------KVK-IKHGLAADSLKALIL-NGEASSYDFAFVD-------AEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       187 ---------------~v~-~~~gda~~~l~~l~~-~~~~~~fD~vfiD-------~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                                     .|+ ++..|....-+ +.. .....+||.|+.-       .+...|...+..+..+|||||.+++
T Consensus       119 g~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~p-l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil  197 (256)
T PF01234_consen  119 GKREKWEEKEEKLRRAVKQVVPCDVTQPNP-LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL  197 (256)
T ss_dssp             TSSSGHHHHHHHHHHHEEEEEE--TTSSST-TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCcchhhhHHHHHHHhhceEEEeeccCCCC-CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                           111 33333322100 000 0002359998753       2356789999999999999999999


Q ss_pred             eccc
Q 022597          243 DNVL  246 (294)
Q Consensus       243 d~vl  246 (294)
                      -.++
T Consensus       198 ~~~l  201 (256)
T PF01234_consen  198 AGVL  201 (256)
T ss_dssp             EEES
T ss_pred             EEEc
Confidence            8776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.83  E-value=0.023  Score=53.02  Aligned_cols=93  Identities=16%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             cccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          140 ILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       140 ~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      ++|||||.+++.+......-..+.++|+++..++..+.++..       .++.+|..+....-.    ...+|+++.+++
T Consensus         3 v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~----~~~~D~l~~gpP   71 (275)
T cd00315           3 VIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF----IPDIDLLTGGFP   71 (275)
T ss_pred             EEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc----CCCCCEEEeCCC
Confidence            344444444444333322134678999999999888777642       155677766543210    256999998764


Q ss_pred             c------------cc-----hHHHHHHHHhcccCCeEEEEecc
Q 022597          220 K------------RM-----YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       220 ~------------~~-----~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      -            .+     +.++++. .+.++|. ++++.||
T Consensus        72 Cq~fS~ag~~~~~~d~r~~L~~~~~~~-i~~~~P~-~~v~ENV  112 (275)
T cd00315          72 CQPFSIAGKRKGFEDTRGTLFFEIIRI-LKEKKPK-YFLLENV  112 (275)
T ss_pred             ChhhhHHhhcCCCCCchHHHHHHHHHH-HHhcCCC-EEEEEcC
Confidence            1            01     2333333 3445676 7888998

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.83  E-value=0.0072  Score=60.80  Aligned_cols=98  Identities=10%  Similarity=0.109  Sum_probs=52.5

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      +.+||||||+               |..+..|...   +....++..+...- ...+.+-+.|+..-+-+.   ...-++
T Consensus       119 R~~LDvGcG~---------------aSF~a~l~~r---~V~t~s~a~~d~~~-~qvqfaleRGvpa~~~~~---~s~rLP  176 (506)
T PF03141_consen  119 RTALDVGCGV---------------ASFGAYLLER---NVTTMSFAPNDEHE-AQVQFALERGVPAMIGVL---GSQRLP  176 (506)
T ss_pred             EEEEecccee---------------ehhHHHHhhC---CceEEEcccccCCc-hhhhhhhhcCcchhhhhh---cccccc
Confidence            4789999999               8888877764   33333333332221 111222233443222111   111122


Q ss_pred             HHhhcCCCCceeEEEEc----CCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          201 ALILNGEASSYDFAFVD----AEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD----~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                           .+.+.||+|-..    .+...-.-++-.+-++|||||+++...-
T Consensus       177 -----fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  177 -----FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             -----CCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCC
Confidence                 136889999532    2222223356667899999999987643

; GO: 0008168 methyltransferase activity

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.82  E-value=0.0073  Score=58.57  Aligned_cols=109  Identities=21%  Similarity=0.234  Sum_probs=71.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..++++||+|.|.               |.+..+.-...|+-..++-+|.|+..-++.....+..+.+ +.....+|...
T Consensus       112 fapqsiLDvG~GP---------------gtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~-~td~r~s~vt~  175 (484)
T COG5459         112 FAPQSILDVGAGP---------------GTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTE-KTDWRASDVTE  175 (484)
T ss_pred             cCcchhhccCCCC---------------chhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccc-cCCCCCCccch
Confidence            3567899999999               8888887777786677888999997666655544443322 23333333322


Q ss_pred             hHHHHhhcCCCCceeEEEEcC------CccchHHHHHHHHhcccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDA------EKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~------~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      -   ...-+..+.|+++++-.      .....+.+++.++.++.|||.+|+-.-
T Consensus       176 d---Rl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr  226 (484)
T COG5459         176 D---RLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER  226 (484)
T ss_pred             h---ccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence            1   11112257888887532      223355689999999999999997543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.79  E-value=0.025  Score=54.79  Aligned_cols=87  Identities=14%  Similarity=0.089  Sum_probs=62.0

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++|||+||++               |..|..+.+.   +++|++||..+-    + ..+.   -..+|+...+|...
T Consensus       210 ~~g~~vlDLGAsP---------------GGWT~~L~~r---G~~V~AVD~g~l----~-~~L~---~~~~V~h~~~d~fr  263 (357)
T PRK11760        210 APGMRAVDLGAAP---------------GGWTYQLVRR---GMFVTAVDNGPM----A-QSLM---DTGQVEHLRADGFK  263 (357)
T ss_pred             CCCCEEEEeCCCC---------------cHHHHHHHHc---CCEEEEEechhc----C-Hhhh---CCCCEEEEeccCcc
Confidence            4677999999999               8888777764   579999996542    1 1222   24579999998876


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG  237 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg  237 (294)
                      ..+.      .+++|.++.|.. .......+.+.+.|..|
T Consensus       264 ~~p~------~~~vDwvVcDmv-e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        264 FRPP------RKNVDWLVCDMV-EKPARVAELMAQWLVNG  296 (357)
T ss_pred             cCCC------CCCCCEEEEecc-cCHHHHHHHHHHHHhcC
Confidence            5432      468999999974 23346667777777666

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.73  E-value=0.08  Score=47.45  Aligned_cols=103  Identities=19%  Similarity=0.240  Sum_probs=67.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-chhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-da~~  197 (294)
                      +..+|||+|+..               |.++.-.-+...+.|.|.+||+-.-         .   ..+.++++.+ |..|
T Consensus        69 p~~~VlD~G~AP---------------GsWsQVavqr~~p~g~v~gVDllh~---------~---p~~Ga~~i~~~dvtd  121 (232)
T KOG4589|consen   69 PEDTVLDCGAAP---------------GSWSQVAVQRVNPNGMVLGVDLLHI---------E---PPEGATIIQGNDVTD  121 (232)
T ss_pred             CCCEEEEccCCC---------------ChHHHHHHHhhCCCceEEEEeeeec---------c---CCCCcccccccccCC
Confidence            456999999999               8888877777767899999998442         1   1234666666 4443


Q ss_pred             h--HHHHhhcCCCCceeEEEEcCC-------ccchHHHHHHH-------HhcccCCeEEEEecccCCCc
Q 022597          198 S--LKALILNGEASSYDFAFVDAE-------KRMYQEYFELL-------LQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       198 ~--l~~l~~~~~~~~fD~vfiD~~-------~~~~~~~~~~~-------~~lLkpgG~ivid~vl~~g~  250 (294)
                      .  ...+.+..+..+.|.|+.|-.       ..+.....+.|       ..+++|+|.+++-  +|.|.
T Consensus       122 p~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g~  188 (232)
T KOG4589|consen  122 PETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDGS  188 (232)
T ss_pred             HHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecCC
Confidence            2  222222224678999998843       12223333443       4678999999987  67774

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=95.69  E-value=0.094  Score=49.22  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=67.3

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-------------
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-------------  186 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-------------  186 (294)
                      ..+||-=|||.               |..+..+|..   +-.+.+.|.|--|+-..+-.+....-.+             
T Consensus        57 ~~~VLVPGsGL---------------GRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn  118 (270)
T PF07942_consen   57 KIRVLVPGSGL---------------GRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN  118 (270)
T ss_pred             ccEEEEcCCCc---------------chHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence            35899999999               9999988886   6789999999998754443333211111             


Q ss_pred             --------------------------cEEEEEcchhhhHHHHhhcCCCCceeEE----EEcCCccchHHHHHHHHhcccC
Q 022597          187 --------------------------KVKIKHGLAADSLKALILNGEASSYDFA----FVDAEKRMYQEYFELLLQLIRV  236 (294)
Q Consensus       187 --------------------------~v~~~~gda~~~l~~l~~~~~~~~fD~v----fiD~~~~~~~~~~~~~~~lLkp  236 (294)
                                                ++.+..||..+....   ....++||.|    |+|. .++..+|++.+..+|||
T Consensus       119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~---~~~~~~~d~VvT~FFIDT-A~Ni~~Yi~tI~~lLkp  194 (270)
T PF07942_consen  119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGP---DENKGSFDVVVTCFFIDT-AENIIEYIETIEHLLKP  194 (270)
T ss_pred             CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCC---cccCCcccEEEEEEEeec-hHHHHHHHHHHHHHhcc
Confidence                                      233334444333211   0013689988    6777 45678999999999999


Q ss_pred             CeEEE
Q 022597          237 GGIIV  241 (294)
Q Consensus       237 gG~iv  241 (294)
                      ||+-|
T Consensus       195 gG~WI  199 (270)
T PF07942_consen  195 GGYWI  199 (270)
T ss_pred             CCEEE
Confidence            99765

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.67  E-value=0.078  Score=50.11  Aligned_cols=100  Identities=20%  Similarity=0.281  Sum_probs=64.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+++||-+|+|.+              |..++.+++... ..+|+++|.+++..+.+++    .|...-+.....+.  
T Consensus       168 ~~g~~VlV~G~G~v--------------G~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~--  226 (343)
T PRK09880        168 LQGKRVFVSGVGPI--------------GCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDL--  226 (343)
T ss_pred             CCCCEEEEECCCHH--------------HHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccH--
Confidence            35678998999765              888888888763 2379999999998877654    45432122111122  


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                        .++...  .+.+|+||-..+.   ...++.+.+.|++||.++.-..
T Consensus       227 --~~~~~~--~g~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        227 --DHYKAE--KGYFDVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             --HHHhcc--CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence              222111  2469999866553   2456678889999999987553

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.52  E-value=0.072  Score=42.78  Aligned_cols=89  Identities=20%  Similarity=0.282  Sum_probs=61.4

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHH
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE  225 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~  225 (294)
                      |..++.+++..+  ++|+++|.+++..+.++    +.|..   .++..+..+..+.+........+|.||.-.+.   ..
T Consensus         3 G~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~---~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~---~~   70 (130)
T PF00107_consen    3 GLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGAD---HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS---GD   70 (130)
T ss_dssp             HHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTES---EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS---HH
T ss_pred             HHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhccc---ccccccccccccccccccccccceEEEEecCc---HH
Confidence            888899999885  99999999999876654    45533   22332222233333222223589999987763   46


Q ss_pred             HHHHHHhcccCCeEEEEeccc
Q 022597          226 YFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       226 ~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .++...++|++||.+++-.+.
T Consensus        71 ~~~~~~~~l~~~G~~v~vg~~   91 (130)
T PF00107_consen   71 TLQEAIKLLRPGGRIVVVGVY   91 (130)
T ss_dssp             HHHHHHHHEEEEEEEEEESST
T ss_pred             HHHHHHHHhccCCEEEEEEcc
Confidence            788899999999999987654

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.50  E-value=0.026  Score=56.23  Aligned_cols=59  Identities=20%  Similarity=0.347  Sum_probs=52.3

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .|||||+||               |..++..+++.  +-.||+||.-..+.+.|++...++|.+++|+++.....+
T Consensus        69 ~vLdigtGT---------------GLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   69 FVLDIGTGT---------------GLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEccCCc---------------cHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            789999999               99999888876  356999999999999999999999999999998765544

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.48  E-value=0.11  Score=49.39  Aligned_cols=95  Identities=18%  Similarity=0.107  Sum_probs=62.6

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++||-+|+|.+              |..++.+++....+.+|+++|.+++.++.+++    ++..   ...  +  +
T Consensus       162 ~~g~~VlV~G~G~v--------------Gl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~~---~~~--~--~  216 (341)
T cd08237         162 KDRNVIGVWGDGNL--------------GYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADET---YLI--D--D  216 (341)
T ss_pred             CCCCEEEEECCCHH--------------HHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCce---eeh--h--h
Confidence            45779999999764              66666666653224689999999988877754    3321   111  1  1


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ...       ...+|+||--.+.......++...++|++||.+++-.
T Consensus       217 ~~~-------~~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         217 IPE-------DLAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             hhh-------ccCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            111       1248998865553334567888899999999998754

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.41  E-value=0.14  Score=52.05  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=70.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-----
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-----  192 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-----  192 (294)
                      .++.+|+-+|+|.+              |..++..++.++  +.|+++|.+++.++.+++    .|-.. +.+-.     
T Consensus       163 ~pg~kVlViGaG~i--------------GL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~~-v~i~~~e~~~  221 (509)
T PRK09424        163 VPPAKVLVIGAGVA--------------GLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAEF-LELDFEEEGG  221 (509)
T ss_pred             cCCCEEEEECCcHH--------------HHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCeE-EEeccccccc
Confidence            46789999999985              888888898875  689999999999887766    34321 11111     


Q ss_pred             ----------cchhhhHHHHhhcCCCCceeEEEEcCCccc--hHHH-HHHHHhcccCCeEEEEecccCCC
Q 022597          193 ----------GLAADSLKALILNGEASSYDFAFVDAEKRM--YQEY-FELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       193 ----------gda~~~l~~l~~~~~~~~fD~vfiD~~~~~--~~~~-~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                                .+..+....+..+ ....+|+||.-+..+.  .+.. .+.+.+.+||||+|+.=.+-..|
T Consensus       222 ~~~gya~~~s~~~~~~~~~~~~~-~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG  290 (509)
T PRK09424        222 SGDGYAKVMSEEFIKAEMALFAE-QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG  290 (509)
T ss_pred             cccchhhhcchhHHHHHHHHHHh-ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence                      0111111111110 0146999998765322  2344 48899999999998865443334

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=95.37  E-value=0.34  Score=45.24  Aligned_cols=113  Identities=17%  Similarity=0.129  Sum_probs=77.3

Q ss_pred             HHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHHHHhCCCCcEE
Q 022597          113 MLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVK  189 (294)
Q Consensus       113 ~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~  189 (294)
                      .++.+.++...+|+|+|+               -.-+..+..++.+   -.+.+.+|+++..++...+.+.+--..=.+.
T Consensus        72 Eia~~~g~~~lveLGsGn---------------s~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~  136 (321)
T COG4301          72 EIASITGACTLVELGSGN---------------STKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVN  136 (321)
T ss_pred             HHHHhhCcceEEEecCCc---------------cHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEe
Confidence            356677888999999988               6666777777653   2589999999998865444444322222366


Q ss_pred             EEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 022597          190 IKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      -+.+|+...+..+. +  .+.==++|+...     +.....|+..+...|+||-++++-
T Consensus       137 ~l~~~~~~~La~~~-~--~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG  192 (321)
T COG4301         137 ALCGDYELALAELP-R--GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG  192 (321)
T ss_pred             ehhhhHHHHHhccc-C--CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence            67788776665552 1  233334555432     556788999999999999998874

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=95.34  E-value=0.039  Score=51.66  Aligned_cols=95  Identities=14%  Similarity=0.110  Sum_probs=67.3

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      -.++.++-..-+...|-|+|||-               +    .||..  ..-.|++.|+-+-              .  
T Consensus       169 d~ii~~ik~r~~~~vIaD~GCGE---------------a----kiA~~--~~~kV~SfDL~a~--------------~--  211 (325)
T KOG3045|consen  169 DVIIRKIKRRPKNIVIADFGCGE---------------A----KIASS--ERHKVHSFDLVAV--------------N--  211 (325)
T ss_pred             HHHHHHHHhCcCceEEEecccch---------------h----hhhhc--cccceeeeeeecC--------------C--
Confidence            35666666666667899999987               4    33432  2367899998542              2  


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      -+++.+|..++.-      ++++.|+++....  ..++..++..+.+.|++||.+.+..|
T Consensus       212 ~~V~~cDm~~vPl------~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv  265 (325)
T KOG3045|consen  212 ERVIACDMRNVPL------EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEV  265 (325)
T ss_pred             CceeeccccCCcC------ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEeh
Confidence            3455667766321      2689999865432  46788999999999999999999888

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.21  E-value=0.019  Score=54.58  Aligned_cols=98  Identities=18%  Similarity=0.293  Sum_probs=64.1

Q ss_pred             ccccCCC--cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEE
Q 022597          139 SILSLFS--GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV  216 (294)
Q Consensus       139 ~~~~~~a--G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfi  216 (294)
                      -|+||||  ||.++-+.-.. ....|++||.||..++..+++++.+++.++..++.||-+..-+       ....|.|.+
T Consensus       197 viVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~AdrVnL  268 (351)
T KOG1227|consen  197 VIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLRADRVNL  268 (351)
T ss_pred             hhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------cccchheee
Confidence            3445555  56666333222 2578999999999999999999999999888888888865432       467888876


Q ss_pred             cCCccchHHHHHHHHhcccCC-e-EEEEecc
Q 022597          217 DAEKRMYQEYFELLLQLIRVG-G-IIVIDNV  245 (294)
Q Consensus       217 D~~~~~~~~~~~~~~~lLkpg-G-~ivid~v  245 (294)
                      ..-+.. .+-+..+.+.|+|. | ++=+|..
T Consensus       269 GLlPSs-e~~W~~A~k~Lk~eggsilHIHen  298 (351)
T KOG1227|consen  269 GLLPSS-EQGWPTAIKALKPEGGSILHIHEN  298 (351)
T ss_pred             cccccc-ccchHHHHHHhhhcCCcEEEEecc
Confidence            543221 12223355666664 4 5555544

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=95.14  E-value=0.19  Score=46.59  Aligned_cols=90  Identities=27%  Similarity=0.420  Sum_probs=55.3

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccc
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRM  222 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~  222 (294)
                      |.-.+. +..+++.-+++.+|++++-.+..+++++.   ..++++++.|..+.+..+...  ..+=-+|++|++   +.+
T Consensus        67 GSP~ia-~~llR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~allPP--~~rRglVLIDPpYE~~~d  140 (245)
T PF04378_consen   67 GSPAIA-ARLLREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALLPP--PERRGLVLIDPPYEQKDD  140 (245)
T ss_dssp             -HHHHH-HHHS-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-S---TTS-EEEEE-----STTH
T ss_pred             CCHHHH-HHhCCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhCCC--CCCCeEEEECCCCCCchH
Confidence            644443 34456678999999999999988888774   458999999999988877532  345679999986   667


Q ss_pred             hHHHHHHHHhccc--CCeEEE
Q 022597          223 YQEYFELLLQLIR--VGGIIV  241 (294)
Q Consensus       223 ~~~~~~~~~~lLk--pgG~iv  241 (294)
                      |....+.+...++  +.|+++
T Consensus       141 y~~v~~~l~~a~kR~~~G~~~  161 (245)
T PF04378_consen  141 YQRVVDALAKALKRWPTGVYA  161 (245)
T ss_dssp             HHHHHHHHHHHHHH-TTSEEE
T ss_pred             HHHHHHHHHHHHHhcCCcEEE
Confidence            8887777766555  456554

; PDB: 2OO3_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.06  E-value=0.054  Score=50.11  Aligned_cols=92  Identities=17%  Similarity=0.317  Sum_probs=55.8

Q ss_pred             cccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          140 ILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       140 ~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      ++|||||.+++.++.....--.+.++|+++...+.-+.|+.        .+..+|..+.-..-.    .+.+|+++..++
T Consensus         3 ~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l----~~~~D~l~ggpP   70 (335)
T PF00145_consen    3 VIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDL----PKDVDLLIGGPP   70 (335)
T ss_dssp             EEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHH----HHT-SEEEEE--
T ss_pred             EEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccc----cccceEEEeccC
Confidence            45566666666655544312467899999998888777774        677889887654422    115999986543


Q ss_pred             ---------------cc--chHHHHHHHHhcccCCeEEEEecc
Q 022597          220 ---------------KR--MYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       220 ---------------~~--~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                                     .+  -+.++++.+ ..++|. ++++.||
T Consensus        71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk-~~~~ENV  111 (335)
T PF00145_consen   71 CQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPK-YFLLENV  111 (335)
T ss_dssp             -TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-S-EEEEEEE
T ss_pred             CceEeccccccccccccchhhHHHHHHH-hhccce-EEEeccc
Confidence                           01  134444443 456785 6778999

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=94.97  E-value=0.034  Score=51.30  Aligned_cols=97  Identities=8%  Similarity=0.081  Sum_probs=69.8

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      ..++||||+-               |+....+....  -.+++-+|.+..+++.++..-. .++  .+....+|- +.++
T Consensus        74 p~a~diGcs~---------------G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DE-E~Ld  132 (325)
T KOG2940|consen   74 PTAFDIGCSL---------------GAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDE-EFLD  132 (325)
T ss_pred             cceeecccch---------------hhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-Cce--EEEEEecch-hccc
Confidence            4799999999               88777665432  3689999999999988765322 222  244455554 3443


Q ss_pred             HHhhcCCCCceeEEEEc---CCccchHHHHHHHHhcccCCeEEEEe
Q 022597          201 ALILNGEASSYDFAFVD---AEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD---~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                       +    .++++|+|+..   +|..+.+..+..|...|||+|.++..
T Consensus       133 -f----~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  133 -F----KENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             -c----cccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence             2    26899999865   45667888899999999999998753

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.84  E-value=0.028  Score=49.08  Aligned_cols=52  Identities=21%  Similarity=0.233  Sum_probs=32.3

Q ss_pred             HHHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597          108 AQLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK  177 (294)
Q Consensus       108 ~~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~  177 (294)
                      .+++..++...  ++..|||--+|+               |..+.+..+ +  +-+.+++|++++.+++|++
T Consensus       178 ~~l~~~lI~~~t~~gdiVlDpF~GS---------------GTT~~aa~~-l--~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  178 VELIERLIKASTNPGDIVLDPFAGS---------------GTTAVAAEE-L--GRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHHHS-TT-EEEETT-TT---------------THHHHHHHH-T--T-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccceeeehhhhcc---------------ChHHHHHHH-c--CCeEEEEeCCHHHHHHhcC
Confidence            34566666544  345677766665               544443333 3  4579999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.82  E-value=0.23  Score=47.48  Aligned_cols=102  Identities=25%  Similarity=0.310  Sum_probs=64.7

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      .+..+++||=.|+|.+              |..+..+++..  +. +|+++|.+++..+.+++    .|...-+.....+
T Consensus       188 ~i~~g~~VlV~G~G~v--------------G~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~  247 (371)
T cd08281         188 GVRPGQSVAVVGLGGV--------------GLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGATATVNAGDPN  247 (371)
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchh
Confidence            3455678888998754              77777777765  45 69999999998877654    4543222222222


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ..+.+..+   . .+.+|+||--.+.   ...++.+.+.|++||.++.-.
T Consensus       248 ~~~~i~~~---~-~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         248 AVEQVREL---T-GGGVDYAFEMAGS---VPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             HHHHHHHH---h-CCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEc
Confidence            22223322   1 2368988865432   345677788999999988644

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.69  E-value=0.081  Score=50.59  Aligned_cols=95  Identities=20%  Similarity=0.288  Sum_probs=59.9

Q ss_pred             ccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCC-ceeEEEEc
Q 022597          139 SILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYDFAFVD  217 (294)
Q Consensus       139 ~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~-~fD~vfiD  217 (294)
                      .++|||||.+++.+......--.+.++|+++..++.-+.++..      ..++.+|..+....-.    .. .+|+++-.
T Consensus         5 ~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~----~~~~~DvligG   74 (328)
T COG0270           5 KVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL----RKSDVDVLIGG   74 (328)
T ss_pred             eEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc----cccCCCEEEeC
Confidence            4667777777777665543224678999999998877777653      4566677765543221    12 78988654


Q ss_pred             CC--------cc-------c--hHHHHHHHHhcccCCeEEEEecc
Q 022597          218 AE--------KR-------M--YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       218 ~~--------~~-------~--~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ++        ++       .  +.++. .+...++| -++|+.||
T Consensus        75 pPCQ~FS~aG~r~~~~D~R~~L~~~~~-r~I~~~~P-~~fv~ENV  117 (328)
T COG0270          75 PPCQDFSIAGKRRGYDDPRGSLFLEFI-RLIEQLRP-KFFVLENV  117 (328)
T ss_pred             CCCcchhhcCcccCCcCccceeeHHHH-HHHHhhCC-CEEEEecC
Confidence            33        11       1  23333 34466777 88999999

>PRK11524 putative methyltransferase; Provisional

Probab=94.68  E-value=0.036  Score=51.83  Aligned_cols=56  Identities=5%  Similarity=-0.000  Sum_probs=39.4

Q ss_pred             HHHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          108 AQLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       108 ~~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      ..|+..++...  .+..|||--+|+               |..+++..+ +  +-+.+|+|++++.++.|+++++.
T Consensus       195 ~~L~erlI~~~S~~GD~VLDPF~GS---------------GTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNPGDIVLDPFAGS---------------FTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCC---------------cHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            35666666554  456777776666               644444333 3  46899999999999999999864

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=94.64  E-value=0.33  Score=44.83  Aligned_cols=100  Identities=21%  Similarity=0.300  Sum_probs=62.6

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ...+.+||..|+|.+              |..++.+++..  +.+|++++.+++..+.+++    .|....+.....+..
T Consensus       163 ~~~~~~vli~g~g~v--------------G~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~  222 (338)
T cd08254         163 VKPGETVLVIGLGGL--------------GLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPK  222 (338)
T ss_pred             CCCCCEEEEECCcHH--------------HHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHH
Confidence            445668888887532              77777777776  5789999999988776643    455322221111222


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.+...    ....+|.++--.+.   ...++.+.+.|+++|.++.-
T Consensus       223 ~~~~~~----~~~~~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         223 DKKAAG----LGGGFDVIFDFVGT---QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             HHHHHh----cCCCceEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            222111    24579987754332   35677889999999999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.63  E-value=0.39  Score=46.34  Aligned_cols=109  Identities=18%  Similarity=0.221  Sum_probs=69.2

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      +....++++||.+|+|.+              |..+..++++.+ ..++++++.+++..+.+++..   +. ..+.....
T Consensus       179 ~~~~~~g~~VlV~g~G~v--------------G~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~  239 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPV--------------GLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEV  239 (386)
T ss_pred             hccCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcc
Confidence            344556779999999764              788888888874 246999999999888877643   22 11222222


Q ss_pred             c-hhhhHHHHhhcCCCCceeEEEEcCCc------------------cchHHHHHHHHhcccCCeEEEEec
Q 022597          194 L-AADSLKALILNGEASSYDFAFVDAEK------------------RMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       194 d-a~~~l~~l~~~~~~~~fD~vfiD~~~------------------~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      + ..+.+..+   .....+|++|--.+.                  .+....++.+.+.|+++|.++.-.
T Consensus       240 ~~~~~~l~~~---~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         240 DDVVEALREL---TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             hHHHHHHHHH---cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            1 22222222   113469988764321                  112456788889999999998754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=94.59  E-value=0.34  Score=46.05  Aligned_cols=104  Identities=20%  Similarity=0.268  Sum_probs=65.5

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ...++++||-.|+|.+              |..++.+++..  +. +|++++.+++..+.++    +.|...-+.....+
T Consensus       173 ~~~~g~~VlV~G~g~v--------------G~~a~~~ak~~--G~~~Vi~~~~~~~~~~~~~----~~Ga~~~i~~~~~~  232 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGV--------------GDAAIAGAALA--GASKIIAVDIDDRKLEWAR----EFGATHTVNSSGTD  232 (358)
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCceEEcCCCcC
Confidence            4456789999998754              77777788876  45 5999999999887764    34543222222223


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+.+..+   .....+|+||--.+.   ...++.....+++||.+++-..
T Consensus       233 ~~~~i~~~---~~~~g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       233 PVEAIRAL---TGGFGADVVIDAVGR---PETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             HHHHHHHH---hCCCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEECC
Confidence            33333332   112468988754442   2346667889999999987543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK11524 putative methyltransferase; Provisional

Probab=94.58  E-value=0.069  Score=49.95  Aligned_cols=53  Identities=25%  Similarity=0.384  Sum_probs=41.1

Q ss_pred             cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc---------------ch----HHHHHHHHhcccCCeEEEEe
Q 022597          187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR---------------MY----QEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~---------------~~----~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..+++++|+.+.++.+.    .++||+||.|++-.               .|    .+++..+.++|+|||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l~----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKIP----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhcc----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            45789999999887663    57999999998611               12    35778888999999999874

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=94.49  E-value=0.32  Score=46.09  Aligned_cols=108  Identities=21%  Similarity=0.193  Sum_probs=64.8

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ....+++|+-.|+|.+              |..++.+++..  +.+|++++.+++..+.+++    .|...-+.....+.
T Consensus       163 ~~~~g~~VlV~G~G~v--------------G~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~  222 (349)
T TIGR03201       163 GLKKGDLVIVIGAGGV--------------GGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSA  222 (349)
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccH
Confidence            3456779999999764              77778888876  4689999999998776654    45432222212111


Q ss_pred             hhhHHHHhhcCCCCcee----EEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          196 ADSLKALILNGEASSYD----FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD----~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+..+..........+|    .||.-.+.   ...++.+.+.|++||.+++-...
T Consensus       223 ~~~~~~~~~~t~~~g~d~~~d~v~d~~g~---~~~~~~~~~~l~~~G~iv~~G~~  274 (349)
T TIGR03201       223 REVKKLIKAFAKARGLRSTGWKIFECSGS---KPGQESALSLLSHGGTLVVVGYT  274 (349)
T ss_pred             HHHHHHHHhhcccCCCCCCcCEEEECCCC---hHHHHHHHHHHhcCCeEEEECcC
Confidence            12222221111122454    55543332   34566678899999999875543

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=94.38  E-value=0.57  Score=44.64  Aligned_cols=103  Identities=14%  Similarity=0.150  Sum_probs=65.6

Q ss_pred             HhhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      ....++++||=.|+ |.+              |..++.+++..  +.+|++++.+++..+.+++   ..|...-+.....
T Consensus       154 ~~~~~g~~VlV~GaaG~v--------------G~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~  214 (348)
T PLN03154        154 CSPKKGDSVFVSAASGAV--------------GQLVGQLAKLH--GCYVVGSAGSSQKVDLLKN---KLGFDEAFNYKEE  214 (348)
T ss_pred             cCCCCCCEEEEecCccHH--------------HHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH---hcCCCEEEECCCc
Confidence            44556789999998 432              77777788876  5789999999887665542   3465432222111


Q ss_pred             -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                       +..+.+..+   . .+.+|++|-..+.    ..++.+.+.|++||.+++-.
T Consensus       215 ~~~~~~i~~~---~-~~gvD~v~d~vG~----~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        215 PDLDAALKRY---F-PEGIDIYFDNVGG----DMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             ccHHHHHHHH---C-CCCcEEEEECCCH----HHHHHHHHHhccCCEEEEEC
Confidence             333333332   1 2469988854442    35678889999999998643

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=94.36  E-value=0.065  Score=44.50  Aligned_cols=54  Identities=22%  Similarity=0.361  Sum_probs=39.9

Q ss_pred             cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccc-hHHHHHHHHhcccCCeEEEEecc
Q 022597          187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRM-YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~-~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+++..||+.+.++.+     ...+|.+|.|+-     ++. -.++|+.+.++++|||++.-..+
T Consensus        32 ~L~L~~gDa~~~l~~l-----~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~   91 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL-----DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS   91 (124)
T ss_dssp             EEEEEES-HHHHHHHB------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--
T ss_pred             EEEEEEcHHHHHHHhC-----cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec
Confidence            4678899999999987     589999999964     222 47899999999999999976544

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>PLN02740 Alcohol dehydrogenase-like

Probab=94.12  E-value=0.5  Score=45.45  Aligned_cols=103  Identities=15%  Similarity=0.229  Sum_probs=65.5

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH-  192 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-  192 (294)
                      .....+++||-+|+|.+              |..++.+++..  +. +|+++|.+++.++.+++    .|...-+.... 
T Consensus       194 ~~~~~g~~VlV~G~G~v--------------G~~a~q~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~  253 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAV--------------GLAVAEGARAR--GASKIIGVDINPEKFEKGKE----MGITDFINPKDS  253 (381)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHC--CCCcEEEEcCChHHHHHHHH----cCCcEEEecccc
Confidence            44566789999999765              77777888876  35 69999999998877754    45533222211 


Q ss_pred             -cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEec
Q 022597          193 -GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN  244 (294)
Q Consensus       193 -gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~  244 (294)
                       .+..+.+..+.    .+.+|+||--.+..   ..++.....+++| |.+++-.
T Consensus       254 ~~~~~~~v~~~~----~~g~dvvid~~G~~---~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        254 DKPVHERIREMT----GGGVDYSFECAGNV---EVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             cchHHHHHHHHh----CCCCCEEEECCCCh---HHHHHHHHhhhcCCCEEEEEc
Confidence             11223333331    23699888665532   4566677788886 8877633

>PRK13699 putative methylase; Provisional

Probab=94.10  E-value=0.083  Score=48.09  Aligned_cols=51  Identities=14%  Similarity=0.226  Sum_probs=40.0

Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc------------------chHHHHHHHHhcccCCeEEEE
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------MYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~------------------~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .++++||+.+.++.+.    ++++|+||.|++-.                  -+..+++.+.+.|||||.+++
T Consensus         2 ~~l~~gD~le~l~~lp----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARFP----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhCC----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3688999999988874    68999999997621                  123566777899999999875

>PLN02827 Alcohol dehydrogenase-like

Probab=94.10  E-value=0.5  Score=45.61  Aligned_cols=103  Identities=18%  Similarity=0.195  Sum_probs=64.6

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE--c
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--G  193 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~--g  193 (294)
                      +...+++||-.|+|.+              |..++.++++.. ...+++++.+++..+.|+    +.|...-+....  .
T Consensus       190 ~~~~g~~VlV~G~G~v--------------G~~~iqlak~~G-~~~vi~~~~~~~~~~~a~----~lGa~~~i~~~~~~~  250 (378)
T PLN02827        190 DVSKGSSVVIFGLGTV--------------GLSVAQGAKLRG-ASQIIGVDINPEKAEKAK----TFGVTDFINPNDLSE  250 (378)
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCcEEEcccccch
Confidence            4556789999998764              777777888763 236889999998776664    356532222211  1


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEec
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN  244 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~  244 (294)
                      +..+.+..+.    .+.+|+||--.+.   ...+..+.+.+++| |.+++-.
T Consensus       251 ~~~~~v~~~~----~~g~d~vid~~G~---~~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        251 PIQQVIKRMT----GGGADYSFECVGD---TGIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             HHHHHHHHHh----CCCCCEEEECCCC---hHHHHHHHHhhccCCCEEEEEC
Confidence            2222333321    2369988865543   23466778889998 9998643

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=93.98  E-value=0.13  Score=46.36  Aligned_cols=105  Identities=9%  Similarity=0.062  Sum_probs=63.8

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHH------HHHHHHHHHhCCCCcEEE
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSL------EVAKKYYERAGVSHKVKI  190 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~------~~A~~~~~~~gl~~~v~~  190 (294)
                      ..++..|+|+=.|.               ||.|.-++.++.+.|.|++.-.++-..      ...+...++.... +++.
T Consensus        46 lkpg~tVid~~PGg---------------Gy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~  109 (238)
T COG4798          46 LKPGATVIDLIPGG---------------GYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEV  109 (238)
T ss_pred             cCCCCEEEEEecCC---------------ccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhh
Confidence            34556999999998               999999999998888999886655311      1112222222222 2444


Q ss_pred             EEcchhhhHHHHhhcCCCCceeEEEEcC----------CccchHHHHHHHHhcccCCeEEEEec
Q 022597          191 KHGLAADSLKALILNGEASSYDFAFVDA----------EKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~----------~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +..+.....       ..+..|+++...          ........+..+.+.|||||++++.+
T Consensus       110 ~~~~~~A~~-------~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d  166 (238)
T COG4798         110 IGKPLVALG-------APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED  166 (238)
T ss_pred             hCCcccccC-------CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence            332222111       145566664311          12335677888899999999987754

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=93.83  E-value=0.63  Score=43.53  Aligned_cols=102  Identities=21%  Similarity=0.289  Sum_probs=63.5

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      .+.++++||=+|+|.+              |..++.+++..  +.+ |++++.+++..+.++    +.|...-+.....+
T Consensus       160 ~~~~g~~vlV~G~G~v--------------G~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~  219 (339)
T cd08239         160 GVSGRDTVLVVGAGPV--------------GLGALMLARAL--GAEDVIGVDPSPERLELAK----ALGADFVINSGQDD  219 (339)
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEECCCHHHHHHHH----HhCCCEEEcCCcch
Confidence            4456779998998754              77777777776  456 999999998776654    34543222222122


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                       .+.+..+.   ....+|++|--.+.   ...++...+.|+++|.+++-.
T Consensus       220 -~~~~~~~~---~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         220 -VQEIRELT---SGAGADVAIECSGN---TAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             -HHHHHHHh---CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence             22222221   13469998865543   234566778999999998643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.74  E-value=0.58  Score=41.18  Aligned_cols=95  Identities=17%  Similarity=0.320  Sum_probs=54.9

Q ss_pred             cHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHH------------HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee
Q 022597          146 GYSSLAIALVLPE-SGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  212 (294)
Q Consensus       146 G~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~------------~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD  212 (294)
                      ||.++.+|..+.. +-+|+++|++++.++..++            .+++..-..+.++. .|..+.+         ...|
T Consensus         9 GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---------~~ad   78 (185)
T PF03721_consen    9 GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---------KDAD   78 (185)
T ss_dssp             STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH---------HH-S
T ss_pred             CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh---------hccc
Confidence            6666666665532 5699999999997766542            11111112233332 2332222         3468


Q ss_pred             EEEEcCC----------ccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597          213 FAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       213 ~vfiD~~----------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      ++|+..+          ........+.+.+.+++|-++++......|.
T Consensus        79 v~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt  126 (185)
T PF03721_consen   79 VVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT  126 (185)
T ss_dssp             EEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH
T ss_pred             eEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee
Confidence            8887644          1124667777888999999999999888886

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=93.66  E-value=0.71  Score=40.13  Aligned_cols=112  Identities=21%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             CCCCCCHHHHHHHHHHHhh--hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597           99 SQMQVSPDQAQLLAMLVQI--LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK  176 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~  176 (294)
                      +|.--++++++.|...+..  .+..+|+=|||=+               -+  ..+.....++.+++..|.|.+...   
T Consensus         3 sQfwYs~~T~~~l~~~l~~~~~~~~~iaclstPs---------------l~--~~l~~~~~~~~~~~Lle~D~RF~~---   62 (162)
T PF10237_consen    3 SQFWYSDETAEFLARELLDGALDDTRIACLSTPS---------------LY--EALKKESKPRIQSFLLEYDRRFEQ---   62 (162)
T ss_pred             cccccCHHHHHHHHHHHHHhcCCCCEEEEEeCcH---------------HH--HHHHhhcCCCccEEEEeecchHHh---
Confidence            3445677777777776654  4456899998855               22  222222234678999999987542   


Q ss_pred             HHHHHhCCCCcEEEEEcchhh--hHH-HHhhcCCCCceeEEEEcCCc---cchHHHHHHHHhcccCCeEEEEe
Q 022597          177 KYYERAGVSHKVKIKHGLAAD--SLK-ALILNGEASSYDFAFVDAEK---RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       177 ~~~~~~gl~~~v~~~~gda~~--~l~-~l~~~~~~~~fD~vfiD~~~---~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                           .|  .. .++.=|...  .++ .+     .++||+|++|++-   +-...+.+.+.-++++++-+++-
T Consensus        63 -----~~--~~-~F~fyD~~~p~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~  122 (162)
T PF10237_consen   63 -----FG--GD-EFVFYDYNEPEELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILC  122 (162)
T ss_pred             -----cC--Cc-ceEECCCCChhhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEe
Confidence                 22  12 233333322  222 23     5799999999982   23344455666677887777654

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=93.62  E-value=0.13  Score=49.85  Aligned_cols=120  Identities=13%  Similarity=0.139  Sum_probs=83.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH------
Q 022597          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE------  173 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~------  173 (294)
                      .-.++++..-+++.++...+++-|.|=-+||               |..-+..+.   -|+.|+|.|+|-.++.      
T Consensus       189 nTSmDAeLSli~AN~Amv~pGdivyDPFVGT---------------GslLvsaa~---FGa~viGtDIDyr~vragrg~~  250 (421)
T KOG2671|consen  189 NTSMDAELSLIMANQAMVKPGDIVYDPFVGT---------------GSLLVSAAH---FGAYVIGTDIDYRTVRAGRGED  250 (421)
T ss_pred             CcccchhHHHHHhhhhccCCCCEEecCcccc---------------Cceeeehhh---hcceeeccccchheeecccCCC
Confidence            4467888888888888888888888866666               544333333   2689999999998876      


Q ss_pred             -HHHHHHHHhCCCC-cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-------------------------------
Q 022597          174 -VAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-------------------------------  220 (294)
Q Consensus       174 -~A~~~~~~~gl~~-~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-------------------------------  220 (294)
                       -.+.|+++.|.++ -+.+..+|...-  .+..   ...||.|+.|++-                               
T Consensus       251 ~si~aNFkQYg~~~~fldvl~~D~sn~--~~rs---n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~  325 (421)
T KOG2671|consen  251 ESIKANFKQYGSSSQFLDVLTADFSNP--PLRS---NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTE  325 (421)
T ss_pred             cchhHhHHHhCCcchhhheeeecccCc--chhh---cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccc
Confidence             4578999999554 467777776532  1111   4689999999760                               


Q ss_pred             -----cchHHHHHHHHhcccCCeEEEE
Q 022597          221 -----RMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       221 -----~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                           ..+...+....+.|..||.+++
T Consensus       326 ~ysl~~~v~dll~fss~~L~~ggrlv~  352 (421)
T KOG2671|consen  326 QYSLSSLVYDLLCFSSRRLVDGGRLVF  352 (421)
T ss_pred             hhHHHHHHhhHHHhhHhhhhcCceEEE
Confidence                 0023455555688999999975

>PRK13699 putative methylase; Provisional

Probab=93.62  E-value=0.087  Score=47.93  Aligned_cols=56  Identities=9%  Similarity=-0.014  Sum_probs=38.8

Q ss_pred             HHHHHHHhh--hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          109 QLLAMLVQI--LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       109 ~lL~~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      .++..++..  .++..|||--||+               |..+++..+ +  +-+.+|+|++++..+.|.++++..
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gs---------------gtt~~aa~~-~--~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGS---------------GSTCVAALQ-S--GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCC---------------CHHHHHHHH-c--CCCEEEEecCHHHHHHHHHHHHHH
Confidence            345555432  3456788877776               655554443 2  468899999999999999998763

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=93.37  E-value=0.41  Score=44.43  Aligned_cols=102  Identities=17%  Similarity=0.203  Sum_probs=60.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH-----HhCCCCcEEEEEc
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-----RAGVSHKVKIKHG  193 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~-----~~gl~~~v~~~~g  193 (294)
                      ...+|||+|+||               |..++..+...  ...++.-|... ..+..+.+..     .+++...+.+..-
T Consensus        86 ~~~~vlELGsGt---------------glvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L  147 (248)
T KOG2793|consen   86 KYINVLELGSGT---------------GLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAIL  147 (248)
T ss_pred             cceeEEEecCCc---------------cHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEE
Confidence            456899999999               99999888865  46666555543 3333333322     2233323444332


Q ss_pred             chhhh--HHHHhhcCCCCc-eeEEEE-cCC--ccchHHHHHHHHhcccCCeEEEEe
Q 022597          194 LAADS--LKALILNGEASS-YDFAFV-DAE--KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 da~~~--l~~l~~~~~~~~-fD~vfi-D~~--~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +..+.  ....     .+. +|+|+. |..  .+.+......+..+|..+|++.+-
T Consensus       148 ~Wg~~~~~~~~-----~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~  198 (248)
T KOG2793|consen  148 VWGNALDVSFR-----LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA  198 (248)
T ss_pred             ecCCcccHhhc-----cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence            22221  1111     233 899875 332  456777888888899999855544

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=93.35  E-value=1.1  Score=42.97  Aligned_cols=104  Identities=17%  Similarity=0.232  Sum_probs=64.9

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH-  192 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-  192 (294)
                      .....+++||=.|+|.+              |..++.+|+..  +. +|+++|.+++..+.+++    .|...-+.... 
T Consensus       181 ~~~~~g~~VlV~G~G~i--------------G~~a~q~Ak~~--G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~  240 (368)
T TIGR02818       181 AKVEEGDTVAVFGLGGI--------------GLSVIQGARMA--KASRIIAIDINPAKFELAKK----LGATDCVNPNDY  240 (368)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----hCCCeEEccccc
Confidence            34456789999999764              77778888876  35 79999999998777644    45533222211 


Q ss_pred             -cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597          193 -GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  245 (294)
Q Consensus       193 -gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v  245 (294)
                       .+..+.+.++.    .+.+|++|--.+.   ...+..+.+.+++| |.+++-..
T Consensus       241 ~~~~~~~v~~~~----~~g~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       241 DKPIQEVIVEIT----DGGVDYSFECIGN---VNVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             chhHHHHHHHHh----CCCCCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEec
Confidence             11122222221    2368988865542   34566778889886 88775443

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.21  E-value=0.5  Score=44.77  Aligned_cols=97  Identities=12%  Similarity=0.161  Sum_probs=62.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeC---ChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACER---DARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~---~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ..+++|+-+|+|.+              |..+..+++..  +.+|++++.   +++..+.+    ++.|... +.....+
T Consensus       171 ~~g~~vlI~G~G~v--------------G~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~----~~~Ga~~-v~~~~~~  229 (355)
T cd08230         171 WNPRRALVLGAGPI--------------GLLAALLLRLR--GFEVYVLNRRDPPDPKADIV----EELGATY-VNSSKTP  229 (355)
T ss_pred             CCCCEEEEECCCHH--------------HHHHHHHHHHc--CCeEEEEecCCCCHHHHHHH----HHcCCEE-ecCCccc
Confidence            35678999999865              88888888876  468999987   56655544    4455431 2211111


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+    . ..  ...+|.||--.+..   ..++...+.|++||.+++-..
T Consensus       230 ~~~----~-~~--~~~~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         230 VAE----V-KL--VGEFDLIIEATGVP---PLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             hhh----h-hh--cCCCCEEEECcCCH---HHHHHHHHHccCCcEEEEEec
Confidence            111    1 11  35799988766532   367778899999999986443

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=93.19  E-value=0.28  Score=46.65  Aligned_cols=91  Identities=15%  Similarity=0.237  Sum_probs=55.6

Q ss_pred             cccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC
Q 022597          140 ILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  218 (294)
Q Consensus       140 ~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~  218 (294)
                      |+|||||.+++.+..... +.+ +.++|+++...+.-+.++.     +  .+..+|..+....-     -..+|+++..+
T Consensus         1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-----~~~~dvl~gg~   67 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-----IPDFDILLGGF   67 (315)
T ss_pred             CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-----CCCcCEEEecC
Confidence            466777777777666543 344 5689999998887777653     1  34567776654321     24589887543


Q ss_pred             C--------c----cc-----hHHHHHHHHhcccCCeEEEEecc
Q 022597          219 E--------K----RM-----YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       219 ~--------~----~~-----~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +        +    .+     +.++++.+ +.++|. ++++.||
T Consensus        68 PCq~fS~ag~~~~~~d~r~~L~~~~~r~i-~~~~P~-~~v~ENV  109 (315)
T TIGR00675        68 PCQPFSIAGKRKGFEDTRGTLFFEIVRIL-KEKKPK-FFLLENV  109 (315)
T ss_pred             CCcccchhcccCCCCCchhhHHHHHHHHH-hhcCCC-EEEeecc
Confidence            3        1    01     33344333 456775 8888998

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=93.15  E-value=1.3  Score=41.50  Aligned_cols=102  Identities=14%  Similarity=0.115  Sum_probs=64.3

Q ss_pred             HhhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      ....++++||=.|+ |.+              |..++.+++..  +.++++++.+++..+.+++.   .|..+-+.....
T Consensus       147 ~~~~~g~~VlI~Ga~G~v--------------G~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~  207 (338)
T cd08295         147 CKPKKGETVFVSAASGAV--------------GQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEE  207 (338)
T ss_pred             cCCCCCCEEEEecCccHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCc
Confidence            44566789998887 332              66777777776  57899999888876665542   455432221111


Q ss_pred             -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                       +..+.+..+   . ...+|++|--.+.    ..++.+.+.|+++|.++.-
T Consensus       208 ~~~~~~i~~~---~-~~gvd~v~d~~g~----~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         208 PDLDAALKRY---F-PNGIDIYFDNVGG----KMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             ccHHHHHHHh---C-CCCcEEEEECCCH----HHHHHHHHHhccCcEEEEe
Confidence             333333332   1 2569998854432    4577888999999998853

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=93.11  E-value=1.5  Score=40.09  Aligned_cols=101  Identities=21%  Similarity=0.244  Sum_probs=64.0

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      .++++||-+|+|.+              |..+..++++.  +. +|+++|.+++..+.+++    .|...-+..  .+..
T Consensus       119 ~~g~~VlV~G~G~v--------------G~~~~~~ak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~--~~~~  176 (280)
T TIGR03366       119 LKGRRVLVVGAGML--------------GLTAAAAAAAA--GAARVVAADPSPDRRELALS----FGATALAEP--EVLA  176 (280)
T ss_pred             CCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----cCCcEecCc--hhhH
Confidence            35678999999764              77777788876  34 48899999987766654    454321111  1111


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +.+..+.   ....+|.+|.-.+.   ...++.+.+.|+++|.++.-...
T Consensus       177 ~~~~~~~---~~~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       177 ERQGGLQ---NGRGVDVALEFSGA---TAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             HHHHHHh---CCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence            2222221   12469998865543   34567788999999999876543

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=92.82  E-value=1  Score=43.84  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=62.5

Q ss_pred             hhCCCeEEEEc-cccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHh----CCCCcEEE
Q 022597          117 ILGAQRCIEVG-VYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERA----GVSHKVKI  190 (294)
Q Consensus       117 ~~~~~~vLEiG-~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~----gl~~~v~~  190 (294)
                      ...+++|+=+| +|.+              |..++.++++... ..+|+++|.+++.++.+++.+...    |..  ..+
T Consensus       173 ~~~g~~VlV~G~~G~v--------------G~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~  236 (410)
T cd08238         173 IKPGGNTAILGGAGPM--------------GLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLY  236 (410)
T ss_pred             CCCCCEEEEEeCCCHH--------------HHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEE
Confidence            34557888887 5543              7777777777532 247999999999999888753211    221  122


Q ss_pred             EE----cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          191 KH----GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       191 ~~----gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +.    .+..+.+..+.   ....+|.+|...+.   ...++...+.++++|.+++
T Consensus       237 i~~~~~~~~~~~v~~~t---~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~  286 (410)
T cd08238         237 VNPATIDDLHATLMELT---GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF  286 (410)
T ss_pred             ECCCccccHHHHHHHHh---CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence            21    12222232221   13469999876542   3566778889998875543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08293 PTGR2 Prostaglandin reductase

Probab=92.81  E-value=1.4  Score=41.21  Aligned_cols=95  Identities=16%  Similarity=0.180  Sum_probs=59.3

Q ss_pred             CeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          121 QRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       121 ~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++||=.|. |.+              |..++.++++.  +. +|++++.+++..+.+++.   .|..+-+.....+..+.
T Consensus       156 ~~VlI~ga~g~v--------------G~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~  216 (345)
T cd08293         156 QTMVVSGAAGAC--------------GSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAER  216 (345)
T ss_pred             CEEEEECCCcHH--------------HHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHH
Confidence            78988886 332              77777778776  45 799999998876655442   46543222222223333


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +..+   . ...+|.||-..+..    .++.+++.|+++|.++.
T Consensus       217 i~~~---~-~~gvd~vid~~g~~----~~~~~~~~l~~~G~iv~  252 (345)
T cd08293         217 LREL---C-PEGVDVYFDNVGGE----ISDTVISQMNENSHIIL  252 (345)
T ss_pred             HHHH---C-CCCceEEEECCCcH----HHHHHHHHhccCCEEEE
Confidence            3333   1 25699888544321    35678899999999885

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=92.72  E-value=1  Score=42.34  Aligned_cols=104  Identities=15%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ....+++||=.|+|.+              |..++.+++...  .+ |++++.+++..+.++    +.|...-+.....+
T Consensus       157 ~~~~g~~vlV~G~g~v--------------G~~~~~~a~~~G--~~~v~~~~~~~~~~~~~~----~~Ga~~~i~~~~~~  216 (347)
T PRK10309        157 QGCEGKNVIIIGAGTI--------------GLLAIQCAVALG--AKSVTAIDINSEKLALAK----SLGAMQTFNSREMS  216 (347)
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC--CCeEEEECCCHHHHHHHH----HcCCceEecCcccC
Confidence            3345679998998764              777777888763  54 789999998877654    34543212221112


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                       .+.+..+.   ....+|-+++|..-.  ...+....+.|++||.+++-..
T Consensus       217 -~~~~~~~~---~~~~~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        217 -APQIQSVL---RELRFDQLILETAGV--PQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             -HHHHHHHh---cCCCCCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence             12222221   134688455554321  3466778899999999987544

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=92.66  E-value=1.6  Score=41.59  Aligned_cols=104  Identities=19%  Similarity=0.224  Sum_probs=65.7

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      .+...+++||=.|+|.+              |..++.+++..+  . +|++++.+++..+.+++    .|...-+.....
T Consensus       182 ~~~~~g~~VlV~G~G~v--------------G~~a~~~ak~~G--~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~  241 (368)
T cd08300         182 AKVEPGSTVAVFGLGAV--------------GLAVIQGAKAAG--ASRIIGIDINPDKFELAKK----FGATDCVNPKDH  241 (368)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----cCCCEEEccccc
Confidence            34556789999998764              777778888763  5 79999999998776643    455322222111


Q ss_pred             --chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597          194 --LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  245 (294)
Q Consensus       194 --da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v  245 (294)
                        +..+.+.++.    .+.+|+||--.+.   ...+..+.+.++++ |.++.-..
T Consensus       242 ~~~~~~~v~~~~----~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         242 DKPIQQVLVEMT----DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             chHHHHHHHHHh----CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEcc
Confidence              1222233321    2369999865542   24566778889887 88876443

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=92.62  E-value=1.6  Score=40.30  Aligned_cols=103  Identities=15%  Similarity=0.160  Sum_probs=64.0

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      .....++++||=.|...++             |..++.+++..  +.+|++++.+++..+.+++    .|..+-+.....
T Consensus       138 ~~~~~~g~~vlI~ga~g~v-------------G~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~  198 (329)
T cd08294         138 ICKPKAGETVVVNGAAGAV-------------GSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTV  198 (329)
T ss_pred             hcCCCCCCEEEEecCccHH-------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCc
Confidence            3445667889888853311             76777778776  5789999999887766544    465432222222


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +..+.+..+   . ...+|+||--.+.    ..++..++.|+++|.++.-
T Consensus       199 ~~~~~v~~~---~-~~gvd~vld~~g~----~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         199 SLEEALKEA---A-PDGIDCYFDNVGG----EFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             cHHHHHHHH---C-CCCcEEEEECCCH----HHHHHHHHhhccCCEEEEE
Confidence            332333322   1 2569988843332    4567888999999998753

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.62  E-value=1.3  Score=41.86  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=61.5

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ....++++||-.|+|.+              |..+..+++..  +.+|++++.+++..+.++    +.|...-+.     
T Consensus       161 ~~~~~g~~VlV~G~g~i--------------G~~a~~~a~~~--G~~vi~~~~~~~~~~~a~----~~Ga~~vi~-----  215 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGS--------------AHLTAQVALAQ--GATVHVMTRGAAARRLAL----ALGAASAGG-----  215 (329)
T ss_pred             cCCCCCCEEEEEcCCHH--------------HHHHHHHHHHC--CCeEEEEeCChHHHHHHH----HhCCceecc-----
Confidence            34456779999998643              66666677765  578999999998766554    466543221     


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+.        ..+.+|.++.....   ...++...+.|++||.+++-..
T Consensus       216 ~~~~--------~~~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       216 AYDT--------PPEPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             cccc--------CcccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence            1110        02457876653332   2467788899999999987544

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.62  E-value=1.2  Score=39.19  Aligned_cols=100  Identities=21%  Similarity=0.285  Sum_probs=62.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++||-.|+|. .             |.....+++..  +.+|++++.+++..+.+++    .|...-+.....+..+
T Consensus       133 ~~~~~vli~g~~~-~-------------G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~  192 (271)
T cd05188         133 KPGDTVLVLGAGG-V-------------GLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEE  192 (271)
T ss_pred             CCCCEEEEECCCH-H-------------HHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHH
Confidence            5677999999874 2             77777777765  4889999999887666543    3432212221112221


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+.    ....+.+|.++......   ..++.+.+.|+++|.++.-.
T Consensus       193 ~~~----~~~~~~~d~vi~~~~~~---~~~~~~~~~l~~~G~~v~~~  232 (271)
T cd05188         193 ELR----LTGGGGADVVIDAVGGP---ETLAQALRLLRPGGRIVVVG  232 (271)
T ss_pred             HHH----HhcCCCCCEEEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence            111    11246799998765431   45666788899999988643

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.48  E-value=0.71  Score=36.40  Aligned_cols=85  Identities=24%  Similarity=0.236  Sum_probs=56.8

Q ss_pred             cHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh--HHHHhhcCCCCceeEEEEcCCccc
Q 022597          146 GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAEKRM  222 (294)
Q Consensus       146 G~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~--l~~l~~~~~~~~fD~vfiD~~~~~  222 (294)
                      |..+..+++.+..++ .|+.+|.+++..+.+++    .|    +.++.||+.+.  +++..    -.+.|.+++..+...
T Consensus         7 g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~----i~~a~~vv~~~~~d~   74 (116)
T PF02254_consen    7 GRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAG----IEKADAVVILTDDDE   74 (116)
T ss_dssp             SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTT----GGCESEEEEESSSHH
T ss_pred             CHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcC----ccccCEEEEccCCHH
Confidence            778888888886566 89999999998765543    23    67889998763  33331    468999988776443


Q ss_pred             hHHHHHHHHhcccCCeEEEE
Q 022597          223 YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       223 ~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ..-..-...+.+.|...+++
T Consensus        75 ~n~~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   75 ENLLIALLARELNPDIRIIA   94 (116)
T ss_dssp             HHHHHHHHHHHHTTTSEEEE
T ss_pred             HHHHHHHHHHHHCCCCeEEE
Confidence            33333344466677766664

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=92.48  E-value=1.5  Score=41.28  Aligned_cols=106  Identities=24%  Similarity=0.305  Sum_probs=66.2

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ....+++||-.|+|.+              |..++.+++..+ ...+++++.+++..+.++    ..|...-+.....+.
T Consensus       163 ~~~~g~~vlI~g~g~i--------------G~~~~~lak~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~  223 (351)
T cd08285         163 NIKLGDTVAVFGIGPV--------------GLMAVAGARLRG-AGRIIAVGSRPNRVELAK----EYGATDIVDYKNGDV  223 (351)
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCCceEecCCCCCH
Confidence            4455678888888754              777777888764 236899999988776665    355532222222232


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+.+..+.   ....+|.+|-..+.   ...+..+++.|+++|.++.-.+.
T Consensus       224 ~~~i~~~~---~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~~  268 (351)
T cd08285         224 VEQILKLT---GGKGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNYY  268 (351)
T ss_pred             HHHHHHHh---CCCCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEeccc
Confidence            22232221   13469988865442   24577888999999998864443

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.07  E-value=0.81  Score=39.75  Aligned_cols=113  Identities=13%  Similarity=0.064  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          106 DQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       106 ~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      +|-+-...++...+..+.+|+|+|-               |...++.++..  --.-+++|+||=.+.+++-..-++|+.
T Consensus        59 eQv~nVLSll~~n~~GklvDlGSGD---------------GRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~  121 (199)
T KOG4058|consen   59 EQVENVLSLLRGNPKGKLVDLGSGD---------------GRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCA  121 (199)
T ss_pred             HHHHHHHHHccCCCCCcEEeccCCC---------------ceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcc
Confidence            3333333444444556899999999               98888777753  135689999999999999988899999


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..+.|...|....  .      -..|..+.+-......+.+-..+..-+..|..++..
T Consensus       122 k~trf~RkdlwK~--d------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  122 KSTRFRRKDLWKV--D------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             cchhhhhhhhhhc--c------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence            8888887666432  1      245666655554555566666666677777777654

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=91.95  E-value=2.6  Score=39.12  Aligned_cols=102  Identities=18%  Similarity=0.197  Sum_probs=63.4

Q ss_pred             HHhhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          114 LVQILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       114 l~~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      .....++++||=.|. |.+              |..++.+++..  +.++++++.+++..+.++    +.|...-+....
T Consensus       133 ~~~~~~g~~VLI~ga~g~v--------------G~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~  192 (325)
T TIGR02825       133 ICGVKGGETVMVNAAAGAV--------------GSVVGQIAKLK--GCKVVGAAGSDEKVAYLK----KLGFDVAFNYKT  192 (325)
T ss_pred             HhCCCCCCEEEEeCCccHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----HcCCCEEEeccc
Confidence            344566789988885 332              77777777775  578999999988766554    456532222211


Q ss_pred             c-chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          193 G-LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       193 g-da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      . +..+.+...    ..+.+|++|-..+.    ..++..++.|++||.++.-
T Consensus       193 ~~~~~~~~~~~----~~~gvdvv~d~~G~----~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       193 VKSLEETLKKA----SPDGYDCYFDNVGG----EFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             cccHHHHHHHh----CCCCeEEEEECCCH----HHHHHHHHHhCcCcEEEEe
Confidence            1 222222222    13469998854432    3457788999999999864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.92  E-value=1.2  Score=42.94  Aligned_cols=106  Identities=15%  Similarity=0.171  Sum_probs=66.9

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEE--E
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--H  192 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~--~  192 (294)
                      +...++..|.-+|.|.|              |.+.+.-+++.+ .+++++||+|++-.+.|++    .|..+-+.-.  .
T Consensus       188 Akv~~GstvAVfGLG~V--------------GLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~----fGaTe~iNp~d~~  248 (375)
T KOG0022|consen  188 AKVEPGSTVAVFGLGGV--------------GLAVAMGAKAAG-ASRIIGVDINPDKFEKAKE----FGATEFINPKDLK  248 (375)
T ss_pred             cccCCCCEEEEEecchH--------------HHHHHHhHHhcC-cccEEEEecCHHHHHHHHh----cCcceecChhhcc
Confidence            45567789999999765              655555566543 6899999999999987765    4443322221  1


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEeccc
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVL  246 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~vl  246 (294)
                      ....+.+.++-    ++.+|+-|.-.+.   .+.+..++..-++| |.-++=.+-
T Consensus       249 ~~i~evi~EmT----dgGvDysfEc~G~---~~~m~~al~s~h~GwG~sv~iGv~  296 (375)
T KOG0022|consen  249 KPIQEVIIEMT----DGGVDYSFECIGN---VSTMRAALESCHKGWGKSVVIGVA  296 (375)
T ss_pred             ccHHHHHHHHh----cCCceEEEEecCC---HHHHHHHHHHhhcCCCeEEEEEec
Confidence            13445555542    5789999976543   34455555566667 666554443

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=91.78  E-value=2.2  Score=40.56  Aligned_cols=105  Identities=16%  Similarity=0.240  Sum_probs=64.3

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-  193 (294)
                      ....++++||=.|+|.+              |..++.+++..+ ..+|++++.+++..+.++    ..|...-+..... 
T Consensus       183 ~~~~~g~~VlV~G~g~v--------------G~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~----~~Ga~~~i~~~~~~  243 (369)
T cd08301         183 AKVKKGSTVAIFGLGAV--------------GLAVAEGARIRG-ASRIIGVDLNPSKFEQAK----KFGVTEFVNPKDHD  243 (369)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCceEEcccccc
Confidence            44566789999998754              777777887763 237999999998877664    3554322222110 


Q ss_pred             -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597          194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  245 (294)
Q Consensus       194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v  245 (294)
                       +..+.+..+.    .+.+|++|--.+.   ...+..+.+.+++| |.+++-..
T Consensus       244 ~~~~~~v~~~~----~~~~d~vid~~G~---~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         244 KPVQEVIAEMT----GGGVDYSFECTGN---IDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             hhHHHHHHHHh----CCCCCEEEECCCC---hHHHHHHHHHhhcCCCEEEEECc
Confidence             1122233321    2368987754432   34566677888996 88876444

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=91.75  E-value=0.12  Score=51.42  Aligned_cols=61  Identities=18%  Similarity=0.192  Sum_probs=51.0

Q ss_pred             ccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc-EEEEEcchhhhHH
Q 022597          139 SILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLK  200 (294)
Q Consensus       139 ~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~-v~~~~gda~~~l~  200 (294)
                      -+.|+|||.+..++-.+.. +++|++-|+++++++..+.+++.+.+.+. ++++..|+.+.++
T Consensus       252 vv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  252 VVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             hhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            3567788877776666554 79999999999999999999999888876 9999999988774

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=91.72  E-value=0.7  Score=47.14  Aligned_cols=101  Identities=16%  Similarity=0.214  Sum_probs=61.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH------  192 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~------  192 (294)
                      ++.+|+-+|+|.+              |..+..+++.+  ++.|+.+|.+++.++.+++    .|... +++-.      
T Consensus       163 p~akVlViGaG~i--------------Gl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~~-v~v~~~e~g~~  221 (511)
T TIGR00561       163 PPAKVLVIGAGVA--------------GLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAEF-LELDFKEEGGS  221 (511)
T ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCeE-Eeccccccccc
Confidence            4579999999874              88888888877  4779999999998776654    33321 11111      


Q ss_pred             ---------cchhhhHHHHhhcCCCCceeEEEEcC---CccchHHHHHHHHhcccCCeEEE
Q 022597          193 ---------GLAADSLKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       193 ---------gda~~~l~~l~~~~~~~~fD~vfiD~---~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                               .+..+...++..+ ....+|+||.-+   +++...-..+...+.+|||++|+
T Consensus       222 ~~gYa~~~s~~~~~~~~~~~~e-~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       222 GDGYAKVMSEEFIAAEMELFAA-QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             cccceeecCHHHHHHHHHHHHH-HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence                     1111111111110 025699997655   22222235667789999999876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.62  E-value=0.77  Score=42.86  Aligned_cols=88  Identities=16%  Similarity=0.158  Sum_probs=58.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++++|+=+|+|.+              |..++.+++..+ ...|+++|.+++.++.|.+.    .      ++  |..+.
T Consensus       144 ~~~~vlV~G~G~v--------------G~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~  196 (308)
T TIGR01202       144 KVLPDLIVGHGTL--------------GRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD  196 (308)
T ss_pred             CCCcEEEECCCHH--------------HHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc
Confidence            4568998999875              888888888764 23477889888876655431    1      11  11110


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                         .     ...+|.||--.+.   ...++.+.++|++||.+++-.
T Consensus       197 ---~-----~~g~Dvvid~~G~---~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       197 ---P-----RRDYRAIYDASGD---PSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             ---c-----CCCCCEEEECCCC---HHHHHHHHHhhhcCcEEEEEe
Confidence               0     3468988866553   245677889999999999643

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=91.60  E-value=2.1  Score=40.39  Aligned_cols=102  Identities=16%  Similarity=0.170  Sum_probs=61.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++++||=.|+|.+              |..+..+++..  +. +|++++.+++..+.+    ++.|...-+.....+..+
T Consensus       177 ~g~~vlI~g~g~v--------------G~~~~~lak~~--G~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~~~~~~~  236 (361)
T cd08231         177 AGDTVVVQGAGPL--------------GLYAVAAAKLA--GARRVIVIDGSPERLELA----REFGADATIDIDELPDPQ  236 (361)
T ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHHc--CCCeEEEEcCCHHHHHHH----HHcCCCeEEcCcccccHH
Confidence            5678888888654              77777788876  45 899999988876555    345653322222111111


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ....+........+|++|--.+.   ...++..++.|+++|.++.-
T Consensus       237 ~~~~i~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~  279 (361)
T cd08231         237 RRAIVRDITGGRGADVVIEASGH---PAAVPEGLELLRRGGTYVLV  279 (361)
T ss_pred             HHHHHHHHhCCCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence            11112111123569988865432   24566778899999999854

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=91.50  E-value=2.2  Score=40.78  Aligned_cols=105  Identities=16%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      .+...+++||-.|...|-             |..++.|++++.  ++++++..+++..+    .+++.|-++-+.+...|
T Consensus       138 ~~l~~g~~VLV~gaaGgV-------------G~~aiQlAk~~G--~~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~  198 (326)
T COG0604         138 AGLKPGETVLVHGAAGGV-------------GSAAIQLAKALG--ATVVAVVSSSEKLE----LLKELGADHVINYREED  198 (326)
T ss_pred             cCCCCCCEEEEecCCchH-------------HHHHHHHHHHcC--CcEEEEecCHHHHH----HHHhcCCCEEEcCCccc
Confidence            445567899999854411             666667777763  46777777775443    45566766556666666


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+.++++.   ....+|+||-..+.    +.+......|+++|.++.-..
T Consensus       199 ~~~~v~~~t---~g~gvDvv~D~vG~----~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         199 FVEQVRELT---GGKGVDVVLDTVGG----DTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             HHHHHHHHc---CCCCceEEEECCCH----HHHHHHHHHhccCCEEEEEec
Confidence            666665542   13469999866543    456667888999999887444

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=91.29  E-value=0.4  Score=48.96  Aligned_cols=101  Identities=12%  Similarity=0.077  Sum_probs=72.5

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHH---CCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~---~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.-+|.|.               |-..-+..++   .....+++++|.||.++-..+. .+..+..++|+++.+|.++
T Consensus       369 tVimvlGaGR---------------GPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~  432 (649)
T KOG0822|consen  369 TVIMVLGAGR---------------GPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRK  432 (649)
T ss_pred             EEEEEecCCC---------------ccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccc
Confidence            4677789998               8766554444   3345789999999998765544 5555677899999999988


Q ss_pred             hHHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +-+.      ..+.|+++..     ++-+--++.+.-+.+.|+|+|+-|-.
T Consensus       433 w~ap------~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  433 WNAP------REQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             cCCc------hhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence            6421      2678888532     22344578888899999999887643

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=91.24  E-value=2.4  Score=39.80  Aligned_cols=105  Identities=13%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      ....++++||=.|+|.+              |..++.+++..  +. +|++++.+++..+.+++    .|...-+.....
T Consensus       168 ~~~~~g~~vlI~g~g~v--------------G~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~  227 (351)
T cd08233         168 SGFKPGDTALVLGAGPI--------------GLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEV  227 (351)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCcc
Confidence            34456678888887643              77777778776  45 78999999988776644    354322222222


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +..+.+..+   .....+|+++--.+.   ...++.+++.|+++|.++.-..
T Consensus       228 ~~~~~l~~~---~~~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         228 DVVAEVRKL---TGGGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CHHHHHHHH---hCCCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEcc
Confidence            333333332   112459999865532   2356778889999999886433

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=91.05  E-value=3.3  Score=40.36  Aligned_cols=108  Identities=18%  Similarity=0.240  Sum_probs=65.6

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-c
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-G  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-g  193 (294)
                      .....+++||=.|+|.+              |..++.+++... ...++++|.+++..+.|++    .|.. .+.... .
T Consensus       181 ~~~~~g~~VlV~G~G~i--------------G~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~  240 (393)
T TIGR02819       181 AGVGPGSTVYIAGAGPV--------------GLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDA  240 (393)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcc
Confidence            34456678877888764              777777888764 2346677888887777654    4542 121111 1


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccc-----------hHHHHHHHHhcccCCeEEEEecc
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~-----------~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +..+.+..+.   ....+|++|.-.+...           ....++.+.+++++||.+++-.+
T Consensus       241 ~~~~~v~~~~---~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       241 TLPEQIEQIL---GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             cHHHHHHHHc---CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            2223233321   1246898886554321           12468888999999999998554

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=91.00  E-value=1.6  Score=42.13  Aligned_cols=94  Identities=14%  Similarity=0.184  Sum_probs=66.8

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      .+|.-||-|.+              |.-+..+|..+  ++.|+-+|+|.+.+++....+.     .|++.+..+...+..
T Consensus       169 ~kv~iiGGGvv--------------gtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee  227 (371)
T COG0686         169 AKVVVLGGGVV--------------GTNAAKIAIGL--GADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEE  227 (371)
T ss_pred             ccEEEECCccc--------------cchHHHHHhcc--CCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHH
Confidence            35677888764              88888888776  5999999999998877666553     468888777765544


Q ss_pred             HHhhcCCCCceeEEEEc---CCccchHHHHHHHHhcccCCeEEE
Q 022597          201 ALILNGEASSYDFAFVD---AEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD---~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      .+      .+.|+++--   ++.....-.++...+.++||++|+
T Consensus       228 ~v------~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         228 AV------KKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             Hh------hhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence            43      578887532   223334455667788999999876

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=90.91  E-value=2.9  Score=39.87  Aligned_cols=105  Identities=16%  Similarity=0.300  Sum_probs=64.5

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-  193 (294)
                      ....++++||=+|+|.+              |..+..+++..+ ..+|++++.+++..+.+++    .|..+-+....- 
T Consensus       180 ~~~~~g~~vlV~G~g~v--------------G~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~  240 (365)
T cd08277         180 AKVEPGSTVAVFGLGAV--------------GLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSD  240 (365)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEecccccc
Confidence            34456779988898764              777777888763 2379999999988776643    455322222111 


Q ss_pred             -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597          194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  245 (294)
Q Consensus       194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v  245 (294)
                       +..+.+..+.    .+.+|+||--.+.   ...+...++.++++ |.++.-..
T Consensus       241 ~~~~~~~~~~~----~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         241 KPVSEVIREMT----GGGVDYSFECTGN---ADLMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             chHHHHHHHHh----CCCCCEEEECCCC---hHHHHHHHHhcccCCCEEEEEcC
Confidence             1122233321    2468988865442   24567778889885 88876444

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=90.86  E-value=3.5  Score=38.31  Aligned_cols=85  Identities=14%  Similarity=0.110  Sum_probs=51.1

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHH
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE  225 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~  225 (294)
                      |..++.++++.  +.++++++.+++..+.+++    .|..+-+.....+..+.+..+.   ....+|++|-..+..    
T Consensus       157 G~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~---~~~~~d~vid~~g~~----  223 (324)
T cd08291         157 GRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI---AKLNATIFFDAVGGG----  223 (324)
T ss_pred             HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh---CCCCCcEEEECCCcH----
Confidence            66777777776  5789999999987776654    4554322222223323333321   134689888544432    


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 022597          226 YFELLLQLIRVGGIIVID  243 (294)
Q Consensus       226 ~~~~~~~lLkpgG~ivid  243 (294)
                      ......+.+++||.++.-
T Consensus       224 ~~~~~~~~l~~~G~~v~~  241 (324)
T cd08291         224 LTGQILLAMPYGSTLYVY  241 (324)
T ss_pred             HHHHHHHhhCCCCEEEEE
Confidence            234457788999998764

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>TIGR00518 alaDH alanine dehydrogenase

Probab=90.83  E-value=1.2  Score=43.50  Aligned_cols=97  Identities=13%  Similarity=0.111  Sum_probs=56.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+.+|+=+|+|.+              |..+...+..+  +.+|+.+|.+++..+.+.+.+   +.  .+.....+. +.
T Consensus       166 ~~~~VlViGaG~v--------------G~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~  223 (370)
T TIGR00518       166 EPGDVTIIGGGVV--------------GTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YE  223 (370)
T ss_pred             CCceEEEEcCCHH--------------HHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HH
Confidence            4567999999753              77777777766  468999999988765543322   21  122222222 22


Q ss_pred             HHHHhhcCCCCceeEEEEcCCc--cchHH-HHHHHHhcccCCeEEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEK--RMYQE-YFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~--~~~~~-~~~~~~~lLkpgG~ivi  242 (294)
                      +.+.     -..+|+||.....  ...+. +-+...+.++||++|+-
T Consensus       224 l~~~-----l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD  265 (370)
T TIGR00518       224 IEDA-----VKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD  265 (370)
T ss_pred             HHHH-----HccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence            3332     2568999876421  11122 22555677899977654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=90.40  E-value=1.8  Score=40.58  Aligned_cols=88  Identities=16%  Similarity=0.255  Sum_probs=55.2

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCC---cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~---~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++|.=||+                 |..+..++..+...   .+|+++|.+++..+.++    ..|...  .+ ..+.  
T Consensus         7 ~~I~IIG~-----------------G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g~~~--~~-~~~~--   60 (307)
T PRK07502          7 DRVALIGI-----------------GLIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELGLGD--RV-TTSA--   60 (307)
T ss_pred             cEEEEEee-----------------CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCCCCc--ee-cCCH--
Confidence            37888898                 55555555554322   38999999998776554    334321  11 1121  


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                        ...     ....|+|++-.+......+++.+.+.+++|++++
T Consensus        61 --~~~-----~~~aDvViiavp~~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         61 --AEA-----VKGADLVILCVPVGASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             --HHH-----hcCCCEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence              111     2467999998876666777777878888887553

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=90.13  E-value=3.8  Score=39.16  Aligned_cols=97  Identities=13%  Similarity=0.154  Sum_probs=59.4

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+++||-.|+|.+              |..++.+++..  +.++++++.+++...   +..++.|...  .+...+. +
T Consensus       182 ~~g~~VlV~G~G~v--------------G~~avq~Ak~~--Ga~vi~~~~~~~~~~---~~~~~~Ga~~--vi~~~~~-~  239 (360)
T PLN02586        182 EPGKHLGVAGLGGL--------------GHVAVKIGKAF--GLKVTVISSSSNKED---EAINRLGADS--FLVSTDP-E  239 (360)
T ss_pred             CCCCEEEEECCCHH--------------HHHHHHHHHHC--CCEEEEEeCCcchhh---hHHHhCCCcE--EEcCCCH-H
Confidence            35678888999765              77778888876  467888887765432   2233456432  1111111 2


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+...     .+.+|++|--.+.   ...++.+.+.|++||.++.-.
T Consensus       240 ~~~~~-----~~~~D~vid~~g~---~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        240 KMKAA-----IGTMDYIIDTVSA---VHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             HHHhh-----cCCCCEEEECCCC---HHHHHHHHHHhcCCcEEEEeC
Confidence            22222     2358998854432   235677889999999988643

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=90.11  E-value=4.3  Score=37.65  Aligned_cols=102  Identities=21%  Similarity=0.220  Sum_probs=64.1

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-  192 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-  192 (294)
                      ......+++||=.|+|.+              |..++.+++... +.++++++.+++..+.+++    .|...-+.... 
T Consensus       157 ~~~~~~g~~vlV~g~g~v--------------G~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~  217 (338)
T PRK09422        157 VSGIKPGQWIAIYGAGGL--------------GNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRV  217 (338)
T ss_pred             hcCCCCCCEEEEECCcHH--------------HHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEeccccc
Confidence            344556778988897543              777777777632 5789999999998777643    45532111111 


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+..+.+...     .+.+|.++++...   ...++.+++.|+++|.++.
T Consensus       218 ~~~~~~v~~~-----~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~  259 (338)
T PRK09422        218 EDVAKIIQEK-----TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVA  259 (338)
T ss_pred             ccHHHHHHHh-----cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEE
Confidence            1212223222     2358877777542   3567888999999999885

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=89.92  E-value=0.82  Score=46.33  Aligned_cols=70  Identities=20%  Similarity=0.389  Sum_probs=45.0

Q ss_pred             CCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEE
Q 022597          208 ASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM  281 (294)
Q Consensus       208 ~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~  281 (294)
                      ..+||+|..+.-      +-.....+-.+-+.|||||.+++.|-.                .+-+-.+.+.+.=++++.+
T Consensus       425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~----------------~vl~~v~~i~~~lrW~~~~  488 (506)
T PF03141_consen  425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV----------------DVLEKVKKIAKSLRWEVRI  488 (506)
T ss_pred             CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH----------------HHHHHHHHHHHhCcceEEE
Confidence            578999976632      233566777778999999999996541                1122233344555667766


Q ss_pred             eecCC------ceEEEEE
Q 022597          282 VPIGD------GMTICQK  293 (294)
Q Consensus       282 lp~gd------Gl~i~~k  293 (294)
                      .-.-+      ++++|+|
T Consensus       489 ~d~e~g~~~~EkiL~~~K  506 (506)
T PF03141_consen  489 HDTEDGPDGPEKILICQK  506 (506)
T ss_pred             EecCCCCCCCceEEEEEC
Confidence            66644      5778776

; GO: 0008168 methyltransferase activity

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=89.90  E-value=2.9  Score=38.92  Aligned_cols=104  Identities=23%  Similarity=0.325  Sum_probs=61.2

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      .+..++++||-.|+|.+              |...+.+++..+ ...+++++.+++..+.+++    .|...-+.....+
T Consensus       163 ~~~~~~~~VlI~g~g~v--------------g~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~  223 (347)
T cd05278         163 AGIKPGSTVAVIGAGPV--------------GLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGD  223 (347)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcch
Confidence            34445678888777532              777777787763 2478888888877665543    3432212222222


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..+.+..+.   ....+|++|-..+.   ...++..++.|+++|.++.-
T Consensus       224 ~~~~i~~~~---~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         224 IVEQILELT---GGRGVDCVIEAVGF---EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             HHHHHHHHc---CCCCCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence            223333221   23569988743322   24677788899999998853

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK08114 cystathionine beta-lyase; Provisional

Probab=89.83  E-value=5.8  Score=39.14  Aligned_cols=128  Identities=15%  Similarity=0.197  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEe-CChHHHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACE-RDARSLEVAKKYYER  181 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id-~~~~~~~~A~~~~~~  181 (294)
                      -.|....+=..++.+-++..++-+.+|+               +.....+...+.++.+|++.+ .........++.+++
T Consensus        60 ~nPt~~~le~~la~LEg~~~a~~~~SGm---------------aAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~  124 (395)
T PRK08114         60 GTLTHFSLQEAMCELEGGAGCALYPCGA---------------AAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSK  124 (395)
T ss_pred             CChhHHHHHHHHHHHhCCCeEEEEhHHH---------------HHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHh
Confidence            4566666666777777888999999977               555544444456677777654 444556677777788


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccC---CeEEEEecccCCCcc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRV---GGIIVIDNVLWHGKV  251 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkp---gG~ivid~vl~~g~v  251 (294)
                      .|+.  ++++...-.+.+++.+    ...-.+|++...-  ......++.+.++.+.   |-.+++||....|..
T Consensus       125 ~Gi~--v~~vd~~d~~~l~~~l----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~  193 (395)
T PRK08114        125 LGVT--TTWFDPLIGADIAKLI----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL  193 (395)
T ss_pred             cCcE--EEEECCCCHHHHHHhc----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc
Confidence            7763  6665432223344432    2345788887542  1122234444444443   568899998754443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=89.81  E-value=0.92  Score=42.78  Aligned_cols=98  Identities=11%  Similarity=0.046  Sum_probs=56.0

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-cchhhhHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLK  200 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-gda~~~l~  200 (294)
                      +|.=+|+|.+.             |+.+..++++   +..|+.++..++.++..++   +.|+    .+.. +.....-.
T Consensus         4 ~I~IiGaGaiG-------------~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~---~~Gl----~i~~~g~~~~~~~   60 (305)
T PRK05708          4 TWHILGAGSLG-------------SLWACRLARA---GLPVRLILRDRQRLAAYQQ---AGGL----TLVEQGQASLYAI   60 (305)
T ss_pred             eEEEECCCHHH-------------HHHHHHHHhC---CCCeEEEEechHHHHHHhh---cCCe----EEeeCCcceeecc
Confidence            78889997653             4444445443   4679999998766654433   2232    1110 10000000


Q ss_pred             HHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          201 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ........++||+||+-.--.+..+.++.+.+.+.++..++.
T Consensus        61 ~~~~~~~~~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         61 PAETADAAEPIHRLLLACKAYDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             CCCCcccccccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence            000000135899999887545567788888899999987653

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=89.80  E-value=3.8  Score=38.14  Aligned_cols=103  Identities=17%  Similarity=0.310  Sum_probs=64.5

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      .....++++||-.|+|.+              |...+.+++..  +.+++++..+++..+.+++    .|..+-+.....
T Consensus       154 ~~~l~~g~~vLI~g~g~v--------------G~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~  213 (337)
T cd08261         154 RAGVTAGDTVLVVGAGPI--------------GLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDE  213 (337)
T ss_pred             hcCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCccc
Confidence            344556778998887642              77777788876  5889999888887765533    343332233322


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +..+.+..+.   ....+|++|-..+.   ...+..+.+.|+++|.++.
T Consensus       214 ~~~~~l~~~~---~~~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~  256 (337)
T cd08261         214 DVAARLRELT---DGEGADVVIDATGN---PASMEEAVELVAHGGRVVL  256 (337)
T ss_pred             CHHHHHHHHh---CCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence            3223333321   13468998865432   2456777888999998875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=89.60  E-value=0.95  Score=41.24  Aligned_cols=61  Identities=8%  Similarity=0.118  Sum_probs=39.5

Q ss_pred             cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc------CCccchHHHHHHHHhc
Q 022597          160 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD------AEKRMYQEYFELLLQL  233 (294)
Q Consensus       160 ~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD------~~~~~~~~~~~~~~~l  233 (294)
                      -.|+.||+++..                -.+.+.|..+..   ....+.++||+|...      +.....-+.+..+.++
T Consensus        73 fdvt~IDLns~~----------------~~I~qqDFm~rp---lp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~f  133 (219)
T PF11968_consen   73 FDVTRIDLNSQH----------------PGILQQDFMERP---LPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKF  133 (219)
T ss_pred             eeeEEeecCCCC----------------CCceeeccccCC---CCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            359999999842                134455554421   111135789998533      2244567888999999


Q ss_pred             ccCCeE
Q 022597          234 IRVGGI  239 (294)
Q Consensus       234 LkpgG~  239 (294)
                      |+|+|.
T Consensus       134 L~~~g~  139 (219)
T PF11968_consen  134 LKPPGL  139 (219)
T ss_pred             hCCCCc
Confidence            999999

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=89.50  E-value=7.4  Score=38.48  Aligned_cols=97  Identities=11%  Similarity=0.231  Sum_probs=56.3

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcC------CCCceeEEEEcC
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------EASSYDFAFVDA  218 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~------~~~~fD~vfiD~  218 (294)
                      |+.+..+|..+. .+-+|+++|++++.++..    . .|.   +.+...+..+.++.....|      .....|+||+..
T Consensus        12 G~~G~~~A~~La~~G~~V~~~D~~~~~v~~l----~-~g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064         12 GYIGLPTAAAFASRQKQVIGVDINQHAVDTI----N-RGE---IHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             chhhHHHHHHHHhCCCEEEEEeCCHHHHHHH----H-CCC---CCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            666666666653 257899999999977642    2 121   2222222222222211111      113578998876


Q ss_pred             Cc----------cchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597          219 EK----------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       219 ~~----------~~~~~~~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      +.          .......+.+.+.+++|.++|.......|.
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt  125 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA  125 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence            53          234556677788899998888777655553

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=89.33  E-value=8.1  Score=35.82  Aligned_cols=108  Identities=14%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC--CCcEEEEEcchhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAAD  197 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl--~~~v~~~~gda~~  197 (294)
                      ...|+.+||                 |.-+...-...+.+.+++=+|. |+.++.-++.+++.|.  ..+.+++..|..+
T Consensus        82 ~~qvV~LGa-----------------GlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~  143 (260)
T TIGR00027        82 IRQVVILGA-----------------GLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ  143 (260)
T ss_pred             CcEEEEeCC-----------------ccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence            457999999                 6666665443333344544444 3456666667776553  4678888888764


Q ss_pred             h-HHHHhhcCC-CCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEecc
Q 022597          198 S-LKALILNGE-ASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~-l~~l~~~~~-~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      . ...+...+- .+..-+++.-+     .......+|+.+.....||+.|++|-+
T Consensus       144 ~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~  198 (260)
T TIGR00027       144 DWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV  198 (260)
T ss_pred             hHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence            3 334433221 11222232221     245567888888888889999999976

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=89.29  E-value=5.7  Score=37.19  Aligned_cols=147  Identities=18%  Similarity=0.242  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +.......+...-+..++.. |..-+                 |.. +-....+++.-++..+|+.|+-....++++.  
T Consensus        73 lpa~l~~yl~~i~~lN~~~~-l~~Yp-----------------GSP-~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--  131 (279)
T COG2961          73 LPAELEPYLDAVRQLNPGGG-LRYYP-----------------GSP-LLARQLLREQDRLVLTELHPSDAPLLRNNFA--  131 (279)
T ss_pred             chHHHHHHHHHHHHhCCCCC-cccCC-----------------CCH-HHHHHHcchhceeeeeecCccHHHHHHHHhC--
Confidence            44555556666555555444 44444                 432 2223334556799999999999999998887  


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhccc--CCeEEEEecccCCCcccCcccC
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIR--VGGIIVIDNVLWHGKVADQMVN  257 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLk--pgG~ivid~vl~~g~v~~~~~~  257 (294)
                       -..++++..+|....+......  .+.=-+|++|++   +.+|+...+.+.+.++  ++|+..    +|.-.+      
T Consensus       132 -~d~~vrv~~~DG~~~l~a~LPP--~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~ya----iWYPik------  198 (279)
T COG2961         132 -GDRRVRVLRGDGFLALKAHLPP--KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYA----IWYPIK------  198 (279)
T ss_pred             -CCcceEEEecCcHHHHhhhCCC--CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEE----EEEeec------
Confidence             3568999999998877664322  355678999997   5678888777766554  345443    232211      


Q ss_pred             CcchHHHHHHHHHhhhCC-----CeEEEEeecC
Q 022597          258 DAKTISIRNFNKNLMEDE-----RVSISMVPIG  285 (294)
Q Consensus       258 ~~~~~~ir~f~~~l~~~~-----~~~~~~lp~g  285 (294)
                        ....++.|.+.+..-.     ..+..+.|..
T Consensus       199 --~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~  229 (279)
T COG2961         199 --DRRQIRRFLRALEALGIRKILQIELAVRPDS  229 (279)
T ss_pred             --chHHHHHHHHHHhhcCccceeeeEEEecCCC
Confidence              1234677777665432     2344555653

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=89.27  E-value=1.1  Score=36.96  Aligned_cols=43  Identities=21%  Similarity=0.213  Sum_probs=28.7

Q ss_pred             EEccccccccccccccccCCCc--HHHHHHHH-HCCCCcEEEEEeCChHHHHHHHHH--HHHh
Q 022597          125 EVGVYTVCVSSYSTSILSLFSG--YSSLAIAL-VLPESGCLVACERDARSLEVAKKY--YERA  182 (294)
Q Consensus       125 EiG~g~~~~~~~~~~~~~~~aG--~~sl~la~-~~~~~~~v~~id~~~~~~~~A~~~--~~~~  182 (294)
                      |||++.               |  .....+.. ...++++|+++|.+|..++..+++  +..+
T Consensus         1 DvGA~~---------------G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANI---------------GFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TT---------------S--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCC---------------ChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            799999               9  66666643 355579999999999999999888  5544

; PDB: 2PY6_A.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.21  E-value=3  Score=41.48  Aligned_cols=89  Identities=11%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+++|+-+|+|.+              |......++..  +++|+.+|.++...+.|++    .|.    +..  +..+
T Consensus       200 l~GktVvViG~G~I--------------G~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e  253 (413)
T cd00401         200 IAGKVAVVAGYGDV--------------GKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE  253 (413)
T ss_pred             CCCCEEEEECCCHH--------------HHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH
Confidence            45789999999764              76666666665  4689999999988776654    343    111  1112


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHH-HhcccCCeEEEEec
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELL-LQLIRVGGIIVIDN  244 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~-~~lLkpgG~ivid~  244 (294)
                      .   +      ...|+||.-.+.   ...+... .+.+++||+++.-.
T Consensus       254 ~---v------~~aDVVI~atG~---~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         254 A---V------KEGDIFVTTTGN---KDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             H---H------cCCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEeC
Confidence            1   1      357988875543   3345544 78999999997543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=89.14  E-value=2.8  Score=40.81  Aligned_cols=104  Identities=25%  Similarity=0.302  Sum_probs=67.3

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-c
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-L  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-d  194 (294)
                      +..++..|.-+|||.+              |.+++.-|.... ..+++++|++++.++.|++    .|-.+-+.-... |
T Consensus       182 ~v~~G~tvaV~GlGgV--------------GlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~  242 (366)
T COG1062         182 KVEPGDTVAVFGLGGV--------------GLAAIQGAKAAG-AGRIIAVDINPEKLELAKK----FGATHFVNPKEVDD  242 (366)
T ss_pred             cCCCCCeEEEEeccHh--------------HHHHHHHHHHcC-CceEEEEeCCHHHHHHHHh----cCCceeecchhhhh
Confidence            3446678999999865              777777666654 6899999999999887765    454332222211 3


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+.+..+-    .+..|.+|.-.+.   .+.++..+..++++|..++-.+
T Consensus       243 vv~~i~~~T----~gG~d~~~e~~G~---~~~~~~al~~~~~~G~~v~iGv  286 (366)
T COG1062         243 VVEAIVELT----DGGADYAFECVGN---VEVMRQALEATHRGGTSVIIGV  286 (366)
T ss_pred             HHHHHHHhc----CCCCCEEEEccCC---HHHHHHHHHHHhcCCeEEEEec
Confidence            444444442    3478888765542   2356666777777888877554

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=88.61  E-value=7.8  Score=38.08  Aligned_cols=123  Identities=17%  Similarity=0.233  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEe-CChHHHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACE-RDARSLEVAKKYYER  181 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id-~~~~~~~~A~~~~~~  181 (294)
                      -.|....+=..++.+.++..++=..+|.               +..+..+...++++.+|+..+ +-....+..++.+.+
T Consensus        53 gnPt~~~le~~la~Le~g~~a~~~~SGm---------------aAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~  117 (386)
T PF01053_consen   53 GNPTVRALEQRLAALEGGEDALLFSSGM---------------AAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPR  117 (386)
T ss_dssp             C-HHHHHHHHHHHHHHT-SEEEEESSHH---------------HHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHH
T ss_pred             ccccHHHHHHHHHHhhcccceeeccchH---------------HHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcc
Confidence            4677777777888888888899988876               666556666677677777665 455667777788888


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCC--eEEEEeccc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVG--GIIVIDNVL  246 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpg--G~ivid~vl  246 (294)
                      .|+.  +++...+-.+.++...    ...-++||+..+  +......++.+.++.+.-  -.+++||.+
T Consensus       118 ~gv~--v~~~d~~d~~~l~~~l----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~  180 (386)
T PF01053_consen  118 FGVE--VTFVDPTDLEALEAAL----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTF  180 (386)
T ss_dssp             TTSE--EEEESTTSHHHHHHHH----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTT
T ss_pred             cCcE--EEEeCchhHHHHHhhc----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccc
Confidence            7764  5665443334444433    458899998765  222344455555555554  477888876

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=88.52  E-value=4.2  Score=35.15  Aligned_cols=100  Identities=18%  Similarity=0.227  Sum_probs=54.2

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      -|+|+|-|.               |-.==.+-..+| +-+|+.+|.--....-.        ..+.-.++.||+.+.++.
T Consensus        31 ~VlElGLGN---------------GRTydHLRe~~p-~R~I~vfDR~l~~hp~~--------~P~~~~~ilGdi~~tl~~   86 (160)
T PF12692_consen   31 PVLELGLGN---------------GRTYDHLREIFP-DRRIYVFDRALACHPSS--------TPPEEDLILGDIRETLPA   86 (160)
T ss_dssp             -EEEE--TT---------------SHHHHHHHHH---SS-EEEEESS--S-GGG-----------GGGEEES-HHHHHHH
T ss_pred             ceEEeccCC---------------CccHHHHHHhCC-CCeEEEEeeecccCCCC--------CCchHheeeccHHHHhHH
Confidence            699999999               987777878777 78999999854432111        122346889999999887


Q ss_pred             HhhcCCCCceeEEEEcCC---ccc----hHHHHHHHHhcccCCeEEEEecccC
Q 022597          202 LILNGEASSYDFAFVDAE---KRM----YQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       202 l~~~~~~~~fD~vfiD~~---~~~----~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      +...  ..+.-++-.|-+   ++.    ....-..+.++|.|||++|-+.-+.
T Consensus        87 ~~~~--g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~  137 (160)
T PF12692_consen   87 LARF--GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY  137 (160)
T ss_dssp             HHHH---S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred             HHhc--CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence            4322  345556666644   211    1222234457999999999876654

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=88.39  E-value=4.9  Score=38.25  Aligned_cols=103  Identities=16%  Similarity=0.221  Sum_probs=62.9

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ....++++||-.|+|.+              |..++.++++.+ ...+++++.+++..+.+++    .|...-+.....+
T Consensus       182 ~~~~~g~~vlI~g~g~v--------------G~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~  242 (365)
T cd08278         182 LKPRPGSSIAVFGAGAV--------------GLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEED  242 (365)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcC
Confidence            34456678888888653              777777888764 2369999999987766543    4442111111112


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..+.+..+.    ...+|+++--.+..   ..+..+.+.|+++|.++.-
T Consensus       243 ~~~~v~~~~----~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         243 LVAAIREIT----GGGVDYALDTTGVP---AVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             HHHHHHHHh----CCCCcEEEECCCCc---HHHHHHHHHhccCCEEEEe
Confidence            222233321    34699887654322   3567788899999998863

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=88.08  E-value=5.3  Score=37.38  Aligned_cols=104  Identities=19%  Similarity=0.301  Sum_probs=62.6

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      .....+++++|-.|+|.+              |..++.+++..  +.+ +++++.+++..+.+++    .|...-+....
T Consensus       157 ~~~~~~g~~vlI~g~g~v--------------G~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~  216 (343)
T cd05285         157 RAGVRPGDTVLVFGAGPI--------------GLLTAAVAKAF--GATKVVVTDIDPSRLEFAKE----LGATHTVNVRT  216 (343)
T ss_pred             hcCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCcEEecccc
Confidence            344556778877787653              77778888876  455 8889888887766644    24432222221


Q ss_pred             cch---hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          193 GLA---ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       193 gda---~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+.   .+.+....   ....+|+||--.+..   ..+...++.|+++|.++.-
T Consensus       217 ~~~~~~~~~~~~~~---~~~~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         217 EDTPESAEKIAELL---GGKGPDVVIECTGAE---SCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             ccchhHHHHHHHHh---CCCCCCEEEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence            121   12222221   134599888654421   2566778899999998853

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=88.05  E-value=3.1  Score=41.09  Aligned_cols=74  Identities=22%  Similarity=0.181  Sum_probs=49.8

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh--
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--  198 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~--  198 (294)
                      ++||-||||.|              |....+.+.... +.+|+..|.+++.++.+.....     .+++...-|+.+.  
T Consensus         2 ~~ilviGaG~V--------------g~~va~~la~~~-d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~a   61 (389)
T COG1748           2 MKILVIGAGGV--------------GSVVAHKLAQNG-DGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDA   61 (389)
T ss_pred             CcEEEECCchh--------------HHHHHHHHHhCC-CceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHH
Confidence            47999999765              655555544433 4899999999998876655432     1677777777653  


Q ss_pred             HHHHhhcCCCCceeEEEEcCC
Q 022597          199 LKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      +.+++     ..+|+|+.-.+
T Consensus        62 l~~li-----~~~d~VIn~~p   77 (389)
T COG1748          62 LVALI-----KDFDLVINAAP   77 (389)
T ss_pred             HHHHH-----hcCCEEEEeCC
Confidence            44453     45698876554

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=88.04  E-value=3.2  Score=35.16  Aligned_cols=87  Identities=18%  Similarity=0.262  Sum_probs=53.4

Q ss_pred             cHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHH------hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC
Q 022597          146 GYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYER------AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  218 (294)
Q Consensus       146 G~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~------~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~  218 (294)
                      |..+.++|..+.. +-+|+....+++.++..++.-..      ..+..++.+ ..|..+.+         ...|+|++-.
T Consensus         8 G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---------~~ad~Iiiav   77 (157)
T PF01210_consen    8 GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---------EDADIIIIAV   77 (157)
T ss_dssp             SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---------TT-SEEEE-S
T ss_pred             CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---------CcccEEEecc
Confidence            4444555554432 45899999999887766553221      111234544 33443332         4579999998


Q ss_pred             CccchHHHHHHHHhcccCCeEEEE
Q 022597          219 EKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       219 ~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +.....++++.+.+.++++-.++.
T Consensus        78 Ps~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   78 PSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             -GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             cHHHHHHHHHHHhhccCCCCEEEE
Confidence            888889999999999988877764

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=88.03  E-value=3.8  Score=35.70  Aligned_cols=74  Identities=20%  Similarity=0.245  Sum_probs=47.6

Q ss_pred             CcEEEEEeCChHHHHHHHHHHHHh-------C-CC--------CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--c
Q 022597          159 SGCLVACERDARSLEVAKKYYERA-------G-VS--------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--K  220 (294)
Q Consensus       159 ~~~v~~id~~~~~~~~A~~~~~~~-------g-l~--------~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~  220 (294)
                      +.+|+.+|.+++.++.+++.+++.       | +.        .++++. .|..+.          ...|+|+.-..  .
T Consensus        22 G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~dl~~~----------~~adlViEai~E~l   90 (180)
T PF02737_consen   22 GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-TDLEEA----------VDADLVIEAIPEDL   90 (180)
T ss_dssp             TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-SSGGGG----------CTESEEEE-S-SSH
T ss_pred             CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-cCHHHH----------hhhheehhhccccH
Confidence            689999999999999888887751       1 11        234432 233221          37899987654  3


Q ss_pred             cchHHHHHHHHhcccCCeEEEEe
Q 022597          221 RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       221 ~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +--.++|..+.+.+.|+.+|.-.
T Consensus        91 ~~K~~~~~~l~~~~~~~~ilasn  113 (180)
T PF02737_consen   91 ELKQELFAELDEICPPDTILASN  113 (180)
T ss_dssp             HHHHHHHHHHHCCS-TTSEEEE-
T ss_pred             HHHHHHHHHHHHHhCCCceEEec
Confidence            33578999999999888877653

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=88.02  E-value=3.3  Score=38.42  Aligned_cols=98  Identities=21%  Similarity=0.283  Sum_probs=62.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC----Cc----EEEEEeCChHHHHHHHHHHHHhCCCCcEEE
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE----SG----CLVACERDARSLEVAKKYYERAGVSHKVKI  190 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~----~~----~v~~id~~~~~~~~A~~~~~~~gl~~~v~~  190 (294)
                      +.+|++|+....               |.++..+.+.+-.    .+    ++++||+.+-           +.+. .|.-
T Consensus        41 gv~rvVDLCAAP---------------GSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~-GV~q   93 (294)
T KOG1099|consen   41 GVKRVVDLCAAP---------------GSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIE-GVIQ   93 (294)
T ss_pred             hhhHHhhhhcCC---------------CcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccC-ceEE
Confidence            345899999999               9998888887622    22    3999999763           2233 3666


Q ss_pred             EEcchhh--hHHHHhhcCCCCceeEEEEcCCc-----cchHHHH---------HHHHhcccCCeEEEEe
Q 022597          191 KHGLAAD--SLKALILNGEASSYDFAFVDAEK-----RMYQEYF---------ELLLQLIRVGGIIVID  243 (294)
Q Consensus       191 ~~gda~~--~l~~l~~~~~~~~fD~vfiD~~~-----~~~~~~~---------~~~~~lLkpgG~ivid  243 (294)
                      +++|...  .++..+..-..++.|+|+.|+.+     .+..+|+         ......|+|||.+|.-
T Consensus        94 lq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen   94 LQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             eecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            6777643  22333332235799999999652     2223322         2223679999999864

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=88.02  E-value=0.66  Score=45.64  Aligned_cols=98  Identities=22%  Similarity=0.259  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.....-+.++++....+.+|+|+.|..               |..|..++..++..+++.++|.+++..+..++.++.
T Consensus       196 ilqd~asclpA~ll~p~~g~~v~d~caap---------------g~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~  260 (413)
T KOG2360|consen  196 ILQDKASCLPAHLLDPRPGSRVIDTCAAP---------------GNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKI  260 (413)
T ss_pred             EEechhhcchhhhcCCCCCCceeeecccc---------------ccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHH
Confidence            34444445566677777778999999999               999999999998889999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      +|.+ .++...+|.... ... .  .-.....|++|+.
T Consensus       261 ag~~-~~~~~~~df~~t-~~~-~--~~~~v~~iL~Dps  293 (413)
T KOG2360|consen  261 AGVS-IVESVEGDFLNT-ATP-E--KFRDVTYILVDPS  293 (413)
T ss_pred             cCCC-ccccccccccCC-CCc-c--cccceeEEEeCCC
Confidence            9987 477778887653 110 0  0234455677754

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=87.99  E-value=2.4  Score=32.24  Aligned_cols=79  Identities=14%  Similarity=0.175  Sum_probs=51.3

Q ss_pred             cHHHHHHHHHCCC-C---cEEE-EEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc
Q 022597          146 GYSSLAIALVLPE-S---GCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK  220 (294)
Q Consensus       146 G~~sl~la~~~~~-~---~~v~-~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~  220 (294)
                      |..+..+++.+-. +   .+|+ .++.+++..+...+   +.+    +.+...+..+.+         +..|+||+-.++
T Consensus         8 G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~---~~~----~~~~~~~~~~~~---------~~advvilav~p   71 (96)
T PF03807_consen    8 GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAK---EYG----VQATADDNEEAA---------QEADVVILAVKP   71 (96)
T ss_dssp             SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHH---HCT----TEEESEEHHHHH---------HHTSEEEE-S-G
T ss_pred             CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHH---hhc----cccccCChHHhh---------ccCCEEEEEECH
Confidence            6677777666532 3   5888 55999987655443   333    344443555554         347999999999


Q ss_pred             cchHHHHHHHHhcccCCeEEE
Q 022597          221 RMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       221 ~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      ....+.++.+ ..+.++.+++
T Consensus        72 ~~~~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   72 QQLPEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             GGHHHHHHHH-HHHHTTSEEE
T ss_pred             HHHHHHHHHH-hhccCCCEEE
Confidence            9999999988 6666766654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=87.98  E-value=0.82  Score=44.16  Aligned_cols=74  Identities=22%  Similarity=0.225  Sum_probs=51.3

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH-HHHhhcCCCCceeEEEEcCC
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL-KALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l-~~l~~~~~~~~fD~vfiD~~  219 (294)
                      |.+.++-+.... .+-..+++|++...++.|++++.++++++++++++....+.+ ........+..|||+..+++
T Consensus       112 gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPP  187 (419)
T KOG2912|consen  112 GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPP  187 (419)
T ss_pred             chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCc
Confidence            555566554432 346788999999999999999999999999999988664432 22111111345888877654

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=87.71  E-value=1.8  Score=40.19  Aligned_cols=79  Identities=20%  Similarity=0.349  Sum_probs=56.8

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh-CCCCcEEEEEcchhh-h
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD-S  198 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~-gl~~~v~~~~gda~~-~  198 (294)
                      +.||||+|.-|                 ++=..... .+-+.+|.|+|+..++.|+.++..+ +++..++++...-.+ +
T Consensus        81 ~~LDIGvGAnC-----------------IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~i  143 (292)
T COG3129          81 RILDIGVGANC-----------------IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAI  143 (292)
T ss_pred             EEEeeccCccc-----------------ccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccc
Confidence            89999996522                 22222222 2578999999999999999999988 888889888765444 3


Q ss_pred             HHHHhhcCCCCceeEEEEcCC
Q 022597          199 LKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      ++..+.  -.+.||+...+++
T Consensus       144 f~giig--~nE~yd~tlCNPP  162 (292)
T COG3129         144 FNGIIG--KNERYDATLCNPP  162 (292)
T ss_pred             cccccc--ccceeeeEecCCC
Confidence            333321  2578999998876

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=87.70  E-value=6.5  Score=36.66  Aligned_cols=100  Identities=20%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-cc
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-gd  194 (294)
                      ....+++|+=.|+|.+              |.....+++..  +.++++++.+++..+.++    ..|..+-+.... .+
T Consensus       162 ~~~~~~~vlV~g~g~v--------------g~~~~~~a~~~--G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~  221 (345)
T cd08260         162 RVKPGEWVAVHGCGGV--------------GLSAVMIASAL--GARVIAVDIDDDKLELAR----ELGAVATVNASEVED  221 (345)
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCeEEEEeCCHHHHHHHH----HhCCCEEEccccchh
Confidence            3445678888897542              77777777776  578999999988776663    346532222222 22


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ....+..+   . .+.+|++|--.+.   ...+..+.+.|+++|.++.
T Consensus       222 ~~~~~~~~---~-~~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~  262 (345)
T cd08260         222 VAAAVRDL---T-GGGAHVSVDALGI---PETCRNSVASLRKRGRHVQ  262 (345)
T ss_pred             HHHHHHHH---h-CCCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEE
Confidence            22223222   1 2379988854332   2456677889999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.69  E-value=6.3  Score=36.39  Aligned_cols=85  Identities=14%  Similarity=0.138  Sum_probs=51.8

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHH-------HhCC-C--------CcEEEEEcchhhhHHHHhhcCCC
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYE-------RAGV-S--------HKVKIKHGLAADSLKALILNGEA  208 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~-------~~gl-~--------~~v~~~~gda~~~l~~l~~~~~~  208 (294)
                      |..+..++..+. .+..|+.+|.+++.++.+++.++       +.|. .        .++++. .|..    .      .
T Consensus        12 G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~~----~------~   80 (282)
T PRK05808         12 GTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDLD----D------L   80 (282)
T ss_pred             CHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHH----H------h
Confidence            555555555442 24589999999999876664332       2231 1        123322 2221    1      2


Q ss_pred             CceeEEEEcCCccc--hHHHHHHHHhcccCCeEEE
Q 022597          209 SSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       209 ~~fD~vfiD~~~~~--~~~~~~~~~~lLkpgG~iv  241 (294)
                      ...|+||+-.+...  -.++|+.+.+.++|+.+++
T Consensus        81 ~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~  115 (282)
T PRK05808         81 KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA  115 (282)
T ss_pred             ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence            56799998875332  3688999989999987773

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=87.66  E-value=7.4  Score=36.29  Aligned_cols=102  Identities=25%  Similarity=0.351  Sum_probs=61.7

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.++|=.|+|.+              |..++.+++..+ ..++++++.+++..+.++    ..|...-+.....+.
T Consensus       163 ~~~~g~~vlI~g~g~~--------------g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~  223 (345)
T cd08286         163 KVKPGDTVAIVGAGPV--------------GLAALLTAQLYS-PSKIIMVDLDDNRLEVAK----KLGATHTVNSAKGDA  223 (345)
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCCceeccccccH
Confidence            3445667777787542              666666777653 267888999887766555    345543333333333


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ...+..+.   ....+|.+|--.+.   ...++.+.+.|+++|.++.
T Consensus       224 ~~~i~~~~---~~~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~  264 (345)
T cd08286         224 IEQVLELT---DGRGVDVVIEAVGI---PATFELCQELVAPGGHIAN  264 (345)
T ss_pred             HHHHHHHh---CCCCCCEEEECCCC---HHHHHHHHHhccCCcEEEE
Confidence            22232221   13469988744331   2356778899999999885

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=87.10  E-value=5.4  Score=37.82  Aligned_cols=99  Identities=24%  Similarity=0.360  Sum_probs=59.5

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      .++++||-.|+|.+              |..+..+++..  +.+ +++++.+++..+.++    ..|...-+.....+..
T Consensus       186 ~~g~~VlI~g~g~v--------------G~~~~~lak~~--G~~~vi~~~~s~~~~~~~~----~~g~~~v~~~~~~~~~  245 (367)
T cd08263         186 RPGETVAVIGVGGV--------------GSSAIQLAKAF--GASPIIAVDVRDEKLAKAK----ELGATHTVNAAKEDAV  245 (367)
T ss_pred             CCCCEEEEECCcHH--------------HHHHHHHHHHc--CCCeEEEEeCCHHHHHHHH----HhCCceEecCCcccHH
Confidence            45667877777642              77777778776  355 888998888766553    3454321222122222


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +.+....   ....+|+|+--.+..   ...+.+++.|+++|.++.
T Consensus       246 ~~l~~~~---~~~~~d~vld~vg~~---~~~~~~~~~l~~~G~~v~  285 (367)
T cd08263         246 AAIREIT---GGRGVDVVVEALGKP---ETFKLALDVVRDGGRAVV  285 (367)
T ss_pred             HHHHHHh---CCCCCCEEEEeCCCH---HHHHHHHHHHhcCCEEEE
Confidence            2232221   235699988543322   356778899999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.99  E-value=13  Score=32.51  Aligned_cols=82  Identities=16%  Similarity=0.152  Sum_probs=50.0

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+++++-.|++                |..+..+++.+ ..+.+|++++.+++..+.+.+.....   .++.++.+|..+
T Consensus         4 ~~~~vlItGa~----------------g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~   64 (238)
T PRK05786          4 KGKKVAIIGVS----------------EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSS   64 (238)
T ss_pred             CCcEEEEECCC----------------chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCC
Confidence            35689999885                55666666655 34679999999988766554444432   257778887654


Q ss_pred             h--HHHHhhcC--CCCceeEEEEcCC
Q 022597          198 S--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       198 ~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .  +..+.+..  ..+.+|.++..+.
T Consensus        65 ~~~~~~~~~~~~~~~~~id~ii~~ag   90 (238)
T PRK05786         65 TESARNVIEKAAKVLNAIDGLVVTVG   90 (238)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence            2  22211110  1246788877654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=86.90  E-value=19  Score=36.45  Aligned_cols=95  Identities=11%  Similarity=0.134  Sum_probs=54.4

Q ss_pred             cHHHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHH---HHhCCC--------CcEEEEEcchhhhHHHHhhcCCCCce
Q 022597          146 GYSSLAIALVLPE---SGCLVACERDARSLEVAKKYY---ERAGVS--------HKVKIKHGLAADSLKALILNGEASSY  211 (294)
Q Consensus       146 G~~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~---~~~gl~--------~~v~~~~gda~~~l~~l~~~~~~~~f  211 (294)
                      ||.++.++..+..   +.+|+++|.+++.++..++-.   .+.|+.        .+.++. .|..+.         -...
T Consensus        10 GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~---------i~~a   79 (473)
T PLN02353         10 GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKH---------VAEA   79 (473)
T ss_pred             CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHH---------HhcC
Confidence            6677766665542   467999999999877644321   000110        112221 111111         1346


Q ss_pred             eEEEEcCC--c---------c----chHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597          212 DFAFVDAE--K---------R----MYQEYFELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       212 D~vfiD~~--~---------~----~~~~~~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      |++|+-.+  .         .    ......+.+.+.|++|-++++......|.
T Consensus        80 dvi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt  133 (473)
T PLN02353         80 DIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT  133 (473)
T ss_pred             CEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence            77776432  1         1    24556666678899999999888877775

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=86.77  E-value=0.74  Score=43.58  Aligned_cols=103  Identities=20%  Similarity=0.192  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597          105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV  184 (294)
Q Consensus       105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl  184 (294)
                      |.+.+++...-   .+..++|+|||.               |-..    . ..+.+.++++|++...+..+++    .| 
T Consensus        34 p~v~qfl~~~~---~gsv~~d~gCGn---------------gky~----~-~~p~~~~ig~D~c~~l~~~ak~----~~-   85 (293)
T KOG1331|consen   34 PMVRQFLDSQP---TGSVGLDVGCGN---------------GKYL----G-VNPLCLIIGCDLCTGLLGGAKR----SG-   85 (293)
T ss_pred             HHHHHHHhccC---CcceeeecccCC---------------cccC----c-CCCcceeeecchhhhhcccccc----CC-
Confidence            44444444432   356899999998               5211    1 1146789999999987766553    12 


Q ss_pred             CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc----CC--ccchHHHHHHHHhcccCCeEEEEe
Q 022597          185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVD----AE--KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD----~~--~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                        ...+..+|+.....      ...+||.++.-    +.  .......++.+.+.|+|||-+.+-
T Consensus        86 --~~~~~~ad~l~~p~------~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen   86 --GDNVCRADALKLPF------REESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             --CceeehhhhhcCCC------CCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence              22455566654422      25789988533    22  344577889999999999997764

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=86.74  E-value=8.5  Score=36.61  Aligned_cols=103  Identities=18%  Similarity=0.276  Sum_probs=61.9

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-  193 (294)
                      ..+.++++||=.|+|.+              |..+..+++..+ ...+++++.+++..+.++    +.|...-+..... 
T Consensus       179 ~~~~~g~~vlI~g~g~v--------------G~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~  239 (365)
T cd05279         179 AKVTPGSTCAVFGLGGV--------------GLSVIMGCKAAG-ASRIIAVDINKDKFEKAK----QLGATECINPRDQD  239 (365)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HhCCCeeccccccc
Confidence            34456678888888653              666667777663 235888898888776664    3455332222222 


Q ss_pred             -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhccc-CCeEEEEe
Q 022597          194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIR-VGGIIVID  243 (294)
Q Consensus       194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLk-pgG~ivid  243 (294)
                       +..+.+..+.    .+.+|.++--.+.   ...+....+.|+ ++|.++.-
T Consensus       240 ~~~~~~l~~~~----~~~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~  284 (365)
T cd05279         240 KPIVEVLTEMT----DGGVDYAFEVIGS---ADTLKQALDATRLGGGTSVVV  284 (365)
T ss_pred             chHHHHHHHHh----CCCCcEEEECCCC---HHHHHHHHHHhccCCCEEEEE
Confidence             2222222221    2469998854432   345667788899 99998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=86.62  E-value=7.7  Score=35.34  Aligned_cols=102  Identities=17%  Similarity=0.191  Sum_probs=58.5

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ....+++++-.|.+.++             |.....++...  +.+++.++.+++..+.++.    .+....+..  .+ 
T Consensus       163 ~~~~~~~vlI~g~~~~i-------------G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~--~~-  220 (342)
T cd08266         163 RLRPGETVLVHGAGSGV-------------GSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDY--RK-  220 (342)
T ss_pred             CCCCCCEEEEECCCchH-------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEec--CC-
Confidence            34456788888886522             55555555554  5789999998887665533    343221221  11 


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+....+........+|.++...+.    ..++.+.+.++++|.++.-
T Consensus       221 ~~~~~~~~~~~~~~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~  264 (342)
T cd08266         221 EDFVREVRELTGKRGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC  264 (342)
T ss_pred             hHHHHHHHHHhCCCCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence            1222222211123468998866543    3456667888999988753

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=86.59  E-value=4.7  Score=37.50  Aligned_cols=93  Identities=17%  Similarity=0.160  Sum_probs=56.7

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh--CCC------------
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA--GVS------------  185 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~--gl~------------  185 (294)
                      ++|.=||+|                 ..+..++..+. .+..|+.+|.+++.++.+++.+++.  ++.            
T Consensus         4 ~~I~ViGaG-----------------~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~   66 (291)
T PRK06035          4 KVIGVVGSG-----------------VMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDE   66 (291)
T ss_pred             cEEEEECcc-----------------HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHH
Confidence            367788884                 45555554442 2568999999999998877655432  111            


Q ss_pred             -----CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc--hHHHHHHHHhcccCCeEEE
Q 022597          186 -----HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       186 -----~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~--~~~~~~~~~~lLkpgG~iv  241 (294)
                           .+++.. .+.    ..      -...|+||.-.+...  ..++|+.+.+.++++.+++
T Consensus        67 ~~~~~~~i~~~-~~~----~~------~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~  118 (291)
T PRK06035         67 AKAIMARIRTS-TSY----ES------LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA  118 (291)
T ss_pred             HHHHHhCcEee-CCH----HH------hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence                 112221 111    11      145799988765332  5778888888888887654

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=86.53  E-value=6.7  Score=36.58  Aligned_cols=99  Identities=16%  Similarity=0.172  Sum_probs=61.7

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ....+++||=.|+|.+              |.....++++.  +.+++.++.+++..+.++    +.|..+-+.....+.
T Consensus       160 ~~~~~~~vlV~g~g~i--------------G~~~~~~a~~~--G~~vi~~~~~~~~~~~~~----~~g~~~~i~~~~~~~  219 (333)
T cd08296         160 GAKPGDLVAVQGIGGL--------------GHLAVQYAAKM--GFRTVAISRGSDKADLAR----KLGAHHYIDTSKEDV  219 (333)
T ss_pred             CCCCCCEEEEECCcHH--------------HHHHHHHHHHC--CCeEEEEeCChHHHHHHH----HcCCcEEecCCCccH
Confidence            4556678998997653              77777778776  468999999988776664    345432122211122


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+.+..+      ..+|.++...+   ....++.+.+.|+++|.++.-
T Consensus       220 ~~~~~~~------~~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~~  258 (333)
T cd08296         220 AEALQEL------GGAKLILATAP---NAKAISALVGGLAPRGKLLIL  258 (333)
T ss_pred             HHHHHhc------CCCCEEEECCC---chHHHHHHHHHcccCCEEEEE
Confidence            2222221      35898874322   234677788999999998853

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=86.41  E-value=7.8  Score=38.56  Aligned_cols=91  Identities=16%  Similarity=0.254  Sum_probs=55.5

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH-----------HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEE
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----------ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA  214 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~-----------~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~v  214 (294)
                      |+.++.++..+..+-.|+++|++++.++..++-.           ...|   +..+. .+. +.         ....|++
T Consensus        15 GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g---~l~~t-~~~-~~---------~~~advv   80 (425)
T PRK15182         15 GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR---YLKFT-SEI-EK---------IKECNFY   80 (425)
T ss_pred             CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC---CeeEE-eCH-HH---------HcCCCEE
Confidence            8888888888766679999999999877654111           0111   11221 111 11         1457888


Q ss_pred             EEcCCc-------cchHHH---HHHHHhcccCCeEEEEecccCCCc
Q 022597          215 FVDAEK-------RMYQEY---FELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       215 fiD~~~-------~~~~~~---~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      |+-.+.       .+....   .+.+.+.|++|.++|.......|.
T Consensus        81 ii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgt  126 (425)
T PRK15182         81 IITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGC  126 (425)
T ss_pred             EEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence            875442       222222   345668899999888877766664

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=86.31  E-value=3.9  Score=37.88  Aligned_cols=78  Identities=14%  Similarity=0.100  Sum_probs=49.0

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchH
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ  224 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~  224 (294)
                      |..+..++..+. .+.+|+++|.+++..+.+.+    .|..   .....+.    ..      ....|+||+-.+.....
T Consensus         9 G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~----~g~~---~~~~~~~----~~------~~~aDlVilavp~~~~~   71 (279)
T PRK07417          9 GLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE----RGLV---DEASTDL----SL------LKDCDLVILALPIGLLL   71 (279)
T ss_pred             cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CCCc---ccccCCH----hH------hcCCCEEEEcCCHHHHH
Confidence            555556665553 24689999999987766543    2321   1111111    11      24679999988877777


Q ss_pred             HHHHHHHhcccCCeEE
Q 022597          225 EYFELLLQLIRVGGII  240 (294)
Q Consensus       225 ~~~~~~~~lLkpgG~i  240 (294)
                      +.++.+.+.++++.++
T Consensus        72 ~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         72 PPSEQLIPALPPEAIV   87 (279)
T ss_pred             HHHHHHHHhCCCCcEE
Confidence            7888888888776433

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=86.12  E-value=5.9  Score=38.28  Aligned_cols=96  Identities=17%  Similarity=0.213  Sum_probs=59.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHH-HHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~-~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++++|+-.|+|.+              |..++.+|++.  +.++++++.+++. .+.    .++.|...-+.  ..+. +
T Consensus       178 ~g~~VlV~G~G~v--------------G~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~----a~~lGa~~~i~--~~~~-~  234 (375)
T PLN02178        178 SGKRLGVNGLGGL--------------GHIAVKIGKAF--GLRVTVISRSSEKEREA----IDRLGADSFLV--TTDS-Q  234 (375)
T ss_pred             CCCEEEEEcccHH--------------HHHHHHHHHHc--CCeEEEEeCChHHhHHH----HHhCCCcEEEc--CcCH-H
Confidence            5678888898764              77777888876  4689999887653 333    34456532111  1121 2


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+...     .+.+|++|--.+.   ...++.+.+.+++||.++.-.+
T Consensus       235 ~v~~~-----~~~~D~vid~~G~---~~~~~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        235 KMKEA-----VGTMDFIIDTVSA---EHALLPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             HHHHh-----hCCCcEEEECCCc---HHHHHHHHHhhcCCCEEEEEcc
Confidence            22222     1358988865442   2356677889999999986443

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=85.94  E-value=11  Score=35.55  Aligned_cols=97  Identities=13%  Similarity=0.104  Sum_probs=55.0

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC--CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~--~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ..+++|+-+|+|.                 .+..++..+.  ....|+.++.+++..+.   ..++.|.    .+.  +.
T Consensus       176 l~~~~V~ViGaG~-----------------iG~~~a~~L~~~g~~~V~v~~r~~~ra~~---la~~~g~----~~~--~~  229 (311)
T cd05213         176 LKGKKVLVIGAGE-----------------MGELAAKHLAAKGVAEITIANRTYERAEE---LAKELGG----NAV--PL  229 (311)
T ss_pred             ccCCEEEEECcHH-----------------HHHHHHHHHHHcCCCEEEEEeCCHHHHHH---HHHHcCC----eEE--eH
Confidence            3578999999954                 4444444332  23579999999875432   2233332    222  12


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+ +...     -..+|+||.-.+.+.+...++.+......++.+++|-..
T Consensus       230 ~~-~~~~-----l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         230 DE-LLEL-----LNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             HH-HHHH-----HhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence            22 2222     145899998876555544455554444446788887654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=85.87  E-value=9.2  Score=37.57  Aligned_cols=95  Identities=13%  Similarity=0.204  Sum_probs=54.2

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH---hCCC-----CcEEEEEc-chhhhHHHHhhcCCCCceeEEEE
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGVS-----HKVKIKHG-LAADSLKALILNGEASSYDFAFV  216 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~---~gl~-----~~v~~~~g-da~~~l~~l~~~~~~~~fD~vfi  216 (294)
                      |+.++.++..+..+-.|+++|++++.++.+++....   .++.     .+.++... +..+.         ....|+||+
T Consensus         9 GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~---------~~~ad~vii   79 (388)
T PRK15057          9 GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA---------YRDADYVII   79 (388)
T ss_pred             CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh---------hcCCCEEEE
Confidence            677776666554457899999999998877652110   0000     11222211 11111         245688887


Q ss_pred             cCCcc-----------chHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597          217 DAEKR-----------MYQEYFELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       217 D~~~~-----------~~~~~~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      ..+.+           ......+.+.+ +++|.++|.......|.
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgt  123 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGF  123 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCch
Confidence            65421           22344555666 68888888877766664

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=85.55  E-value=12  Score=34.94  Aligned_cols=101  Identities=17%  Similarity=0.230  Sum_probs=59.8

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ..++++++-.|+|.+              |..+..+++..  +.+ |++++.+++..+.++    +.|...-+.....+.
T Consensus       159 ~~~g~~vlI~~~g~v--------------g~~a~~la~~~--G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~  218 (340)
T TIGR00692       159 PISGKSVLVTGAGPI--------------GLMAIAVAKAS--GAYPVIVSDPNEYRLELAK----KMGATYVVNPFKEDV  218 (340)
T ss_pred             CCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHHH----HhCCcEEEcccccCH
Confidence            345667766777542              77777777776  455 888888877665544    345432222222233


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+.+..+.   ....+|++|-..+.   ...++.+.+.|+++|.++.-
T Consensus       219 ~~~l~~~~---~~~~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       219 VKEVADLT---DGEGVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             HHHHHHhc---CCCCCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence            33333321   13568998865432   24567778899999988764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=85.51  E-value=14  Score=33.35  Aligned_cols=99  Identities=21%  Similarity=0.311  Sum_probs=61.3

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ....+++||-.|+...+             |..+..+++..  +.+|+++..+++..+.++    ..|... +-....+.
T Consensus       139 ~~~~g~~vlV~ga~g~~-------------g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~-~~~~~~~~  198 (320)
T cd08243         139 GLQPGDTLLIRGGTSSV-------------GLAALKLAKAL--GATVTATTRSPERAALLK----ELGADE-VVIDDGAI  198 (320)
T ss_pred             CCCCCCEEEEEcCCChH-------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCcE-EEecCccH
Confidence            34556788888874322             77777777776  578999999888765553    355532 21111222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+.+..+     ...+|+++-....    ..++.+.+.|+++|.++.-
T Consensus       199 ~~~i~~~-----~~~~d~vl~~~~~----~~~~~~~~~l~~~g~~v~~  237 (320)
T cd08243         199 AEQLRAA-----PGGFDKVLELVGT----ATLKDSLRHLRPGGIVCMT  237 (320)
T ss_pred             HHHHHHh-----CCCceEEEECCCh----HHHHHHHHHhccCCEEEEE
Confidence            2222222     3569998854432    3567778999999998753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK10083 putative oxidoreductase; Provisional

Probab=85.38  E-value=9.7  Score=35.33  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=58.8

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      .....+++|+=.|+|.+              |..++.++++.-....+++++.+++..+.+++    .|...-+.....+
T Consensus       156 ~~~~~g~~vlI~g~g~v--------------G~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~  217 (339)
T PRK10083        156 TGPTEQDVALIYGAGPV--------------GLTIVQVLKGVYNVKAVIVADRIDERLALAKE----SGADWVINNAQEP  217 (339)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH----hCCcEEecCcccc
Confidence            34556778988997643              66666677753113358889998887766553    4553222222212


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ..   +.+...  ...+|.+|--.+.   ...+...++.|+++|.++.
T Consensus       218 ~~---~~~~~~--g~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~  257 (339)
T PRK10083        218 LG---EALEEK--GIKPTLIIDAACH---PSILEEAVTLASPAARIVL  257 (339)
T ss_pred             HH---HHHhcC--CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEE
Confidence            22   222111  1235666643332   2356677889999999886

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=85.37  E-value=9.6  Score=35.36  Aligned_cols=94  Identities=13%  Similarity=0.162  Sum_probs=57.1

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh--------CCC------
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA--------GVS------  185 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~--------gl~------  185 (294)
                      ++|-=||+|+                 .+..++..+. .+.+|+.+|.+++.++.+++.+++.        ++.      
T Consensus         4 ~kIaViGaG~-----------------mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (287)
T PRK08293          4 KNVTVAGAGV-----------------LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAE   66 (287)
T ss_pred             cEEEEECCCH-----------------HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHH
Confidence            3677788854                 4444444432 2568999999999988887664321        111      


Q ss_pred             ---CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEE
Q 022597          186 ---HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       186 ---~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~iv  241 (294)
                         .++++. .|..+.         ....|+||.-.+.  .....+|+.+.+.++++.+|+
T Consensus        67 ~~~~~i~~~-~d~~~a---------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~  117 (287)
T PRK08293         67 AALNRITLT-TDLAEA---------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA  117 (287)
T ss_pred             HHHcCeEEe-CCHHHH---------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence               233332 222221         2457999887652  245677888888887776553

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=85.15  E-value=13  Score=35.30  Aligned_cols=98  Identities=19%  Similarity=0.219  Sum_probs=60.4

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+++++-.|+|.+              |..++.+++..  +.+++.++.+++..+.+.   +..|...  .+...+. +
T Consensus       179 ~~g~~vlV~G~G~v--------------G~~av~~Ak~~--G~~vi~~~~~~~~~~~~~---~~~Ga~~--~i~~~~~-~  236 (357)
T PLN02514        179 QSGLRGGILGLGGV--------------GHMGVKIAKAM--GHHVTVISSSDKKREEAL---EHLGADD--YLVSSDA-A  236 (357)
T ss_pred             CCCCeEEEEcccHH--------------HHHHHHHHHHC--CCeEEEEeCCHHHHHHHH---HhcCCcE--EecCCCh-H
Confidence            35678888888764              77777788876  467888888876544332   3456532  1211121 2


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+...     ...+|.+|--.+.   ...++.+.+.|++||.++.-..
T Consensus       237 ~~~~~-----~~~~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        237 EMQEA-----ADSLDYIIDTVPV---FHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             HHHHh-----cCCCcEEEECCCc---hHHHHHHHHHhccCCEEEEECC
Confidence            22222     2358988865542   2456677889999999887543

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=84.90  E-value=1.6  Score=40.11  Aligned_cols=72  Identities=24%  Similarity=0.325  Sum_probs=41.8

Q ss_pred             cHHHHHHHH--HC-CCCcEEEEEeCChHHHHHHHHHHHH----hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC
Q 022597          146 GYSSLAIAL--VL-PESGCLVACERDARSLEVAKKYYER----AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  218 (294)
Q Consensus       146 G~~sl~la~--~~-~~~~~v~~id~~~~~~~~A~~~~~~----~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~  218 (294)
                      |-.|..++.  .+ ..+.+|+.+|-||..--.  ++.++    ..+.+++.+...+-...+....+..+...||+||+|.
T Consensus        14 GKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~--~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDl   91 (231)
T PF07015_consen   14 GKTTAAMALASELAARGARVALIDADPNQPLA--KWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDL   91 (231)
T ss_pred             cHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH--HHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeC
Confidence            555555444  33 247899999999876322  22222    2345667777665544554443322234699999995


Q ss_pred             C
Q 022597          219 E  219 (294)
Q Consensus       219 ~  219 (294)
                      .
T Consensus        92 e   92 (231)
T PF07015_consen   92 E   92 (231)
T ss_pred             C
Confidence            3

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.69  E-value=6.9  Score=36.32  Aligned_cols=87  Identities=15%  Similarity=0.115  Sum_probs=51.4

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh---CCC-------------CcEEEEEcchhhhHHHHhhcCCC
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA---GVS-------------HKVKIKHGLAADSLKALILNGEA  208 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~---gl~-------------~~v~~~~gda~~~l~~l~~~~~~  208 (294)
                      |..+..++..+. .+..|+.+|.+++.++.+.+.....   +..             .++++. .+..+.         .
T Consensus        10 G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~---------~   79 (288)
T PRK09260         10 GVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLKAA---------V   79 (288)
T ss_pred             cHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHHHh---------h
Confidence            555555555542 2568999999999998887654321   110             112222 122111         2


Q ss_pred             CceeEEEEcCCccc--hHHHHHHHHhcccCCeEEEE
Q 022597          209 SSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       209 ~~fD~vfiD~~~~~--~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ...|+||.-.+...  -..+|..+.+.++++.+++.
T Consensus        80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~  115 (288)
T PRK09260         80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIAT  115 (288)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence            56799987665332  35677778888888876644

>COG4017 Uncharacterized protein conserved in archaea [Function unknown]

Probab=84.57  E-value=7.5  Score=35.25  Aligned_cols=96  Identities=19%  Similarity=0.106  Sum_probs=59.7

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ...++++|-+|+|.                 .+.+.+..+.+..+|+.+|++|.+-..         +.+.|+|..+   
T Consensus        42 ~~E~~~vli~G~Yl-----------------tG~~~a~~Ls~~~~vtv~Di~p~~r~~---------lp~~v~Fr~~---   92 (254)
T COG4017          42 GEEFKEVLIFGVYL-----------------TGNYTAQMLSKADKVTVVDIHPFMRGF---------LPNNVKFRNL---   92 (254)
T ss_pred             ccCcceEEEEEeee-----------------hhHHHHHHhcccceEEEecCCHHHHhc---------CCCCccHhhh---
Confidence            34567999999985                 456677777668999999999975322         3445666533   


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEEecccCCCcccCcc
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM  255 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~  255 (294)
                        +..     ..+.+|+|+--.+-.. -+++    +..+.|+-.||=|-.   |.+.|+.
T Consensus        93 --~~~-----~~G~~DlivDlTGlGG~~Pe~----L~~fnp~vfiVEdP~---gn~~D~~  138 (254)
T COG4017          93 --LKF-----IRGEVDLIVDLTGLGGIEPEF----LAKFNPKVFIVEDPK---GNVFDVD  138 (254)
T ss_pred             --cCC-----CCCceeEEEeccccCCCCHHH----HhccCCceEEEECCC---CCCCccc
Confidence              222     2688998864333222 2343    455677665554444   6666654

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=84.57  E-value=9.2  Score=34.33  Aligned_cols=95  Identities=22%  Similarity=0.262  Sum_probs=59.5

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      ....+++++|-.|+|.+              |..++.++++..  .+ |++++.+++..+.+++    .|..+.+.....
T Consensus        93 ~~~~~g~~vlI~g~g~v--------------g~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~~~  152 (277)
T cd08255          93 AEPRLGERVAVVGLGLV--------------GLLAAQLAKAAG--AREVVGVDPDAARRELAEA----LGPADPVAADTA  152 (277)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC--CCcEEEECCCHHHHHHHHH----cCCCccccccch
Confidence            34556678888888653              777777888764  55 9999999988766554    341121111110


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                         ..   .    ....+|++|...+.   ...++...+.|+++|.++.
T Consensus       153 ---~~---~----~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~  188 (277)
T cd08255         153 ---DE---I----GGRGADVVIEASGS---PSALETALRLLRDRGRVVL  188 (277)
T ss_pred             ---hh---h----cCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence               00   1    13569988865432   2356777888999998874

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK08507 prephenate dehydrogenase; Validated

Probab=84.40  E-value=6.5  Score=36.23  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             cHHHHHHHHHCCCC---cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc
Q 022597          146 GYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM  222 (294)
Q Consensus       146 G~~sl~la~~~~~~---~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~  222 (294)
                      |..+..++..+...   .+|+++|.+++..+.++    ..|..+.    ..+.    ..+     .+ .|+||+-.+...
T Consensus         9 G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~----~~g~~~~----~~~~----~~~-----~~-aD~Vilavp~~~   70 (275)
T PRK08507          9 GLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL----ELGLVDE----IVSF----EEL-----KK-CDVIFLAIPVDA   70 (275)
T ss_pred             CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH----HCCCCcc----cCCH----HHH-----hc-CCEEEEeCcHHH
Confidence            66666666655332   37999999998766543    3443211    1122    222     23 799999988888


Q ss_pred             hHHHHHHHHhcccCCeEEE
Q 022597          223 YQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       223 ~~~~~~~~~~lLkpgG~iv  241 (294)
                      ..+.++.+.+ +++|.+++
T Consensus        71 ~~~~~~~l~~-l~~~~iv~   88 (275)
T PRK08507         71 IIEILPKLLD-IKENTTII   88 (275)
T ss_pred             HHHHHHHHhc-cCCCCEEE
Confidence            8888888888 88876444

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=84.10  E-value=2.1  Score=39.07  Aligned_cols=46  Identities=20%  Similarity=0.057  Sum_probs=37.9

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCC-------cEEEEEeCChHHHHHHHHHHHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPES-------GCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~-------~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      -+|+|+|.|+               |..+..++..+...       .+++.||.||...+.-++.++.
T Consensus        20 ~~ivE~GaG~---------------G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   20 LRIVEIGAGR---------------GTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             EEEEEES-TT---------------SHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             cEEEEECCCc---------------hHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            4899999999               99999999987632       5899999999998888888765

; PDB: 4F3N_A 1ZKD_B.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=84.04  E-value=4.4  Score=40.17  Aligned_cols=55  Identities=22%  Similarity=0.285  Sum_probs=45.5

Q ss_pred             HHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597          107 QAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus       107 ~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      ..+++..++...+...++|+|.|.               |+.+-.+....  +-.|.+||-|....+.|++.
T Consensus       141 lselvSsi~~f~gi~~vvD~GaG~---------------G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  141 LSELVSSISDFTGIDQVVDVGAGQ---------------GHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             HHHHHHHHHhhcCCCeeEEcCCCc---------------hHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence            456777777788889999999999               99999988766  58999999997777666554

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=84.00  E-value=24  Score=34.35  Aligned_cols=127  Identities=15%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHHh
Q 022597          104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERA  182 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~~  182 (294)
                      +|....+=..++...++..++=+.+|+               +.....+...+.++.+|+..+..-. ....+....+..
T Consensus        49 nPt~~~lE~~lA~l~g~~~~~~~~sG~---------------~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~  113 (377)
T TIGR01324        49 TLTHFALQDAMCELEGGAGCYLYPSGL---------------AAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRM  113 (377)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEECcHH---------------HHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhc
Confidence            354445555555556666777777655               4333333333556778877665443 333444455665


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccCCCcc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGKV  251 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~~g~v  251 (294)
                      |+.  ++++..+..+.++...    ..+..+|++..+  .......++.+.++.+. |..+++|++...|..
T Consensus       114 gi~--v~~~d~~~~e~l~~~i----~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~  179 (377)
T TIGR01324       114 GVD--ITYYDPLIGEDIATLI----QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLL  179 (377)
T ss_pred             CcE--EEEECCCCHHHHHHhc----CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccc
Confidence            652  4443221113343332    345678887643  22334556666665554 667888998755543

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=83.96  E-value=11  Score=34.59  Aligned_cols=93  Identities=13%  Similarity=0.151  Sum_probs=54.8

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCC---CcEEEEEcchhh
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAAD  197 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~---~~v~~~~gda~~  197 (294)
                      +|.=+|+|.                 .+..++..+. .+..|+.++.+++.++..++    .|+.   ...... ....+
T Consensus         2 ~I~IiG~G~-----------------~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~   59 (304)
T PRK06522          2 KIAILGAGA-----------------IGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITVP-VLAAD   59 (304)
T ss_pred             EEEEECCCH-----------------HHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceeec-ccCCC
Confidence            577788854                 4444444332 24689999998877654433    2431   111100 00111


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ....      ...+|+||+-.........++.+.+.+.++..++.
T Consensus        60 ~~~~------~~~~d~vila~k~~~~~~~~~~l~~~l~~~~~iv~   98 (304)
T PRK06522         60 DPAE------LGPQDLVILAVKAYQLPAALPSLAPLLGPDTPVLF   98 (304)
T ss_pred             ChhH------cCCCCEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence            1111      26799999987766678888888888888766553

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=83.96  E-value=2.4  Score=34.93  Aligned_cols=87  Identities=17%  Similarity=0.203  Sum_probs=51.5

Q ss_pred             cHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCC----C-cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          146 GYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS----H-KVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       146 G~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~----~-~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      |..+..++..+ ..+..|+.+...+ ..+.    +++.|+.    . ...+............     .++||+||+-..
T Consensus         7 GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~D~viv~vK   76 (151)
T PF02558_consen    7 GAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSAD-----AGPYDLVIVAVK   76 (151)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHH-----HSTESEEEE-SS
T ss_pred             CHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhc-----cCCCcEEEEEec
Confidence            55555555555 2367899999988 5543    3444431    0 1111111111111011     478999999886


Q ss_pred             ccchHHHHHHHHhcccCCeEEEE
Q 022597          220 KRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       220 ~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .....+.++.+.+.+.++..+++
T Consensus        77 a~~~~~~l~~l~~~~~~~t~iv~   99 (151)
T PF02558_consen   77 AYQLEQALQSLKPYLDPNTTIVS   99 (151)
T ss_dssp             GGGHHHHHHHHCTGEETTEEEEE
T ss_pred             ccchHHHHHHHhhccCCCcEEEE
Confidence            66778899999999999977664

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=83.81  E-value=0.61  Score=38.09  Aligned_cols=41  Identities=22%  Similarity=0.528  Sum_probs=29.0

Q ss_pred             ceeEEEEc---------CCccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597          210 SYDFAFVD---------AEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       210 ~fD~vfiD---------~~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      +||+|+.=         .+......+|+.+..+|+|||++|+.-=-|...
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY   50 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSY   50 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHH
Confidence            48888742         224567899999999999999999986655543

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=83.72  E-value=5.4  Score=34.58  Aligned_cols=95  Identities=22%  Similarity=0.228  Sum_probs=55.6

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChH--HHHH---HHHHHHHhCCCCcEEEEEc-chhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          146 GYSSLAIALVLPESGCLVACERDAR--SLEV---AKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~--~~~~---A~~~~~~~gl~~~v~~~~g-da~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      =..++++++..+.+..+++.-.+.+  ..+.   +.++++... ...+++.++ |+.+.-+...  ....+||.|+-+.+
T Consensus         8 fSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~-~~g~~V~~~VDat~l~~~~~--~~~~~FDrIiFNFP   84 (166)
T PF10354_consen    8 FSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR-ELGVTVLHGVDATKLHKHFR--LKNQRFDRIIFNFP   84 (166)
T ss_pred             hHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh-hcCCccccCCCCCccccccc--ccCCcCCEEEEeCC
Confidence            5567777777664556665555443  3322   334555442 223455443 5544332221  12578999976644


Q ss_pred             cc----------------chHHHHHHHHhcccCCeEEEEe
Q 022597          220 KR----------------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       220 ~~----------------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..                -...+|+.+.++|+++|.|.+.
T Consensus        85 H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT  124 (166)
T PF10354_consen   85 HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT  124 (166)
T ss_pred             CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            11                1467888889999999999875

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=83.60  E-value=7.1  Score=36.24  Aligned_cols=95  Identities=21%  Similarity=0.285  Sum_probs=57.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++++||-.|+|.+              |..++.+++..  +. ++++++.+++..+.+++    .|..+   ++......
T Consensus       165 ~~~~VLI~g~g~v--------------G~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~----~g~~~---vi~~~~~~  221 (339)
T cd08232         165 AGKRVLVTGAGPI--------------GALVVAAARRA--GAAEIVATDLADAPLAVARA----MGADE---TVNLARDP  221 (339)
T ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCCE---EEcCCchh
Confidence            6678888887543              66666777766  44 78999998887765443    34422   22111111


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                       +..+..  ..+.+|+++--.+.   ...++.+++.|+++|.++.
T Consensus       222 -~~~~~~--~~~~vd~vld~~g~---~~~~~~~~~~L~~~G~~v~  260 (339)
T cd08232         222 -LAAYAA--DKGDFDVVFEASGA---PAALASALRVVRPGGTVVQ  260 (339)
T ss_pred             -hhhhhc--cCCCccEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence             222211  12459998865442   2356778899999999885

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=83.59  E-value=17  Score=33.42  Aligned_cols=108  Identities=17%  Similarity=0.194  Sum_probs=61.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCC-cEEEEEeCChHHHHHHHHHHHHh---CCC---------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPES-GCLVACERDARSLEVAKKYYERA---GVS---------  185 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~-~~v~~id~~~~~~~~A~~~~~~~---gl~---------  185 (294)
                      ++-++-|-+||.               ||..--+..-.+.. ..|++.|+|++.++.|++|+...   |++         
T Consensus        51 ~p~tLyDPCCG~---------------gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~  115 (246)
T PF11599_consen   51 GPYTLYDPCCGS---------------GYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELREL  115 (246)
T ss_dssp             S-EEEEETT-TT---------------SHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred             CCeeeeccCCCc---------------cHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHH
Confidence            344899999999               98776666654432 58999999999999998886521   111         


Q ss_pred             -----------------------------CcEEEEEcchhhh--HHHHhhcCCCCceeEEEEcCC------cc------c
Q 022597          186 -----------------------------HKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE------KR------M  222 (294)
Q Consensus       186 -----------------------------~~v~~~~gda~~~--l~~l~~~~~~~~fD~vfiD~~------~~------~  222 (294)
                                                   ....+...|..+.  +..+. .  ....|+|+-|.+      |.      .
T Consensus       116 ~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~--~~~~diViTDlPYG~~t~W~g~~~~~p  192 (246)
T PF11599_consen  116 YEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-A--GFTPDIVITDLPYGEMTSWQGEGSGGP  192 (246)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-T--T---SEEEEE--CCCSSSTTS---HHH
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc-c--CCCCCEEEecCCCcccccccCCCCCCc
Confidence                                         1244555555442  11121 1  233588888854      11      2


Q ss_pred             hHHHHHHHHhcccCCeEEEEec
Q 022597          223 YQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       223 ~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ...+|+.+.+.|.+++++++.+
T Consensus       193 ~~~ml~~l~~vLp~~sVV~v~~  214 (246)
T PF11599_consen  193 VAQMLNSLAPVLPERSVVAVSD  214 (246)
T ss_dssp             HHHHHHHHHCCS-TT-EEEEEE
T ss_pred             HHHHHHHHHhhCCCCcEEEEec
Confidence            5678888999997778877743

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=83.42  E-value=27  Score=34.79  Aligned_cols=126  Identities=12%  Similarity=0.091  Sum_probs=68.5

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHH-HHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSL-EVAKKYYER  181 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~-~~A~~~~~~  181 (294)
                      ..|....+=..++...+++..+-.++|+               +...+.+...++++.+|+..+..-... ....+.+++
T Consensus        67 ~~pt~~~le~~la~l~g~~~~v~fsSG~---------------~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~  131 (437)
T PRK05613         67 TNPTVEALENRIASLEGGVHAVAFASGQ---------------AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNR  131 (437)
T ss_pred             cChHHHHHHHHHHHHhCCCeEEEeCCHH---------------HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHh
Confidence            4566666666777777888888888876               444444443356677887765433332 344556666


Q ss_pred             hCCCCcEEEEE--cchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccCCCc
Q 022597          182 AGVSHKVKIKH--GLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGK  250 (294)
Q Consensus       182 ~gl~~~v~~~~--gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~~g~  250 (294)
                      .|+.  ++++.  .|. +.++..+    .....+|++...  .......++.+.++.+. |-.+++|+..-.|.
T Consensus       132 ~Gi~--v~~vd~~~d~-e~l~~~l----~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~  198 (437)
T PRK05613        132 LGIE--VTFVENPDDP-ESWQAAV----QPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAA  198 (437)
T ss_pred             cCeE--EEEECCCCCH-HHHHHhC----CccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCcccc
Confidence            6653  55553  122 2233322    234567776432  11112234444444444 55677788754443

>PRK09028 cystathionine beta-lyase; Provisional

Probab=83.36  E-value=25  Score=34.65  Aligned_cols=124  Identities=14%  Similarity=0.166  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCCh-HHHHHHHHHHHHhC
Q 022597          105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAG  183 (294)
Q Consensus       105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~-~~~~~A~~~~~~~g  183 (294)
                      |....+=..++.+.++..++=..+|+               ......+...++++.+|+..+..- .....+...+++.|
T Consensus        61 pt~~~Le~~iA~le~~~~~~~~~sG~---------------~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~G  125 (394)
T PRK09028         61 PTHFAFQAAIVELEGGAGTALYPSGA---------------AAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFG  125 (394)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHH---------------HHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcc
Confidence            33334444444445555666555654               333333333356677888877653 44455555666666


Q ss_pred             CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccCCC
Q 022597          184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHG  249 (294)
Q Consensus       184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~~g  249 (294)
                      +.  ++++..+..+.+++..    ..+-.+|++..+  +......++.+.++.+. |..+++|++...+
T Consensus       126 i~--v~~v~~~~~e~l~~~l----~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p  188 (394)
T PRK09028        126 IE--TTYYDPMIGEGIRELI----RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP  188 (394)
T ss_pred             eE--EEEECCCCHHHHHHhc----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence            53  4444322223344432    244678887654  22334556666666665 5677788887544

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=83.31  E-value=6.7  Score=36.96  Aligned_cols=88  Identities=14%  Similarity=0.189  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHH---HH---HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC
Q 022597          146 GYSSLAIALVLPE-SGCLVACERDARSLEVAKKY---YE---RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA  218 (294)
Q Consensus       146 G~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~---~~---~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~  218 (294)
                      |..+..++..+.. +..|+.++.+++..+..++.   .+   ...+...+++. .|..+.   +     .+..|+||+-.
T Consensus         9 Ga~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~---~-----~~~~Dliiiav   79 (326)
T PRK14620          9 GSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV---L-----SDNATCIILAV   79 (326)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH---H-----hCCCCEEEEEe
Confidence            5555555555432 45899999998877655542   11   01111223332 222221   1     25789999988


Q ss_pred             CccchHHHHHHHHh-cccCCeEEEE
Q 022597          219 EKRMYQEYFELLLQ-LIRVGGIIVI  242 (294)
Q Consensus       219 ~~~~~~~~~~~~~~-lLkpgG~ivi  242 (294)
                      ......+.++.+.+ .+.++..++.
T Consensus        80 ks~~~~~~l~~l~~~~l~~~~~vv~  104 (326)
T PRK14620         80 PTQQLRTICQQLQDCHLKKNTPILI  104 (326)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCEEEE
Confidence            77778888999888 8888875554

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=83.31  E-value=39  Score=33.12  Aligned_cols=126  Identities=18%  Similarity=0.189  Sum_probs=69.6

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeC-ChHHHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYER  181 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~-~~~~~~~A~~~~~~  181 (294)
                      -+|....+-..++...+...++-+++|+               ......+...+.++.+|+..+. .........+.++.
T Consensus        68 ~~p~~~~le~~lA~l~g~~~al~~~sG~---------------~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~  132 (403)
T PRK07810         68 GNPTVSMFEERLRLIEGAEACFATASGM---------------SAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPR  132 (403)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEECChH---------------HHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHH
Confidence            3556677777788888888899888866               4444444333555667776653 22344455556666


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccCCC
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHG  249 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~~g  249 (294)
                      .|.  .+.++..+-.+.++..+    ...-++|++..+  +......++.+.++.+. |-.+++|+..-.+
T Consensus       133 ~G~--~v~~vd~~d~~~l~~ai----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~  197 (403)
T PRK07810        133 WGV--ETVFVDGEDLSQWEEAL----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATP  197 (403)
T ss_pred             cCc--EEEEECCCCHHHHHHhc----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence            665  35555333223333332    234578886533  11111224444444443 5567788875433

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=83.26  E-value=2.1  Score=36.69  Aligned_cols=44  Identities=18%  Similarity=0.189  Sum_probs=33.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK  177 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~  177 (294)
                      .++.+|+=+|.|.+              |..+..++..++  .+++..|.+++..+..+.
T Consensus        18 ~~p~~vvv~G~G~v--------------g~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~   61 (168)
T PF01262_consen   18 VPPAKVVVTGAGRV--------------GQGAAEIAKGLG--AEVVVPDERPERLRQLES   61 (168)
T ss_dssp             E-T-EEEEESTSHH--------------HHHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             CCCeEEEEECCCHH--------------HHHHHHHHhHCC--CEEEeccCCHHHHHhhhc
Confidence            45669999999985              999999999984  899999999987665443

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=83.18  E-value=16  Score=36.41  Aligned_cols=97  Identities=11%  Similarity=0.256  Sum_probs=60.8

Q ss_pred             cHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcC------C---CCceeEEE
Q 022597          146 GYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------E---ASSYDFAF  215 (294)
Q Consensus       146 G~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~------~---~~~fD~vf  215 (294)
                      ||.++-+|.+... +.+|+|+|+++..++...+     |   +..+..-+..+.++.....|      +   ....|+++
T Consensus        18 GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i   89 (436)
T COG0677          18 GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI   89 (436)
T ss_pred             ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence            7777777666543 5799999999987754321     2   23444444444344433322      1   12567666


Q ss_pred             EcCC----------ccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597          216 VDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       216 iD~~----------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      +-.+          -.......+.+.+.|++|-.+++....++|.
T Consensus        90 I~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT  134 (436)
T COG0677          90 ICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT  134 (436)
T ss_pred             EEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence            5433          1113455666778999999999999999986

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.09  E-value=11  Score=35.28  Aligned_cols=94  Identities=21%  Similarity=0.229  Sum_probs=55.2

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh-CC--C--------CcE
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA-GV--S--------HKV  188 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~-gl--~--------~~v  188 (294)
                      ++|-=||+|                 ..+..++..+. .+.+|+.+|.+++.++.+++.++.. |.  .        .++
T Consensus         5 ~~I~vIGaG-----------------~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   67 (311)
T PRK06130          5 QNLAIIGAG-----------------TMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRI   67 (311)
T ss_pred             cEEEEECCC-----------------HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhce
Confidence            467778885                 44554444432 2568999999999988887754321 21  0        112


Q ss_pred             EEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc--chHHHHHHHHhcccCCeEEE
Q 022597          189 KIKHGLAADSLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~--~~~~~~~~~~~lLkpgG~iv  241 (294)
                      ++. .+..+.         ....|+||+-.+..  ....+++.+.+.++++.+++
T Consensus        68 ~~~-~~~~~~---------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~  112 (311)
T PRK06130         68 RME-AGLAAA---------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA  112 (311)
T ss_pred             EEe-CCHHHH---------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence            221 122111         24679999876533  35677888777776665443

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=82.98  E-value=12  Score=34.43  Aligned_cols=101  Identities=16%  Similarity=0.230  Sum_probs=61.0

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      ..+..++++||-+|+|. +             |...+.++++.  +.+ ++.++.+++..+.++    +.|..   .++.
T Consensus       154 ~~~~~~g~~vlI~g~g~-v-------------g~~~~~la~~~--G~~~v~~~~~~~~~~~~~~----~~g~~---~~~~  210 (334)
T cd08234         154 LLGIKPGDSVLVFGAGP-I-------------GLLLAQLLKLN--GASRVTVAEPNEEKLELAK----KLGAT---ETVD  210 (334)
T ss_pred             hcCCCCCCEEEEECCCH-H-------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHHH----HhCCe---EEec
Confidence            34455667898888753 2             66777777775  455 888999988776653    33543   2222


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+..+.... .. .....+|++|--.+.   ...++.+.+.|+++|.++.
T Consensus       211 ~~~~~~~~~-~~-~~~~~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~  255 (334)
T cd08234         211 PSREDPEAQ-KE-DNPYGFDVVIEATGV---PKTLEQAIEYARRGGTVLV  255 (334)
T ss_pred             CCCCCHHHH-HH-hcCCCCcEEEECCCC---hHHHHHHHHHHhcCCEEEE
Confidence            221111111 11 114579999854432   3566677888999999875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=82.87  E-value=18  Score=27.29  Aligned_cols=75  Identities=25%  Similarity=0.300  Sum_probs=51.1

Q ss_pred             EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeE
Q 022597          162 LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGI  239 (294)
Q Consensus       162 v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~  239 (294)
                      |..+|-++...+..++.++..|+. .+. ...+..+.+..+.    ...+|+|++|..  .....++++.+...-....+
T Consensus         1 Ilivd~~~~~~~~l~~~l~~~~~~-~v~-~~~~~~~~~~~~~----~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~i   74 (112)
T PF00072_consen    1 ILIVDDDPEIRELLEKLLERAGYE-EVT-TASSGEEALELLK----KHPPDLIIIDLELPDGDGLELLEQIRQINPSIPI   74 (112)
T ss_dssp             EEEEESSHHHHHHHHHHHHHTTEE-EEE-EESSHHHHHHHHH----HSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEE
T ss_pred             cEEEECCHHHHHHHHHHHHhCCCC-EEE-EECCHHHHHHHhc----ccCceEEEEEeeeccccccccccccccccccccE
Confidence            456899999999999999977763 233 3456666665553    366999999964  34566778777655533344


Q ss_pred             EEE
Q 022597          240 IVI  242 (294)
Q Consensus       240 ivi  242 (294)
                      +++
T Consensus        75 i~~   77 (112)
T PF00072_consen   75 IVV   77 (112)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            444

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=82.80  E-value=15  Score=33.92  Aligned_cols=101  Identities=22%  Similarity=0.296  Sum_probs=60.6

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ...+++||=.|+|. +             |...+.+++... ..++++++.+++..+.+    ++.|...-+.. ..+..
T Consensus       165 ~~~~~~vlI~g~~~-v-------------g~~~~~~a~~~g-~~~v~~~~~~~~~~~~~----~~~g~~~~~~~-~~~~~  224 (340)
T cd05284         165 LDPGSTVVVIGVGG-L-------------GHIAVQILRALT-PATVIAVDRSEEALKLA----ERLGADHVLNA-SDDVV  224 (340)
T ss_pred             CCCCCEEEEEcCcH-H-------------HHHHHHHHHHhC-CCcEEEEeCCHHHHHHH----HHhCCcEEEcC-CccHH
Confidence            34567888889765 2             666667777653 26899999888776544    34555321111 11122


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.+..+.   ....+|+++--.+.   ...++.+++.|+++|.++.-
T Consensus       225 ~~i~~~~---~~~~~dvvld~~g~---~~~~~~~~~~l~~~g~~i~~  265 (340)
T cd05284         225 EEVRELT---GGRGADAVIDFVGS---DETLALAAKLLAKGGRYVIV  265 (340)
T ss_pred             HHHHHHh---CCCCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            2222221   13469988864432   24567778889999998853

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK08064 cystathionine beta-lyase; Provisional

Probab=82.74  E-value=41  Score=32.72  Aligned_cols=123  Identities=12%  Similarity=0.192  Sum_probs=63.6

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYER  181 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~  181 (294)
                      ..|...++-..++...+....+-+++|+               +...+.+. .+.++.+|+..+..-. ......+.++.
T Consensus        52 ~~p~~~~le~~lA~l~g~~~~v~~~sG~---------------~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~  115 (390)
T PRK08064         52 GNPTREALEDIIAELEGGTKGFAFASGM---------------AAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSR  115 (390)
T ss_pred             CChhHHHHHHHHHHHhCCCCeEEECCHH---------------HHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHH
Confidence            3566666666677766666666667755               43333332 4555677777665332 34444555666


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccC-CeEEEEecccC
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRV-GGIIVIDNVLW  247 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkp-gG~ivid~vl~  247 (294)
                      .|.  ++.++..+-.+.+....    ...-.+|++..+.  ......++.+.++.+. |..+++|+..-
T Consensus       116 ~G~--~v~~v~~~d~~~l~~~l----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~  178 (390)
T PRK08064        116 FGI--EHTFVDMTNLEEVAQNI----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFL  178 (390)
T ss_pred             cCC--EEEEECCCCHHHHHHhc----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCC
Confidence            665  34444332223333322    2345788876441  1111223333333333 66788888743

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=82.67  E-value=14  Score=35.54  Aligned_cols=104  Identities=15%  Similarity=0.145  Sum_probs=61.4

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc--
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--  193 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g--  193 (294)
                      +...+++||=.|+|.+              |..++.+++..+ ..++++++.+++..+.++    +.|...-+.....  
T Consensus       200 ~~~~g~~VlV~g~g~v--------------G~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~----~~g~~~~v~~~~~~~  260 (384)
T cd08265         200 GFRPGAYVVVYGAGPI--------------GLAAIALAKAAG-ASKVIAFEISEERRNLAK----EMGADYVFNPTKMRD  260 (384)
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCEEEccccccc
Confidence            3445678877788653              777777777764 227999999888654444    4565322222111  


Q ss_pred             -chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          194 -LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 -da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                       +..+.+..+   .....+|+|+--.+  .....++.+.+.|+++|.++.-
T Consensus       261 ~~~~~~v~~~---~~g~gvDvvld~~g--~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         261 CLSGEKVMEV---TKGWGADIQVEAAG--APPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             ccHHHHHHHh---cCCCCCCEEEECCC--CcHHHHHHHHHHHHcCCEEEEE
Confidence             222222222   12346898774332  2235577788899999998853

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.66  E-value=13  Score=36.41  Aligned_cols=97  Identities=19%  Similarity=0.146  Sum_probs=59.9

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .++++=+|+                 |..+..+++.+.. +..++.+|.+++.++.+++..      ..+.++.||+.+.
T Consensus       231 ~~~iiIiG~-----------------G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~  287 (453)
T PRK09496        231 VKRVMIVGG-----------------GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQ  287 (453)
T ss_pred             CCEEEEECC-----------------CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCH
Confidence            468999898                 6677777777743 678999999999876655432      2367889998643


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                       ..+... .-..+|.|++-.+.....-....+.+.+.+.-+++
T Consensus       288 -~~L~~~-~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        288 -ELLEEE-GIDEADAFIALTNDDEANILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             -HHHHhc-CCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence             222221 14678988876543322222233334455543433

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=82.65  E-value=4.6  Score=40.89  Aligned_cols=97  Identities=10%  Similarity=0.111  Sum_probs=62.3

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      +++.+|||.                 +-+..-..-..--.|+.+|.|+-.++.+.....  --....++...|.....- 
T Consensus        51 ~~l~lGCGN-----------------S~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~f-  110 (482)
T KOG2352|consen   51 KILQLGCGN-----------------SELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVF-  110 (482)
T ss_pred             eeEeecCCC-----------------CHHHHHHHhcCCCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccC-
Confidence            799999965                 444444333223579999999988876655443  123347777777754322 


Q ss_pred             HhhcCCCCceeEEEE---------cCC----ccchHHHHHHHHhcccCCeEEEEe
Q 022597          202 LILNGEASSYDFAFV---------DAE----KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       202 l~~~~~~~~fD~vfi---------D~~----~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                           +.++||+|+.         |..    .......+..+.++|++||..+.=
T Consensus       111 -----edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~sv  160 (482)
T KOG2352|consen  111 -----EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISV  160 (482)
T ss_pred             -----CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEE
Confidence                 2577887753         221    123456788889999999986543

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=82.64  E-value=15  Score=34.14  Aligned_cols=103  Identities=23%  Similarity=0.334  Sum_probs=61.2

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      .+...++.+||-.|+|.+              |...+.+++..  +.+ +++++.+++..+.++    ..|...-+....
T Consensus       154 ~~~~~~~~~vlI~g~g~~--------------g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~  213 (343)
T cd08236         154 LAGITLGDTVVVIGAGTI--------------GLLAIQWLKIL--GAKRVIAVDIDDEKLAVAR----ELGADDTINPKE  213 (343)
T ss_pred             hcCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEEcCCHHHHHHHH----HcCCCEEecCcc
Confidence            344456678888887653              77777788876  354 899988887665543    345432122211


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .. .+.+....   ....+|.+|--.+.   ...+..+.+.|+++|.++.-
T Consensus       214 ~~-~~~~~~~~---~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         214 ED-VEKVRELT---EGRGADLVIEAAGS---PATIEQALALARPGGKVVLV  257 (343)
T ss_pred             cc-HHHHHHHh---CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence            11 22222221   13459988854322   24567788999999998753

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=82.60  E-value=14  Score=33.97  Aligned_cols=93  Identities=19%  Similarity=0.277  Sum_probs=59.8

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++||=.|+|.+              |...+.+++..  +.++++++.+++..+.+++    .|....+..     
T Consensus       152 ~~~~g~~vlV~g~g~v--------------g~~~~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~~~~-----  206 (319)
T cd08242         152 PITPGDKVAVLGDGKL--------------GLLIAQVLALT--GPDVVLVGRHSEKLALARR----LGVETVLPD-----  206 (319)
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----cCCcEEeCc-----
Confidence            3455678888887643              66666677766  5679999999988777665    454321111     


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+.   .    ....+|.+|--.+.   ...++.+.+.|+++|.++.-
T Consensus       207 ~~~---~----~~~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~  244 (319)
T cd08242         207 EAE---S----EGGGFDVVVEATGS---PSGLELALRLVRPRGTVVLK  244 (319)
T ss_pred             ccc---c----cCCCCCEEEECCCC---hHHHHHHHHHhhcCCEEEEE
Confidence            111   1    13569988754432   23566778889999999863

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=82.55  E-value=6.4  Score=37.56  Aligned_cols=138  Identities=17%  Similarity=0.210  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHHHcCCCC-----CCCCCHHH--HHHHHHHH-hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHH
Q 022597           83 PEILRQLREETAGMRGS-----QMQVSPDQ--AQLLAMLV-QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIAL  154 (294)
Q Consensus        83 ~~~L~~~~~~~~~~~~~-----~~~v~~~~--~~lL~~l~-~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~  154 (294)
                      .++|++.++-++..+..     |-.+.|++  .+...+.- .-+.++.|+-+|--                -..+++++.
T Consensus       108 ~dll~kf~eiaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvGDD----------------DLtsia~aL  171 (354)
T COG1568         108 KDLLEKFREIAKDRPEPLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVGDD----------------DLTSIALAL  171 (354)
T ss_pred             HHHHHHHHHHHhcCCCcchhcccccccccceeeeeeeeccccCcCCCeEEEEcCc----------------hhhHHHHHh
Confidence            46777777776654422     22344443  11111111 12456789999953                344555554


Q ss_pred             HCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHh
Q 022597          155 VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQ  232 (294)
Q Consensus       155 ~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~  232 (294)
                      ..- ..+|..+|+++..+....+..++.|+.+ ++.+.-|.+.-+++-.    ..+||..+-|++.  .....|+..-..
T Consensus       172 t~m-pk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe~~----~~kFDvfiTDPpeTi~alk~FlgRGI~  245 (354)
T COG1568         172 TGM-PKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPEDL----KRKFDVFITDPPETIKALKLFLGRGIA  245 (354)
T ss_pred             cCC-CceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChHHH----HhhCCeeecCchhhHHHHHHHHhccHH
Confidence            322 3689999999999999999999999974 7777777776555422    4789999988862  223444444445


Q ss_pred             cccCC---eEEEE
Q 022597          233 LIRVG---GIIVI  242 (294)
Q Consensus       233 lLkpg---G~ivi  242 (294)
                      .|+.-   |++-+
T Consensus       246 tLkg~~~aGyfgi  258 (354)
T COG1568         246 TLKGEGCAGYFGI  258 (354)
T ss_pred             HhcCCCccceEee
Confidence            56655   55543

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=82.55  E-value=39  Score=33.75  Aligned_cols=124  Identities=15%  Similarity=0.185  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEE-eCChHHHHHHHHHHHHhC
Q 022597          105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVAC-ERDARSLEVAKKYYERAG  183 (294)
Q Consensus       105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~i-d~~~~~~~~A~~~~~~~g  183 (294)
                      |..-.+-..+..+.++..++-.-+|.               ...+..+..-+|.+.++++. |.--....+.++...+.|
T Consensus        77 Pt~~~le~~iaal~ga~~~l~fsSGm---------------aA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~g  141 (409)
T KOG0053|consen   77 PTRDVLESGIAALEGAAHALLFSSGM---------------AAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFG  141 (409)
T ss_pred             CchHHHHHHHHHHhCCceEEEecccH---------------HHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhC
Confidence            33444445556666777788777766               55666666666777777766 456667888888888877


Q ss_pred             CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecccCCCccc
Q 022597          184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA  252 (294)
Q Consensus       184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~  252 (294)
                      ..  ++++..+-.+-+...+    .+.-++||+-.+      ..+.+.+-+.+.   ++|-.+|+||.+-.+...
T Consensus       142 ie--~~~vd~~~~~~~~~~i----~~~t~~V~~ESPsNPll~v~DI~~l~~la~---~~g~~vvVDnTf~~p~~~  207 (409)
T KOG0053|consen  142 GE--GDFVDVDDLKKILKAI----KENTKAVFLESPSNPLLKVPDIEKLARLAH---KYGFLVVVDNTFGSPYNQ  207 (409)
T ss_pred             ce--eeeechhhHHHHHHhh----ccCceEEEEECCCCCccccccHHHHHHHHh---hCCCEEEEeCCcCccccc
Confidence            64  5666544433333332    346899998755      223344333333   677778889887555333

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=82.50  E-value=6.1  Score=36.47  Aligned_cols=34  Identities=12%  Similarity=0.208  Sum_probs=27.6

Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          209 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       209 ~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ..+|+||+-.......+.++.+.+.+.++.+++.
T Consensus        67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~  100 (305)
T PRK12921         67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP  100 (305)
T ss_pred             CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence            6799999988766778888888888888876653

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=82.33  E-value=37  Score=33.83  Aligned_cols=95  Identities=16%  Similarity=0.241  Sum_probs=55.3

Q ss_pred             cHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHH------------HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee
Q 022597          146 GYSSLAIALVLPE-SGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  212 (294)
Q Consensus       146 G~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~------------~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD  212 (294)
                      ||.++..+..+.+ +-.|+++|++++-++..++            .++++....|+++. .|+.+.+         ..-|
T Consensus         9 GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~---------~~ad   78 (414)
T COG1004           9 GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV---------KDAD   78 (414)
T ss_pred             chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH---------hcCC
Confidence            6665554444432 4689999999998876543            33333333445553 3333322         3467


Q ss_pred             EEEEcCC---ccc-------hHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597          213 FAFVDAE---KRM-------YQEYFELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       213 ~vfiD~~---~~~-------~~~~~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      ++|+-.+   +++       .....+.+.+.++..-++|+-.....|.
T Consensus        79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt  126 (414)
T COG1004          79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGT  126 (414)
T ss_pred             EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCc
Confidence            7887543   111       2344555567777778888877766664

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=81.94  E-value=19  Score=33.35  Aligned_cols=103  Identities=20%  Similarity=0.212  Sum_probs=62.9

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ....+.+||=.|++.++             |..+..++++.  +.+++.++.+++..+.++    ..|...-+.....+.
T Consensus       162 ~~~~~~~vlV~g~~~~v-------------g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~  222 (341)
T cd08297         162 GLKPGDWVVISGAGGGL-------------GHLGVQYAKAM--GLRVIAIDVGDEKLELAK----ELGADAFVDFKKSDD  222 (341)
T ss_pred             CCCCCCEEEEECCCchH-------------HHHHHHHHHHC--CCeEEEEeCCHHHHHHHH----HcCCcEEEcCCCccH
Confidence            45566789888887533             77777788876  478999999987765543    345332112211122


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+.+..+   .....+|.++.+....   .....+.+.++++|.++.-
T Consensus       223 ~~~~~~~---~~~~~vd~vl~~~~~~---~~~~~~~~~l~~~g~~v~~  264 (341)
T cd08297         223 VEAVKEL---TGGGGAHAVVVTAVSA---AAYEQALDYLRPGGTLVCV  264 (341)
T ss_pred             HHHHHHH---hcCCCCCEEEEcCCch---HHHHHHHHHhhcCCEEEEe
Confidence            2222222   1235699988644322   3456677888999999854

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK06940 short chain dehydrogenase; Provisional

Probab=81.80  E-value=21  Score=32.50  Aligned_cols=72  Identities=21%  Similarity=0.136  Sum_probs=45.9

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh--HHHHhhc-CCCCceeEEEEcCC
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN-GEASSYDFAFVDAE  219 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~--l~~l~~~-~~~~~fD~vfiD~~  219 (294)
                      |..+..+++.+..+.+|+.++.+++..+.+.+.++..|  .++.++..|..+.  +..+... ...+.+|.++..++
T Consensus        11 ~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG   85 (275)
T PRK06940         11 GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAG   85 (275)
T ss_pred             ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            45777777777667899999999887766555555433  3577777776542  2222211 01357899987765

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=81.65  E-value=20  Score=28.00  Aligned_cols=71  Identities=14%  Similarity=0.186  Sum_probs=43.4

Q ss_pred             CCCCcEEE-EEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcc
Q 022597          156 LPESGCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI  234 (294)
Q Consensus       156 ~~~~~~v~-~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lL  234 (294)
                      ..++.+++ .+|.+++..+.+   .++.|..     ...|..+.+.       ...+|+|++..+...-.++   +...|
T Consensus        22 ~~~~~~v~~v~d~~~~~~~~~---~~~~~~~-----~~~~~~~ll~-------~~~~D~V~I~tp~~~h~~~---~~~~l   83 (120)
T PF01408_consen   22 SSPDFEVVAVCDPDPERAEAF---AEKYGIP-----VYTDLEELLA-------DEDVDAVIIATPPSSHAEI---AKKAL   83 (120)
T ss_dssp             TTTTEEEEEEECSSHHHHHHH---HHHTTSE-----EESSHHHHHH-------HTTESEEEEESSGGGHHHH---HHHHH
T ss_pred             cCCCcEEEEEEeCCHHHHHHH---HHHhccc-----chhHHHHHHH-------hhcCCEEEEecCCcchHHH---HHHHH
Confidence            33466765 689998876554   4444443     4556655554       2579999998876544443   44555


Q ss_pred             cCCeEEEEec
Q 022597          235 RVGGIIVIDN  244 (294)
Q Consensus       235 kpgG~ivid~  244 (294)
                      +.|--++++-
T Consensus        84 ~~g~~v~~EK   93 (120)
T PF01408_consen   84 EAGKHVLVEK   93 (120)
T ss_dssp             HTTSEEEEES
T ss_pred             HcCCEEEEEc
Confidence            5666666653

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=81.63  E-value=4.9  Score=36.95  Aligned_cols=66  Identities=17%  Similarity=0.281  Sum_probs=44.0

Q ss_pred             CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCe
Q 022597          159 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGG  238 (294)
Q Consensus       159 ~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG  238 (294)
                      ..+|+++|.+++..+.|+    +.|+.+..   ..+ .+   .+      ..+|+|++-.+.....++++.+.+.+++|+
T Consensus        11 ~~~v~g~d~~~~~~~~a~----~~g~~~~~---~~~-~~---~~------~~~DlvvlavP~~~~~~~l~~~~~~~~~~~   73 (258)
T PF02153_consen   11 DVEVYGYDRDPETLEAAL----ELGIIDEA---STD-IE---AV------EDADLVVLAVPVSAIEDVLEEIAPYLKPGA   73 (258)
T ss_dssp             TSEEEEE-SSHHHHHHHH----HTTSSSEE---ESH-HH---HG------GCCSEEEE-S-HHHHHHHHHHHHCGS-TTS
T ss_pred             CeEEEEEeCCHHHHHHHH----HCCCeeec---cCC-Hh---Hh------cCCCEEEEcCCHHHHHHHHHHhhhhcCCCc
Confidence            579999999999876654    34654422   111 12   22      457999999998889999999999998886


Q ss_pred             EEE
Q 022597          239 IIV  241 (294)
Q Consensus       239 ~iv  241 (294)
                      +++
T Consensus        74 iv~   76 (258)
T PF02153_consen   74 IVT   76 (258)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=81.50  E-value=22  Score=33.57  Aligned_cols=50  Identities=20%  Similarity=0.152  Sum_probs=28.7

Q ss_pred             cEEEEEeCChHHHH-HHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          160 GCLVACERDARSLE-VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       160 ~~v~~id~~~~~~~-~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      .+++.+|.+++..+ .+..............+..+|..+    +      ...|+||+-++
T Consensus        26 ~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~----l------~~aDiViita~   76 (308)
T cd05292          26 SEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD----C------KGADVVVITAG   76 (308)
T ss_pred             CEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH----h------CCCCEEEEccC
Confidence            58999999987664 333333222222334555455432    2      46799988654

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=81.28  E-value=34  Score=32.84  Aligned_cols=121  Identities=10%  Similarity=0.212  Sum_probs=63.5

Q ss_pred             CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHHh
Q 022597          104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERA  182 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~~  182 (294)
                      .|....+-..+++..+....+=+++|+               ....+.+. .++++.+|+..+..-. ........++..
T Consensus        51 ~pt~~~le~~la~l~g~~~~~~~~sG~---------------~ai~~~~~-ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~  114 (366)
T PRK08247         51 NPTRGVLEQAIADLEGGDQGFACSSGM---------------AAIQLVMS-LFRSGDELIVSSDLYGGTYRLFEEHWKKW  114 (366)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEEcCHH---------------HHHHHHHH-HhCCCCEEEEecCCcCcHHHHHHHHhhcc
Confidence            344555555666666666666666655               33333332 3455667777665332 334445556666


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEeccc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVL  246 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl  246 (294)
                      |.  ++.++..+-.+.++..+    ....++||+..+  +......++.+.++.+. |..+++|++.
T Consensus       115 G~--~v~~vd~~d~~~l~~~i----~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~  175 (366)
T PRK08247        115 NV--RFVYVNTASLKAIEQAI----TPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTF  175 (366)
T ss_pred             Cc--eEEEECCCCHHHHHHhc----ccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence            64  24444322223333322    235678887433  22233445555555544 6678888886

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=81.25  E-value=23  Score=32.93  Aligned_cols=85  Identities=13%  Similarity=0.148  Sum_probs=52.6

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHH-------HhCCC---------CcEEEEEcchhhhHHHHhhcCCC
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYE-------RAGVS---------HKVKIKHGLAADSLKALILNGEA  208 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~-------~~gl~---------~~v~~~~gda~~~l~~l~~~~~~  208 (294)
                      |..+..++..+. .+..|+.+|.+++.++.+++.++       +.|.-         .++++. .+.    ..      .
T Consensus        13 G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~----~~------~   81 (295)
T PLN02545         13 GQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCT-TNL----EE------L   81 (295)
T ss_pred             CHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEee-CCH----HH------h
Confidence            556666666542 25789999999999887665543       22211         112221 121    11      2


Q ss_pred             CceeEEEEcCC--ccchHHHHHHHHhcccCCeEEE
Q 022597          209 SSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       209 ~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      ..-|+||.-..  ......+|+.+.+.++++.+++
T Consensus        82 ~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~  116 (295)
T PLN02545         82 RDADFIIEAIVESEDLKKKLFSELDRICKPSAILA  116 (295)
T ss_pred             CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEE
Confidence            45799998765  4446678888888888887665

>PRK05939 hypothetical protein; Provisional

Probab=81.09  E-value=38  Score=33.22  Aligned_cols=121  Identities=17%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHHh
Q 022597          104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERA  182 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~~  182 (294)
                      .|....+=..++...++..++-+.+|+               +.....+...++++.+|+..+.... ..... ..+++.
T Consensus        46 ~p~~~~lE~~la~leg~~~~v~~ssG~---------------~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~-~~l~~~  109 (397)
T PRK05939         46 TPTTAALEAKITKMEGGVGTVCFATGM---------------AAIAAVFLTLLRAGDHLVSSQFLFGNTNSLF-GTLRGL  109 (397)
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHH---------------HHHHHHHHHHcCCCCEEEECCCccccHHHHH-HHHHhc
Confidence            466666666677777787888777765               4333333334566778877765432 22222 335555


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEeccc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVL  246 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl  246 (294)
                      |.  .+.++..+-.+.++...    ..+-.+|++...  .......++.+.++.+. |..+++|+..
T Consensus       110 G~--~v~~v~~~d~e~l~~~l----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~  170 (397)
T PRK05939        110 GV--EVTMVDATDVQNVAAAI----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM  170 (397)
T ss_pred             CC--EEEEECCCCHHHHHHhC----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence            65  34544322223344332    244567777543  22223445555555554 5567777765

>PLN02256 arogenate dehydrogenase

Probab=81.00  E-value=16  Score=34.74  Aligned_cols=84  Identities=15%  Similarity=0.111  Sum_probs=50.8

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      .+|.=||+                 |..+-+++..+.. +.+|+++|.++. .+    ..+..|.    .. ..+..+.+
T Consensus        37 ~kI~IIG~-----------------G~mG~slA~~L~~~G~~V~~~d~~~~-~~----~a~~~gv----~~-~~~~~e~~   89 (304)
T PLN02256         37 LKIGIVGF-----------------GNFGQFLAKTFVKQGHTVLATSRSDY-SD----IAAELGV----SF-FRDPDDFC   89 (304)
T ss_pred             CEEEEEee-----------------CHHHHHHHHHHHhCCCEEEEEECccH-HH----HHHHcCC----ee-eCCHHHHh
Confidence            37888898                 5555666665532 358999999863 22    2233343    22 22222221


Q ss_pred             HHHhhcCCCCceeEEEEcCCccchHHHHHHH-HhcccCCeE
Q 022597          200 KALILNGEASSYDFAFVDAEKRMYQEYFELL-LQLIRVGGI  239 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~-~~lLkpgG~  239 (294)
                              ....|+||+-.+.....++++.+ .+.+++|.+
T Consensus        90 --------~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~i  122 (304)
T PLN02256         90 --------EEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTL  122 (304)
T ss_pred             --------hCCCCEEEEecCHHHHHHHHHhhhhhccCCCCE
Confidence                    13579999988776677777777 566777753

>PRK07671 cystathionine beta-lyase; Provisional

Probab=80.99  E-value=44  Score=32.37  Aligned_cols=123  Identities=11%  Similarity=0.195  Sum_probs=64.2

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH-HHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYER  181 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~-~~~~A~~~~~~  181 (294)
                      -.|....+-..++...+....+=+|+|+               +.....+. .+.++.+|+..+..-. ......+.++.
T Consensus        48 ~~p~~~~Le~~lA~l~g~~~~~~~~sG~---------------aai~~~~~-~l~~Gd~Viv~~~~y~~~~~~~~~~~~~  111 (377)
T PRK07671         48 GNPTRAALEELIAVLEGGHAGFAFGSGM---------------AAITAVMM-LFSSGDHVILTDDVYGGTYRVMTKVLNR  111 (377)
T ss_pred             CChHHHHHHHHHHHHhCCCceEEeCCHH---------------HHHHHHHH-HhCCCCEEEECCCccchHHHHHHHHHhc
Confidence            3566666666677767666777678766               43333332 3455677877665433 34444455555


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhccc-CCeEEEEecccC
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIR-VGGIIVIDNVLW  247 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLk-pgG~ivid~vl~  247 (294)
                      .|.  ++.++..+-.+.+.+.+    .....+|++..+  +......++.+.++.+ .|..+++|+...
T Consensus       112 ~G~--~v~~v~~~d~~~l~~ai----~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~  174 (377)
T PRK07671        112 FGI--EHTFVDTSNLEEVEEAI----RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFM  174 (377)
T ss_pred             CCe--EEEEECCCCHHHHHHhc----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence            564  24444332223333322    234578886533  1111222333444333 367788888753

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=80.84  E-value=6.6  Score=36.99  Aligned_cols=92  Identities=17%  Similarity=0.225  Sum_probs=51.6

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      .||+-+|.|+.=  .         ---++.-+-+-+|+++.++-.|+.+-             +++.-..+.+|......
T Consensus        63 MrVlHlGAgSdk--G---------vaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc~t~~~  118 (299)
T PF06460_consen   63 MRVLHLGAGSDK--G---------VAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDCRTYMP  118 (299)
T ss_dssp             -EEEEES---TT--S---------B-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-GGGEEE
T ss_pred             cEEEEecccccC--C---------cCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccccccCC
Confidence            499999998511  0         02356677888998998988888763             33444566788766532


Q ss_pred             HHhhcCCCCceeEEEEcCC-------------ccchHH-HHHHHHhcccCCeEEEEe
Q 022597          201 ALILNGEASSYDFAFVDAE-------------KRMYQE-YFELLLQLIRVGGIIVID  243 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~-------------~~~~~~-~~~~~~~lLkpgG~ivid  243 (294)
                             +.++|+||.|-.             ++.+-. +...+...|+-||.+.+-
T Consensus       119 -------~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK  168 (299)
T PF06460_consen  119 -------PDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK  168 (299)
T ss_dssp             -------SS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -------CCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence                   589999999854             122323 334445789999999874

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=80.78  E-value=4.4  Score=39.88  Aligned_cols=61  Identities=20%  Similarity=0.242  Sum_probs=48.6

Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEE-EcCC----ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAF-VDAE----KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vf-iD~~----~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      .++ +++++++++..+.+....    ++++|.+. +|+.    ...+.+.++.+.+.++|||.+++-+..-
T Consensus       272 ~~~-drv~i~t~si~~~L~~~~----~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~  337 (380)
T PF11899_consen  272 ARL-DRVRIHTDSIEEVLRRLP----PGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV  337 (380)
T ss_pred             cCC-CeEEEEeccHHHHHHhCC----CCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence            455 789999999999987652    68999864 5643    5667888899999999999999877743

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=80.77  E-value=18  Score=33.79  Aligned_cols=98  Identities=21%  Similarity=0.314  Sum_probs=58.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++++||-.|+|.+              |..+..++++.  +. +|++++.+++..+.++    +.|..   .++...-.+
T Consensus       175 ~~~~vlI~g~g~v--------------g~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~----~~g~~---~~~~~~~~~  231 (350)
T cd08240         175 ADEPVVIIGAGGL--------------GLMALALLKAL--GPANIIVVDIDEAKLEAAK----AAGAD---VVVNGSDPD  231 (350)
T ss_pred             CCCEEEEECCcHH--------------HHHHHHHHHHc--CCCeEEEEeCCHHHHHHHH----HhCCc---EEecCCCcc
Confidence            5568888888653              66777777776  35 7889998888776653    34542   222221111


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ....+.... .+.+|++|-..+.   ....+.+.+.|+++|.++.-
T Consensus       232 ~~~~~~~~~-~~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~  273 (350)
T cd08240         232 AAKRIIKAA-GGGVDAVIDFVNN---SATASLAFDILAKGGKLVLV  273 (350)
T ss_pred             HHHHHHHHh-CCCCcEEEECCCC---HHHHHHHHHHhhcCCeEEEE
Confidence            112121111 2369998854432   23467778899999998853

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=80.76  E-value=15  Score=34.87  Aligned_cols=103  Identities=21%  Similarity=0.354  Sum_probs=61.5

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      ....++++||-.|+|.+              |..++.+++..  +. .|++++.+++..+.++    ..|..+-+.....
T Consensus       178 ~~~~~g~~vLI~g~g~v--------------G~a~i~lak~~--G~~~Vi~~~~~~~~~~~~~----~~g~~~vv~~~~~  237 (363)
T cd08279         178 ARVRPGDTVAVIGCGGV--------------GLNAIQGARIA--GASRIIAVDPVPEKLELAR----RFGATHTVNASED  237 (363)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCcEEEEcCCHHHHHHHH----HhCCeEEeCCCCc
Confidence            34456678888887642              77777788776  35 4889998888766553    3454321221122


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +..+.+..+.   +...+|+++--.+.   ...++.+.+.|+++|.++.-
T Consensus       238 ~~~~~l~~~~---~~~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~~  281 (363)
T cd08279         238 DAVEAVRDLT---DGRGADYAFEAVGR---AATIRQALAMTRKGGTAVVV  281 (363)
T ss_pred             cHHHHHHHHc---CCCCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEEE
Confidence            2322233221   13569977743332   24567788889999988753

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=80.46  E-value=19  Score=33.96  Aligned_cols=92  Identities=14%  Similarity=0.108  Sum_probs=55.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+++|+=+|.|.+              |......+..+  +++|+.+|.+++..+.+    +..|.    ++.  +. +.
T Consensus       151 ~g~kvlViG~G~i--------------G~~~a~~L~~~--Ga~V~v~~r~~~~~~~~----~~~G~----~~~--~~-~~  203 (296)
T PRK08306        151 HGSNVLVLGFGRT--------------GMTLARTLKAL--GANVTVGARKSAHLARI----TEMGL----SPF--HL-SE  203 (296)
T ss_pred             CCCEEEEECCcHH--------------HHHHHHHHHHC--CCEEEEEECCHHHHHHH----HHcCC----eee--cH-HH
Confidence            5689999999752              55555555554  57999999998765443    33343    222  11 22


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +.+.     -..+|+||.-.+..   -.-+...+.++||+++ +|-..
T Consensus       204 l~~~-----l~~aDiVI~t~p~~---~i~~~~l~~~~~g~vI-IDla~  242 (296)
T PRK08306        204 LAEE-----VGKIDIIFNTIPAL---VLTKEVLSKMPPEALI-IDLAS  242 (296)
T ss_pred             HHHH-----hCCCCEEEECCChh---hhhHHHHHcCCCCcEE-EEEcc
Confidence            2332     25799999865432   2234566778887654 44433

>PRK08324 short chain dehydrogenase; Validated

Probab=80.45  E-value=17  Score=38.07  Aligned_cols=82  Identities=18%  Similarity=0.168  Sum_probs=50.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++|-+|++                |..+..+++.+. .+.+|+.++.+++..+.+.+.+...   .++.++..|..+
T Consensus       421 ~gk~vLVTGas----------------ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd  481 (681)
T PRK08324        421 AGKVALVTGAA----------------GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTD  481 (681)
T ss_pred             CCCEEEEecCC----------------CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCC
Confidence            44788888864                555666665543 4679999999998776655544332   467788777643


Q ss_pred             h--HHHHhhcC--CCCceeEEEEcCC
Q 022597          198 S--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       198 ~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .  +.......  ..+.+|.||..++
T Consensus       482 ~~~v~~~~~~~~~~~g~iDvvI~~AG  507 (681)
T PRK08324        482 EAAVQAAFEEAALAFGGVDIVVSNAG  507 (681)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            2  22211100  1257899987765

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=80.43  E-value=30  Score=32.98  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=63.7

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ..+.++++|+-.|+|.+              |..+..++++.+ ..++++++.+++..+.+++    .|. ..+.....+
T Consensus       172 ~~~~~g~~vlI~g~g~v--------------g~~~~~~a~~~G-~~~vi~~~~~~~~~~~~~~----~g~-~~v~~~~~~  231 (375)
T cd08282         172 AGVQPGDTVAVFGAGPV--------------GLMAAYSAILRG-ASRVYVVDHVPERLDLAES----IGA-IPIDFSDGD  231 (375)
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCC-eEeccCccc
Confidence            34456677777888653              777777777653 2378889999887765543    343 112111112


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccc--------hHHHHHHHHhcccCCeEEEEecccC
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~--------~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      ..+.+..+   . ...+|++|--.+...        -...+..+.+.|+++|.++.-++..
T Consensus       232 ~~~~i~~~---~-~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~  288 (375)
T cd08282         232 PVEQILGL---E-PGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYV  288 (375)
T ss_pred             HHHHHHHh---h-CCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccC
Confidence            22222222   1 246898876544321        1234777889999999997665543

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>PRK05967 cystathionine beta-lyase; Provisional

Probab=80.42  E-value=42  Score=33.10  Aligned_cols=123  Identities=13%  Similarity=0.144  Sum_probs=70.8

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHH-HHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYER  181 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~-~~~A~~~~~~  181 (294)
                      -.|-...+-..++.+.++...+-+.+|+               +.....+...+.++.+|+..+..-.. ...+++.+++
T Consensus        62 gnPt~~~Le~~la~le~~~~~v~~sSG~---------------aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~  126 (395)
T PRK05967         62 GTPTTDALCKAIDALEGSAGTILVPSGL---------------AAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKR  126 (395)
T ss_pred             CChHHHHHHHHHHHHhCCCCEEEECcHH---------------HHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHh
Confidence            3454444444455555566667777766               44444444446667788877655433 3455667777


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEeccc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVL  246 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl  246 (294)
                      .|.  +++++..+..+.+++..    ...-.+|++..+  +......++.+.++.+. |.++++|++.
T Consensus       127 ~Gi--~v~~vd~~~~e~l~~al----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~  188 (395)
T PRK05967        127 LGV--EVEYYDPEIGAGIAKLM----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW  188 (395)
T ss_pred             cCe--EEEEeCCCCHHHHHHhc----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence            776  36666433234344432    244678888753  23345556666666665 5677888874

>TIGR00936 ahcY adenosylhomocysteinase

Probab=80.40  E-value=10  Score=37.76  Aligned_cols=88  Identities=11%  Similarity=0.098  Sum_probs=55.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+++|+-+|+|.+              |......++.+  +++|+.+|.++.....|.    ..|.    ++.  +..+
T Consensus       193 l~Gk~VvViG~G~I--------------G~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~----~~G~----~v~--~lee  246 (406)
T TIGR00936       193 IAGKTVVVAGYGWC--------------GKGIAMRARGM--GARVIVTEVDPIRALEAA----MDGF----RVM--TMEE  246 (406)
T ss_pred             CCcCEEEEECCCHH--------------HHHHHHHHhhC--cCEEEEEeCChhhHHHHH----hcCC----EeC--CHHH
Confidence            46789999999764              66666666655  579999999997543332    2243    222  2222


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHH-HHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~-~~~~lLkpgG~ivid  243 (294)
                      .   +      ...|++|.-.+.   ...+. .....+|+|++++.-
T Consensus       247 a---l------~~aDVVItaTG~---~~vI~~~~~~~mK~GailiN~  281 (406)
T TIGR00936       247 A---A------KIGDIFITATGN---KDVIRGEHFENMKDGAIVANI  281 (406)
T ss_pred             H---H------hcCCEEEECCCC---HHHHHHHHHhcCCCCcEEEEE
Confidence            1   1      346988765442   34444 367889999988754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=80.32  E-value=19  Score=32.85  Aligned_cols=99  Identities=16%  Similarity=0.192  Sum_probs=58.5

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-cch
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-gda  195 (294)
                      ..++.+++=.|+|.+              |.....++++.  +.+++.++.+++..+.+++    .|...-+.... .+.
T Consensus       158 ~~~g~~vli~g~g~~--------------g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~  217 (336)
T cd08276         158 LKPGDTVLVQGTGGV--------------SLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDW  217 (336)
T ss_pred             CCCCCEEEEECCcHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCH
Confidence            345556665566432              66666666665  5789999999887776654    24432222211 122


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+.+..+   .....+|+++-...    ...+..+.+.|+++|.++.
T Consensus       218 ~~~~~~~---~~~~~~d~~i~~~~----~~~~~~~~~~l~~~G~~v~  257 (336)
T cd08276         218 GEEVLKL---TGGRGVDHVVEVGG----PGTLAQSIKAVAPGGVISL  257 (336)
T ss_pred             HHHHHHH---cCCCCCcEEEECCC----hHHHHHHHHhhcCCCEEEE
Confidence            2223322   12346999885443    2346677899999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=80.23  E-value=54  Score=32.57  Aligned_cols=124  Identities=12%  Similarity=0.141  Sum_probs=68.2

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCCh-HHHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYER  181 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~-~~~~~A~~~~~~  181 (294)
                      -.|....+-..++...++..++=.++|+               +.....+...+.++.+|+..+..- ......+..++.
T Consensus        62 ~~p~~~~Le~~lA~leg~~~al~~~sG~---------------~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~  126 (431)
T PRK08248         62 MNPTTDVFEKRIAALEGGIGALAVSSGQ---------------AAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPK  126 (431)
T ss_pred             CCchHHHHHHHHHHHhCCCcEEEECCHH---------------HHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHh
Confidence            4566777777788888888888888866               554444444455567777665332 233444555666


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccC-CeEEEEecccC
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLW  247 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkp-gG~ivid~vl~  247 (294)
                      .|.  ++.++..+-.+.+++.+    .....+|++..+  +......++.+.++.+. |..+++|+..-
T Consensus       127 ~Gv--~v~~vd~~d~e~l~~ai----~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a  189 (431)
T PRK08248        127 LGI--TVKFVDPSDPENFEAAI----TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFA  189 (431)
T ss_pred             CCE--EEEEECCCCHHHHHHhc----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCC
Confidence            665  34444332223333332    245678877532  11111122334443333 56777888753

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=80.18  E-value=24  Score=31.45  Aligned_cols=101  Identities=18%  Similarity=0.177  Sum_probs=60.2

Q ss_pred             HhhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      ....++++|+=.|+ |.+              |.....+++..  +.++++++.+++..+.++    ..|...   ++..
T Consensus       132 ~~~~~g~~vlI~g~~g~~--------------g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~---~~~~  188 (320)
T cd05286         132 YPVKPGDTVLVHAAAGGV--------------GLLLTQWAKAL--GATVIGTVSSEEKAELAR----AAGADH---VINY  188 (320)
T ss_pred             cCCCCCCEEEEEcCCchH--------------HHHHHHHHHHc--CCEEEEEcCCHHHHHHHH----HCCCCE---EEeC
Confidence            34556678988884 321              77777777776  578999998888766553    345432   2222


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .-.+....+........+|++|--.+.    .....+.+.|+++|.++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~d~vl~~~~~----~~~~~~~~~l~~~g~~v~  233 (320)
T cd05286         189 RDEDFVERVREITGGRGVDVVYDGVGK----DTFEGSLDSLRPRGTLVS  233 (320)
T ss_pred             CchhHHHHHHHHcCCCCeeEEEECCCc----HhHHHHHHhhccCcEEEE
Confidence            111222222211123469999854432    345667888999998874

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=80.16  E-value=2.2  Score=39.14  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=21.0

Q ss_pred             CcEEEEEeCChHHHHHHHHHHHHh
Q 022597          159 SGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       159 ~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +-..+++|.+++.++.+.+.+...
T Consensus       244 ~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         244 GRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CCceEEEecCHHHHHHHHHHHHhh
Confidence            467899999999999999998864

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=80.05  E-value=35  Score=30.15  Aligned_cols=80  Identities=19%  Similarity=0.203  Sum_probs=44.6

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC--CCCcEEEEEeCC-------------------hHHHHHHH
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL--PESGCLVACERD-------------------ARSLEVAK  176 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~--~~~~~v~~id~~-------------------~~~~~~A~  176 (294)
                      ....+|+=+|||.                 .+-.++..+  ..-++++.+|.+                   ..-.+.+.
T Consensus        19 l~~~~VlviG~Gg-----------------lGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~   81 (202)
T TIGR02356        19 LLNSHVLIIGAGG-----------------LGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAA   81 (202)
T ss_pred             hcCCCEEEECCCH-----------------HHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHH
Confidence            3556899999964                 333333332  113689999987                   23345566


Q ss_pred             HHHHHhCCCCcEEEEEcchhh-hHHHHhhcCCCCceeEEEEcCC
Q 022597          177 KYYERAGVSHKVKIKHGLAAD-SLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       177 ~~~~~~gl~~~v~~~~gda~~-~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      +.+++.+..-+++.+.....+ .+..+     -..||+|+.-.+
T Consensus        82 ~~l~~~np~v~i~~~~~~i~~~~~~~~-----~~~~D~Vi~~~d  120 (202)
T TIGR02356        82 QRLRELNSDIQVTALKERVTAENLELL-----INNVDLVLDCTD  120 (202)
T ss_pred             HHHHHhCCCCEEEEehhcCCHHHHHHH-----HhCCCEEEECCC
Confidence            666665443344444433321 22333     257999876554

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
3cbg_A	232	Functional And Structural Characterization Of A Cat		3e-48
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		6e-43
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		6e-39
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		2e-37
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		4e-31
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		8e-30
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		1e-29
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		1e-21
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		1e-16
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		2e-15
3ntv_A	232	Crystal Structure Of A Putative Caffeoyl-Coa O-Meth		3e-09
3dr5_A	221	Crystal Structure Of The Q8nrd3_corgl Protein From		8e-05

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score =  188 bits (477), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 145/234 (61%), Gaps = 16/234 (6%)
Query: 62  NKQVISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
            K +    P LY Y+   +  +   L QLR ETA + G+ MQ+SP+QAQ L +L+ + GA
Sbjct: 14  GKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGA 73
Query: 121 QRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180
           ++ +E                    GYS+LA+AL LP  G ++AC++D  +  +AKKY++
Sbjct: 74  KQVLEIGVFR---------------GYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ 118
Query: 181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGII 240
           +AGV+ K+ ++ G A  +L+ L        +D  F+DA+KR Y  Y+E+ L L+R GG++
Sbjct: 119 KAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLM 178
Query: 241 VIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
           VIDNVLWHGKV +    +A+T  ++ FN++L +DERV IS++P+GDGMT+  K+
Sbjct: 179 VIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK 232

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score =  171 bits (432), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 90/229 (39%), Positives = 140/229 (61%), Gaps = 17/229 (7%)
Query: 68  VTPPLYDYILR-NVREPEILRQLREETA-GMRGSQMQVSPDQAQLLAMLVQILGAQRCIE 125
           +TP LY Y+L+ ++REP +L +LREET         Q +P+QAQLLA+LV++  A++ I+
Sbjct: 11  LTPELYQYLLQVSLREPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKKVID 70
Query: 126 XXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 185
                               GYS++A  L LP+ G L+ C+ D +S  +AK+Y+E+AG+S
Sbjct: 71  IGTFT---------------GYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLS 115
Query: 186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 245
            K+ ++   A D+L  LI  G+A  YD  ++DA+K     Y+E  L+L+R GG+I +DNV
Sbjct: 116 DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNV 175
Query: 246 LWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
           L  G+VAD+         IR FN+ + +DERV   ++PIGDG+T+ +K+
Sbjct: 176 LRRGQVADEENQSENNQLIRLFNQKVYKDERVDXILIPIGDGLTLARKK 224

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score =  157 bits (398), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 82/228 (35%), Positives = 131/228 (57%), Gaps = 16/228 (7%)
Query: 66  ISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           +S+TP LY Y+L  ++RE   L  LR+ET+ M  + MQV+P+QAQ + ML+++  A++ +
Sbjct: 6   LSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVL 65
Query: 125 EXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 184
           E                    GYS+LA++L LP+ G ++ C+ +    + A  Y+  A  
Sbjct: 66  ELGTFT---------------GYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ 110
Query: 185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244
            HK+K++ G A D+L +L+  G    +DF F+DA+K  Y  Y+EL L+L+   G+I IDN
Sbjct: 111 EHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDN 170
Query: 245 VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQ 292
           + W GKV D      +T  I+  N+ +  D RV +S++ I DGM + Q
Sbjct: 171 IFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQ 218

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 143/245 (58%), Gaps = 27/245 (11%)
Query: 62  NKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +++ IS+T  L +YI RN VREP+   +LR+ET  +  + MQ+SP++ Q L +L +I GA
Sbjct: 2   SRKNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGA 61
Query: 121 QRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180
           +R IE                    GYSSL  A  LPE G ++ C+       VA+KY++
Sbjct: 62  KRIIEIGTFT---------------GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWK 106
Query: 181 RAGVSHKVKIKHGLAADSLKALILNGEASSY--DFAF---------VDAEKRMYQEYFEL 229
             G+ +K+ +K G A ++L+ LI +  A S+  DFAF         +DA+K  Y  Y+ L
Sbjct: 107 ENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPL 166
Query: 230 LLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMT 289
           +L+L++ GG+++ DNVLW G VAD    +  T+ IR FN+ +  D  V +S+VPI DG++
Sbjct: 167 ILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVS 226
Query: 290 ICQKR 294
           + +KR
Sbjct: 227 LVRKR 231

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/234 (35%), Positives = 124/234 (52%), Gaps = 29/234 (12%)
Query: 72  LYDYILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEXXX 128
           LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++ A+  +E   
Sbjct: 29  LYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGV 88
Query: 129 XXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 188
                            GYS LA AL +PE G ++A + +  + E+     ++AGV HK+
Sbjct: 89  YT---------------GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKI 133
Query: 189 KIKHGLAADSLKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247
             + G A   L  +I + +   SYDF FVDA+K  Y  Y + L+ L++VGG+I  DN LW
Sbjct: 134 DFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLW 193
Query: 248 HGKVADQMVNDAK----TISIRNF----NKNLMEDERVSISMVPIGDGMTICQK 293
           +G V      DA         R+F    NK L  D R+ I M+P+GDG+TIC++
Sbjct: 194 NGSVV--APPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR 245

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score =  127 bits (319), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 129/239 (53%), Gaps = 20/239 (8%)
Query: 60  YSNKQVISVTPP----LYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
           +  ++   + PP    L+ Y+L R++RE   LR LR  T         ++ +QAQLLA L
Sbjct: 5   WRGRREQCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANL 64
Query: 115 VQILGAQRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEV 174
            +++ A++ ++                    GYS+LA+AL LP  G +V CE DA+  E+
Sbjct: 65  ARLIQAKKALDLGTFT---------------GYSALALALALPADGRVVTCEVDAQPPEL 109
Query: 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI 234
            +  + +A   HK+ ++   A ++L  L+  GEA ++D A VDA+K     Y+E  LQL+
Sbjct: 110 GRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLL 169
Query: 235 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
           R GGI+ +  VLW GKV      D     +RN N+ +  D RV IS++P+GDG+T+  K
Sbjct: 170 RPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 34/233 (14%)
Query: 75  YILRNV---REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEXXXXXX 131
           YILR     RE   L++LRE       S M  SP   QL++ +++++ A++ IE      
Sbjct: 23  YILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFT- 81
Query: 132 XXXXXXXXXXXXXXGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK 191
                         GYS L  AL +P+ G + A + D  + E+   +  +AGV HK+   
Sbjct: 82  --------------GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF- 126
Query: 192 HGLAADSLKAL--ILNGEAS--SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLW 247
             + +D++ AL  +L G+ S  SYDF FVDA+K  Y +Y E L++L++VGGI+  DN LW
Sbjct: 127 --IESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLW 184
Query: 248 HGKVA-------DQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
            G VA       D M  + +  ++   NK L  D R+ I  +P+GDG+T C++
Sbjct: 185 GGTVAQPESEVPDFMKENRE--AVIELNKLLAADPRIEIVHLPLGDGITFCRR 235

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 16/176 (9%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCL 162
           VSP Q + L +LVQI GA+  +E                    GYS++ +A  L   G +
Sbjct: 42  VSPTQGKFLQLLVQIQGARNILEIGTLG---------------GYSTIWLARGLSSGGRV 86
Query: 163 VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM 222
           V  E   +  ++A+   ERA ++ +V+++ GLA DSL+  I N +   +DF F+DA+K+ 
Sbjct: 87  VTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQ-IENEKYEPFDFIFIDADKQN 145
Query: 223 YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS 278
              YFE  L+L R G +I+ DNV+  G+V D   ND +   IR F + +  + RVS
Sbjct: 146 NPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVS 201

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 23/194 (11%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEXXXXXXXXXXXXXXXXXXXXGYSSLAIALVLPESGCL 162
           V+ +Q Q LA+LV++  A+R +E                    GYS++  A  LP  G L
Sbjct: 47  VAANQGQFLALLVRLTQAKRILEIGTLG---------------GYSTIWXARELPADGQL 91
Query: 163 VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM 222
           +  E DA   +VA++  + AGV  +V ++ G A  SL++L   GE  ++D  F+DA+K  
Sbjct: 92  LTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL---GECPAFDLIFIDADKPN 148
Query: 223 YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS-ISM 281
              Y    L+  R G +I+ DNV+  G+V +    D +   +R F +    + R++  ++
Sbjct: 149 NPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEXXGAEPRLTATAL 208
Query: 282 VPIG----DGMTIC 291
             +G    DG T+ 
Sbjct: 209 QTVGTKGWDGFTLA 222

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
           GYS++  A  LPE+  +V+ ERD R  E A K+ +  G+  ++++  G A    + L L 
Sbjct: 66  GYSAIRXAQALPEA-TIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELY 124
Query: 206 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK----T 261
                +D  F+DA K  Y+ +F+     +R GG+I+ DNVL+ G VA+  +   +     
Sbjct: 125 ---PLFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLFRGLVAETDIEHKRHKQLA 181
Query: 262 ISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
             I  +N+ L+E  +    + P+GDG+ I  KR
Sbjct: 182 TKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR 214

>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa O-Methyltransferase From Staphylococcus Aureus Length = 232

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 10/153 (6%)
Query: 146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 205
           GYSS   A +  +   +   ER+   ++ AK+        ++V+I  G A +  +    N
Sbjct: 83  GYSSXQFASI-SDDIHVTTIERNETXIQYAKQNLATYHFENQVRIIEGNALEQFE----N 137
Query: 206 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI--- 262
                YD  F+DA K   +++FE+   L++  G+++ DNVL+HG V+D  +  ++ +   
Sbjct: 138 VNDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQX 197
Query: 263 --SIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
              ++++N+ L++    + + + I DG+ I  K
Sbjct: 198 VKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK 230

>pdb|3DR5|A Chain A, Crystal Structure Of The Q8nrd3_corgl Protein From Corynebacterium Glutamicum. Northeast Structural Genomics Consortium Target Cgr117 Length = 221

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 184 VSHKVKIKHGLAADSLKALILNGEASSYDF-AFVDAEKRMYQEYFELLLQLIRVGGIIVI 242
           +S  + +   LA DS +  ++ G+ S  D  A VDA              L+R GG +V+
Sbjct: 115 LSRPLDVXSRLANDSYQ--LVFGQVSPXDLKALVDAA-----------WPLLRRGGALVL 161
Query: 243 DNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
            + L  G +ADQ   D  T + R+ ++ +   E   ++ +P+G G+T+  K
Sbjct: 162 ADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTK 212

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	1e-104
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	1e-101
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	1e-101
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	1e-100
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	6e-99
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	1e-98
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	2e-98
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	2e-97
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	5e-95
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	3e-90
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	2e-89
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	2e-88
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	3e-87
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	2e-81
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	4e-06
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	5e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	4e-05
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	4e-05
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	1e-04
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	2e-04
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	4e-04
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	6e-04

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  302 bits (775), Expect = e-104
 Identities = 97/244 (39%), Positives = 152/244 (62%), Gaps = 18/244 (7%)

Query: 54  SAHDEKYSN--KQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQL 110
           S H   + +  K +    P LY Y+      +   L QLR ETA + G+ MQ+SP+QAQ 
Sbjct: 4   SHHHHHHGSMGKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQF 63

Query: 111 LAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR 170
           L +L+ + GA++ +E+GV+                GYS+LA+AL LP  G ++AC++D  
Sbjct: 64  LGLLISLTGAKQVLEIGVFR---------------GYSALAMALQLPPDGQIIACDQDPN 108

Query: 171 SLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELL 230
           +  +AKKY+++AGV+ K+ ++ G A  +L+ L        +D  F+DA+KR Y  Y+E+ 
Sbjct: 109 ATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIG 168

Query: 231 LQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTI 290
           L L+R GG++VIDNVLWHGKV +    +A+T  ++ FN++L +DERV IS++P+GDGMT+
Sbjct: 169 LNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTL 228

Query: 291 CQKR 294
             K+
Sbjct: 229 ALKK 232

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  294 bits (755), Expect = e-101
 Identities = 85/234 (36%), Positives = 135/234 (57%), Gaps = 17/234 (7%)

Query: 61  SNKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILG 119
             K  +S+TP LY Y+L   +RE   L  LR+ET+ M  + MQV+P+QAQ + ML+++  
Sbjct: 2   VMKH-LSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTR 60

Query: 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY 179
           A++ +E+G +T               GYS+LA++L LP+ G ++ C+ +    + A  Y+
Sbjct: 61  AKKVLELGTFT---------------GYSALAMSLALPDDGQVITCDINEGWTKHAHPYW 105

Query: 180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI 239
             A   HK+K++ G A D+L +L+  G    +DF F+DA+K  Y  Y+EL L+L+   G+
Sbjct: 106 REAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGL 165

Query: 240 IVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
           I IDN+ W GKV D      +T  I+  N+ +  D RV +S++ I DGM + Q 
Sbjct: 166 IAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQP 219

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  294 bits (754), Expect = e-101
 Identities = 92/245 (37%), Positives = 144/245 (58%), Gaps = 27/245 (11%)

Query: 62  NKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +++ IS+T  L +YI RN VREP+   +LR+ET  +  + MQ+SP++ Q L +L +I GA
Sbjct: 2   SRKNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGA 61

Query: 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180
           +R IE+G +T               GYSSL  A  LPE G ++ C+       VA+KY++
Sbjct: 62  KRIIEIGTFT---------------GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWK 106

Query: 181 RAGVSHKVKIKHGLAADSLKALILNGEAS-----------SYDFAFVDAEKRMYQEYFEL 229
             G+ +K+ +K G A ++L+ LI +  A            S D  F+DA+K  Y  Y+ L
Sbjct: 107 ENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPL 166

Query: 230 LLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMT 289
           +L+L++ GG+++ DNVLW G VAD    +  T+ IR FN+ +  D  V +S+VPI DG++
Sbjct: 167 ILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVS 226

Query: 290 ICQKR 294
           + +KR
Sbjct: 227 LVRKR 231

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  292 bits (750), Expect = e-100
 Identities = 94/236 (39%), Positives = 148/236 (62%), Gaps = 18/236 (7%)

Query: 61  SNKQVISVTPPLYDYILRN-VREPEILRQLREETAG-MRGSQMQVSPDQAQLLAMLVQIL 118
           S      +TP LY Y+L+  +REP +L +LREET        MQ +P+QAQLLA+LV+++
Sbjct: 5   SINT-TLLTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLM 63

Query: 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY 178
            A++ I++G +T               GYS++A+ L LP+ G L+ C+ D +S  +AK+Y
Sbjct: 64  QAKKVIDIGTFT---------------GYSAIAMGLALPKDGTLITCDVDEKSTALAKEY 108

Query: 179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGG 238
           +E+AG+S K+ ++   A D+L  LI  G+A  YD  ++DA+K     Y+E  L+L+R GG
Sbjct: 109 WEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGG 168

Query: 239 IIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
           +I +DNVL  G+VAD+         IR FN+ + +DERV + ++PIGDG+T+ +K+
Sbjct: 169 LIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK 224

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  289 bits (741), Expect = 6e-99
 Identities = 83/248 (33%), Positives = 126/248 (50%), Gaps = 25/248 (10%)

Query: 55  AHDEKYSNKQVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLL 111
           A  ++  N   +  +  L  YILR     RE   L++LRE       S M  SP   QL+
Sbjct: 4   AVMKQVKNTG-LLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLM 62

Query: 112 AMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARS 171
           + +++++ A++ IEVGV+T               GYS L  AL +P+ G + A + D  +
Sbjct: 63  SFVLKLVNAKKTIEVGVFT---------------GYSLLLTALSIPDDGKITAIDFDREA 107

Query: 172 LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYDFAFVDAEKRMYQEYFELL 230
            E+   +  +AGV HK+      A  +L  L+   E+  SYDF FVDA+K  Y +Y E L
Sbjct: 108 YEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERL 167

Query: 231 LQLIRVGGIIVIDNVLWHGKVAD-----QMVNDAKTISIRNFNKNLMEDERVSISMVPIG 285
           ++L++VGGI+  DN LW G VA               ++   NK L  D R+ I  +P+G
Sbjct: 168 MKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLG 227

Query: 286 DGMTICQK 293
           DG+T C++
Sbjct: 228 DGITFCRR 235

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  288 bits (740), Expect = 1e-98
 Identities = 60/240 (25%), Positives = 112/240 (46%), Gaps = 24/240 (10%)

Query: 61  SNKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILG 119
             + +      + +Y+++  +    +L ++ E           V+ +Q Q LA+LV++  
Sbjct: 4   GKRHMQQQWSAVDNYLIKALIPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQ 63

Query: 120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY 179
           A+R +E+G                  GYS++ +A  LP  G L+  E DA   +VA++  
Sbjct: 64  AKRILEIGTLG---------------GYSTIWMARELPADGQLLTLEADAHHAQVARENL 108

Query: 180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGI 239
           + AGV  +V ++ G A  SL++L   GE  ++D  F+DA+K     Y    L+  R G +
Sbjct: 109 QLAGVDQRVTLREGPALQSLESL---GECPAFDLIFIDADKPNNPHYLRWALRYSRPGTL 165

Query: 240 IVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI-----GDGMTICQKR 294
           I+ DNV+  G+V +    D +   +R F + +  + R++ + +        DG T+    
Sbjct: 166 IIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAWVN 225

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  288 bits (738), Expect = 2e-98
 Identities = 82/239 (34%), Positives = 129/239 (53%), Gaps = 19/239 (7%)

Query: 59  KYSNKQVISVTP---PLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
               ++   + P    L+ Y+L   +RE   LR LR  T         ++ +QAQLLA L
Sbjct: 5   WRGRREQCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANL 64

Query: 115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV 174
            +++ A++ +++G +T               GYS+LA+AL LP  G +V CE DA+  E+
Sbjct: 65  ARLIQAKKALDLGTFT---------------GYSALALALALPADGRVVTCEVDAQPPEL 109

Query: 175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI 234
            +  + +A   HK+ ++   A ++L  L+  GEA ++D A VDA+K     Y+E  LQL+
Sbjct: 110 GRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLL 169

Query: 235 RVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
           R GGI+ +  VLW GKV      D     +RN N+ +  D RV IS++P+GDG+T+  K
Sbjct: 170 RPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 228

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  284 bits (730), Expect = 2e-97
 Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 22/235 (9%)

Query: 66  ISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           I     +  Y+    + +   L ++ +  A        VSP Q + L +LVQI GA+  +
Sbjct: 4   IETWTAVDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNIL 63

Query: 125 EVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 184
           E+G                  GYS++ +A  L   G +V  E   +  ++A+   ERA +
Sbjct: 64  EIGTLG---------------GYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL 108

Query: 185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 244
           + +V+++ GLA DSL+ +  N +   +DF F+DA+K+    YFE  L+L R G +I+ DN
Sbjct: 109 NDRVEVRTGLALDSLQQIE-NEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDN 167

Query: 245 VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI-----GDGMTICQKR 294
           V+  G+V D   ND +   IR F + +  + RVS + +        DG  +   +
Sbjct: 168 VVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVVK 222

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  279 bits (716), Expect = 5e-95
 Identities = 84/242 (34%), Positives = 129/242 (53%), Gaps = 25/242 (10%)

Query: 62  NKQVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQIL 118
             + +  +  LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++
Sbjct: 19  GHKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLI 78

Query: 119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY 178
            A+  +E+GVYT               GYS LA AL +PE G ++A + +  + E+    
Sbjct: 79  NAKNTMEIGVYT---------------GYSLLATALAIPEDGKILAMDINKENYELGLPV 123

Query: 179 YERAGVSHKVKIKHGLAADSLKALILNGEAS-SYDFAFVDAEKRMYQEYFELLLQLIRVG 237
            ++AGV HK+  + G A   L  +I + +   SYDF FVDA+K  Y  Y + L+ L++VG
Sbjct: 124 IKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG 183

Query: 238 GIIVIDNVLWHGKVADQMVNDAK------TISIRNFNKNLMEDERVSISMVPIGDGMTIC 291
           G+I  DN LW+G V        +         +   NK L  D R+ I M+P+GDG+TIC
Sbjct: 184 GVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITIC 243

Query: 292 QK 293
           ++
Sbjct: 244 RR 245

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  267 bits (684), Expect = 3e-90
 Identities = 48/248 (19%), Positives = 102/248 (41%), Gaps = 29/248 (11%)

Query: 53  SSAHDEKYSNKQVISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLL 111
              H      +    +      Y++  +  +   +  LRE           V      L+
Sbjct: 7   HHHHSSGLVPRG-SHMDDLNKKYLIDLHQHQNSSIEVLREFAEVNE--VPIVDRLTLDLI 63

Query: 112 AMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARS 171
             L+++   +  +E+G                  GYSS+  A  + +   +   ER+   
Sbjct: 64  KQLIRMNNVKNILEIGTAI---------------GYSSMQFAS-ISDDIHVTTIERNETM 107

Query: 172 LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL 231
           ++ AK+        ++V+I  G A +  + +        YD  F+DA K   +++FE+  
Sbjct: 108 IQYAKQNLATYHFENQVRIIEGNALEQFENV----NDKVYDMIFIDAAKAQSKKFFEIYT 163

Query: 232 QLIRVGGIIVIDNVLWHGKVADQMVNDAK-----TISIRNFNKNLMEDERVSISMVPIGD 286
            L++  G+++ DNVL+HG V+D  +  ++        ++++N+ L++    + + + I D
Sbjct: 164 PLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDD 223

Query: 287 GMTICQKR 294
           G+ I  K 
Sbjct: 224 GLAISIKG 231

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  265 bits (679), Expect = 2e-89
 Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 26/232 (11%)

Query: 68  VTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEV 126
           +   L  Y+ +      + + Q+  E    +   M       + L  L+++    R +E+
Sbjct: 4   IEERLKHYLEKQIPARDQYIEQMEREAHEQQVPIMD--LLGMESLLHLLKMAAPARILEI 61

Query: 127 GVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 186
           G                  GYS++ +A  LPE   +V+ ERD R  E A K+ +  G+  
Sbjct: 62  GTAI---------------GYSAIRMAQALPE-ATIVSIERDERRYEEAHKHVKALGLES 105

Query: 187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246
           ++++  G A    + L L      +D  F+DA K  Y+ +F++   ++R GG+I+ DNVL
Sbjct: 106 RIELLFGDALQLGEKLELYP---LFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVL 162

Query: 247 WHGKVAD----QMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
           + G VA+       +      I  +N+ L+E  +    + P+GDG+ I  KR
Sbjct: 163 FRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR 214

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  261 bits (670), Expect = 2e-88
 Identities = 39/227 (17%), Positives = 83/227 (36%), Gaps = 25/227 (11%)

Query: 68  VTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEV 126
           V   +  Y+         ++  + +           V     +LL +L +I   Q  +  
Sbjct: 6   VDSRIGAYLDGLLPEADPVVAAMEQIARERN--IPIVDRQTGRLLYLLARIKQPQLVVVP 63

Query: 127 GVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH 186
           G                  G +S   A  +  S  +V  + D  ++E A++     G+  
Sbjct: 64  GDGL---------------GCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLID 108

Query: 187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 246
           +V+++ G                  D  F+D +     +  E + + +    +++  N L
Sbjct: 109 RVELQVGDPLGIAAGQ------RDIDILFMDCDVFNGADVLERMNRCLAKNALLIAVNAL 162

Query: 247 WHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
             G VA+    D +T ++R FN +L        ++VP+G+G+ +  +
Sbjct: 163 RRGSVAES-HEDPETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYR 208

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  259 bits (663), Expect = 3e-87
 Identities = 45/232 (19%), Positives = 79/232 (34%), Gaps = 25/232 (10%)

Query: 67  SVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQIL---GAQRC 123
           +    L  Y+         + + RE+ A              QLL  L       G+   
Sbjct: 3   NAFEYLRTYVESTTETDAAVARAREDAAEF--GLPAPDEMTGQLLTTLAATTNGNGSTGA 60

Query: 124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG 183
           I +                   G   L I   L ++  L   + ++     AK  +  AG
Sbjct: 61  IAITPAA---------------GLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG 105

Query: 184 V-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242
               +V+       D +  L       SY   F        +   +    L+R GG +V+
Sbjct: 106 YSPSRVRFLLSRPLDVMSRL----ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVL 161

Query: 243 DNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
            + L  G +ADQ   D  T + R+ ++ +   E   ++ +P+G G+T+  K 
Sbjct: 162 ADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTKA 213

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  244 bits (624), Expect = 2e-81
 Identities = 41/227 (18%), Positives = 86/227 (37%), Gaps = 26/227 (11%)

Query: 72  LYDYILRNV--REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
           +  Y+ +N    +P+ + +  +     +   M V   + Q++  +++       +E+G Y
Sbjct: 9   ILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAY 68

Query: 130 TVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 189
                           GYS++ +A +L     L+  E +     + ++    AG+  KV 
Sbjct: 69  C---------------GYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVT 113

Query: 190 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELL--LQLIRVGGIIVIDNVLW 247
           I +G + D +  L    +  + D  F+D  K  Y     LL    L+R G +++ DNV+ 
Sbjct: 114 ILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIV 173

Query: 248 HGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
            G              +R  +          +  + + DG+     +
Sbjct: 174 PGTPDF-------LAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ 213

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.3 bits (158), Expect = 6e-12
 Identities = 45/308 (14%), Positives = 84/308 (27%), Gaps = 104/308 (33%)

Query: 10  FAFVLLKTEKTVAKF--------HSFPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYS 61
           F  +L K E+ V KF        + F L   ++      +  +  T         D  Y+
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQ---RQPSMMTRM--YIEQRDRLYN 121

Query: 62  NKQVISVTPPLYDYILRNVREPEI-------LRQLREETA----GMRGSQMQVSPDQAQL 110
           + QV             NV   +        L +LR        G+ GS          +
Sbjct: 122 DNQVF---AK------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW------V 166

Query: 111 LAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR 170
              +      Q  ++  ++ + + +                             C     
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKN-----------------------------CNSPET 197

Query: 171 SLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY---QEYF 227
            LE+ +K        +++       +D    + L   +       + AE R     + Y 
Sbjct: 198 VLEMLQKLL------YQIDPNWTSRSDHSSNIKLRIHS-------IQAELRRLLKSKPYE 244

Query: 228 ELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI------SIRNFNKNLMEDERVSISM 281
             LL         V+ NV  + K  +      K +       + +F   L       IS+
Sbjct: 245 NCLL---------VLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDF---LSAATTTHISL 291

Query: 282 VPIGDGMT 289
                 +T
Sbjct: 292 DHHSMTLT 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 44/320 (13%), Positives = 81/320 (25%), Gaps = 105/320 (32%)

Query: 1   MA----SSLVANRFAFVLLKTEKTVAKFHSFPL---------SERLRLRPCKFKTKNQFT 47
           +     + +  +     +  + K   K   F +         S    L   + K   Q  
Sbjct: 158 VLGSGKTWVALD-----VCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQ-KLLYQID 210

Query: 48  TNCCVSSAHDEKY-----SNKQVISVTPPLYDY-----ILRNVREPEILRQLREETAGMR 97
            N    S H         S +  +        Y     +L NV+  +             
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------- 262

Query: 98  GSQMQVSPD-QAQLL-----AMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLA 151
                   +   ++L       +   L A     + +    ++     + SL   Y    
Sbjct: 263 --------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 152 IALVLPESGCLV---ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 208
               LP              A S+      ++          KH +  D L  +I     
Sbjct: 315 PQD-LPREVLTTNPRRLSIIAESIRDGLATWDN--------WKH-VNCDKLTTII----E 360

Query: 209 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV---------LWHGK-------VA 252
           SS +     AE   Y++ F+ L         +   +          +W          V 
Sbjct: 361 SSLN-VLEPAE---YRKMFDRL--------SVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

Query: 253 DQMVN------DAK--TISI 264
           +++          K  TISI
Sbjct: 409 NKLHKYSLVEKQPKESTISI 428

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 46.0 bits (108), Expect = 4e-06
 Identities = 19/157 (12%), Positives = 41/157 (26%), Gaps = 16/157 (10%)

Query: 125 EVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 184
                           +      ++  +     +       E +    +  + +  R   
Sbjct: 51  HALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDE--HWIIECNDGVFQRLRDWAPRQT- 107

Query: 185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE--------YFELLLQLIRV 236
            HKV    GL  D    L        +D    D      +               +L++ 
Sbjct: 108 -HKVIPLKGLWEDVAPTL----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 162

Query: 237 GGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME 273
           GG++   N+   G++     +D   +        L+E
Sbjct: 163 GGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLE 199

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 24/154 (15%)

Query: 89  LREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYS 148
           L +E   M+     V P  +  +AM++ +    R I+ GV                SG  
Sbjct: 82  LIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGV---------------GSGAM 126

Query: 149 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 208
              +A  +  SG + A E+     ++A+    + G+  +V IK    ++         + 
Sbjct: 127 CAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-------GFDE 179

Query: 209 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242
              D  F+D        Y +   + ++ GG    
Sbjct: 180 KDVDALFLDVPDP--WNYIDKCWEALKGGGRFAT 211

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 15/112 (13%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 145 SGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 204
           +G  +  +A ++ E+G +   +   +++    K      +  +V +      +  K +  
Sbjct: 33  NGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDC 92

Query: 205 NGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDNVLWHG 249
             +A  ++  ++ +             +     ++L+  GGII +  V+++G
Sbjct: 93  PVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV--VIYYG 142

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 24/145 (16%), Positives = 56/145 (38%), Gaps = 18/145 (12%)

Query: 145 SGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 204
           +G  +L +A  +     + A +R+  ++   +   +R G+   V +  G A ++L  +  
Sbjct: 44  TGGVTLELAGRVRR---VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI-- 98

Query: 205 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISI 264
                  D A V       QE   ++   ++ GG I++  +L      +      + +  
Sbjct: 99  ----PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL-----LETKFEAMECLRD 149

Query: 265 RNFNKNLMEDERVSIS-MVPIGDGM 288
             F+ N+     ++I+    +  G 
Sbjct: 150 LGFDVNIT---ELNIARGRALDRGT 171

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 41.9 bits (98), Expect = 1e-04
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 24/154 (15%)

Query: 89  LREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYS 148
           + +    M+     V P  A L+     I      +E GV                SG  
Sbjct: 63  IVDYLDKMKRGPQIVHPKDAALIVAYAGISPGDFIVEAGV---------------GSGAL 107

Query: 149 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 208
           +L +A ++   G +V+ E      ++A +  + AG   +V IK     + +       E 
Sbjct: 108 TLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI-------EE 160

Query: 209 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242
            + D   +D  +   +   E   + ++ GG  V 
Sbjct: 161 ENVDHVILDLPQP--ERVVEHAAKALKPGGFFVA 192

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 140 ILSLFSGYSSLAI-ALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 198
           +  + +G +S++I A  L  +G + A ER+ + L   +   ++    + V +    A + 
Sbjct: 44  MWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARN-VTLVEAFAPEG 102

Query: 199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242
           L  L         D  F+     M +E  + + + ++  G+IV+
Sbjct: 103 LDDL------PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVL 140

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 32/186 (17%), Positives = 53/186 (28%), Gaps = 40/186 (21%)

Query: 57  DEKYSNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQ 116
           DE   + +   V+     Y  R +R               R +Q+    D + ++     
Sbjct: 64  DELIVSGKSFIVSDFSPMYFGRVIR---------------RNTQIISEIDASYIIMRC-G 107

Query: 117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK 176
           +      +EVGV                SG  S  I   L   G L   ERD  +L+ A 
Sbjct: 108 LRPGMDILEVGVG---------------SGNMSSYILYALNGKGTLTVVERDEDNLKKAM 152

Query: 177 KYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRV 236
                      V+      AD             YD    D        + + +  +++ 
Sbjct: 153 DNLSEFYDIGNVRTSRSDIAD-------FISDQMYDAVIADI--PDPWNHVQKIASMMKP 203

Query: 237 GGIIVI 242
           G +   
Sbjct: 204 GSVATF 209

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 9/98 (9%)

Query: 145 SGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 204
            G  S+++   L   G  +  E  A  +E  +K  +  G+S +++   G A  +L  L  
Sbjct: 64  GGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL-- 120

Query: 205 NGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242
                  +  F+       Q  ++ L + +  G  IV 
Sbjct: 121 ----PLPEAVFIGGGGS--QALYDRLWEWLAPGTRIVA 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	100.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	100.0
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	100.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	100.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	100.0
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	100.0
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	100.0
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	100.0
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	100.0
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	100.0
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	100.0
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.97
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.96
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.95
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.8
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.73
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.72
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.71
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.69
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.64
2o07_A	304	Spermidine synthase; structural genomics, structur	99.63
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.59
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.59
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.59
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.59
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.58
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.58
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.58
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.57
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.57
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.56
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.56
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.55
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.54
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.54
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.53
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.52
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.52
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.52
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.51
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.51
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.5
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.5
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.5
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.5
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.5
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.5
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.49
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.49
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.49
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.48
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.47
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.47
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.46
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.46
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.46
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.46
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.45
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.44
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.44
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.44
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.44
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.44
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.44
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.43
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.43
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.42
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.42
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.42
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.42
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.41
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.41
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.41
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.41
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.41
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.4
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.4
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.4
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.39
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.39
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.39
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.39
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.39
3ocj_A	305	Putative exported protein; structural genomics, PS	99.39
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.38
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.38
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.38
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.38
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.38
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.38
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.38
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.38
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.38
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.37
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.37
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.37
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.37
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.37
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.37
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.37
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.36
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.35
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.35
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.34
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.34
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.34
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.33
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.33
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.33
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.33
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.33
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.33
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.33
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.33
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.33
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.33
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.33
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.32
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.32
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.32
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.32
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.32
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.32
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.32
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.32
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.32
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.31
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.3
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.3
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.3
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	99.29
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.29
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.29
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.29
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.29
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.29
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.28
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.28
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.28
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.28
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.28
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.27
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.27
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.27
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.27
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.27
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.26
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.26
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.26
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.26
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.26
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.26
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.25
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.25
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.25
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.25
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.25
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.25
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.24
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.24
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.24
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.24
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.23
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.23
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.23
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.23
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.23
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.22
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.22
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.21
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.21
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.21
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.21
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.21
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.21
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.2
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.2
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.2
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.2
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.2
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.19
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.19
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.19
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.19
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.18
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.18
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.18
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.17
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.17
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.16
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.15
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.15
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.15
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.15
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.15
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.15
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.14
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.14
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.13
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.13
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.13
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.12
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.12
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.12
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.12
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.12
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.12
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.11
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.1
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.1
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.09
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.09
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.09
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.09
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.08
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.08
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.08
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.08
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.07
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.06
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.06
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.06
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.05
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.05
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.01
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.01
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.0
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.0
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.99
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.98
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.94
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.93
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.93
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.92
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.92
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.92
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.9
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.9
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.89
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.89
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.88
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.88
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.87
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.85
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.84
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.84
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.84
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.83
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.82
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.81
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.79
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.79
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.78
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.76
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.75
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.74
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.73
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.72
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.72
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.67
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.67
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.65
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.62
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.62
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.61
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.58
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.57
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.55
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.52
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.52
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.5
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.5
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.48
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.48
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.43
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.43
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.41
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.4
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.39
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.34
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.33
3khk_A	544	Type I restriction-modification system methylation	98.31
3lkd_A	542	Type I restriction-modification system methyltrans	98.26
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.24
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.1
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.05
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.79
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.47
3ufb_A	530	Type I restriction-modification system methyltran	97.43
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.31
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.28
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.1
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.06
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.86
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.77
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.76
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.69
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.66
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.64
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.57
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.51
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.44
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.44
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.43
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	96.42
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.42
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.38
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.35
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	96.35
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.32
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.3
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.29
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.28
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.27
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.27
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.25
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.23
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.22
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.18
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.18
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.17
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.15
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.1
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	96.03
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.03
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.02
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.96
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.92
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.91
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.9
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.89
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.84
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.79
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.75
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.7
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.66
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	95.64
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.6
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.6
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.59
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	95.59
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	95.58
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.53
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.52
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.47
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.47
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.44
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.42
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.4
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.36
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.36
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.26
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.25
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	95.16
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.1
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.88
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.88
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	94.83
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.81
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	94.81
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.75
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	94.75
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	94.69
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	94.54
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.53
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.4
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	94.2
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.2
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	94.1
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.01
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	93.83
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.82
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.79
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.7
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	93.64
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.54
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	93.44
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.36
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	93.24
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	92.87
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	92.61
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.52
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.47
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	92.42
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	92.29
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.13
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	92.05
3me5_A	482	Cytosine-specific methyltransferase; structural ge	91.93
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.9
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.82
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.58
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.57
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	91.37
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.36
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	91.27
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.93
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	90.72
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	90.71
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.65
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	90.64
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	90.54
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	90.46
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.37
4ezb_A	317	Uncharacterized conserved protein; structural geno	90.29
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	90.0
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	89.84
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	89.59
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	89.27
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	88.83
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	88.82
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	88.5
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.31
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	88.21
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	88.09
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	88.09
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	88.03
1lnq_A	336	MTHK channels, potassium channel related protein;	87.96
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	87.75
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	87.68
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	87.19
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	86.9
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	86.49
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	86.49
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	86.48
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	86.38
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	86.34
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	86.33
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	86.33
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	86.31
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	85.88
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	85.76
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	85.64
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	85.61
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	85.46
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	85.45
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	85.37
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	85.28
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	85.25
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	84.65
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	84.07
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	83.96
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	83.85
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.84
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	83.59
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	83.19
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	83.17
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	83.12
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	83.09
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	83.07
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	83.04
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	82.82
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	82.71
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	82.69
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	82.61
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	82.26
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	82.09
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	81.87
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	81.74
3i42_A	127	Response regulator receiver domain protein (CHEY-	81.67
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	81.31
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	81.23
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	81.2
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	81.16
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	81.1
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	81.09
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	80.98
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	80.95
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	80.77
3grc_A	140	Sensor protein, kinase; protein structure initiati	80.71
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	80.7
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	80.6
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	80.22

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=100.00  E-value=2e-37  Score=279.63  Aligned_cols=216  Identities=39%  Similarity=0.711  Sum_probs=199.1

Q ss_pred             cccCCChhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEcccccccccccccccc
Q 022597           64 QVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILS  142 (294)
Q Consensus        64 ~~~~l~~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~  142 (294)
                      ..+.+++.+++|+.++ ..+++.++++++.+.....+.|.+++.++++|..++...++++|||||||+            
T Consensus         4 ~~~~~~~~~~~Y~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~------------   71 (242)
T 3r3h_A            4 KHLSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFT------------   71 (242)
T ss_dssp             CCCCCCHHHHHHHHHHHCCCCHHHHHHHHTTSSSGGGGTSCCHHHHHHHHHHHHHHTCSEEEEEESCC------------
T ss_pred             CcccCCHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCCCccCHHHHHHHHHHHhhcCcCEEEEeeCCc------------
Confidence            4566889999999997 577899999999887776667889999999999999999999999999999            


Q ss_pred             CCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc
Q 022597          143 LFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM  222 (294)
Q Consensus       143 ~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~  222 (294)
                         |+++++++..++++++|+++|+++++++.|+++++.+|+.++++++.+|+.+.++.+...+..++||+||+|+++..
T Consensus        72 ---G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~~  148 (242)
T 3r3h_A           72 ---GYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKTN  148 (242)
T ss_dssp             ---SHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGGG
T ss_pred             ---CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChHH
Confidence               99999999998878999999999999999999999999998999999999988876643322478999999999999


Q ss_pred             hHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          223 YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       223 ~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      +..+++.+.++|+|||++++||++|+|.+.++...++.+.++++|++.+.++|+++++++|+|||+++++||
T Consensus       149 ~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~  220 (242)
T 3r3h_A          149 YLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFLVQPI  220 (242)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEEESSSSCEEEEEEC
T ss_pred             hHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEEEEEEEccCceEEEEEc
Confidence            999999999999999999999999999999988888889999999999999999999999999999999986

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=1.8e-36  Score=270.22  Aligned_cols=203  Identities=22%  Similarity=0.328  Sum_probs=187.8

Q ss_pred             hhHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCC---eEEEEccccccccccccccccCCCc
Q 022597           70 PPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQ---RCIEVGVYTVCVSSYSTSILSLFSG  146 (294)
Q Consensus        70 ~~l~~Y~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~---~vLEiG~g~~~~~~~~~~~~~~~aG  146 (294)
                      +.+.+|+.++.++++.++++++.+....  .+.++|.++++|..++...+++   +|||||||+               |
T Consensus         6 ~~~~~y~~~~~~~~~~l~~~~~~a~~~~--~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~---------------G   68 (221)
T 3dr5_A            6 EYLRTYVESTTETDAAVARAREDAAEFG--LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAA---------------G   68 (221)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTH---------------H
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCc---------------h
Confidence            5678999998888999999999987764  3467999999999999999988   999999999               9


Q ss_pred             HHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC-CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHH
Q 022597          147 YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE  225 (294)
Q Consensus       147 ~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~  225 (294)
                      +++++++..++++++|+++|+++++++.|+++++++|+. ++++++.+|+.+.++.+.    .++||+||+|+++..|.+
T Consensus        69 ~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~----~~~fD~V~~d~~~~~~~~  144 (221)
T 3dr5_A           69 LVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA----NDSYQLVFGQVSPMDLKA  144 (221)
T ss_dssp             HHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC----TTCEEEEEECCCTTTHHH
T ss_pred             HHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc----CCCcCeEEEcCcHHHHHH
Confidence            999999999987899999999999999999999999998 899999999988765441    478999999999999999


Q ss_pred             HHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 022597          226 YFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK  293 (294)
Q Consensus       226 ~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k  293 (294)
                      +++.+.++|+|||++++||++|+|.+.++...++.+.++++|++.+.++|+++++++|+|||+++++|
T Consensus       145 ~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~~~~  212 (221)
T 3dr5_A          145 LVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTK  212 (221)
T ss_dssp             HHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEEEEE
T ss_pred             HHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchHHHHHH
Confidence            99999999999999999999999999998878888889999999999999999999999999999997

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=100.00  E-value=2.5e-35  Score=264.45  Aligned_cols=216  Identities=38%  Similarity=0.647  Sum_probs=194.2

Q ss_pred             cccCCChhHHHHHHhc-C--CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEcccccccccccccc
Q 022597           64 QVISVTPPLYDYILRN-V--REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSI  140 (294)
Q Consensus        64 ~~~~l~~~l~~Y~~~~-~--~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~  140 (294)
                      +.+.+++.+++|+.++ .  ++++.|.++++.+..+..+.|.+++.+++++..++...++++|||||||+          
T Consensus        12 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~----------   81 (237)
T 3c3y_A           12 TGLLQSEELCQYILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFT----------   81 (237)
T ss_dssp             -CCBSCHHHHHHHHHHHTGGGSCHHHHHHHHHHTTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTT----------
T ss_pred             cccCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCCCEEEEeCCCC----------
Confidence            5577889999999986 2  67899999999988876668899999999999999999999999999999          


Q ss_pred             ccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcC-CCCceeEEEEcCC
Q 022597          141 LSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAE  219 (294)
Q Consensus       141 ~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~-~~~~fD~vfiD~~  219 (294)
                           |++++++++.++++++|+++|+++++++.|+++++++|+.++++++.+|+.+.++.+...+ ..++||+||+|++
T Consensus        82 -----G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~  156 (237)
T 3c3y_A           82 -----GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD  156 (237)
T ss_dssp             -----SHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred             -----CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence                 9999999999987899999999999999999999999998899999999999887765433 2478999999999


Q ss_pred             ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCc-----chHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          220 KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA-----KTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       220 ~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~-----~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      +..|..+++.+.++|+|||++++||++|+|.+.++...+.     ....+++|++.+.++|+++++++|++||+++++|+
T Consensus       157 ~~~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~~~~~~  236 (237)
T 3c3y_A          157 KPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRRL  236 (237)
T ss_dssp             GGGHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCceEEEEEc
Confidence            9999999999999999999999999999999987743332     24588899999999999999999999999999996

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=100.00  E-value=4.6e-35  Score=261.30  Aligned_cols=226  Identities=42%  Similarity=0.791  Sum_probs=198.5

Q ss_pred             cccccccccccccCCChhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEcccccc
Q 022597           54 SAHDEKYSNKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVC  132 (294)
Q Consensus        54 ~~~~~~~~~~~~~~l~~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~  132 (294)
                      .||---++.+....+++.+++|+.+. ..+++.+.++++.+.....+.|.++|.+++++..++...++++|||||||+  
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~--   83 (232)
T 3cbg_A            6 HHHHHGSMGKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFR--   83 (232)
T ss_dssp             ---------CCBTTSCHHHHHHHHHTSCCCCHHHHHHHHHTTTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCTT--
T ss_pred             ccccccccccccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHhcCCCEEEEecCCC--
Confidence            45555677788888999999999998 567899999999887766666789999999999999999999999999999  


Q ss_pred             ccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee
Q 022597          133 VSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  212 (294)
Q Consensus       133 ~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD  212 (294)
                                   |+++++++..++++++|+++|+++++++.|+++++.+|+.++++++.+|+.+.++.+......++||
T Consensus        84 -------------G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           84 -------------GYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             -------------SHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             -------------CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence                         9999999999877789999999999999999999999998899999999988877664321127899


Q ss_pred             EEEEcCCccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEE
Q 022597          213 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQ  292 (294)
Q Consensus       213 ~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~  292 (294)
                      +||+|+++..|..+++.+.++|+|||+++++|++|.|.+.++...++.+..+++|++.+.++|++.++++|++||+++++
T Consensus       151 ~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~  230 (232)
T 3cbg_A          151 LIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQEAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLAL  230 (232)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECSBTCEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccCChHHHHHHHHHHHHhhCCCeEEEEEEcCCeEEEEE
Confidence            99999999999999999999999999999999999999998877778889999999999999999999999999999999


Q ss_pred             EC
Q 022597          293 KR  294 (294)
Q Consensus       293 k~  294 (294)
                      ||
T Consensus       231 ~~  232 (232)
T 3cbg_A          231 KK  232 (232)
T ss_dssp             EC
T ss_pred             eC
Confidence            96

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=100.00  E-value=2.7e-35  Score=266.43  Aligned_cols=217  Identities=39%  Similarity=0.670  Sum_probs=194.9

Q ss_pred             ccccCCChhHHHHHHhc---CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccc
Q 022597           63 KQVISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTS  139 (294)
Q Consensus        63 ~~~~~l~~~l~~Y~~~~---~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~  139 (294)
                      .+.+.+++.+++|+.++   .++++.|+++++.+..+..+.|.++|.+++++..++...++++|||||||+         
T Consensus        20 ~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~---------   90 (247)
T 1sui_A           20 HKSLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYT---------   90 (247)
T ss_dssp             -CCSBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCGG---------
T ss_pred             cccCCchHHHHHHHHHcccCCCCCHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHhhCcCEEEEeCCCc---------
Confidence            35677899999999986   277899999999998876668899999999999999999999999999999         


Q ss_pred             cccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcC-CCCceeEEEEcC
Q 022597          140 ILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDA  218 (294)
Q Consensus       140 ~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~-~~~~fD~vfiD~  218 (294)
                            |+++++++..++++++|+++|+++++++.|+++++++|+.++++++.+|+.+.++.+...+ ..++||+||+|+
T Consensus        91 ------G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~  164 (247)
T 1sui_A           91 ------GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDA  164 (247)
T ss_dssp             ------GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECS
T ss_pred             ------CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcC
Confidence                  9999999999987899999999999999999999999998899999999998877653221 136899999999


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcc------hHHHHHHHHHhhhCCCeEEEEeecCCceEEEE
Q 022597          219 EKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK------TISIRNFNKNLMEDERVSISMVPIGDGMTICQ  292 (294)
Q Consensus       219 ~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~------~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~  292 (294)
                      ++..|..+++.+.++|+|||++++||++|+|.+.++...++.      +.++++|++.+.+++++.++++|++||+++++
T Consensus       165 ~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~l~~  244 (247)
T 1sui_A          165 DKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICR  244 (247)
T ss_dssp             CSTTHHHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHHHHHHHHHHHHHHHTCTTBCCEEECSTTCEEEEC
T ss_pred             chHHHHHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhHHHHHHHHHHHHHhhCCCeEEEEEecCCccEEEE
Confidence            999999999999999999999999999999999887654433      44899999999999999999999999999999


Q ss_pred             EC
Q 022597          293 KR  294 (294)
Q Consensus       293 k~  294 (294)
                      |+
T Consensus       245 k~  246 (247)
T 1sui_A          245 RI  246 (247)
T ss_dssp             BC
T ss_pred             Ec
Confidence            86

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=1e-33  Score=248.47  Aligned_cols=216  Identities=43%  Similarity=0.788  Sum_probs=196.8

Q ss_pred             cccCCChhHHHHHHhc-CCChHHHHHHHHHHH-cCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccc
Q 022597           64 QVISVTPPLYDYILRN-VREPEILRQLREETA-GMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSIL  141 (294)
Q Consensus        64 ~~~~l~~~l~~Y~~~~-~~~~~~L~~~~~~~~-~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~  141 (294)
                      ..+.+++.+.+|+.++ ..+++.++++++.+. .+..+.+.+++.+++++..++...++++|||+|||+           
T Consensus         7 ~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~-----------   75 (225)
T 3tr6_A            7 NTTLLTPELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFT-----------   75 (225)
T ss_dssp             CSCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHHHTCSEEEEECCTT-----------
T ss_pred             CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHhhCCCEEEEeCCcc-----------
Confidence            4566889999999997 456889999998877 666667889999999999999999999999999999           


Q ss_pred             cCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc
Q 022597          142 SLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR  221 (294)
Q Consensus       142 ~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~  221 (294)
                          |+.+++++..++++++|+++|+++++++.|+++++..|+.++++++++|+.+.++.+...+..++||+||+|++..
T Consensus        76 ----G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~~  151 (225)
T 3tr6_A           76 ----GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADKA  151 (225)
T ss_dssp             ----SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCGG
T ss_pred             ----hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCHH
Confidence                9999999999877899999999999999999999999999899999999988877664322227899999999999


Q ss_pred             chHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          222 MYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       222 ~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      .+..+++.+.++|+|||+++++|++|+|.+.++...++.+.++++|++.+.++|+++++++|+|||+++++||
T Consensus       152 ~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~~k~  224 (225)
T 3tr6_A          152 NTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK  224 (225)
T ss_dssp             GHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEEEEEcCCccEEEEEC
Confidence            9999999999999999999999999999999888777788899999999999999999999999999999996

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=100.00  E-value=3.7e-33  Score=245.49  Aligned_cols=213  Identities=38%  Similarity=0.648  Sum_probs=194.0

Q ss_pred             CCChhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCC
Q 022597           67 SVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFS  145 (294)
Q Consensus        67 ~l~~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~a  145 (294)
                      .+.+.+++|+.++ ..+++.++++++.+.......+.+++.+++++..++...++++|||+|||+               
T Consensus        16 ~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~---------------   80 (229)
T 2avd_A           16 PEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFT---------------   80 (229)
T ss_dssp             CTTSHHHHHHHHTTCCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTT---------------
T ss_pred             hhHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHhcCCCEEEEEcCCc---------------
Confidence            3677889999998 567899999999988766667899999999999999999999999999999               


Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHH
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE  225 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~  225 (294)
                      |+++++++..++++++|+++|+++++++.|+++++.+|+.++++++.+|+.+.++.+...+..++||+||+|+++..|..
T Consensus        81 G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~~~~~  160 (229)
T 2avd_A           81 GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSA  160 (229)
T ss_dssp             SHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHH
T ss_pred             cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHHHHHH
Confidence            99999999988767899999999999999999999999988999999999888776643222268999999999999999


Q ss_pred             HHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          226 YFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       226 ~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      +++.+.++|+|||+++++|++|+|.+.++...++.+..+++|++.+.++|+++++++|++||+++++|+
T Consensus       161 ~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dGl~~~~k~  229 (229)
T 2avd_A          161 YYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI  229 (229)
T ss_dssp             HHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEEEecCCceEEEEEC
Confidence            999999999999999999999999999887777888899999999999999999999999999999996

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=100.00  E-value=1.9e-32  Score=240.42  Aligned_cols=209  Identities=31%  Similarity=0.508  Sum_probs=191.5

Q ss_pred             hhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHH
Q 022597           70 PPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYS  148 (294)
Q Consensus        70 ~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~  148 (294)
                      +.+.+|+.++ ..+++.++++++.+.....+.|.+++.+++++..++...++++|||||||+               |++
T Consensus         8 ~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~---------------G~~   72 (223)
T 3duw_A            8 TAVDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLG---------------GYS   72 (223)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCSCSCCHHHHHHHHHHHHHHTCSEEEEECCTT---------------SHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhCCCEEEEecCCc---------------cHH
Confidence            4577899887 567899999999988877777889999999999999999999999999999               999


Q ss_pred             HHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHH
Q 022597          149 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFE  228 (294)
Q Consensus       149 sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~  228 (294)
                      +++++..++++++|+++|+++++++.|++++++.|+.++++++.+|+.+.++.+...+ .++||+||+|+.+..+..+++
T Consensus        73 ~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~fD~v~~d~~~~~~~~~l~  151 (223)
T 3duw_A           73 TIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEK-YEPFDFIFIDADKQNNPAYFE  151 (223)
T ss_dssp             HHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-CCCCSEEEECSCGGGHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC-CCCcCEEEEcCCcHHHHHHHH
Confidence            9999999887889999999999999999999999999899999999998877664321 267999999999999999999


Q ss_pred             HHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeec-----CCceEEEEEC
Q 022597          229 LLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPI-----GDGMTICQKR  294 (294)
Q Consensus       229 ~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~-----gdGl~i~~k~  294 (294)
                      .+.++|+|||+++++|++|+|.+.++...++....+++|++.+..+++++++++|+     +||+.++++|
T Consensus       152 ~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~dG~~~~~~~  222 (223)
T 3duw_A          152 WALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVVK  222 (223)
T ss_dssp             HHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             HHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEeccCCCCCCeeEEEEEe
Confidence            99999999999999999999999988877888889999999999999999999999     9999999985

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=100.00  E-value=1.6e-32  Score=244.66  Aligned_cols=211  Identities=22%  Similarity=0.353  Sum_probs=181.9

Q ss_pred             ccccccCCChhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccc
Q 022597           61 SNKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTS  139 (294)
Q Consensus        61 ~~~~~~~l~~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~  139 (294)
                      .......+++.+.+|+.+. ..+++.++++++......  .+.+.+.+++++..++...++++|||||||+         
T Consensus        14 ~~~~~~~~~~~l~~yl~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~---------   82 (232)
T 3ntv_A           14 LVPRGSHMDDLNKKYLIDLHQHQNSSIEVLREFAEVNE--VPIVDRLTLDLIKQLIRMNNVKNILEIGTAI---------   82 (232)
T ss_dssp             -------CHHHHHHHHHHHHGGGCCGGGGHHHHHHHTT--CCCCCHHHHHHHHHHHHHHTCCEEEEECCSS---------
T ss_pred             cccCCCCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHhhcCCCEEEEEeCch---------
Confidence            3335566889999999987 445677878887766543  3457899999999999999999999999999         


Q ss_pred             cccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH-HHhhcCCCCceeEEEEcC
Q 022597          140 ILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK-ALILNGEASSYDFAFVDA  218 (294)
Q Consensus       140 ~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~-~l~~~~~~~~fD~vfiD~  218 (294)
                            |+++++++...+ +++|+++|+++++++.|+++++..|+.++++++.+|+.+.++ .+     .++||+||+|+
T Consensus        83 ------G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~fD~V~~~~  150 (232)
T 3ntv_A           83 ------GYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN-----DKVYDMIFIDA  150 (232)
T ss_dssp             ------SHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT-----TSCEEEEEEET
T ss_pred             ------hHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc-----cCCccEEEEcC
Confidence                  999999999655 789999999999999999999999998899999999998877 55     57899999999


Q ss_pred             CccchHHHHHHHHhcccCCeEEEEecccCCCcccCccc-CCc----chHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 022597          219 EKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV-NDA----KTISIRNFNKNLMEDERVSISMVPIGDGMTICQK  293 (294)
Q Consensus       219 ~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~-~~~----~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k  293 (294)
                      ++..+..+++.+.++|+|||++++||++|+|.+.++.. .++    ...++++|++.+.++|+++++++|+|||++|++|
T Consensus       151 ~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~i~~k  230 (232)
T 3ntv_A          151 AKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK  230 (232)
T ss_dssp             TSSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEEECSTTCEEEEEE
T ss_pred             cHHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEEEEcCCceEEEEE
Confidence            99999999999999999999999999999999988754 222    2458999999999999999999999999999999


Q ss_pred             C
Q 022597          294 R  294 (294)
Q Consensus       294 ~  294 (294)
                      |
T Consensus       231 ~  231 (232)
T 3ntv_A          231 G  231 (232)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=100.00  E-value=1e-31  Score=242.14  Aligned_cols=207  Identities=29%  Similarity=0.509  Sum_probs=188.0

Q ss_pred             hhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHH
Q 022597           70 PPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYS  148 (294)
Q Consensus        70 ~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~  148 (294)
                      +.+.+|+.+. ..+++.++++++.+.....+.+.+++.+++++..++...++++|||||||+               |++
T Consensus        13 ~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~---------------G~~   77 (248)
T 3tfw_A           13 SAVDNYLIKALIPGDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLG---------------GYS   77 (248)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHTTCBSCCCCHHHHHHHHHHHHHHTCSEEEEECCTT---------------SHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHhhcCCCEEEEecCCc---------------hHH
Confidence            4567899876 556889999998887776667789999999999999999999999999999               999


Q ss_pred             HHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHH
Q 022597          149 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFE  228 (294)
Q Consensus       149 sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~  228 (294)
                      +++++..++++++|+++|+++++++.|+++++++|+.++++++.+|+.+.++.+.   ..++||+||+|+++..+..+++
T Consensus        78 ~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~---~~~~fD~V~~d~~~~~~~~~l~  154 (248)
T 3tfw_A           78 TIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG---ECPAFDLIFIDADKPNNPHYLR  154 (248)
T ss_dssp             HHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC---SCCCCSEEEECSCGGGHHHHHH
T ss_pred             HHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC---CCCCeEEEEECCchHHHHHHHH
Confidence            9999999887899999999999999999999999999899999999988776541   1358999999999999999999


Q ss_pred             HHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEe-ecC----CceEEEEEC
Q 022597          229 LLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMV-PIG----DGMTICQKR  294 (294)
Q Consensus       229 ~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~l-p~g----dGl~i~~k~  294 (294)
                      .+.++|+|||+++++|++|.|.+.++...++.+..+++|++.+.++|+++++++ |+|    ||+.|+++|
T Consensus       155 ~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~~DG~~i~~~~  225 (248)
T 3tfw_A          155 WALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATALQTVGTKGWDGFTLAWVN  225 (248)
T ss_dssp             HHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEEEECSTTCSEEEEEEEEC
T ss_pred             HHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEeecCCCCCCCeeEEEEEe
Confidence            999999999999999999999999888778888899999999999999999998 776    999999986

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=100.00  E-value=6.8e-31  Score=234.12  Aligned_cols=216  Identities=43%  Similarity=0.759  Sum_probs=192.3

Q ss_pred             cccCCChhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEcccccccccccccccc
Q 022597           64 QVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILS  142 (294)
Q Consensus        64 ~~~~l~~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~  142 (294)
                      ..+.+++.+++|+.++ .++++.+.++++.+.....+++.+.|.+++++..++...++++|||||||+            
T Consensus         4 ~~~~~~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~------------   71 (239)
T 2hnk_A            4 KNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFT------------   71 (239)
T ss_dssp             CSCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHTC---CCSCCHHHHHHHHHHHHHHTCSEEEEECCTT------------
T ss_pred             ccccchHHHHHHHHHccCCCCHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHhhCcCEEEEEeCCC------------
Confidence            3466788999999997 567899999999988877777899999999999999999999999999999            


Q ss_pred             CCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhc---------CCC--Cce
Q 022597          143 LFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN---------GEA--SSY  211 (294)
Q Consensus       143 ~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~---------~~~--~~f  211 (294)
                         |+.+..++..++++++|+++|+++++++.|+++++..|+.++++++.+|+.+.++.+...         .+.  ++|
T Consensus        72 ---G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~f  148 (239)
T 2hnk_A           72 ---GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSI  148 (239)
T ss_dssp             ---CHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCE
T ss_pred             ---CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCc
Confidence               999999999987678999999999999999999999999888999999998876654321         011  689


Q ss_pred             eEEEEcCCccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEE
Q 022597          212 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTIC  291 (294)
Q Consensus       212 D~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~  291 (294)
                      |+||++.....+..+++.+.++|+|||++++++++|.|.+.++...+..+..+++|++.+..++++.++++|++||+.++
T Consensus       149 D~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~  228 (239)
T 2hnk_A          149 DLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLV  228 (239)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEE
T ss_pred             CEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEEcCCceEee
Confidence            99999999999999999999999999999999999999998887666777899999999999999999999999999999


Q ss_pred             EEC
Q 022597          292 QKR  294 (294)
Q Consensus       292 ~k~  294 (294)
                      +|+
T Consensus       229 ~~~  231 (239)
T 2hnk_A          229 RKR  231 (239)
T ss_dssp             EEC
T ss_pred             eeh
Confidence            986

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.97  E-value=1.9e-30  Score=226.38  Aligned_cols=203  Identities=19%  Similarity=0.278  Sum_probs=173.7

Q ss_pred             CChhHHHHHHhcC-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCc
Q 022597           68 VTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSG  146 (294)
Q Consensus        68 l~~~l~~Y~~~~~-~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG  146 (294)
                      ..+.+++|+.++. .+++.+.++++.+....  .+.+++.+++++..++...++++|||||||+               |
T Consensus         6 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~l~~l~~~~~~~~vLdiG~G~---------------G   68 (210)
T 3c3p_A            6 VDSRIGAYLDGLLPEADPVVAAMEQIARERN--IPIVDRQTGRLLYLLARIKQPQLVVVPGDGL---------------G   68 (210)
T ss_dssp             BCHHHHHHHHHTSCSCCHHHHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHHCCSEEEEESCGG---------------G
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHHhhCCCEEEEEcCCc---------------c
Confidence            5678899999984 56788999998877653  3568999999999999989999999999999               9


Q ss_pred             HHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHH
Q 022597          147 YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY  226 (294)
Q Consensus       147 ~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~  226 (294)
                      +++++++..++++++|+++|+++++++.|+++++..|+.++++++.+|+.+.++.+     .+ ||+||+|..+..+..+
T Consensus        69 ~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~-fD~v~~~~~~~~~~~~  142 (210)
T 3c3p_A           69 CASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-----RD-IDILFMDCDVFNGADV  142 (210)
T ss_dssp             HHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-----CS-EEEEEEETTTSCHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-----CC-CCEEEEcCChhhhHHH
Confidence            99999999887689999999999999999999999999889999999998765543     35 9999999988899999


Q ss_pred             HHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          227 FELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       227 ~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      ++.+.++|+|||+++++|++|.|.+.++ ..++....+++|++.+.++|++.++++|++||+.+++|+
T Consensus       143 l~~~~~~LkpgG~lv~~~~~~~g~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~G~~~~~~~  209 (210)
T 3c3p_A          143 LERMNRCLAKNALLIAVNALRRGSVAES-HEDPETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL  209 (210)
T ss_dssp             HHHHGGGEEEEEEEEEESSSSCC-------------CCCHHHHHHTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHhcCCCeEEEEECccccCcccCc-ccchHHHHHHHHHHHHhhCCCeEEEEEecCCceEEEEeC
Confidence            9999999999999999999999998865 455566688999999999999999999999999999986

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.96  E-value=2e-27  Score=210.35  Aligned_cols=206  Identities=27%  Similarity=0.483  Sum_probs=166.1

Q ss_pred             CChhHHHHHHhcC-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCc
Q 022597           68 VTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSG  146 (294)
Q Consensus        68 l~~~l~~Y~~~~~-~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG  146 (294)
                      +++.+++|+.++. .+++.+.++++.+....  .+.+.|..++++..++...++.+|||+|||+               |
T Consensus         4 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~---------------G   66 (233)
T 2gpy_A            4 IEERLKHYLEKQIPARDQYIEQMEREAHEQQ--VPIMDLLGMESLLHLLKMAAPARILEIGTAI---------------G   66 (233)
T ss_dssp             -CHHHHHHHHTTCCCCCHHHHHHHHHHHHTT--CCCCCHHHHHHHHHHHHHHCCSEEEEECCTT---------------S
T ss_pred             cHHHHHHHHHHhCCCCCHHHHHHHHHHHHcC--CCCcCHHHHHHHHHHHhccCCCEEEEecCCC---------------c
Confidence            6778999999984 46889999988876543  3468999999999999999999999999999               9


Q ss_pred             HHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHH
Q 022597          147 YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY  226 (294)
Q Consensus       147 ~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~  226 (294)
                      +.+..++...+ +++|+++|+++++++.|+++++..|+.++++++.+|+.+.++...   ..++||+||++.....+..+
T Consensus        67 ~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~~fD~I~~~~~~~~~~~~  142 (233)
T 2gpy_A           67 YSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE---LYPLFDVLFIDAAKGQYRRF  142 (233)
T ss_dssp             HHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT---TSCCEEEEEEEGGGSCHHHH
T ss_pred             HHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc---cCCCccEEEECCCHHHHHHH
Confidence            99999999986 789999999999999999999999998889999999988766542   13689999999988889999


Q ss_pred             HHHHHhcccCCeEEEEecccCCCcccCccc----CCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          227 FELLLQLIRVGGIIVIDNVLWHGKVADQMV----NDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       227 ~~~~~~lLkpgG~ivid~vl~~g~v~~~~~----~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      ++.+.++|+|||+++++|++|.|.+.++..    .......+++|++.+.+++++.++++|++||+.+++|+
T Consensus       143 l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~dG~~~~~~~  214 (233)
T 2gpy_A          143 FDMYSPMVRPGGLILSDNVLFRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIKR  214 (233)
T ss_dssp             HHHHGGGEEEEEEEEEETTTC-------------------------CTTTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHHHHcCCCeEEEEEcCCcCCccCCccccccchhHHHHHHHHHHHHHHhCCCeEEEEEEcCCeEEEEEEc
Confidence            999999999999999999999998865532    11223578899999999999999999999999999985

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.95  E-value=4.8e-27  Score=206.85  Aligned_cols=194  Identities=21%  Similarity=0.355  Sum_probs=165.7

Q ss_pred             hhHHHHHHhcCC--C-hHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCc
Q 022597           70 PPLYDYILRNVR--E-PEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSG  146 (294)
Q Consensus        70 ~~l~~Y~~~~~~--~-~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG  146 (294)
                      ..+++|+.++..  + +++++.+++..... ...+.++|..++++..++...++++|||||||+               |
T Consensus         7 ~~~~~y~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~---------------G   70 (221)
T 3u81_A            7 QRILRYVQQNAKPGDPQSVLEAIDTYCTQK-EWAMNVGDAKGQIMDAVIREYSPSLVLELGAYC---------------G   70 (221)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHH-TCGGGCCHHHHHHHHHHHHHHCCSEEEEECCTT---------------S
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHhhhc-CcCcccCHHHHHHHHHHHHhcCCCEEEEECCCC---------------C
Confidence            468899998843  2 35778887776544 345789999999999999999999999999999               9


Q ss_pred             HHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHH
Q 022597          147 YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY  226 (294)
Q Consensus       147 ~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~  226 (294)
                      ++++++++.++++++|+++|+++++++.|+++++.+|+.++++++.+|+.+.++.+......++||+||+|+....|...
T Consensus        71 ~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~  150 (221)
T 3u81_A           71 YSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPD  150 (221)
T ss_dssp             HHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHH
Confidence            99999999887789999999999999999999999999989999999998876654221122689999999988777754


Q ss_pred             ---HHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEee-------cCCceEEEEEC
Q 022597          227 ---FELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVP-------IGDGMTICQKR  294 (294)
Q Consensus       227 ---~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp-------~gdGl~i~~k~  294 (294)
                         ++.+ ++|+|||+++++|+.|+|.              ++|++.+.++|+++++++|       ++||+.+++++
T Consensus       151 ~~~~~~~-~~LkpgG~lv~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          151 TLLLEKC-GLLRKGTVLLADNVIVPGT--------------PDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             HHHHHHT-TCCCTTCEEEESCCCCCCC--------------HHHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             HHHHHhc-cccCCCeEEEEeCCCCcch--------------HHHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence               4444 9999999999999998773              6889999999999999999       89999999875

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.80  E-value=5.8e-19  Score=156.41  Aligned_cols=149  Identities=16%  Similarity=0.115  Sum_probs=116.9

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK  177 (294)
Q Consensus        98 ~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~  177 (294)
                      .+.+.++++++++|..  .+.++++|||+||                 ||||+++++. + +++|++||.|+++.+.|++
T Consensus        11 ~P~~~v~~~~~~~L~~--~l~~a~~VLEiGt-----------------GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~   69 (202)
T 3cvo_A           11 RPELTMPPAEAEALRM--AYEEAEVILEYGS-----------------GGSTVVAAEL-P-GKHVTSVESDRAWARMMKA   69 (202)
T ss_dssp             CCCCCSCHHHHHHHHH--HHHHCSEEEEESC-----------------SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHH
T ss_pred             CCCccCCHHHHHHHHH--HhhCCCEEEEECc-----------------hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHH
Confidence            4567899999999988  5568999999997                 9999999984 4 7999999999999999999


Q ss_pred             HHHHhCC--CCcEEEEEcchhhh--------------HHHHh----hcCCCCceeEEEEcCCccchHHHHHHHHhcccCC
Q 022597          178 YYERAGV--SHKVKIKHGLAADS--------------LKALI----LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG  237 (294)
Q Consensus       178 ~~~~~gl--~~~v~~~~gda~~~--------------l~~l~----~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg  237 (294)
                      +++++|+  .++|+++.||+.+.              ++.+.    .....++||+||+|+.++  ..++..+.++|+||
T Consensus        70 ~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--~~~~~~~l~~l~~G  147 (202)
T 3cvo_A           70 WLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR--VGCALATAFSITRP  147 (202)
T ss_dssp             HHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH--HHHHHHHHHHCSSC
T ss_pred             HHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc--hhHHHHHHHhcCCC
Confidence            9999999  88999999997543              22221    111247899999999876  47788889999999


Q ss_pred             eEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEE
Q 022597          238 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI  279 (294)
Q Consensus       238 G~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~  279 (294)
                      |+|++||+++.+.-          ..+.+|.+.+...++...
T Consensus       148 G~Iv~DNv~~r~~y----------~~v~~~~~~~~~~~~~a~  179 (202)
T 3cvo_A          148 VTLLFDDYSQRRWQ----------HQVEEFLGAPLMIGRLAA  179 (202)
T ss_dssp             EEEEETTGGGCSSG----------GGGHHHHCCCEEETTEEE
T ss_pred             eEEEEeCCcCCcch----------HHHHHHHhHHhhcCceEE
Confidence            99999998655431          123566655555555433

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.73  E-value=8e-18  Score=156.03  Aligned_cols=158  Identities=13%  Similarity=0.193  Sum_probs=128.2

Q ss_pred             CCHHHHHHHHHHHhhh----CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC----CCcEEEEEeCChH----
Q 022597          103 VSPDQAQLLAMLVQIL----GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP----ESGCLVACERDAR----  170 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~----~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~----~~~~v~~id~~~~----  170 (294)
                      +++....+|..+++..    .+++|||+||++               |+++++++..++    ++++|+++|..+.    
T Consensus        86 v~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~---------------G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~  150 (282)
T 2wk1_A           86 IGIKRLENIRQCVEDVIGNNVPGDLVETGVWR---------------GGACILMRGILRAHDVRDRTVWVADSFQGIPDV  150 (282)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCCEEEEECCTT---------------SHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCC
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCCcEEEeecCc---------------hHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcc
Confidence            5678888888888763    488999999999               999999998874    3789999996421    


Q ss_pred             ----------------------HHHHHHHHHHHhCCC-CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-cchHHH
Q 022597          171 ----------------------SLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-RMYQEY  226 (294)
Q Consensus       171 ----------------------~~~~A~~~~~~~gl~-~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-~~~~~~  226 (294)
                                            ..+.++++++++|+. ++|+++.|++.+.++.+.    .++||+||+|+++ ..+..+
T Consensus       151 ~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~~----~~~~d~vfIDaD~y~~~~~~  226 (282)
T 2wk1_A          151 GEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAP----IDTLAVLRMDGDLYESTWDT  226 (282)
T ss_dssp             CTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTCC----CCCEEEEEECCCSHHHHHHH
T ss_pred             cccccccccccccccccccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhCC----CCCEEEEEEcCCccccHHHH
Confidence                                  367899999999994 899999999998877642    4689999999997 457899


Q ss_pred             HHHHHhcccCCeEEEEecccC-CCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 022597          227 FELLLQLIRVGGIIVIDNVLW-HGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK  293 (294)
Q Consensus       227 ~~~~~~lLkpgG~ivid~vl~-~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k  293 (294)
                      |+.+.++|+|||+|++||+.| .|          .+.++++|++.    .++...+++++.+...-||
T Consensus       227 Le~~~p~L~pGGiIv~DD~~~~~G----------~~~Av~Ef~~~----~~i~~~i~~~~~~~v~~rk  280 (282)
T 2wk1_A          227 LTNLYPKVSVGGYVIVDDYMMCPP----------CKDAVDEYRAK----FDIADELITIDRDGVYWQR  280 (282)
T ss_dssp             HHHHGGGEEEEEEEEESSCTTCHH----------HHHHHHHHHHH----TTCCSCCEECSSSCEEEEC
T ss_pred             HHHHHhhcCCCEEEEEcCCCCCHH----------HHHHHHHHHHh----cCCceEEEEecCEEEEEEe
Confidence            999999999999999999964 22          35688888754    3466678888877666665

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.72  E-value=1.3e-17  Score=153.69  Aligned_cols=181  Identities=9%  Similarity=0.026  Sum_probs=121.4

Q ss_pred             chhhHHhhcccccccccCccccccccccccccccccccccCCChhHHHHHHhcC-CChHHHHHHHHHHHcCCCCCCCCCH
Q 022597           27 FPLSERLRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSP  105 (294)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~-~~~~~L~~~~~~~~~~~~~~~~v~~  105 (294)
                      ..+..+++...-+|...|....+..++.+|||..+..+..++++.. .|.+.+. .+++.++++++......        
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Yd~~~~~~~~~~~~~~-~y~~~~~~~~~~~l~~~~~~~~~~~--------   82 (318)
T 2fk8_A           12 SGLVPRGSHMAEKPISPTKTRTRFEDIQAHYDVSDDFFALFQDPTR-TYSCAYFEPPELTLEEAQYAKVDLN--------   82 (318)
T ss_dssp             --------------------------CGGGGCCCHHHHTTTSCTTC-CCSCCCCSSTTCCHHHHHHHHHHHH--------
T ss_pred             hhHHHHHHHHhhhhcccCChhhhHHHHHHhcCCCHHHHHHHcCCCC-CcceeeeCCCCCCHHHHHHHHHHHH--------
Confidence            3333444333344557788888999999999999888888888875 6766653 34455555554432211        


Q ss_pred             HHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          106 DQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       106 ~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                            ...+...++.+|||||||+               |..+..++...  +.+|+++|+++++++.|+++++..|+.
T Consensus        83 ------~~~~~~~~~~~vLDiGcG~---------------G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~  139 (318)
T 2fk8_A           83 ------LDKLDLKPGMTLLDIGCGW---------------GTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTN  139 (318)
T ss_dssp             ------HTTSCCCTTCEEEEESCTT---------------SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCS
T ss_pred             ------HHhcCCCCcCEEEEEcccc---------------hHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCC
Confidence                  1111223456999999999               99999999876  469999999999999999999999998


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      ++++++.+|+.+.         .++||+|+...     +..+...+++.+.++|+|||.+++......
T Consensus       140 ~~v~~~~~d~~~~---------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          140 RSRQVLLQGWEDF---------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             SCEEEEESCGGGC---------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             CceEEEECChHHC---------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence            8999999998654         37899998763     336788999999999999999999877543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.71  E-value=5e-18  Score=155.56  Aligned_cols=162  Identities=9%  Similarity=0.090  Sum_probs=129.5

Q ss_pred             cccccccccccccccccccccCCChhHHHHHHhcC-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEE
Q 022597           46 FTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI  124 (294)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~-~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vL  124 (294)
                      ..+...|+++|||..+..|..++++.+ .|.+.+. .+++.+++++......              +...+...++.+||
T Consensus        13 ~~~~~~~i~~~Yd~~~~~y~~~l~~~~-~y~~~~~~~~~~~l~~a~~~~~~~--------------~~~~~~~~~~~~vL   77 (302)
T 3hem_A           13 LKPPVEAVRSHYDKSNEFFKLWLDPSM-TYSCAYFERPDMTLEEAQYAKRKL--------------ALDKLNLEPGMTLL   77 (302)
T ss_dssp             CCCCHHHHHHHHTSCHHHHHHHSCTTC-CCSCCCCSSTTCCHHHHHHHHHHH--------------HHHTTCCCTTCEEE
T ss_pred             ccchHHHHHHhcCCCHHHHHHhcCCCC-ceeeEEecCCCCCHHHHHHHHHHH--------------HHHHcCCCCcCEEE
Confidence            445688999999999999999999887 7887763 3455666665543221              11112234566999


Q ss_pred             EEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhh
Q 022597          125 EVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL  204 (294)
Q Consensus       125 EiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~  204 (294)
                      |||||+               |..+..++...+  .+|+++|+++++++.|+++++..|+.++++++.+|+.+.      
T Consensus        78 DiGcG~---------------G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------  134 (302)
T 3hem_A           78 DIGCGW---------------GSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------  134 (302)
T ss_dssp             EETCTT---------------SHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------
T ss_pred             EeeccC---------------cHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc------
Confidence            999999               999999999864  799999999999999999999999998999999999764      


Q ss_pred             cCCCCceeEEEEcC------------CccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          205 NGEASSYDFAFVDA------------EKRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       205 ~~~~~~fD~vfiD~------------~~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                         .++||+|+...            +...+..+++.+.++|+|||.+++..+...
T Consensus       135 ---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          135 ---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             ---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             ---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence               47899998753            224568999999999999999999887544

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.69  E-value=5.4e-17  Score=147.01  Aligned_cols=163  Identities=10%  Similarity=0.093  Sum_probs=127.0

Q ss_pred             ccccccccccccccccccccccCCChhHHHHHHhcC-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeE
Q 022597           45 QFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRC  123 (294)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~-~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~v  123 (294)
                      ....+..|+++|||..+..+..++++.+ .|.+.+. .+.+.++++++.....              +...+...++.+|
T Consensus         4 ~~~~~~~~i~~~Yd~~~~~~~~~~~~~~-~y~~~~~~~~~~~l~~a~~~~~~~--------------~~~~~~~~~~~~v   68 (287)
T 1kpg_A            4 ELKPHFANVQAHYDLSDDFFRLFLDPTQ-TYSCAYFERDDMTLQEAQIAKIDL--------------ALGKLGLQPGMTL   68 (287)
T ss_dssp             CSCCCHHHHHHHHTSCHHHHTTTSCTTC-CCSCCCCSSTTCCHHHHHHHHHHH--------------HHTTTTCCTTCEE
T ss_pred             cccccHHHHHHhcCCCHHHHHHhcCCCC-CcceEEecCCCCCHHHHHHHHHHH--------------HHHHcCCCCcCEE
Confidence            3446788999999999998999898875 7777663 3455566665543221              1111123355699


Q ss_pred             EEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHh
Q 022597          124 IEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI  203 (294)
Q Consensus       124 LEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~  203 (294)
                      ||||||+               |..+..++...+  .+|+++|+++++++.|+++++..|+.++++++.+|+.+.     
T Consensus        69 LDiGcG~---------------G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----  126 (287)
T 1kpg_A           69 LDVGCGW---------------GATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-----  126 (287)
T ss_dssp             EEETCTT---------------SHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-----
T ss_pred             EEECCcc---------------cHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC-----
Confidence            9999999               999999996653  699999999999999999999999988999999998653     


Q ss_pred             hcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          204 LNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       204 ~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                          .++||+|+....     ..++..+++.+.++|+|||.+++......
T Consensus       127 ----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          127 ----DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             ----CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             ----CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence                378999987532     35678999999999999999999887543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.64  E-value=5.5e-16  Score=145.28  Aligned_cols=149  Identities=23%  Similarity=0.360  Sum_probs=114.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--CC-CCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--gl-~~~v~~~~gd  194 (294)
                      .++++|||||||+               |..+..+++.. +..+|+++|+|+++++.|++++...  |+ .++++++.+|
T Consensus       107 ~~~~~VLdIG~G~---------------G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D  170 (314)
T 2b2c_A          107 PDPKRVLIIGGGD---------------GGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD  170 (314)
T ss_dssp             SSCCEEEEESCTT---------------SHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSC
T ss_pred             CCCCEEEEEcCCc---------------CHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEECh
Confidence            3567999999999               99999998854 3689999999999999999998764  44 5689999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCc------cch-HHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHH
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEK------RMY-QEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNF  267 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~------~~~-~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f  267 (294)
                      +.+.++..     .++||+||+|...      ..| .++++.+.+.|+|||++++++-    ..   .........+.++
T Consensus       171 ~~~~l~~~-----~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~----~~---~~~~~~~~~~~~~  238 (314)
T 2b2c_A          171 GFEFLKNH-----KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE----SV---WLHLPLIAHLVAF  238 (314)
T ss_dssp             HHHHHHHC-----TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECC----CT---TTCHHHHHHHHHH
T ss_pred             HHHHHHhc-----CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC----Cc---ccCHHHHHHHHHH
Confidence            98876642     5789999998742      223 7899999999999999999862    11   1122334567788


Q ss_pred             HHHhhhCCCeEEEEeec---CC-ceEEEEEC
Q 022597          268 NKNLMEDERVSISMVPI---GD-GMTICQKR  294 (294)
Q Consensus       268 ~~~l~~~~~~~~~~lp~---gd-Gl~i~~k~  294 (294)
                      ++.+..+.++..+.+|+   |+ |++++.|+
T Consensus       239 l~~vF~~v~~~~~~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          239 NRKIFPAVTYAQSIVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             HHHHCSEEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             HHHHCCcceEEEEEecCcCCCceEEEEEeCC
Confidence            88887777888888998   45 88888763

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.63  E-value=1.1e-15  Score=142.37  Aligned_cols=147  Identities=18%  Similarity=0.336  Sum_probs=116.7

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH--hCC-CCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~--~gl-~~~v~~~~gd  194 (294)
                      .++++|||||||+               |..+..+++.. +..+|++||+|+++++.|++++..  .++ .++++++.+|
T Consensus        94 ~~~~~VLdiG~G~---------------G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~D  157 (304)
T 2o07_A           94 PNPRKVLIIGGGD---------------GGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGD  157 (304)
T ss_dssp             SSCCEEEEEECTT---------------SHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred             CCCCEEEEECCCc---------------hHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECc
Confidence            3567999999999               99999998764 368999999999999999999876  455 5689999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEecc-cCCCcccCcccCCcchHHHHH
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDNV-LWHGKVADQMVNDAKTISIRN  266 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid~v-l~~g~v~~~~~~~~~~~~ir~  266 (294)
                      +.+.++..     .++||+||+|....       .+.++++.+.++|+|||++++++. .|..        ......+++
T Consensus       158 a~~~l~~~-----~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~--------~~~~~~~~~  224 (304)
T 2o07_A          158 GFEFMKQN-----QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLH--------LDLIKEMRQ  224 (304)
T ss_dssp             HHHHHHTC-----SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTC--------HHHHHHHHH
T ss_pred             HHHHHhhC-----CCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccc--------hHHHHHHHH
Confidence            98876542     57899999997632       246789999999999999999873 3432        123456788


Q ss_pred             HHHHhhhCCCeEEEEeecC----CceEEEEE
Q 022597          267 FNKNLMEDERVSISMVPIG----DGMTICQK  293 (294)
Q Consensus       267 f~~~l~~~~~~~~~~lp~g----dGl~i~~k  293 (294)
                      +++.+..+.++..+.+|..    .|+++|.|
T Consensus       225 ~l~~~f~~v~~~~~~vP~~~~g~~g~~~as~  255 (304)
T 2o07_A          225 FCQSLFPVVAYAYCTIPTYPSGQIGFMLCSK  255 (304)
T ss_dssp             HHHHHCSEEEEEEEECTTSGGGEEEEEEEES
T ss_pred             HHHHhCCCceeEEEEeccccCcceEEEEEeC
Confidence            8888888888888889983    47888875

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.59  E-value=3.2e-14  Score=121.43  Aligned_cols=106  Identities=19%  Similarity=0.222  Sum_probs=90.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..++.++..  ...+|+++|+|+++++.|+++++.+++ ++++++++|+.+
T Consensus        43 ~~~~~vLDlgcG~---------------G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~  104 (189)
T 3p9n_A           43 LTGLAVLDLYAGS---------------GALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAA  104 (189)
T ss_dssp             CTTCEEEEETCTT---------------CHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHH
T ss_pred             CCCCEEEEeCCCc---------------CHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHH
Confidence            4677999999999               9999987763  256899999999999999999999998 689999999988


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCc----cchHHHHHHHHh--cccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAEK----RMYQEYFELLLQ--LIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~----~~~~~~~~~~~~--lLkpgG~ivid~v  245 (294)
                      ..+.+.    .++||+|+++++.    ..+.+.++.+.+  +|+|||++++...
T Consensus       105 ~~~~~~----~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~  154 (189)
T 3p9n_A          105 VVAAGT----TSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERA  154 (189)
T ss_dssp             HHHHCC----SSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred             HHhhcc----CCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEec
Confidence            765431    4789999999763    347788888888  9999999999765

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.59  E-value=1e-14  Score=126.84  Aligned_cols=164  Identities=15%  Similarity=0.187  Sum_probs=122.1

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.+...+.+...+...++.+|||+|||+               |..+..++...+ ..+++++|+++++++.|+++++.
T Consensus        12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~---------------G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~   75 (217)
T 3jwh_A           12 SLNQQRMNGVVAALKQSNARRVIDLGCGQ---------------GNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDR   75 (217)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEEETCTT---------------CHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEeCCCC---------------CHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence            45666667777777777889999999999               999999988654 57999999999999999999998


Q ss_pred             hCCCC----cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc-----C
Q 022597          182 AGVSH----KVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL-----W  247 (294)
Q Consensus       182 ~gl~~----~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl-----~  247 (294)
                      .++.+    +++++.+|+.....      ..++||+|+....     .+....+++.+.+.|+|||++++....     |
T Consensus        76 ~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~  149 (217)
T 3jwh_A           76 LRLPRNQWERLQLIQGALTYQDK------RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKF  149 (217)
T ss_dssp             CCCCHHHHTTEEEEECCTTSCCG------GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHT
T ss_pred             hcCCcccCcceEEEeCCcccccc------cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhh
Confidence            88775    89999999743211      1368999997643     335678999999999999988875432     1


Q ss_pred             CCc----ccCccc-CCcchHHHHHHHHHhhhCCCeEEEEeecCCc
Q 022597          248 HGK----VADQMV-NDAKTISIRNFNKNLMEDERVSISMVPIGDG  287 (294)
Q Consensus       248 ~g~----v~~~~~-~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdG  287 (294)
                      .+.    ...+.. .......++++.+.+.+..+++++..++|+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          150 ANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQPIGEA  194 (217)
T ss_dssp             C-----------CCSCBCHHHHHHHHHHHHHHSSEEEEECCCSCC
T ss_pred             cccccccccccccccccCHHHHHHHHHHHHHHcCceEEEEecCCc
Confidence            111    000110 1123456777788888888999999998875

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.59  E-value=2.2e-15  Score=134.91  Aligned_cols=116  Identities=16%  Similarity=0.296  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHH---CCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~---~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      |+.+.++..++...++.+|||||||+               |+++..++..   +.++++|+++|+++++++.|+     
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~Gt---------------G~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----  126 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYN---------------GGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----  126 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTT---------------SHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCC---------------CHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----
Confidence            88888888888888899999999999               9999999997   445799999999999998887     


Q ss_pred             hCCCCcEEEEEcchhhh--HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHh-cccCCeEEEEecc
Q 022597          182 AGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ-LIRVGGIIVIDNV  245 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~--l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~-lLkpgG~ivid~v  245 (294)
                       ++.++++++++|+.+.  ++.+    ...+||+|++|..+..+..+++.+.+ .|+|||+++++++
T Consensus       127 -~~~~~v~~~~gD~~~~~~l~~~----~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          127 -SDMENITLHQGDCSDLTTFEHL----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             -GGCTTEEEEECCSSCSGGGGGG----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             -ccCCceEEEECcchhHHHHHhh----ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence             2346899999999764  3322    12479999999887788999999996 9999999999987

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.59  E-value=1.4e-14  Score=125.80  Aligned_cols=164  Identities=14%  Similarity=0.110  Sum_probs=120.8

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.+...+.+..++...++.+|||+|||+               |..+..++...+ ..+++++|+++++++.|+++++.
T Consensus        12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~---------------G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~   75 (219)
T 3jwg_A           12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGE---------------GNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKI   75 (219)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCEEEEETCTT---------------CHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTG
T ss_pred             cchHHHHHHHHHHHhhcCCCEEEEecCCC---------------CHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHh
Confidence            35566666677777777889999999999               999999988654 57999999999999999999998


Q ss_pred             hCCCC----cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCCCccc
Q 022597          182 AGVSH----KVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA  252 (294)
Q Consensus       182 ~gl~~----~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~  252 (294)
                      .++.+    +++++.+|+.....      ..++||+|+....     .+....+++.+.+.|+|||+++.......+...
T Consensus        76 ~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~  149 (219)
T 3jwg_A           76 DRLPEMQRKRISLFQSSLVYRDK------RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHY  149 (219)
T ss_dssp             GGSCHHHHTTEEEEECCSSSCCG------GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCC
T ss_pred             hccccccCcceEEEeCccccccc------ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhh
Confidence            88765    89999999843211      1478999987543     234568999999999999988764332221111


Q ss_pred             C---------ccc-CCcchHHHHHHHHHhhhCCCeEEEEeecCCc
Q 022597          253 D---------QMV-NDAKTISIRNFNKNLMEDERVSISMVPIGDG  287 (294)
Q Consensus       253 ~---------~~~-~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdG  287 (294)
                      .         +.. .......++++.+.+.+..++++...++|++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~~g~~  194 (219)
T 3jwg_A          150 GNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIGEI  194 (219)
T ss_dssp             CCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEEESCC
T ss_pred             cccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEecCCc
Confidence            0         000 0113346777777777777899999988876

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.58  E-value=1.5e-14  Score=124.69  Aligned_cols=120  Identities=16%  Similarity=0.284  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..++....+...+...++.+|||+|||+               |..++.++...+ .++|+++|+++++++.|+++++..
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~---------------G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~   87 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGS---------------ASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKF   87 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTT---------------CHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCC---------------CHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHh
Confidence            4455545555555666778999999999               999999999865 789999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      |+ ++++++.+|+.+.++.      .++||+||++.....+..+++.+.+.|+|||.+++...
T Consensus        88 ~~-~~v~~~~~d~~~~~~~------~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A           88 VA-RNVTLVEAFAPEGLDD------LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             TC-TTEEEEECCTTTTCTT------SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CC-CcEEEEeCChhhhhhc------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence            98 6799999999765432      36799999998766889999999999999999999765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.58  E-value=4.5e-15  Score=132.93  Aligned_cols=160  Identities=13%  Similarity=0.138  Sum_probs=103.4

Q ss_pred             ccccccccccccccccccCCChhHHHHHHhcCCC-h--HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEE
Q 022597           49 NCCVSSAHDEKYSNKQVISVTPPLYDYILRNVRE-P--EILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIE  125 (294)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~~~-~--~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLE  125 (294)
                      +..++.+|||..+..|..++++.+ +|  .+... +  ..+.++++...              +.+...+...++.+|||
T Consensus         5 ~~~~~~~~Yd~~~~~y~~~~~~~~-~~--~y~~~~~~~~~~~~~~~~~~--------------~~l~~~~~~~~~~~vLD   67 (273)
T 3bus_A            5 TPEEVRQMYDDFTDPFARIWGENL-HF--GYWEDAGADVSVDDATDRLT--------------DEMIALLDVRSGDRVLD   67 (273)
T ss_dssp             ------------------CCGGGC-CC--CCCCCSSCCCCHHHHHHHHH--------------HHHHHHSCCCTTCEEEE
T ss_pred             cHHHHHHHHcchHHHHHHHcCCCc-eE--EecCCCccccCHHHHHHHHH--------------HHHHHhcCCCCCCEEEE
Confidence            456789999999988888887764 22  33221 1  23333322211              11122223345679999


Q ss_pred             EccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhc
Q 022597          126 VGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN  205 (294)
Q Consensus       126 iG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~  205 (294)
                      ||||+               |..+..++...  +++|+++|+++++++.|+++++..|+.++++++.+|+.+..      
T Consensus        68 iGcG~---------------G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------  124 (273)
T 3bus_A           68 VGCGI---------------GKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP------  124 (273)
T ss_dssp             ESCTT---------------SHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC------
T ss_pred             eCCCC---------------CHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC------
Confidence            99999               99999999875  58999999999999999999999999889999999987631      


Q ss_pred             CCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          206 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       206 ~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      .+.++||+|+....   ..+...+++.+.+.|+|||.+++.+..+.
T Consensus       125 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~  170 (273)
T 3bus_A          125 FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLL  170 (273)
T ss_dssp             SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred             CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeecc
Confidence            12478999987543   34568999999999999999999887544

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.58  E-value=2e-14  Score=131.90  Aligned_cols=145  Identities=16%  Similarity=0.173  Sum_probs=109.5

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--CC--------CCc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV--------SHK  187 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--gl--------~~~  187 (294)
                      .++++|||||||+               |..+..+++. + ..+|+++|+|+++++.|++++ ..  ++        .++
T Consensus        74 ~~~~~VLdiG~G~---------------G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~  135 (281)
T 1mjf_A           74 PKPKRVLVIGGGD---------------GGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEK  135 (281)
T ss_dssp             SCCCEEEEEECTT---------------SHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSS
T ss_pred             CCCCeEEEEcCCc---------------CHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCc
Confidence            3567999999999               9999999886 4 689999999999999999998 44  43        468


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----cc--hHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcc
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----RM--YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK  260 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----~~--~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~  260 (294)
                      ++++.+|+.+.++.      .++||+|++|...     ..  ..++++.+.+.|+|||++++...    .   +......
T Consensus       136 v~~~~~D~~~~l~~------~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~----~---~~~~~~~  202 (281)
T 1mjf_A          136 AKLTIGDGFEFIKN------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG----S---VYLFTDE  202 (281)
T ss_dssp             EEEEESCHHHHHHH------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE----E---TTTSHHH
T ss_pred             EEEEECchHHHhcc------cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC----C---cccCHHH
Confidence            99999999877654      3689999999752     11  47899999999999999998732    1   1111223


Q ss_pred             hHHHHHHHHHhhhCCCeEEEEeecCCc---eEEEEE
Q 022597          261 TISIRNFNKNLMEDERVSISMVPIGDG---MTICQK  293 (294)
Q Consensus       261 ~~~ir~f~~~l~~~~~~~~~~lp~gdG---l~i~~k  293 (294)
                      ...+.++++.+..+..+..+.+|.++|   +.++.|
T Consensus       203 ~~~~~~~l~~~f~~v~~~~~~vP~~~g~~~~~~as~  238 (281)
T 1mjf_A          203 LISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGVK  238 (281)
T ss_dssp             HHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEEE
T ss_pred             HHHHHHHHHHHCCceEEEEEecCCCCceEEEEEeeC
Confidence            345556666655555666778898876   677766

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.57  E-value=1.6e-14  Score=134.86  Aligned_cols=149  Identities=15%  Similarity=0.139  Sum_probs=111.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH--hC-C-CCcEEEEEc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AG-V-SHKVKIKHG  193 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~--~g-l-~~~v~~~~g  193 (294)
                      .++++|||||||+               |..+..+++.. +..+|+++|+|+++++.|++++..  .| + .++++++.+
T Consensus        76 ~~~~~VLdiG~G~---------------G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~  139 (314)
T 1uir_A           76 PEPKRVLIVGGGE---------------GATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID  139 (314)
T ss_dssp             SCCCEEEEEECTT---------------SHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred             CCCCeEEEEcCCc---------------CHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEc
Confidence            4667999999999               99999998854 367999999999999999999875  23 3 468999999


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccc----------hHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHH
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRM----------YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTIS  263 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~----------~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~  263 (294)
                      |+.+.++..     .++||+|++|.....          ..++++.+.+.|+|||++++...    ....  ........
T Consensus       140 D~~~~l~~~-----~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~----~~~~--~~~~~~~~  208 (314)
T 1uir_A          140 DARAYLERT-----EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG----MILL--THHRVHPV  208 (314)
T ss_dssp             CHHHHHHHC-----CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE----EECC-----CHHHH
T ss_pred             hHHHHHHhc-----CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc----Cccc--cCHHHHHH
Confidence            998876553     578999999975432          57999999999999999998532    1110  11123345


Q ss_pred             HHHHHHHhhhCCCeEEEEeecCCc---eEEEEE
Q 022597          264 IRNFNKNLMEDERVSISMVPIGDG---MTICQK  293 (294)
Q Consensus       264 ir~f~~~l~~~~~~~~~~lp~gdG---l~i~~k  293 (294)
                      +.+.++.+..+..+..+.+|.++|   +.+|.|
T Consensus       209 ~~~~l~~~F~~v~~~~~~vP~~~g~~~~~~as~  241 (314)
T 1uir_A          209 VHRTVREAFRYVRSYKNHIPGFFLNFGFLLASD  241 (314)
T ss_dssp             HHHHHHTTCSEEEEEEEEEGGGTEEEEEEEEES
T ss_pred             HHHHHHHHCCceEEEEEecCCCCCeEEEEEEEC
Confidence            555665555555667788999877   466654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.57  E-value=3.6e-14  Score=123.91  Aligned_cols=118  Identities=18%  Similarity=0.213  Sum_probs=98.7

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      ...+.....+...+...++.+|||+|||+               |..++.+++.   +++|+++|+++++++.|+++++.
T Consensus        38 ~~~~~~~~~~l~~l~~~~~~~vLDlGcG~---------------G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~   99 (204)
T 3njr_A           38 ITKSPMRALTLAALAPRRGELLWDIGGGS---------------GSVSVEWCLA---GGRAITIEPRADRIENIQKNIDT   99 (204)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEETCTT---------------CHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhcCCCCCCEEEEecCCC---------------CHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHH
Confidence            44555555555566666778999999999               9999999986   68999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .|+.++++++.+|+.+.++.      .++||+||++... ... +++.+.+.|+|||.+++..+
T Consensus       100 ~g~~~~v~~~~~d~~~~~~~------~~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          100 YGLSPRMRAVQGTAPAALAD------LPLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             TTCTTTEEEEESCTTGGGTT------SCCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             cCCCCCEEEEeCchhhhccc------CCCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEec
Confidence            99987899999999875432      3579999998744 344 99999999999999999766

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.56  E-value=1.8e-14  Score=121.24  Aligned_cols=107  Identities=13%  Similarity=0.196  Sum_probs=91.3

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++.+|||+|||+               |..++.++.. + ..+|+++|+++++++.|+++++..|+.++++++.+|+.
T Consensus        29 ~~~~~~vLDlGcG~---------------G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   91 (177)
T 2esr_A           29 YFNGGRVLDLFAGS---------------GGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE   91 (177)
T ss_dssp             CCCSCEEEEETCTT---------------CHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHH
T ss_pred             hcCCCeEEEeCCCC---------------CHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHH
Confidence            44678999999999               9999998876 2 57999999999999999999999998888999999998


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHH--hcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLL--QLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~--~lLkpgG~ivid~v  245 (294)
                      +.++..     .++||+|+.+++  ...+.+.++.+.  +.|+|||++++...
T Consensus        92 ~~~~~~-----~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  139 (177)
T 2esr_A           92 RAIDCL-----TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETD  139 (177)
T ss_dssp             HHHHHB-----CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             HhHHhh-----cCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence            866543     467999999976  345677777887  89999999998755

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.56  E-value=2.6e-14  Score=133.32  Aligned_cols=107  Identities=15%  Similarity=0.140  Sum_probs=92.7

Q ss_pred             HHHhhhCCCeEEEEccccccccccccccccCCCcH-HHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEE
Q 022597          113 MLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK  191 (294)
Q Consensus       113 ~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~-~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~  191 (294)
                      .++++.++.+|||||||+               |. +++.+++ .+ +++|+++|+++++++.|++++++.|+ ++++++
T Consensus       116 ~la~l~~g~rVLDIGcG~---------------G~~ta~~lA~-~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v  177 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGP---------------LPLTGILLSH-VY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVI  177 (298)
T ss_dssp             HHTTCCTTCEEEEECCCS---------------SCHHHHHHHH-TT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEE
T ss_pred             HHcCCCCcCEEEEECCCc---------------cHHHHHHHHH-cc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEE
Confidence            356778889999999999               64 4455555 33 78999999999999999999999999 799999


Q ss_pred             EcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          192 HGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       192 ~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ++|+.+. +       .++||+||+++..+++.++++.+.+.|||||.+++.+.
T Consensus       178 ~gDa~~l-~-------d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          178 TGDETVI-D-------GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             ESCGGGG-G-------GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             ECchhhC-C-------CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            9999874 1       47899999988888899999999999999999999874

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.55  E-value=7.3e-15  Score=131.05  Aligned_cols=111  Identities=17%  Similarity=0.179  Sum_probs=90.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||||||+               |.++.++++..+  .++|+||+++++++.|+++.+..+.  +++++.+|+.+.
T Consensus        60 ~G~rVLdiG~G~---------------G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~~--~~~~~~~~a~~~  120 (236)
T 3orh_A           60 KGGRVLEVGFGM---------------AIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQTH--KVIPLKGLWEDV  120 (236)
T ss_dssp             TCEEEEEECCTT---------------SHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCSS--EEEEEESCHHHH
T ss_pred             CCCeEEEECCCc---------------cHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCCC--ceEEEeehHHhh
Confidence            456999999999               999999887643  6899999999999999999887664  689999999876


Q ss_pred             HHHHhhcCCCCceeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEEecccCCCccc
Q 022597          199 LKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA  252 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~--------~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~  252 (294)
                      +..+    +.++||.|+.|...        .+...+++.+.++|||||++++.|....|...
T Consensus       121 ~~~~----~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~  178 (236)
T 3orh_A          121 APTL----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELM  178 (236)
T ss_dssp             GGGS----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHT
T ss_pred             cccc----cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhh
Confidence            5544    25789999998642        24578899999999999999998876555433

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.54  E-value=3e-14  Score=119.07  Aligned_cols=115  Identities=17%  Similarity=0.156  Sum_probs=94.1

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      ...+.......++.+|||+|||+               |..+..++...+ +++|+++|+++++++.|+++++..|+.++
T Consensus        14 ~~~~~~~~~~~~~~~vldiG~G~---------------G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~   77 (178)
T 3hm2_A           14 RALAISALAPKPHETLWDIGGGS---------------GSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDR   77 (178)
T ss_dssp             HHHHHHHHCCCTTEEEEEESTTT---------------THHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTS
T ss_pred             HHHHHHHhcccCCCeEEEeCCCC---------------CHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCC
Confidence            33444444555667999999999               999999998875 78999999999999999999999999878


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      + ++.+|+.+.++..     .++||+|++...... ..+++.+.+.|+|||.+++...
T Consensus        78 ~-~~~~d~~~~~~~~-----~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           78 I-AVQQGAPRAFDDV-----PDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             E-EEECCTTGGGGGC-----CSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEEC
T ss_pred             E-EEecchHhhhhcc-----CCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEee
Confidence            9 8889986654321     378999998876444 7889999999999999998765

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.54  E-value=8.9e-14  Score=117.07  Aligned_cols=109  Identities=15%  Similarity=0.174  Sum_probs=90.4

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..++.++..  ...+|+++|+++++++.|+++++..++.++++++++|+.+
T Consensus        43 ~~~~~vLD~GcG~---------------G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  105 (187)
T 2fhp_A           43 FDGGMALDLYSGS---------------GGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR  105 (187)
T ss_dssp             CSSCEEEETTCTT---------------CHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCCCCEEEeCCcc---------------CHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHH
Confidence            3567999999999               9999988773  2579999999999999999999999988889999999988


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHH--HhcccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELL--LQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~--~~lLkpgG~ivid~v  245 (294)
                      .++.+...  .++||+|+.+++  .......++.+  .++|+|||++++...
T Consensus       106 ~~~~~~~~--~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~  155 (187)
T 2fhp_A          106 ALEQFYEE--KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETD  155 (187)
T ss_dssp             HHHHHHHT--TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             HHHHHHhc--CCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeC
Confidence            76544221  468999999976  34567777777  788999999998654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.53  E-value=9.3e-14  Score=126.47  Aligned_cols=115  Identities=13%  Similarity=0.258  Sum_probs=94.0

Q ss_pred             HHHHHHHh--hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          109 QLLAMLVQ--ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       109 ~lL~~l~~--~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      +++..++.  ..++.+|||+|||+               |..++.+++..+ ++++|+|+|+++++++.|+++++..+..
T Consensus        58 ~~i~~l~~~~~~~~~~vLDlGcGt---------------G~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~  122 (261)
T 4gek_A           58 SMIGMLAERFVQPGTQVYDLGCSL---------------GAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP  122 (261)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTT---------------THHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCS
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCC---------------CHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccC
Confidence            34444443  33567999999999               999999999874 4679999999999999999999999998


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+++++++|+.+.        +.++||+|++...     ......+++.+.+.|+|||.+++.+..
T Consensus       123 ~~v~~~~~D~~~~--------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          123 TPVDVIEGDIRDI--------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             SCEEEEESCTTTC--------CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ceEEEeecccccc--------cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEecc
Confidence            8999999998764        1467999987543     344567899999999999999986653

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.52  E-value=7.2e-14  Score=121.37  Aligned_cols=108  Identities=15%  Similarity=0.187  Sum_probs=88.4

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC-CcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~~~gda~  196 (294)
                      .++.+|||+|||+               |..++.++...  ..+|+++|+|+++++.|+++++..|+. ++++++.+|+.
T Consensus        52 ~~~~~vLDlGcGt---------------G~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~  114 (201)
T 2ift_A           52 IHQSECLDGFAGS---------------GSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSL  114 (201)
T ss_dssp             HTTCEEEETTCTT---------------CHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHH
T ss_pred             cCCCeEEEcCCcc---------------CHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHH
Confidence            3677999999999               99999866642  368999999999999999999999985 67999999997


Q ss_pred             hhHHHHhhcCCCCc-eeEEEEcCC--ccchHHHHHHH--HhcccCCeEEEEeccc
Q 022597          197 DSLKALILNGEASS-YDFAFVDAE--KRMYQEYFELL--LQLIRVGGIIVIDNVL  246 (294)
Q Consensus       197 ~~l~~l~~~~~~~~-fD~vfiD~~--~~~~~~~~~~~--~~lLkpgG~ivid~vl  246 (294)
                      +.++.+    ..++ ||+|++|++  ...+.+.++.+  .++|+|||++++...-
T Consensus       115 ~~~~~~----~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          115 DFLKQP----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             HHTTSC----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             HHHHhh----ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence            754321    1367 999999987  45577888888  5689999999987653

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.52  E-value=2.1e-13  Score=115.42  Aligned_cols=132  Identities=13%  Similarity=0.155  Sum_probs=94.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..++.++..   +++|+++|+++++++.|+++++..|+ +++++++++..+.
T Consensus        22 ~~~~vLDiGcG~---------------G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l   82 (185)
T 3mti_A           22 DESIVVDATMGN---------------GNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENL   82 (185)
T ss_dssp             TTCEEEESCCTT---------------SHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGG
T ss_pred             CCCEEEEEcCCC---------------CHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHH
Confidence            567999999999               9999999876   68999999999999999999999998 6799999777553


Q ss_pred             HHHHhhcCCCCceeEEEEcCC------------ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHH
Q 022597          199 LKALILNGEASSYDFAFVDAE------------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRN  266 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~------------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~  266 (294)
                      ....     .++||+|+.+.+            .......++.+.+.|+|||.+++.  .|.|...    .......+.+
T Consensus        83 ~~~~-----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~--~~~~~~~----~~~~~~~~~~  151 (185)
T 3mti_A           83 DHYV-----REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM--IYYGHDG----GDMEKDAVLE  151 (185)
T ss_dssp             GGTC-----CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE--EC----------CHHHHHHHH
T ss_pred             Hhhc-----cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE--EeCCCCC----CHHHHHHHHH
Confidence            2111     578999998731            234557789999999999999885  3444311    1122345566


Q ss_pred             HHHHhhhCCCeEEEE
Q 022597          267 FNKNLMEDERVSISM  281 (294)
Q Consensus       267 f~~~l~~~~~~~~~~  281 (294)
                      +.+.+.. ..+....
T Consensus       152 ~~~~l~~-~~~~~~~  165 (185)
T 3mti_A          152 YVIGLDQ-RVFTAML  165 (185)
T ss_dssp             HHHHSCT-TTEEEEE
T ss_pred             HHHhCCC-ceEEEEE
Confidence            6655533 2355433

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.52  E-value=8.4e-14  Score=123.82  Aligned_cols=118  Identities=22%  Similarity=0.274  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +.|.....+...+...++.+|||+|||+               |..+..++..+.++++++++|+++++++.|+++++..
T Consensus        77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~---------------G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~  141 (255)
T 3mb5_A           77 VHPKDAALIVAYAGISPGDFIVEAGVGS---------------GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA  141 (255)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH
T ss_pred             ccHhHHHHHHHhhCCCCCCEEEEecCCc---------------hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc
Confidence            5566666777777777888999999999               9999999998655899999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      |+.++++++.+|+.+.++       .++||+|++|.+  ....+++.+.+.|+|||.+++..
T Consensus       142 ~~~~~v~~~~~d~~~~~~-------~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          142 GFDDRVTIKLKDIYEGIE-------EENVDHVILDLP--QPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             TCTTTEEEECSCGGGCCC-------CCSEEEEEECSS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCceEEEECchhhccC-------CCCcCEEEECCC--CHHHHHHHHHHHcCCCCEEEEEE
Confidence            998889999999986421       568999999875  33578899999999999999864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.51  E-value=8.1e-14  Score=123.47  Aligned_cols=111  Identities=14%  Similarity=0.258  Sum_probs=93.8

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++.+|||+|||+               |..+..++...+  ++|+++|+++++++.|+++++..|+.++++++.+|+
T Consensus        43 ~~~~~~~vLDiG~G~---------------G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~  105 (257)
T 3f4k_A           43 ELTDDAKIADIGCGT---------------GGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM  105 (257)
T ss_dssp             CCCTTCEEEEETCTT---------------SHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             cCCCCCeEEEeCCCC---------------CHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence            444567999999999               999999999875  499999999999999999999999998999999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      .+..  +    ..++||+|+....  .-+...+++.+.++|+|||.+++.+..|..
T Consensus       106 ~~~~--~----~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  155 (257)
T 3f4k_A          106 DNLP--F----QNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASWFT  155 (257)
T ss_dssp             TSCS--S----CTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEESS
T ss_pred             hhCC--C----CCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence            6542  1    2579999987643  225788999999999999999998876544

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.51  E-value=3e-13  Score=113.35  Aligned_cols=119  Identities=20%  Similarity=0.308  Sum_probs=100.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..+.....+...+...++.+|||+|||+               |..+..++...   .+++++|+++++++.++++++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~---------------G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~   78 (192)
T 1l3i_A           17 TAMEVRCLIMCLAEPGKNDVAVDVGCGT---------------GGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRH   78 (192)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTT---------------SHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEECCCC---------------CHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHc
Confidence            4455555666666667778999999999               99999988764   79999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      |+.+++++..+|+.+.++.      .++||+|+.+........+++.+.+.|+|||.+++...
T Consensus        79 ~~~~~~~~~~~d~~~~~~~------~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           79 GLGDNVTLMEGDAPEALCK------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             TCCTTEEEEESCHHHHHTT------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCcceEEEecCHHHhccc------CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            9877899999998764321      25899999988767789999999999999999998654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.50  E-value=2e-13  Score=120.79  Aligned_cols=123  Identities=21%  Similarity=0.223  Sum_probs=99.9

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..+.....+...+...++.+|||||||+               |..+..++...  +.+|+++|+++++++.|+++++..
T Consensus        20 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~---------------G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~   82 (256)
T 1nkv_A           20 FTEEKYATLGRVLRMKPGTRILDLGSGS---------------GEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEEL   82 (256)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTT---------------CHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCC---------------CHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhc
Confidence            4455545555555566778999999999               99999999886  479999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      |+.++++++.+|+.+...       .++||+|+....   ..+...+++.+.+.|+|||.+++.+..|..
T Consensus        83 ~~~~~v~~~~~d~~~~~~-------~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~  145 (256)
T 1nkv_A           83 GVSERVHFIHNDAAGYVA-------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQ  145 (256)
T ss_dssp             TCTTTEEEEESCCTTCCC-------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETT
T ss_pred             CCCcceEEEECChHhCCc-------CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccC
Confidence            998899999999976421       478999997433   235688999999999999999997765543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.50  E-value=9.2e-14  Score=118.75  Aligned_cols=108  Identities=11%  Similarity=0.158  Sum_probs=91.4

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++.+|||+|||+               |..+..++...++.++|+++|+++++++.|+++++..|+.++++++.+|+.
T Consensus        20 ~~~~~~vLDlGcG~---------------G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~   84 (197)
T 3eey_A           20 VKEGDTVVDATCGN---------------GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ   84 (197)
T ss_dssp             CCTTCEEEESCCTT---------------SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGG
T ss_pred             CCCCCEEEEcCCCC---------------CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH
Confidence            34567999999999               999999999875568999999999999999999999999888999999987


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEec
Q 022597          197 DSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +.....     .++||+|+.+.+.            ..+.++++.+.++|+|||.+++..
T Consensus        85 ~~~~~~-----~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           85 NMDKYI-----DCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             GGGGTC-----CSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhhhc-----cCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            653322     5789999987531            245679999999999999999864

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.50  E-value=1.5e-13  Score=119.40  Aligned_cols=105  Identities=14%  Similarity=0.175  Sum_probs=86.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..++.++...  ..+|+++|+++++++.|+++++..|+ ++++++++|+.+
T Consensus        53 ~~~~~vLDlgcG~---------------G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~  114 (202)
T 2fpo_A           53 IVDAQCLDCFAGS---------------GALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMS  114 (202)
T ss_dssp             HTTCEEEETTCTT---------------CHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHH
T ss_pred             cCCCeEEEeCCCc---------------CHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHH
Confidence            3677999999999               99999877653  35999999999999999999999998 579999999987


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHh--cccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQ--LIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~--lLkpgG~ivid~v  245 (294)
                      .++.     ..++||+||+|++  ...+.+.++.+.+  +|+|||++++...
T Consensus       115 ~~~~-----~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          115 FLAQ-----KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             HHSS-----CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             HHhh-----cCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            5532     1468999999976  4456778888865  5999999998654

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.50  E-value=3e-13  Score=120.10  Aligned_cols=105  Identities=20%  Similarity=0.226  Sum_probs=88.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..++.++...+ +++|+++|+++++++.|+++++..|+. +++++++|+.+
T Consensus        69 ~~~~~vLDiG~G~---------------G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~  131 (240)
T 1xdz_A           69 NQVNTICDVGAGA---------------GFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAET  131 (240)
T ss_dssp             GGCCEEEEECSSS---------------CTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHH
T ss_pred             CCCCEEEEecCCC---------------CHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHH
Confidence            3678999999999               999999998655 789999999999999999999999987 49999999976


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .....   ...++||+|++.. ...+..+++.+.++|+|||.+++.
T Consensus       132 ~~~~~---~~~~~fD~V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          132 FGQRK---DVRESYDIVTARA-VARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             HTTCT---TTTTCEEEEEEEC-CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hcccc---cccCCccEEEEec-cCCHHHHHHHHHHhcCCCCEEEEE
Confidence            42100   0136899999987 466889999999999999999874

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.50  E-value=1.5e-13  Score=117.76  Aligned_cols=104  Identities=19%  Similarity=0.247  Sum_probs=89.5

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      +|||+|||+               |..+..++.. + +.+++++|+++++++.|+++++..++.++++++.+|+.+..  
T Consensus        46 ~vLdiG~G~---------------G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  106 (219)
T 3dlc_A           46 TCIDIGSGP---------------GALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP--  106 (219)
T ss_dssp             EEEEETCTT---------------SHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS--
T ss_pred             EEEEECCCC---------------CHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC--
Confidence            999999999               9999999987 3 68999999999999999999999999889999999997632  


Q ss_pred             HhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          202 LILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       202 l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      +    ..++||+|+....   ..+...+++.+.+.|+|||.+++.+....
T Consensus       107 ~----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  152 (219)
T 3dlc_A          107 I----EDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGN  152 (219)
T ss_dssp             S----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSS
T ss_pred             C----CcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCc
Confidence            1    2578999998754   34568899999999999999999765443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.50  E-value=9.9e-14  Score=124.39  Aligned_cols=110  Identities=12%  Similarity=0.234  Sum_probs=93.4

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.++.+|||||||+               |..+..++..  ++++|+++|+++.+++.|+++++..|+.++++++.+|+.
T Consensus        44 ~~~~~~vLDiGcG~---------------G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  106 (267)
T 3kkz_A           44 LTEKSLIADIGCGT---------------GGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD  106 (267)
T ss_dssp             CCTTCEEEEETCTT---------------CHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             CCCCCEEEEeCCCC---------------CHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChh
Confidence            45678999999999               9999999987  367999999999999999999999999989999999996


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          197 DSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      +..  +    ..++||+|+....  .-+...+++.+.++|+|||.+++.+..|..
T Consensus       107 ~~~--~----~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  155 (267)
T 3kkz_A          107 DLP--F----RNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSWFT  155 (267)
T ss_dssp             SCC--C----CTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEESS
T ss_pred             hCC--C----CCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeeecC
Confidence            642  1    2578999998654  225788999999999999999998876543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.49  E-value=2e-14  Score=132.41  Aligned_cols=166  Identities=13%  Similarity=0.102  Sum_probs=116.3

Q ss_pred             cCccccccccc-cccccccccccccCCChh-HHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCC
Q 022597           43 KNQFTTNCCVS-SAHDEKYSNKQVISVTPP-LYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA  120 (294)
Q Consensus        43 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~-l~~Y~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~  120 (294)
                      .|.......|+ .+|||.....+..+.++. . .|......+...+++.+..                .++..+....++
T Consensus        56 ~~~~~g~~~~i~~~~y~~~~~~~~~~~~~~~~-~y~~~~f~~~~~~~~~~~~----------------~l~~~l~~~~~~  118 (312)
T 3vc1_A           56 VNLRLGDVDGLYHHHYGIGPVDRAALGDPEHS-EYEKKVIAELHRLESAQAE----------------FLMDHLGQAGPD  118 (312)
T ss_dssp             HHHHHHTTTTCCCCSCCCSCCCHHHHCCTTST-THHHHHHHHHHHHHHHHHH----------------HHHTTSCCCCTT
T ss_pred             chhhcccccchhhhhcCCchhHHHhhcCCCcc-ccchHHHhhhhhHHHHHHH----------------HHHHHhccCCCC
Confidence            34444556677 899998776555444443 3 4554432222222222211                111111113456


Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      .+|||+|||+               |..+..++...  +++|+++|+++++++.|+++++..|+.++++++.+|+.+.. 
T Consensus       119 ~~vLDiGcG~---------------G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-  180 (312)
T 3vc1_A          119 DTLVDAGCGR---------------GGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP-  180 (312)
T ss_dssp             CEEEEESCTT---------------SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-
T ss_pred             CEEEEecCCC---------------CHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC-
Confidence            7999999999               99999999875  47999999999999999999999999989999999997631 


Q ss_pred             HHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          201 ALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                       +    ..++||+|+....  .-+...+++.+.+.|+|||.+++.+....
T Consensus       181 -~----~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  225 (312)
T 3vc1_A          181 -F----DKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWN  225 (312)
T ss_dssp             -C----CTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             -C----CCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence             1    2479999987532  12378999999999999999998765433

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.49  E-value=1e-13  Score=127.01  Aligned_cols=105  Identities=15%  Similarity=0.220  Sum_probs=87.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--CC-CCcEEEEEcch
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLA  195 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--gl-~~~v~~~~gda  195 (294)
                      ++++|||||||+               |..+..+++.. +..+|+++|+|+++++.|++++...  ++ .++++++.+|+
T Consensus        75 ~~~~VLdiG~G~---------------G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~  138 (275)
T 1iy9_A           75 NPEHVLVVGGGD---------------GGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG  138 (275)
T ss_dssp             SCCEEEEESCTT---------------CHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS
T ss_pred             CCCEEEEECCch---------------HHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH
Confidence            567999999999               99999888753 3689999999999999999998752  44 46899999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccc-------hHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRM-------YQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~-------~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+.++..     .++||+|++|.....       ..++++.+.+.|+|||++++..
T Consensus       139 ~~~l~~~-----~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          139 FMHIAKS-----ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             HHHHHTC-----CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHhhC-----CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            8876542     578999999975321       2689999999999999999874

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.49  E-value=1.3e-13  Score=130.20  Aligned_cols=113  Identities=21%  Similarity=0.365  Sum_probs=92.6

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--CC-CCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--gl-~~~v~~~~gd  194 (294)
                      .++++|||||||+               |..+..+++.. +..+|+++|+|+++++.|++++...  |+ ..+++++.+|
T Consensus       119 ~~~~~VLdIG~G~---------------G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D  182 (334)
T 1xj5_A          119 PNPKKVLVIGGGD---------------GGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGD  182 (334)
T ss_dssp             SCCCEEEEETCSS---------------SHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESC
T ss_pred             CCCCEEEEECCCc---------------cHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECC
Confidence            4667999999999               99999998864 3689999999999999999998763  55 4589999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCc----cc---hHHHHHHHHhcccCCeEEEEe-cccCCCc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEK----RM---YQEYFELLLQLIRVGGIIVID-NVLWHGK  250 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~----~~---~~~~~~~~~~lLkpgG~ivid-~vl~~g~  250 (294)
                      +.+.++.+    ..++||+|++|...    ..   +.++++.+.++|+|||+++++ +..|.+.
T Consensus       183 ~~~~l~~~----~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~  242 (334)
T 1xj5_A          183 GVAFLKNA----AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHM  242 (334)
T ss_dssp             HHHHHHTS----CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCH
T ss_pred             HHHHHHhc----cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccH
Confidence            98876543    14689999998641    11   589999999999999999997 6666653

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.48  E-value=1e-13  Score=124.59  Aligned_cols=120  Identities=16%  Similarity=0.158  Sum_probs=98.7

Q ss_pred             CCCCHHHHHHHHHHHhhh-CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQIL-GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~-~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      +..+.+ +.+|..++... ++.+|||+|||+               |..++.++...+  ++|+++|+++++++.|++++
T Consensus        31 ~~~~~d-~~ll~~~~~~~~~~~~vLDlG~G~---------------G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~   92 (259)
T 3lpm_A           31 FSFSID-AVLLAKFSYLPIRKGKIIDLCSGN---------------GIIPLLLSTRTK--AKIVGVEIQERLADMAKRSV   92 (259)
T ss_dssp             BCCCHH-HHHHHHHCCCCSSCCEEEETTCTT---------------THHHHHHHTTCC--CEEEEECCSHHHHHHHHHHH
T ss_pred             ccCcHH-HHHHHHHhcCCCCCCEEEEcCCch---------------hHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHH
Confidence            344444 56677777766 788999999999               999999988743  49999999999999999999


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----------------------cchHHHHHHHHhcccC
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------------------RMYQEYFELLLQLIRV  236 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----------------------~~~~~~~~~~~~lLkp  236 (294)
                      +.+++.++++++++|+.+....+    ..++||+|+.+++-                       ..+..+++.+.++|+|
T Consensus        93 ~~~~~~~~v~~~~~D~~~~~~~~----~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp  168 (259)
T 3lpm_A           93 AYNQLEDQIEIIEYDLKKITDLI----PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ  168 (259)
T ss_dssp             HHTTCTTTEEEECSCGGGGGGTS----CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEE
T ss_pred             HHCCCcccEEEEECcHHHhhhhh----ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC
Confidence            99999999999999998764322    14789999997541                       1246789999999999


Q ss_pred             CeEEEE
Q 022597          237 GGIIVI  242 (294)
Q Consensus       237 gG~ivi  242 (294)
                      ||.+++
T Consensus       169 gG~l~~  174 (259)
T 3lpm_A          169 GGKANF  174 (259)
T ss_dssp             EEEEEE
T ss_pred             CcEEEE
Confidence            999998

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.47  E-value=4.3e-13  Score=118.69  Aligned_cols=105  Identities=19%  Similarity=0.240  Sum_probs=88.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+.+|||||||+               |..++.++...| +..|+|||+++++++.|+++++..|+.+ ++++.+|+.+.
T Consensus        34 ~~~~vLDiGcG~---------------G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~   96 (218)
T 3dxy_A           34 EAPVTLEIGFGM---------------GASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEV   96 (218)
T ss_dssp             CCCEEEEESCTT---------------CHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHH
T ss_pred             CCCeEEEEeeeC---------------hHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHH
Confidence            567999999999               999999999876 7899999999999999999999999874 99999999987


Q ss_pred             HHHHhhcCCCCceeEEEEc---CCc--cc------hHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVD---AEK--RM------YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD---~~~--~~------~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++...   ..++||.|++.   ++.  ..      ...+++.+.+.|+|||++++.
T Consensus        97 l~~~~---~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A           97 LHKMI---PDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             HHHHS---CTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHc---CCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence            66532   25799999885   321  11      236999999999999999874

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.47  E-value=1.2e-12  Score=119.17  Aligned_cols=123  Identities=16%  Similarity=0.192  Sum_probs=100.0

Q ss_pred             HHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC
Q 022597          107 QAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH  186 (294)
Q Consensus       107 ~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~  186 (294)
                      ..+++..++...++.+|||+|||+               |..+..++..++..++|+++|+++++++.+++++++.|+. 
T Consensus        71 ~s~l~~~~l~~~~g~~VLDlgaG~---------------G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-  134 (274)
T 3ajd_A           71 SSMIPPIVLNPREDDFILDMCAAP---------------GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-  134 (274)
T ss_dssp             GGGHHHHHHCCCTTCEEEETTCTT---------------CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHhCCCCcCEEEEeCCCc---------------cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-
Confidence            344555566666778999999999               9999999998875589999999999999999999999987 


Q ss_pred             cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc---------------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK---------------------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~---------------------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +++++.+|+.+....+...  .++||+|++|++.                     ..+.++++.+.++|+|||.+++...
T Consensus       135 ~v~~~~~D~~~~~~~~~~~--~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          135 NTIIINADMRKYKDYLLKN--EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             SEEEEESCHHHHHHHHHHT--TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cEEEEeCChHhcchhhhhc--cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            7999999998765432111  3689999999542                     2357889999999999999999776


Q ss_pred             cC
Q 022597          246 LW  247 (294)
Q Consensus       246 l~  247 (294)
                      .+
T Consensus       213 s~  214 (274)
T 3ajd_A          213 SM  214 (274)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.46  E-value=1.1e-12  Score=108.51  Aligned_cols=105  Identities=19%  Similarity=0.201  Sum_probs=86.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++++|||+|||+               |..+..++...   .+|+++|+++++++.|+++++..++  +++++++|+.+.
T Consensus        41 ~~~~vLD~GcG~---------------G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~  100 (171)
T 1ws6_A           41 RRGRFLDPFAGS---------------GAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVF  100 (171)
T ss_dssp             TCCEEEEETCSS---------------CHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHH
T ss_pred             CCCeEEEeCCCc---------------CHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHH
Confidence            677999999999               99999998864   3499999999999999999999988  799999999886


Q ss_pred             HHHHhhcCCCCceeEEEEcCCc-cchHHHHHHHH--hcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAEK-RMYQEYFELLL--QLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~-~~~~~~~~~~~--~lLkpgG~ivid~v  245 (294)
                      ++.....  .++||+|+.+... ....+.++.+.  ++|+|||++++...
T Consensus       101 ~~~~~~~--~~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  148 (171)
T 1ws6_A          101 LPEAKAQ--GERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             HHHHHHT--TCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             HHhhhcc--CCceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeC
Confidence            6554321  2489999998643 45567777777  99999999998654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.46  E-value=4.1e-13  Score=112.74  Aligned_cols=103  Identities=15%  Similarity=0.206  Sum_probs=88.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-cEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-~v~~~~gda~  196 (294)
                      .++.+|||+|||+               |..+..++..   +.+++++|+++++++.|+++++..++.+ +++++.+|+.
T Consensus        51 ~~~~~vLdiG~G~---------------G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~  112 (194)
T 1dus_A           51 DKDDDILDLGCGY---------------GVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLY  112 (194)
T ss_dssp             CTTCEEEEETCTT---------------SHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTT
T ss_pred             CCCCeEEEeCCCC---------------CHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchh
Confidence            3566999999999               9999988886   5799999999999999999999988875 6999999987


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAE----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.++       .++||+|+++..    ......+++.+.++|+|||.+++...
T Consensus       113 ~~~~-------~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  158 (194)
T 1dus_A          113 ENVK-------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             TTCT-------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccc-------cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            6432       468999999875    34567899999999999999998754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.46  E-value=2.9e-13  Score=125.28  Aligned_cols=105  Identities=15%  Similarity=0.334  Sum_probs=85.8

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH--hCC-CCcEEEEEcch
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGLA  195 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~--~gl-~~~v~~~~gda  195 (294)
                      ++++|||||||+               |..+..+++..+ ..+|+++|+|+++++.|++++..  .++ .++++++.+|+
T Consensus        90 ~~~~VLdiG~G~---------------G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~  153 (296)
T 1inl_A           90 NPKKVLIIGGGD---------------GGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG  153 (296)
T ss_dssp             SCCEEEEEECTT---------------CHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred             CCCEEEEEcCCc---------------CHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH
Confidence            567999999999               999999887643 68999999999999999999875  344 46899999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCcc--------chHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~--------~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+.++..     .++||+|++|....        ...++++.+.+.|+|||++++..
T Consensus       154 ~~~l~~~-----~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          154 AEYVRKF-----KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             HHHGGGC-----SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHhhC-----CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            8765432     47899999987533        34789999999999999999863

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.46  E-value=1.9e-13  Score=123.68  Aligned_cols=119  Identities=20%  Similarity=0.262  Sum_probs=97.1

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH---hCC
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGV  184 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~---~gl  184 (294)
                      +.+|..++...++.+|||+|||+               |..++.++...+ +.+|+++|+++++++.|+++++.   +++
T Consensus        25 ~~lL~~~~~~~~~~~VLDlG~G~---------------G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l   88 (260)
T 2ozv_A           25 AMLLASLVADDRACRIADLGAGA---------------GAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAF   88 (260)
T ss_dssp             HHHHHHTCCCCSCEEEEECCSSS---------------SHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTT
T ss_pred             HHHHHHHhcccCCCEEEEeCChH---------------hHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCC
Confidence            44555555556677999999999               999999999876 68999999999999999999998   899


Q ss_pred             CCcEEEEEcchhhhHHHHhh-cCCCCceeEEEEcCCc---------------------cchHHHHHHHHhcccCCeEEEE
Q 022597          185 SHKVKIKHGLAADSLKALIL-NGEASSYDFAFVDAEK---------------------RMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       185 ~~~v~~~~gda~~~l~~l~~-~~~~~~fD~vfiD~~~---------------------~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .++++++++|+.+..+.... ....++||+|+.+++-                     ..+..+++.+.++|+|||.+++
T Consensus        89 ~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A           89 SARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             GGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             cceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence            88999999999887543211 1124789999998541                     2367889999999999999987

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.45  E-value=2.7e-12  Score=120.86  Aligned_cols=108  Identities=15%  Similarity=0.182  Sum_probs=90.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-cEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-~v~~~~gda~~  197 (294)
                      ++.+|||+|||+               |..++.++..   +.+|+++|+|+++++.|+++++.+|+.+ +++++++|+.+
T Consensus       153 ~~~~VLDlgcGt---------------G~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~  214 (332)
T 2igt_A          153 RPLKVLNLFGYT---------------GVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK  214 (332)
T ss_dssp             SCCEEEEETCTT---------------CHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH
T ss_pred             CCCcEEEccccc---------------CHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHH
Confidence            457999999999               9999999884   4599999999999999999999999986 59999999998


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCc-------------cchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAEK-------------RMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~-------------~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .++.+...  .++||+|++|++.             ..+..+++.+.++|+|||++++....
T Consensus       215 ~l~~~~~~--~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          215 FIQREERR--GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             HHHHHHHH--TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             HHHHHHhc--CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            77654221  3689999999762             23678899999999999998776553

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.44  E-value=5.2e-13  Score=125.12  Aligned_cols=106  Identities=21%  Similarity=0.354  Sum_probs=87.7

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH--hCC-CCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGV-SHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~--~gl-~~~v~~~~gd  194 (294)
                      .++++|||||||+               |..+..+++.. +..+|+++|+|+++++.|+++++.  .++ .++++++.+|
T Consensus       115 ~~~~~VLdiG~G~---------------G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D  178 (321)
T 2pt6_A          115 KEPKNVLVVGGGD---------------GGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIED  178 (321)
T ss_dssp             SSCCEEEEEECTT---------------CHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESC
T ss_pred             CCCCEEEEEcCCc---------------cHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEcc
Confidence            3567999999999               99999988753 368999999999999999999876  344 4689999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCc------cch-HHHHHHHHhcccCCeEEEEec
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEK------RMY-QEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~------~~~-~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +.+.++..     .++||+|++|...      ..+ .++++.+.+.|+|||++++..
T Consensus       179 ~~~~l~~~-----~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          179 ASKFLENV-----TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             HHHHHHHC-----CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhhc-----CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            98876543     5789999998731      113 799999999999999999874

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.44  E-value=9.8e-13  Score=129.49  Aligned_cols=124  Identities=17%  Similarity=0.264  Sum_probs=103.9

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+....++++..++...++.+|||+|||+               |..++.++..++..++|+++|+++++++.+++++++
T Consensus        84 ~vQd~ss~l~a~~L~~~~g~~VLDlgaGp---------------G~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r  148 (464)
T 3m6w_A           84 YIQEPSAQAVGVLLDPKPGERVLDLAAAP---------------GGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER  148 (464)
T ss_dssp             EECCTTTHHHHHHHCCCTTCEEEESSCTT---------------CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHhcCcCCCCEEEEEcCCc---------------CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            34445566777777777888999999999               999999999988678999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccC
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRV  236 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkp  236 (294)
                      .|+.  ++++++|+.+.....     .++||+|++|++..                         .+.++++.+.++|+|
T Consensus       149 ~G~~--v~~~~~Da~~l~~~~-----~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp  221 (464)
T 3m6w_A          149 WGAP--LAVTQAPPRALAEAF-----GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP  221 (464)
T ss_dssp             HCCC--CEEECSCHHHHHHHH-----CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE
T ss_pred             cCCe--EEEEECCHHHhhhhc-----cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9997  999999998765434     57899999997621                         126788899999999


Q ss_pred             CeEEEEecccC
Q 022597          237 GGIIVIDNVLW  247 (294)
Q Consensus       237 gG~ivid~vl~  247 (294)
                      ||.+++..+.+
T Consensus       222 GG~LvysTCs~  232 (464)
T 3m6w_A          222 GGVLVYSTCTF  232 (464)
T ss_dssp             EEEEEEEESCC
T ss_pred             CcEEEEEeccC
Confidence            99999877643

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.44  E-value=3.7e-12  Score=106.06  Aligned_cols=114  Identities=18%  Similarity=0.230  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..+.....+...+...++.+|||+|||+               |..+..++.   ++.+++++|+++++++.|+++++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~---------------G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~   80 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGS---------------GGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKF   80 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCC---------------SHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCC---------------CHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHc
Confidence            4455555555555666778999999999               999999988   3789999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      |+ ++++++.+|+.+.++       .++||+|+.+.. .....+++.+.++  |||.+++...
T Consensus        81 ~~-~~~~~~~~d~~~~~~-------~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A           81 NI-KNCQIIKGRAEDVLD-------KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             TC-CSEEEEESCHHHHGG-------GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             CC-CcEEEEECCcccccc-------CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEec
Confidence            98 469999999976321       368999999887 7788899998888  9999998764

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.44  E-value=4.2e-13  Score=121.10  Aligned_cols=103  Identities=24%  Similarity=0.358  Sum_probs=87.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||||||+               |..++.++...+ +++|+++|+++++++.|+++++..|+.+ ++++++|+.+.
T Consensus        80 ~~~~vLDiG~G~---------------G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~  142 (249)
T 3g89_A           80 GPLRVLDLGTGA---------------GFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVL  142 (249)
T ss_dssp             SSCEEEEETCTT---------------TTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHH
T ss_pred             CCCEEEEEcCCC---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHh
Confidence            467999999999               999999999875 7899999999999999999999999975 99999999765


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ...   ....++||+|+..+. ..+..+++.+.++|+|||.+++
T Consensus       143 ~~~---~~~~~~fD~I~s~a~-~~~~~ll~~~~~~LkpgG~l~~  182 (249)
T 3g89_A          143 ARE---AGHREAYARAVARAV-APLCVLSELLLPFLEVGGAAVA  182 (249)
T ss_dssp             TTS---TTTTTCEEEEEEESS-CCHHHHHHHHGGGEEEEEEEEE
T ss_pred             hcc---cccCCCceEEEECCc-CCHHHHHHHHHHHcCCCeEEEE
Confidence            321   001378999999764 4578899999999999999886

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.44  E-value=5.6e-13  Score=115.99  Aligned_cols=104  Identities=16%  Similarity=0.189  Sum_probs=87.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||||||+               |..++.++...| +.+++++|+++++++.|+++++..|+ ++++++.+|+.+.
T Consensus        41 ~~~~vLDiGcG~---------------G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~  103 (214)
T 1yzh_A           41 DNPIHVEVGSGK---------------GAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDL  103 (214)
T ss_dssp             CCCEEEEESCTT---------------SHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCG
T ss_pred             CCCeEEEEccCc---------------CHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHH
Confidence            456999999999               999999999886 78999999999999999999999998 5799999999763


Q ss_pred             HHHHhhcCCCCceeEEEEcCCcc-----------chHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~-----------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ...+    ..++||+|+++.+..           .+..+++.+.+.|+|||.+++.
T Consensus       104 ~~~~----~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          104 TDYF----EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             GGTS----CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             Hhhc----CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            2111    246899999875422           2478999999999999999884

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.44  E-value=1.7e-12  Score=113.40  Aligned_cols=136  Identities=15%  Similarity=0.183  Sum_probs=100.2

Q ss_pred             hhCCCeEEEEccc-cccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVGVY-TVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~g-~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ..++.+|||+||| +               |..++.++...  +.+|+++|+++++++.|+++++..|+  +++++.+|+
T Consensus        53 ~~~~~~vLDlG~G~~---------------G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~  113 (230)
T 3evz_A           53 LRGGEVALEIGTGHT---------------AMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNG  113 (230)
T ss_dssp             CCSSCEEEEECCTTT---------------CHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSS
T ss_pred             cCCCCEEEEcCCCHH---------------HHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCc
Confidence            4567899999999 9               99999999875  57999999999999999999999998  799999996


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCc----------------------cchHHHHHHHHhcccCCeEEEEecccCCCcccC
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEK----------------------RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD  253 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~----------------------~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~  253 (294)
                      .... .+    ..++||+|+.+++.                      ..+..+++.+.++|+|||.+++--.  ++.   
T Consensus       114 ~~~~-~~----~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~---  183 (230)
T 3evz_A          114 GIIK-GV----VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP--DKE---  183 (230)
T ss_dssp             CSST-TT----CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE--SCH---
T ss_pred             hhhh-hc----ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec--ccH---
Confidence            4221 11    14789999998541                      1157899999999999999987311  110   


Q ss_pred             cccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEE
Q 022597          254 QMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTI  290 (294)
Q Consensus       254 ~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i  290 (294)
                              ....++.+.+. ..++....+....|-.+
T Consensus       184 --------~~~~~~~~~l~-~~g~~~~~~~~~~g~~~  211 (230)
T 3evz_A          184 --------KLLNVIKERGI-KLGYSVKDIKFKVGTRW  211 (230)
T ss_dssp             --------HHHHHHHHHHH-HTTCEEEEEEECCCC-C
T ss_pred             --------hHHHHHHHHHH-HcCCceEEEEecCCCeE
Confidence                    12334444443 33567777777666543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.43  E-value=2.1e-12  Score=111.16  Aligned_cols=101  Identities=11%  Similarity=0.212  Sum_probs=88.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++.. + ..+|+++|+++++++.|+++++..++.+ +++..+|+.+.
T Consensus        60 ~~~~vLDiG~G~---------------G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~  121 (205)
T 3grz_A           60 KPLTVADVGTGS---------------GILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLAD  121 (205)
T ss_dssp             SCCEEEEETCTT---------------SHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTT
T ss_pred             CCCEEEEECCCC---------------CHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEecccccc
Confidence            567999999999               9999998863 3 5699999999999999999999999876 99999998763


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .        .++||+|+.+.....+..+++.+.++|+|||.+++..+
T Consensus       122 ~--------~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  160 (205)
T 3grz_A          122 V--------DGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGI  160 (205)
T ss_dssp             C--------CSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEE
T ss_pred             C--------CCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            1        57899999998877778889999999999999999655

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.43  E-value=5.1e-13  Score=115.20  Aligned_cols=113  Identities=20%  Similarity=0.310  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..|.....+...+...++.+|||+|||+               |+.+..++..   +++|+++|+++++++.|+++++..
T Consensus        61 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~---------------G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~  122 (210)
T 3lbf_A           61 SQPYMVARMTELLELTPQSRVLEIGTGS---------------GYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNL  122 (210)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCC---------------CHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHc
Confidence            3566666666666667788999999999               9999999987   589999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |+. +++++.+|+.+....      .++||+|+++.......   +.+.++|+|||.+++.
T Consensus       123 ~~~-~v~~~~~d~~~~~~~------~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          123 DLH-NVSTRHGDGWQGWQA------RAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLP  173 (210)
T ss_dssp             TCC-SEEEEESCGGGCCGG------GCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEE
T ss_pred             CCC-ceEEEECCcccCCcc------CCCccEEEEccchhhhh---HHHHHhcccCcEEEEE
Confidence            987 699999999774332      47899999986544333   3578999999999985

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.42  E-value=4.4e-12  Score=109.61  Aligned_cols=111  Identities=14%  Similarity=0.170  Sum_probs=92.8

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.+|||+|||+               |..+..++...++..+++++|+++++++.|+++++..++. ++++..+|+
T Consensus        34 ~~~~~~~vLDiG~G~---------------G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~   97 (219)
T 3dh0_A           34 GLKEGMTVLDVGTGA---------------GFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEE   97 (219)
T ss_dssp             TCCTTCEEEESSCTT---------------CTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBT
T ss_pred             CCCCCCEEEEEecCC---------------CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeccc
Confidence            445667999999999               9999999998755789999999999999999999999987 699999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      .+..  +    ..++||+|+....   ..+...+++.+.++|+|||.+++.+....
T Consensus        98 ~~~~--~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  147 (219)
T 3dh0_A           98 NKIP--L----PDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE  147 (219)
T ss_dssp             TBCS--S----CSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ccCC--C----CCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence            7642  1    2578999998654   34568899999999999999999765433

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.42  E-value=1.8e-12  Score=117.46  Aligned_cols=116  Identities=17%  Similarity=0.266  Sum_probs=97.6

Q ss_pred             CHHHHHHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          104 SPDQAQLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .|++..++..++...  ++.+|||+|||+               |..++.++...+ +.+|+++|+++++++.|+++++.
T Consensus        92 r~~te~l~~~~l~~~~~~~~~vLDlG~Gs---------------G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~  155 (276)
T 2b3t_A           92 RPDTECLVEQALARLPEQPCRILDLGTGT---------------GAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQH  155 (276)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTT---------------SHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHhcccCCCEEEEecCCc---------------cHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH
Confidence            566777777777653  567999999999               999999998875 78999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHHHHHHhc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQL  233 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~~~~~~l  233 (294)
                      .|+. +++++++|+.+.++       .++||+|+.+++-                            ..+..+++.+.++
T Consensus       156 ~~~~-~v~~~~~d~~~~~~-------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~  227 (276)
T 2b3t_A          156 LAIK-NIHILQSDWFSALA-------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNA  227 (276)
T ss_dssp             HTCC-SEEEECCSTTGGGT-------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGG
T ss_pred             cCCC-ceEEEEcchhhhcc-------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            9987 69999999876432       4689999998531                            2467888999999


Q ss_pred             ccCCeEEEEe
Q 022597          234 IRVGGIIVID  243 (294)
Q Consensus       234 LkpgG~ivid  243 (294)
                      |+|||++++.
T Consensus       228 LkpgG~l~~~  237 (276)
T 2b3t_A          228 LVSGGFLLLE  237 (276)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCCCCEEEEE
Confidence            9999999986

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.42  E-value=1.4e-12  Score=114.32  Aligned_cols=104  Identities=16%  Similarity=0.159  Sum_probs=86.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||||||+               |..++.++...| +.+++|+|+++++++.|+++++..|+. +++++.+|+.+.
T Consensus        38 ~~~~vLDiGcG~---------------G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l  100 (213)
T 2fca_A           38 DNPIHIEVGTGK---------------GQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTL  100 (213)
T ss_dssp             CCCEEEEECCTT---------------SHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGH
T ss_pred             CCceEEEEecCC---------------CHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHH
Confidence            456999999999               999999999875 789999999999999999999999885 599999999874


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---cc--------chHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAE---KR--------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~--------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ...+    ..++||.|++..+   ..        .+..+++.+.+.|+|||.+++.
T Consensus       101 ~~~~----~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          101 TDVF----EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             HHHC----CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             Hhhc----CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            3222    2468999987532   11        1578999999999999999875

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.42  E-value=1.1e-12  Score=122.20  Aligned_cols=123  Identities=17%  Similarity=0.233  Sum_probs=103.1

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.....+++..++...++.+|||+|||+               |..+..++..++.+++|+++|+++++++.+++++++
T Consensus       101 ~~qd~~s~l~~~~l~~~~g~~VLDlg~G~---------------G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~  165 (315)
T 1ixk_A          101 YIQEASSMYPPVALDPKPGEIVADMAAAP---------------GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR  165 (315)
T ss_dssp             EECCHHHHHHHHHHCCCTTCEEEECCSSC---------------SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH
T ss_pred             EEeCHHHHHHHHHhCCCCCCEEEEeCCCC---------------CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH
Confidence            45566677777777878888999999999               999999999887678999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccC
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRV  236 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkp  236 (294)
                      .|+. +++++++|+.+... .     .++||+|++|++..                         .+.++++.+.++|+|
T Consensus       166 ~g~~-~v~~~~~D~~~~~~-~-----~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp  238 (315)
T 1ixk_A          166 LGVL-NVILFHSSSLHIGE-L-----NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP  238 (315)
T ss_dssp             HTCC-SEEEESSCGGGGGG-G-----CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             hCCC-eEEEEECChhhccc-c-----cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9986 59999999976532 2     46899999986511                         125888999999999


Q ss_pred             CeEEEEeccc
Q 022597          237 GGIIVIDNVL  246 (294)
Q Consensus       237 gG~ivid~vl  246 (294)
                      ||.+++....
T Consensus       239 GG~lv~stcs  248 (315)
T 1ixk_A          239 GGILVYSTCS  248 (315)
T ss_dssp             EEEEEEEESC
T ss_pred             CCEEEEEeCC
Confidence            9999997763

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.41  E-value=1.5e-12  Score=117.95  Aligned_cols=118  Identities=21%  Similarity=0.318  Sum_probs=99.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +.|.....+...+.+.++.+|||+|||+               |..++.++..+.++++|+++|+++++++.|+++++..
T Consensus        96 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~---------------G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~  160 (277)
T 1o54_A           96 VYPKDSSFIAMMLDVKEGDRIIDTGVGS---------------GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW  160 (277)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEEECCcC---------------CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc
Confidence            4555555566666777788999999999               9999999998665789999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      |+.++++++.+|+.+.++       .++||+||+|.+  ....+++.+.+.|+|||.+++..
T Consensus       161 ~~~~~v~~~~~d~~~~~~-------~~~~D~V~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          161 GLIERVTIKVRDISEGFD-------EKDVDALFLDVP--DPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             TCGGGEEEECCCGGGCCS-------CCSEEEEEECCS--CGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEEECCHHHccc-------CCccCEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            987789999999976521       468999999874  33578889999999999999864

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.41  E-value=8.1e-13  Score=113.51  Aligned_cols=100  Identities=11%  Similarity=0.153  Sum_probs=87.8

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...+ +.+++++|+++++++.|+++++..++.+ ++++++|+.+.
T Consensus        65 ~~~~vLDiG~G~---------------G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~  127 (207)
T 1jsx_A           65 QGERFIDVGTGP---------------GLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEF  127 (207)
T ss_dssp             CSSEEEEETCTT---------------TTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTS
T ss_pred             CCCeEEEECCCC---------------CHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhC
Confidence            367999999999               999999999875 7899999999999999999999999876 99999999764


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .       ..++||+|+... ...+..+++.+.+.|+|||.+++.
T Consensus       128 ~-------~~~~~D~i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          128 P-------SEPPFDGVISRA-FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             C-------CCSCEEEEECSC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             C-------ccCCcCEEEEec-cCCHHHHHHHHHHhcCCCcEEEEE
Confidence            2       146899999765 356789999999999999999986

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.41  E-value=3.1e-13  Score=115.54  Aligned_cols=120  Identities=20%  Similarity=0.290  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHHhh----hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          104 SPDQAQLLAMLVQI----LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       104 ~~~~~~lL~~l~~~----~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      .|+...++..++..    .++.+|||+|||+               |..+..++...+ +.+++++|+++++++.|++++
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~---------------G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~   74 (215)
T 4dzr_A           11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGS---------------GCIAVSIALACP-GVSVTAVDLSMDALAVARRNA   74 (215)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTEEEEEEESSB---------------CHHHHHHHHHCT-TEEEEEEECC-----------
T ss_pred             CccHHHHHHHHHHHhhhcCCCCEEEEecCCH---------------hHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHH
Confidence            45566666666554    4567999999999               999999999875 679999999999999999999


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----------------------------cchHHHHHHH
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------------------------RMYQEYFELL  230 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----------------------------~~~~~~~~~~  230 (294)
                      +..+.  +++++++|+.+.++....  ..++||+|+.+++-                             ..|..+++.+
T Consensus        75 ~~~~~--~~~~~~~d~~~~~~~~~~--~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  150 (215)
T 4dzr_A           75 ERFGA--VVDWAAADGIEWLIERAE--RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALP  150 (215)
T ss_dssp             ----------CCHHHHHHHHHHHHH--TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCC
T ss_pred             HHhCC--ceEEEEcchHhhhhhhhh--ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHH
Confidence            98887  799999999875543111  13789999997541                             0126777888


Q ss_pred             HhcccCCeE-EEEe
Q 022597          231 LQLIRVGGI-IVID  243 (294)
Q Consensus       231 ~~lLkpgG~-ivid  243 (294)
                      .++|+|||+ +++.
T Consensus       151 ~~~LkpgG~l~~~~  164 (215)
T 4dzr_A          151 PYVLARGRAGVFLE  164 (215)
T ss_dssp             GGGBCSSSEEEEEE
T ss_pred             HHHhcCCCeEEEEE
Confidence            899999999 5553

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.41  E-value=2.3e-12  Score=114.09  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=96.4

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +.+.....+...+...++.+|||+|||+               |..+..++..+.++++|+++|+++++++.|+++++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~---------------G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~  144 (258)
T 2pwy_A           80 TYPKDASAMVTLLDLAPGMRVLEAGTGS---------------GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAF  144 (258)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHcCCCCCCEEEEECCCc---------------CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            4455445555556667788999999999               9999999998655789999999999999999999988


Q ss_pred             -CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          183 -GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       183 -gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                       | .+++++..+|+.+.  .+    +.++||+|++|.+  ....+++.+.+.|+|||.+++..
T Consensus       145 ~g-~~~v~~~~~d~~~~--~~----~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          145 WQ-VENVRFHLGKLEEA--EL----EEAAYDGVALDLM--EPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             CC-CCCEEEEESCGGGC--CC----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cC-CCCEEEEECchhhc--CC----CCCCcCEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence             8 56799999998764  01    1468999999864  34578899999999999998854

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.40  E-value=7.1e-13  Score=117.02  Aligned_cols=105  Identities=18%  Similarity=0.204  Sum_probs=83.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||||||+               |..+..++...  ..+|+++|+++++++.|+++.+..+  .+++++.+|+.+.
T Consensus        60 ~~~~vLDiGcGt---------------G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~  120 (236)
T 1zx0_A           60 KGGRVLEVGFGM---------------AIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDV  120 (236)
T ss_dssp             TCEEEEEECCTT---------------SHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHH
T ss_pred             CCCeEEEEeccC---------------CHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHh
Confidence            456999999999               99999986532  3589999999999999999888766  5799999999875


Q ss_pred             HHHHhhcCCCCceeEEEEcCC--------ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFVDAE--------KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~--------~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ++.+    ..++||+|+.|..        ......+++.+.++|||||++++-+..
T Consensus       121 ~~~~----~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          121 APTL----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             GGGS----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             hccc----CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            4322    2578999998422        122446789999999999999987654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.40  E-value=3.3e-12  Score=122.21  Aligned_cols=113  Identities=19%  Similarity=0.258  Sum_probs=96.2

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC-CCcEEEEE
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-SHKVKIKH  192 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl-~~~v~~~~  192 (294)
                      +....++++|||+|||+               |..++.++...  ..+|+++|+++++++.|+++++.+|+ .++++++.
T Consensus       215 l~~~~~~~~VLDl~cG~---------------G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~  277 (396)
T 3c0k_A          215 TRRYVENKRVLNCFSYT---------------GGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR  277 (396)
T ss_dssp             HHHHCTTCEEEEESCTT---------------CSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             HHHhhCCCeEEEeeccC---------------CHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEE
Confidence            34446778999999999               99999998852  46999999999999999999999999 66899999


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +|+.+.++.+...  .++||+|++|++.            ..+.+++..+.++|+|||++++...
T Consensus       278 ~D~~~~~~~~~~~--~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          278 DDVFKLLRTYRDR--GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             SCHHHHHHHHHHT--TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCHHHHHHHHHhc--CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9999887765332  3689999999864            5688999999999999999998654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.40  E-value=2.4e-12  Score=120.00  Aligned_cols=120  Identities=16%  Similarity=0.246  Sum_probs=92.8

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..|.....+...+.+.++.+|||+|||+               |+.+..++...++.++|+++|+++++++.|+++++..
T Consensus        89 ~~~~~~~~~l~~l~~~~g~~VLDiG~G~---------------G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~  153 (336)
T 2b25_A           89 TFPKDINMILSMMDINPGDTVLEAGSGS---------------GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHW  153 (336)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTT---------------SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcCCCCCCEEEEeCCCc---------------CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHh
Confidence            4555445555555777888999999999               9999999998655789999999999999999999874


Q ss_pred             C----------CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          183 G----------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       183 g----------l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |          ..++++++.+|+.+....+.    .++||+||+|...  ...+++.+.+.|+|||.+++.
T Consensus       154 ~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~~----~~~fD~V~~~~~~--~~~~l~~~~~~LkpgG~lv~~  218 (336)
T 2b25_A          154 RDSWKLSHVEEWPDNVDFIHKDISGATEDIK----SLTFDAVALDMLN--PHVTLPVFYPHLKHGGVCAVY  218 (336)
T ss_dssp             HHHHTTTCSSCCCCCEEEEESCTTCCC-----------EEEEEECSSS--TTTTHHHHGGGEEEEEEEEEE
T ss_pred             hcccccccccccCCceEEEECChHHcccccC----CCCeeEEEECCCC--HHHHHHHHHHhcCCCcEEEEE
Confidence            3          34689999999987543321    3579999998653  334788999999999999864

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.39  E-value=2e-12  Score=116.88  Aligned_cols=103  Identities=20%  Similarity=0.293  Sum_probs=88.0

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      +.+|||||||+               |..+..++..   +.+|+++|+++++++.|+++++..|+.++++++.+|+.+..
T Consensus        69 ~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  130 (285)
T 4htf_A           69 KLRVLDAGGGE---------------GQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA  130 (285)
T ss_dssp             CCEEEEETCTT---------------CHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG
T ss_pred             CCEEEEeCCcc---------------hHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh
Confidence            56999999999               9999999886   57999999999999999999999999889999999997754


Q ss_pred             HHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          200 KALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.     ..++||+|+....   ..+...+++.+.++|+|||++++...
T Consensus       131 ~~-----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          131 SH-----LETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             GG-----CSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hh-----cCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            22     1579999998754   34568899999999999999998764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.39  E-value=2.1e-12  Score=112.87  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=86.6

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC----CCcEEEEEeCChHHHHHHHHHHHHhCC----CCcE
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP----ESGCLVACERDARSLEVAKKYYERAGV----SHKV  188 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~----~~~~v~~id~~~~~~~~A~~~~~~~gl----~~~v  188 (294)
                      ..++.+|||||||+               |+.+..++....    +.++|+++|+++++++.|+++++..++    .+++
T Consensus        78 ~~~~~~VLdiG~G~---------------G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v  142 (227)
T 2pbf_A           78 LKPGSRAIDVGSGS---------------GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNF  142 (227)
T ss_dssp             SCTTCEEEEESCTT---------------SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTE
T ss_pred             CCCCCEEEEECCCC---------------CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCE
Confidence            45667999999999               999999999875    567999999999999999999999884    4579


Q ss_pred             EEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          189 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +++.+|+.+..+....  ..++||+|+++.....   +++.+.+.|+|||.+++.
T Consensus       143 ~~~~~d~~~~~~~~~~--~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          143 KIIHKNIYQVNEEEKK--ELGLFDAIHVGASASE---LPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             EEEECCGGGCCHHHHH--HHCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEE
T ss_pred             EEEECChHhcccccCc--cCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEE
Confidence            9999999874311000  0368999999876543   357788999999999886

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.39  E-value=7.9e-13  Score=120.82  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=90.1

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++++|||+|||+               |..++.++...+  .+|+++|+|+++++.|+++++.+|+.++++++++|+.+.
T Consensus       125 ~~~~VLDlgcG~---------------G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~  187 (278)
T 2frn_A          125 PDELVVDMFAGI---------------GHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF  187 (278)
T ss_dssp             TTCEEEETTCTT---------------TTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC
T ss_pred             CCCEEEEecccC---------------CHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHh
Confidence            477999999999               999999998754  289999999999999999999999998899999999876


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ..       .++||+|++|++. ...++++.+.+.|+|||++++....
T Consensus       188 ~~-------~~~fD~Vi~~~p~-~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          188 PG-------ENIADRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             CC-------CSCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             cc-------cCCccEEEECCch-hHHHHHHHHHHHCCCCeEEEEEEee
Confidence            43       4789999999763 4467888999999999999997764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.39  E-value=1.5e-12  Score=127.94  Aligned_cols=125  Identities=17%  Similarity=0.222  Sum_probs=105.2

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+....++++..++...++.+|||+|||+               |..++.++..++..++|+++|++++.++.+++++++
T Consensus        88 ~vQd~ss~l~~~~L~~~~g~~VLDlcaGp---------------Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r  152 (456)
T 3m4x_A           88 YSQEPSAMIVGTAAAAKPGEKVLDLCAAP---------------GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIER  152 (456)
T ss_dssp             EECCTTTHHHHHHHCCCTTCEEEESSCTT---------------CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHcCCCCCCEEEEECCCc---------------CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            45555677778888888889999999999               999999999887678999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccC
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRV  236 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkp  236 (294)
                      .|+. +++++++|+.+..+..     .++||+|++|++..                         ...++++.+.++|+|
T Consensus       153 ~g~~-nv~v~~~Da~~l~~~~-----~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp  226 (456)
T 3m4x_A          153 WGVS-NAIVTNHAPAELVPHF-----SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN  226 (456)
T ss_dssp             HTCS-SEEEECCCHHHHHHHH-----TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE
T ss_pred             cCCC-ceEEEeCCHHHhhhhc-----cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9997 5999999998765444     57899999998610                         123778888999999


Q ss_pred             CeEEEEecccC
Q 022597          237 GGIIVIDNVLW  247 (294)
Q Consensus       237 gG~ivid~vl~  247 (294)
                      ||.++...+.+
T Consensus       227 GG~LvYsTCs~  237 (456)
T 3m4x_A          227 KGQLIYSTCTF  237 (456)
T ss_dssp             EEEEEEEESCC
T ss_pred             CcEEEEEEeec
Confidence            99999877643

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.39  E-value=2.3e-12  Score=118.37  Aligned_cols=106  Identities=20%  Similarity=0.331  Sum_probs=87.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C-CCcEEEEEcch
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLA  195 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l-~~~v~~~~gda  195 (294)
                      ++++|||||||+               |..+..+++.. +..+++++|+|+++++.|++++...+  + .++++++.+|+
T Consensus        78 ~~~~VLdiG~G~---------------G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~  141 (283)
T 2i7c_A           78 EPKNVLVVGGGD---------------GGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA  141 (283)
T ss_dssp             SCCEEEEEECTT---------------SHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH
T ss_pred             CCCeEEEEeCCc---------------CHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECCh
Confidence            567999999999               99999888753 36899999999999999999987542  2 46899999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCc------cch-HHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEK------RMY-QEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~------~~~-~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.++..     .++||+|++|...      ..+ .++++.+.+.|+|||++++...
T Consensus       142 ~~~l~~~-----~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          142 SKFLENV-----TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             HHHHHHC-----CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHHHHhC-----CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            8876653     5789999998641      112 7999999999999999998743

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.39  E-value=4.5e-13  Score=122.98  Aligned_cols=109  Identities=15%  Similarity=0.089  Sum_probs=91.2

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++.+|||||||+               |..+..++....++++|+++|+++++++.|+++++..|+.++++++.+|+.
T Consensus       116 l~~~~~vLDiGcG~---------------G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  180 (305)
T 3ocj_A          116 LRPGCVVASVPCGW---------------MSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW  180 (305)
T ss_dssp             CCTTCEEEETTCTT---------------CHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGG
T ss_pred             CCCCCEEEEecCCC---------------CHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchh
Confidence            45677999999999               999998874444578999999999999999999999999889999999998


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          197 DSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      +...       .++||+|+....      ......+++.+.+.|+|||.+++.+...
T Consensus       181 ~~~~-------~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          181 KLDT-------REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             GCCC-------CSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             cCCc-------cCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            7421       378999998642      3334568999999999999999988653

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.38  E-value=2.2e-12  Score=116.19  Aligned_cols=119  Identities=22%  Similarity=0.286  Sum_probs=97.2

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +.|.....+...+.+.++.+|||+|||+               |..+..++..+.++++|+++|+++++++.|+++++..
T Consensus        83 ~~~~~~~~i~~~~~~~~~~~vLdiG~G~---------------G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  147 (280)
T 1i9g_A           83 IYPKDAAQIVHEGDIFPGARVLEAGAGS---------------GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC  147 (280)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH
T ss_pred             ecHHHHHHHHHHcCCCCCCEEEEEcccc---------------cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            5565555555556667778999999999               9999999997655789999999999999999999988


Q ss_pred             -C-CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          183 -G-VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       183 -g-l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                       | +.++++++.+|+.+..  +    +.++||+||++..  +..++++.+.+.|+|||.+++..
T Consensus       148 ~g~~~~~v~~~~~d~~~~~--~----~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          148 YGQPPDNWRLVVSDLADSE--L----PDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             HTSCCTTEEEECSCGGGCC--C----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCCcEEEEECchHhcC--C----CCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence             5 5568999999987641  1    1468999999875  34578999999999999999854

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.38  E-value=3.8e-12  Score=121.87  Aligned_cols=109  Identities=16%  Similarity=0.178  Sum_probs=91.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-cEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-~v~~~~gda~  196 (294)
                      .++++|||+|||+               |..++.++...  ..+|+++|+++++++.|+++++.+|+.+ +++++.+|+.
T Consensus       211 ~~~~~VLDl~cGt---------------G~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~  273 (385)
T 2b78_A          211 AAGKTVLNLFSYT---------------AAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF  273 (385)
T ss_dssp             TBTCEEEEETCTT---------------THHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH
T ss_pred             cCCCeEEEEeecc---------------CHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH
Confidence            5678999999999               99999998742  3589999999999999999999999976 8999999999


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.++.+...  ..+||+|++|++.            ..|.++++.+.++|+|||++++...
T Consensus       274 ~~l~~~~~~--~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          274 DYFKYARRH--HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             HHHHHHHHT--TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHh--CCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            887765432  3589999999763            2366677888999999999998754

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.38  E-value=1.3e-12  Score=119.16  Aligned_cols=112  Identities=10%  Similarity=0.082  Sum_probs=94.0

Q ss_pred             HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcE
Q 022597          109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  188 (294)
Q Consensus       109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v  188 (294)
                      +.+..+....++.+|||+|||+               |..++.++...+ .++|+++|+++++++.|+++++.+|+. ++
T Consensus       109 e~~~~~~~~~~~~~VLDlgcG~---------------G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~-~~  171 (272)
T 3a27_A          109 ERKRMAFISNENEVVVDMFAGI---------------GYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLN-NV  171 (272)
T ss_dssp             HHHHHHTSCCTTCEEEETTCTT---------------TTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCS-SE
T ss_pred             HHHHHHHhcCCCCEEEEecCcC---------------CHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CE
Confidence            3333333445677999999999               999999999865 679999999999999999999999987 48


Q ss_pred             EEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          189 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +++.+|+.+. +.      .++||+|++|++. .+.++++.+.+.|+|||++++...
T Consensus       172 ~~~~~d~~~~-~~------~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          172 IPILADNRDV-EL------KDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             EEEESCGGGC-CC------TTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECChHHc-Cc------cCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEc
Confidence            8999999875 32      3689999999875 677889999999999999998765

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.38  E-value=5e-12  Score=116.25  Aligned_cols=116  Identities=16%  Similarity=0.389  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHHHHhh---hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQI---LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       103 v~~~~~~lL~~l~~~---~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      -.|++..++..+...   .++.+|||+|||+               |..++.++.. + +.+|+++|+|+++++.|++++
T Consensus       104 pr~~te~lv~~~l~~~~~~~~~~vLDlG~Gs---------------G~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~  166 (284)
T 1nv8_A          104 PRPETEELVELALELIRKYGIKTVADIGTGS---------------GAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNA  166 (284)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCEEEEESCTT---------------SHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHH
T ss_pred             cChhHHHHHHHHHHHhcccCCCEEEEEeCch---------------hHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHH
Confidence            456666666666543   3567999999999               9999999998 4 789999999999999999999


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCce---eEEEEcCCccc----------------------hHHHHHHHH-hc
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSY---DFAFVDAEKRM----------------------YQEYFELLL-QL  233 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~f---D~vfiD~~~~~----------------------~~~~~~~~~-~l  233 (294)
                      +..|+.++++++++|+.+.+        .++|   |+|+.+++.-.                      -..+++.+. +.
T Consensus       167 ~~~~l~~~v~~~~~D~~~~~--------~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~  238 (284)
T 1nv8_A          167 ERHGVSDRFFVRKGEFLEPF--------KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRY  238 (284)
T ss_dssp             HHTTCTTSEEEEESSTTGGG--------GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHC
T ss_pred             HHcCCCCceEEEECcchhhc--------ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhc
Confidence            99999888999999998743        2468   99999854110                      126889999 99


Q ss_pred             ccCCeEEEEe
Q 022597          234 IRVGGIIVID  243 (294)
Q Consensus       234 LkpgG~ivid  243 (294)
                      |+|||.+++.
T Consensus       239 l~pgG~l~~e  248 (284)
T 1nv8_A          239 DTSGKIVLME  248 (284)
T ss_dssp             CCTTCEEEEE
T ss_pred             CCCCCEEEEE
Confidence            9999999984

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.38  E-value=5.4e-12  Score=129.82  Aligned_cols=122  Identities=20%  Similarity=0.245  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597          105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV  184 (294)
Q Consensus       105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl  184 (294)
                      .++...-..+....++++|||+||||               |..++.++...  ..+|+++|+|+.+++.|+++++.+|+
T Consensus       525 ~d~r~~r~~l~~~~~g~~VLDlg~Gt---------------G~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl  587 (703)
T 3v97_A          525 LDHRIARRMLGQMSKGKDFLNLFSYT---------------GSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGL  587 (703)
T ss_dssp             GGGHHHHHHHHHHCTTCEEEEESCTT---------------CHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHhcCCCcEEEeeech---------------hHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            34444445555666888999999999               99999988742  46799999999999999999999999


Q ss_pred             C-CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--------------cchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          185 S-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       185 ~-~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--------------~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      . ++++++++|+.+.++..     .++||+|++|++.              +.|.+++..+.++|+|||++++....+.
T Consensus       588 ~~~~v~~i~~D~~~~l~~~-----~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~  661 (703)
T 3v97_A          588 TGRAHRLIQADCLAWLREA-----NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRG  661 (703)
T ss_dssp             CSTTEEEEESCHHHHHHHC-----CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTT
T ss_pred             CccceEEEecCHHHHHHhc-----CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc
Confidence            7 68999999999887653     5789999999862              3578889999999999999998877543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.38  E-value=3.9e-12  Score=116.12  Aligned_cols=109  Identities=16%  Similarity=0.109  Sum_probs=87.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh-CCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~-gl~~~v~~~~gda~~  197 (294)
                      ++.+|||||||+               |..+..++..++++.+|+++|+++.+++.|+++++.. +...+++++++|+.+
T Consensus        36 ~~~~vLDiGcG~---------------G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           36 ERKLLVDVGCGP---------------GTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD  100 (299)
T ss_dssp             CCSEEEEETCTT---------------THHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred             CCCEEEEECCCC---------------CHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence            567999999999               9999999988755899999999999999999999987 566789999999976


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ....-......++||+|++...  .-+...+++.+.+.|+|||.+++
T Consensus       101 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          101 FKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             CGGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            4211000001278999998643  11778999999999999999998

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=2.4e-12  Score=121.02  Aligned_cols=103  Identities=20%  Similarity=0.198  Sum_probs=86.3

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      +|||||||+               |..+.++++..+ +.+|++||+|+++++.|++++... ...+++++.+|+.+.++.
T Consensus        92 rVLdIG~G~---------------G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~-~~~rv~v~~~Da~~~l~~  154 (317)
T 3gjy_A           92 RITHLGGGA---------------CTMARYFADVYP-QSRNTVVELDAELARLSREWFDIP-RAPRVKIRVDDARMVAES  154 (317)
T ss_dssp             EEEEESCGG---------------GHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCC-CTTTEEEEESCHHHHHHT
T ss_pred             EEEEEECCc---------------CHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhcccc-CCCceEEEECcHHHHHhh
Confidence            999999999               999999999876 669999999999999999998643 246899999999987754


Q ss_pred             HhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEecc
Q 022597          202 LILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       202 l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .    ..++||+||+|....       ...++|+.+.+.|+|||++++...
T Consensus       155 ~----~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          155 F----TPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             C----CTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c----cCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            3    147899999986421       137899999999999999998653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.38  E-value=1.7e-12  Score=120.41  Aligned_cols=117  Identities=26%  Similarity=0.366  Sum_probs=95.4

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..|.....+...+...++.+|||||||+               |..+..++...+.+++|+++|+++++++.|+++++..
T Consensus        59 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~---------------G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~  123 (317)
T 1dl5_A           59 SQPSLMALFMEWVGLDKGMRVLEIGGGT---------------GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL  123 (317)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEecCCc---------------hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            4556555555566666788999999999               9999999998764688999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      |+.+ ++++.+|+.+.++.      .++||+|+++.......   +.+.+.|+|||.+++..
T Consensus       124 g~~~-v~~~~~d~~~~~~~------~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          124 GIEN-VIFVCGDGYYGVPE------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             TCCS-EEEEESCGGGCCGG------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEB
T ss_pred             CCCC-eEEEECChhhcccc------CCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEE
Confidence            9875 99999999874331      36899999987644433   56788999999999964

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.38  E-value=3.6e-12  Score=121.90  Aligned_cols=111  Identities=23%  Similarity=0.367  Sum_probs=94.6

Q ss_pred             hhh-CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          116 QIL-GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       116 ~~~-~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ... ++++|||+|||+               |..++.++.. + ..+|+++|+++++++.|+++++.+|+.++++++.+|
T Consensus       213 ~~~~~~~~VLDl~~G~---------------G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d  275 (396)
T 2as0_A          213 KWVQPGDRVLDVFTYT---------------GGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGS  275 (396)
T ss_dssp             GGCCTTCEEEETTCTT---------------THHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESC
T ss_pred             HHhhCCCeEEEecCCC---------------CHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECC
Confidence            444 678999999999               9999999885 2 469999999999999999999999998789999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.+.++.+...  .++||+|++|++.            ..+.+++..+.++|+|||++++...
T Consensus       276 ~~~~~~~~~~~--~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          276 AFEEMEKLQKK--GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             HHHHHHHHHHT--TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHhh--CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            99887655322  3689999999874            5578899999999999998887654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.37  E-value=2.5e-12  Score=116.75  Aligned_cols=110  Identities=14%  Similarity=0.224  Sum_probs=92.5

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.+|||||||+               |..+..++...  +.+|+++|+++++++.|+++++..|+.++++++.+|+
T Consensus        79 ~~~~~~~vLDiGcG~---------------G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~  141 (297)
T 2o57_A           79 VLQRQAKGLDLGAGY---------------GGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF  141 (297)
T ss_dssp             CCCTTCEEEEETCTT---------------SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT
T ss_pred             CCCCCCEEEEeCCCC---------------CHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc
Confidence            445677999999999               99999999876  4699999999999999999999999988999999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      .+..  +    +.++||+|+....   ..+...+++.+.+.|+|||.+++.+..+.
T Consensus       142 ~~~~--~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  191 (297)
T 2o57_A          142 LEIP--C----EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  191 (297)
T ss_dssp             TSCS--S----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             ccCC--C----CCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence            7631  1    2478999997643   24478999999999999999999876543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.37  E-value=2.6e-12  Score=113.09  Aligned_cols=117  Identities=18%  Similarity=0.187  Sum_probs=97.7

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.|.....+...+...++.+|||+|||+               |..+..++..   +.+++++|+++++++.|+++++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~---------------G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~  135 (248)
T 2yvl_A           74 IIYPKDSFYIALKLNLNKEKRVLEFGTGS---------------GALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKK  135 (248)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhcCCCCCCEEEEeCCCc---------------cHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHH
Confidence            35576666676777777888999999999               9999999987   57999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .++.+++++..+|+.+...      ..++||+||.+.+  ....+++.+.+.|+|||.+++..
T Consensus       136 ~~~~~~~~~~~~d~~~~~~------~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          136 FNLGKNVKFFNVDFKDAEV------PEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             TTCCTTEEEECSCTTTSCC------CTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             cCCCCcEEEEEcChhhccc------CCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            9987889999999876420      1468999999865  34577889999999999998754

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.37  E-value=3.2e-12  Score=121.94  Aligned_cols=110  Identities=25%  Similarity=0.368  Sum_probs=94.5

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      +... ++++|||+|||+               |..++.++..   ..+|+++|+++++++.|+++++.+|+.+ ++++.+
T Consensus       205 ~~~~-~~~~VLDlg~G~---------------G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~  264 (382)
T 1wxx_A          205 MERF-RGERALDVFSYA---------------GGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEA  264 (382)
T ss_dssp             GGGC-CEEEEEEETCTT---------------THHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEES
T ss_pred             HHhc-CCCeEEEeeecc---------------CHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEEC
Confidence            3344 677999999999               9999999987   4799999999999999999999999976 999999


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      |+.+.++.+...  .++||+|++|++.            ..+.+++..+.++|+|||++++...
T Consensus       265 d~~~~~~~~~~~--~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          265 NAFDLLRRLEKE--GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             CHHHHHHHHHHT--TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CHHHHHHHHHhc--CCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            999887765332  3689999999874            5578899999999999999998755

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.37  E-value=2.5e-12  Score=111.20  Aligned_cols=116  Identities=20%  Similarity=0.314  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 022597          104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG  183 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g  183 (294)
                      .|.....+...+...++.+|||+|||+               |+.+..++...++.++|+++|+++++++.|+++++..|
T Consensus        62 ~~~~~~~~~~~~~~~~~~~vLdiG~G~---------------G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~  126 (215)
T 2yxe_A           62 AIHMVGMMCELLDLKPGMKVLEIGTGC---------------GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG  126 (215)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhhCCCCCCEEEEECCCc---------------cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            344444444445556677999999999               99999999987546899999999999999999999988


Q ss_pred             CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +.+ +++..+|..+.++.      .++||+|+++.......   +.+.++|+|||.+++.-
T Consensus       127 ~~~-v~~~~~d~~~~~~~------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          127 YDN-VIVIVGDGTLGYEP------LAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             CTT-EEEEESCGGGCCGG------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             CCC-eEEEECCcccCCCC------CCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEEE
Confidence            864 99999998543321      36899999987644333   47889999999999863

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.37  E-value=1.8e-11  Score=110.18  Aligned_cols=102  Identities=16%  Similarity=0.248  Sum_probs=87.5

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..++.+++.   +.+|+++|+++.+++.|+++++.+++.  +++..+|..+
T Consensus       119 ~~~~~VLDiGcG~---------------G~l~~~la~~---g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~  178 (254)
T 2nxc_A          119 RPGDKVLDLGTGS---------------GVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEA  178 (254)
T ss_dssp             CTTCEEEEETCTT---------------SHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHH
T ss_pred             CCCCEEEEecCCC---------------cHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhh
Confidence            3567999999999               9999988774   349999999999999999999999886  8999999876


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .++       .++||+|+.+........+++.+.++|+|||.+++..+.
T Consensus       179 ~~~-------~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          179 ALP-------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             HGG-------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cCc-------CCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence            421       468999999887667788999999999999999997653

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.37  E-value=1.2e-12  Score=119.00  Aligned_cols=108  Identities=19%  Similarity=0.292  Sum_probs=91.5

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.+|||||||+               |..+..++...+.+++|+++|+++.+++.|+++++..+.  +++++.+|+
T Consensus        19 ~~~~~~~vLDiGcG~---------------G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~   81 (284)
T 3gu3_A           19 KITKPVHIVDYGCGY---------------GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDA   81 (284)
T ss_dssp             CCCSCCEEEEETCTT---------------THHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCT
T ss_pred             ccCCCCeEEEecCCC---------------CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcch
Confidence            345677999999999               999999999887668999999999999999999987665  799999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      .+...       .++||+|++...   ..+...+++.+.+.|+|||.+++.+..|
T Consensus        82 ~~~~~-------~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  129 (284)
T 3gu3_A           82 TEIEL-------NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW  129 (284)
T ss_dssp             TTCCC-------SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             hhcCc-------CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecch
Confidence            76321       468999998754   3456899999999999999999877653

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.37  E-value=1.6e-12  Score=119.13  Aligned_cols=114  Identities=18%  Similarity=0.300  Sum_probs=88.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC-------------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-------------  185 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~-------------  185 (294)
                      .+++|||||||+               |..++.++...+ +.+|+++|+++.+++.|+++++..+..             
T Consensus        46 ~~~~VLDiGCG~---------------G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~  109 (292)
T 3g07_A           46 RGRDVLDLGCNV---------------GHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDP  109 (292)
T ss_dssp             TTSEEEEESCTT---------------CHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC-------------------
T ss_pred             CCCcEEEeCCCC---------------CHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccc
Confidence            567999999999               999999999886 579999999999999999998766533             


Q ss_pred             --------------------------------------------CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--
Q 022597          186 --------------------------------------------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--  219 (294)
Q Consensus       186 --------------------------------------------~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--  219 (294)
                                                                  ++++++++|+.+....+.. ...++||+|+....  
T Consensus       110 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~-~~~~~fD~I~~~~vl~  188 (292)
T 3g07_A          110 GAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVE-AQTPEYDVVLCLSLTK  188 (292)
T ss_dssp             --------------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHT-TCCCCEEEEEEESCHH
T ss_pred             ccccccccccccccccccchhhhccCccccccccccccccccccccceEEecccccCcccccc-ccCCCcCEEEEChHHH
Confidence                                                        5899999998743322211 12579999998653  


Q ss_pred             -------ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          220 -------KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       220 -------~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                             ......+|+.+.++|+|||++++..--|..
T Consensus       189 ~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~  225 (292)
T 3g07_A          189 WVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSS  225 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHH
T ss_pred             HhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchh
Confidence                   225678999999999999999998766654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.36  E-value=5.1e-12  Score=124.72  Aligned_cols=125  Identities=20%  Similarity=0.254  Sum_probs=103.5

Q ss_pred             CCCHHHHHHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      .+.....+++..++...  ++.+|||+|||+               |..++.++..++..++|+++|+++++++.+++++
T Consensus        98 ~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGp---------------G~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~  162 (479)
T 2frx_A           98 YIQEASSMLPVAALFADGNAPQRVMDVAAAP---------------GSKTTQISARMNNEGAILANEFSASRVKVLHANI  162 (479)
T ss_dssp             EECCHHHHHHHHHHTTTTCCCSEEEESSCTT---------------SHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHhCcccCCCCEEEEeCCCC---------------CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH
Confidence            45556667777777776  788999999999               9999999999876799999999999999999999


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcc
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLI  234 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lL  234 (294)
                      ++.|+. +++++++|+.+.....     .++||+|++|++..                         ...++++.+.++|
T Consensus       163 ~r~g~~-nv~~~~~D~~~~~~~~-----~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~L  236 (479)
T 2frx_A          163 SRCGIS-NVALTHFDGRVFGAAV-----PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHAL  236 (479)
T ss_dssp             HHHTCC-SEEEECCCSTTHHHHS-----TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HHcCCC-cEEEEeCCHHHhhhhc-----cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhc
Confidence            999986 5999999998754322     47899999987521                         0246788889999


Q ss_pred             cCCeEEEEecccC
Q 022597          235 RVGGIIVIDNVLW  247 (294)
Q Consensus       235 kpgG~ivid~vl~  247 (294)
                      ||||.+++..+.+
T Consensus       237 kpGG~LvysTcs~  249 (479)
T 2frx_A          237 RPGGTLVYSTCTL  249 (479)
T ss_dssp             EEEEEEEEEESCC
T ss_pred             CCCCEEEEecccC
Confidence            9999999987744

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.35  E-value=4.7e-12  Score=119.11  Aligned_cols=120  Identities=19%  Similarity=0.217  Sum_probs=100.7

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.+..+..+..++...++.+|||+|||+               |..++.++....++.+++++|+|+++++.|+++++.
T Consensus       186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGs---------------G~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~  250 (354)
T 3tma_A          186 SLTPVLAQALLRLADARPGMRVLDPFTGS---------------GTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALA  250 (354)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCCEEESSCTT---------------SHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHhCCCCCCEEEeCCCCc---------------CHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHH
Confidence            45666777777777777788999999999               999999998763468999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----------cchHHHHHHHHhcccCCeEEEEe
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----------~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +|+. ++++.++|+.+....      .++||+|+.|++-           ..|..+++.+.+.|+|||.+++-
T Consensus       251 ~g~~-~i~~~~~D~~~~~~~------~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          251 SGLS-WIRFLRADARHLPRF------FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             TTCT-TCEEEECCGGGGGGT------CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             cCCC-ceEEEeCChhhCccc------cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9998 899999999875322      3568999998762           12678899999999999999874

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.35  E-value=1.4e-11  Score=119.35  Aligned_cols=149  Identities=17%  Similarity=0.227  Sum_probs=102.3

Q ss_pred             CCCeEEEEccc------cccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          119 GAQRCIEVGVY------TVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       119 ~~~~vLEiG~g------~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      ++.+|||||||      +               |..++.+++...++++|+++|+++++.         . ...++++++
T Consensus       216 ~~~rVLDIGCG~~~~~~T---------------GG~Sl~la~~~fP~a~V~GVDiSp~m~---------~-~~~rI~fv~  270 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEW---------------GGGSLRMWKSFFPRGQIYGLDIMDKSH---------V-DELRIRTIQ  270 (419)
T ss_dssp             SCCEEEEECCSCTTCSSC---------------CCHHHHHHHHHCTTCEEEEEESSCCGG---------G-CBTTEEEEE
T ss_pred             CCCEEEEEecCCCcCCCC---------------CHHHHHHHHHhCCCCEEEEEECCHHHh---------h-cCCCcEEEE
Confidence            67899999999      7               777888887653478999999999962         1 245899999


Q ss_pred             cchhhh--HHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEecccC------CCcccCcccCCcchH
Q 022597          193 GLAADS--LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVIDNVLW------HGKVADQMVNDAKTI  262 (294)
Q Consensus       193 gda~~~--l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~ivid~vl~------~g~v~~~~~~~~~~~  262 (294)
                      +|+.+.  ...+...  .++||+||.+...  .++...|+.+.++|||||++++.|+.+      .|...+......-..
T Consensus       271 GDa~dlpf~~~l~~~--d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~~~~~~~~tii~  348 (419)
T 3sso_A          271 GDQNDAEFLDRIARR--YGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQADPQECSGTSLG  348 (419)
T ss_dssp             CCTTCHHHHHHHHHH--HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCSSTTCCTTSHHH
T ss_pred             ecccccchhhhhhcc--cCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCccCCcchhHHHH
Confidence            999763  2222111  3789999998653  557889999999999999999999972      232211111111123


Q ss_pred             HHHHHHHHhhhC---------CCe---EEEEeecCCceEEEEEC
Q 022597          263 SIRNFNKNLMED---------ERV---SISMVPIGDGMTICQKR  294 (294)
Q Consensus       263 ~ir~f~~~l~~~---------~~~---~~~~lp~gdGl~i~~k~  294 (294)
                      .++++.+.+...         |.+   .+.-+.+-++|.+..|+
T Consensus       349 ~lk~l~D~l~~~~~~~~~~~~~~~~~~~~~~~h~y~~i~~~~kg  392 (419)
T 3sso_A          349 LLKSLIDAIQHQELPSDPNRSPGYVDRNIVGLHVYHNVAFVEKG  392 (419)
T ss_dssp             HHHHHHHHHTGGGSCCCTTCCCCHHHHHEEEEEEETTEEEEEES
T ss_pred             HHHHHHHHhcccccCCCcCCCCCccccceeEEEecCcEEEEEec
Confidence            566666655321         112   15567888999998884

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.34  E-value=3.8e-13  Score=118.57  Aligned_cols=112  Identities=13%  Similarity=0.096  Sum_probs=89.1

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      ..++..+....++.+|||+|||+               |..++.++..   +.+|+++|+++.+++.|+++++..|+.++
T Consensus        67 ~~l~~~~~~~~~~~~vLD~gcG~---------------G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~  128 (241)
T 3gdh_A           67 EHIAGRVSQSFKCDVVVDAFCGV---------------GGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADK  128 (241)
T ss_dssp             HHHHHHHHHHSCCSEEEETTCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHhhhccCCCEEEECcccc---------------CHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcC
Confidence            33344444455788999999999               9999999985   48999999999999999999999999778


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc---chHHHHHHHHhcccCCeEEEEec
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR---MYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~---~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ++++++|+.+..+       .++||+|+++++..   .....+..+.++|+|||+++++.
T Consensus       129 ~~~~~~d~~~~~~-------~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~  181 (241)
T 3gdh_A          129 IEFICGDFLLLAS-------FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL  181 (241)
T ss_dssp             EEEEESCHHHHGG-------GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred             eEEEECChHHhcc-------cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence            9999999987541       47899999987522   22224445678899999987764

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.34  E-value=3.1e-12  Score=111.95  Aligned_cols=102  Identities=17%  Similarity=0.186  Sum_probs=83.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...+++++|+++|.++++++.++++++..   .+++++.+|+.+.
T Consensus        73 ~~~~vLDlG~G~---------------G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~  134 (227)
T 1g8a_A           73 PGKSVLYLGIAS---------------GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKP  134 (227)
T ss_dssp             TTCEEEEETTTS---------------TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCG
T ss_pred             CCCEEEEEeccC---------------CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCc
Confidence            455999999999               9999999988755689999999999999999888754   5799999998763


Q ss_pred             H--HHHhhcCCCCceeEEEEcCCccchH-HHHHHHHhcccCCeEEEEe
Q 022597          199 L--KALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l--~~l~~~~~~~~fD~vfiD~~~~~~~-~~~~~~~~lLkpgG~ivid  243 (294)
                      .  ..+     .++||+|+.|....... .+++.+.+.|+|||.+++.
T Consensus       135 ~~~~~~-----~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          135 EEYRAL-----VPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             GGGTTT-----CCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhcc-----cCCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            2  111     35899999998744443 4499999999999999986

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.34  E-value=8.3e-12  Score=120.30  Aligned_cols=106  Identities=22%  Similarity=0.355  Sum_probs=88.6

Q ss_pred             HhhhC-CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILG-AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~-~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      ....+ +++|||+|||+               |..++.++..   +++|+++|+|+.+++.|+++++.+|+..  ++.++
T Consensus       209 ~~~~~~g~~VLDlg~Gt---------------G~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~  268 (393)
T 4dmg_A          209 EAMVRPGERVLDVYSYV---------------GGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHG  268 (393)
T ss_dssp             HTTCCTTCEEEEESCTT---------------THHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEES
T ss_pred             HHHhcCCCeEEEcccch---------------hHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEc
Confidence            34444 78999999999               9999999885   4569999999999999999999999975  45699


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      |+.+.++.+     .+.||+|++|++.            ..|.++++.+.++|+|||++++...
T Consensus       269 D~~~~l~~~-----~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~  327 (393)
T 4dmg_A          269 EALPTLRGL-----EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC  327 (393)
T ss_dssp             CHHHHHHTC-----CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cHHHHHHHh-----cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            998877654     3449999999873            4578899999999999999996554

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.33  E-value=2.4e-11  Score=117.62  Aligned_cols=157  Identities=18%  Similarity=0.244  Sum_probs=118.6

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +....++++..++...++.+|||+|||+               |..+..++...+ +++|+++|+++..++.+++++++.
T Consensus       230 ~qd~~s~~~~~~l~~~~g~~VLDlgaG~---------------G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~  293 (429)
T 1sqg_A          230 VQDASAQGCMTWLAPQNGEHILDLCAAP---------------GGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRL  293 (429)
T ss_dssp             ECCHHHHTHHHHHCCCTTCEEEEESCTT---------------CHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHT
T ss_pred             eeCHHHHHHHHHcCCCCcCeEEEECCCc---------------hHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHc
Confidence            4556677777888878888999999999               999999999886 489999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhcccCC
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVG  237 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLkpg  237 (294)
                      |+.  ++++.+|+.+..+.+.    .++||+|++|++..                         .+.++++.+.++|+||
T Consensus       294 g~~--~~~~~~D~~~~~~~~~----~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG  367 (429)
T 1sqg_A          294 GMK--ATVKQGDGRYPSQWCG----EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG  367 (429)
T ss_dssp             TCC--CEEEECCTTCTHHHHT----TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred             CCC--eEEEeCchhhchhhcc----cCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            984  7899999987654331    36899999987521                         1257889999999999


Q ss_pred             eEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEE-----------EEeec---CCceEEEE
Q 022597          238 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSI-----------SMVPI---GDGMTICQ  292 (294)
Q Consensus       238 G~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~-----------~~lp~---gdGl~i~~  292 (294)
                      |.+++....+...        .....+..|.   .++|+++.           .+.|-   +||+-+|+
T Consensus       368 G~lvystcs~~~~--------ene~~v~~~l---~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~  425 (429)
T 1sqg_A          368 GTLVYATCSVLPE--------ENSLQIKAFL---QRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAK  425 (429)
T ss_dssp             EEEEEEESCCCGG--------GTHHHHHHHH---HHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEE
T ss_pred             CEEEEEECCCChh--------hHHHHHHHHH---HhCCCCEEeCCCCCCCCeEEECCCCCCCCceEEEE
Confidence            9999987644321        1122344443   34555433           45674   58887775

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.33  E-value=3.8e-13  Score=122.74  Aligned_cols=96  Identities=10%  Similarity=0.119  Sum_probs=80.1

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--CC-CCcEEEEEcch
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLA  195 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--gl-~~~v~~~~gda  195 (294)
                      ++++|||||||+               |..+..+++. +  .+|+++|+|+++++.|++++...  ++ .++++++.+|+
T Consensus        72 ~~~~VL~iG~G~---------------G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~  133 (262)
T 2cmg_A           72 ELKEVLIVDGFD---------------LELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL  133 (262)
T ss_dssp             CCCEEEEESSCC---------------HHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGG
T ss_pred             CCCEEEEEeCCc---------------CHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechH
Confidence            467999999999               9999888876 4  89999999999999999887531  22 35899999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+.+         ++||+|++|...+  ..+++.+.+.|+|||++++.
T Consensus       134 ~~~~---------~~fD~Ii~d~~dp--~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          134 DLDI---------KKYDLIFCLQEPD--IHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             GSCC---------CCEEEEEESSCCC--HHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHH---------hhCCEEEECCCCh--HHHHHHHHHhcCCCcEEEEE
Confidence            7652         5799999997543  34899999999999999985

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.33  E-value=4.8e-12  Score=113.62  Aligned_cols=105  Identities=12%  Similarity=0.122  Sum_probs=88.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|+|||||+               |+.++.++...+ .++|+++|+++..++.|+++++.+|+.++|+++.+|..+.
T Consensus        15 ~g~~VlDIGtGs---------------G~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~   78 (225)
T 3kr9_A           15 QGAILLDVGSDH---------------AYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA   78 (225)
T ss_dssp             TTEEEEEETCST---------------THHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG
T ss_pred             CCCEEEEeCCCc---------------HHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh
Confidence            345999999999               999999998654 6799999999999999999999999999999999999765


Q ss_pred             HHHHhhcCCCCceeEEEEcC-CccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDA-EKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~-~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ++.      .++||.|++.. +..-..++++.+...|+++|.+|+..+
T Consensus        79 l~~------~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           79 FEE------TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             CCG------GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             ccc------CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            431      12699988643 444468889999999999999998755

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.33  E-value=5.7e-12  Score=112.25  Aligned_cols=106  Identities=16%  Similarity=0.232  Sum_probs=87.3

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      +...++.+|||||||+               |..+..++...   .+|+++|+++++++.|+++++..|+. +++++.+|
T Consensus        33 l~~~~~~~vLDiGcG~---------------G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d   93 (260)
T 1vl5_A           33 AALKGNEEVLDVATGG---------------GHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGD   93 (260)
T ss_dssp             HTCCSCCEEEEETCTT---------------CHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECC
T ss_pred             hCCCCCCEEEEEeCCC---------------CHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEec
Confidence            3445677999999999               99999888764   49999999999999999999998876 69999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.+..  +    ++++||+|+....   ..+...+++.+.+.|+|||.+++.+.
T Consensus        94 ~~~l~--~----~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~  141 (260)
T 1vl5_A           94 AEQMP--F----TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN  141 (260)
T ss_dssp             C-CCC--S----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHhCC--C----CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            87531  1    2478999998743   34567999999999999999998644

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.33  E-value=1.6e-12  Score=117.91  Aligned_cols=113  Identities=21%  Similarity=0.240  Sum_probs=89.1

Q ss_pred             HHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh-CCC
Q 022597          107 QAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVS  185 (294)
Q Consensus       107 ~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~-gl~  185 (294)
                      ..+.+...+...++.+|||+|||+               |..+..++..+.++++|+++|+++++++.|+++++.. |. 
T Consensus        98 ~~~~~~~~~~~~~~~~VLD~G~G~---------------G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-  161 (275)
T 1yb2_A           98 DASYIIMRCGLRPGMDILEVGVGS---------------GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-  161 (275)
T ss_dssp             --------CCCCTTCEEEEECCTT---------------SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-
T ss_pred             hHHHHHHHcCCCCcCEEEEecCCC---------------CHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-
Confidence            334444555566778999999999               9999999998555789999999999999999999988 74 


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ++++++.+|+.+.+       ..++||+|++|.+  ....+++.+.+.|+|||.+++..
T Consensus       162 ~~v~~~~~d~~~~~-------~~~~fD~Vi~~~~--~~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          162 GNVRTSRSDIADFI-------SDQMYDAVIADIP--DPWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             TTEEEECSCTTTCC-------CSCCEEEEEECCS--CGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             CcEEEEECchhccC-------cCCCccEEEEcCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            47999999987632       1468999999764  34688999999999999999864

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.33  E-value=5.6e-12  Score=116.43  Aligned_cols=104  Identities=17%  Similarity=0.130  Sum_probs=89.7

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++++|||+|||+               |+.++.+|...  .++|+++|+||.+++.+++|++.+|+.++++++++|+.
T Consensus       123 ~~~g~~VlD~~aG~---------------G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~  185 (278)
T 3k6r_A          123 AKPDELVVDMFAGI---------------GHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR  185 (278)
T ss_dssp             CCTTCEEEETTCTT---------------TTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTT
T ss_pred             cCCCCEEEEecCcC---------------cHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHH
Confidence            34678999999999               99999988763  47999999999999999999999999999999999998


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +..+       .+.||.|+++.+.. ..++++.+.++|++||+|.++..
T Consensus       186 ~~~~-------~~~~D~Vi~~~p~~-~~~~l~~a~~~lk~gG~ih~~~~  226 (278)
T 3k6r_A          186 DFPG-------ENIADRILMGYVVR-THEFIPKALSIAKDGAIIHYHNT  226 (278)
T ss_dssp             TCCC-------CSCEEEEEECCCSS-GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             Hhcc-------ccCCCEEEECCCCc-HHHHHHHHHHHcCCCCEEEEEee
Confidence            7642       57899999997643 34778889999999999987754

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.33  E-value=1.2e-11  Score=104.76  Aligned_cols=103  Identities=14%  Similarity=0.178  Sum_probs=85.7

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.+|||+|||+               |..+..++..   +.+++++|+++.+++.|+++++..++. +++++.+|.
T Consensus        29 ~~~~~~~vLdiG~G~---------------G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~   89 (199)
T 2xvm_A           29 KVVKPGKTLDLGCGN---------------GRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDL   89 (199)
T ss_dssp             TTSCSCEEEEETCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCG
T ss_pred             hccCCCeEEEEcCCC---------------CHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcch
Confidence            344667999999999               9999998886   579999999999999999999998885 599999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+...       .++||+|+....     ......+++.+.+.|+|||.+++-.
T Consensus        90 ~~~~~-------~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           90 NNLTF-------DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             GGCCC-------CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhCCC-------CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence            76411       478999987643     3467889999999999999976643

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.33  E-value=6.9e-12  Score=109.43  Aligned_cols=104  Identities=14%  Similarity=0.238  Sum_probs=85.1

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC----CCcEEEEE
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKH  192 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl----~~~v~~~~  192 (294)
                      ..++.+|||+|||+               |+.+..++...++.++|+++|+++++++.|+++++..|+    .++++++.
T Consensus        75 ~~~~~~vLDiG~G~---------------G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~  139 (226)
T 1i1n_A           75 LHEGAKALDVGSGS---------------GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV  139 (226)
T ss_dssp             SCTTCEEEEETCTT---------------SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred             CCCCCEEEEEcCCc---------------CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEE
Confidence            34567999999999               999999998865567999999999999999999998775    45799999


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +|+.+....      .++||+|+++.....   +++.+.+.|+|||.+++.-
T Consensus       140 ~d~~~~~~~------~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          140 GDGRMGYAE------EAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             SCGGGCCGG------GCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEEE
T ss_pred             CCcccCccc------CCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEE
Confidence            998653211      368999999876433   3467889999999999853

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.33  E-value=5.7e-12  Score=112.33  Aligned_cols=105  Identities=11%  Similarity=0.155  Sum_probs=86.1

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--------CCCCcEEE
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--------GVSHKVKI  190 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--------gl~~~v~~  190 (294)
                      ++.+|||||||+               |..++.++...+ +.+|+++|+++.+++.|+++++..        |+. ++++
T Consensus        49 ~~~~vLDiGcG~---------------G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~  111 (246)
T 2vdv_E           49 KKVTIADIGCGF---------------GGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINV  111 (246)
T ss_dssp             CCEEEEEETCTT---------------SHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEE
T ss_pred             CCCEEEEEcCCC---------------CHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEE
Confidence            345899999999               999999999876 679999999999999999999887        774 6999


Q ss_pred             EEcchhhhHHHHhhcCCCCceeEEEEcCCccc-----------hHHHHHHHHhcccCCeEEEEe
Q 022597          191 KHGLAADSLKALILNGEASSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~-----------~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.+|+.+.++...   +.+++|.|++..+...           +..+++.+.++|+|||++++.
T Consensus       112 ~~~D~~~~l~~~~---~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          112 LRGNAMKFLPNFF---EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             EECCTTSCGGGTS---CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             EeccHHHHHHHhc---cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            9999987544321   2578999987643221           368999999999999999883

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.33  E-value=4.3e-12  Score=121.37  Aligned_cols=103  Identities=12%  Similarity=0.142  Sum_probs=87.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC--cEEEEEcch
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH--KVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~--~v~~~~gda  195 (294)
                      ..+.+|||+|||+               |..++.++...| +.+|+++|+++.+++.|+++++.+|+.+  +++++.+|.
T Consensus       221 ~~~~~VLDlGcG~---------------G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~  284 (375)
T 4dcm_A          221 NLEGEIVDLGCGN---------------GVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA  284 (375)
T ss_dssp             SCCSEEEEETCTT---------------CHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECST
T ss_pred             cCCCeEEEEeCcc---------------hHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechh
Confidence            3447999999999               999999999875 7899999999999999999999999864  588899998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC--------ccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE--------KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~--------~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+.+       ..++||+|+++++        .....++++.+.+.|+|||.+++-
T Consensus       285 ~~~~-------~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          285 LSGV-------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             TTTC-------CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hccC-------CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            7632       1478999999865        223457899999999999999883

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.33  E-value=8.2e-12  Score=111.72  Aligned_cols=105  Identities=11%  Similarity=0.153  Sum_probs=84.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH------hCCCCcEEEEE
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER------AGVSHKVKIKH  192 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~------~gl~~~v~~~~  192 (294)
                      +..+|||||||+               |..++.++...+ +..++|+|+++++++.|+++++.      .++ .+++++.
T Consensus        46 ~~~~vLDiGcG~---------------G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~  108 (235)
T 3ckk_A           46 AQVEFADIGCGY---------------GGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLR  108 (235)
T ss_dssp             CCEEEEEETCTT---------------CHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEE
T ss_pred             CCCeEEEEccCC---------------cHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEE
Confidence            445899999999               999999998875 78999999999999999998875      344 4699999


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccc-----------hHHHHHHHHhcccCCeEEEEe
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~-----------~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +|+.+.++...   ..++||.|++......           +..+++.+.+.|+|||.+++.
T Consensus       109 ~d~~~~l~~~~---~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          109 SNAMKHLPNFF---YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             CCTTTCHHHHC---CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcHHHhhhhhC---CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence            99987555432   2578999988643111           357999999999999999874

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.32  E-value=2.5e-12  Score=112.44  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=85.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...+ +.+++++|+++++++.|+++++..+   +++++.+|+.+.
T Consensus        44 ~~~~vLDiG~G~---------------G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~  104 (234)
T 3dtn_A           44 ENPDILDLGAGT---------------GLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKY  104 (234)
T ss_dssp             SSCEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTC
T ss_pred             CCCeEEEecCCC---------------CHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhcc
Confidence            457999999999               999999999875 7899999999999999999887654   799999999764


Q ss_pred             HHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          199 LKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      ..       .++||+|+....     ......+++.+.+.|+|||.+++.+...
T Consensus       105 ~~-------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          105 DF-------EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             CC-------CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             CC-------CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            21       378999998753     2223468999999999999999877543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.32  E-value=1.5e-11  Score=110.80  Aligned_cols=105  Identities=11%  Similarity=0.061  Sum_probs=79.5

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |+.+..++...++.++|+++|+++.+++...+..++.   .++.++.+|+..
T Consensus        75 ~~g~~VLDlG~Gt---------------G~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~  136 (232)
T 3id6_C           75 RKGTKVLYLGAAS---------------GTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARF  136 (232)
T ss_dssp             CTTCEEEEETCTT---------------SHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTC
T ss_pred             CCCCEEEEEeecC---------------CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEccccc
Confidence            3456999999999               9999999998877899999999999876555544432   469999999875


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHH-HHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~-~~~~lLkpgG~ivid  243 (294)
                      ....   ....++||+||+|.......+.+. .+.+.|||||.+++.
T Consensus       137 ~~~~---~~~~~~~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          137 PQSY---KSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             GGGT---TTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhh---hccccceEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            3210   001468999999987655555554 445599999999986

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.32  E-value=1.2e-11  Score=120.56  Aligned_cols=125  Identities=16%  Similarity=0.232  Sum_probs=101.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +....++++..++...++.+|||+|||+               |..+..++..++..++|+++|+++..++.+++++++.
T Consensus       243 ~qd~~s~l~~~~l~~~~g~~VLDlgaG~---------------G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~  307 (450)
T 2yxl_A          243 VQEEASAVASIVLDPKPGETVVDLAAAP---------------GGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM  307 (450)
T ss_dssp             ECCHHHHHHHHHHCCCTTCEEEESSCTT---------------CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             ecCchhHHHHHhcCCCCcCEEEEeCCCc---------------cHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc
Confidence            3444566777777777888999999999               9999999998875589999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc-------------------------hHHHHHHHHhcccCC
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVG  237 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~-------------------------~~~~~~~~~~lLkpg  237 (294)
                      |+. +++++.+|+.+..+.+    ..++||+|++|++...                         ...+++.+.++|+||
T Consensus       308 g~~-~v~~~~~D~~~~~~~~----~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG  382 (450)
T 2yxl_A          308 GIK-IVKPLVKDARKAPEII----GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG  382 (450)
T ss_dssp             TCC-SEEEECSCTTCCSSSS----CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred             CCC-cEEEEEcChhhcchhh----ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            986 5999999987642211    1268999999875211                         157899999999999


Q ss_pred             eEEEEecccC
Q 022597          238 GIIVIDNVLW  247 (294)
Q Consensus       238 G~ivid~vl~  247 (294)
                      |.+++....+
T Consensus       383 G~lvy~tcs~  392 (450)
T 2yxl_A          383 GRLLYTTCSI  392 (450)
T ss_dssp             EEEEEEESCC
T ss_pred             cEEEEEeCCC
Confidence            9999877643

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.32  E-value=1.4e-11  Score=111.39  Aligned_cols=101  Identities=15%  Similarity=0.231  Sum_probs=85.8

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.+|||+|||+               |..+..++..   +.+|+++|+++.+++.|+++++..|+  +++++.+|+
T Consensus       117 ~~~~~~~vLD~GcG~---------------G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~  176 (286)
T 3m70_A          117 KIISPCKVLDLGCGQ---------------GRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDI  176 (286)
T ss_dssp             HHSCSCEEEEESCTT---------------CHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred             hccCCCcEEEECCCC---------------CHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEecc
Confidence            334778999999999               9999999886   56999999999999999999999887  799999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+...       .++||+|+....     .+....+++.+.+.|+|||++++-
T Consensus       177 ~~~~~-------~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  222 (286)
T 3m70_A          177 NAANI-------QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIV  222 (286)
T ss_dssp             GGCCC-------CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccc-------cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            76421       478999998653     456779999999999999996663

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.32  E-value=6.2e-12  Score=109.25  Aligned_cols=122  Identities=12%  Similarity=0.009  Sum_probs=87.1

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.|...+++..+ .+.++.+|||+|||+               |..+.+++..   +.+|+|+|+|+++++.|++..+.
T Consensus         6 ~~~~~l~~~~~~l-~~~~~~~vLD~GCG~---------------G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~   66 (203)
T 1pjz_A            6 EVNKDLQQYWSSL-NVVPGARVLVPLCGK---------------SQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGE   66 (203)
T ss_dssp             SSTHHHHHHHHHH-CCCTTCEEEETTTCC---------------SHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCS
T ss_pred             cCCHHHHHHHHhc-ccCCCCEEEEeCCCC---------------cHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccC
Confidence            3455544444432 233567999999999               9999999986   57999999999999999987542


Q ss_pred             hC-----------CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          182 AG-----------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       182 ~g-----------l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..           ...+++++++|+.+....-     .++||+|+....     ......+++.+.++|||||.+++-.+
T Consensus        67 ~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~-----~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~  141 (203)
T 1pjz_A           67 QPHITSQGDFKVYAAPGIEIWCGDFFALTARD-----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL  141 (203)
T ss_dssp             CSEEEEETTEEEEECSSSEEEEECCSSSTHHH-----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             CcccccccccccccCCccEEEECccccCCccc-----CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence            10           1347999999997753221     168999986432     33456789999999999998444333


Q ss_pred             cC
Q 022597          246 LW  247 (294)
Q Consensus       246 l~  247 (294)
                      .+
T Consensus       142 ~~  143 (203)
T 1pjz_A          142 EY  143 (203)
T ss_dssp             SS
T ss_pred             ec
Confidence            33

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.32  E-value=3.5e-12  Score=112.42  Aligned_cols=103  Identities=14%  Similarity=0.104  Sum_probs=83.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...+ .++|+++|+++++++.|+++.+..   .+++++.+|+.+.
T Consensus        74 ~~~~VLDlGcG~---------------G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~  134 (230)
T 1fbn_A           74 RDSKILYLGASA---------------GTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKP  134 (230)
T ss_dssp             TTCEEEEESCCS---------------SHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCG
T ss_pred             CCCEEEEEcccC---------------CHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCc
Confidence            456999999999               999999999876 689999999999999999987654   5799999998752


Q ss_pred             HHHHhhcCCCCceeEEEEcCC-ccchHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAE-KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~-~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ...+.  . .++||+|+.+.. +.....+++.+.+.|+|||.+++-
T Consensus       135 ~~~~~--~-~~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          135 QEYAN--I-VEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             GGGTT--T-SCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccc--c-CccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            11010  0 368999998754 334577899999999999999986

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.32  E-value=1.1e-11  Score=109.60  Aligned_cols=117  Identities=15%  Similarity=0.250  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597          105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV  184 (294)
Q Consensus       105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl  184 (294)
                      +.....+.......++.+|||+|||+               |..+..++...   .+++++|+++++++.|+++++..|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~vLDiGcG~---------------G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~   68 (239)
T 1xxl_A            7 HHSLGLMIKTAECRAEHRVLDIGAGA---------------GHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGV   68 (239)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTT---------------SHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             CCCcchHHHHhCcCCCCEEEEEccCc---------------CHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC
Confidence            34445555666677888999999999               99999888764   5999999999999999999999887


Q ss_pred             CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      . +++++.+|+.+. + +    ..++||+|+....   ..+...+++.+.+.|+|||.+++.+..
T Consensus        69 ~-~v~~~~~d~~~~-~-~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  126 (239)
T 1xxl_A           69 E-NVRFQQGTAESL-P-F----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  126 (239)
T ss_dssp             C-SEEEEECBTTBC-C-S----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             C-CeEEEecccccC-C-C----CCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            6 699999998653 1 1    2478999998743   345788999999999999999986554

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.32  E-value=6.8e-12  Score=110.77  Aligned_cols=115  Identities=23%  Similarity=0.393  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..|.....+...+...++.+|||+|||+               |+.+..++...+  ++|+++|+++++++.|+++++..
T Consensus        75 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~---------------G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~  137 (235)
T 1jg1_A           75 SAPHMVAIMLEIANLKPGMNILEVGTGS---------------GWNAALISEIVK--TDVYTIERIPELVEFAKRNLERA  137 (235)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTT---------------SHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHhcCCCCCCEEEEEeCCc---------------CHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc
Confidence            4566666666666667788999999999               999999999875  78999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      |+.+ +++..+|....++.      .++||+|+++.......   +.+.+.|+|||.+++.-
T Consensus       138 ~~~~-v~~~~~d~~~~~~~------~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          138 GVKN-VHVILGDGSKGFPP------KAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             TCCS-EEEEESCGGGCCGG------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             CCCC-cEEEECCcccCCCC------CCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEEE
Confidence            9875 99999997432221      24699999987644332   36788999999999854

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.32  E-value=9.7e-12  Score=115.30  Aligned_cols=107  Identities=12%  Similarity=0.193  Sum_probs=85.0

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH---hCCCCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGVSHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~---~gl~~~v~~~~gd  194 (294)
                      .++++|||||||+               |..+..+++.. +..+|+++|+|+++++.|++++..   .....+++++.+|
T Consensus        94 ~~~~~VLdiG~G~---------------G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D  157 (304)
T 3bwc_A           94 PKPERVLIIGGGD---------------GGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGD  157 (304)
T ss_dssp             SSCCEEEEEECTT---------------SHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred             CCCCeEEEEcCCC---------------CHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECc
Confidence            3567999999999               99999988753 367999999999999999998853   2234689999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccc-------hHHHHHHHHhcccCCeEEEEec
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRM-------YQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~-------~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +.+.+...    ..++||+|++|.....       ..++++.+.+.|+|||++++..
T Consensus       158 ~~~~~~~~----~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  210 (304)
T 3bwc_A          158 GLAFVRQT----PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG  210 (304)
T ss_dssp             HHHHHHSS----CTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhc----cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            98765421    1578999999875221       1689999999999999999863

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.31  E-value=5.3e-12  Score=113.22  Aligned_cols=107  Identities=22%  Similarity=0.252  Sum_probs=90.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||||||+               |..+..++...| +.+++++|+++.+++.|+++++..|+. +++++.+|+.+
T Consensus        36 ~~~~~vLDiG~G~---------------G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~   98 (276)
T 3mgg_A           36 PPGAKVLEAGCGI---------------GAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFS   98 (276)
T ss_dssp             CTTCEEEETTCTT---------------SHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGG
T ss_pred             CCCCeEEEecCCC---------------CHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEccccc
Confidence            4567999999999               999999999865 689999999999999999999998886 69999999876


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          198 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      ...      ..++||+|+....   ..+...+++.+.++|+|||++++.+..+
T Consensus        99 ~~~------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A           99 LPF------EDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             CCS------CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECG
T ss_pred             CCC------CCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            421      2578999998653   3456789999999999999999976533

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.30  E-value=8.5e-12  Score=109.85  Aligned_cols=102  Identities=17%  Similarity=0.146  Sum_probs=83.0

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...+++++|+++|+++++++.+.++.+..   .+++++.+|+.+.
T Consensus        77 ~~~~vLDlG~G~---------------G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~  138 (233)
T 2ipx_A           77 PGAKVLYLGAAS---------------GTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHP  138 (233)
T ss_dssp             TTCEEEEECCTT---------------SHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCG
T ss_pred             CCCEEEEEcccC---------------CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCCh
Confidence            456999999999               9999999998755689999999999988888887764   5799999999763


Q ss_pred             H--HHHhhcCCCCceeEEEEcCCcc-chHHHHHHHHhcccCCeEEEEe
Q 022597          199 L--KALILNGEASSYDFAFVDAEKR-MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l--~~l~~~~~~~~fD~vfiD~~~~-~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .  +..     .++||+|+.|.... ....+++.+.+.|+|||.+++.
T Consensus       139 ~~~~~~-----~~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          139 HKYRML-----IAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             GGGGGG-----CCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhccc-----CCcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            2  211     47899999987633 2355688899999999999994

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.30  E-value=5.2e-12  Score=113.92  Aligned_cols=106  Identities=13%  Similarity=0.114  Sum_probs=86.6

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.++.+|||+|||+               |+.+..++....++|+|+++|+++++++.++++.++.   .++..+.+|+.
T Consensus        75 ikpG~~VldlG~G~---------------G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~  136 (233)
T 4df3_A           75 VKEGDRILYLGIAS---------------GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDAR  136 (233)
T ss_dssp             CCTTCEEEEETCTT---------------SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTT
T ss_pred             CCCCCEEEEecCcC---------------CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEecc
Confidence            45667999999999               9999999999988999999999999999998877653   36899999886


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-ccchHHHHHHHHhcccCCeEEEEe
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +....   ....+++|+||.|.. ......++..+.+.|||||.+++.
T Consensus       137 ~p~~~---~~~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          137 FPEKY---RHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             CGGGG---TTTCCCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Ccccc---ccccceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            53211   112578999999876 344667889999999999999875

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.30  E-value=2.7e-11  Score=118.28  Aligned_cols=124  Identities=18%  Similarity=0.175  Sum_probs=95.4

Q ss_pred             CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHH-------H
Q 022597          104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVA-------K  176 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A-------~  176 (294)
                      .|.....+...+...++.+|||+|||+               |+.++.++...+ ..+|+|+|+++++++.|       +
T Consensus       227 ~p~~v~~ml~~l~l~~g~~VLDLGCGs---------------G~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar  290 (433)
T 1u2z_A          227 LPNFLSDVYQQCQLKKGDTFMDLGSGV---------------GNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELK  290 (433)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEESCTT---------------SHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEeCCCc---------------CHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHH
Confidence            355444444445566778999999999               999999999764 46899999999999999       8


Q ss_pred             HHHHHhCCC-CcEEEEEcchhhh---HHHHhhcCCCCceeEEEEcC--CccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          177 KYYERAGVS-HKVKIKHGLAADS---LKALILNGEASSYDFAFVDA--EKRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       177 ~~~~~~gl~-~~v~~~~gda~~~---l~~l~~~~~~~~fD~vfiD~--~~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      ++++..|+. ++++++++|....   ++..     .++||+|++..  ...+....++.+.+.|+|||.+++.+.+.+
T Consensus       291 ~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~-----~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p  363 (433)
T 1u2z_A          291 KRCKLYGMRLNNVEFSLKKSFVDNNRVAEL-----IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRS  363 (433)
T ss_dssp             HHHHHTTBCCCCEEEEESSCSTTCHHHHHH-----GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred             HHHHHcCCCCCceEEEEcCccccccccccc-----cCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence            899888864 6899999865421   2222     36899999863  235677888999999999999999876543

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=99.29  E-value=2.7e-11  Score=110.78  Aligned_cols=189  Identities=14%  Similarity=0.156  Sum_probs=122.2

Q ss_pred             ChhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHH--HHHhh--hCCCeEEEEccccccccccccccccC
Q 022597           69 TPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLA--MLVQI--LGAQRCIEVGVYTVCVSSYSTSILSL  143 (294)
Q Consensus        69 ~~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~--~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~  143 (294)
                      .+++.+|+..+ .++++.|+.+....         -....+.+++  .+.+.  .-+..++|+||+.             
T Consensus        23 ~~~l~~~~~~~~~~~~e~l~~~~~~~---------~~~~l~~~l~~~~l~~~i~~vpG~ivE~GV~r-------------   80 (257)
T 3tos_A           23 TQRLTKLLTNSPIPTEELVNNLPLFL---------RRHQMTDLLSMDALYRQVLDVPGVIMEFGVRF-------------   80 (257)
T ss_dssp             HHHHHHHHHTCCSCGGGGGGCGGGGC---------CHHHHHHHHHHHHHHHHTTTSCSEEEEECCTT-------------
T ss_pred             HHHHHHHHhcCCCChHHHHHhHHhhh---------hHHHHHHHHHHHHHHHHhhCCCCeEEEEeccc-------------
Confidence            35667777776 34445554332111         1122333333  22222  3356999999999             


Q ss_pred             CCcHHHHHHHHHC------CCCcEEEEEe-----CChH-------------------HHHHHHH------HHHHhCC-CC
Q 022597          144 FSGYSSLAIALVL------PESGCLVACE-----RDAR-------------------SLEVAKK------YYERAGV-SH  186 (294)
Q Consensus       144 ~aG~~sl~la~~~------~~~~~v~~id-----~~~~-------------------~~~~A~~------~~~~~gl-~~  186 (294)
                        |.+...++...      ..+.+|+++|     ..+.                   ..+..++      +.+..|. .+
T Consensus        81 --G~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~~~~g~~~~  158 (257)
T 3tos_A           81 --GRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDFFGHVTQ  158 (257)
T ss_dssp             --CHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTTSTTTTSCC
T ss_pred             --CHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhhhhcCCCCC
Confidence              99988876531      2367899999     3220                   1111222      2224565 48


Q ss_pred             cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-cchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHH
Q 022597          187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIR  265 (294)
Q Consensus       187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir  265 (294)
                      +++++.|++.+.++.+....+..+||+||+|+++ ..+..+++.+.++|+|||+|++||+.+++.      . ..+.|++
T Consensus       159 ~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~w------~-G~~~A~~  231 (257)
T 3tos_A          159 RSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPKW------P-GENIAMR  231 (257)
T ss_dssp             SEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTTC------T-HHHHHHH
T ss_pred             cEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCCC------h-HHHHHHH
Confidence            9999999999999987665556789999999986 457788999999999999999999843221      0 2234455


Q ss_pred             HHHHHhhhCCCeEEEEeecCCceEEEE
Q 022597          266 NFNKNLMEDERVSISMVPIGDGMTICQ  292 (294)
Q Consensus       266 ~f~~~l~~~~~~~~~~lp~gdGl~i~~  292 (294)
                      +|    ..+..+....+|++.+....+
T Consensus       232 ef----~~~~~~~i~~~p~~~~~~y~~  254 (257)
T 3tos_A          232 KV----LGLDHAPLRLLPGRPAPAYLR  254 (257)
T ss_dssp             HH----TCTTSSCCEECTTCSCCEEEE
T ss_pred             HH----HhhCCCeEEEccCCCCCEEEE
Confidence            44    356677788889888776543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.29  E-value=4.8e-12  Score=109.31  Aligned_cols=108  Identities=15%  Similarity=0.157  Sum_probs=85.8

Q ss_pred             HHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE
Q 022597          110 LLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK  189 (294)
Q Consensus       110 lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~  189 (294)
                      ++..+....++.+|||+|||+               |..+..++..   +.+|+++|+++++++.|++++...+   +++
T Consensus        42 ~l~~~~~~~~~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~  100 (216)
T 3ofk_A           42 LLRLSLSSGAVSNGLEIGCAA---------------GAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS---HIS  100 (216)
T ss_dssp             HHHHHTTTSSEEEEEEECCTT---------------SHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS---SEE
T ss_pred             HHHHHcccCCCCcEEEEcCCC---------------CHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC---CeE
Confidence            333344445567999999999               9999998876   3699999999999999999887643   799


Q ss_pred             EEEcchhhhHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          190 IKHGLAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ++.+|+.+..       ..++||+|+....      ......+++.+.++|+|||++++...
T Consensus       101 ~~~~d~~~~~-------~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          101 WAATDILQFS-------TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             EEECCTTTCC-------CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEcchhhCC-------CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            9999997653       1579999998643      23346789999999999999998653

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.29  E-value=4e-12  Score=112.20  Aligned_cols=115  Identities=20%  Similarity=0.217  Sum_probs=87.8

Q ss_pred             HHHHHHHHhhh----CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 022597          108 AQLLAMLVQIL----GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG  183 (294)
Q Consensus       108 ~~lL~~l~~~~----~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g  183 (294)
                      ..++..++...    ++.+|||||||+               |..+..++...  ..+|+++|+++++++.|++++...+
T Consensus        64 ~~~~~~l~~~~~~~~~~~~vLDiGcG~---------------G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~  126 (241)
T 2ex4_A           64 RKFLQRFLREGPNKTGTSCALDCGAGI---------------GRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG  126 (241)
T ss_dssp             HHHHHGGGC----CCCCSEEEEETCTT---------------THHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG
T ss_pred             HHHHHHHHHhcccCCCCCEEEEECCCC---------------CHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC
Confidence            34444444332    467999999999               99988887754  4699999999999999999988765


Q ss_pred             CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                       ..+++++.+|+.+...      ..++||+|++...     ...+..+++.+.++|+|||.+++.+..
T Consensus       127 -~~~~~~~~~d~~~~~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          127 -KRVRNYFCCGLQDFTP------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             -GGEEEEEECCGGGCCC------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -CceEEEEEcChhhcCC------CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence             3469999999865421      1458999998754     233568999999999999999985543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.29  E-value=2.7e-11  Score=116.13  Aligned_cols=104  Identities=17%  Similarity=0.202  Sum_probs=90.4

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh---------------
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---------------  182 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~---------------  182 (294)
                      .++.+|||+|||+               |..++.++...+ +.+|+++|++++.++.+++|++.+               
T Consensus        46 ~~~~~VLDl~aGt---------------G~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~  109 (378)
T 2dul_A           46 LNPKIVLDALSAT---------------GIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILK  109 (378)
T ss_dssp             HCCSEEEESSCTT---------------SHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEE
T ss_pred             cCCCEEEECCCch---------------hHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhccccccccccccccc
Confidence            4678999999999               999999999875 568999999999999999999999               


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      |+.+ ++++++|+.+.+...     .++||+|++|++ ....++++.+.+.|++||++++..
T Consensus       110 gl~~-i~v~~~Da~~~~~~~-----~~~fD~I~lDP~-~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          110 GEKT-IVINHDDANRLMAER-----HRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             SSSE-EEEEESCHHHHHHHS-----TTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCc-eEEEcCcHHHHHHhc-----cCCCCEEEeCCC-CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            8865 999999998876654     468999999984 334788999999999999988754

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.29  E-value=2.6e-11  Score=107.07  Aligned_cols=99  Identities=16%  Similarity=0.273  Sum_probs=82.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++..   +.+|+++|+++++++.|+++++..+.  +++++.+|+.+.
T Consensus        41 ~~~~vLDlGcG~---------------G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~  100 (252)
T 1wzn_A           41 EVRRVLDLACGT---------------GIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEI  100 (252)
T ss_dssp             CCCEEEEETCTT---------------CHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGC
T ss_pred             CCCEEEEeCCCC---------------CHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhc
Confidence            456999999999               9999998875   57999999999999999999998776  599999999764


Q ss_pred             HHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEec
Q 022597          199 LKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .  .     .++||+|++...      ......+++.+.+.|+|||.++++-
T Consensus       101 ~--~-----~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          101 A--F-----KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             C--C-----CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c--c-----CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            1  1     468999987422      2456788999999999999999864

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.29  E-value=1.3e-11  Score=108.24  Aligned_cols=103  Identities=14%  Similarity=0.114  Sum_probs=86.0

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++.   .+.+|+++|+++.+++.|+++++..+...+++++.+|+.+.
T Consensus        66 ~~~~vLDiGcG~---------------G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  127 (235)
T 3lcc_A           66 PLGRALVPGCGG---------------GHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW  127 (235)
T ss_dssp             CCEEEEEETCTT---------------CHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTC
T ss_pred             CCCCEEEeCCCC---------------CHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcC
Confidence            456999999999               999988865   36899999999999999999998877777899999999764


Q ss_pred             HHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .       ..++||+|+....     ......+++.+.++|+|||.+++....
T Consensus       128 ~-------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  173 (235)
T 3lcc_A          128 R-------PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP  173 (235)
T ss_dssp             C-------CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             C-------CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEec
Confidence            2       1468999987532     447789999999999999999986553

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.28  E-value=8.7e-11  Score=122.21  Aligned_cols=154  Identities=10%  Similarity=0.109  Sum_probs=111.4

Q ss_pred             HHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh------CC
Q 022597          111 LAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------GV  184 (294)
Q Consensus       111 L~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~------gl  184 (294)
                      +...+...++.+|||||||+               |..+..++...++..+|+++|+++++++.|+++++..      |+
T Consensus       713 LLelL~~~~g~rVLDVGCGT---------------G~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl  777 (950)
T 3htx_A          713 ALKHIRESSASTLVDFGCGS---------------GSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV  777 (950)
T ss_dssp             HHHHHHHSCCSEEEEETCSS---------------SHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC
T ss_pred             HHHHhcccCCCEEEEECCCC---------------CHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC
Confidence            34444555788999999999               9999999987644589999999999999999987753      44


Q ss_pred             CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc------cCCCc---
Q 022597          185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV------LWHGK---  250 (294)
Q Consensus       185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v------l~~g~---  250 (294)
                      . +++++++|+.+...      ..++||+|+....     ......+++.+.+.|+|| .+++...      ++.+.   
T Consensus       778 ~-nVefiqGDa~dLp~------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~  849 (950)
T 3htx_A          778 K-SATLYDGSILEFDS------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPE  849 (950)
T ss_dssp             S-EEEEEESCTTSCCT------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC---
T ss_pred             C-ceEEEECchHhCCc------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccc
Confidence            3 79999999976422      1578999987643     223446889999999999 6666432      22221   


Q ss_pred             -------------ccCcccC-CcchHHHHHHHHHhhhCCCeEEEEeecCCc
Q 022597          251 -------------VADQMVN-DAKTISIRNFNKNLMEDERVSISMVPIGDG  287 (294)
Q Consensus       251 -------------v~~~~~~-~~~~~~ir~f~~~l~~~~~~~~~~lp~gdG  287 (294)
                                   ...+... ......++.+.+.+.+..++.+.+.++|||
T Consensus       850 tr~~dPd~~~~~~fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          850 TQEENNSEPQLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             ---------CCSSCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             cccccccccccccccccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence                         0000000 112245677777788889999999999998

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.28  E-value=1.6e-11  Score=107.79  Aligned_cols=103  Identities=17%  Similarity=0.185  Sum_probs=79.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...+ +++|+++|+++++++.+.+..+..   .++.++.+|+.+.
T Consensus        57 ~g~~VLDlGcGt---------------G~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~  117 (210)
T 1nt2_A           57 GDERVLYLGAAS---------------GTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKP  117 (210)
T ss_dssp             SSCEEEEETCTT---------------SHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCG
T ss_pred             CCCEEEEECCcC---------------CHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCc
Confidence            445999999999               999999999887 789999999999887777666542   3688888888653


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccc-hHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~-~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ....   ...++||+|+.+..... ...+++.+.+.|||||.+++.
T Consensus       118 ~~~~---~~~~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          118 WKYS---GIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             GGTT---TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhc---ccccceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            1100   01378999999865433 344589999999999999987

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.28  E-value=1.1e-11  Score=117.89  Aligned_cols=118  Identities=22%  Similarity=0.278  Sum_probs=93.3

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh-----C-CC-CcEE
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-----G-VS-HKVK  189 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~-----g-l~-~~v~  189 (294)
                      ..++.+|||+|||+               |..+..++...+++++|+++|+++++++.|+++++..     | +. .+++
T Consensus        81 ~~~~~~VLDlGcG~---------------G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~  145 (383)
T 4fsd_A           81 SLEGATVLDLGCGT---------------GRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVR  145 (383)
T ss_dssp             GGTTCEEEEESCTT---------------SHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEE
T ss_pred             CCCCCEEEEecCcc---------------CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceE
Confidence            44677999999999               9999999998765789999999999999999998876     4 32 5799


Q ss_pred             EEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          190 IKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       190 ~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      ++.+|+.+...........++||+|+....   ..+...+++.+.++|+|||++++.++....
T Consensus       146 ~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~  208 (383)
T 4fsd_A          146 FLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADR  208 (383)
T ss_dssp             EEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred             EEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecccc
Confidence            999999764210000112578999998754   345789999999999999999998775543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.28  E-value=1.3e-11  Score=110.33  Aligned_cols=115  Identities=13%  Similarity=0.131  Sum_probs=89.0

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChH------HHHHHHHHHHHhCCCCcE
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDAR------SLEVAKKYYERAGVSHKV  188 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~------~~~~A~~~~~~~gl~~~v  188 (294)
                      +...++.+|||||||+               |..+..++...++.++|+++|++++      +++.|+++++..++.+++
T Consensus        39 ~~~~~~~~vLDiGcG~---------------G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v  103 (275)
T 3bkx_A           39 WQVKPGEKILEIGCGQ---------------GDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRL  103 (275)
T ss_dssp             HTCCTTCEEEEESCTT---------------SHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGE
T ss_pred             cCCCCCCEEEEeCCCC---------------CHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCce
Confidence            3445678999999999               9999999998654689999999997      999999999999887889


Q ss_pred             EEEEcc-hhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          189 KIKHGL-AADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       189 ~~~~gd-a~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      +++.+| .......+    ..++||+|+....   ..+...+++.+..+++|||.+++.+....
T Consensus       104 ~~~~~d~~~~~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~  163 (275)
T 3bkx_A          104 TVHFNTNLSDDLGPI----ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQ  163 (275)
T ss_dssp             EEECSCCTTTCCGGG----TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred             EEEECChhhhccCCC----CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence            999998 32110011    1478999998653   23345577777788888999999876543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.28  E-value=1e-11  Score=109.81  Aligned_cols=105  Identities=9%  Similarity=0.112  Sum_probs=87.1

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++.+|||+|||+               |..+..++...  +.+|+++|+++++++.|+++.+..   .+++++.+|+.
T Consensus        53 ~~~~~~vLdiG~G~---------------G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~  112 (266)
T 3ujc_A           53 LNENSKVLDIGSGL---------------GGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDIL  112 (266)
T ss_dssp             CCTTCEEEEETCTT---------------SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTT
T ss_pred             CCCCCEEEEECCCC---------------CHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccc
Confidence            34567999999999               99999999976  579999999999999999877654   57999999997


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      +..      .+.++||+|+....     ..+...+++.+.+.|+|||.+++.+...
T Consensus       113 ~~~------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  162 (266)
T 3ujc_A          113 TKE------FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCA  162 (266)
T ss_dssp             TCC------CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cCC------CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            641      12579999998643     2667899999999999999999987643

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.27  E-value=8.9e-12  Score=108.58  Aligned_cols=107  Identities=10%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcE
Q 022597          109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV  188 (294)
Q Consensus       109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v  188 (294)
                      .++..+....++.+|||||||+               |..+..++...   .+|+++|+++++++.|++.+..     ++
T Consensus        32 ~~~~~l~~~~~~~~vLDiGcG~---------------G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v   88 (250)
T 2p7i_A           32 FMVRAFTPFFRPGNLLELGSFK---------------GDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GI   88 (250)
T ss_dssp             HHHHHHGGGCCSSCEEEESCTT---------------SHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CE
T ss_pred             HHHHHHHhhcCCCcEEEECCCC---------------CHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----Ce
Confidence            3444444456778999999999               99998888753   4899999999999999987643     69


Q ss_pred             EEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHH-hcccCCeEEEEecc
Q 022597          189 KIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLL-QLIRVGGIIVIDNV  245 (294)
Q Consensus       189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~-~lLkpgG~ivid~v  245 (294)
                      +++.+|+.+..       ..++||+|++...   ..+...+++.+. +.|+|||.+++...
T Consensus        89 ~~~~~d~~~~~-------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A           89 TYIHSRFEDAQ-------LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             EEEESCGGGCC-------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             EEEEccHHHcC-------cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            99999997651       1578999998643   235688999999 99999999999664

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.27  E-value=1.6e-11  Score=111.05  Aligned_cols=121  Identities=13%  Similarity=0.018  Sum_probs=89.6

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      ...|...+++..+....++.+|||+|||+               |..+.+++..   +.+|+|||+|+.+++.|++....
T Consensus        51 ~~~~~l~~~~~~~~~~~~~~~vLD~GCG~---------------G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~  112 (252)
T 2gb4_A           51 QGHQLLKKHLDTFLKGQSGLRVFFPLCGK---------------AIEMKWFADR---GHTVVGVEISEIGIREFFAEQNL  112 (252)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCEEEETTCTT---------------CTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHhccCCCCCeEEEeCCCC---------------cHHHHHHHHC---CCeEEEEECCHHHHHHHHHhccc
Confidence            45666555555544334678999999999               9999999985   57999999999999999765431


Q ss_pred             ----------hC------CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEE
Q 022597          182 ----------AG------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGII  240 (294)
Q Consensus       182 ----------~g------l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~i  240 (294)
                                .+      ...+++++++|+.+....     ..++||+|+...     +......+++.+.++|+|||.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~-----~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l  187 (252)
T 2gb4_A          113 SYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRA-----NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQY  187 (252)
T ss_dssp             CEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGG-----CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             ccccccccccccccccccCCCceEEEECccccCCcc-----cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEE
Confidence                      00      135799999999875321     127899998542     2445678999999999999999


Q ss_pred             EEecc
Q 022597          241 VIDNV  245 (294)
Q Consensus       241 vid~v  245 (294)
                      ++-.+
T Consensus       188 ~l~~~  192 (252)
T 2gb4_A          188 LVAVL  192 (252)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            65433

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.27  E-value=9.7e-12  Score=119.98  Aligned_cols=105  Identities=13%  Similarity=0.172  Sum_probs=90.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc-EEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~-v~~~~gda~~  197 (294)
                      ++.+|||++||+               |..++.++...+...+|+++|++++.++.+++|++.+|+.++ ++++.+|+.+
T Consensus        52 ~g~~VLDlfaGt---------------G~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~  116 (392)
T 3axs_A           52 RPVKVADPLSAS---------------GIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANF  116 (392)
T ss_dssp             SCEEEEESSCTT---------------SHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH
T ss_pred             CCCEEEECCCcc---------------cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHH
Confidence            456999999999               999999998765337899999999999999999999999887 9999999988


Q ss_pred             hHH-HHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          198 SLK-ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       198 ~l~-~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .++ .+     .++||+||+|+ .....++++.+.++|++||++++.-
T Consensus       117 ~l~~~~-----~~~fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          117 FLRKEW-----GFGFDYVDLDP-FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             HHHSCC-----SSCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHhh-----CCCCcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            776 54     46899999998 3334678999999999999988743

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.27  E-value=2.3e-11  Score=116.71  Aligned_cols=115  Identities=20%  Similarity=0.312  Sum_probs=94.6

Q ss_pred             CCHHHHHHHHHHHhhh-----CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQIL-----GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK  177 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~-----~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~  177 (294)
                      ..+....++..+....     ++.+|||+|||+               |..++.++..   +.+|+++|+|+.+++.|++
T Consensus       212 ~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~---------------G~~~~~la~~---g~~V~gvDis~~al~~A~~  273 (381)
T 3dmg_A          212 VDPASLLLLEALQERLGPEGVRGRQVLDLGAGY---------------GALTLPLARM---GAEVVGVEDDLASVLSLQK  273 (381)
T ss_dssp             CCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTT---------------STTHHHHHHT---TCEEEEEESBHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeC---------------CHHHHHHHHc---CCEEEEEECCHHHHHHHHH
Confidence            4566666676666544     567999999999               9999999986   5799999999999999999


Q ss_pred             HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--------ccchHHHHHHHHhcccCCeEEEEe
Q 022597          178 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--------KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       178 ~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--------~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +++.+++.  ++++.+|+.+....      .++||+|+++++        ......+++.+.+.|+|||.+++-
T Consensus       274 n~~~~~~~--v~~~~~D~~~~~~~------~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          274 GLEANALK--AQALHSDVDEALTE------EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             HHHHTTCC--CEEEECSTTTTSCT------TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHcCCC--eEEEEcchhhcccc------CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            99998875  89999999765321      379999999854        234678999999999999999884

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.27  E-value=1.9e-11  Score=110.16  Aligned_cols=105  Identities=13%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|+|||||+               |+.++.++...+ ..+|+++|+++..++.|+++++.+|+.++++++++|..+.
T Consensus        21 ~g~~VlDIGtGs---------------G~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~   84 (230)
T 3lec_A           21 KGARLLDVGSDH---------------AYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSA   84 (230)
T ss_dssp             TTEEEEEETCST---------------THHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG
T ss_pred             CCCEEEEECCch---------------HHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc
Confidence            445999999999               999999998643 6789999999999999999999999999999999999876


Q ss_pred             HHHHhhcCCCCceeEEEEc-CCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVD-AEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD-~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +..      .++||.|++. .+..-..++++...+.|+++|.+|+..+
T Consensus        85 ~~~------~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           85 FEE------ADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             CCG------GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ccc------ccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECC
Confidence            431      2379998764 3445578888888899999999998765

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.26  E-value=7.1e-11  Score=106.74  Aligned_cols=119  Identities=18%  Similarity=0.182  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597          105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV  184 (294)
Q Consensus       105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl  184 (294)
                      ....+.+..++...++.+|||||||+               |..+..++..   +.+|+++|+++++++.|+++....+.
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~  104 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGT---------------GVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRK  104 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCC---------------CHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhccc
Confidence            34445666666667788999999999               9999999886   45999999999999999998765443


Q ss_pred             C---CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-C---c-------cchHHHHHHHHhcccCCeEEEEec
Q 022597          185 S---HKVKIKHGLAADSLKALILNGEASSYDFAFVDA-E---K-------RMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       185 ~---~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-~---~-------~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .   .++.+..+|+.+....+   ...++||+|++.. .   .       .....+++.+.+.|+|||++++..
T Consensus       105 ~~~~~~~~~~~~d~~~~~~~~---~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          105 EPAFDKWVIEEANWLTLDKDV---PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             SHHHHTCEEEECCGGGHHHHS---CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccceeeEeecChhhCcccc---ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            3   46889999987754332   1257999999852 1   2       237889999999999999999864

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.26  E-value=1.9e-11  Score=106.75  Aligned_cols=112  Identities=18%  Similarity=0.236  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ..|.....+...+...++.+|||+|||+               |..+..++...   .+|+++|+++++++.|+++++..
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~---------------G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~  115 (231)
T 1vbf_A           54 TALNLGIFMLDELDLHKGQKVLEIGTGI---------------GYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYY  115 (231)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCC---------------CHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhc
Confidence            3444444444444555677999999999               99999999874   79999999999999999999876


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +   +++++.+|+.+.++.      .++||+|+++.......   +.+.+.|+|||.+++..
T Consensus       116 ~---~v~~~~~d~~~~~~~------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          116 N---NIKLILGDGTLGYEE------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             S---SEEEEESCGGGCCGG------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             C---CeEEEECCccccccc------CCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEE
Confidence            6   799999998763221      47899999987544332   46788999999999864

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.26  E-value=3.9e-11  Score=113.29  Aligned_cols=110  Identities=14%  Similarity=0.138  Sum_probs=91.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||||||+               |..+..+++..| +.+++++|+ +++++.|+++++..|+.++++++.+|+.+
T Consensus       178 ~~~~~vlDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  240 (363)
T 3dp7_A          178 HHPKRLLDIGGNT---------------GKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLD  240 (363)
T ss_dssp             GCCSEEEEESCTT---------------CHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCS
T ss_pred             cCCCEEEEeCCCc---------------CHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccc
Confidence            5778999999999               999999999986 679999999 99999999999999988899999999875


Q ss_pred             hHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          198 SLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      .-..+     .++||+|++..     +.+....+++.+.+.|+|||.+++.+..+..
T Consensus       241 ~~~~~-----p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (363)
T 3dp7_A          241 RDVPF-----PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR  292 (363)
T ss_dssp             SSCCC-----CCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred             cCCCC-----CCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence            30001     36899998742     2344568899999999999999887766554

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.26  E-value=2.3e-11  Score=104.41  Aligned_cols=109  Identities=17%  Similarity=0.211  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      ..++..+....++.+|||+|||+               |..+..++..   +.+++++|+++++++.|++    .+. .+
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~---------------G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~-~~   91 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGT---------------GYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGL-DN   91 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTT---------------SHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCC-TT
T ss_pred             HHHHHHHhcCCCCCeEEEECCCC---------------CHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCC-CC
Confidence            44555555566678999999999               9999999987   5799999999999999988    454 46


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ++++.+|+.+..       ..++||+|+....     .+....+++.+.+.|+|||.+++.+..
T Consensus        92 ~~~~~~d~~~~~-------~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A           92 VEFRQQDLFDWT-------PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             EEEEECCTTSCC-------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEecccccCC-------CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            999999997651       2589999998653     222578999999999999999987653

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.26  E-value=2.8e-11  Score=103.46  Aligned_cols=102  Identities=16%  Similarity=0.191  Sum_probs=84.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++..   +.+++++|+++++++.|+++++..+.  ++++..+|+.+.
T Consensus        29 ~~~~vLdiGcG~---------------G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~   88 (202)
T 2kw5_A           29 PQGKILCLAEGE---------------GRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADF   88 (202)
T ss_dssp             CSSEEEECCCSC---------------THHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTB
T ss_pred             CCCCEEEECCCC---------------CHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhc
Confidence            333999999999               9999888875   57999999999999999999998876  699999998764


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .  +    ..++||+|+....   ......+++.+.++|+|||.+++....
T Consensus        89 ~--~----~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A           89 D--I----VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             S--C----CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             C--C----CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            1  1    2478999987532   345788999999999999999997654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.25  E-value=9.2e-12  Score=109.22  Aligned_cols=104  Identities=17%  Similarity=0.221  Sum_probs=83.5

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-----CcEEEEEeCChHHHHHHHHHHHHhCC----CCc
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-----SGCLVACERDARSLEVAKKYYERAGV----SHK  187 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-----~~~v~~id~~~~~~~~A~~~~~~~gl----~~~  187 (294)
                      ..++.+|||+|||+               |+.+..++...+.     .++|+++|+++++++.|+++++..+.    .++
T Consensus        82 ~~~~~~VLdiG~G~---------------G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  146 (227)
T 1r18_A           82 LKPGARILDVGSGS---------------GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  146 (227)
T ss_dssp             CCTTCEEEEESCTT---------------SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCc---------------cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence            44567999999999               9999999986542     36999999999999999999988762    346


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ++++.+|..+.++.      .++||+|+++.....   +.+.+.+.|+|||.+++.-
T Consensus       147 v~~~~~d~~~~~~~------~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          147 LLIVEGDGRKGYPP------NAPYNAIHVGAAAPD---TPTELINQLASGGRLIVPV  194 (227)
T ss_dssp             EEEEESCGGGCCGG------GCSEEEEEECSCBSS---CCHHHHHTEEEEEEEEEEE
T ss_pred             eEEEECCcccCCCc------CCCccEEEECCchHH---HHHHHHHHhcCCCEEEEEE
Confidence            99999998763221      368999999876543   3367889999999999863

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.25  E-value=1.5e-11  Score=115.92  Aligned_cols=107  Identities=17%  Similarity=0.180  Sum_probs=89.3

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ....++++|||+|||+               |..++.+++. + ..+|+++|++ ++++.|+++++.+|+.++++++.+|
T Consensus        62 ~~~~~~~~VLDvGcG~---------------G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d  123 (349)
T 3q7e_A           62 RHLFKDKVVLDVGSGT---------------GILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGK  123 (349)
T ss_dssp             HHHHTTCEEEEESCTT---------------SHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             cccCCCCEEEEEeccc---------------hHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECc
Confidence            3456788999999999               9999999986 2 5699999999 4999999999999999999999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcC------CccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDA------EKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~------~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.+..  +    +.++||+|+.+.      .......+++.+.++|+|||+++.+..
T Consensus       124 ~~~~~--~----~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  174 (349)
T 3q7e_A          124 VEEVE--L----PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA  174 (349)
T ss_dssp             TTTCC--C----SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             HHHcc--C----CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccc
Confidence            98751  1    147999999864      235677888999999999999986544

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.25  E-value=2.2e-11  Score=110.57  Aligned_cols=105  Identities=10%  Similarity=0.139  Sum_probs=88.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|+|||||+               |+.++.++...+ ..+|+++|+++..++.|+++++.+|+.++|+++++|..+.
T Consensus        21 ~g~~VlDIGtGs---------------G~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~   84 (244)
T 3gnl_A           21 KNERIADIGSDH---------------AYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAV   84 (244)
T ss_dssp             SSEEEEEETCST---------------THHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG
T ss_pred             CCCEEEEECCcc---------------HHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhc
Confidence            446999999999               999999998643 6789999999999999999999999999999999999876


Q ss_pred             HHHHhhcCCCCceeEEEE-cCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFV-DAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfi-D~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +..      .++||.|++ ..+..-..++++.....|+++|.+|+..+
T Consensus        85 ~~~------~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           85 IEK------KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             CCG------GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             cCc------cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            421      135999875 34455678889999999999999998765

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.25  E-value=2.8e-11  Score=105.61  Aligned_cols=109  Identities=12%  Similarity=0.167  Sum_probs=87.1

Q ss_pred             HHHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          108 AQLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       108 ~~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      .+.+..++...  ++.+|||+|||+               |..+..++..   +.+++++|+++++++.|++++...+. 
T Consensus        24 ~~~~~~~l~~~~~~~~~vLdiG~G~---------------G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~-   84 (246)
T 1y8c_A           24 SDFIIEKCVENNLVFDDYLDLACGT---------------GNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-   84 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTT---------------STTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHhCCCCCeEEEeCCCC---------------CHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC-
Confidence            33344444333  567999999999               9999888876   46899999999999999999998776 


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-C------ccchHHHHHHHHhcccCCeEEEEe
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDA-E------KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-~------~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                       +++++.+|+.+..  +     .++||+|+... .      ......+++.+.+.|+|||.++++
T Consensus        85 -~~~~~~~d~~~~~--~-----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           85 -KPRLACQDISNLN--I-----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -CCEEECCCGGGCC--C-----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -CeEEEecccccCC--c-----cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence             6899999987641  1     37899999865 2      245788999999999999999985

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.25  E-value=1.5e-11  Score=105.28  Aligned_cols=116  Identities=15%  Similarity=0.169  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          106 DQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       106 ~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      ...+++..+....++.+|||+|||+               |..++.++...  +.+++++|+++++++.|+++++..+  
T Consensus        10 ~~~~~~~~~~~~~~~~~vLDiGcG~---------------G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--   70 (209)
T 2p8j_A           10 QLYRFLKYCNESNLDKTVLDCGAGG---------------DLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENN--   70 (209)
T ss_dssp             HHHHHHHHHHHSSSCSEEEEESCCS---------------SSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHT--
T ss_pred             hHHHHHHHHhccCCCCEEEEECCCC---------------CHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC--
Confidence            3455666666666678999999999               88755555442  5799999999999999999998877  


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+++++.+|+.+..  +    +.++||+|+....     ..+...+++.+.+.|+|||.+++....
T Consensus        71 ~~~~~~~~d~~~~~--~----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           71 FKLNISKGDIRKLP--F----KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             CCCCEEECCTTSCC--S----CTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CceEEEECchhhCC--C----CCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            36889999987531  1    2478999997532     256788999999999999999997653

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.25  E-value=6.4e-12  Score=111.91  Aligned_cols=121  Identities=17%  Similarity=0.157  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHhhh-----CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          105 PDQAQLLAMLVQIL-----GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       105 ~~~~~lL~~l~~~~-----~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      ++...++..++...     ++.+|||+|||+               |..++.++...+ +++|+++|+++++++.|++++
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~---------------G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~  109 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGA---------------SCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNV  109 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTT---------------TTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCCh---------------hHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHH
Confidence            55666666666543     356999999999               999999888764 589999999999999999999


Q ss_pred             HHhCCCCcEEEEEcchhhh-HHHHhhcCCCCceeEEEEcCCccc------------------hHHHHHHHHhcccCCeEE
Q 022597          180 ERAGVSHKVKIKHGLAADS-LKALILNGEASSYDFAFVDAEKRM------------------YQEYFELLLQLIRVGGII  240 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~-l~~l~~~~~~~~fD~vfiD~~~~~------------------~~~~~~~~~~lLkpgG~i  240 (294)
                      +.+|+.++++++++|+.+. ...+.. ...++||+|+.+++-..                  ...++..+.++|+|||.+
T Consensus       110 ~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l  188 (254)
T 2h00_A          110 EQNNLSDLIKVVKVPQKTLLMDALKE-ESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGEL  188 (254)
T ss_dssp             HHTTCTTTEEEEECCTTCSSTTTSTT-CCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHH
T ss_pred             HHcCCCccEEEEEcchhhhhhhhhhc-ccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEE
Confidence            9999988899999997652 222210 00158999999854110                  112344556677777765


Q ss_pred             EE
Q 022597          241 VI  242 (294)
Q Consensus       241 vi  242 (294)
                      .+
T Consensus       189 ~~  190 (254)
T 2h00_A          189 EF  190 (254)
T ss_dssp             HH
T ss_pred             EE
Confidence            44

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.24  E-value=2.4e-10  Score=105.30  Aligned_cols=107  Identities=16%  Similarity=0.269  Sum_probs=89.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..++...| +.+++++|++ ++++.|+++++..|+.++++++.+|..+
T Consensus       164 ~~~~~vlDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~  226 (335)
T 2r3s_A          164 IEPLKVLDISASH---------------GLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFE  226 (335)
T ss_dssp             CCCSEEEEETCTT---------------CHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred             CCCCEEEEECCCc---------------CHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccccc
Confidence            5668999999999               999999999886 6799999999 9999999999999998899999999875


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      .  .+     .+.||+|++...     .+....+++.+.+.|+|||.+++.+...+
T Consensus       227 ~--~~-----~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          227 V--DY-----GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             S--CC-----CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             C--CC-----CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            3  11     345999998432     34567899999999999998877665443

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.24  E-value=2.1e-11  Score=116.26  Aligned_cols=104  Identities=13%  Similarity=0.179  Sum_probs=87.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++|||+|||+               |..++.+++..  ..+|+++|++ ++++.|+++++.+|+.++++++++|+.+
T Consensus        62 ~~~~~VLDlGcGt---------------G~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~  123 (376)
T 3r0q_C           62 FEGKTVLDVGTGS---------------GILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVED  123 (376)
T ss_dssp             TTTCEEEEESCTT---------------THHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred             CCCCEEEEeccCc---------------CHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhh
Confidence            4567999999999               99999998862  3599999999 9999999999999999999999999976


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ...       .++||+|+.+.-      ......+++.+.++|+|||+++++...
T Consensus       124 ~~~-------~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          124 ISL-------PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             CCC-------SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             cCc-------CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            521       378999998641      244677889999999999999987654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.24  E-value=8.5e-12  Score=111.17  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=83.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHh---CCCCc-------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERA---GVSHK-------  187 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~---gl~~~-------  187 (294)
                      ++.+|||+|||+               |..++.++..+ .++.+|+++|+|+++++.|++++...   ++.++       
T Consensus        51 ~~~~vLD~gcGs---------------G~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~  115 (250)
T 1o9g_A           51 GPVTLWDPCCGS---------------GYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ  115 (250)
T ss_dssp             SCEEEEETTCTT---------------SHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             CCCeEEECCCCC---------------CHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhh
Confidence            346999999999               99999999873 12579999999999999999998876   55433       


Q ss_pred             ------------------EE-------------EEEcchhhhHHHHhhcCCCCceeEEEEcCCc------------cchH
Q 022597          188 ------------------VK-------------IKHGLAADSLKALILNGEASSYDFAFVDAEK------------RMYQ  224 (294)
Q Consensus       188 ------------------v~-------------~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~  224 (294)
                                        ++             +.++|..+..+..... ...+||+|+.+++.            ..+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~  194 (250)
T 1o9g_A          116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVL-AGSAPDVVLTDLPYGERTHWEGQVPGQPVA  194 (250)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH-TTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred             hhhcccccchhhhhhhhhhhhhccccccccccceeeccccccccccccc-CCCCceEEEeCCCeeccccccccccccHHH
Confidence                              67             9999987643210000 03589999997541            3356


Q ss_pred             HHHHHHHhcccCCeEEEEe
Q 022597          225 EYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       225 ~~~~~~~~lLkpgG~ivid  243 (294)
                      .+++.+.+.|+|||++++.
T Consensus       195 ~~l~~~~~~LkpgG~l~~~  213 (250)
T 1o9g_A          195 GLLRSLASALPAHAVIAVT  213 (250)
T ss_dssp             HHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHhcCCCcEEEEe
Confidence            8999999999999999984

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.24  E-value=2.3e-11  Score=114.37  Aligned_cols=105  Identities=15%  Similarity=0.165  Sum_probs=86.3

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ....++++|||||||+               |..++.+++. + ..+|+++|+++ +++.|+++++.+|+.++++++.+|
T Consensus        60 ~~~~~~~~VLDiGcGt---------------G~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d  121 (340)
T 2fyt_A           60 PHIFKDKVVLDVGCGT---------------GILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGK  121 (340)
T ss_dssp             GGGTTTCEEEEETCTT---------------SHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             hhhcCCCEEEEeeccC---------------cHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEee
Confidence            3445678999999999               9999998886 2 46999999997 999999999999998899999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcC---C---ccchHHHHHHHHhcccCCeEEEEe
Q 022597          195 AADSLKALILNGEASSYDFAFVDA---E---KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~---~---~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.+..  +    +.++||+|+.+.   .   ......+++.+.++|+|||.++.+
T Consensus       122 ~~~~~--~----~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~  170 (340)
T 2fyt_A          122 IEEVH--L----PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD  170 (340)
T ss_dssp             TTTSC--C----SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             HHHhc--C----CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEcc
Confidence            97641  1    147899999765   1   234677888889999999999843

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.23  E-value=5.3e-11  Score=102.95  Aligned_cols=102  Identities=12%  Similarity=0.138  Sum_probs=83.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...   .+++++|+++++++.|+++++..+  .+++++.+|+.+.
T Consensus        38 ~~~~vLDlG~G~---------------G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~   97 (227)
T 1ve3_A           38 KRGKVLDLACGV---------------GGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKL   97 (227)
T ss_dssp             SCCEEEEETCTT---------------SHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSC
T ss_pred             CCCeEEEEeccC---------------CHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcC
Confidence            356999999999               99998888864   399999999999999999998877  5799999998763


Q ss_pred             HHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .  +    ..++||+|+....     ..+...+++.+.+.|+|||.+++....
T Consensus        98 ~--~----~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A           98 S--F----EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             C--S----CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             C--C----CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            1  1    1468999998654     234678899999999999999886543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.23  E-value=4.2e-11  Score=112.45  Aligned_cols=100  Identities=14%  Similarity=0.135  Sum_probs=86.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..++. +.  + +.+|+++|+|+++++.|+++++.+|+.++++++++|+.+
T Consensus       194 ~~~~~VLDlg~G~---------------G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~  254 (336)
T 2yx1_A          194 SLNDVVVDMFAGV---------------GPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVRE  254 (336)
T ss_dssp             CTTCEEEETTCTT---------------SHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred             CCCCEEEEccCcc---------------CHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHH
Confidence            4778999999999               999988 66  2 689999999999999999999999998789999999987


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+         ++||+|++|++. ...++++.+.++|+|||++++....
T Consensus       255 ~~---------~~fD~Vi~dpP~-~~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          255 VD---------VKGNRVIMNLPK-FAHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             CC---------CCEEEEEECCTT-TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             hc---------CCCcEEEECCcH-hHHHHHHHHHHHcCCCCEEEEEEee
Confidence            63         689999999753 2347888999999999999987663

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.23  E-value=1.2e-10  Score=108.49  Aligned_cols=110  Identities=14%  Similarity=0.113  Sum_probs=91.8

Q ss_pred             hC-CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LG-AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~-~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      .+ +.+|||||||+               |..+..+++..| +.+++++|+ +++++.|+++++..++.++++++.+|..
T Consensus       177 ~~~~~~vlDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~  239 (352)
T 3mcz_A          177 FARARTVIDLAGGH---------------GTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLL  239 (352)
T ss_dssp             GTTCCEEEEETCTT---------------CHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTT
T ss_pred             cCCCCEEEEeCCCc---------------CHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcc
Confidence            44 78999999999               999999999887 689999999 8899999999999999889999999987


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      +.....     .++||+|++...     .+....+++.+.+.|+|||.+++.+..++.
T Consensus       240 ~~~~~~-----~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (352)
T 3mcz_A          240 DARNFE-----GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND  292 (352)
T ss_dssp             CGGGGT-----TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred             cCcccC-----CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            642111     467999987532     334578999999999999999987766544

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.23  E-value=3.9e-11  Score=112.15  Aligned_cols=106  Identities=21%  Similarity=0.244  Sum_probs=86.8

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      .....++++|||||||+               |..++.+++. + ..+|+++|++ ++++.|+++++.+|+.++++++.+
T Consensus        33 ~~~~~~~~~VLDiGcGt---------------G~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~   94 (328)
T 1g6q_1           33 NKDLFKDKIVLDVGCGT---------------GILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRG   94 (328)
T ss_dssp             HHHHHTTCEEEEETCTT---------------SHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEES
T ss_pred             hHhhcCCCEEEEecCcc---------------HHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEEC
Confidence            34456778999999999               9999988875 2 4699999999 599999999999999999999999


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEe
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |+.+..  +    +.++||+|+.+..      ......++..+.++|+|||.++.+
T Consensus        95 d~~~~~--~----~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~  144 (328)
T 1g6q_1           95 KLEDVH--L----PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             CTTTSC--C----SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             chhhcc--C----CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence            997641  1    1378999998732      344678888889999999999854

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.23  E-value=9.5e-11  Score=113.99  Aligned_cols=124  Identities=12%  Similarity=0.066  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH-----
Q 022597          105 PDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----  179 (294)
Q Consensus       105 ~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~-----  179 (294)
                      +....-+...+.+.++.+|||||||+               |..++.++...+ ..+++|||+++++++.|+++.     
T Consensus       159 ~~~i~~il~~l~l~~gd~VLDLGCGt---------------G~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frk  222 (438)
T 3uwp_A          159 FDLVAQMIDEIKMTDDDLFVDLGSGV---------------GQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRK  222 (438)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTT---------------SHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCC---------------CHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            33333333444566778999999999               999999998764 447999999999999998865     


Q ss_pred             --HHhCCC-CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          180 --ERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       180 --~~~gl~-~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                        +..|+. .++++++||+.+......    .+.||+||++..  ..+....+..+.+.|||||.||+.+.+-.
T Consensus       223 r~~~~Gl~~~rVefi~GD~~~lp~~d~----~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          223 WMKWYGKKHAEYTLERGDFLSEEWRER----IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             HHHHHTBCCCEEEEEECCTTSHHHHHH----HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             HHHHhCCCCCCeEEEECcccCCccccc----cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence              345763 689999999987532110    147999998754  44566777888899999999999766543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.22  E-value=3.5e-11  Score=113.32  Aligned_cols=103  Identities=13%  Similarity=0.150  Sum_probs=85.6

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++|||||||+               |..++.+++.  ...+|+++|+++ +++.|+++++.+|+.++++++.+|+
T Consensus        47 ~~~~~~~VLDiGcGt---------------G~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~  108 (348)
T 2y1w_A           47 TDFKDKIVLDVGCGS---------------GILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV  108 (348)
T ss_dssp             GGTTTCEEEEETCTT---------------SHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCT
T ss_pred             ccCCcCEEEEcCCCc---------------cHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcch
Confidence            445778999999999               9999988875  246999999996 8899999999999988999999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+..  +     .++||+|+....     .+.+.+.+..+.++|+|||.+++.
T Consensus       109 ~~~~--~-----~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          109 EEVS--L-----PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             TTCC--C-----SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             hhCC--C-----CCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            7641  1     368999998743     345677888889999999999854

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.22  E-value=2.8e-10  Score=100.16  Aligned_cols=158  Identities=9%  Similarity=0.017  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHhh-hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 022597          105 PDQAQLLAMLVQI-LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG  183 (294)
Q Consensus       105 ~~~~~lL~~l~~~-~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g  183 (294)
                      |..-.+....... .++.+|||+|||+               |..++.++...| +.+++++|+|+++++.+++++..+|
T Consensus        34 p~ld~fY~~~~~~l~~~~~VLDlGCG~---------------GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g   97 (200)
T 3fzg_A           34 ATLNDFYTYVFGNIKHVSSILDFGCGF---------------NPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLK   97 (200)
T ss_dssp             GGHHHHHHHHHHHSCCCSEEEEETCTT---------------HHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSC
T ss_pred             HhHHHHHHHHHhhcCCCCeEEEecCCC---------------CHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcC
Confidence            4444444443333 3467999999999               988888887665 6699999999999999999999999


Q ss_pred             CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcc--cCC
Q 022597          184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM--VND  258 (294)
Q Consensus       184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~--~~~  258 (294)
                      ..+++++  .|..+..+       .++||+|+.---   -++.+..+..+.+.|+|||++|--.+   ..+.++.  ...
T Consensus        98 ~~~~v~~--~d~~~~~~-------~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfpt---ksl~Gr~~gm~~  165 (200)
T 3fzg_A           98 TTIKYRF--LNKESDVY-------KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPI---KSLSGKEKGMEE  165 (200)
T ss_dssp             CSSEEEE--ECCHHHHT-------TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEEC---CCCC--CTTCCC
T ss_pred             CCccEEE--ecccccCC-------CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeCh---HHhcCCCcchhh
Confidence            9877777  55543321       688999986432   12222334478899999999997764   2222221  111


Q ss_pred             cchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          259 AKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       259 ~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      ..   -+.|.+.+ ..+...+--.-+|+-+....+|
T Consensus       166 ~Y---~~~~~~~~-~~~~~~~~~~~~~nEl~y~~~~  197 (200)
T 3fzg_A          166 NY---QLWFESFT-KGWIKILDSKVIGNELVYITSG  197 (200)
T ss_dssp             CH---HHHHHHHT-TTTSCEEEEEEETTEEEEEECC
T ss_pred             hH---HHHHHHhc-cCcceeeeeeeeCceEEEEEec
Confidence            11   23444445 4444555566777777666553

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.21  E-value=5.8e-11  Score=106.82  Aligned_cols=105  Identities=11%  Similarity=0.063  Sum_probs=86.5

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..++.. + ..+++++|+++++++.|++++...++..+++++.+|+.+
T Consensus        63 ~~~~~vLDiGcG~---------------G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  125 (298)
T 1ri5_A           63 KRGDSVLDLGCGK---------------GGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG  125 (298)
T ss_dssp             CTTCEEEEETCTT---------------TTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT
T ss_pred             CCCCeEEEECCCC---------------CHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc
Confidence            4567999999999               9888887775 2 469999999999999999999998887889999999876


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEEEec
Q 022597          198 SLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-------~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ...     ...++||+|+....       ..+...+++.+.++|+|||.+++..
T Consensus       126 ~~~-----~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          126 RHM-----DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             SCC-----CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccc-----CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            410     01578999998643       3456789999999999999999864

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.21  E-value=6.4e-11  Score=101.26  Aligned_cols=109  Identities=16%  Similarity=0.107  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC
Q 022597          107 QAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH  186 (294)
Q Consensus       107 ~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~  186 (294)
                      ...++..+.... +.+|||+|||+               |..+..++..   +.+++++|+++++++.|+++.      .
T Consensus        30 ~~~~l~~~~~~~-~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~   84 (203)
T 3h2b_A           30 DRVLIEPWATGV-DGVILDVGSGT---------------GRWTGHLASL---GHQIEGLEPATRLVELARQTH------P   84 (203)
T ss_dssp             THHHHHHHHHHC-CSCEEEETCTT---------------CHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------T
T ss_pred             HHHHHHHHhccC-CCeEEEecCCC---------------CHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------C
Confidence            344455555433 67999999999               9999998886   569999999999999998872      3


Q ss_pred             cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +++++.+|+.+..  +    ..++||+|+....     ..+...+++.+.+.|+|||.+++....
T Consensus        85 ~~~~~~~d~~~~~--~----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  143 (203)
T 3h2b_A           85 SVTFHHGTITDLS--D----SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFS  143 (203)
T ss_dssp             TSEEECCCGGGGG--G----SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCeEEeCcccccc--c----CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            6899999997642  1    1579999998542     347789999999999999999987643

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.21  E-value=4.5e-11  Score=105.63  Aligned_cols=100  Identities=23%  Similarity=0.227  Sum_probs=82.0

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..++..   +.+|+++|+++++++.|++++  .+...+++++.+|+.+
T Consensus        38 ~~~~~vLDiG~G~---------------G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~~~d~~~   97 (263)
T 2yqz_A           38 GEEPVFLELGVGT---------------GRIALPLIAR---GYRYIALDADAAMLEVFRQKI--AGVDRKVQVVQADARA   97 (263)
T ss_dssp             SSCCEEEEETCTT---------------STTHHHHHTT---TCEEEEEESCHHHHHHHHHHT--TTSCTTEEEEESCTTS
T ss_pred             CCCCEEEEeCCcC---------------CHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh--hccCCceEEEEccccc
Confidence            4567999999999               9999988875   579999999999999999988  3344579999999865


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..  +    ..++||+|+....   ..+...+++.+.+.|+|||.+++.
T Consensus        98 ~~--~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A           98 IP--L----PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             CC--S----CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CC--C----CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            31  1    2478999998654   235688999999999999999986

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.21  E-value=1.5e-10  Score=110.15  Aligned_cols=117  Identities=22%  Similarity=0.245  Sum_probs=94.4

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.+..+..|..++ ..++.+|||+|||+               |..++.++...+ .++|+++|+|+++++.|+++++.
T Consensus       201 ~l~~~la~~l~~~~-~~~~~~vLD~gCGs---------------G~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~  263 (373)
T 3tm4_A          201 HLKASIANAMIELA-ELDGGSVLDPMCGS---------------GTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALA  263 (373)
T ss_dssp             CCCHHHHHHHHHHH-TCCSCCEEETTCTT---------------CHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHhh-cCCCCEEEEccCcC---------------cHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHH
Confidence            46777777777777 67788999999999               999999888643 46899999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----------cchHHHHHHHHhcccCCeEEEE
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----------~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +|+.+++++.++|+.+...      ..++||+|+.|++-           ..|.++++.+.+.| +|+.+++
T Consensus       264 ~gl~~~i~~~~~D~~~~~~------~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          264 AGVLDKIKFIQGDATQLSQ------YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             TTCGGGCEEEECCGGGGGG------TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             cCCCCceEEEECChhhCCc------ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            9998899999999987532      14789999998761           12678888888888 4444443

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.21  E-value=2.7e-10  Score=97.77  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=88.4

Q ss_pred             CCCCHHHHHHHHHHHh---hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQ---ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK  177 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~---~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~  177 (294)
                      ....+.....+...+.   ..++.+|||+|||+               |..+..++...  ..+|+++|+++++++.|++
T Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~---------------G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~   90 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGT---------------GVLSYGALLLG--AKEVICVEVDKEAVDVLIE   90 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTT---------------CHHHHHHHHTT--CSEEEEEESCHHHHHHHHH
T ss_pred             ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCC---------------CHHHHHHHHcC--CCEEEEEECCHHHHHHHHH
Confidence            4456666666655554   33567999999999               99999988752  3589999999999999999


Q ss_pred             HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 022597          178 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       178 ~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +++..|+  +++++++|+.+.         .++||+|++|++     ......+++.+.+.+  ||++++.
T Consensus        91 ~~~~~~~--~~~~~~~d~~~~---------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~  148 (207)
T 1wy7_A           91 NLGEFKG--KFKVFIGDVSEF---------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH  148 (207)
T ss_dssp             HTGGGTT--SEEEEESCGGGC---------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE
T ss_pred             HHHHcCC--CEEEEECchHHc---------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE
Confidence            9998887  699999999764         358999999976     233567888888887  6665544

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.21  E-value=2.7e-11  Score=106.78  Aligned_cols=98  Identities=14%  Similarity=0.127  Sum_probs=80.5

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||||||+               |..+..++..   +.+|+++|+++++++.|+++         ++++.+|+.+
T Consensus        40 ~~~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~   92 (240)
T 3dli_A           40 KGCRRVLDIGCGR---------------GEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIE   92 (240)
T ss_dssp             TTCSCEEEETCTT---------------THHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHH
T ss_pred             cCCCeEEEEeCCC---------------CHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHH
Confidence            4567999999999               9999988886   46899999999999988765         7888999877


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+..+    ..++||+|+....     .+.+..+++.+.+.|+|||.+++....
T Consensus        93 ~~~~~----~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A           93 YLKSL----PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             HHHTS----CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             Hhhhc----CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            65433    2579999997533     346789999999999999999997653

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.20  E-value=2.9e-11  Score=110.24  Aligned_cols=102  Identities=10%  Similarity=0.140  Sum_probs=84.2

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC--CcEEEEEcchhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAAD  197 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~--~~v~~~~gda~~  197 (294)
                      +.+|||||||+               |..+..++..   +.+|+++|+++++++.|++++...++.  .+++++.+|+.+
T Consensus        83 ~~~vLDlGcG~---------------G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~  144 (299)
T 3g2m_A           83 SGPVLELAAGM---------------GRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA  144 (299)
T ss_dssp             CSCEEEETCTT---------------TTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred             CCcEEEEeccC---------------CHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence            44999999999               9999998875   578999999999999999999887643  679999999976


Q ss_pred             hHHHHhhcCCCCceeEEEEcC------CccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDA------EKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~------~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ...       .++||+|++..      +......+++.+.+.|+|||.+++....
T Consensus       145 ~~~-------~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  192 (299)
T 3g2m_A          145 FAL-------DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM  192 (299)
T ss_dssp             CCC-------SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCc-------CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence            421       57899988641      2335688999999999999999997653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.20  E-value=2.8e-11  Score=107.18  Aligned_cols=98  Identities=13%  Similarity=0.168  Sum_probs=81.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...+  .+|+++|+++++++.|++++.    ..+++++.+|+.+.
T Consensus        44 ~~~~vLD~GcG~---------------G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~  102 (253)
T 3g5l_A           44 NQKTVLDLGCGF---------------GWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDI  102 (253)
T ss_dssp             TTCEEEEETCTT---------------CHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGC
T ss_pred             CCCEEEEECCCC---------------CHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhC
Confidence            567999999999               999999988632  399999999999999998765    45799999998753


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .      ...++||+|+....   ..+...+++.+.+.|+|||.+++.
T Consensus       103 ~------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          103 A------IEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             C------CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             C------CCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            1      12579999998653   346789999999999999999996

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.20  E-value=6.1e-11  Score=103.62  Aligned_cols=96  Identities=18%  Similarity=0.205  Sum_probs=80.0

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      +.+|||+|||+               |..+..++..    .+++++|+++++++.|++++...+  .+++++.+|+.+..
T Consensus        34 ~~~vLdiG~G~---------------G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~   92 (243)
T 3d2l_A           34 GKRIADIGCGT---------------GTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE   92 (243)
T ss_dssp             TCEEEEESCTT---------------CHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC
T ss_pred             CCeEEEecCCC---------------CHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC
Confidence            46999999999               9988887764    699999999999999999998876  46899999987641


Q ss_pred             HHHhhcCCCCceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEEEe
Q 022597          200 KALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~-------~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                        .     .++||+|++..+       ......+++.+.++|+|||.++++
T Consensus        93 --~-----~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           93 --L-----PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             --C-----SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --C-----CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence              1     378999998641       245678899999999999999984

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.20  E-value=4.7e-11  Score=114.62  Aligned_cols=105  Identities=18%  Similarity=0.227  Sum_probs=86.1

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++||||||||               |..++..+++-  ..+|++||.++ +++.|+++++.+|+.++|+++++++
T Consensus        80 ~~~~~k~VLDvG~Gt---------------GiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~  141 (376)
T 4hc4_A           80 AALRGKTVLDVGAGT---------------GILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPV  141 (376)
T ss_dssp             HHHTTCEEEEETCTT---------------SHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCT
T ss_pred             HhcCCCEEEEeCCCc---------------cHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeee
Confidence            345778999999999               99998887753  36899999996 8899999999999999999999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcC------CccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDA------EKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~------~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.-  +     .+++|+|+...      .......++....++|+|||.++-+..
T Consensus       142 ~~~~--l-----pe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~a  190 (376)
T 4hc4_A          142 ETVE--L-----PEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASA  190 (376)
T ss_dssp             TTCC--C-----SSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             eeec--C-----CccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccc
Confidence            7751  1     57899998632      134567788888899999999986654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.20  E-value=1.6e-10  Score=109.22  Aligned_cols=107  Identities=14%  Similarity=0.157  Sum_probs=90.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+..+|||||||+               |..+..+++..| +.+++++|+ +++++.|++++...|+.++++++.+|..+
T Consensus       201 ~~~~~vlDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~  263 (369)
T 3gwz_A          201 SGAATAVDIGGGR---------------GSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE  263 (369)
T ss_dssp             TTCSEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred             ccCcEEEEeCCCc---------------cHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC
Confidence            4567999999999               999999999876 789999999 99999999999999999999999999873


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      ..        ..+||+|++..-     ......+++.+.+.|+|||.+++.+..++.
T Consensus       264 ~~--------p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          264 TI--------PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE  312 (369)
T ss_dssp             CC--------CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred             CC--------CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            21        237999987532     333457999999999999999998776544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.19  E-value=4.3e-11  Score=103.44  Aligned_cols=110  Identities=19%  Similarity=0.142  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      ..++..+. ..++.+|||+|||+               |..+..++..   +.+++++|+++++++.|++++.     .+
T Consensus        35 ~~~l~~~~-~~~~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~   90 (220)
T 3hnr_A           35 EDILEDVV-NKSFGNVLEFGVGT---------------GNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KE   90 (220)
T ss_dssp             HHHHHHHH-HTCCSEEEEECCTT---------------SHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TT
T ss_pred             HHHHHHhh-ccCCCeEEEeCCCC---------------CHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----Cc
Confidence            34444443 34677999999999               9999998885   5799999999999999998765     46


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc---cch--HHHHHHHHhcccCCeEEEEecccCC
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEK---RMY--QEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~---~~~--~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      ++++.+|+.+..      . .++||+|+....-   .+.  ..+++.+.+.|+|||.+++.+..+.
T Consensus        91 ~~~~~~d~~~~~------~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  149 (220)
T 3hnr_A           91 FSITEGDFLSFE------V-PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFA  149 (220)
T ss_dssp             CCEESCCSSSCC------C-CSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred             eEEEeCChhhcC------C-CCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence            899999987641      1 2789999987542   222  3489999999999999999875443

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.19  E-value=9.1e-11  Score=108.80  Aligned_cols=107  Identities=12%  Similarity=0.082  Sum_probs=89.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +..+|||||||+               |..+..++...| +.+++++|+ +++++.|+++++..++.+++++..+|..+.
T Consensus       169 ~~~~vlDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  231 (332)
T 3i53_A          169 ALGHVVDVGGGS---------------GGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP  231 (332)
T ss_dssp             GGSEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             CCCEEEEeCCCh---------------hHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC
Confidence            357999999999               999999999886 779999999 999999999999999989999999998642


Q ss_pred             HHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597          199 LKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      .        ..+||+|++..-     .+....+++.+.+.|+|||.+++.+..++..
T Consensus       232 ~--------p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  280 (332)
T 3i53_A          232 L--------PAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE  280 (332)
T ss_dssp             C--------CCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC--
T ss_pred             C--------CCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC
Confidence            1        238999987432     3346789999999999999999987765543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.19  E-value=3.5e-11  Score=104.24  Aligned_cols=103  Identities=17%  Similarity=0.252  Sum_probs=84.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC----CcEEEEEcc
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS----HKVKIKHGL  194 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~----~~v~~~~gd  194 (294)
                      ++.+|||+|||+               |..+..++..   +.+|+++|+++.+++.|+++++..++.    .++++..+|
T Consensus        30 ~~~~vLdiG~G~---------------G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d   91 (235)
T 3sm3_A           30 EDDEILDIGCGS---------------GKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVEN   91 (235)
T ss_dssp             TTCEEEEETCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECC
T ss_pred             CCCeEEEECCCC---------------CHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEec
Confidence            567999999999               9999999886   579999999999999999999887773    468999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.+..      ...++||+|++...      ......+++.+.+.|+|||.+++.+.
T Consensus        92 ~~~~~------~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           92 ASSLS------FHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             TTSCC------SCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccC------CCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            87531      12578999998643      22344899999999999999998754

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.19  E-value=3.6e-11  Score=106.25  Aligned_cols=97  Identities=14%  Similarity=0.141  Sum_probs=81.8

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++...+ +++++++|+++++++.++++      ..+++++.+|+.+.
T Consensus        33 ~~~~vLdiG~G~---------------G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~   90 (259)
T 2p35_A           33 RVLNGYDLGCGP---------------GNSTELLTDRYG-VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATW   90 (259)
T ss_dssp             CCSSEEEETCTT---------------THHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTC
T ss_pred             CCCEEEEecCcC---------------CHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhc
Confidence            456999999999               999999999875 67999999999999999887      24689999998764


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEec
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .       ..++||+|+....   ..+...+++.+.+.|+|||.+++..
T Consensus        91 ~-------~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           91 K-------PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             C-------CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             C-------ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            2       1578999998754   3457889999999999999999864

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.18  E-value=7.4e-11  Score=101.61  Aligned_cols=97  Identities=14%  Similarity=0.208  Sum_probs=80.0

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.++.+|||+|||+               |..+..++..   +.+++++|+++++++.|++++       ++++..+|+.
T Consensus        41 ~~~~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~   95 (211)
T 3e23_A           41 LPAGAKILELGCGA---------------GYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFH   95 (211)
T ss_dssp             SCTTCEEEESSCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGG
T ss_pred             cCCCCcEEEECCCC---------------CHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeec
Confidence            34567999999999               9999998875   579999999999999999887       3667788886


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +..       ..++||+|+....     ......+++.+.+.|+|||.+++...
T Consensus        96 ~~~-------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A           96 QLD-------AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             GCC-------CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCC-------CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            542       1689999998653     23667899999999999999999744

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.18  E-value=6.4e-11  Score=112.53  Aligned_cols=103  Identities=12%  Similarity=0.085  Sum_probs=84.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++++|||+| |+               |..++.++...+ .++|+++|+++++++.|+++++++|+. +++++.+|+.+.
T Consensus       172 ~~~~VLDlG-G~---------------G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~  233 (373)
T 2qm3_A          172 ENKDIFVLG-DD---------------DLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKP  233 (373)
T ss_dssp             TTCEEEEES-CT---------------TCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSC
T ss_pred             CCCEEEEEC-CC---------------CHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhh
Confidence            568999999 99               999999988643 579999999999999999999999987 799999999773


Q ss_pred             HHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCe-EEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGG-IIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG-~ivid  243 (294)
                      ++..    ..++||+|++|++.  .....+++.+.+.|+||| ++++.
T Consensus       234 l~~~----~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          234 LPDY----ALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             CCTT----TSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             chhh----ccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence            3210    03589999999752  235788899999999999 43444

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.18  E-value=7.1e-11  Score=105.26  Aligned_cols=96  Identities=17%  Similarity=0.160  Sum_probs=79.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++..   +.+|+++|+++++++.|++++.      +++++.+|+.+.
T Consensus        50 ~~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~  105 (263)
T 3pfg_A           50 KAASLLDVACGT---------------GMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDF  105 (263)
T ss_dssp             TCCEEEEETCTT---------------SHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTC
T ss_pred             CCCcEEEeCCcC---------------CHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHC
Confidence            447999999999               9999888775   4689999999999999998753      689999998764


Q ss_pred             HHHHhhcCCCCceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~-------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..       .++||+|++...       ......+++.+.+.|+|||.++++..
T Consensus       106 ~~-------~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          106 SL-------GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             CC-------SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             Cc-------cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            21       478999998752       13566889999999999999999754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.17  E-value=1.3e-10  Score=99.88  Aligned_cols=108  Identities=17%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             HHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEE
Q 022597          111 LAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  190 (294)
Q Consensus       111 L~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~  190 (294)
                      +.......++.+|||+|||+               |..+..++..   +.+++++|+++++++.|+++       .++++
T Consensus        44 ~~~~~~~~~~~~vLdiG~G~---------------G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~   98 (227)
T 3e8s_A           44 ILLAILGRQPERVLDLGCGE---------------GWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEV   98 (227)
T ss_dssp             HHHHHHHTCCSEEEEETCTT---------------CHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCE
T ss_pred             HHHHhhcCCCCEEEEeCCCC---------------CHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------ccccc
Confidence            33334455678999999999               9999888876   57999999999999999876       35778


Q ss_pred             EEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          191 KHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..++..+.....  ....++||+|+....  ..+...+++.+.+.|+|||.+++...
T Consensus        99 ~~~~~~~~~~~~--~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A           99 HLASYAQLAEAK--VPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             EECCHHHHHTTC--SCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             chhhHHhhcccc--cccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            888886642111  112456999987643  55678999999999999999999765

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.17  E-value=1.3e-10  Score=108.93  Aligned_cols=104  Identities=19%  Similarity=0.196  Sum_probs=87.5

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++.+|||||||+               |..+..++...+ +.+++++|+ +++++.|+++++..|+.++++++.+|..
T Consensus       180 ~~~~~~vlDvG~G~---------------G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~  242 (374)
T 1qzz_A          180 WSAVRHVLDVGGGN---------------GGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFF  242 (374)
T ss_dssp             CTTCCEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             CCCCCEEEEECCCc---------------CHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCC
Confidence            34678999999999               999999999886 789999999 9999999999999999889999999987


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.+        ...||+|++...     ......+++.+.+.|+|||.+++.+.
T Consensus       243 ~~~--------~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          243 KPL--------PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             SCC--------SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CcC--------CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            522        235999987543     22345899999999999998887665

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.16  E-value=2.3e-10  Score=108.58  Aligned_cols=125  Identities=18%  Similarity=0.084  Sum_probs=90.9

Q ss_pred             CCCCCCHHHHH-HHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHH
Q 022597           99 SQMQVSPDQAQ-LLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVA  175 (294)
Q Consensus        99 ~~~~v~~~~~~-lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A  175 (294)
                      +..++.+.+.+ +...+....  .+.+|||+|||+               |..++.++..   ..+|+++|.++++++.|
T Consensus       190 ~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~---------------G~~~l~la~~---~~~V~gvd~~~~ai~~a  251 (369)
T 3bt7_A          190 SFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGN---------------GNFSLALARN---FDRVLATEIAKPSVAAA  251 (369)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTT---------------SHHHHHHGGG---SSEEEEECCCHHHHHHH
T ss_pred             CeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCC---------------CHHHHHHHhc---CCEEEEEECCHHHHHHH
Confidence            44566666544 444444433  247899999999               9999988874   46999999999999999


Q ss_pred             HHHHHHhCCCCcEEEEEcchhhhHHHHhhcCC----------CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          176 KKYYERAGVSHKVKIKHGLAADSLKALILNGE----------ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       176 ~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~----------~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +++++.+|+. +++++.+|+.+.++.+...+.          ..+||+|++|++....   .+.+.+.|+++|.+++-..
T Consensus       252 ~~n~~~ng~~-~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          252 QYNIAANHID-NVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGL---DSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             HHHHHHTTCC-SEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCC---CHHHHHHHTTSSEEEEEES
T ss_pred             HHHHHHcCCC-ceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcccc---HHHHHHHHhCCCEEEEEEC
Confidence            9999999985 799999999988766532110          0379999999875432   2334555667887776544

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.15  E-value=8.4e-11  Score=106.02  Aligned_cols=102  Identities=18%  Similarity=0.200  Sum_probs=82.9

Q ss_pred             HHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          113 MLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       113 ~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      ..+...++.+|||||||+               |..+..++.   ++++|+++|+++++++.|++++      .++++..
T Consensus        51 ~~l~~~~~~~vLDiGcG~---------------G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~  106 (279)
T 3ccf_A           51 QLLNPQPGEFILDLGCGT---------------GQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY------PHLHFDV  106 (279)
T ss_dssp             HHHCCCTTCEEEEETCTT---------------SHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC------TTSCEEE
T ss_pred             HHhCCCCCCEEEEecCCC---------------CHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC------CCCEEEE
Confidence            334455678999999999               999999988   3689999999999999998765      3688999


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +|+.+..  .     .++||+|+....   ..+...+++.+.+.|+|||.+++...
T Consensus       107 ~d~~~~~--~-----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          107 ADARNFR--V-----DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             CCTTTCC--C-----SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CChhhCC--c-----CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            9987631  1     478999998654   24678899999999999999998644

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.15  E-value=1.9e-10  Score=107.48  Aligned_cols=106  Identities=20%  Similarity=0.218  Sum_probs=88.4

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.+|||||||+               |..+..++...+ +.+++++|+ +++++.|+++++..|+.++++++.+|.
T Consensus       180 ~~~~~~~vLDvG~G~---------------G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~  242 (360)
T 1tw3_A          180 DWTNVRHVLDVGGGK---------------GGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF  242 (360)
T ss_dssp             CCTTCSEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             CCccCcEEEEeCCcC---------------cHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCC
Confidence            345667999999999               999999999876 689999999 999999999999999988999999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+.+        ...||+|++...     ......+++.+.+.|+|||.+++.+..
T Consensus       243 ~~~~--------~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          243 FEPL--------PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             TSCC--------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCC--------CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            7532        245999987543     223468999999999999998887665

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.15  E-value=4.9e-11  Score=108.40  Aligned_cols=94  Identities=17%  Similarity=0.174  Sum_probs=75.2

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      ..+|||||||+               |..+..++..   +.+|+++|+|+++++.|++       ..+++++++++.+..
T Consensus        40 ~~~vLDvGcGt---------------G~~~~~l~~~---~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~~   94 (257)
T 4hg2_A           40 RGDALDCGCGS---------------GQASLGLAEF---FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDTG   94 (257)
T ss_dssp             SSEEEEESCTT---------------TTTHHHHHTT---CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCCC
T ss_pred             CCCEEEEcCCC---------------CHHHHHHHHh---CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhhc
Confidence            35899999999               9999988875   4799999999999887653       247999999987641


Q ss_pred             HHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEec
Q 022597          200 KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                            .++++||+|++...  .-+...+++.+.+.|||||++++-.
T Consensus        95 ------~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A           95 ------LPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             ------CCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------ccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence                  12689999987532  3346789999999999999998643

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.15  E-value=3.1e-11  Score=107.18  Aligned_cols=102  Identities=12%  Similarity=0.046  Sum_probs=80.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCC-hHHHHHH---HHHHHHhCCCCcEEEEEcc
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERD-ARSLEVA---KKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~-~~~~~~A---~~~~~~~gl~~~v~~~~gd  194 (294)
                      ++.+|||||||+               |..+..+++..+ +.+|+|+|++ +.+++.|   +++.++.|+. +++++.+|
T Consensus        24 ~~~~vLDiGCG~---------------G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d   86 (225)
T 3p2e_A           24 FDRVHIDLGTGD---------------GRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAA   86 (225)
T ss_dssp             CSEEEEEETCTT---------------SHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCB
T ss_pred             CCCEEEEEeccC---------------cHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcC
Confidence            566999999999               999999987654 7899999999 5555555   8888888876 59999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCcc--------chHHHHHHHHhcccCCeEEEE
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~--------~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +.+.....     .+.+|.+++..+..        .+.++++.+.++|||||.+++
T Consensus        87 ~~~l~~~~-----~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           87 AESLPFEL-----KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             TTBCCGGG-----TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHhhhhc-----cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            97752211     36788888765421        246789999999999999998

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.15  E-value=7.3e-11  Score=103.11  Aligned_cols=107  Identities=15%  Similarity=0.194  Sum_probs=83.9

Q ss_pred             HHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEE
Q 022597          111 LAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  190 (294)
Q Consensus       111 L~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~  190 (294)
                      +..++...++.+|||+|||+               |..+..++.. + ..+++++|+++++++.|+++...    .++++
T Consensus        35 l~~~~~~~~~~~vLdiG~G~---------------G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~   93 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGF---------------GWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPD----TGITY   93 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTT---------------CHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCS----SSEEE
T ss_pred             HHHhccccCCCEEEEEcCcC---------------CHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhccc----CCceE
Confidence            44444445677999999999               9999988876 2 23999999999999999887643    36999


Q ss_pred             EEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEec
Q 022597          191 KHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +.+|+.+..  +    ..++||+|+....   ..+...+++.+.+.|+|||.+++..
T Consensus        94 ~~~d~~~~~--~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A           94 ERADLDKLH--L----PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             EECCGGGCC--C----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcChhhcc--C----CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence            999987642  1    2578999998643   2456889999999999999999864

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.15  E-value=3.4e-10  Score=110.02  Aligned_cols=116  Identities=15%  Similarity=0.164  Sum_probs=91.7

Q ss_pred             CCCCCCHHHHHHH-HHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597           99 SQMQVSPDQAQLL-AMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK  177 (294)
Q Consensus        99 ~~~~v~~~~~~lL-~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~  177 (294)
                      +..+..+.+.+.| ..+....++.+|||+|||+               |..++.++..   +.+|+++|+++++++.|++
T Consensus       269 ~F~q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~---------------G~~sl~la~~---~~~V~gvD~s~~ai~~A~~  330 (425)
T 2jjq_A          269 SFFQTNSYQAVNLVRKVSELVEGEKILDMYSGV---------------GTFGIYLAKR---GFNVKGFDSNEFAIEMARR  330 (425)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHCCSSEEEEETCTT---------------THHHHHHHHT---TCEEEEEESCHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhhccCCCCEEEEeeccc---------------hHHHHHHHHc---CCEEEEEECCHHHHHHHHH
Confidence            4556677665544 4444455678999999999               9999999875   4699999999999999999


Q ss_pred             HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchH-HHHHHHHhcccCCeEEEEe
Q 022597          178 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       178 ~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~-~~~~~~~~lLkpgG~ivid  243 (294)
                      +++.+|+.  ++++.+|+.+.+        ..+||+|++|++...+. .+++.+. .|+|||++++.
T Consensus       331 n~~~ngl~--v~~~~~d~~~~~--------~~~fD~Vv~dPPr~g~~~~~~~~l~-~l~p~givyvs  386 (425)
T 2jjq_A          331 NVEINNVD--AEFEVASDREVS--------VKGFDTVIVDPPRAGLHPRLVKRLN-REKPGVIVYVS  386 (425)
T ss_dssp             HHHHHTCC--EEEEECCTTTCC--------CTTCSEEEECCCTTCSCHHHHHHHH-HHCCSEEEEEE
T ss_pred             HHHHcCCc--EEEEECChHHcC--------ccCCCEEEEcCCccchHHHHHHHHH-hcCCCcEEEEE
Confidence            99999986  999999998753        23799999998854443 4565554 58999999875

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.14  E-value=7.6e-11  Score=103.84  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=83.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||||||+               |..+..++...  ..+|+++|+++++++.|+++++..   .+++++.+|+.+
T Consensus        92 ~~~~~vLDiG~G~---------------G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~  151 (254)
T 1xtp_A           92 HGTSRALDCGAGI---------------GRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMET  151 (254)
T ss_dssp             CCCSEEEEETCTT---------------THHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGG
T ss_pred             cCCCEEEEECCCc---------------CHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHH
Confidence            3567999999999               99999988875  468999999999999999987653   579999999876


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..  +    ..++||+|+....     ..+...+++.+.+.|+|||.+++.+.
T Consensus       152 ~~--~----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          152 AT--L----PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             CC--C----CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CC--C----CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            31  1    2478999997643     24467899999999999999998764

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.14  E-value=2.5e-10  Score=104.26  Aligned_cols=108  Identities=14%  Similarity=0.154  Sum_probs=77.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeC-ChHHHHHHHHHH-----HHhCCC----Cc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACER-DARSLEVAKKYY-----ERAGVS----HK  187 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~-~~~~~~~A~~~~-----~~~gl~----~~  187 (294)
                      .++++|||+|||+               |..++.++.. + .++|+++|+ ++++++.|++++     +..|+.    ++
T Consensus        78 ~~~~~vLDlG~G~---------------G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~  140 (281)
T 3bzb_A           78 IAGKTVCELGAGA---------------GLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRAS  140 (281)
T ss_dssp             TTTCEEEETTCTT---------------SHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CC
T ss_pred             cCCCeEEEecccc---------------cHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCC
Confidence            4667999999999               9999988874 2 359999999 899999999999     666665    57


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEE-cCC--ccchHHHHHHHHhccc---C--CeEEEE
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFV-DAE--KRMYQEYFELLLQLIR---V--GGIIVI  242 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfi-D~~--~~~~~~~~~~~~~lLk---p--gG~ivi  242 (294)
                      +++...+..+....+...-..++||+|+. |..  ......+++.+.++|+   |  ||.+++
T Consensus       141 v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          141 PKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             CEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             eEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            88886554332222210001478999986 543  4568899999999999   9  997665

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.13  E-value=1.1e-10  Score=109.61  Aligned_cols=100  Identities=18%  Similarity=0.227  Sum_probs=83.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+.+|||+|||+               |..+..++...+ ..+|+++|+++.+++.|+++++..++.  ++++.+|..+
T Consensus       195 ~~~~~VLDlGcG~---------------G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~  256 (343)
T 2pjd_A          195 HTKGKVLDVGCGA---------------GVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFS  256 (343)
T ss_dssp             TCCSBCCBTTCTT---------------SHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTT
T ss_pred             CCCCeEEEecCcc---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccc
Confidence            3466999999999               999999999865 579999999999999999999998875  5678888865


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~--------~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..        .++||+|+.+..-        .....+++.+.+.|+|||.+++-
T Consensus       257 ~~--------~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          257 EV--------KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             TC--------CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cc--------cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            31        4789999997642        23578899999999999999874

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.13  E-value=4.5e-10  Score=93.32  Aligned_cols=100  Identities=12%  Similarity=0.051  Sum_probs=80.8

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.+|||+|||+               |..+..++...   .+++++|+++++++.++++      ..++++..+| 
T Consensus        14 ~~~~~~~vLDiG~G~---------------G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d-   68 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGN---------------GFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP-   68 (170)
T ss_dssp             HSSCCEEEEEETCTT---------------CTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG-
T ss_pred             CcCCCCeEEEECCCC---------------CHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC-
Confidence            445667999999999               99999988864   4999999999999999887      3479999888 


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      ...        ..++||+|+....   ..+...+++.+.+.|+|||.+++.+....
T Consensus        69 ~~~--------~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           69 KEI--------PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             GGS--------CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CCC--------CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            211        2578999997643   34678999999999999999999876433

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.13  E-value=2.8e-10  Score=103.65  Aligned_cols=109  Identities=14%  Similarity=0.217  Sum_probs=76.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC---CCcEE--EEEeCChHHHHHHHHHHHHh-CCCCcEEE--
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP---ESGCL--VACERDARSLEVAKKYYERA-GVSHKVKI--  190 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~---~~~~v--~~id~~~~~~~~A~~~~~~~-gl~~~v~~--  190 (294)
                      ++.+|||||||+               |..+..++..+.   ++.++  +++|+|+++++.|++.++.. ++. ++++  
T Consensus        52 ~~~~VLDiG~Gt---------------G~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-~v~~~~  115 (292)
T 2aot_A           52 SEIKILSIGGGA---------------GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE-NVKFAW  115 (292)
T ss_dssp             SEEEEEEETCTT---------------SHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT-TEEEEE
T ss_pred             CCCeEEEEcCCC---------------CHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC-cceEEE
Confidence            345999999999               987765443321   25644  99999999999999998764 443 4544  


Q ss_pred             EEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEe
Q 022597          191 KHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..+++.+....+......++||+|++...   ..+....++.+.++|||||.+++-
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          116 HKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             ECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence            45565543322110012578999987643   456788999999999999999985

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.12  E-value=1.6e-10  Score=107.02  Aligned_cols=103  Identities=18%  Similarity=0.137  Sum_probs=87.9

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      .+|||+|||+               |..+..++...| +.+++++|+ +++++.|+++++..|+.++++++.+|..+.  
T Consensus       169 ~~vlDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--  229 (334)
T 2ip2_A          169 RSFVDVGGGS---------------GELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE--  229 (334)
T ss_dssp             CEEEEETCTT---------------CHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC--
T ss_pred             CEEEEeCCCc---------------hHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC--
Confidence            7999999999               999999999886 679999999 999999999999888888999999998752  


Q ss_pred             HHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          201 ALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                       +     .++||+|++...     ......+++.+.+.|+|||.+++.+..++
T Consensus       230 -~-----~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  276 (334)
T 2ip2_A          230 -V-----PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS  276 (334)
T ss_dssp             -C-----CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             -C-----CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence             1     367999997543     23345899999999999999998877554

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.12  E-value=4.4e-10  Score=105.42  Aligned_cols=106  Identities=14%  Similarity=0.139  Sum_probs=88.5

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++.+|||||||+               |..+..++...| +.+++++|+ +++++.|+++++..|+.++++++.+|..
T Consensus       188 ~~~~~~vLDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~  250 (359)
T 1x19_A          188 LDGVKKMIDVGGGI---------------GDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIY  250 (359)
T ss_dssp             CTTCCEEEEESCTT---------------CHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             CCCCCEEEEECCcc---------------cHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccc
Confidence            45667999999999               999999999886 789999999 9999999999999999889999999997


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      +. +       ...+|+|++...     ......+++.+.+.|+|||.+++.+...
T Consensus       251 ~~-~-------~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~  298 (359)
T 1x19_A          251 KE-S-------YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI  298 (359)
T ss_dssp             TS-C-------CCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred             cC-C-------CCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            64 1       233499987543     2336789999999999999997766544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.12  E-value=1.2e-10  Score=114.85  Aligned_cols=100  Identities=13%  Similarity=0.164  Sum_probs=83.4

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++|||||||+               |..++.+++. + ..+|+++|+++ +++.|+++++.+|+.++++++++|+.+
T Consensus       157 ~~~~~VLDiGcGt---------------G~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~  218 (480)
T 3b3j_A          157 FKDKIVLDVGCGS---------------GILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE  218 (480)
T ss_dssp             TTTCEEEEESCST---------------THHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT
T ss_pred             cCCCEEEEecCcc---------------cHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh
Confidence            4668999999999               9999988873 3 57999999998 999999999999998899999999976


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ..  +     .++||+|+.+..     .+...+.+..+.+.|+|||.+++
T Consensus       219 ~~--~-----~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          219 VS--L-----PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             CC--C-----SSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             Cc--c-----CCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            41  1     368999998754     24456677777899999999985

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.12  E-value=2.7e-11  Score=106.28  Aligned_cols=92  Identities=12%  Similarity=0.084  Sum_probs=75.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..++..   +.+|+++|+++++++.|+++      ..+++++++|+.+
T Consensus        47 ~~~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~  102 (226)
T 3m33_A           47 TPQTRVLEAGCGH---------------GPDAARFGPQ---AARWAAYDFSPELLKLARAN------APHADVYEWNGKG  102 (226)
T ss_dssp             CTTCEEEEESCTT---------------SHHHHHHGGG---SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCS
T ss_pred             CCCCeEEEeCCCC---------------CHHHHHHHHc---CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhh
Confidence            4567999999999               9999999886   57999999999999999987      2369999999864


Q ss_pred             hHHHHhhcCC-CCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          198 SLKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       198 ~l~~l~~~~~-~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      .++.     . .++||+|+...   +...+++.+.+.|+|||.++
T Consensus       103 ~~~~-----~~~~~fD~v~~~~---~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          103 ELPA-----GLGAPFGLIVSRR---GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             SCCT-----TCCCCEEEEEEES---CCSGGGGGHHHHEEEEEEEE
T ss_pred             ccCC-----cCCCCEEEEEeCC---CHHHHHHHHHHHcCCCcEEE
Confidence            3321     1 46899999874   34567788999999999998

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.12  E-value=6e-10  Score=95.41  Aligned_cols=110  Identities=16%  Similarity=0.218  Sum_probs=82.7

Q ss_pred             CCCCHHHHHHHHHHHhh---hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQI---LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK  177 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~---~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~  177 (294)
                      ....+..+..+...+..   .++.+|||+|||+               |..+..++.. + ..+|+++|+++++++.|++
T Consensus        30 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~---------------G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~   92 (200)
T 1ne2_A           30 YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGN---------------GILACGSYLL-G-AESVTAFDIDPDAIETAKR   92 (200)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTT---------------CHHHHHHHHT-T-BSEEEEEESCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCc---------------cHHHHHHHHc-C-CCEEEEEECCHHHHHHHHH
Confidence            34556655555555543   3567999999999               9999998876 2 4589999999999999999


Q ss_pred             HHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEec
Q 022597          178 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       178 ~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +++      +++++.+|+.+.         .++||+|+.+++     ......+++.+.+.+  |+++++.+
T Consensus        93 ~~~------~~~~~~~d~~~~---------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~  147 (200)
T 1ne2_A           93 NCG------GVNFMVADVSEI---------SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGN  147 (200)
T ss_dssp             HCT------TSEEEECCGGGC---------CCCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEEE
T ss_pred             hcC------CCEEEECcHHHC---------CCCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEEc
Confidence            875      589999999763         368999999976     222457888888887  66665553

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.12  E-value=2.2e-10  Score=107.03  Aligned_cols=125  Identities=18%  Similarity=0.131  Sum_probs=96.5

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+.....+++..++...++.+|||+|||+               |..++.++..+++.++|+++|++++.++.+++++++
T Consensus        85 ~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~---------------G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r  149 (309)
T 2b9e_A           85 ILQDRASCLPAMLLDPPPGSHVIDACAAP---------------GNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR  149 (309)
T ss_dssp             EECCTGGGHHHHHHCCCTTCEEEESSCTT---------------CHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHhCCCCCCEEEEeCCCh---------------hHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            44555566777777777888999999999               999999999876678999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc---------c------------------hHHHHHHHHhcc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR---------M------------------YQEYFELLLQLI  234 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~---------~------------------~~~~~~~~~~lL  234 (294)
                      .|+. +++++.+|+.+......   ..++||.|++|++..         +                  ..++++.+.+++
T Consensus       150 ~g~~-~v~~~~~D~~~~~~~~~---~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l  225 (309)
T 2b9e_A          150 AGVS-CCELAEEDFLAVSPSDP---RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFP  225 (309)
T ss_dssp             TTCC-SEEEEECCGGGSCTTCG---GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCT
T ss_pred             cCCC-eEEEEeCChHhcCcccc---ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            9985 59999999876532110   015799999986510         0                  123566677778


Q ss_pred             cCCeEEEEeccc
Q 022597          235 RVGGIIVIDNVL  246 (294)
Q Consensus       235 kpgG~ivid~vl  246 (294)
                      + ||.++....-
T Consensus       226 ~-gG~lvYsTCs  236 (309)
T 2b9e_A          226 S-LQRLVYSTCS  236 (309)
T ss_dssp             T-CCEEEEEESC
T ss_pred             C-CCEEEEECCC
Confidence            6 9998887653

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.11  E-value=4.9e-10  Score=102.89  Aligned_cols=108  Identities=11%  Similarity=0.068  Sum_probs=82.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC------CCCcEEEEE
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG------VSHKVKIKH  192 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g------l~~~v~~~~  192 (294)
                      ++.+|||+|||+               |..+..++..  ...+++++|+++++++.|++++...+      ...+++++.
T Consensus        34 ~~~~VLDlGcG~---------------G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~   96 (313)
T 3bgv_A           34 RDITVLDLGCGK---------------GGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFIT   96 (313)
T ss_dssp             -CCEEEEETCTT---------------TTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEE
T ss_pred             CCCEEEEECCCC---------------cHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEE
Confidence            567999999999               9988888873  36799999999999999999988753      234799999


Q ss_pred             cchhhhHH--HHhhcCCCCceeEEEEcCCc-------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          193 GLAADSLK--ALILNGEASSYDFAFVDAEK-------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       193 gda~~~l~--~l~~~~~~~~fD~vfiD~~~-------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +|+.+...  .+.  ...++||+|+....-       .....+++.+.+.|+|||++++...
T Consensus        97 ~D~~~~~~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  156 (313)
T 3bgv_A           97 ADSSKELLIDKFR--DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP  156 (313)
T ss_dssp             CCTTTSCSTTTCS--STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ecccccchhhhcc--cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            99876410  010  013589999986432       3356899999999999999998654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.10  E-value=1.9e-10  Score=99.69  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=77.8

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH----HHHHhCCCCcEEEEE
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK----YYERAGVSHKVKIKH  192 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~----~~~~~gl~~~v~~~~  192 (294)
                      ..++.+|||+|||+               |..+..++...| +++|+++|+++++++.+.+    +.+..++. ++++++
T Consensus        25 ~~~~~~vLDiGcG~---------------G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~   87 (218)
T 3mq2_A           25 SQYDDVVLDVGTGD---------------GKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLW   87 (218)
T ss_dssp             TTSSEEEEEESCTT---------------CHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEE
T ss_pred             ccCCCEEEEecCCC---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEe
Confidence            45667999999999               999999999865 7899999999998875433    33345554 699999


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEEe
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~--------~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +|+.+. +.     ..++ |.+++....        .+...+++.+.+.|||||.+++.
T Consensus        88 ~d~~~l-~~-----~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           88 ATAERL-PP-----LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             CCSTTC-CS-----CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             cchhhC-CC-----CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence            999763 21     1344 777654421        12378899999999999999984

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.10  E-value=1.8e-10  Score=100.73  Aligned_cols=99  Identities=10%  Similarity=0.107  Sum_probs=81.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++..   +.+|+++|+++++++.++++.    ...+++++.+|+.+.
T Consensus        53 ~~~~vLDiG~G~---------------G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~  110 (242)
T 3l8d_A           53 KEAEVLDVGCGD---------------GYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSL  110 (242)
T ss_dssp             TTCEEEEETCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBC
T ss_pred             CCCeEEEEcCCC---------------CHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcC
Confidence            456999999999               9999999886   579999999999999988764    345799999998764


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .      ...++||+|+....   ..+...+++.+.+.|+|||.+++...
T Consensus       111 ~------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          111 P------FENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             S------SCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C------CCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence            1      12579999997643   34567899999999999999998764

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.09  E-value=1.7e-10  Score=94.69  Aligned_cols=101  Identities=19%  Similarity=0.214  Sum_probs=75.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..++...+++.+++++|+++ +.+.           .++++..+|..+
T Consensus        21 ~~~~~vLd~G~G~---------------G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~   73 (180)
T 1ej0_A           21 KPGMTVVDLGAAP---------------GGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRD   73 (180)
T ss_dssp             CTTCEEEEESCTT---------------CHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTS
T ss_pred             CCCCeEEEeCCCC---------------CHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEccccc
Confidence            4567999999999               999999999865568999999999 6432           469999999876


Q ss_pred             hH--HHHhhcCCCCceeEEEEcCCcc---ch-----------HHHHHHHHhcccCCeEEEEecc
Q 022597          198 SL--KALILNGEASSYDFAFVDAEKR---MY-----------QEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l--~~l~~~~~~~~fD~vfiD~~~~---~~-----------~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..  ..+....+.++||+|+.+....   ..           ..+++.+.++|+|||.+++...
T Consensus        74 ~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           74 ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            42  1111000247899999976421   11           6889999999999999997543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.09  E-value=3.2e-10  Score=94.96  Aligned_cols=105  Identities=11%  Similarity=0.152  Sum_probs=82.8

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      ..++..+  ..++.+|||+|||+               |..+..++..   +.+++++|+++++++.+++++.      +
T Consensus        37 ~~~l~~~--~~~~~~vLdiG~G~---------------G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~------~   90 (195)
T 3cgg_A           37 ARLIDAM--APRGAKILDAGCGQ---------------GRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP------E   90 (195)
T ss_dssp             HHHHHHH--SCTTCEEEEETCTT---------------THHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT------T
T ss_pred             HHHHHHh--ccCCCeEEEECCCC---------------CHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC------C
Confidence            4455555  33667999999999               9999998886   5799999999999999988763      4


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEec
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ++++.+|..+..  +    ..++||+|+....      ......+++.+.+.|+|||.+++..
T Consensus        91 ~~~~~~d~~~~~--~----~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A           91 ARWVVGDLSVDQ--I----SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             SEEEECCTTTSC--C----CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CcEEEcccccCC--C----CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            889999987531  1    1478999998732      2345789999999999999999864

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.09  E-value=4.4e-10  Score=104.16  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=76.9

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-----cEEEEEcc
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGL  194 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-----~v~~~~gd  194 (294)
                      +.+|||||||+               |.....++..  ..++|+|+|+++++++.|++.++..+...     ++++..+|
T Consensus        49 ~~~VLDlGCG~---------------G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d  111 (302)
T 2vdw_A           49 KRKVLAIDFGN---------------GADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQET  111 (302)
T ss_dssp             CCEEEETTCTT---------------TTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECC
T ss_pred             CCeEEEEecCC---------------cHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhh
Confidence            56999999999               8654444442  24799999999999999999998776532     26777777


Q ss_pred             hhhhH--HHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSL--KALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l--~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .....  ..+......++||+|+.-..      ..+...+++.+.++|||||++++...
T Consensus       112 ~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          112 IRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             TTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            62110  11211112579999975321      23457999999999999999998755

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.09  E-value=2.8e-10  Score=96.03  Aligned_cols=104  Identities=14%  Similarity=0.178  Sum_probs=79.4

Q ss_pred             CCHHHHHHHHHHHhh--hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQI--LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       103 v~~~~~~lL~~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      -.|+...++.. +..  .++.+|||+|||+               |..+..++...    +|+++|+|+++++.      
T Consensus         6 P~~~~~~l~~~-l~~~~~~~~~vLD~GcG~---------------G~~~~~l~~~~----~v~gvD~s~~~~~~------   59 (170)
T 3q87_B            6 PGEDTYTLMDA-LEREGLEMKIVLDLGTST---------------GVITEQLRKRN----TVVSTDLNIRALES------   59 (170)
T ss_dssp             CCHHHHHHHHH-HHHHTCCSCEEEEETCTT---------------CHHHHHHTTTS----EEEEEESCHHHHHT------
T ss_pred             cCccHHHHHHH-HHhhcCCCCeEEEeccCc---------------cHHHHHHHhcC----cEEEEECCHHHHhc------
Confidence            35666666666 444  5677999999999               99999888753    99999999999876      


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc------------chHHHHHHHHhcccCCeEEEEec
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~------------~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                          ..+++++.+|+.+.++       .++||+|+.+.+-.            ....+++.+.+.+ |||.+++-.
T Consensus        60 ----~~~~~~~~~d~~~~~~-------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           60 ----HRGGNLVRADLLCSIN-------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             ----CSSSCEEECSTTTTBC-------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             ----ccCCeEEECChhhhcc-------cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence                3568999999976321       37899999986521            2356777777777 999998754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.08  E-value=4.2e-11  Score=105.95  Aligned_cols=110  Identities=14%  Similarity=0.116  Sum_probs=82.0

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC-------------
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-------------  184 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl-------------  184 (294)
                      .++.+|||+|||+               |..+..++....  .+|+++|+++++++.|+++++..+.             
T Consensus        55 ~~~~~vLDlGcG~---------------G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  117 (265)
T 2i62_A           55 VKGELLIDIGSGP---------------TIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCD  117 (265)
T ss_dssp             CCEEEEEEESCTT---------------CCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred             cCCCEEEEECCCc---------------cHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhc
Confidence            3456999999999               988887776422  4899999999999999998865431             


Q ss_pred             ---------------CCcE-EEEEcchhhhHHHHhhcCCCCceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEE
Q 022597          185 ---------------SHKV-KIKHGLAADSLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       185 ---------------~~~v-~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-------~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                                     ..++ ++..+|+.+.....  ....++||+|+....       ...+..+++.+.++|+|||.++
T Consensus       118 ~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li  195 (265)
T 2i62_A          118 LEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLG--GVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLV  195 (265)
T ss_dssp             HTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTT--TCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             ccccccchHHHHHHhhhhheeEEEeeeccCCCCC--ccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEE
Confidence                           1137 89999987642210  001278999997543       2367889999999999999999


Q ss_pred             Eeccc
Q 022597          242 IDNVL  246 (294)
Q Consensus       242 id~vl  246 (294)
                      +...+
T Consensus       196 ~~~~~  200 (265)
T 2i62_A          196 MVDAL  200 (265)
T ss_dssp             EEEES
T ss_pred             EEecC
Confidence            97754

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.08  E-value=2.9e-09  Score=97.13  Aligned_cols=113  Identities=9%  Similarity=0.028  Sum_probs=82.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +..+|||||||+            +-+|..+..+.+..+ +++|+++|+|+.+++.|++++..   ..+++++.+|..+.
T Consensus        77 ~~~~vLDlGcG~------------pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~  140 (274)
T 2qe6_A           77 GISQFLDLGSGL------------PTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDP  140 (274)
T ss_dssp             CCCEEEEETCCS------------CCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCH
T ss_pred             CCCEEEEECCCC------------CCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCc
Confidence            457999999997            333555555555444 78999999999999999998843   35799999999763


Q ss_pred             HHH-----HhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          199 LKA-----LILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       199 l~~-----l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      ...     +....+.++||+|++..-     ......+++.+.+.|+|||++++.+...
T Consensus       141 ~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          141 EYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             HHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             hhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            210     001112358999987542     2247889999999999999999987653

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.08  E-value=8.8e-11  Score=105.18  Aligned_cols=110  Identities=20%  Similarity=0.140  Sum_probs=84.2

Q ss_pred             CHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 022597          104 SPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG  183 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g  183 (294)
                      .+...+.+...+...++.+|||||||+               |..+..++.   ++.+|+++|+++.+++.|++..    
T Consensus        19 ~~~~~~~l~~~~~~~~~~~vLDiGcG~---------------G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~----   76 (261)
T 3ege_A           19 DIRIVNAIINLLNLPKGSVIADIGAGT---------------GGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP----   76 (261)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTT---------------SHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT----
T ss_pred             cHHHHHHHHHHhCCCCCCEEEEEcCcc---------------cHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc----
Confidence            344444455555555678999999999               999999886   3689999999999888766543    


Q ss_pred             CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          184 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       184 l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                         +++++.+|+.+..  +    +.++||+|+....   ..+...+++.+.+.|+ ||.+++.+.
T Consensus        77 ---~~~~~~~d~~~~~--~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           77 ---QVEWFTGYAENLA--L----PDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             ---TEEEECCCTTSCC--S----CTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             ---CCEEEECchhhCC--C----CCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence               6999999986531  1    2578999998653   3567899999999999 997666554

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.08  E-value=4.9e-10  Score=98.63  Aligned_cols=105  Identities=10%  Similarity=0.059  Sum_probs=81.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..++...+   +|+++|+++.+++.|++++.    ..+++++.+|+.+
T Consensus        55 ~~~~~vLD~GcG~---------------G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~  112 (245)
T 3ggd_A           55 NPELPLIDFACGN---------------GTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT----AANISYRLLDGLV  112 (245)
T ss_dssp             CTTSCEEEETCTT---------------SHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTC
T ss_pred             CCCCeEEEEcCCC---------------CHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc----ccCceEEECcccc
Confidence            4557999999999               999999999754   89999999999999998772    2379999999977


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ........ ...+||+|+....     ..+...+++.+.+.|+|||.+++-+.
T Consensus       113 ~~~~~~~~-~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  164 (245)
T 3ggd_A          113 PEQAAQIH-SEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL  164 (245)
T ss_dssp             HHHHHHHH-HHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             cccccccc-cccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            43221000 0135999987642     34678999999999999998776554

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.07  E-value=8.8e-10  Score=95.93  Aligned_cols=98  Identities=15%  Similarity=0.140  Sum_probs=79.4

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..++...   .+++++|+++++++.|++++      .+++++.+|+.+
T Consensus        39 ~~~~~vLdiG~G~---------------G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~   94 (239)
T 3bxo_A           39 PEASSLLDVACGT---------------GTHLEHFTKEF---GDTAGLELSEDMLTHARKRL------PDATLHQGDMRD   94 (239)
T ss_dssp             TTCCEEEEETCTT---------------SHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTT
T ss_pred             CCCCeEEEecccC---------------CHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHH
Confidence            3567999999999               99999999875   38999999999999998864      358999999875


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-------~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ..  .     .++||+|+....       ......+++.+.+.|+|||.++++...
T Consensus        95 ~~--~-----~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (239)
T 3bxo_A           95 FR--L-----GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW  143 (239)
T ss_dssp             CC--C-----SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             cc--c-----CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence            31  1     468999994321       245678999999999999999998643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.06  E-value=1.8e-10  Score=99.01  Aligned_cols=95  Identities=17%  Similarity=0.161  Sum_probs=76.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++.+|||+|||+               |..+..+      +. +++++|+++++++.|++++      .+++++.+|+.+
T Consensus        36 ~~~~vLdiG~G~---------------G~~~~~l------~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~   88 (211)
T 2gs9_A           36 PGESLLEVGAGT---------------GYWLRRL------PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEA   88 (211)
T ss_dssp             CCSEEEEETCTT---------------CHHHHHC------CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTS
T ss_pred             CCCeEEEECCCC---------------CHhHHhC------CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEccccc
Confidence            456999999999               9877766      34 8999999999999998876      468899998865


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ..      ...++||+|+....   ..+...+++.+.+.|+|||.+++....
T Consensus        89 ~~------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A           89 LP------FPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             CC------SCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CC------CCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecC
Confidence            31      12468999997643   345788999999999999999987653

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.06  E-value=9.6e-10  Score=106.63  Aligned_cols=121  Identities=14%  Similarity=0.215  Sum_probs=91.6

Q ss_pred             CCCCHH-HHHHHHHHHhhh---CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597          101 MQVSPD-QAQLLAMLVQIL---GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK  176 (294)
Q Consensus       101 ~~v~~~-~~~lL~~l~~~~---~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~  176 (294)
                      .+..+. ...++..++...   ++.+|||+|||+               |..++.++..   ..+|+++|+++++++.|+
T Consensus       264 ~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~---------------G~~~~~la~~---~~~V~gvD~s~~al~~A~  325 (433)
T 1uwv_A          264 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM---------------GNFTLPLATQ---AASVVGVEGVPALVEKGQ  325 (433)
T ss_dssp             CCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTT---------------TTTHHHHHTT---SSEEEEEESCHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCC---------------CHHHHHHHhh---CCEEEEEeCCHHHHHHHH
Confidence            344444 444555554433   557999999999               9999999876   579999999999999999


Q ss_pred             HHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          177 KYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       177 ~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++++.+|+. +++++.+|+.+.++.+..  ..++||+|++|++.....+.++.+.+ ++|++++++.
T Consensus       326 ~n~~~~~~~-~v~f~~~d~~~~l~~~~~--~~~~fD~Vv~dPPr~g~~~~~~~l~~-~~p~~ivyvs  388 (433)
T 1uwv_A          326 QNARLNGLQ-NVTFYHENLEEDVTKQPW--AKNGFDKVLLDPARAGAAGVMQQIIK-LEPIRIVYVS  388 (433)
T ss_dssp             HHHHHTTCC-SEEEEECCTTSCCSSSGG--GTTCCSEEEECCCTTCCHHHHHHHHH-HCCSEEEEEE
T ss_pred             HHHHHcCCC-ceEEEECCHHHHhhhhhh--hcCCCCEEEECCCCccHHHHHHHHHh-cCCCeEEEEE
Confidence            999999987 799999999875432110  13689999999986655566666554 7899988764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.06  E-value=1.5e-10  Score=98.87  Aligned_cols=102  Identities=9%  Similarity=0.092  Sum_probs=81.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..++...+  .+++++|+++.+++.|+++.+.   ..+++++.+|+.+
T Consensus        41 ~~~~~vLdiGcG~---------------G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~  100 (215)
T 2pxx_A           41 RPEDRILVLGCGN---------------SALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRK  100 (215)
T ss_dssp             CTTCCEEEETCTT---------------CSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTS
T ss_pred             CCCCeEEEECCCC---------------cHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhc
Confidence            3566999999999               999999988633  3899999999999999998764   2479999999876


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC------------------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAE------------------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~------------------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      . + +    ..++||+|+....                  ......+++.+.+.|+|||.+++-..
T Consensus       101 ~-~-~----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          101 L-D-F----PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             C-C-S----CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             C-C-C----CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            4 1 1    2478999997532                  12457889999999999999998654

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.05  E-value=2.5e-10  Score=104.07  Aligned_cols=108  Identities=18%  Similarity=0.139  Sum_probs=79.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHH-------CCC----CcEEEEEeCCh--------------HHHH
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALV-------LPE----SGCLVACERDA--------------RSLE  173 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~-------~~~----~~~v~~id~~~--------------~~~~  173 (294)
                      ++.+|||||+|+               |+.++++++.       .|.    ..+++++|.+|              +..+
T Consensus        60 ~~~~ILEiGfGt---------------G~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~  124 (257)
T 2qy6_A           60 PLFVVAESGFGT---------------GLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAP  124 (257)
T ss_dssp             SEEEEEESCCTT---------------SHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHH
T ss_pred             CCCEEEEECCCh---------------HHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHH
Confidence            345999999999               9999998776       342    25899999987              3344


Q ss_pred             HHHHHHHHh----------CCC---CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----c-chHHHHHHHHhcc
Q 022597          174 VAKKYYERA----------GVS---HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----R-MYQEYFELLLQLI  234 (294)
Q Consensus       174 ~A~~~~~~~----------gl~---~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----~-~~~~~~~~~~~lL  234 (294)
                      .|++.++..          ++.   .+++++.||+.+.++.+.... ..+||+||+|+..     + .+.++|+.+.++|
T Consensus       125 ~a~~l~~~w~~~~~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~-~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L  203 (257)
T 2qy6_A          125 WAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINELISQLDDSL-NQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLA  203 (257)
T ss_dssp             HHHHHHHTCCCSCSEEEEEEEC--CEEEEEEESCHHHHGGGSCGGG-TTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHE
T ss_pred             HHHHHHHhccccccchhheeccCCceEEEEEECcHHHHHhhccccc-CCeEEEEEECCCCcccChhhcCHHHHHHHHHHc
Confidence            667776641          122   468899999999877652110 1379999999742     1 2688999999999


Q ss_pred             cCCeEEEE
Q 022597          235 RVGGIIVI  242 (294)
Q Consensus       235 kpgG~ivi  242 (294)
                      +|||+++.
T Consensus       204 ~pGG~l~t  211 (257)
T 2qy6_A          204 RPGGTLAT  211 (257)
T ss_dssp             EEEEEEEE
T ss_pred             CCCcEEEE
Confidence            99999985

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.05  E-value=3.3e-10  Score=103.61  Aligned_cols=101  Identities=15%  Similarity=0.086  Sum_probs=74.0

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      +...++.+|||+|||+               |..++.++..   +.+|+++|+|+++++.|+++++..    .+.....+
T Consensus        41 l~l~~g~~VLDlGcGt---------------G~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~   98 (261)
T 3iv6_A           41 ENIVPGSTVAVIGAST---------------RFLIEKALER---GASVTVFDFSQRMCDDLAEALADR----CVTIDLLD   98 (261)
T ss_dssp             TTCCTTCEEEEECTTC---------------HHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS----CCEEEECC
T ss_pred             cCCCCcCEEEEEeCcc---------------hHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc----cceeeeee
Confidence            3445667999999999               9999999875   579999999999999999987654    12222222


Q ss_pred             hhh-hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEe
Q 022597          195 AAD-SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~-~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ... ....+     .++||+|+++..     .......++.+.++| |||.+++.
T Consensus        99 ~~~~~~~~~-----~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A           99 ITAEIPKEL-----AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             TTSCCCGGG-----TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             ccccccccc-----CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence            211 00111     478999998754     334567888999999 99999986

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.01  E-value=8.2e-10  Score=98.63  Aligned_cols=96  Identities=16%  Similarity=0.168  Sum_probs=76.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||||||+               |..+..++..   +.+++++|+++++++.|+++..     ..  ++.+|+.+.
T Consensus        54 ~~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~  108 (260)
T 2avn_A           54 NPCRVLDLGGGT---------------GKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDL  108 (260)
T ss_dssp             SCCEEEEETCTT---------------CHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSC
T ss_pred             CCCeEEEeCCCc---------------CHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHC
Confidence            567999999999               9999988875   5799999999999999988754     12  778887653


Q ss_pred             HHHHhhcCCCCceeEEEEcCC----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAE----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .  +    ..++||+|+....    ..+...+++.+.+.|+|||.+++...
T Consensus       109 ~--~----~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          109 P--F----PSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             C--S----CTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C--C----CCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence            1  1    2578999998643    24478899999999999999998643

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.01  E-value=2e-10  Score=103.38  Aligned_cols=109  Identities=16%  Similarity=0.096  Sum_probs=76.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--C------------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V------------  184 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l------------  184 (294)
                      ++.+|||||||+               |..+..++..  ...+|+++|+|+.+++.|+++++...  +            
T Consensus        55 ~g~~vLDiGCG~---------------G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~  117 (263)
T 2a14_A           55 QGDTLIDIGSGP---------------TIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL  117 (263)
T ss_dssp             CEEEEEESSCTT---------------CCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred             CCceEEEeCCCc---------------cHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhc
Confidence            456999999999               8665544432  12479999999999999999876532  1            


Q ss_pred             --------------CCcEE-EEEcchhhhHHHHhhcCCCCceeEEEEcC-------CccchHHHHHHHHhcccCCeEEEE
Q 022597          185 --------------SHKVK-IKHGLAADSLKALILNGEASSYDFAFVDA-------EKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       185 --------------~~~v~-~~~gda~~~l~~l~~~~~~~~fD~vfiD~-------~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                                    ..+++ ++.+|..+..+ + .....++||+|+...       ..+++...++.+.++|||||.+++
T Consensus       118 ~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~-~-~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~  195 (263)
T 2a14_A          118 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNP-L-APAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVT  195 (263)
T ss_dssp             TTCGGGHHHHHHHHHHHEEEEEECCTTSSST-T-TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CCCCcchhhHHHHHHhhhheEEeccccCCCC-C-CccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                          11344 78888765311 0 001146899998752       235677889999999999999999


Q ss_pred             eccc
Q 022597          243 DNVL  246 (294)
Q Consensus       243 d~vl  246 (294)
                      ...+
T Consensus       196 ~~~~  199 (263)
T 2a14_A          196 TVTL  199 (263)
T ss_dssp             EEES
T ss_pred             EEee
Confidence            8654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.00  E-value=4.9e-10  Score=100.13  Aligned_cols=108  Identities=19%  Similarity=0.211  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHhh--hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          105 PDQAQLLAMLVQI--LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       105 ~~~~~lL~~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +....+...+...  .++.+|||+|||+               |..+..++...+ +.+|+++|+++++++.|+++.   
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~---------------G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~---  129 (269)
T 1p91_A           69 PLRDAIVAQLRERLDDKATAVLDIGCGE---------------GYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY---  129 (269)
T ss_dssp             HHHHHHHHHHHHHSCTTCCEEEEETCTT---------------STTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEECCCC---------------CHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC---
Confidence            4444444444443  3567999999999               999999999774 679999999999999998764   


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                         .++++..+|+.+..  +    ..++||+|+.....    ..++.+.++|+|||.+++..
T Consensus       130 ---~~~~~~~~d~~~~~--~----~~~~fD~v~~~~~~----~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          130 ---PQVTFCVASSHRLP--F----SDTSMDAIIRIYAP----CKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             ---TTSEEEECCTTSCS--B----CTTCEEEEEEESCC----CCHHHHHHHEEEEEEEEEEE
T ss_pred             ---CCcEEEEcchhhCC--C----CCCceeEEEEeCCh----hhHHHHHHhcCCCcEEEEEE
Confidence               35789999886531  1    14789999975443    34778899999999998854

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.00  E-value=2e-09  Score=98.76  Aligned_cols=95  Identities=18%  Similarity=0.178  Sum_probs=77.4

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      +..++...+.+...+...++.+|||||||+               |..+..++..   +.+|+++|+|+++++.++++++
T Consensus        10 fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~---------------G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~   71 (285)
T 1zq9_A           10 ILKNPLIINSIIDKAALRPTDVVLEVGPGT---------------GNMTVKLLEK---AKKVVACELDPRLVAELHKRVQ   71 (285)
T ss_dssp             EECCHHHHHHHHHHTCCCTTCEEEEECCTT---------------STTHHHHHHH---SSEEEEEESCHHHHHHHHHHHT
T ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCcc---------------cHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHH
Confidence            345676666666666666778999999999               9999999987   4699999999999999999998


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR  221 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~  221 (294)
                      ..+..++++++++|+.+..        ..+||.|+.+.+..
T Consensus        72 ~~~~~~~v~~~~~D~~~~~--------~~~fD~vv~nlpy~  104 (285)
T 1zq9_A           72 GTPVASKLQVLVGDVLKTD--------LPFFDTCVANLPYQ  104 (285)
T ss_dssp             TSTTGGGEEEEESCTTTSC--------CCCCSEEEEECCGG
T ss_pred             hcCCCCceEEEEcceeccc--------chhhcEEEEecCcc
Confidence            7777678999999997541        24799999987643

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.99  E-value=2.5e-09  Score=100.12  Aligned_cols=117  Identities=12%  Similarity=0.038  Sum_probs=91.1

Q ss_pred             CCHHHHHHHHHHHhh----hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCC----cEEEEEeCChHHHHH
Q 022597          103 VSPDQAQLLAMLVQI----LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPES----GCLVACERDARSLEV  174 (294)
Q Consensus       103 v~~~~~~lL~~l~~~----~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~----~~v~~id~~~~~~~~  174 (294)
                      .++....++..++..    .++.+|||+|||+               |..++.++..++..    .+++|+|+++.+++.
T Consensus       110 TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGs---------------G~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~  174 (344)
T 2f8l_A          110 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGT---------------ANLLTTVINQLELKGDVDVHASGVDVDDLLISL  174 (344)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTT---------------SHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCc---------------cHHHHHHHHHHHHhcCCCceEEEEECCHHHHHH
Confidence            344556666666542    2456999999999               99999998887533    789999999999999


Q ss_pred             HHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc---------------------chHHHHHHHHhc
Q 022597          175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR---------------------MYQEYFELLLQL  233 (294)
Q Consensus       175 A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~---------------------~~~~~~~~~~~l  233 (294)
                      |+.++...|+  +++++++|+.+..       ..++||+|+.+++-.                     .+..+++.+.+.
T Consensus       175 a~~n~~~~g~--~~~i~~~D~l~~~-------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~  245 (344)
T 2f8l_A          175 ALVGADLQRQ--KMTLLHQDGLANL-------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY  245 (344)
T ss_dssp             HHHHHHHHTC--CCEEEESCTTSCC-------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT
T ss_pred             HHHHHHhCCC--CceEEECCCCCcc-------ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHH
Confidence            9999998887  5899999986531       147899999997611                     123689999999


Q ss_pred             ccCCeEEEEe
Q 022597          234 IRVGGIIVID  243 (294)
Q Consensus       234 LkpgG~ivid  243 (294)
                      |+|||.+++-
T Consensus       246 Lk~gG~~~~v  255 (344)
T 2f8l_A          246 TKPGGYLFFL  255 (344)
T ss_dssp             EEEEEEEEEE
T ss_pred             hCCCCEEEEE
Confidence            9999988763

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.98  E-value=6.8e-10  Score=100.65  Aligned_cols=111  Identities=11%  Similarity=0.044  Sum_probs=75.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh----------------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA----------------  182 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~----------------  182 (294)
                      ++.+|||||||+               |..+..++.  ..+.+|+++|+++++++.|+++++..                
T Consensus        71 ~~~~vLDiGcG~---------------G~~~~l~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~  133 (289)
T 2g72_A           71 SGRTLIDIGSGP---------------TVYQLLSAC--SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLI  133 (289)
T ss_dssp             CCSEEEEETCTT---------------CCGGGTTGG--GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCc---------------ChHHHHhhc--cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHh
Confidence            567999999999               883332222  22579999999999999999876431                


Q ss_pred             -CCC------------CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEEE
Q 022597          183 -GVS------------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       183 -gl~------------~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-------~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                       |..            ..++++.+|+.+.++.-....+.++||+|+....       ..++...++.+.++|||||.+++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~  213 (289)
T 2g72_A          134 EGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL  213 (289)
T ss_dssp             HCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             cCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence             111            0256677777652210000012467999987643       23578899999999999999999


Q ss_pred             eccc
Q 022597          243 DNVL  246 (294)
Q Consensus       243 d~vl  246 (294)
                      ...+
T Consensus       214 ~~~~  217 (289)
T 2g72_A          214 IGAL  217 (289)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7543

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.94  E-value=2.8e-09  Score=99.19  Aligned_cols=105  Identities=15%  Similarity=0.221  Sum_probs=86.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--C--CCCcEEEEEc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--G--VSHKVKIKHG  193 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--g--l~~~v~~~~g  193 (294)
                      .++++||-||.|.               |.....+++.. +..+|+.||+|++.++.+++++...  |  -+.|++++.+
T Consensus        82 p~pk~VLIiGgGd---------------G~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~  145 (294)
T 3o4f_A           82 GHAKHVLIIGGGD---------------GAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVID  145 (294)
T ss_dssp             SCCCEEEEESCTT---------------SHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred             CCCCeEEEECCCc---------------hHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEec
Confidence            4678999999999               88887777753 3679999999999999999998642  2  1468999999


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |+.+.++..     .++||+|++|...+       .-.++++.+.+.|+|||+++..
T Consensus       146 Dg~~~l~~~-----~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          146 DGVNFVNQT-----SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             CTTTTTSCS-----SCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             hHHHHHhhc-----cccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence            999887543     57899999996521       2468999999999999999974

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.93  E-value=3e-09  Score=99.52  Aligned_cols=105  Identities=12%  Similarity=0.081  Sum_probs=81.6

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..+..+|||||||+               |..+..+++..| +.+++++|+ ++.+.  +++.+..++.++++++.+|+.
T Consensus       182 ~~~~~~vLDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~  242 (348)
T 3lst_A          182 FPATGTVADVGGGR---------------GGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL  242 (348)
T ss_dssp             CCSSEEEEEETCTT---------------SHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT
T ss_pred             ccCCceEEEECCcc---------------CHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC
Confidence            34567999999999               999999999887 778999999 44444  444555677789999999986


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      +.   +     . +||+|++..-     ......+++.+.+.|+|||.+++.+..+..
T Consensus       243 ~~---~-----p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~  291 (348)
T 3lst_A          243 RE---V-----P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE  291 (348)
T ss_dssp             TC---C-----C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred             CC---C-----C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            32   1     3 8999987532     233478999999999999999987765544

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.93  E-value=8.8e-10  Score=100.28  Aligned_cols=91  Identities=19%  Similarity=0.239  Sum_probs=74.1

Q ss_pred             HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCCh-------HHHHHHHHHHHH
Q 022597          109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDA-------RSLEVAKKYYER  181 (294)
Q Consensus       109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~-------~~~~~A~~~~~~  181 (294)
                      +++...+...++.+|||+|||+               |..++.++..   +++|+++|+++       ++++.|+++.+.
T Consensus        73 ~~l~~a~~~~~~~~VLDlgcG~---------------G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~  134 (258)
T 2r6z_A           73 ELIAKAVNHTAHPTVWDATAGL---------------GRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPET  134 (258)
T ss_dssp             CHHHHHTTGGGCCCEEETTCTT---------------CHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHhCcCCcCeEEEeeCcc---------------CHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHh
Confidence            3444444445567999999999               9999999984   57999999999       999999999998


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      +|+.++++++++|+.+.++.+...  .++||+|++|+.
T Consensus       135 ~~~~~ri~~~~~d~~~~l~~~~~~--~~~fD~V~~dP~  170 (258)
T 2r6z_A          135 QDTAARINLHFGNAAEQMPALVKT--QGKPDIVYLDPM  170 (258)
T ss_dssp             HHHHTTEEEEESCHHHHHHHHHHH--HCCCSEEEECCC
T ss_pred             hCCccCeEEEECCHHHHHHhhhcc--CCCccEEEECCC
Confidence            888778999999999887655210  168999999974

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.92  E-value=4.1e-09  Score=89.77  Aligned_cols=98  Identities=14%  Similarity=0.172  Sum_probs=71.0

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++.+|||+|||+               |..+..++...++ +++|+++|+++..           .. .+++++++|+.+
T Consensus        22 ~~~~vLDlGcG~---------------G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~   74 (201)
T 2plw_A           22 KNKIILDIGCYP---------------GSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGK   74 (201)
T ss_dssp             TTEEEEEESCTT---------------CHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTT
T ss_pred             CCCEEEEeCCCC---------------CHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccc
Confidence            456999999999               9999999998864 6899999999941           12 468999999865


Q ss_pred             hH-------------------HHHhhcCCCCceeEEEEcCCcc-------ch-------HHHHHHHHhcccCCeEEEEe
Q 022597          198 SL-------------------KALILNGEASSYDFAFVDAEKR-------MY-------QEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l-------------------~~l~~~~~~~~fD~vfiD~~~~-------~~-------~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..                   ..+....+.++||+|+.+....       +.       ...++.+.++|+|||.+++.
T Consensus        75 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~  153 (201)
T 2plw_A           75 DNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK  153 (201)
T ss_dssp             TSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            42                   0110001246899999875311       11       23677888999999999984

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.92  E-value=1.1e-08  Score=96.44  Aligned_cols=105  Identities=11%  Similarity=0.113  Sum_probs=83.3

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..+..+|+|||||+               |..+..+++..| +.+++..|+ |+.++.|+++++..+ .++|+++.+|..
T Consensus       177 ~~~~~~v~DvGgG~---------------G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~  238 (353)
T 4a6d_A          177 LSVFPLMCDLGGGA---------------GALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFF  238 (353)
T ss_dssp             GGGCSEEEEETCTT---------------SHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTT
T ss_pred             cccCCeEEeeCCCC---------------CHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccc
Confidence            45667999999999               999999999987 778999997 889999999887555 679999999986


Q ss_pred             hhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          197 DSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      +.        +...+|++++-.     +.+....+++.+.+.|+|||.+++.+.+.
T Consensus       239 ~~--------~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~  286 (353)
T 4a6d_A          239 KD--------PLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLL  286 (353)
T ss_dssp             TS--------CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred             cC--------CCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence            42        135689998642     23345688999999999999888766544

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.92  E-value=1.9e-09  Score=93.77  Aligned_cols=98  Identities=23%  Similarity=0.355  Sum_probs=76.2

Q ss_pred             HHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          113 MLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       113 ~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      .+....++.+|||+|||+               |..+..++..       +++|+++++++.++++        +++++.
T Consensus        41 ~l~~~~~~~~vLDiG~G~---------------G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~   90 (219)
T 1vlm_A           41 AVKCLLPEGRGVEIGVGT---------------GRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLK   90 (219)
T ss_dssp             HHHHHCCSSCEEEETCTT---------------STTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEE
T ss_pred             HHHHhCCCCcEEEeCCCC---------------CHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEE
Confidence            344444577999999999               9887776542       9999999999998876        478899


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +|+.+..  +    ..++||+|+....   ..+...+++.+.+.|+|||.+++....
T Consensus        91 ~d~~~~~--~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A           91 GTAENLP--L----KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             CBTTBCC--S----CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccccCC--C----CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence            9886531  1    2468999998754   345688999999999999999997653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.90  E-value=1.3e-09  Score=93.70  Aligned_cols=97  Identities=15%  Similarity=0.089  Sum_probs=75.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..++..   +.+++++|+++++++.++++.        .++..+|+.+
T Consensus        31 ~~~~~vLdiG~G~---------------G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~   84 (230)
T 3cc8_A           31 KEWKEVLDIGCSS---------------GALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIET   84 (230)
T ss_dssp             TTCSEEEEETCTT---------------SHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTT
T ss_pred             cCCCcEEEeCCCC---------------CHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhh
Confidence            3567999999999               9999998876   389999999999998887654        2678888764


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEec
Q 022597          198 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ....+    ..++||+|+....   ..+...+++.+.+.|+|||.+++..
T Consensus        85 ~~~~~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           85 MDMPY----EEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             CCCCS----CTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             cCCCC----CCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence            21111    2478999998643   2345789999999999999999864

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.90  E-value=3.8e-09  Score=97.61  Aligned_cols=91  Identities=15%  Similarity=0.241  Sum_probs=68.8

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +++...+.+...+...++.+|||+|||+               |..+..++..   +++|+++|+++++++.|+++++..
T Consensus        26 ~~~~i~~~i~~~~~~~~~~~VLDiG~G~---------------G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~   87 (299)
T 2h1r_A           26 KNPGILDKIIYAAKIKSSDIVLEIGCGT---------------GNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYE   87 (299)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEECCTT---------------STTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEEcCcC---------------cHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHc
Confidence            4555444444555555667999999999               9999988874   579999999999999999999888


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK  220 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~  220 (294)
                      ++ ++++++.+|+.+..        .++||.|+.+.+.
T Consensus        88 ~~-~~v~~~~~D~~~~~--------~~~~D~Vv~n~py  116 (299)
T 2h1r_A           88 GY-NNLEVYEGDAIKTV--------FPKFDVCTANIPY  116 (299)
T ss_dssp             TC-CCEEC----CCSSC--------CCCCSEEEEECCG
T ss_pred             CC-CceEEEECchhhCC--------cccCCEEEEcCCc
Confidence            87 57999999987541        3589999998763

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.89  E-value=8e-09  Score=95.35  Aligned_cols=114  Identities=13%  Similarity=0.060  Sum_probs=78.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcH--HHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGY--SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~--~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+..++||||||+               |.  .+..+++...++++|+++|.|+.+++.|++.+...+ ..+++++++|.
T Consensus        77 ~g~~q~LDLGcG~---------------pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~  140 (277)
T 3giw_A           77 AGIRQFLDIGTGI---------------PTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADM  140 (277)
T ss_dssp             SCCCEEEEESCCS---------------CCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCT
T ss_pred             cCCCEEEEeCCCC---------------CcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecc
Confidence            4557999999996               32  345566554458999999999999999999887543 34799999999


Q ss_pred             hhhHHHHhhcCCCCcee-----EEEEcCC------ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          196 ADSLKALILNGEASSYD-----FAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD-----~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      .+.-..+......+.||     .|++.+-      ......+++.+.+.|+|||++++.....
T Consensus       141 ~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          141 LDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             TCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             cChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            87532110000013455     3555432      1124689999999999999999987643

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.89  E-value=1.7e-09  Score=103.27  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=74.6

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||||||+               |..+..++..   +.+|+++|+++++++.|++.    ++.....+...+..+
T Consensus       106 ~~~~~VLDiGcG~---------------G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~  163 (416)
T 4e2x_A          106 GPDPFIVEIGCND---------------GIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATAD  163 (416)
T ss_dssp             SSSCEEEEETCTT---------------TTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHH
T ss_pred             CCCCEEEEecCCC---------------CHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHh
Confidence            3566999999999               9998888874   56999999999999988875    444322222222222


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .++..     .++||+|+....   ..+...+++.+.++|+|||++++...
T Consensus       164 ~l~~~-----~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~  209 (416)
T 4e2x_A          164 DVRRT-----EGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP  209 (416)
T ss_dssp             HHHHH-----HCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             hcccC-----CCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence            23221     479999997654   34678999999999999999999743

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.88  E-value=2e-09  Score=102.27  Aligned_cols=111  Identities=15%  Similarity=0.229  Sum_probs=84.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      +.-.++...+.+..++...++.+|||+|||+               |..++.+++..+...+++|+|+++++++.|    
T Consensus        20 ~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGt---------------G~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----   80 (421)
T 2ih2_A           20 RVETPPEVVDFMVSLAEAPRGGRVLEPACAH---------------GPFLRAFREAHGTAYRFVGVEIDPKALDLP----   80 (421)
T ss_dssp             -CCCCHHHHHHHHHHCCCCTTCEEEEETCTT---------------CHHHHHHHHHHCSCSEEEEEESCTTTCCCC----
T ss_pred             eEeCCHHHHHHHHHhhccCCCCEEEECCCCC---------------hHHHHHHHHHhCCCCeEEEEECCHHHHHhC----
Confidence            3345566666666666544566999999999               999999998764468999999999998776    


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--------------c------------------chHHHH
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--------------R------------------MYQEYF  227 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--------------~------------------~~~~~~  227 (294)
                            ++++++++|+.+...       .++||+|+.+++-              .                  .+..++
T Consensus        81 ------~~~~~~~~D~~~~~~-------~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl  147 (421)
T 2ih2_A           81 ------PWAEGILADFLLWEP-------GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFL  147 (421)
T ss_dssp             ------TTEEEEESCGGGCCC-------SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHH
T ss_pred             ------CCCcEEeCChhhcCc-------cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHH
Confidence                  479999999976421       4689999997541              0                  123678


Q ss_pred             HHHHhcccCCeEEEE
Q 022597          228 ELLLQLIRVGGIIVI  242 (294)
Q Consensus       228 ~~~~~lLkpgG~ivi  242 (294)
                      +.+.++|+|||.+++
T Consensus       148 ~~~~~~Lk~~G~~~~  162 (421)
T 2ih2_A          148 EKAVRLLKPGGVLVF  162 (421)
T ss_dssp             HHHHHHEEEEEEEEE
T ss_pred             HHHHHHhCCCCEEEE
Confidence            889999999998776

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.88  E-value=4e-09  Score=91.18  Aligned_cols=95  Identities=16%  Similarity=0.208  Sum_probs=69.0

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |..+..+++.   +++|+++|+++..           .. .+++++++|+.+
T Consensus        24 ~~g~~VLDlG~G~---------------G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~   73 (191)
T 3dou_A           24 RKGDAVIEIGSSP---------------GGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFK   73 (191)
T ss_dssp             CTTCEEEEESCTT---------------CHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTS
T ss_pred             CCCCEEEEEeecC---------------CHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccC
Confidence            3567999999999               9999988875   6899999999851           12 469999999865


Q ss_pred             hH--H---H-HhhcCCCCceeEEEEcCCcc--------------chHHHHHHHHhcccCCeEEEEe
Q 022597          198 SL--K---A-LILNGEASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l--~---~-l~~~~~~~~fD~vfiD~~~~--------------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..  .   . +...+ .++||+|+.|....              .....++.+.++|+|||.+++.
T Consensus        74 ~~~~~~~~~~~~~~~-~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           74 ETIFDDIDRALREEG-IEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             SSHHHHHHHHHHHHT-CSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHhhccc-CCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            31  1   1 10001 14899999986421              1245677778999999999975

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.87  E-value=6.6e-09  Score=99.99  Aligned_cols=119  Identities=14%  Similarity=0.164  Sum_probs=88.1

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-----------------------
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-----------------------  158 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-----------------------  158 (294)
                      .+.+..+..|..++...+...+||.+||+               |...+..+.....                       
T Consensus       184 pl~e~lAa~ll~l~~~~~~~~vlDp~CGS---------------Gt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~  248 (393)
T 3k0b_A          184 PIKETMAAALVLLTSWHPDRPFYDPVCGS---------------GTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWA  248 (393)
T ss_dssp             SCCHHHHHHHHHHSCCCTTSCEEETTCTT---------------SHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCCCCeEEEcCCCC---------------CHHHHHHHHHhcCcCCCccccchhhccccCCHHHHH
Confidence            35566666666666666778999999999               9888877764321                       


Q ss_pred             --------------CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----
Q 022597          159 --------------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----  220 (294)
Q Consensus       159 --------------~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----  220 (294)
                                    ..+|+++|+|+++++.|+++++.+|+.+++++.++|+.+...       .++||+|+.|++-    
T Consensus       249 ~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~-------~~~fD~Iv~NPPYg~rl  321 (393)
T 3k0b_A          249 DARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT-------EDEYGVVVANPPYGERL  321 (393)
T ss_dssp             HHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC-------CCCSCEEEECCCCCCSH
T ss_pred             HHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC-------CCCCCEEEECCCCcccc
Confidence                          156999999999999999999999999899999999987521       3689999999872    


Q ss_pred             ---cchHHHHHHHHhcccC--CeEEEE
Q 022597          221 ---RMYQEYFELLLQLIRV--GGIIVI  242 (294)
Q Consensus       221 ---~~~~~~~~~~~~lLkp--gG~ivi  242 (294)
                         .....++..+.+.|++  ||.+.+
T Consensus       322 ~~~~~l~~ly~~lg~~lk~~~g~~~~i  348 (393)
T 3k0b_A          322 EDEEAVRQLYREMGIVYKRMPTWSVYV  348 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred             CCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence               2334445544444444  665544

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.85  E-value=6.9e-09  Score=99.48  Aligned_cols=117  Identities=15%  Similarity=0.128  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-------------------------
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-------------------------  157 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-------------------------  157 (294)
                      +.+..+..|..+....+..++||.|||+               |..++.++....                         
T Consensus       179 l~e~lAa~ll~~~~~~~~~~vlDp~CGS---------------Gt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~  243 (385)
T 3ldu_A          179 IRETLAAGLIYLTPWKAGRVLVDPMCGS---------------GTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWD  243 (385)
T ss_dssp             CCHHHHHHHHHTSCCCTTSCEEETTCTT---------------CHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHH
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEEcCCCC---------------CHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHH
Confidence            3444555555555555677999999999               998888776532                         


Q ss_pred             ------------CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----
Q 022597          158 ------------ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----  220 (294)
Q Consensus       158 ------------~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----  220 (294)
                                  ...+|+|+|+|+++++.|+++++.+|+.+.+++.++|+.+...       .++||+|+.|++-     
T Consensus       244 ~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~-------~~~~D~Iv~NPPyg~rl~  316 (385)
T 3ldu_A          244 VRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS-------EDEFGFIITNPPYGERLE  316 (385)
T ss_dssp             HHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC-------SCBSCEEEECCCCCCSHH
T ss_pred             HHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc-------CCCCcEEEECCCCcCccC
Confidence                        1257999999999999999999999999899999999987532       4689999999872     


Q ss_pred             --cchHHHHHHHHhcccC--CeEEE
Q 022597          221 --RMYQEYFELLLQLIRV--GGIIV  241 (294)
Q Consensus       221 --~~~~~~~~~~~~lLkp--gG~iv  241 (294)
                        .....++..+.+.|++  ||.+.
T Consensus       317 ~~~~l~~ly~~lg~~lk~~~g~~~~  341 (385)
T 3ldu_A          317 DKDSVKQLYKELGYAFRKLKNWSYY  341 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred             CHHHHHHHHHHHHHHHhhCCCCEEE
Confidence              2234455555445544  55544

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.84  E-value=1.3e-08  Score=97.62  Aligned_cols=118  Identities=13%  Similarity=0.112  Sum_probs=88.6

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC------------------------
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE------------------------  158 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~------------------------  158 (294)
                      +.+..+..|..+....+...++|.+||+               |...+..+.....                        
T Consensus       178 l~e~LAaall~l~~~~~~~~llDp~CGS---------------Gt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~  242 (384)
T 3ldg_A          178 IKENMAAAIILLSNWFPDKPFVDPTCGS---------------GTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTR  242 (384)
T ss_dssp             CCHHHHHHHHHHTTCCTTSCEEETTCTT---------------SHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHH
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEeCCcC---------------CHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHH
Confidence            4556666666666666778999999999               9888877764321                        


Q ss_pred             -------------CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-----
Q 022597          159 -------------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----  220 (294)
Q Consensus       159 -------------~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-----  220 (294)
                                   ..+++++|+|+++++.|+++++.+|+.+++++.++|+.+...       .++||+|+.|++-     
T Consensus       243 ~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~-------~~~fD~Iv~NPPYG~rl~  315 (384)
T 3ldg_A          243 VRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT-------NKINGVLISNPPYGERLL  315 (384)
T ss_dssp             HHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC-------CCCSCEEEECCCCTTTTS
T ss_pred             HHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc-------cCCcCEEEECCchhhccC
Confidence                         156999999999999999999999999999999999987521       3589999999872     


Q ss_pred             --cchHHHHHHHHhcccC--CeEEEE
Q 022597          221 --RMYQEYFELLLQLIRV--GGIIVI  242 (294)
Q Consensus       221 --~~~~~~~~~~~~lLkp--gG~ivi  242 (294)
                        .....++..+.+.|++  ||.+.+
T Consensus       316 ~~~~l~~ly~~lg~~lk~~~g~~~~i  341 (384)
T 3ldg_A          316 DDKAVDILYNEMGETFAPLKTWSQFI  341 (384)
T ss_dssp             CHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             CHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence              2344555555555554  665543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.84  E-value=9.7e-09  Score=86.92  Aligned_cols=100  Identities=10%  Similarity=0.090  Sum_probs=71.7

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCC--------cEEEEEeCChHHHHHHHHHHHHhCCCCcEE
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPES--------GCLVACERDARSLEVAKKYYERAGVSHKVK  189 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~--------~~v~~id~~~~~~~~A~~~~~~~gl~~~v~  189 (294)
                      .++.+|||+|||+               |..+..++...+..        ++|+++|+++..           +. .+++
T Consensus        21 ~~~~~vLDlGcG~---------------G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~   73 (196)
T 2nyu_A           21 RPGLRVLDCGAAP---------------GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGAT   73 (196)
T ss_dssp             CTTCEEEEETCCS---------------CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCE
T ss_pred             CCCCEEEEeCCCC---------------CHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCe
Confidence            3467999999999               99999999987643        899999999941           22 3588


Q ss_pred             EE-EcchhhhHH--HHhhcCCCCceeEEEEcCCcc-------c-------hHHHHHHHHhcccCCeEEEEec
Q 022597          190 IK-HGLAADSLK--ALILNGEASSYDFAFVDAEKR-------M-------YQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       190 ~~-~gda~~~l~--~l~~~~~~~~fD~vfiD~~~~-------~-------~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ++ .+|..+...  .+....+.++||+|+.+....       +       ....++.+.+.|+|||.+++..
T Consensus        74 ~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           74 FLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             EECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            88 888754321  111111135899999875211       1       1477888999999999999864

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.84  E-value=2e-08  Score=93.48  Aligned_cols=87  Identities=16%  Similarity=0.093  Sum_probs=71.3

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++.+|||+|||+               |..+..++...+ +++|+++|.|+++++.|+++++..|  ++++++++|+
T Consensus        23 ~~~~g~~vLD~g~G~---------------G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~   84 (301)
T 1m6y_A           23 KPEDEKIILDCTVGE---------------GGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSY   84 (301)
T ss_dssp             CCCTTCEEEETTCTT---------------SHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCG
T ss_pred             CCCCCCEEEEEeCCc---------------CHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCH
Confidence            344567999999999               999999999887 7899999999999999999999887  5899999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCcc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKR  221 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~  221 (294)
                      .+....+...+ ..+||.|++|.+..
T Consensus        85 ~~l~~~l~~~g-~~~~D~Vl~D~gvS  109 (301)
T 1m6y_A           85 READFLLKTLG-IEKVDGILMDLGVS  109 (301)
T ss_dssp             GGHHHHHHHTT-CSCEEEEEEECSCC
T ss_pred             HHHHHHHHhcC-CCCCCEEEEcCccc
Confidence            76533232111 25899999998744

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.83  E-value=1.1e-08  Score=94.11  Aligned_cols=105  Identities=18%  Similarity=0.234  Sum_probs=75.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcH----HHHHHHHHCCC---CcEEEEEeCChHHHHHHHHHHH-----------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGY----SSLAIALVLPE---SGCLVACERDARSLEVAKKYYE-----------  180 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~----~sl~la~~~~~---~~~v~~id~~~~~~~~A~~~~~-----------  180 (294)
                      ++.+|+|+||||               |.    .++.++...+.   +.+|+|+|+|+++++.|++..-           
T Consensus       105 ~~~rIld~GCgT---------------Gee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~  169 (274)
T 1af7_A          105 GEYRVWSAAAST---------------GEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQ  169 (274)
T ss_dssp             SCEEEEESCCTT---------------THHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHH
T ss_pred             CCcEEEEeeccC---------------ChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHH
Confidence            346999999999               97    44555555442   3599999999999999998641           


Q ss_pred             ---H---------hC-------CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccC
Q 022597          181 ---R---------AG-------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRV  236 (294)
Q Consensus       181 ---~---------~g-------l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkp  236 (294)
                         +         .|       +.++|+|.++|..+. + +.   ..++||+||+-.-     .+...+.++.+.+.|+|
T Consensus       170 ~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~-~-~~---~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p  244 (274)
T 1af7_A          170 QLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEK-Q-YN---VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP  244 (274)
T ss_dssp             HHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCS-S-CC---CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE
T ss_pred             HHHHHhhccccCCCCceeechhhcccCeEEecccCCC-C-CC---cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC
Confidence               0         01       113699999998752 0 10   0368999998532     34457889999999999


Q ss_pred             CeEEEEe
Q 022597          237 GGIIVID  243 (294)
Q Consensus       237 gG~ivid  243 (294)
                      ||++++.
T Consensus       245 gG~L~lg  251 (274)
T 1af7_A          245 DGLLFAG  251 (274)
T ss_dssp             EEEEEEC
T ss_pred             CcEEEEE
Confidence            9999984

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.82  E-value=4.6e-08  Score=93.29  Aligned_cols=120  Identities=13%  Similarity=0.090  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          106 DQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       106 ~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      ...++...++...++.+|||+++|.               |.-|+.++.... ++.|+++|+++..++..++++++.|..
T Consensus       135 ~aS~l~~~~L~~~pg~~VLD~CAaP---------------GGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~  198 (359)
T 4fzv_A          135 AASLLPVLALGLQPGDIVLDLCAAP---------------GGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPE  198 (359)
T ss_dssp             GGGHHHHHHHCCCTTEEEEESSCTT---------------CHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCc---------------cHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhh
Confidence            4456667777778888999999999               988999988654 678999999999999999999998864


Q ss_pred             -----CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc---------------------------hHHHHHHHHhc
Q 022597          186 -----HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM---------------------------YQEYFELLLQL  233 (294)
Q Consensus       186 -----~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~---------------------------~~~~~~~~~~l  233 (294)
                           .++.+...|+....+..     .++||.|++|++-..                           ..++++.+.++
T Consensus       199 ~~~~~~~v~v~~~D~~~~~~~~-----~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~  273 (359)
T 4fzv_A          199 EIRDGNQVRVTSWDGRKWGELE-----GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLA  273 (359)
T ss_dssp             TTTTSSSEEEECCCGGGHHHHS-----TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHT
T ss_pred             hhccCCceEEEeCchhhcchhc-----cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhc
Confidence                 47899999987654432     578999999976110                           24677788899


Q ss_pred             ccCCeEEEEeccc
Q 022597          234 IRVGGIIVIDNVL  246 (294)
Q Consensus       234 LkpgG~ivid~vl  246 (294)
                      |||||+||....-
T Consensus       274 lkpGG~LVYsTCS  286 (359)
T 4fzv_A          274 TKPGGHVVYSTCS  286 (359)
T ss_dssp             EEEEEEEEEEESC
T ss_pred             CCCCcEEEEEeCC
Confidence            9999999988774

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.81  E-value=1.4e-08  Score=93.37  Aligned_cols=156  Identities=8%  Similarity=0.059  Sum_probs=102.1

Q ss_pred             HHHHHHHHhh-hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC
Q 022597          108 AQLLAMLVQI-LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH  186 (294)
Q Consensus       108 ~~lL~~l~~~-~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~  186 (294)
                      ..+...+... ..+.+|||||||+               |-.++.++... +..+++++|+|+.+++.+++++..+|+. 
T Consensus       120 D~fY~~i~~~i~~p~~VLDLGCG~---------------GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~-  182 (281)
T 3lcv_B          120 DEFYRELFRHLPRPNTLRDLACGL---------------NPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVP-  182 (281)
T ss_dssp             HHHHHHHGGGSCCCSEEEETTCTT---------------GGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHhccCCCceeeeeccCc---------------cHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC-
Confidence            3333333333 4578999999999               88888877754 4899999999999999999999999986 


Q ss_pred             cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcch
Q 022597          187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKT  261 (294)
Q Consensus       187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~  261 (294)
                       .++.+.|.....       ..++||++++.--     ...-...| .+.+.|+++|++|--++   ..+.++.  ....
T Consensus       183 -~~~~v~D~~~~~-------p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~---ksl~Grs--~gm~  248 (281)
T 3lcv_B          183 -HRTNVADLLEDR-------LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPT---KSLGQRS--KGMF  248 (281)
T ss_dssp             -EEEEECCTTTSC-------CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEEC---C---------CHH
T ss_pred             -ceEEEeeecccC-------CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccc---hhhcCCC--cchh
Confidence             677888876432       2689999987533     12222445 68899999999997766   1122111  1111


Q ss_pred             HHHHHHHHHhhhCCCeEEEEeecCCceEEEEEC
Q 022597          262 ISIRNFNKNLMEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       262 ~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                      ....+.++....+.+....-+-+++-+....+|
T Consensus       249 ~~Y~~~~e~~~~~~g~~~~~~~~~nEl~y~i~k  281 (281)
T 3lcv_B          249 QNYSQSFESQARERSCRIQRLEIGNELIYVIQK  281 (281)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEETTEEEEEEC-
T ss_pred             hHHHHHHHHHHHhcCCceeeeeecCeeEEEecC
Confidence            122233333333344466677778887776654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.79  E-value=8.8e-09  Score=99.89  Aligned_cols=77  Identities=16%  Similarity=0.153  Sum_probs=67.6

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--CCCCcEEEEEcchhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GVSHKVKIKHGLAAD  197 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--gl~~~v~~~~gda~~  197 (294)
                      +.+|||+|||+               |..++.++..   +.+|+++|+|+++++.|+++++.+  |+ ++++++++|+.+
T Consensus        94 g~~VLDLgcG~---------------G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~  154 (410)
T 3ll7_A           94 GTKVVDLTGGL---------------GIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKE  154 (410)
T ss_dssp             TCEEEESSCSS---------------SHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGG
T ss_pred             CCEEEEeCCCc---------------hHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHH
Confidence            68999999999               9999988875   579999999999999999999998  88 689999999998


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC
Q 022597          198 SLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      .++.+.    .++||+||+|++
T Consensus       155 ~L~~~~----~~~fDvV~lDPP  172 (410)
T 3ll7_A          155 YLPLIK----TFHPDYIYVDPA  172 (410)
T ss_dssp             SHHHHH----HHCCSEEEECCE
T ss_pred             hhhhcc----CCCceEEEECCC
Confidence            766531    258999999975

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.79  E-value=2e-09  Score=98.31  Aligned_cols=86  Identities=15%  Similarity=0.216  Sum_probs=68.7

Q ss_pred             HHHHHhhhCC--CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC-----
Q 022597          111 LAMLVQILGA--QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-----  183 (294)
Q Consensus       111 L~~l~~~~~~--~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g-----  183 (294)
                      +...+...++  .+|||+|||+               |..++.++..   +++|+++|.++...+.+++++++++     
T Consensus        78 l~~al~l~~g~~~~VLDl~~G~---------------G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~  139 (258)
T 2oyr_A           78 VAKAVGIKGDYLPDVVDATAGL---------------GRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEI  139 (258)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTT---------------CHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHhcccCCCCCEEEEcCCcC---------------CHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhh
Confidence            3334444455  7999999999               9999999986   5689999999999888888877553     


Q ss_pred             ---CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          184 ---VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       184 ---l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                         +.++++++++|+.+.++.+     .++||+||+|+.
T Consensus       140 ~~~l~~~i~~~~~D~~~~L~~~-----~~~fDvV~lDP~  173 (258)
T 2oyr_A          140 GGWLQERLQLIHASSLTALTDI-----TPRPQVVYLDPM  173 (258)
T ss_dssp             HHHHHHHEEEEESCHHHHSTTC-----SSCCSEEEECCC
T ss_pred             hhhhhcCEEEEECCHHHHHHhC-----cccCCEEEEcCC
Confidence               3357999999998876544     357999999985

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.78  E-value=9.4e-10  Score=98.35  Aligned_cols=97  Identities=13%  Similarity=0.175  Sum_probs=65.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-chhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-da~~  197 (294)
                      ++++||||||||               |..+..+++. + ..+|+++|+++++++.|+++..      ++..... +...
T Consensus        37 ~g~~VLDiGcGt---------------G~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~   93 (232)
T 3opn_A           37 NGKTCLDIGSST---------------GGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRN   93 (232)
T ss_dssp             TTCEEEEETCTT---------------SHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGG
T ss_pred             CCCEEEEEccCC---------------CHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhCc------cccccccceEEE
Confidence            456999999999               9999999886 2 3599999999999998766432      2322211 2211


Q ss_pred             hH-HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          198 SL-KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~l-~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .. ..+    +...||.+..|........+++.+.+.|+|||.+++
T Consensus        94 ~~~~~~----~~~~~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~  135 (232)
T 3opn_A           94 AVLADF----EQGRPSFTSIDVSFISLDLILPPLYEILEKNGEVAA  135 (232)
T ss_dssp             CCGGGC----CSCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEE
T ss_pred             eCHhHc----CcCCCCEEEEEEEhhhHHHHHHHHHHhccCCCEEEE
Confidence            10 001    012356665555444457889999999999999988

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.76  E-value=2.9e-08  Score=93.93  Aligned_cols=99  Identities=15%  Similarity=0.127  Sum_probs=77.7

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+..+|||||||+               |..+..+++..| +.+++++|+ +++++.|++       .++++++.+|..+
T Consensus       202 ~~~~~vlDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~  257 (368)
T 3reo_A          202 EGLTTIVDVGGGT---------------GAVASMIVAKYP-SINAINFDL-PHVIQDAPA-------FSGVEHLGGDMFD  257 (368)
T ss_dssp             TTCSEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTT
T ss_pred             cCCCEEEEeCCCc---------------CHHHHHHHHhCC-CCEEEEEeh-HHHHHhhhh-------cCCCEEEecCCCC
Confidence            3457999999999               999999999986 789999999 888776653       2579999999875


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      .   +     ... |+|++..-     .+....+++.+.+.|+|||.+++.+..++.
T Consensus       258 ~---~-----p~~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  305 (368)
T 3reo_A          258 G---V-----PKG-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP  305 (368)
T ss_dssp             C---C-----CCC-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred             C---C-----CCC-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            2   1     223 99987532     334568899999999999999887776543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.75  E-value=1.8e-08  Score=97.89  Aligned_cols=120  Identities=9%  Similarity=0.075  Sum_probs=94.1

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC------------CCcEEEEEeCC
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP------------ESGCLVACERD  168 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~------------~~~~v~~id~~  168 (294)
                      .-.++...+++..++....+.+|+|.|||+               |...+.++..+.            ...+++|+|++
T Consensus       153 fyTP~~v~~~mv~~l~~~~~~~VlDpacGs---------------G~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~  217 (445)
T 2okc_A          153 YFTPRPLIQAMVDCINPQMGETVCDPACGT---------------GGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT  217 (445)
T ss_dssp             GCCCHHHHHHHHHHHCCCTTCCEEETTCTT---------------CHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC
T ss_pred             ccCcHHHHHHHHHHhCCCCCCEEeccCCCc---------------chHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCC
Confidence            345667778888877766778999999999               988888877642            13679999999


Q ss_pred             hHHHHHHHHHHHHhCCCC-cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc--------------------hHHHH
Q 022597          169 ARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--------------------YQEYF  227 (294)
Q Consensus       169 ~~~~~~A~~~~~~~gl~~-~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~--------------------~~~~~  227 (294)
                      +.+++.|+.++...|+.. .+++.++|+.....       .++||+|+.+++-..                    ...++
T Consensus       218 ~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~-------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl  290 (445)
T 2okc_A          218 PLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP-------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFL  290 (445)
T ss_dssp             HHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC-------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc-------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHH
Confidence            999999999999888863 57899999875311       358999999875110                    24789


Q ss_pred             HHHHhcccCCeEEEE
Q 022597          228 ELLLQLIRVGGIIVI  242 (294)
Q Consensus       228 ~~~~~lLkpgG~ivi  242 (294)
                      +.+.++|+|||.+++
T Consensus       291 ~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          291 QHMMLMLKTGGRAAV  305 (445)
T ss_dssp             HHHHHHEEEEEEEEE
T ss_pred             HHHHHHhccCCEEEE
Confidence            999999999998764

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.74  E-value=3.8e-08  Score=93.05  Aligned_cols=99  Identities=16%  Similarity=0.097  Sum_probs=78.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+..+|||||||+               |..+..+++..| +.+++++|+ +++++.|++       .++++++.+|+.+
T Consensus       200 ~~~~~vlDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~  255 (364)
T 3p9c_A          200 EGLGTLVDVGGGV---------------GATVAAIAAHYP-TIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMFK  255 (364)
T ss_dssp             TTCSEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTT
T ss_pred             cCCCEEEEeCCCC---------------CHHHHHHHHHCC-CCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcCC
Confidence            3467999999999               999999999987 778999999 888776653       2579999999875


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      .   +     ... |+|++..-     .+....+++.+.+.|+|||.+++.+..++.
T Consensus       256 ~---~-----p~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  303 (364)
T 3p9c_A          256 E---V-----PSG-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV  303 (364)
T ss_dssp             C---C-----CCC-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred             C---C-----CCC-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            2   1     223 99987432     344568899999999999999887776543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.73  E-value=6e-08  Score=90.05  Aligned_cols=94  Identities=14%  Similarity=0.097  Sum_probs=75.5

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ..+++...+.+...+...++.+|||||||+               |+.+..++..   +.+|+++|+|+++++.++++++
T Consensus        32 fL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~---------------G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~   93 (295)
T 3gru_A           32 FLIDKNFVNKAVESANLTKDDVVLEIGLGK---------------GILTEELAKN---AKKVYVIEIDKSLEPYANKLKE   93 (295)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEECCCc---------------hHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhc
Confidence            456777766666666667778999999999               9999999987   4799999999999999999987


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR  221 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~  221 (294)
                      .   .++++++++|+.+..  +    +..+||.|+.+.+-.
T Consensus        94 ~---~~~v~vi~gD~l~~~--~----~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A           94 L---YNNIEIIWGDALKVD--L----NKLDFNKVVANLPYQ  125 (295)
T ss_dssp             H---CSSEEEEESCTTTSC--G----GGSCCSEEEEECCGG
T ss_pred             c---CCCeEEEECchhhCC--c----ccCCccEEEEeCccc
Confidence            3   247999999997641  1    134699999887643

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.72  E-value=1e-08  Score=88.40  Aligned_cols=95  Identities=14%  Similarity=0.106  Sum_probs=72.4

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      ..++..+....++.+|||+|||+               |..+..++      .+++++|+++.                +
T Consensus        56 ~~~~~~l~~~~~~~~vLDiG~G~---------------G~~~~~l~------~~v~~~D~s~~----------------~   98 (215)
T 2zfu_A           56 DRIARDLRQRPASLVVADFGCGD---------------CRLASSIR------NPVHCFDLASL----------------D   98 (215)
T ss_dssp             HHHHHHHHTSCTTSCEEEETCTT---------------CHHHHHCC------SCEEEEESSCS----------------S
T ss_pred             HHHHHHHhccCCCCeEEEECCcC---------------CHHHHHhh------ccEEEEeCCCC----------------C
Confidence            34555555555668999999999               98776652      68999999998                3


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +++..+|+.+..      .+.++||+|+....  ..+...+++.+.++|+|||.+++.+.
T Consensus        99 ~~~~~~d~~~~~------~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~  152 (215)
T 2zfu_A           99 PRVTVCDMAQVP------LEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEV  152 (215)
T ss_dssp             TTEEESCTTSCS------CCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ceEEEeccccCC------CCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEc
Confidence            677888886531      12478999987543  35678999999999999999998754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.72  E-value=2e-09  Score=99.99  Aligned_cols=99  Identities=14%  Similarity=0.057  Sum_probs=71.0

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEE-Ecchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK-HGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~-~gda~~  197 (294)
                      .+++|||+||||               |..+..+++.  ..++|+++|+++++++.+.+.      ..++... ..++..
T Consensus        85 ~g~~vLDiGcGT---------------G~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~  141 (291)
T 3hp7_A           85 EDMITIDIGAST---------------GGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRY  141 (291)
T ss_dssp             TTCEEEEETCTT---------------SHHHHHHHHT--TCSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGG
T ss_pred             cccEEEecCCCc---------------cHHHHHHHhC--CCCEEEEEECCHHHHHHHHHh------CcccceecccCcee
Confidence            345999999999               9999988875  246999999999999875332      1244433 234432


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ....   ..+..+||+|++|.........+..+.++|+|||.+++-
T Consensus       142 l~~~---~l~~~~fD~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          142 AEPV---DFTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             CCGG---GCTTCCCSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             cchh---hCCCCCCCEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence            2111   011345999999987666788999999999999999873

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.67  E-value=6.7e-08  Score=87.77  Aligned_cols=95  Identities=12%  Similarity=0.074  Sum_probs=74.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      ...+++...+.+...+...++.+|||||||+               |..+..++..   +++|+++|+|+++++.+++++
T Consensus        10 nFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~---------------G~lt~~La~~---~~~V~avEid~~~~~~~~~~~   71 (255)
T 3tqs_A           10 HFLHDSFVLQKIVSAIHPQKTDTLVEIGPGR---------------GALTDYLLTE---CDNLALVEIDRDLVAFLQKKY   71 (255)
T ss_dssp             CEECCHHHHHHHHHHHCCCTTCEEEEECCTT---------------TTTHHHHTTT---SSEEEEEECCHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHhcCCCCcCEEEEEcccc---------------cHHHHHHHHh---CCEEEEEECCHHHHHHHHHHH
Confidence            3457787777777777777888999999999               9999999875   479999999999999999988


Q ss_pred             HHhCCCCcEEEEEcchhhh-HHHHhhcCCCCceeEEEEcCC
Q 022597          180 ERAGVSHKVKIKHGLAADS-LKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~-l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      +.   .++++++++|+.+. ++.+.   ..++|| |+.+.+
T Consensus        72 ~~---~~~v~~i~~D~~~~~~~~~~---~~~~~~-vv~NlP  105 (255)
T 3tqs_A           72 NQ---QKNITIYQNDALQFDFSSVK---TDKPLR-VVGNLP  105 (255)
T ss_dssp             TT---CTTEEEEESCTTTCCGGGSC---CSSCEE-EEEECC
T ss_pred             hh---CCCcEEEEcchHhCCHHHhc---cCCCeE-EEecCC
Confidence            65   35799999999875 22211   135788 777765

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.67  E-value=2.7e-07  Score=83.90  Aligned_cols=142  Identities=12%  Similarity=0.039  Sum_probs=92.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+.+|||||||+               |-.++.+.    ++.+++++|+|+.+++.+++++...|.  +.++..+|...
T Consensus       104 ~~p~~VLDlGCG~---------------gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~--~~~~~v~D~~~  162 (253)
T 3frh_A          104 ETPRRVLDIACGL---------------NPLALYER----GIASVWGCDIHQGLGDVITPFAREKDW--DFTFALQDVLC  162 (253)
T ss_dssp             CCCSEEEEETCTT---------------THHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTC--EEEEEECCTTT
T ss_pred             CCCCeEEEecCCc---------------cHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCC--CceEEEeeccc
Confidence            4678999999999               88777766    478999999999999999999998884  57888888865


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHH-HHHHHh
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIR-NFNKNL  271 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir-~f~~~l  271 (294)
                      ...       .++||+|++---     ...-...+ .+.+.|+++|++|--.+   ..+.++..  ....... .|.+.+
T Consensus       163 ~~~-------~~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPt---ksl~Gr~~--gm~~~Y~~~~e~~~  229 (253)
T 3frh_A          163 APP-------AEAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFPT---RSLGGRGK--GMEANYAAWFEGGL  229 (253)
T ss_dssp             SCC-------CCBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEEC---C-------------CHHHHHHHHS
T ss_pred             CCC-------CCCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcCh---HHhcCCCc--chhhHHHHHHHHHh
Confidence            422       579999976521     11222333 66679999999987663   22222110  0001112 233333


Q ss_pred             hhCCCeEEEEeecCCceEEEEEC
Q 022597          272 MEDERVSISMVPIGDGMTICQKR  294 (294)
Q Consensus       272 ~~~~~~~~~~lp~gdGl~i~~k~  294 (294)
                       ......+--.-+|+-+....+|
T Consensus       230 -~~~~~~~~~~~~~nEl~~~i~~  251 (253)
T 3frh_A          230 -PAEFEIEDKKTIGTELIYLIKK  251 (253)
T ss_dssp             -CTTEEEEEEEEETTEEEEEEEE
T ss_pred             -hccchhhhheecCceEEEEEec
Confidence             4444555666777777666553

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.65  E-value=6.5e-08  Score=92.85  Aligned_cols=146  Identities=14%  Similarity=0.131  Sum_probs=101.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--C-C----CCcEEEE
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--G-V----SHKVKIK  191 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--g-l----~~~v~~~  191 (294)
                      ++++||-||.|.               |.....+++. + ..+|+.||+|++.++.+++++...  + .    .++++++
T Consensus       205 ~pkrVLIIGgGd---------------G~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vi  267 (381)
T 3c6k_A          205 TGKDVLILGGGD---------------GGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVL  267 (381)
T ss_dssp             TTCEEEEEECTT---------------CHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEE
T ss_pred             CCCeEEEECCCc---------------HHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeee
Confidence            467999999999               8888877764 4 479999999999999999987431  1 1    2469999


Q ss_pred             EcchhhhHHHHhhcCCCCceeEEEEcCCc-------------cchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCC
Q 022597          192 HGLAADSLKALILNGEASSYDFAFVDAEK-------------RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVND  258 (294)
Q Consensus       192 ~gda~~~l~~l~~~~~~~~fD~vfiD~~~-------------~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~  258 (294)
                      .+|+.+.++.....  .++||+|++|...             ....++++.+.+.|+|||+++...-    .   +..  
T Consensus       268 i~Da~~fl~~~~~~--~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~----s---~~~--  336 (381)
T 3c6k_A          268 IEDCIPVLKRYAKE--GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN----C---VNL--  336 (381)
T ss_dssp             ESCHHHHHHHHHHH--TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE----E---TTC--
T ss_pred             hHHHHHHHHhhhhc--cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC----C---Ccc--
Confidence            99999998765432  4689999999521             1246889999999999999987521    1   110  


Q ss_pred             cchHHHHHHHHHhhhC-CCeEE----EEeec---CCceEEEEEC
Q 022597          259 AKTISIRNFNKNLMED-ERVSI----SMVPI---GDGMTICQKR  294 (294)
Q Consensus       259 ~~~~~ir~f~~~l~~~-~~~~~----~~lp~---gdGl~i~~k~  294 (294)
                        ...+..+.+.+..- +.+..    +.+|.   ..|..+|-|+
T Consensus       337 --~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          337 --TEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             --HHHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred             --hhHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence              12345555555442 34432    34565   3577777764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.62  E-value=1.5e-07  Score=94.03  Aligned_cols=122  Identities=7%  Similarity=-0.021  Sum_probs=94.2

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-----------------CcEEE
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-----------------SGCLV  163 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-----------------~~~v~  163 (294)
                      .-.++...++|..++....+.+|+|.+||+               |...+.++..+..                 ..+++
T Consensus       151 fyTP~~iv~~mv~~l~p~~~~~VlDPaCGS---------------G~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~  215 (541)
T 2ar0_A          151 YFTPRPLIKTIIHLLKPQPREVVQDPAAGT---------------AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFI  215 (541)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCCEEETTCTT---------------THHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEE
T ss_pred             eeCCHHHHHHHHHHhccCCCCeEecCCccc---------------chHHHHHHHHHHHhhcccccCCHHHHhhhhcceEE
Confidence            345666778877777766677999999999               9888887776532                 13799


Q ss_pred             EEeCChHHHHHHHHHHHHhCCCC----cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-----------------c
Q 022597          164 ACERDARSLEVAKKYYERAGVSH----KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------------M  222 (294)
Q Consensus       164 ~id~~~~~~~~A~~~~~~~gl~~----~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-----------------~  222 (294)
                      |+|+++.+++.|+.++...|+..    ++.+.++|+......-     .++||+|+.+++-.                 .
T Consensus       216 GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~-----~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~  290 (541)
T 2ar0_A          216 GLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGEN-----LPKAHIVATNPPFGSAAGTNITRTFVHPTSNK  290 (541)
T ss_dssp             EEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHT-----SCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH
T ss_pred             EEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCCCccccccc-----ccCCeEEEECCCcccccchhhHhhcCCCCCch
Confidence            99999999999999999888764    3789999987643221     46899999987611                 1


Q ss_pred             hHHHHHHHHhcccCCeEEEE
Q 022597          223 YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       223 ~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +..+++.+.++|+|||.+++
T Consensus       291 ~~~Fl~~~l~~Lk~gGr~a~  310 (541)
T 2ar0_A          291 QLCFMQHIIETLHPGGRAAV  310 (541)
T ss_dssp             HHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCCEEEE
Confidence            34789999999999998664

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.62  E-value=4.5e-08  Score=92.31  Aligned_cols=98  Identities=15%  Similarity=0.120  Sum_probs=77.6

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||||||+               |..+..++...+ +.+++++|+ +++++.|++      . .+++++.+|+.+
T Consensus       208 ~~~~~vLDvG~G~---------------G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~  263 (372)
T 1fp1_D          208 EGISTLVDVGGGS---------------GRNLELIISKYP-LIKGINFDL-PQVIENAPP------L-SGIEHVGGDMFA  263 (372)
T ss_dssp             TTCSEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTTT
T ss_pred             CCCCEEEEeCCCC---------------cHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCccc
Confidence            3467999999999               999999999886 678999999 988877764      1 469999999875


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      .   +     .. ||+|++...     ......+++.+.+.|+|||.+++.+..++
T Consensus       264 ~---~-----~~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~  310 (372)
T 1fp1_D          264 S---V-----PQ-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILP  310 (372)
T ss_dssp             C---C-----CC-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             C---C-----CC-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            2   1     23 999987543     22234899999999999999998776543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.61  E-value=7.4e-08  Score=90.04  Aligned_cols=99  Identities=14%  Similarity=0.153  Sum_probs=78.1

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..+..+|||||||+               |..+..++...| +.+++++|+ +++++.|++      . .+++++.+|..
T Consensus       186 ~~~~~~vlDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~  241 (352)
T 1fp2_A          186 FDGLESIVDVGGGT---------------GTTAKIICETFP-KLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMF  241 (352)
T ss_dssp             HTTCSEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTT
T ss_pred             cccCceEEEeCCCc---------------cHHHHHHHHHCC-CCeEEEeeC-HHHHhhccc------C-CCcEEEecccc
Confidence            34567999999999               999999999886 679999999 998887765      1 35999999986


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccC---CeEEEEecccCC
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRV---GGIIVIDNVLWH  248 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkp---gG~ivid~vl~~  248 (294)
                      +.   +      ..||+|++...     ......+++.+.+.|+|   ||.+++.+..++
T Consensus       242 ~~---~------p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  292 (352)
T 1fp2_A          242 TS---I------PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVID  292 (352)
T ss_dssp             TC---C------CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred             CC---C------CCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecC
Confidence            52   1      24999987532     22334899999999999   999988776544

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.58  E-value=1.3e-07  Score=94.74  Aligned_cols=78  Identities=18%  Similarity=0.277  Sum_probs=65.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||||||+               |..+..||+.   ++.|||||.+++++++|+...++.|.. ++++.++++.+
T Consensus        65 ~~~~~vLDvGCG~---------------G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~  125 (569)
T 4azs_A           65 GRPLNVLDLGCAQ---------------GFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEE  125 (569)
T ss_dssp             TSCCEEEEETCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHH
T ss_pred             CCCCeEEEECCCC---------------cHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHH
Confidence            3567999999999               9999999985   689999999999999999999987754 59999999988


Q ss_pred             hHHHHhhcCCCCceeEEEEcC
Q 022597          198 SLKALILNGEASSYDFAFVDA  218 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~  218 (294)
                      .....    +.++||+|+.-.
T Consensus       126 ~~~~~----~~~~fD~v~~~e  142 (569)
T 4azs_A          126 VIAAL----EEGEFDLAIGLS  142 (569)
T ss_dssp             HHHHC----CTTSCSEEEEES
T ss_pred             Hhhhc----cCCCccEEEECc
Confidence            76543    257899997643

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.57  E-value=7.2e-08  Score=89.37  Aligned_cols=88  Identities=20%  Similarity=0.250  Sum_probs=66.5

Q ss_pred             CCCeEEEEcc------ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEE-E
Q 022597          119 GAQRCIEVGV------YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI-K  191 (294)
Q Consensus       119 ~~~~vLEiG~------g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~-~  191 (294)
                      ++.+|||+||      |+               |.  ..+++..+++++|+++|++++             + +++++ +
T Consensus        63 ~g~~VLDLGcGsg~~~Gp---------------Gs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i  111 (290)
T 2xyq_A           63 YNMRVIHFGAGSDKGVAP---------------GT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTL  111 (290)
T ss_dssp             TTCEEEEESCCCTTSBCH---------------HH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEE
T ss_pred             CCCEEEEeCCCCCCCCCc---------------HH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEE
Confidence            4569999999      44               54  445666766799999999998             1 25888 9


Q ss_pred             EcchhhhHHHHhhcCCCCceeEEEEcCCc--------------cchHHHHHHHHhcccCCeEEEEec
Q 022597          192 HGLAADSLKALILNGEASSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       192 ~gda~~~l~~l~~~~~~~~fD~vfiD~~~--------------~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ++|+.+..  +     .++||+|+.|...              ..+...++.+.+.|+|||.+++..
T Consensus       112 ~gD~~~~~--~-----~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          112 IGDCATVH--T-----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             ESCGGGCC--C-----SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECccccCC--c-----cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            99997631  1     3689999997431              124578899999999999999864

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.55  E-value=2.6e-07  Score=82.72  Aligned_cols=77  Identities=10%  Similarity=0.082  Sum_probs=61.5

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ..+++...+.+...+...++.+|||||||+               |..+..++...   ++|+++|+|+++++.++++++
T Consensus        12 fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~---------------G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~   73 (244)
T 1qam_A           12 FITSKHNIDKIMTNIRLNEHDNIFEIGSGK---------------GHFTLELVQRC---NFVTAIEIDHKLCKTTENKLV   73 (244)
T ss_dssp             BCCCHHHHHHHHTTCCCCTTCEEEEECCTT---------------SHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHhCCCCCCCEEEEEeCCc---------------hHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhc
Confidence            345666555555545555677999999999               99999999873   799999999999999999876


Q ss_pred             HhCCCCcEEEEEcchhhh
Q 022597          181 RAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~  198 (294)
                      .   .++++++++|+.+.
T Consensus        74 ~---~~~v~~~~~D~~~~   88 (244)
T 1qam_A           74 D---HDNFQVLNKDILQF   88 (244)
T ss_dssp             T---CCSEEEECCCGGGC
T ss_pred             c---CCCeEEEEChHHhC
Confidence            4   25799999999764

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.52  E-value=2.4e-07  Score=84.99  Aligned_cols=94  Identities=15%  Similarity=0.043  Sum_probs=74.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      ....+++...+-+...+...++ +|||||||+               |..+..++..   +++|+++|+|+++++.++++
T Consensus        27 QnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~---------------G~lt~~L~~~---~~~V~avEid~~~~~~l~~~   87 (271)
T 3fut_A           27 QNFLVSEAHLRRIVEAARPFTG-PVFEVGPGL---------------GALTRALLEA---GAEVTAIEKDLRLRPVLEET   87 (271)
T ss_dssp             CCEECCHHHHHHHHHHHCCCCS-CEEEECCTT---------------SHHHHHHHHT---TCCEEEEESCGGGHHHHHHH
T ss_pred             ccccCCHHHHHHHHHhcCCCCC-eEEEEeCch---------------HHHHHHHHHc---CCEEEEEECCHHHHHHHHHh
Confidence            3456788877777777777777 999999999               9999999986   37899999999999999988


Q ss_pred             HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc
Q 022597          179 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK  220 (294)
Q Consensus       179 ~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~  220 (294)
                      +.    ..+++++++|+.+.-..-     ...+|.|+.+.+-
T Consensus        88 ~~----~~~v~vi~~D~l~~~~~~-----~~~~~~iv~NlPy  120 (271)
T 3fut_A           88 LS----GLPVRLVFQDALLYPWEE-----VPQGSLLVANLPY  120 (271)
T ss_dssp             TT----TSSEEEEESCGGGSCGGG-----SCTTEEEEEEECS
T ss_pred             cC----CCCEEEEECChhhCChhh-----ccCccEEEecCcc
Confidence            75    257999999997652110     1368999988763

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.52  E-value=2e-07  Score=95.85  Aligned_cols=121  Identities=13%  Similarity=0.097  Sum_probs=87.6

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC---C----------------------
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---P----------------------  157 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~----------------------  157 (294)
                      +.+..+..|..++...+...++|.+||+               |...+..+...   +                      
T Consensus       174 l~e~LAa~ll~~~~~~~~~~llDP~CGS---------------Gt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~  238 (703)
T 3v97_A          174 IKETLAAAIVMRSGWQPGTPLLDPMCGS---------------GTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQ  238 (703)
T ss_dssp             SCHHHHHHHHHHTTCCTTSCEEETTCTT---------------SHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHH
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEecCCCC---------------cHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHH
Confidence            5556666666666656677999999999               98888776642   1                      


Q ss_pred             ----------------CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-
Q 022597          158 ----------------ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-  220 (294)
Q Consensus       158 ----------------~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-  220 (294)
                                      ...+++|+|+|+++++.|++|++.+|+.+.+++.++|+.+....    ...++||+|+.+++- 
T Consensus       239 ~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~----~~~~~~d~Iv~NPPYG  314 (703)
T 3v97_A          239 EVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP----LPKGPYGTVLSNPPYG  314 (703)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS----CTTCCCCEEEECCCCC
T ss_pred             HHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc----cccCCCCEEEeCCCcc
Confidence                            12589999999999999999999999999999999999874211    012389999999872 


Q ss_pred             ------cchHHHHHHH---HhcccCCeEEEE
Q 022597          221 ------RMYQEYFELL---LQLIRVGGIIVI  242 (294)
Q Consensus       221 ------~~~~~~~~~~---~~lLkpgG~ivi  242 (294)
                            ....++++.+   ++.+.|||.+.+
T Consensus       315 ~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          315 ERLDSEPALIALHSLLGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             C---CCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             ccccchhHHHHHHHHHHHHHHhhCCCCeEEE
Confidence                  1233444444   344457887665

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.50  E-value=2.3e-07  Score=94.45  Aligned_cols=101  Identities=12%  Similarity=0.075  Sum_probs=77.6

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHC---CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..|+|||||+               |-.+...+++.   ....+|++||.|+ +...|++..+.+|+.++|++++||.++
T Consensus       359 ~vVldVGaGr---------------GpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~ee  422 (637)
T 4gqb_A          359 QVLMVLGAGR---------------GPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMRE  422 (637)
T ss_dssp             EEEEEESCTT---------------SHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTT
T ss_pred             cEEEEECCCC---------------cHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCccee
Confidence            4799999999               98855444443   2234799999998 677899999999999999999999988


Q ss_pred             hHHHHhhcCCCCceeEEEEcC---C--ccchHHHHHHHHhcccCCeEEEEec
Q 022597          198 SLKALILNGEASSYDFAFVDA---E--KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~---~--~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +-  +     .++.|+|+..-   .  .+...+.+....+.|||||+++=+.
T Consensus       423 v~--L-----PEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiPs~  467 (637)
T 4gqb_A          423 WV--A-----PEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGE  467 (637)
T ss_dssp             CC--C-----SSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEESCE
T ss_pred             cc--C-----CcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcccc
Confidence            62  1     57999998542   1  3345577777788999999987443

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.50  E-value=1.9e-07  Score=86.36  Aligned_cols=96  Identities=23%  Similarity=0.283  Sum_probs=71.4

Q ss_pred             ccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-
Q 022597          141 LSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-  219 (294)
Q Consensus       141 ~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-  219 (294)
                      +|+|||..++.+.. ++.+.+++.||.+++.++..+++++.   .++++++.+|+...++.+...  ..+||+||+|++ 
T Consensus        96 LDlfaGSGaLgiEa-LS~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~--~~~fdLVfiDPPY  169 (283)
T 2oo3_A           96 LSYYPGSPYFAINQ-LRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPP--PEKRGLIFIDPSY  169 (283)
T ss_dssp             CCEEECHHHHHHHH-SCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSC--TTSCEEEEECCCC
T ss_pred             eeEeCCcHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCC--CCCccEEEECCCC
Confidence            33444444444443 33468999999999999999999875   468999999998888776432  357999999997 


Q ss_pred             --ccchHHHHHHHHh--cccCCeEEEE
Q 022597          220 --KRMYQEYFELLLQ--LIRVGGIIVI  242 (294)
Q Consensus       220 --~~~~~~~~~~~~~--lLkpgG~ivi  242 (294)
                        +..|.+.++.+.+  .+.++|++++
T Consensus       170 e~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          170 ERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             CSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence              3468888877764  6778998863

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.48  E-value=7.2e-07  Score=81.99  Aligned_cols=99  Identities=13%  Similarity=0.083  Sum_probs=72.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKY  178 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~  178 (294)
                      ...+++...+.+...+...++.+|||||||+               |..+..++...+. +++|+++|+|+++++.++++
T Consensus        23 ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~---------------G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~   87 (279)
T 3uzu_A           23 NFLVDHGVIDAIVAAIRPERGERMVEIGPGL---------------GALTGPVIARLATPGSPLHAVELDRDLIGRLEQR   87 (279)
T ss_dssp             CEECCHHHHHHHHHHHCCCTTCEEEEECCTT---------------STTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHhcCCCCcCEEEEEcccc---------------HHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh
Confidence            4556777777777777777788999999999               9999999987653 35699999999999999998


Q ss_pred             HHHhCCCCcEEEEEcchhhhH-HHHhhcCCCCceeEEEEcCC
Q 022597          179 YERAGVSHKVKIKHGLAADSL-KALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       179 ~~~~gl~~~v~~~~gda~~~l-~~l~~~~~~~~fD~vfiD~~  219 (294)
                      .     ..+++++++|+.+.- +.+...+ ....+.|+.+.+
T Consensus        88 ~-----~~~v~~i~~D~~~~~~~~~~~~~-~~~~~~vv~NlP  123 (279)
T 3uzu_A           88 F-----GELLELHAGDALTFDFGSIARPG-DEPSLRIIGNLP  123 (279)
T ss_dssp             H-----GGGEEEEESCGGGCCGGGGSCSS-SSCCEEEEEECC
T ss_pred             c-----CCCcEEEECChhcCChhHhcccc-cCCceEEEEccC
Confidence            3     357999999998752 2221000 013356776665

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.48  E-value=3.4e-07  Score=85.71  Aligned_cols=99  Identities=14%  Similarity=0.104  Sum_probs=77.5

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..+..+|||||||+               |..+..+++..| +.+++++|+ +++++.|++      . .+++++.+|..
T Consensus       191 ~~~~~~vlDvG~G~---------------G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~  246 (358)
T 1zg3_A          191 FEGLESLVDVGGGT---------------GGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMF  246 (358)
T ss_dssp             HHTCSEEEEETCTT---------------SHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTT
T ss_pred             ccCCCEEEEECCCc---------------CHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------C-CCcEEEeCccC
Confidence            34678999999999               999999999986 679999999 788876654      2 35999999987


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccC---CeEEEEecccCC
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRV---GGIIVIDNVLWH  248 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkp---gG~ivid~vl~~  248 (294)
                      +.         ..+||+|++...     ......+++.+.+.|+|   ||.+++.+...+
T Consensus       247 ~~---------~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~  297 (358)
T 1zg3_A          247 KS---------IPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISID  297 (358)
T ss_dssp             TC---------CCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred             CC---------CCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence            51         135999987543     22245899999999999   998888666543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.43  E-value=4.6e-09  Score=93.72  Aligned_cols=114  Identities=11%  Similarity=0.144  Sum_probs=79.8

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+++...+.+...+...++.+|||+|||+               |..+..++..   +++|+++|+|+++++.|+++++ 
T Consensus        12 l~~~~~~~~i~~~~~~~~~~~VLDiG~G~---------------G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~-   72 (245)
T 1yub_A           12 LTSEKVLNQIIKQLNLKETDTVYEIGTGK---------------GHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK-   72 (245)
T ss_dssp             CCCTTTHHHHHHHCCCCSSEEEEECSCCC---------------SSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT-
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEEeCCC---------------CHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhc-
Confidence            34454444444445555667999999999               9999999987   3799999999999999888765 


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc----ch----------HHHH----HHHHhcccCCeEEEE
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR----MY----------QEYF----ELLLQLIRVGGIIVI  242 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~----~~----------~~~~----~~~~~lLkpgG~ivi  242 (294)
                        ..++++++++|+.+..  +   ...++| .|+.+.+-.    ..          ..++    +.+.++|+|||.+.+
T Consensus        73 --~~~~v~~~~~D~~~~~--~---~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           73 --LNTRVTLIHQDILQFQ--F---PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             --TCSEEEECCSCCTTTT--C---CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             --cCCceEEEECChhhcC--c---ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence              2457999999997642  1   002578 667665411    11          1223    567788999988765

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.43  E-value=2.2e-08  Score=91.91  Aligned_cols=98  Identities=7%  Similarity=-0.071  Sum_probs=67.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH-HHhCCCCcEEEE--Ecch
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIK--HGLA  195 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~-~~~gl~~~v~~~--~gda  195 (294)
                      ++++|||+|||+               |..+..++..    ++|+++|+++ +...+++.. .......+++++  .+|+
T Consensus        82 ~g~~VLDlGcGt---------------G~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~  141 (276)
T 2wa2_A           82 LKGTVVDLGCGR---------------GSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDV  141 (276)
T ss_dssp             CCEEEEEESCTT---------------CHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCG
T ss_pred             CCCEEEEeccCC---------------CHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcH
Confidence            467999999999               9998888875    6899999998 433222110 001111268888  8898


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC--ccc-----h--HHHHHHHHhcccCCe--EEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE--KRM-----Y--QEYFELLLQLIRVGG--IIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~--~~~-----~--~~~~~~~~~lLkpgG--~ivid~  244 (294)
                      .+.        +.++||+|+.|..  ...     .  ...++.+.+.|+|||  .+++..
T Consensus       142 ~~l--------~~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~  193 (276)
T 2wa2_A          142 TKM--------EPFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV  193 (276)
T ss_dssp             GGC--------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             hhC--------CCCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence            763        1478999999854  101     1  136788889999999  988853

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.41  E-value=6.9e-08  Score=89.75  Aligned_cols=95  Identities=11%  Similarity=0.040  Sum_probs=66.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeC----ChHHHHHHHHHHHHhCCCCcEEEEEc-
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACER----DARSLEVAKKYYERAGVSHKVKIKHG-  193 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~----~~~~~~~A~~~~~~~gl~~~v~~~~g-  193 (294)
                      ++++|||+|||+               |..+..+++.    ++|+++|+    ++.+++.+  ..+..+ .++++++.+ 
T Consensus        82 ~g~~VLDlGcG~---------------G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~~~-~~~v~~~~~~  139 (305)
T 2p41_A           82 PEGKVVDLGCGR---------------GGWSYYCGGL----KNVREVKGLTKGGPGHEEPI--PMSTYG-WNLVRLQSGV  139 (305)
T ss_dssp             CCEEEEEETCTT---------------SHHHHHHHTS----TTEEEEEEECCCSTTSCCCC--CCCSTT-GGGEEEECSC
T ss_pred             CCCEEEEEcCCC---------------CHHHHHHHhc----CCEEEEeccccCchhHHHHH--HhhhcC-CCCeEEEecc
Confidence            457999999999               9999888875    57999999    55432111  011112 246999988 


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCcc--c----hH---HHHHHHHhcccCCeEEEEe
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKR--M----YQ---EYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~--~----~~---~~~~~~~~lLkpgG~ivid  243 (294)
                      |+.+.        +.++||+|+.|....  .    ..   ..++.+.+.|+|||.+++.
T Consensus       140 D~~~l--------~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          140 DVFFI--------PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CTTTS--------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             ccccC--------CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            87643        146899999986421  1    11   4677778999999999985

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.40  E-value=1e-06  Score=90.33  Aligned_cols=108  Identities=10%  Similarity=-0.041  Sum_probs=77.1

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCC------------CCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP------------ESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~------------~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      .+.|+|||||+               |..+...+.+..            ...+|++||.|+......+... .+|+.++
T Consensus       410 ~~VVldVGaGt---------------GpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~-~Ng~~d~  473 (745)
T 3ua3_A          410 TVVIYLLGGGR---------------GPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMN-VRTWKRR  473 (745)
T ss_dssp             EEEEEEESCTT---------------CHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHH-HHTTTTC
T ss_pred             CcEEEEECCCC---------------CHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHH-hcCCCCe
Confidence            45899999999               998754433321            1359999999998775555544 4899999


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEec
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      |++++||.+++-..... ...++.|+|+..--     .+...+.+..+.+.|+|||+++=+.
T Consensus       474 VtVI~gd~eev~lp~~~-~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP~~  534 (745)
T 3ua3_A          474 VTIIESDMRSLPGIAKD-RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQK  534 (745)
T ss_dssp             SEEEESCGGGHHHHHHH-TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEESCE
T ss_pred             EEEEeCchhhccccccc-CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEECCc
Confidence            99999999887321111 12578999986532     2345677777788999999887443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.39  E-value=6.3e-08  Score=88.29  Aligned_cols=99  Identities=11%  Similarity=-0.071  Sum_probs=67.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH-HHhCCCCcEEEE--Ecc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIK--HGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~-~~~gl~~~v~~~--~gd  194 (294)
                      .++.+|||+|||+               |..+..++..    ++|+++|+++ +...+++.. .......+++++  ++|
T Consensus        73 ~~g~~VLDlGcGt---------------G~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D  132 (265)
T 2oxt_A           73 ELTGRVVDLGCGR---------------GGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVD  132 (265)
T ss_dssp             CCCEEEEEESCTT---------------SHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCC
T ss_pred             CCCCEEEEeCcCC---------------CHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccC
Confidence            3567999999999               9988888775    6899999998 432221110 000111268888  888


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCC--ccc-----h--HHHHHHHHhcccCCe--EEEEec
Q 022597          195 AADSLKALILNGEASSYDFAFVDAE--KRM-----Y--QEYFELLLQLIRVGG--IIVIDN  244 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~--~~~-----~--~~~~~~~~~lLkpgG--~ivid~  244 (294)
                      +.+.        +.++||+|+.|..  ...     .  ...++.+.+.|+|||  .+++..
T Consensus       133 ~~~l--------~~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv  185 (265)
T 2oxt_A          133 IHTL--------PVERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV  185 (265)
T ss_dssp             TTTS--------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             HhHC--------CCCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            8763        1478999999854  111     1  136788889999999  998854

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.34  E-value=1.4e-06  Score=78.49  Aligned_cols=114  Identities=17%  Similarity=0.093  Sum_probs=78.5

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ...++...+.+...+...++.+|||||||+               |..+..++.. + ..+|+++|+|+++++.++++  
T Consensus        13 fl~d~~i~~~iv~~~~~~~~~~VLDiG~G~---------------G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~--   73 (249)
T 3ftd_A           13 LLVSEGVLKKIAEELNIEEGNTVVEVGGGT---------------GNLTKVLLQH-P-LKKLYVIELDREMVENLKSI--   73 (249)
T ss_dssp             CEECHHHHHHHHHHTTCCTTCEEEEEESCH---------------HHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS--
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEEcCch---------------HHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc--
Confidence            456777766666666666778999999999               9999988875 2 47999999999999999876  


Q ss_pred             HhCCCCcEEEEEcchhhhH-HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhc--ccCCeEEEE
Q 022597          181 RAGVSHKVKIKHGLAADSL-KALILNGEASSYDFAFVDAEKRMYQEYFELLLQL--IRVGGIIVI  242 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l-~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~l--LkpgG~ivi  242 (294)
                        + ..+++++++|+.+.- +.+     .+.+ .|+.+.+-.-....+..++..  .-+.+++++
T Consensus        74 --~-~~~v~~i~~D~~~~~~~~~-----~~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~  129 (249)
T 3ftd_A           74 --G-DERLEVINEDASKFPFCSL-----GKEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMV  129 (249)
T ss_dssp             --C-CTTEEEECSCTTTCCGGGS-----CSSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             --c-CCCeEEEEcchhhCChhHc-----cCCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence              2 357999999997642 211     1234 677777644334444444432  234455544

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.33  E-value=3.6e-06  Score=87.59  Aligned_cols=145  Identities=10%  Similarity=0.078  Sum_probs=97.2

Q ss_pred             hcCCChHHHHHHHHHHHcC--CCCCCCCCHHHHHHHHHHHhhh------CCCeEEEEccccccccccccccccCCCcHHH
Q 022597           78 RNVREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQIL------GAQRCIEVGVYTVCVSSYSTSILSLFSGYSS  149 (294)
Q Consensus        78 ~~~~~~~~L~~~~~~~~~~--~~~~~~v~~~~~~lL~~l~~~~------~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~s  149 (294)
                      .....++..+.+.+.....  .......++..+.+|..++...      .+.+|+|.|||+               |...
T Consensus       272 ~r~~~DdL~ell~eya~k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGS---------------G~FL  336 (878)
T 3s1s_A          272 RILTGDELAELIHDIATRGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGS---------------GNLL  336 (878)
T ss_dssp             HHCSSHHHHHHHHHHHTTSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTT---------------SHHH
T ss_pred             ccCchHHHHHHHHHHHHHhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCc---------------cHHH
Confidence            3344566666666554322  2345567888899988884321      356999999999               9999


Q ss_pred             HHHHHHCC--CCcEEEEEeCChHHHHHH--HHHHHHhCCCC---cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-
Q 022597          150 LAIALVLP--ESGCLVACERDARSLEVA--KKYYERAGVSH---KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-  221 (294)
Q Consensus       150 l~la~~~~--~~~~v~~id~~~~~~~~A--~~~~~~~gl~~---~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-  221 (294)
                      +.++..++  ...+++|+|+++.+++.|  +.++..+++.+   ...+..+|..+....     ..++||+|+.+++-. 
T Consensus       337 IaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~-----~~~kFDVVIgNPPYg~  411 (878)
T 3s1s_A          337 ATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE-----DFANVSVVVMNPPYVS  411 (878)
T ss_dssp             HHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG-----GGTTEEEEEECCBCCS
T ss_pred             HHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc-----ccCCCCEEEECCCccc
Confidence            98888764  236899999999999999  65555433322   235555555442110     146899999987620 


Q ss_pred             -------------------------------chHHHHHHHHhcccCCeEEEE
Q 022597          222 -------------------------------MYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       222 -------------------------------~~~~~~~~~~~lLkpgG~ivi  242 (294)
                                                     .+..+++.+..+|++||.+.+
T Consensus       412 ~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAf  463 (878)
T 3s1s_A          412 GVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISA  463 (878)
T ss_dssp             SCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEE
T ss_pred             cccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEE
Confidence                                           034577888899999998765

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.31  E-value=5.3e-07  Score=90.22  Aligned_cols=124  Identities=11%  Similarity=0.103  Sum_probs=93.0

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC--------------CcEEE
Q 022597           98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE--------------SGCLV  163 (294)
Q Consensus        98 ~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~--------------~~~v~  163 (294)
                      ..+.-.++...++|..++....+ +|+|.+||+               |...+.++..+..              ..+++
T Consensus       224 ~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGS---------------G~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~  287 (544)
T 3khk_A          224 GGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGS---------------GGFFVSSDKFIEKHANVKHYNASEQKKQISVY  287 (544)
T ss_dssp             STTTCCCHHHHHHHHHHHCCCSE-EEEESSCTT---------------CHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEE
T ss_pred             CCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCc---------------CcHHHHHHHHHHHhccccccchHHHhhhceEE
Confidence            34555778888888888876544 999999999               8777766544320              35899


Q ss_pred             EEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc---------------------
Q 022597          164 ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM---------------------  222 (294)
Q Consensus       164 ~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~---------------------  222 (294)
                      |+|+++.+++.|+.++...|+..++.+.++|+.....     ....+||+|+.+++-..                     
T Consensus       288 G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~-----~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~  362 (544)
T 3khk_A          288 GQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ-----HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGE  362 (544)
T ss_dssp             ECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-----CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--
T ss_pred             EEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-----cccccccEEEECCCcCCccccchhhhhhhhhhcCcccc
Confidence            9999999999999999999988766668888764311     11468999999876110                     


Q ss_pred             -----------hHHHHHHHHhcccCCeEEEE
Q 022597          223 -----------YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       223 -----------~~~~~~~~~~lLkpgG~ivi  242 (294)
                                 ...+++.+..+|+|||.+++
T Consensus       363 ~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai  393 (544)
T 3khk_A          363 KRILTPPTGNANFAWMLHMLYHLAPTGSMAL  393 (544)
T ss_dssp             CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence                       12588999999999998544

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.26  E-value=2.8e-06  Score=84.97  Aligned_cols=141  Identities=11%  Similarity=0.113  Sum_probs=104.3

Q ss_pred             hHHHHHHHHHHH-------cCCCCCCCCCHHHHHHHHHHHh----hhCCCeEEEEccccccccccccccccCCCcHHHHH
Q 022597           83 PEILRQLREETA-------GMRGSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLA  151 (294)
Q Consensus        83 ~~~L~~~~~~~~-------~~~~~~~~v~~~~~~lL~~l~~----~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~  151 (294)
                      .+.+-++.|...       +....+.-.++...++|..++.    ...+.+|+|.+||+               |...+.
T Consensus       174 ~D~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGS---------------G~fLi~  238 (542)
T 3lkd_A          174 GDMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGS---------------GSLLLN  238 (542)
T ss_dssp             TTHHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTT---------------STTGGG
T ss_pred             hhHHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccch---------------hHHHHH
Confidence            366666666532       1223455577888999999887    34567999999999               888888


Q ss_pred             HHHHCC--CCcEEEEEeCChHHHHHHHHHHHHhCCC-CcEEEEEcchhhhH-HHHhhcCCCCceeEEEEcCCcc------
Q 022597          152 IALVLP--ESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSL-KALILNGEASSYDFAFVDAEKR------  221 (294)
Q Consensus       152 la~~~~--~~~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~~~gda~~~l-~~l~~~~~~~~fD~vfiD~~~~------  221 (294)
                      ++..+.  ...+++|+|+++.+++.|+.++...|+. +++.+.++|+...- +.    ....+||+|+.+++-.      
T Consensus       239 a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~----~~~~~fD~IvaNPPf~~~~~~~  314 (542)
T 3lkd_A          239 AKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPT----QEPTNFDGVLMNPPYSAKWSAS  314 (542)
T ss_dssp             HHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCC----SSCCCBSEEEECCCTTCCCCCC
T ss_pred             HHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccc----cccccccEEEecCCcCCccccc
Confidence            887764  2578999999999999999999999986 47899999986530 10    1247899999986610      


Q ss_pred             -------c---h----------HHHHHHHHhccc-CCeEEEE
Q 022597          222 -------M---Y----------QEYFELLLQLIR-VGGIIVI  242 (294)
Q Consensus       222 -------~---~----------~~~~~~~~~lLk-pgG~ivi  242 (294)
                             .   |          ..+++.+..+|+ +||.+.+
T Consensus       315 ~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~  356 (542)
T 3lkd_A          315 SGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI  356 (542)
T ss_dssp             GGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred             hhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence                   0   1          247889999999 9998754

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.24  E-value=3.5e-06  Score=76.20  Aligned_cols=95  Identities=12%  Similarity=-0.113  Sum_probs=66.1

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      .++...+.+...+...++.+|||||||+               |..+. +.. .+ ..+|+++|+|+++++.++++++..
T Consensus         5 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~---------------G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~   66 (252)
T 1qyr_A            5 NDQFVIDSIVSAINPQKGQAMVEIGPGL---------------AALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG   66 (252)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEEECCTT---------------TTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEEECCCC---------------cHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC
Confidence            4555555555555556677999999999               99999 653 21 233999999999999999877542


Q ss_pred             CCCCcEEEEEcchhhh-HHHHhhcCCCCceeEEEEcCCc
Q 022597          183 GVSHKVKIKHGLAADS-LKALILNGEASSYDFAFVDAEK  220 (294)
Q Consensus       183 gl~~~v~~~~gda~~~-l~~l~~~~~~~~fD~vfiD~~~  220 (294)
                         ++++++++|+.+. ++.+...  .+..|.|+.+.+.
T Consensus        67 ---~~v~~i~~D~~~~~~~~~~~~--~~~~~~vvsNlPY  100 (252)
T 1qyr_A           67 ---PKLTIYQQDAMTFNFGELAEK--MGQPLRVFGNLPY  100 (252)
T ss_dssp             ---GGEEEECSCGGGCCHHHHHHH--HTSCEEEEEECCT
T ss_pred             ---CceEEEECchhhCCHHHhhcc--cCCceEEEECCCC
Confidence               4799999999874 3332100  0245778877763

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.10  E-value=9.5e-07  Score=73.77  Aligned_cols=73  Identities=12%  Similarity=0.164  Sum_probs=55.8

Q ss_pred             EeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---c-cchHHHHHHHHhcccCCeEE
Q 022597          165 CERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---K-RMYQEYFELLLQLIRVGGII  240 (294)
Q Consensus       165 id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~-~~~~~~~~~~~~lLkpgG~i  240 (294)
                      +|+++++++.|+++...     +++++.+|+.+....   ....++||+|+....   . .+....++.+.+.|||||.+
T Consensus        26 vD~s~~ml~~a~~~~~~-----~~~~~~~d~~~~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l   97 (176)
T 2ld4_A           26 VEALKGLVDKLQALTGN-----EGRVSVENIKQLLQS---AHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCL   97 (176)
T ss_dssp             HHHHHHHHHHHHHHTTT-----TSEEEEEEGGGGGGG---CCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEE
T ss_pred             eeCCHHHHHHHHHhccc-----CcEEEEechhcCccc---cCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEE
Confidence            99999999999987532     489999998764210   002578999997432   2 56689999999999999999


Q ss_pred             EEecc
Q 022597          241 VIDNV  245 (294)
Q Consensus       241 vid~v  245 (294)
                      ++.+.
T Consensus        98 ~~~~~  102 (176)
T 2ld4_A           98 FLKEP  102 (176)
T ss_dssp             EEEEE
T ss_pred             EEEcc
Confidence            99544

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.05  E-value=1.5e-05  Score=73.68  Aligned_cols=85  Identities=12%  Similarity=0.102  Sum_probs=67.8

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++..+||.+||.               |.-+..|+..   +++|+|+|.|+++++.|++ ++.    +++++++++.
T Consensus        19 ~~~~gg~~VD~T~G~---------------GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f   75 (285)
T 1wg8_A           19 AVRPGGVYVDATLGG---------------AGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNF   75 (285)
T ss_dssp             TCCTTCEEEETTCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCG
T ss_pred             CCCCCCEEEEeCCCC---------------cHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCc
Confidence            344567999999999               9999999886   6899999999999999998 643    5899999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchH
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQ  224 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~  224 (294)
                      .+....+...+ .+++|.|+.|.+...++
T Consensus        76 ~~l~~~L~~~g-~~~vDgIL~DLGvSS~Q  103 (285)
T 1wg8_A           76 RHLKRHLAALG-VERVDGILADLGVSSFH  103 (285)
T ss_dssp             GGHHHHHHHTT-CSCEEEEEEECSCCHHH
T ss_pred             chHHHHHHHcC-CCCcCEEEeCCcccccc
Confidence            87644443333 36899999998865543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.79  E-value=7.9e-05  Score=70.49  Aligned_cols=86  Identities=23%  Similarity=0.141  Sum_probs=69.2

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.++..++|..+|.               |.-+..++..++++++|+++|.++++++.|+ .+    ..+++++++++..
T Consensus        55 i~pggiyVD~TlG~---------------GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~  114 (347)
T 3tka_A           55 IRPDGIYIDGTFGR---------------GGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFS  114 (347)
T ss_dssp             CCTTCEEEESCCTT---------------SHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGG
T ss_pred             CCCCCEEEEeCcCC---------------CHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHH
Confidence            44567999999999               9999999998877899999999999999884 33    2468999999998


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccc
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRM  222 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~  222 (294)
                      +....+...+-.+++|.|+.|.+...
T Consensus       115 ~l~~~L~~~g~~~~vDgILfDLGVSS  140 (347)
T 3tka_A          115 ALGEYVAERDLIGKIDGILLDLGVSS  140 (347)
T ss_dssp             GHHHHHHHTTCTTCEEEEEEECSCCH
T ss_pred             HHHHHHHhcCCCCcccEEEECCccCH
Confidence            87665554443347999999987543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.47  E-value=8.7e-05  Score=75.48  Aligned_cols=109  Identities=17%  Similarity=0.154  Sum_probs=74.8

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHC-------CC----CcEEEEEeCChHHHHHHHH------------
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-------PE----SGCLVACERDARSLEVAKK------------  177 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-------~~----~~~v~~id~~~~~~~~A~~------------  177 (294)
                      -+|+|+|.|+               |+..+.+.+..       |.    ..+++++|..|-..+.+++            
T Consensus        60 ~~i~e~gfG~---------------G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~  124 (689)
T 3pvc_A           60 CIFAETGFGT---------------GLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFA  124 (689)
T ss_dssp             EEEEEECCTT---------------SHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHH
T ss_pred             eEEEEecCch---------------HHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHH
Confidence            4899999999               99998877653       11    1578999995533333332            


Q ss_pred             --HHHHh-----C-----CCC---cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccch------HHHHHHHHhcccC
Q 022597          178 --YYERA-----G-----VSH---KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY------QEYFELLLQLIRV  236 (294)
Q Consensus       178 --~~~~~-----g-----l~~---~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~------~~~~~~~~~lLkp  236 (294)
                        .++..     |     +.+   .+++..||+.+.++.+... ....+|.+|+|+..+.+      .++|..+.++++|
T Consensus       125 ~~l~~~~~~~~~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~-~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~  203 (689)
T 3pvc_A          125 EQLRAQWPLPLAGCHRILLADGAITLDLWFGDVNTLLPTLDDS-LNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRP  203 (689)
T ss_dssp             HHHHHTCCCCCSEEEEEEETTTTEEEEEEESCHHHHGGGCCGG-GTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEE
T ss_pred             HHHHHhCcccCCCceEEEecCCcEEEEEEccCHHHHHhhcccc-cCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCC
Confidence              22211     1     112   5788999999988765211 03689999999864433      7899999999999


Q ss_pred             CeEEEEecc
Q 022597          237 GGIIVIDNV  245 (294)
Q Consensus       237 gG~ivid~v  245 (294)
                      ||.+.-..+
T Consensus       204 g~~~~t~~~  212 (689)
T 3pvc_A          204 GGTFSTFTA  212 (689)
T ss_dssp             EEEEEESCC
T ss_pred             CCEEEeccC
Confidence            999876544

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.43  E-value=0.00064  Score=67.60  Aligned_cols=148  Identities=11%  Similarity=0.118  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHc----C--CCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC
Q 022597           84 EILRQLREETAG----M--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP  157 (294)
Q Consensus        84 ~~L~~~~~~~~~----~--~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~  157 (294)
                      +.+-.+.|...+    .  ...+.-.++...++|..++....+.+|+|-.|||               |...+.....+.
T Consensus       176 d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGs---------------GgfL~~a~~~l~  240 (530)
T 3ufb_A          176 HTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGT---------------GGFLVEAFEHLE  240 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTT---------------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCc---------------chHHHHHHHHHH
Confidence            456666665321    1  2345567888999999999888888999999999               777666555442


Q ss_pred             C------------CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc----
Q 022597          158 E------------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR----  221 (294)
Q Consensus       158 ~------------~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~----  221 (294)
                      .            ...++|+|+++.....|+-++--.|... -.+.++|.....  ....+...+||+|+.+++-.    
T Consensus       241 ~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~-~~I~~~dtL~~~--~~~~~~~~~fD~Il~NPPf~~~~~  317 (530)
T 3ufb_A          241 RQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY-PRIDPENSLRFP--LREMGDKDRVDVILTNPPFGGEEE  317 (530)
T ss_dssp             TTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC-CEEECSCTTCSC--GGGCCGGGCBSEEEECCCSSCBCC
T ss_pred             HhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc-ccccccccccCc--hhhhcccccceEEEecCCCCcccc
Confidence            1            2469999999999999999998888763 567788875421  11112245799999987621    


Q ss_pred             ---------------chHHHHHHHHhccc-------CCeEEEE---ecccCCC
Q 022597          222 ---------------MYQEYFELLLQLIR-------VGGIIVI---DNVLWHG  249 (294)
Q Consensus       222 ---------------~~~~~~~~~~~lLk-------pgG~ivi---d~vl~~g  249 (294)
                                     ....+++.+...|+       +||.+.+   +.+++.|
T Consensus       318 ~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~  370 (530)
T 3ufb_A          318 KGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSD  370 (530)
T ss_dssp             HHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCC
T ss_pred             ccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhcc
Confidence                           13456777777776       6876543   4455443

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.31  E-value=0.00073  Score=63.03  Aligned_cols=104  Identities=21%  Similarity=0.235  Sum_probs=67.6

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHH---HCCCCc--EEEEEeCCh--------H-HHHHHHHHHHHh----
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIAL---VLPESG--CLVACERDA--------R-SLEVAKKYYERA----  182 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~---~~~~~~--~v~~id~~~--------~-~~~~A~~~~~~~----  182 (294)
                      -+|+|+|-||               |+..+....   ...+..  +++++|.++        + ..+..+..+...    
T Consensus        98 ~~IlE~GFGT---------------GLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~  162 (308)
T 3vyw_A           98 IRILDVGFGL---------------GYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYE  162 (308)
T ss_dssp             EEEEEECCTT---------------SHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEE
T ss_pred             cEEEEeCCCc---------------cHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCcccc
Confidence            3899999999               997654332   223344  457777532        1 223333333332    


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccc-hHHHHHHHHhcccCCeEEEEe
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRM-YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~-~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +-.-.+++..||+.+.++.+.    ..++|.+|.|+-     ++. -.++|+.+.++++|||+++--
T Consensus       163 ~~~v~L~l~~GDa~~~l~~l~----~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTY  225 (308)
T 3vyw_A          163 GERLSLKVLLGDARKRIKEVE----NFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSY  225 (308)
T ss_dssp             CSSEEEEEEESCHHHHGGGCC----SCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEES
T ss_pred             CCcEEEEEEechHHHHHhhhc----ccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEE
Confidence            111135778899998887651    357999999974     233 368999999999999999743

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.28  E-value=0.00056  Score=57.53  Aligned_cols=84  Identities=13%  Similarity=0.084  Sum_probs=56.2

Q ss_pred             CCeEEEEccccccccccccccccCCCcH-HHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~-~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +.++||||||.               |+ .+..|+...  +..|+++|+++..++                ++..|..+-
T Consensus        36 ~~rVlEVG~G~---------------g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P   82 (153)
T 2k4m_A           36 GTRVVEVGAGR---------------FLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSP   82 (153)
T ss_dssp             SSEEEEETCTT---------------CCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSC
T ss_pred             CCcEEEEccCC---------------ChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCC
Confidence            45999999999               94 899988753  578999999998765                777777653


Q ss_pred             HHHHhhcCCCCceeEEE-EcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          199 LKALILNGEASSYDFAF-VDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vf-iD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ...+     -+.||+|+ +.++.+..+.++ .+.+.+  |.-+++--
T Consensus        83 ~~~~-----Y~~~DLIYsirPP~El~~~i~-~lA~~v--~adliI~p  121 (153)
T 2k4m_A           83 RMEI-----YRGAALIYSIRPPAEIHSSLM-RVADAV--GARLIIKP  121 (153)
T ss_dssp             CHHH-----HTTEEEEEEESCCTTTHHHHH-HHHHHH--TCEEEEEC
T ss_pred             cccc-----cCCcCEEEEcCCCHHHHHHHH-HHHHHc--CCCEEEEc
Confidence            3322     25899995 455554444444 444432  34444433

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.10  E-value=0.0014  Score=62.08  Aligned_cols=78  Identities=8%  Similarity=-0.018  Sum_probs=59.7

Q ss_pred             CCCCHHHHHHHHHHHhhhC------CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILG------AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV  174 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~------~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~  174 (294)
                      ..+++...+-+...+.+.+      ...|||||.|.               |..|..|+.... ..+|+++|+|++.+..
T Consensus        34 FL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~---------------G~LT~~Ll~~~~-~~~vvavE~D~~l~~~   97 (353)
T 1i4w_A           34 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGV---------------GIQSAIFYNKYC-PRQYSLLEKRSSLYKF   97 (353)
T ss_dssp             CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTT---------------CHHHHHHHHHHC-CSEEEEECCCHHHHHH
T ss_pred             ccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCC---------------CHHHHHHHhhCC-CCEEEEEecCHHHHHH
Confidence            4456665555555555443      36899999999               999999998642 3689999999999988


Q ss_pred             HHHHHHHhCCCCcEEEEEcchhhh
Q 022597          175 AKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       175 A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .++.+ .   .++++++++|+.++
T Consensus        98 L~~~~-~---~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           98 LNAKF-E---GSPLQILKRDPYDW  117 (353)
T ss_dssp             HHHHT-T---TSSCEEECSCTTCH
T ss_pred             HHHhc-c---CCCEEEEECCccch
Confidence            88766 2   35899999999765

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.06  E-value=0.0021  Score=58.67  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=47.7

Q ss_pred             HHHHHHhh--hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          110 LLAMLVQI--LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       110 lL~~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      ++..++..  .++..|||.+||+               |..++..+..   +.+++++|+++++++.|+++++.......
T Consensus       224 l~~~~i~~~~~~~~~vlD~f~Gs---------------Gt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~~~~~  285 (297)
T 2zig_A          224 LAERLVRMFSFVGDVVLDPFAGT---------------GTTLIAAARW---GRRALGVELVPRYAQLAKERFAREVPGFS  285 (297)
T ss_dssp             HHHHHHHHHCCTTCEEEETTCTT---------------THHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHhCCCCCEEEECCCCC---------------CHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhccccc
Confidence            44444433  3567999999999               9888886663   56999999999999999999988654444


Q ss_pred             EEE
Q 022597          188 VKI  190 (294)
Q Consensus       188 v~~  190 (294)
                      +.+
T Consensus       286 ~~~  288 (297)
T 2zig_A          286 LEV  288 (297)
T ss_dssp             EEE
T ss_pred             hhh
Confidence            443

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.86  E-value=0.0032  Score=57.97  Aligned_cols=102  Identities=19%  Similarity=0.237  Sum_probs=70.1

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++||-+|+|.+              |..++.+++..  +.+|++++.+++..+.+++    .|...-+.....+.
T Consensus       163 ~~~~g~~VlV~GaG~v--------------G~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~  222 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGL--------------GHVAVQYARAM--GLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDP  222 (340)
T ss_dssp             TCCTTSEEEEECCSTT--------------HHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCH
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCH
Confidence            4456779999999865              88888899887  4799999999998876644    56542121111222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.+.+.     .+.+|.||.....   ...++.+.+.|++||.++.-..
T Consensus       223 ~~~~~~~-----~g~~d~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          223 AAWLQKE-----IGGAHGVLVTAVS---PKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             HHHHHHH-----HSSEEEEEESSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             HHHHHHh-----CCCCCEEEEeCCC---HHHHHHHHHHhccCCEEEEeCC
Confidence            2333321     2479999877643   3567788999999999987543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.77  E-value=0.0032  Score=58.80  Aligned_cols=104  Identities=21%  Similarity=0.284  Sum_probs=68.8

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++++||-+|+|.+              |..++.+++... ..+|+++|.+++..+.+++    .|...-+.....+.
T Consensus       187 ~~~~g~~VlV~GaG~v--------------G~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~  247 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAV--------------GLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDP  247 (371)
T ss_dssp             CCCTTCEEEEESCSHH--------------HHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCH
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCCEEecCCccCH
Confidence            3456679999999765              788888888763 2379999999998877754    45432111111222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.+.++   . .+.+|+||-..+.   ...++.+.+.|++||.+++-..
T Consensus       248 ~~~~~~~---~-~gg~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          248 VAAIKEI---T-DGGVNFALESTGS---PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             HHHHHHH---T-TSCEEEEEECSCC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHHHh---c-CCCCcEEEECCCC---HHHHHHHHHHHhcCCEEEEeCC
Confidence            2333332   1 2379999876653   3567788999999999987544

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.76  E-value=0.0038  Score=58.16  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=59.4

Q ss_pred             CCeEEEEcccc--ccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          120 AQRCIEVGVYT--VCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       120 ~~~vLEiG~g~--~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      +.+|||+|+|+  ||             --++..+.+..|.++.|+++|+++-..           ..+  .+++||..+
T Consensus       110 gmrVLDLGA~s~kg~-------------APGS~VLr~~~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~  163 (344)
T 3r24_A          110 NMRVIHFGAGSDKGV-------------APGTAVLRQWLPTGTLLVDSDLNDFVS-----------DAD--STLIGDCAT  163 (344)
T ss_dssp             TCEEEEESCCCTTSB-------------CHHHHHHHHHSCTTCEEEEEESSCCBC-----------SSS--EEEESCGGG
T ss_pred             CCEEEeCCCCCCCCC-------------CCcHHHHHHhCCCCcEEEEeeCccccc-----------CCC--eEEEccccc
Confidence            35999999732  00             222344455566567999999988421           112  448999754


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCcc--------------chHHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~--------------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..       ..++||+|+.|..+.              -.+..++.+.+.|+|||.+++-
T Consensus       164 ~~-------~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          164 VH-------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             EE-------ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cc-------cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence            21       147899999984311              1345566677899999999987

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.69  E-value=0.0021  Score=54.30  Aligned_cols=102  Identities=13%  Similarity=0.159  Sum_probs=62.0

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++++||.+|++.|.             |.....++...  +.+|++++.+++..+.+++    .|...   +......
T Consensus        36 ~~~g~~vlV~Ga~ggi-------------G~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~---~~d~~~~   93 (198)
T 1pqw_A           36 LSPGERVLIHSATGGV-------------GMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEY---VGDSRSV   93 (198)
T ss_dssp             CCTTCEEEETTTTSHH-------------HHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSE---EEETTCS
T ss_pred             CCCCCEEEEeeCCChH-------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCE---EeeCCcH
Confidence            3456799999953211             55555555554  5799999999987765543    45432   1211111


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +..+.+........+|.+|...+.    ..++.+.+.|++||.++.-.
T Consensus        94 ~~~~~~~~~~~~~~~D~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A           94 DFADEILELTDGYGVDVVLNSLAG----EAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             THHHHHHHHTTTCCEEEEEECCCT----HHHHHHHHTEEEEEEEEECS
T ss_pred             HHHHHHHHHhCCCCCeEEEECCch----HHHHHHHHHhccCCEEEEEc
Confidence            222222221113469999977652    56788899999999998743

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.66  E-value=0.01  Score=55.10  Aligned_cols=103  Identities=14%  Similarity=0.143  Sum_probs=69.3

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      ..+.++++||-+|+|.+              |..++.+++..  +. +|+++|.+++..+.++    +.|...   ++..
T Consensus       167 ~~~~~g~~VlV~GaG~v--------------G~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~----~lGa~~---vi~~  223 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPI--------------GMVTLLVAKAM--GAAQVVVTDLSATRLSKAK----EIGADL---VLQI  223 (356)
T ss_dssp             HTCCTTCEEEEECCSHH--------------HHHHHHHHHHT--TCSEEEEEESCHHHHHHHH----HTTCSE---EEEC
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEECCCHHHHHHHH----HhCCCE---EEcC
Confidence            45567789999999764              88888888876  45 8999999999887665    456542   2222


Q ss_pred             c---hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          194 L---AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       194 d---a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +   ..+..+.+.... ...+|+||...+.   ...++.+++.|++||.++.-.
T Consensus       224 ~~~~~~~~~~~i~~~~-~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          224 SKESPQEIARKVEGQL-GCKPEVTIECTGA---EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             SSCCHHHHHHHHHHHH-TSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred             cccccchHHHHHHHHh-CCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEEe
Confidence            2   223333322211 2579999876653   345677889999999998744

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.64  E-value=0.0031  Score=59.58  Aligned_cols=109  Identities=17%  Similarity=0.295  Sum_probs=70.8

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      .+.+.++++||-+|+|.+              |..++.+++... ..+|+++|.+++.++.++    +.|. +-+.....
T Consensus       180 ~~~~~~g~~VlV~GaG~v--------------G~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa-~~i~~~~~  239 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPV--------------GRCAAAGARLLG-AACVIVGDQNPERLKLLS----DAGF-ETIDLRNS  239 (398)
T ss_dssp             HTTCCTTCEEEEECCSHH--------------HHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----TTTC-EEEETTSS
T ss_pred             HcCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCC-cEEcCCCc
Confidence            345567789999999765              778888888763 238999999999887664    3454 21211112


Q ss_pred             ch-hhhHHHHhhcCCCCceeEEEEcCCccc-----------hHHHHHHHHhcccCCeEEEEecc
Q 022597          194 LA-ADSLKALILNGEASSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       194 da-~~~l~~l~~~~~~~~fD~vfiD~~~~~-----------~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +. .+.+..+.   ....+|+||-..+...           ....++.+++.|++||.+++-..
T Consensus       240 ~~~~~~~~~~~---~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          240 APLRDQIDQIL---GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             SCHHHHHHHHH---SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred             chHHHHHHHHh---CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence            22 33333331   1236999987665332           13468888999999999986443

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.57  E-value=0.0031  Score=60.31  Aligned_cols=86  Identities=8%  Similarity=0.021  Sum_probs=57.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++|||+||++               |..|..++..   +++|++||+.+-. .    .+.   -..+|+++.+|+.+
T Consensus       210 ~~G~~vlDLGAaP---------------GGWT~~l~~r---g~~V~aVD~~~l~-~----~l~---~~~~V~~~~~d~~~  263 (375)
T 4auk_A          210 ANGMWAVDLGACP---------------GGWTYQLVKR---NMWVYSVDNGPMA-Q----SLM---DTGQVTWLREDGFK  263 (375)
T ss_dssp             CTTCEEEEETCTT---------------CHHHHHHHHT---TCEEEEECSSCCC-H----HHH---TTTCEEEECSCTTT
T ss_pred             CCCCEEEEeCcCC---------------CHHHHHHHHC---CCEEEEEEhhhcC-h----hhc---cCCCeEEEeCcccc
Confidence            4677999999999               8888777764   6899999976421 1    111   13479999999876


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccC
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRV  236 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkp  236 (294)
                      ..+      ..+++|.|+.|... ......+.+.+.|..
T Consensus       264 ~~~------~~~~~D~vvsDm~~-~p~~~~~l~~~wl~~  295 (375)
T 4auk_A          264 FRP------TRSNISWMVCDMVE-KPAKVAALMAQWLVN  295 (375)
T ss_dssp             CCC------CSSCEEEEEECCSS-CHHHHHHHHHHHHHT
T ss_pred             ccC------CCCCcCEEEEcCCC-ChHHhHHHHHHHHhc
Confidence            532      14689999999753 223333444443333

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.51  E-value=0.015  Score=53.87  Aligned_cols=108  Identities=18%  Similarity=0.164  Sum_probs=71.8

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      .....++++||-+|+|.+              |..++.+++..  +.+ |+++|.+++..+.+++. .    .+-+....
T Consensus       174 ~~~~~~g~~VlV~GaG~v--------------G~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~  232 (363)
T 3m6i_A          174 RAGVRLGDPVLICGAGPI--------------GLITMLCAKAA--GACPLVITDIDEGRLKFAKEI-C----PEVVTHKV  232 (363)
T ss_dssp             HHTCCTTCCEEEECCSHH--------------HHHHHHHHHHT--TCCSEEEEESCHHHHHHHHHH-C----TTCEEEEC
T ss_pred             HcCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-c----hhcccccc
Confidence            345567789999999765              88888888876  455 99999999999888765 1    12233321


Q ss_pred             --cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          193 --GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       193 --gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                        .+..+..+.+........+|+||--.+.   ...++.+.+.|++||.+++-..
T Consensus       233 ~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          233 ERLSAEESAKKIVESFGGIEPAVALECTGV---ESSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CSCCHHHHHHHHHHHTSSCCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECCC
T ss_pred             cccchHHHHHHHHHHhCCCCCCEEEECCCC---hHHHHHHHHHhcCCCEEEEEcc
Confidence              1122333333222224579999876653   3457778899999999987543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.44  E-value=0.0089  Score=55.75  Aligned_cols=102  Identities=10%  Similarity=0.135  Sum_probs=67.8

Q ss_pred             HhhhCCCeEEEEc-cccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILGAQRCIEVG-VYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG-~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      .....+++||-+| +|.+              |..++.+++..  +++|++++.+++..+.+++    .|...-+.....
T Consensus       159 ~~~~~g~~VlV~Ga~G~i--------------G~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~  218 (362)
T 2c0c_A          159 GGLSEGKKVLVTAAAGGT--------------GQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCDRPINYKTE  218 (362)
T ss_dssp             TCCCTTCEEEETTTTBTT--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTTS
T ss_pred             cCCCCCCEEEEeCCCcHH--------------HHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCcEEEecCCh
Confidence            3456678999999 4543              88888888876  5799999999988877654    454321111111


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +..+.+...   . ...+|+||...+.    ..++.+.+.|+++|.++.-.
T Consensus       219 ~~~~~~~~~---~-~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          219 PVGTVLKQE---Y-PEGVDVVYESVGG----AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             CHHHHHHHH---C-TTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECC
T ss_pred             hHHHHHHHh---c-CCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEe
Confidence            222223322   1 3579999877653    46778899999999988643

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.44  E-value=0.00076  Score=61.98  Aligned_cols=119  Identities=16%  Similarity=0.084  Sum_probs=67.1

Q ss_pred             CCHHHHHHHHHHHh--hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQ--ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       103 v~~~~~~lL~~l~~--~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      .+...-+|+...-+  +.+..+|||+|||+               |..+...+...+ ...++++|+.-+........ +
T Consensus        56 rSRaA~KL~ei~ek~~l~~~~~VLDLGaAP---------------GGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~-~  118 (277)
T 3evf_A           56 VSRGTAKLRWFHERGYVKLEGRVIDLGCGR---------------GGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNV-Q  118 (277)
T ss_dssp             SSTHHHHHHHHHHTTSSCCCEEEEEETCTT---------------CHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCC-C
T ss_pred             cccHHHHHHHHHHhCCCCCCCEEEEecCCC---------------CHHHHHHHHhcC-CCcceeEEEeccCccccccc-C
Confidence            44444444433332  34556999999999               888887776433 35677777764321000000 0


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------ch--HHHHHHHHhcccCC-eEEEEecccC
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MY--QEYFELLLQLIRVG-GIIVIDNVLW  247 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~--~~~~~~~~~lLkpg-G~ivid~vl~  247 (294)
                      ..|.  ++....+++ +.. .+    ..++||+|+.|..+.       .+  ..+++.+.+.|+|| |.+|+ .++-
T Consensus       119 ~~g~--~ii~~~~~~-dv~-~l----~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~  186 (277)
T 3evf_A          119 SLGW--NIITFKDKT-DIH-RL----EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA  186 (277)
T ss_dssp             BTTG--GGEEEECSC-CTT-TS----CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC
T ss_pred             cCCC--CeEEEeccc-eeh-hc----CCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC
Confidence            0111  233345554 221 11    257899999996322       11  13467778999999 99999 4543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.43  E-value=0.0095  Score=60.15  Aligned_cols=108  Identities=20%  Similarity=0.232  Sum_probs=73.6

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHC-------CC----CcEEEEEeC---ChHHHHHHH-----------
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-------PE----SGCLVACER---DARSLEVAK-----------  176 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-------~~----~~~v~~id~---~~~~~~~A~-----------  176 (294)
                      +|+|+|.||               |+..+...+..       |.    .-+++++|.   +++.+..+-           
T Consensus        69 ~i~e~gfG~---------------Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~  133 (676)
T 3ps9_A           69 VVAESGFGT---------------GLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAE  133 (676)
T ss_dssp             EEEEECCTT---------------SHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHH
T ss_pred             EEEEeCCch---------------HHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHH
Confidence            899999999               99888776653       11    146899999   666555332           


Q ss_pred             HHHHHh-----CC--------CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccc-hHHHHHHHHhcccCC
Q 022597          177 KYYERA-----GV--------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRM-YQEYFELLLQLIRVG  237 (294)
Q Consensus       177 ~~~~~~-----gl--------~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~-~~~~~~~~~~lLkpg  237 (294)
                      +..+..     |+        .-.+++..||+.+.++.+... ....||.+|.|+.     ++. -.++|..+.++++||
T Consensus       134 ~l~~~~~~~~~~~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~-~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g  212 (676)
T 3ps9_A          134 QLQAQWPMPLPGCHRLLLDAGRVTLDLWFGDINELTSQLDDS-LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPG  212 (676)
T ss_dssp             HHHHHCCCCCSEEEEEEEGGGTEEEEEEESCHHHHGGGBCGG-GTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEE
T ss_pred             HHHHhCcccCCCceEEEecCCcEEEEEecCCHHHHHHhcccc-cCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCC
Confidence            222221     11        124678889999888765211 0367999999975     222 468899999999999


Q ss_pred             eEEEEecc
Q 022597          238 GIIVIDNV  245 (294)
Q Consensus       238 G~ivid~v  245 (294)
                      |.+.-...
T Consensus       213 ~~~~t~~~  220 (676)
T 3ps9_A          213 GTLATFTS  220 (676)
T ss_dssp             EEEEESCC
T ss_pred             CEEEeccC
Confidence            99886543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=96.42  E-value=0.023  Score=52.07  Aligned_cols=107  Identities=17%  Similarity=0.153  Sum_probs=72.3

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ....++++||-.|+|.+              |..++.+++... ...++++|.+++.++.++    +.|..+-+.....+
T Consensus       156 ~~~~~g~~VlV~GaG~v--------------G~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~----~lGa~~~i~~~~~~  216 (346)
T 4a2c_A          156 AQGCENKNVIIIGAGTI--------------GLLAIQCAVALG-AKSVTAIDISSEKLALAK----SFGAMQTFNSSEMS  216 (346)
T ss_dssp             TTCCTTSEEEEECCSHH--------------HHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCSEEEETTTSC
T ss_pred             hccCCCCEEEEECCCCc--------------chHHHHHHHHcC-CcEEEEEechHHHHHHHH----HcCCeEEEeCCCCC
Confidence            34556789999999865              777778888764 456789999999877665    45655433332233


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ..+....+..   ...+|.||...+.   ...++.+.++|++||.+++-...
T Consensus       217 ~~~~~~~~~~---~~g~d~v~d~~G~---~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          217 APQMQSVLRE---LRFNQLILETAGV---PQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             HHHHHHHHGG---GCSSEEEEECSCS---HHHHHHHHHHCCTTCEEEECCCC
T ss_pred             HHHHHHhhcc---cCCcccccccccc---cchhhhhhheecCCeEEEEEecc
Confidence            4344443321   3568888876643   35677888999999999986554

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.42  E-value=0.0051  Score=57.40  Aligned_cols=104  Identities=18%  Similarity=0.142  Sum_probs=69.0

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++||-+|+|.+              |..++.+++..  +++|++++.+++..+.+++    .|...   ++..+.
T Consensus       186 ~~~~g~~VlV~G~G~v--------------G~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~  242 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGV--------------ALFGLQIAKAT--GAEVIVTSSSREKLDRAFA----LGADH---GINRLE  242 (363)
T ss_dssp             CCCTTCEEEEESSBHH--------------HHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSE---EEETTT
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCEEEEEecCchhHHHHHH----cCCCE---EEcCCc
Confidence            3456679999998765              88888888876  5799999999998877654    56542   222222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+..+.+........+|+||-..+.    ..++.+.+.|++||.+++-...
T Consensus       243 ~~~~~~v~~~~~g~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          243 EDWVERVYALTGDRGADHILEIAGG----AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             SCHHHHHHHHHTTCCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECCC
T ss_pred             ccHHHHHHHHhCCCCceEEEECCCh----HHHHHHHHHhhcCCEEEEEecC
Confidence            2222222211113479999977763    2466778899999999876543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.38  E-value=0.0077  Score=56.43  Aligned_cols=109  Identities=18%  Similarity=0.209  Sum_probs=70.8

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      ...+.++++||-+|+|.+              |..++.+++..+ ..+|++++.+++..+.+++    .|...-+.....
T Consensus       177 ~~~~~~g~~VlV~GaG~v--------------G~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~  237 (370)
T 4ej6_A          177 LSGIKAGSTVAILGGGVI--------------GLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGATATVDPSAG  237 (370)
T ss_dssp             HHTCCTTCEEEEECCSHH--------------HHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTTSS
T ss_pred             hcCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEECCCCc
Confidence            345567789999999765              888888888764 2389999999998876654    565422211112


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +..+.+.+..... .+.+|+||-..+.   ...++.+.+.|++||.+++-..
T Consensus       238 ~~~~~i~~~~~~~-~gg~Dvvid~~G~---~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          238 DVVEAIAGPVGLV-PGGVDVVIECAGV---AETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             CHHHHHHSTTSSS-TTCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             CHHHHHHhhhhcc-CCCCCEEEECCCC---HHHHHHHHHHhccCCEEEEEec
Confidence            2222222200011 2489999876543   3567788999999999987544

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.35  E-value=0.0053  Score=56.33  Aligned_cols=101  Identities=17%  Similarity=0.209  Sum_probs=66.2

Q ss_pred             hhCCCeEEEEc-cccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVG-VYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG-~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ..++++||-+| +|.+              |..+..+++..  +++|++++.+++..+.+++    .|...   ++..+.
T Consensus       146 ~~~g~~vlV~Ga~g~i--------------G~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~---~~~~~~  202 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGV--------------GLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGAEY---LINASK  202 (334)
T ss_dssp             CCTTCEEEESSTTBHH--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSE---EEETTT
T ss_pred             CCCCCEEEEECCCCHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcE---EEeCCC
Confidence            44667999999 4433              77777777765  5799999999998876654    45432   222222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+..+.+........+|++|...+.    ..++.+.+.|++||.++.-.
T Consensus       203 ~~~~~~~~~~~~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          203 EDILRQVLKFTNGKGVDASFDSVGK----DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred             chHHHHHHHHhCCCCceEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence            2223332222223579999877654    45777889999999998754

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=96.35  E-value=0.035  Score=50.88  Aligned_cols=106  Identities=17%  Similarity=0.155  Sum_probs=70.6

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ....++++||=+|+|.+              |..+..+++... +.+|+++|.+++..+.++    +.|...-+.....|
T Consensus       159 ~~~~~g~~VlV~GaG~~--------------g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~----~~Ga~~~i~~~~~~  219 (348)
T 4eez_A          159 SGVKPGDWQVIFGAGGL--------------GNLAIQYAKNVF-GAKVIAVDINQDKLNLAK----KIGADVTINSGDVN  219 (348)
T ss_dssp             HTCCTTCEEEEECCSHH--------------HHHHHHHHHHTS-CCEEEEEESCHHHHHHHH----HTTCSEEEEC-CCC
T ss_pred             cCCCCCCEEEEEcCCCc--------------cHHHHHHHHHhC-CCEEEEEECcHHHhhhhh----hcCCeEEEeCCCCC
Confidence            34556789999999863              555555565554 689999999998776554    45655434444444


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+.+.++.   ....+|.++.+...   ...++...+.|+++|.+++-..
T Consensus       220 ~~~~v~~~t---~g~g~d~~~~~~~~---~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          220 PVDEIKKIT---GGLGVQSAIVCAVA---RIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             HHHHHHHHT---TSSCEEEEEECCSC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHhhhhc---CCCCceEEEEeccC---cchhheeheeecCCceEEEEec
Confidence            444444431   23468888887653   3567788899999999987543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.32  E-value=0.0083  Score=55.52  Aligned_cols=107  Identities=20%  Similarity=0.205  Sum_probs=70.4

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      ...+.++++||-+|+|.+              |..++.+++..  +. +|+++|.+++..+.+++    .|...   ++.
T Consensus       161 ~~~~~~g~~VlV~GaG~v--------------G~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~----lGa~~---vi~  217 (352)
T 3fpc_A          161 LANIKLGDTVCVIGIGPV--------------GLMSVAGANHL--GAGRIFAVGSRKHCCDIALE----YGATD---IIN  217 (352)
T ss_dssp             HTTCCTTCCEEEECCSHH--------------HHHHHHHHHTT--TCSSEEEECCCHHHHHHHHH----HTCCE---EEC
T ss_pred             hcCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCce---EEc
Confidence            345567789999999765              88888888865  45 89999999988776654    46532   222


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ....+..+.+........+|+||...+..   ..++.+.+.|++||.++.-...
T Consensus       218 ~~~~~~~~~v~~~t~g~g~D~v~d~~g~~---~~~~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          218 YKNGDIVEQILKATDGKGVDKVVIAGGDV---HTFAQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             GGGSCHHHHHHHHTTTCCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCcCHHHHHHHHcCCCCCCEEEECCCCh---HHHHHHHHHHhcCCEEEEeccc
Confidence            21222223222222234799998665432   4567788999999999875543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.30  E-value=0.012  Score=55.78  Aligned_cols=107  Identities=11%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++++||-+|+|.+              |..++.+++..+ ..+|+++|.+++..+.+++    .|...-+.....+..
T Consensus       211 ~~~g~~VlV~GaG~v--------------G~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~  271 (404)
T 3ip1_A          211 IRPGDNVVILGGGPI--------------GLAAVAILKHAG-ASKVILSEPSEVRRNLAKE----LGADHVIDPTKENFV  271 (404)
T ss_dssp             CCTTCEEEEECCSHH--------------HHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTTTSCHH
T ss_pred             CCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEEcCCCCCHH
Confidence            345679999999765              888888888763 2389999999998877754    454321111112223


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCcc--chHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~--~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +.+.++   .....+|+||--.+..  .+...++.+++.+++||.+++-..
T Consensus       272 ~~i~~~---t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          272 EAVLDY---TNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             HHHHHH---TTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             HHHHHH---hCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            333332   2234799999766544  333444444455599999987544

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.29  E-value=0.012  Score=54.28  Aligned_cols=104  Identities=20%  Similarity=0.263  Sum_probs=71.2

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++||-+|+|.+              |..++.+++... +.+|+++|.+++..+.+++    .|...-+.. ..+.
T Consensus       168 ~~~~g~~vlv~GaG~v--------------G~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lGa~~~i~~-~~~~  227 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGL--------------GHVGIQILRAVS-AARVIAVDLDDDRLALARE----VGADAAVKS-GAGA  227 (345)
T ss_dssp             GCCTTCEEEEECCSHH--------------HHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-STTH
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcC-CCcH
Confidence            4456789999999765              888888888764 5799999999998877654    565432221 1122


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.+.++.   ....+|+||--.+.   ...++.+.+.|++||.+++-..
T Consensus       228 ~~~v~~~t---~g~g~d~v~d~~G~---~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          228 ADAIRELT---GGQGATAVFDFVGA---QSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             HHHHHHHH---GGGCEEEEEESSCC---HHHHHHHHHHEEEEEEEEECSC
T ss_pred             HHHHHHHh---CCCCCeEEEECCCC---HHHHHHHHHHHhcCCEEEEECC
Confidence            33333321   12479999876653   3467788999999999987544

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.28  E-value=0.0078  Score=55.19  Aligned_cols=103  Identities=20%  Similarity=0.147  Sum_probs=67.2

Q ss_pred             HhhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      ..+.++++||-+|+ |.+              |..+..+++..  +.+|++++.+++..+.+.   ++.|...-+.....
T Consensus       145 ~~~~~g~~vlI~Ga~g~i--------------G~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~---~~~g~~~~~~~~~~  205 (336)
T 4b7c_A          145 GQPKNGETVVISGAAGAV--------------GSVAGQIARLK--GCRVVGIAGGAEKCRFLV---EELGFDGAIDYKNE  205 (336)
T ss_dssp             TCCCTTCEEEESSTTSHH--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHH---HTTCCSEEEETTTS
T ss_pred             cCCCCCCEEEEECCCCHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHH---HHcCCCEEEECCCH
Confidence            34556789999998 332              66777777765  579999999998776652   33455321111112


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +..+.+.+.   . .+.+|++|...+.    ..++.+.+.|++||.++.-.
T Consensus       206 ~~~~~~~~~---~-~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          206 DLAAGLKRE---C-PKGIDVFFDNVGG----EILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             CHHHHHHHH---C-TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHHHh---c-CCCceEEEECCCc----chHHHHHHHHhhCCEEEEEe
Confidence            222233332   1 3579999887763    46788899999999998743

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.27  E-value=0.01  Score=56.88  Aligned_cols=60  Identities=12%  Similarity=0.149  Sum_probs=48.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHH-HHCCCCcEEEEEeCChHHHHHHHHHHHH--hCCC-CcEEEEE
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIA-LVLPESGCLVACERDARSLEVAKKYYER--AGVS-HKVKIKH  192 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la-~~~~~~~~v~~id~~~~~~~~A~~~~~~--~gl~-~~v~~~~  192 (294)
                      .++..++|||++.               |..++.++ +..++.++|+++|++|+..+..+++++.  ++.. ++++++.
T Consensus       225 ~~~~~viDvGAn~---------------G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~  288 (409)
T 2py6_A          225 SDSEKMVDCGASI---------------GESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHG  288 (409)
T ss_dssp             CSSCEEEEETCTT---------------SHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEEC
T ss_pred             CCCCEEEECCCCc---------------CHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEE
Confidence            4667999999999               99999988 5555458999999999999999999998  3322 4566553

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.27  E-value=0.025  Score=52.29  Aligned_cols=108  Identities=17%  Similarity=0.232  Sum_probs=69.2

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-  192 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-  192 (294)
                      ...+.++++||-+|+|.+              |..++.+++..  +.+|++++.+++..+.++    +.|...-+.... 
T Consensus       163 ~~~~~~g~~VlV~GaG~v--------------G~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~----~lGa~~~~~~~~~  222 (352)
T 1e3j_A          163 RAGVQLGTTVLVIGAGPI--------------GLVSVLAAKAY--GAFVVCTARSPRRLEVAK----NCGADVTLVVDPA  222 (352)
T ss_dssp             HHTCCTTCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESCHHHHHHHH----HTTCSEEEECCTT
T ss_pred             hcCCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCEEEEEcCCHHHHHHHH----HhCCCEEEcCccc
Confidence            345567789999998754              77888888876  467999999999887765    456542121110 


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+..+.+.+.........+|+||-..+.   ...++.+++.|++||.++.-.
T Consensus       223 ~~~~~~i~~~~~~~~g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          223 KEEESSIIERIRSAIGDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             TSCHHHHHHHHHHHSSSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECS
T ss_pred             ccHHHHHHHHhccccCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            2222223322110002469999876653   345677889999999998744

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.25  E-value=0.0063  Score=55.69  Aligned_cols=102  Identities=13%  Similarity=0.052  Sum_probs=67.1

Q ss_pred             hhCCCeEEEEc-cccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVG-VYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG-~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ..++++||-+| +|.+              |..+..+++..  +++|++++.+++..+.+++    .|...   ++....
T Consensus       138 ~~~g~~VlV~Ga~g~i--------------G~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~---~~~~~~  194 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGV--------------GSLACQWAKAL--GAKLIGTVSSPEKAAHAKA----LGAWE---TIDYSH  194 (325)
T ss_dssp             CCTTCEEEESSTTSHH--------------HHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSE---EEETTT
T ss_pred             CCCCCEEEEEcCCcHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCE---EEeCCC
Confidence            44567999999 5543              77777777765  5799999999998877754    45432   222222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+..+.+........+|++|...+.    ..++.+.+.|++||.++.-..
T Consensus       195 ~~~~~~~~~~~~~~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          195 EDVAKRVLELTDGKKCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             SCHHHHHHHHTTTCCEEEEEESSCG----GGHHHHHTTEEEEEEEEECCC
T ss_pred             ccHHHHHHHHhCCCCceEEEECCCh----HHHHHHHHHhcCCCEEEEEec
Confidence            2223332222223579999877764    356778899999999987543

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.23  E-value=0.011  Score=55.32  Aligned_cols=103  Identities=16%  Similarity=0.251  Sum_probs=68.2

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE--
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--  192 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~--  192 (294)
                      ...++++||-+|+|.+              |..++.+++..  ++ +|+++|.+++..+.++    +.|...-+....  
T Consensus       192 ~~~~g~~VlV~GaG~v--------------G~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~  251 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCV--------------GLSAIIGCKIA--GASRIIAIDINGEKFPKAK----ALGATDCLNPRELD  251 (376)
T ss_dssp             CCCTTCEEEEECCSHH--------------HHHHHHHHHHT--TCSEEEEECSCGGGHHHHH----HTTCSEEECGGGCS
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HhCCcEEEcccccc
Confidence            3445679999999765              88888888876  45 8999999999887664    456532111110  


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  245 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v  245 (294)
                      .+..+.+.++.    .+.+|+||--.+.   ...++.+.+.|++| |.+++-..
T Consensus       252 ~~~~~~v~~~~----~~g~Dvvid~~G~---~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          252 KPVQDVITELT----AGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             SCHHHHHHHHH----TSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             chHHHHHHHHh----CCCccEEEECCCC---HHHHHHHHHHhhcCCCEEEEECC
Confidence            12223333321    2479999876643   35677889999999 99987543

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.22  E-value=0.015  Score=53.58  Aligned_cols=101  Identities=23%  Similarity=0.190  Sum_probs=67.7

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ....+++||-+|+|.+              |..++.+++..  +.+|++++.+++..+.+++    .|...-+.....+.
T Consensus       161 ~~~~g~~VlV~GaG~v--------------G~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~d~~~~~~  220 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGL--------------GHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDA  220 (339)
T ss_dssp             TCCTTCEEEEECCSTT--------------HHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCH
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEecCCCccH
Confidence            4556789999999754              88888888876  4799999999998877653    45432111111122


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+.+.+.     .+.+|+||...+.   ...++.+.+.|++||.++.-.
T Consensus       221 ~~~~~~~-----~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          221 AKFMKEK-----VGGVHAAVVTAVS---KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             HHHHHHH-----HSSEEEEEESSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHH-----hCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEec
Confidence            2223222     1479999877653   345778889999999988643

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.18  E-value=0.005  Score=57.45  Aligned_cols=93  Identities=17%  Similarity=0.201  Sum_probs=62.3

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      .+++|+.||+               |..++.+..+-  -..+.++|+++..++..+.++....        ++|..+...
T Consensus        12 ~~~~dLFaG~---------------Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--------~~Di~~~~~   66 (327)
T 2c7p_A           12 LRFIDLFAGL---------------GGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--------EGDITQVNE   66 (327)
T ss_dssp             CEEEEETCTT---------------THHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--------BSCGGGSCG
T ss_pred             CcEEEECCCc---------------CHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--------cCCHHHcCH
Confidence            4788888887               77777776642  3467899999999999888874311        577776533


Q ss_pred             HHhhcCCCCceeEEEEcCC--------c-------c--chHHHHHHHHhcccCCeEEEEecc
Q 022597          201 ALILNGEASSYDFAFVDAE--------K-------R--MYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~--------~-------~--~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..     -..+|+++.+++        +       +  -+.++++. .+.++|. ++++.||
T Consensus        67 ~~-----~~~~D~l~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~-i~~~~P~-~~~~ENV  121 (327)
T 2c7p_A           67 KT-----IPDHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARI-VREKKPK-VVFMENV  121 (327)
T ss_dssp             GG-----SCCCSEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHH-HHHHCCS-EEEEEEE
T ss_pred             hh-----CCCCCEEEECCCCCCcchhcccCCCcchhhHHHHHHHHH-HHhccCc-EEEEeCc
Confidence            21     246999998754        1       1  13444443 3456885 7888998

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.18  E-value=0.013  Score=54.73  Aligned_cols=103  Identities=17%  Similarity=0.208  Sum_probs=68.0

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE--
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--  192 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~--  192 (294)
                      ...++++||-+|+|.+              |..++.+++..  ++ +|++++.+++..+.++    +.|...-+....  
T Consensus       189 ~~~~g~~VlV~GaG~v--------------G~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~----~lGa~~vi~~~~~~  248 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAV--------------GLAAVMGCHSA--GAKRIIAVDLNPDKFEKAK----VFGATDFVNPNDHS  248 (374)
T ss_dssp             CCCTTCEEEEECCSHH--------------HHHHHHHHHHT--TCSEEEEECSCGGGHHHHH----HTTCCEEECGGGCS
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEEcCCHHHHHHHH----HhCCceEEeccccc
Confidence            3456679999998754              77888888876  45 8999999999887765    356532111100  


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  245 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v  245 (294)
                      .+..+.+.++.    .+.+|+||...+.   ...++.+.+.|++| |.++.-..
T Consensus       249 ~~~~~~~~~~~----~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          249 EPISQVLSKMT----NGGVDFSLECVGN---VGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             SCHHHHHHHHH----TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             hhHHHHHHHHh----CCCCCEEEECCCC---HHHHHHHHHHhhcCCcEEEEEcC
Confidence            11222333321    2479999876643   34577889999999 99887543

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.17  E-value=0.021  Score=53.65  Aligned_cols=108  Identities=19%  Similarity=0.213  Sum_probs=70.4

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ..+.++++||-+|+|.+              |..++.+++..+ ..+|+++|.+++.++.+++    .|.. .+.....+
T Consensus       181 ~~~~~g~~VlV~GaG~v--------------G~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~----lGa~-~i~~~~~~  240 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPV--------------GLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGFE-IADLSLDT  240 (398)
T ss_dssp             TTCCTTCEEEEECCSHH--------------HHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCE-EEETTSSS
T ss_pred             cCCCCCCEEEEECCcHH--------------HHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH----cCCc-EEccCCcc
Confidence            45556789999998765              888888888863 2379999999998877754    5642 11111111


Q ss_pred             -hhhhHHHHhhcCCCCceeEEEEcCCccc------------hHHHHHHHHhcccCCeEEEEecc
Q 022597          195 -AADSLKALILNGEASSYDFAFVDAEKRM------------YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 -a~~~l~~l~~~~~~~~fD~vfiD~~~~~------------~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                       ..+.+.++.   ....+|+||-..+...            ....++.+.+.|++||.+++-..
T Consensus       241 ~~~~~v~~~t---~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          241 PLHEQIAALL---GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             CHHHHHHHHH---SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             hHHHHHHHHh---CCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence             222333321   1247999987655321            23468888999999999987544

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.15  E-value=0.01  Score=55.37  Aligned_cols=104  Identities=16%  Similarity=0.197  Sum_probs=68.0

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE--c
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--G  193 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~--g  193 (294)
                      .+.++++||-+|+|.+              |..++.+++... ..+|+++|.+++..+.++    +.|...-+....  .
T Consensus       188 ~~~~g~~VlV~GaG~v--------------G~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~  248 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGV--------------GFSAIVGCKAAG-ASRIIGVGTHKDKFPKAI----ELGATECLNPKDYDK  248 (373)
T ss_dssp             CCCTTCEEEEECCSHH--------------HHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HTTCSEEECGGGCSS
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCcEEEecccccc
Confidence            3446679999999765              888888888763 238999999999887765    456532111100  1


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  245 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v  245 (294)
                      +..+.+.++   . .+.+|+||--.+.   ...++.+.+.|++| |.++.-..
T Consensus       249 ~~~~~i~~~---t-~gg~Dvvid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          249 PIYEVICEK---T-NGGVDYAVECAGR---IETMMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CHHHHHHHH---T-TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             hHHHHHHHH---h-CCCCCEEEECCCC---HHHHHHHHHHHhcCCCEEEEEcc
Confidence            122223332   1 2479999876543   35577889999999 99886543

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.10  E-value=0.0029  Score=57.69  Aligned_cols=95  Identities=16%  Similarity=0.146  Sum_probs=59.7

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHH--CCC-CcEEEEEeC--ChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALV--LPE-SGCLVACER--DARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~--~~~-~~~v~~id~--~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      .++.+|||+||+.               |.++...+..  ... .+.++++|+  .|-..       ...|+ +-++|+.
T Consensus        72 kpg~~VVDLGaAP---------------GGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv-~~i~~~~  128 (269)
T 2px2_A           72 QPIGKVVDLGCGR---------------GGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGW-NIVTMKS  128 (269)
T ss_dssp             CCCEEEEEETCTT---------------SHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTG-GGEEEEC
T ss_pred             CCCCEEEEcCCCC---------------CHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCc-eEEEeec
Confidence            4567999999999               8888887775  221 356677773  22100       00121 1246666


Q ss_pred             c-chhhhHHHHhhcCCCCceeEEEEcCCccc---------hHHHHHHHHhcccCCe-EEEEe
Q 022597          193 G-LAADSLKALILNGEASSYDFAFVDAEKRM---------YQEYFELLLQLIRVGG-IIVID  243 (294)
Q Consensus       193 g-da~~~l~~l~~~~~~~~fD~vfiD~~~~~---------~~~~~~~~~~lLkpgG-~ivid  243 (294)
                      | |..+.        +..++|+|+.|..+..         ....++.+.+.|+||| .+++-
T Consensus       129 G~Df~~~--------~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK  182 (269)
T 2px2_A          129 GVDVFYK--------PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK  182 (269)
T ss_dssp             SCCGGGS--------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             cCCccCC--------CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence            7 88762        1458999999964211         1125777778999999 88873

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=96.03  E-value=0.0011  Score=61.02  Aligned_cols=116  Identities=16%  Similarity=0.090  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHH--hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLV--QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       103 v~~~~~~lL~~l~--~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      .+...-+|+...-  .+.+..+|||+||+.               |..+...+...+ ...|+++|+.......+... +
T Consensus        72 rSRAAfKL~ei~eK~~Lk~~~~VLDLGaAP---------------GGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~-~  134 (282)
T 3gcz_A           72 VSRGSAKLRWMEERGYVKPTGIVVDLGCGR---------------GGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR-T  134 (282)
T ss_dssp             SSTHHHHHHHHHHTTSCCCCEEEEEETCTT---------------CHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-C
T ss_pred             ecHHHHHHHHHHHhcCCCCCCEEEEeCCCC---------------CHHHHHHHHhcC-CCeeeeEEeccCcccccccc-c
Confidence            4444444433332  234566999999999               888887776443 45788999876432211110 0


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------ch--HHHHHHHHhcccCC--eEEEEe
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MY--QEYFELLLQLIRVG--GIIVID  243 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~--~~~~~~~~~lLkpg--G~ivid  243 (294)
                      ..|. +-+.+ ..+. +.. .+    ..+++|+|+.|..+.       .+  ..+++.+.+.|+||  |.+|+-
T Consensus       135 ~~g~-~ii~~-~~~~-dv~-~l----~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          135 TLGW-NLIRF-KDKT-DVF-NM----EVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             BTTG-GGEEE-ECSC-CGG-GS----CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             cCCC-ceEEe-eCCc-chh-hc----CCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence            1111 12333 3222 111 11    257899999996522       11  23567777899999  999984

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.03  E-value=0.012  Score=54.30  Aligned_cols=100  Identities=12%  Similarity=0.181  Sum_probs=65.5

Q ss_pred             hhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      +..+++||-+|+ |.+              |..+..+++..  +++|++++.+++..+.+++    .|...-+... .+.
T Consensus       157 ~~~g~~VlV~Gasg~i--------------G~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~v~~~~-~~~  215 (342)
T 4eye_A          157 LRAGETVLVLGAAGGI--------------GTAAIQIAKGM--GAKVIAVVNRTAATEFVKS----VGADIVLPLE-EGW  215 (342)
T ss_dssp             CCTTCEEEESSTTSHH--------------HHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCSEEEESS-TTH
T ss_pred             CCCCCEEEEECCCCHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcEEecCc-hhH
Confidence            446779999997 432              77777788776  5799999999998877665    4543212111 222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+.+...   .....+|++|-..+..    .++.+.+.|++||.+++-.
T Consensus       216 ~~~v~~~---~~~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          216 AKAVREA---TGGAGVDMVVDPIGGP----AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             HHHHHHH---TTTSCEEEEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred             HHHHHHH---hCCCCceEEEECCchh----HHHHHHHhhcCCCEEEEEE
Confidence            2333332   1234799999776643    4677889999999998754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.02  E-value=0.012  Score=54.70  Aligned_cols=101  Identities=15%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             hhCCCeEEEEc-cccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVG-VYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG-~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      +.++++||-+| +|.+              |..+..+++..  +++|++++.+++..+.+++    .|...-+.....+.
T Consensus       165 ~~~g~~VlV~Gg~g~i--------------G~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~  224 (353)
T 4dup_A          165 LTEGESVLIHGGTSGI--------------GTTAIQLARAF--GAEVYATAGSTGKCEACER----LGAKRGINYRSEDF  224 (353)
T ss_dssp             CCTTCEEEESSTTSHH--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCH
T ss_pred             CCCCCEEEEEcCCCHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEeCCchHH
Confidence            44667999995 4432              77777777765  5799999999998877764    45432111111222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.+....    ...+|++|...+..    .++.+.+.|++||.++.-..
T Consensus       225 ~~~~~~~~----~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          225 AAVIKAET----GQGVDIILDMIGAA----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             HHHHHHHH----SSCEEEEEESCCGG----GHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHHHHh----CCCceEEEECCCHH----HHHHHHHHhccCCEEEEEEe
Confidence            23333332    35799999877643    46678899999999887543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.00  E-value=0.01  Score=55.61  Aligned_cols=105  Identities=21%  Similarity=0.232  Sum_probs=69.9

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEE--Ec
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HG  193 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~--~g  193 (294)
                      ...++++||-+|+|.+              |..++.+++... ..+|+++|.+++.++.++    +.|..+-+...  ..
T Consensus       190 ~~~~g~~VlV~GaG~v--------------G~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~vi~~~~~~~  250 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTV--------------GLAVAEGAKTAG-ASRIIGIDIDSKKYETAK----KFGVNEFVNPKDHDK  250 (378)
T ss_dssp             CCCTTCCEEEECCSHH--------------HHHHHHHHHHHT-CSCEEEECSCTTHHHHHH----TTTCCEEECGGGCSS
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCcEEEccccCch
Confidence            3446679999999865              888888888763 238999999999887664    45654311111  11


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEeccc
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVL  246 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~vl  246 (294)
                      +..+.+.++   . .+.+|+||--.+.   ...++.+.+.|++| |.+++-...
T Consensus       251 ~~~~~i~~~---~-~gg~D~vid~~g~---~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          251 PIQEVIVDL---T-DGGVDYSFECIGN---VSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             CHHHHHHHH---T-TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             hHHHHHHHh---c-CCCCCEEEECCCC---HHHHHHHHHHhhccCCEEEEEccc
Confidence            222333333   1 3489999876653   35678889999997 999875543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.96  E-value=0.013  Score=53.63  Aligned_cols=102  Identities=18%  Similarity=0.220  Sum_probs=63.9

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-cc
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-gd  194 (294)
                      ....+++||-+|++.+.             |.....+++..  +++|++++.+++..+.++    +.|....+.... .+
T Consensus       142 ~~~~g~~vlV~Ga~ggi-------------G~~~~~~~~~~--G~~V~~~~~~~~~~~~~~----~~g~~~~~d~~~~~~  202 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAV-------------GSVVGQIAKLK--GCKVVGAAGSDEKIAYLK----QIGFDAAFNYKTVNS  202 (333)
T ss_dssp             CCCSSCEEEEESTTBHH-------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCSEEEETTSCSC
T ss_pred             CCCCCCEEEEecCCCcH-------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----hcCCcEEEecCCHHH
Confidence            34566899999983211             66666666654  579999999998877663    335432111111 12


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ..+.+...   . .+.+|.+|..++.    ..++.+.+.|++||.+++-.
T Consensus       203 ~~~~~~~~---~-~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          203 LEEALKKA---S-PDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             HHHHHHHH---C-TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHHH---h-CCCCeEEEECCCh----HHHHHHHHHHhcCCEEEEEe
Confidence            22223322   1 2579999987764    34778889999999998643

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.92  E-value=0.017  Score=53.82  Aligned_cols=103  Identities=17%  Similarity=0.248  Sum_probs=67.4

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE--
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--  192 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~--  192 (294)
                      .+.++++||-+|+|.+              |..++.+++..  ++ +|++++.+++..+.++    +.|...-+....  
T Consensus       188 ~~~~g~~VlV~GaG~v--------------G~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~----~lGa~~vi~~~~~~  247 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGV--------------GLSVIMGCKAA--GAARIIGVDINKDKFAKAK----EVGATECVNPQDYK  247 (374)
T ss_dssp             CCCTTCEEEEECCSHH--------------HHHHHHHHHHT--TCSEEEEECSCGGGHHHHH----HTTCSEEECGGGCS
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HhCCceEecccccc
Confidence            3446679999998764              77888888876  45 8999999999887764    456532111100  


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  245 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v  245 (294)
                      .+..+.+.++.    .+.+|+||--.+.   ...++.+.+.|++| |.++.-..
T Consensus       248 ~~~~~~~~~~~----~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          248 KPIQEVLTEMS----NGGVDFSFEVIGR---LDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             SCHHHHHHHHT----TSCBSEEEECSCC---HHHHHHHHHHBCTTTCEEEECSC
T ss_pred             hhHHHHHHHHh----CCCCcEEEECCCC---HHHHHHHHHHhhcCCcEEEEecc
Confidence            11222233321    2479999876643   34577888999999 99987543

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.91  E-value=0.016  Score=53.92  Aligned_cols=103  Identities=16%  Similarity=0.242  Sum_probs=67.7

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE--
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH--  192 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~--  192 (294)
                      ...++++||-+|+|.+              |..++.+++..  ++ +|++++.+++..+.+++    .|...-+....  
T Consensus       187 ~~~~g~~VlV~GaG~v--------------G~~avqla~~~--Ga~~Vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~  246 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGV--------------GLAVIMGCKVA--GASRIIGVDINKDKFARAKE----FGATECINPQDFS  246 (373)
T ss_dssp             CCCTTCEEEEECCSHH--------------HHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH----HTCSEEECGGGCS
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH----cCCceEecccccc
Confidence            3445679999998764              88888888876  45 89999999998877653    46532111100  


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  245 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v  245 (294)
                      .+..+.+.++   . .+.+|+||--.+.   ...++.+.+.|+++ |.++.-..
T Consensus       247 ~~~~~~v~~~---~-~~g~D~vid~~g~---~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          247 KPIQEVLIEM---T-DGGVDYSFECIGN---VKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             SCHHHHHHHH---T-TSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ccHHHHHHHH---h-CCCCCEEEECCCc---HHHHHHHHHhhccCCcEEEEEec
Confidence            1122223332   1 2479999876643   34577889999999 99987543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.90  E-value=0.018  Score=51.46  Aligned_cols=57  Identities=9%  Similarity=0.212  Sum_probs=42.2

Q ss_pred             HHHHHHhh--hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597          110 LLAMLVQI--LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV  184 (294)
Q Consensus       110 lL~~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl  184 (294)
                      ++..++..  .++..|||..||+               |..+++....   +.+++++|++++.++.|+++++.+++
T Consensus       201 l~~~~i~~~~~~~~~vlD~f~Gs---------------Gtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          201 LIERIIRASSNPNDLVLDCFMGS---------------GTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             HHHHHHHHHCCTTCEEEESSCTT---------------CHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHhCCCCCEEEECCCCC---------------CHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            34444433  3567899999998               8877776653   56999999999999999999987664

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.89  E-value=0.018  Score=54.03  Aligned_cols=103  Identities=17%  Similarity=0.206  Sum_probs=67.4

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCC-cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc-
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPES-GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-  194 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~-~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd-  194 (294)
                      +.++++||-+|+|.+              |..++.+++..  + .+|++++.+++..+.++    +.|...   ++..+ 
T Consensus       193 ~~~g~~VlV~GaG~v--------------G~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~----~lGa~~---vi~~~~  249 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPL--------------GLFGVVIARSL--GAENVIVIAGSPNRLKLAE----EIGADL---TLNRRE  249 (380)
T ss_dssp             CCBTCEEEEECCSHH--------------HHHHHHHHHHT--TBSEEEEEESCHHHHHHHH----HTTCSE---EEETTT
T ss_pred             CCCCCEEEEECcCHH--------------HHHHHHHHHHc--CCceEEEEcCCHHHHHHHH----HcCCcE---EEeccc
Confidence            345679999998754              77888888876  4 59999999999887765    456532   22222 


Q ss_pred             --hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 --AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 --a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                        ..+..+.+........+|+||-..+..   ..++.+.+.|++||.++.-..
T Consensus       250 ~~~~~~~~~v~~~~~g~g~Dvvid~~g~~---~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          250 TSVEERRKAIMDITHGRGADFILEATGDS---RALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             SCHHHHHHHHHHHTTTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             cCcchHHHHHHHHhCCCCCcEEEECCCCH---HHHHHHHHHHhcCCEEEEEec
Confidence              222222222211123699998766532   346778899999999987543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.84  E-value=0.036  Score=51.71  Aligned_cols=98  Identities=17%  Similarity=0.139  Sum_probs=65.7

Q ss_pred             CCCeEEEEc-cccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVG-VYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG-~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+++||-+| +|.+              |..++.+++.+. +.+|++++.+++..+.+++    .|...   ++... .+
T Consensus       171 ~g~~VlV~Ga~G~v--------------G~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~----lGad~---vi~~~-~~  227 (363)
T 4dvj_A          171 AAPAILIVGGAGGV--------------GSIAVQIARQRT-DLTVIATASRPETQEWVKS----LGAHH---VIDHS-KP  227 (363)
T ss_dssp             SEEEEEEESTTSHH--------------HHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH----TTCSE---EECTT-SC
T ss_pred             CCCEEEEECCCCHH--------------HHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH----cCCCE---EEeCC-CC
Confidence            456899998 6654              778888888643 6799999999998877654    56432   22111 12


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..+.+... ..+.+|+||-..+.   ...++.+.+.|++||.++.-
T Consensus       228 ~~~~v~~~-~~~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          228 LAAEVAAL-GLGAPAFVFSTTHT---DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             HHHHHHTT-CSCCEEEEEECSCH---HHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHHHHh-cCCCceEEEECCCc---hhhHHHHHHHhcCCCEEEEE
Confidence            22233222 24689999876543   35677889999999999864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.79  E-value=0.028  Score=51.80  Aligned_cols=101  Identities=15%  Similarity=0.113  Sum_probs=68.5

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .. ++++||-+|+|.+              |..++.+++...++.+|++++.+++..+.+++    .|...   ++....
T Consensus       168 ~~-~g~~VlV~GaG~v--------------G~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~  225 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGL--------------AVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADY---VSEMKD  225 (344)
T ss_dssp             TC-SSCEEEEECCSHH--------------HHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSE---EECHHH
T ss_pred             CC-CCCEEEEECCCHH--------------HHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCE---Eecccc
Confidence            45 7789999999754              88888888876224789999999998877654    45432   221111


Q ss_pred             -hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 -ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 -~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                       .+....+..   ...+|+||-..+.   ...++.+.+.|++||.++.-.
T Consensus       226 ~~~~~~~~~~---g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          226 AESLINKLTD---GLGASIAIDLVGT---EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             HHHHHHHHHT---TCCEEEEEESSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             chHHHHHhhc---CCCccEEEECCCC---hHHHHHHHHHhhcCCEEEEeC
Confidence             223333321   2379999876653   346778889999999998743

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.75  E-value=0.067  Score=49.98  Aligned_cols=98  Identities=19%  Similarity=0.263  Sum_probs=67.1

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++++||-+|+|.+              |..++.+++..  +++|++++.+++..+.+++    .|...   ++....
T Consensus       191 ~~~~g~~VlV~GaG~v--------------G~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~~---vi~~~~  247 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGL--------------GHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGADE---VVNSRN  247 (369)
T ss_dssp             TCCTTCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCSE---EEETTC
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcE---Eecccc
Confidence            4456789999999764              88888888876  5789999999998877764    46432   222222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+..+.+     .+.+|+||.-.+...   .++.+.+.|++||.++.-.
T Consensus       248 ~~~~~~~-----~~g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          248 ADEMAAH-----LKSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             HHHHHTT-----TTCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHh-----hcCCCEEEECCCCHH---HHHHHHHHhccCCEEEEec
Confidence            2333322     257999987665432   3556789999999988643

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.70  E-value=0.014  Score=53.22  Aligned_cols=101  Identities=17%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             hhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      +..+++||-+|+ |.+              |.....+++..  +++|++++.+++..+.+++    .|...   ++....
T Consensus       138 ~~~g~~vlV~Ga~ggi--------------G~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~~---~~~~~~  194 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGV--------------GLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQ---VINYRE  194 (327)
T ss_dssp             CCTTCEEEESSTTBHH--------------HHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSE---EEETTT
T ss_pred             CCCCCEEEEECCCCHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCE---EEECCC
Confidence            445679999994 322              66666666654  5799999999988877764    35432   222111


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+..+.+........+|.+|...+.    ..++.+.+.|++||.++.-.
T Consensus       195 ~~~~~~~~~~~~~~~~D~vi~~~g~----~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          195 EDLVERLKEITGGKKVRVVYDSVGR----DTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             SCHHHHHHHHTTTCCEEEEEECSCG----GGHHHHHHTEEEEEEEEECC
T ss_pred             ccHHHHHHHHhCCCCceEEEECCch----HHHHHHHHHhcCCCEEEEEe
Confidence            2222222221113469999987762    45677889999999988643

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.66  E-value=0.016  Score=53.17  Aligned_cols=102  Identities=14%  Similarity=0.170  Sum_probs=65.4

Q ss_pred             hhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE-c
Q 022597          116 QILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-G  193 (294)
Q Consensus       116 ~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~-g  193 (294)
                      +..++++||-+|+ |.+              |.....+++..  +++|++++.+++..+.+++   +.|...-+.... .
T Consensus       152 ~~~~g~~vlI~Ga~g~i--------------G~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~---~~g~~~~~d~~~~~  212 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAV--------------GQLVGQLAKMM--GCYVVGSAGSKEKVDLLKT---KFGFDDAFNYKEES  212 (345)
T ss_dssp             CCCTTCEEEESSTTSHH--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TSCCSEEEETTSCS
T ss_pred             CCCCCCEEEEECCCcHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCceEEecCCHH
Confidence            3446679999997 332              66666777765  5799999999988776652   235432111110 1


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +..+.+....    .+.+|++|...+.    ..++.+.+.|++||.+++-.
T Consensus       213 ~~~~~~~~~~----~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          213 DLTAALKRCF----PNGIDIYFENVGG----KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             CSHHHHHHHC----TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHHHHh----CCCCcEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence            2223333321    2579999877753    36788899999999998743

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=95.64  E-value=0.043  Score=50.83  Aligned_cols=100  Identities=14%  Similarity=0.045  Sum_probs=60.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-chh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-da~  196 (294)
                      .++++|||+||++               |..+..++...+ ...|+++|+.......... .+..+. +-+.+..+ |..
T Consensus        80 ~~g~~vlDLGaaP---------------GgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~  141 (300)
T 3eld_A           80 RITGRVLDLGCGR---------------GGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVF  141 (300)
T ss_dssp             CCCEEEEEETCTT---------------CHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTT
T ss_pred             CCCCEEEEcCCCC---------------CHHHHHHHHhcC-CceeeeEEecccccccccc-ccccCC-ceEEeecCceee
Confidence            3567999999999               888888886543 4578899986532100000 000010 12333322 221


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCcc-------ch--HHHHHHHHhcccCC-eEEEEe
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKR-------MY--QEYFELLLQLIRVG-GIIVID  243 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~-------~~--~~~~~~~~~lLkpg-G~ivid  243 (294)
                      +    +    ..+++|+|+.|..+.       .+  ..+++.+.+.|+|| |.+|+-
T Consensus       142 ~----l----~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          142 T----M----PTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             T----S----CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             e----c----CCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            1    1    257899999996532       11  34477778999999 999986

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.60  E-value=0.026  Score=52.74  Aligned_cols=75  Identities=13%  Similarity=0.053  Sum_probs=51.8

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      .+++|+.||.               |..++.+..+--.-..|.++|.++..++..+.|+..      ..++.+|..+...
T Consensus         3 ~~v~dLFaG~---------------Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~   61 (343)
T 1g55_A            3 LRVLELYSGV---------------GGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITL   61 (343)
T ss_dssp             EEEEEETCTT---------------CHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCH
T ss_pred             CeEEEeCcCc---------------cHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccH
Confidence            3678888877               777777776521113789999999999988888742      3467788877643


Q ss_pred             HHhhcCCCCceeEEEEcCC
Q 022597          201 ALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~  219 (294)
                      ....   ...+|+++.+++
T Consensus        62 ~~~~---~~~~D~l~~gpP   77 (343)
T 1g55_A           62 EEFD---RLSFDMILMSPP   77 (343)
T ss_dssp             HHHH---HHCCSEEEECCC
T ss_pred             hHcC---cCCcCEEEEcCC
Confidence            2111   126999998876

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.60  E-value=0.045  Score=50.46  Aligned_cols=96  Identities=18%  Similarity=0.262  Sum_probs=64.9

Q ss_pred             CCCeEEEE-ccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEV-GVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEi-G~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++++||-+ |+|.+              |..++.+++..  +++|++++.+++..+.+++    .|...-+.. ..+..+
T Consensus       150 ~g~~VlV~gg~G~v--------------G~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~~-~~~~~~  208 (346)
T 3fbg_A          150 EGKTLLIINGAGGV--------------GSIATQIAKAY--GLRVITTASRNETIEWTKK----MGADIVLNH-KESLLN  208 (346)
T ss_dssp             TTCEEEEESTTSHH--------------HHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCSEEECT-TSCHHH
T ss_pred             CCCEEEEEcCCCHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcEEEEC-CccHHH
Confidence            67799999 56654              77777888876  5799999999998877765    454321111 112223


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+.++    ....+|+||...+.   ...++.+.+.|++||.++.
T Consensus       209 ~~~~~----~~~g~Dvv~d~~g~---~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          209 QFKTQ----GIELVDYVFCTFNT---DMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             HHHHH----TCCCEEEEEESSCH---HHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHh----CCCCccEEEECCCc---hHHHHHHHHHhccCCEEEE
Confidence            33332    14579999876653   3567788899999999975

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.59  E-value=0.0097  Score=54.80  Aligned_cols=104  Identities=13%  Similarity=0.044  Sum_probs=65.7

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++++||-+|+|.+.             |..+..+++..  +++|++++.+++..+.+++    .|...   ++....
T Consensus       141 ~~~~g~~VlV~Ga~g~i-------------G~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lga~~---~~~~~~  198 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAI-------------GHLFAQLSQIL--NFRLIAVTRNNKHTEELLR----LGAAY---VIDTST  198 (340)
T ss_dssp             CCCTTCEEEESSTTSHH-------------HHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE---EEETTT
T ss_pred             ccCCCCEEEEeCCccHH-------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----CCCcE---EEeCCc
Confidence            44567899999987411             66666677765  5799999999998877765    45432   222211


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+..+.+........+|++|-..+....    ....+.|++||.++.-..
T Consensus       199 ~~~~~~~~~~~~~~g~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          199 APLYETVMELTNGIGADAAIDSIGGPDG----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEESSCHHHH----HHHHHTEEEEEEEEECCC
T ss_pred             ccHHHHHHHHhCCCCCcEEEECCCChhH----HHHHHHhcCCCEEEEEee
Confidence            2222222222223579999987764332    234489999999987654

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=95.59  E-value=0.072  Score=50.70  Aligned_cols=24  Identities=13%  Similarity=0.265  Sum_probs=18.9

Q ss_pred             chHHHHHHHHhcccCCeEEEEecc
Q 022597          222 MYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       222 ~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ++..+++...+.|+|||.+++.-.
T Consensus       203 D~~~fL~~ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          203 DLAEFLRARAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEe
Confidence            345567777899999999998655

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=95.58  E-value=0.056  Score=50.25  Aligned_cols=118  Identities=16%  Similarity=0.141  Sum_probs=72.8

Q ss_pred             CCCHHHHHHHHHHHh--hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQ--ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~--~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      -++....+|....-+  +.+..+|||+||++               |..+...+...+ ..+|+++|+-..-.+.- ..+
T Consensus        75 y~SR~~~KL~ei~~~~~l~~~~~VlDLGaap---------------GGwsq~~~~~~g-v~~V~avdvG~~~he~P-~~~  137 (321)
T 3lkz_A           75 PVSRGTAKLRWLVERRFLEPVGKVIDLGCGR---------------GGWCYYMATQKR-VQEVRGYTKGGPGHEEP-QLV  137 (321)
T ss_dssp             CSSTHHHHHHHHHHTTSCCCCEEEEEETCTT---------------CHHHHHHTTCTT-EEEEEEECCCSTTSCCC-CCC
T ss_pred             ccchHHHHHHHHHHhcCCCCCCEEEEeCCCC---------------CcHHHHHHhhcC-CCEEEEEEcCCCCccCc-chh
Confidence            356665555554432  34556999999999               777776665433 35799999976521100 000


Q ss_pred             HHhCCCCcEEEEEc-chhhhHHHHhhcCCCCceeEEEEcCCcc---------chHHHHHHHHhcccCC-eEEEEeccc
Q 022597          180 ERAGVSHKVKIKHG-LAADSLKALILNGEASSYDFAFVDAEKR---------MYQEYFELLLQLIRVG-GIIVIDNVL  246 (294)
Q Consensus       180 ~~~gl~~~v~~~~g-da~~~l~~l~~~~~~~~fD~vfiD~~~~---------~~~~~~~~~~~lLkpg-G~ivid~vl  246 (294)
                      ++.|. .-|+++.+ |.....        ..++|+|++|.+..         .....++.+.+.|++| |-+++ -||
T Consensus       138 ~ql~w-~lV~~~~~~Dv~~l~--------~~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~-KVl  205 (321)
T 3lkz_A          138 QSYGW-NIVTMKSGVDVFYRP--------SECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV-KVL  205 (321)
T ss_dssp             CBTTG-GGEEEECSCCTTSSC--------CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE-EES
T ss_pred             hhcCC-cceEEEeccCHhhCC--------CCCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE-EEc
Confidence            12222 23888887 764331        36799999997621         1234677777889988 88887 444

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.53  E-value=0.047  Score=50.33  Aligned_cols=94  Identities=14%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++++||-+|+|.+              |..++.+++..  +.+|++++.+++..+.++    +.|...   ++ .+.
T Consensus       173 ~~~~g~~VlV~GaG~v--------------G~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~----~lGa~~---v~-~~~  228 (348)
T 3two_A          173 KVTKGTKVGVAGFGGL--------------GSMAVKYAVAM--GAEVSVFARNEHKKQDAL----SMGVKH---FY-TDP  228 (348)
T ss_dssp             TCCTTCEEEEESCSHH--------------HHHHHHHHHHT--TCEEEEECSSSTTHHHHH----HTTCSE---EE-SSG
T ss_pred             CCCCCCEEEEECCcHH--------------HHHHHHHHHHC--CCeEEEEeCCHHHHHHHH----hcCCCe---ec-CCH
Confidence            4556789999999765              88888888876  479999999999887665    456442   22 333


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.         ...+|+||-..+..   ..++.+.+.|++||.++.-..
T Consensus       229 ~~~---------~~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          229 KQC---------KEELDFIISTIPTH---YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             GGC---------CSCEEEEEECCCSC---CCHHHHHTTEEEEEEEEECCC
T ss_pred             HHH---------hcCCCEEEECCCcH---HHHHHHHHHHhcCCEEEEECC
Confidence            211         23799998766543   235678899999999987543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.52  E-value=0.028  Score=51.86  Aligned_cols=100  Identities=15%  Similarity=0.152  Sum_probs=65.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++++||-+|+|.+              |..++.+++..  +. +|++++.+++..+.+++    .|...-+.....+..+
T Consensus       167 ~g~~VlV~GaG~v--------------G~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~  226 (348)
T 2d8a_A          167 SGKSVLITGAGPL--------------GLLGIAVAKAS--GAYPVIVSEPSDFRRELAKK----VGADYVINPFEEDVVK  226 (348)
T ss_dssp             TTCCEEEECCSHH--------------HHHHHHHHHHT--TCCSEEEECSCHHHHHHHHH----HTCSEEECTTTSCHHH
T ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCCcCHHH
Confidence            5679999999754              77888888876  45 89999999988877653    4543211111112222


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+.++   .....+|+||...+.   ...++.+.+.|++||.++.-.
T Consensus       227 ~v~~~---~~g~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          227 EVMDI---TDGNGVDVFLEFSGA---PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             HHHHH---TTTSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHH---cCCCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence            23322   112469999876653   355777889999999988643

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.47  E-value=0.018  Score=52.81  Aligned_cols=101  Identities=14%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             hhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      +.++++||-+|+ |.+              |.....+++..  +++|++++.+++..+.+++    .|...-+.....+.
T Consensus       143 ~~~g~~vlV~Ga~ggi--------------G~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~  202 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGM--------------GHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCHHTINYSTQDF  202 (333)
T ss_dssp             CCTTCEEEETTTTSTT--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCH
T ss_pred             CCCCCEEEEECCccHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHH
Confidence            345679999995 322              77777777765  5799999999988877654    35432111111122


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+.+.+..   ....+|++|...+.    ..++.+.+.|++||.++.-.
T Consensus       203 ~~~i~~~~---~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          203 AEVVREIT---GGKGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             HHHHHHHH---TTCCEEEEEECSCT----TTHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHh---CCCCCeEEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            22222221   13469999977654    45677889999999988643

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.47  E-value=0.044  Score=50.45  Aligned_cols=104  Identities=9%  Similarity=0.048  Sum_probs=65.1

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEE-Ecc
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK-HGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~-~gd  194 (294)
                      ...++++||-+|++.+.             |.....+++..  +.+|++++.+++..+.+++    .|....+.+. ..+
T Consensus       166 ~~~~g~~vlV~Ga~ggi-------------G~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~  226 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGL-------------GSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGEVFIDFTKEKD  226 (347)
T ss_dssp             TCCTTCEEEEETTTSHH-------------HHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCCEEEETTTCSC
T ss_pred             CCCCCCEEEEECCCchH-------------HHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCceEEecCccHh
Confidence            34566799999983211             66666666665  5799999999987766543    4543211111 112


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+.+....    .+.+|++|...+.   ...++.+.+.|++||.++.-..
T Consensus       227 ~~~~~~~~~----~~~~D~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          227 IVGAVLKAT----DGGAHGVINVSVS---EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HHHHHHHHH----TSCEEEEEECSSC---HHHHHHHTTSEEEEEEEEECCC
T ss_pred             HHHHHHHHh----CCCCCEEEECCCc---HHHHHHHHHHHhcCCEEEEEeC
Confidence            222333321    2379999977653   3567788999999999986543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.44  E-value=0.034  Score=51.31  Aligned_cols=97  Identities=15%  Similarity=0.184  Sum_probs=64.1

Q ss_pred             hhCCCeEEEEc-cccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVG-VYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG-~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      +.++++||-+| +|.+              |..++.+++..  +++|+++ .+++.++.++    +.|... +. ...+.
T Consensus       148 ~~~g~~VlV~Ga~g~i--------------G~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~----~lGa~~-i~-~~~~~  204 (343)
T 3gaz_A          148 VQDGQTVLIQGGGGGV--------------GHVAIQIALAR--GARVFAT-ARGSDLEYVR----DLGATP-ID-ASREP  204 (343)
T ss_dssp             CCTTCEEEEETTTSHH--------------HHHHHHHHHHT--TCEEEEE-ECHHHHHHHH----HHTSEE-EE-TTSCH
T ss_pred             CCCCCEEEEecCCCHH--------------HHHHHHHHHHC--CCEEEEE-eCHHHHHHHH----HcCCCE-ec-cCCCH
Confidence            44667999999 4543              77777788776  5799999 8888776654    456543 33 11222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+.+....   ....+|+||-..+.    ..++.+.+.|+++|.++.-
T Consensus       205 ~~~~~~~~---~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          205 EDYAAEHT---AGQGFDLVYDTLGG----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             HHHHHHHH---TTSCEEEEEESSCT----HHHHHHHHHEEEEEEEEES
T ss_pred             HHHHHHHh---cCCCceEEEECCCc----HHHHHHHHHHhcCCeEEEE
Confidence            23333221   13579999877653    4677888999999999874

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.42  E-value=0.011  Score=52.72  Aligned_cols=53  Identities=19%  Similarity=0.184  Sum_probs=40.8

Q ss_pred             cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--c---------------chHHHHHHHHhcccCCeEEEEe
Q 022597          187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--R---------------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~---------------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..++++||+.+.++.+.    .++||+||+|++-  .               .....++.+.++|+|||.+++.
T Consensus         4 ~~~l~~gD~~~~l~~l~----~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            4 INKIHQMNCFDFLDQVE----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSSEEECCHHHHHHHSC----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCeEEechHHHHHHhcc----ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            34688999999887763    4689999999872  1               2345667778899999999875

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.40  E-value=0.034  Score=51.48  Aligned_cols=101  Identities=12%  Similarity=0.105  Sum_probs=65.8

Q ss_pred             HhhhCC------CeEEEEccccccccccccccccCCCcHHH-HHHH-HHCCCCcE-EEEEeCChH---HHHHHHHHHHHh
Q 022597          115 VQILGA------QRCIEVGVYTVCVSSYSTSILSLFSGYSS-LAIA-LVLPESGC-LVACERDAR---SLEVAKKYYERA  182 (294)
Q Consensus       115 ~~~~~~------~~vLEiG~g~~~~~~~~~~~~~~~aG~~s-l~la-~~~~~~~~-v~~id~~~~---~~~~A~~~~~~~  182 (294)
                      ..+.++      ++||-+|+|.+              |..+ +.++ +..  +.+ |++++.+++   ..+.++    +.
T Consensus       162 ~~~~~g~~~~~~~~VlV~GaG~v--------------G~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~----~l  221 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGNGSL--------------GLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIE----EL  221 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECCSHH--------------HHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHH----HT
T ss_pred             cCCCCCcccCCCCEEEEECCCHH--------------HHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHH----Hc
Confidence            455566      89999999654              6666 7777 654  455 999999988   777664    45


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      |.. .+.....+..+ +.++     .+.+|+||-..+.   ...++.+.+.|++||.++.-..
T Consensus       222 Ga~-~v~~~~~~~~~-i~~~-----~gg~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          222 DAT-YVDSRQTPVED-VPDV-----YEQMDFIYEATGF---PKHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             TCE-EEETTTSCGGG-HHHH-----SCCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCc-ccCCCccCHHH-HHHh-----CCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEeC
Confidence            542 12111122333 4333     1379999876653   2457788899999999987543

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.36  E-value=0.04  Score=50.72  Aligned_cols=100  Identities=16%  Similarity=0.130  Sum_probs=61.9

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      +++|+-||.               |..++.+..+-- ... |.++|+++...+..+.++.      ...+..+|..++..
T Consensus        18 ~vidLFaG~---------------GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~   75 (295)
T 2qrv_A           18 RVLSLFDGI---------------ATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQ   75 (295)
T ss_dssp             EEEEETCTT---------------THHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCH
T ss_pred             EEEEeCcCc---------------cHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccH
Confidence            677777776               666666665421 122 6899999998877666542      24677899887643


Q ss_pred             HHhhcCCCCceeEEEEcCC---------cc---------chHHHHHHHHhcccCCe------EEEEeccc
Q 022597          201 ALILNGEASSYDFAFVDAE---------KR---------MYQEYFELLLQLIRVGG------IIVIDNVL  246 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~---------~~---------~~~~~~~~~~~lLkpgG------~ivid~vl  246 (294)
                      .-...  .+.+|+++..++         ++         -+.++++ +.+.++|..      ++++.||-
T Consensus        76 ~~i~~--~~~~Dll~ggpPCQ~fS~ag~~r~g~~d~r~~L~~~~~r-ii~~~~P~~~~~~P~~~l~ENV~  142 (295)
T 2qrv_A           76 KHIQE--WGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYR-LLHDARPKEGDDRPFFWLFENVV  142 (295)
T ss_dssp             HHHHH--TCCCSEEEECCCCGGGBTTCTTCCTTTSTTTTHHHHHHH-HHHHHSCCTTCCCCCEEEEEEES
T ss_pred             HHhcc--cCCcCEEEecCCCccccccCccccccccccchhHHHHHH-HHHHhCcccccCCccEEEEEcCc
Confidence            32211  247999987643         11         1333333 335567762      89999993

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.36  E-value=0.02  Score=52.79  Aligned_cols=101  Identities=18%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             hhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      +..+++||-+|+ |.+              |...+.+++..  +.+|++++.+++..+.+++    .|...   ++....
T Consensus       164 ~~~g~~vlV~Gasg~i--------------G~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga~~---~~d~~~  220 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGV--------------SVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGADE---TVNYTH  220 (343)
T ss_dssp             CCTTCEEEECSTTSTT--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSE---EEETTS
T ss_pred             CCCCCEEEEECCCchH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCCE---EEcCCc
Confidence            345679999998 332              77777777775  5799999999998887754    35432   222111


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+..+.+........+|++|...+.    ..++.+.+.|+++|.++.-.
T Consensus       221 ~~~~~~~~~~~~~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          221 PDWPKEVRRLTGGKGADKVVDHTGA----LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             TTHHHHHHHHTTTTCEEEEEESSCS----SSHHHHHHHEEEEEEEEESS
T ss_pred             ccHHHHHHHHhCCCCceEEEECCCH----HHHHHHHHhhccCCEEEEEe
Confidence            1222222211112479999987762    24667788999999988643

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.26  E-value=0.068  Score=50.73  Aligned_cols=99  Identities=13%  Similarity=0.055  Sum_probs=63.6

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      +++|+.||.               |..++.+..+-  -..+.++|+++..++..+.|+.      ...++.+|..+....
T Consensus         4 ~vidLFsG~---------------GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~   60 (376)
T 3g7u_A            4 NVIDLFSGV---------------GGLSLGAARAG--FDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAE   60 (376)
T ss_dssp             EEEEETCTT---------------SHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHH
T ss_pred             eEEEEccCc---------------CHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHH
Confidence            677777777               76777766652  2456799999999888777653      357788888775322


Q ss_pred             -Hhh-cCCCCceeEEEEcCCcc----------------chHHHHHHHHhcccCCeEEEEecc
Q 022597          202 -LIL-NGEASSYDFAFVDAEKR----------------MYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       202 -l~~-~~~~~~fD~vfiD~~~~----------------~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                       +.. ......+|+|+.+++..                -+.++++ +...++|. ++++.||
T Consensus        61 ~~~~~~~~~~~~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~-~v~~~~P~-~~v~ENV  120 (376)
T 3g7u_A           61 IIKGFFKNDMPIDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYR-LVSELQPL-FFLAENV  120 (376)
T ss_dssp             HHHHHHCSCCCCCEEEECCCCCTTC-------CHHHHHHHHHHHH-HHHHHCCS-EEEEEEC
T ss_pred             HHHhhcccCCCeeEEEecCCCCCcccccCCCCCCchHHHHHHHHH-HHHHhCCC-EEEEecc
Confidence             211 00136799999987611                1233333 33556785 7788888

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.25  E-value=0.038  Score=50.91  Aligned_cols=105  Identities=13%  Similarity=0.173  Sum_probs=65.6

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++||-+|+|.+.             |..+..+++... +.+|++++.+++..+.+++    .|...-+.....+.
T Consensus       167 ~~~~g~~vlV~Gagg~i-------------G~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~----~g~~~~~~~~~~~~  228 (347)
T 1jvb_A          167 SLDPTKTLLVVGAGGGL-------------GTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGADYVINASMQDP  228 (347)
T ss_dssp             TCCTTCEEEEETTTSHH-------------HHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCH
T ss_pred             CCCCCCEEEEECCCccH-------------HHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCEEecCCCccH
Confidence            44567899999998421             556666666541 4789999999998877654    35432111111111


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+.+..+.   ..+.+|++|...+.   ...++.+.+.|++||.++.-.
T Consensus       229 ~~~~~~~~---~~~~~d~vi~~~g~---~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          229 LAEIRRIT---ESKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             HHHHHHHT---TTSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECC
T ss_pred             HHHHHHHh---cCCCceEEEECCCC---HHHHHHHHHHHhcCCEEEEEC
Confidence            12233331   11579999977753   345777889999999998743

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=95.16  E-value=0.2  Score=45.33  Aligned_cols=117  Identities=17%  Similarity=0.113  Sum_probs=73.8

Q ss_pred             CCCHHHHHHHHHHH--hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLV--QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       102 ~v~~~~~~lL~~l~--~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      -.+....+|....-  .+.+..+|+|+||++               |..+...+...+ ..+|+++|+-..-.+.- ..+
T Consensus        59 yrSRa~~KL~ei~ek~~l~~g~~VvDLGaap---------------GGWSq~~a~~~g-~~~V~avdvG~~ghe~P-~~~  121 (267)
T 3p8z_A           59 AVSRGSAKLQWFVERNMVIPEGRVIDLGCGR---------------GGWSYYCAGLKK-VTEVRGYTKGGPGHEEP-VPM  121 (267)
T ss_dssp             CSSTHHHHHHHHHHTTSSCCCEEEEEESCTT---------------SHHHHHHHTSTT-EEEEEEECCCSTTSCCC-CCC
T ss_pred             ccchHHHHHHHHHHhcCCCCCCEEEEcCCCC---------------CcHHHHHHHhcC-CCEEEEEecCCCCccCc-chh
Confidence            35555555544433  244567999999999               877776666543 45899999976533100 011


Q ss_pred             HHhCCCCcEEEEEc-chhhhHHHHhhcCCCCceeEEEEcCCcc---------chHHHHHHHHhcccCCeEEEEeccc
Q 022597          180 ERAGVSHKVKIKHG-LAADSLKALILNGEASSYDFAFVDAEKR---------MYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       180 ~~~gl~~~v~~~~g-da~~~l~~l~~~~~~~~fD~vfiD~~~~---------~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +..|. +.|+|+.+ |....        +..++|.|+.|-...         .....++.+.+.|++ |-+++ -||
T Consensus       122 ~s~gw-n~v~fk~gvDv~~~--------~~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl  187 (267)
T 3p8z_A          122 STYGW-NIVKLMSGKDVFYL--------PPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVL  187 (267)
T ss_dssp             CCTTT-TSEEEECSCCGGGC--------CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EES
T ss_pred             hhcCc-CceEEEeccceeec--------CCccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE-EEc
Confidence            23344 36999998 86332        147899999996521         123467777788998 66766 444

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.10  E-value=0.017  Score=53.44  Aligned_cols=54  Identities=11%  Similarity=0.226  Sum_probs=41.9

Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--c---------------chHHHHHHHHhcccCCeEEEEe
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--R---------------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~---------------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++.++++||+.+.++.+.    .++||+||.|++-  .               ...+.++.+.++|+|||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l~----~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFP----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGSC----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhCC----CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            468999999988766442    5789999999872  1               2456677778999999998873

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.00  E-value=0.043  Score=50.69  Aligned_cols=103  Identities=12%  Similarity=0.108  Sum_probs=64.5

Q ss_pred             hhhCC--CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          116 QILGA--QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       116 ~~~~~--~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      ....+  ++||-.|++.+.             |.....+++..  ++ +|++++.+++..+.+++   ..|...   ++.
T Consensus       155 ~~~~g~~~~vlI~Gasggi-------------G~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~---~~g~~~---~~d  213 (357)
T 2zb4_A          155 HITAGSNKTMVVSGAAGAC-------------GSVAGQIGHFL--GCSRVVGICGTHEKCILLTS---ELGFDA---AIN  213 (357)
T ss_dssp             CCCTTSCCEEEESSTTBHH-------------HHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH---TSCCSE---EEE
T ss_pred             CCCCCCccEEEEECCCcHH-------------HHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHH---HcCCce---EEe
Confidence            44566  899999983211             66666666664  56 99999999887766543   245432   221


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ....+..+.+.... .+.+|++|...+.    ..++.+.+.|++||.++.-.
T Consensus       214 ~~~~~~~~~~~~~~-~~~~d~vi~~~G~----~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          214 YKKDNVAEQLRESC-PAGVDVYFDNVGG----NISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             TTTSCHHHHHHHHC-TTCEEEEEESCCH----HHHHHHHHTEEEEEEEEECC
T ss_pred             cCchHHHHHHHHhc-CCCCCEEEECCCH----HHHHHHHHHhccCcEEEEEC
Confidence            11112222222111 2379999987763    56788899999999998743

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.88  E-value=0.043  Score=52.72  Aligned_cols=102  Identities=15%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             hhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          116 QILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      .+.++++||-+|+ |.+              |..++.+++..  ++++++++.+++.++.+++    .|...-+.....|
T Consensus       225 ~~~~g~~VlV~GasG~v--------------G~~avqlak~~--Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d  284 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGL--------------GSYATQFALAG--GANPICVVSSPQKAEICRA----MGAEAIIDRNAEG  284 (456)
T ss_dssp             CCCTTCEEEETTTTSHH--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTT
T ss_pred             CCCCCCEEEEECCCCHH--------------HHHHHHHHHHc--CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCc
Confidence            3456679999997 543              77888888876  5799999999988877654    5653212111111


Q ss_pred             h-----------------hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          195 A-----------------ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a-----------------~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .                 .+.+.++.   ....+|+||-..+.    +.++.+.++|++||.+++-.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~i~~~t---~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          285 YRFWKDENTQDPKEWKRFGKRIRELT---GGEDIDIVFEHPGR----ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             CCSEEETTEECHHHHHHHHHHHHHHH---TSCCEEEEEECSCH----HHHHHHHHHEEEEEEEEESC
T ss_pred             ccccccccccchHHHHHHHHHHHHHh---CCCCCcEEEEcCCc----hhHHHHHHHhhCCcEEEEEe
Confidence            1                 02222221   13589999876653    46778889999999998754

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.88  E-value=0.062  Score=49.79  Aligned_cols=100  Identities=22%  Similarity=0.212  Sum_probs=66.6

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++++||-+|+|.+              |..++.+++..  +.+|++++.+++..+.+++    .|...   ++....
T Consensus       176 ~~~~g~~VlV~GaG~v--------------G~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---v~~~~~  232 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGI--------------GSMGTLISKAM--GAETYVISRSSRKREDAMK----MGADH---YIATLE  232 (360)
T ss_dssp             TCSTTCEEEEECCSHH--------------HHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE---EEEGGG
T ss_pred             CCCCCCEEEEECCCHH--------------HHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCCCE---EEcCcC
Confidence            4556789999999754              88888888876  4789999999988877654    45432   222222


Q ss_pred             h-hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          196 A-DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~-~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      . +..+.+     .+.+|+||...+.. ....++.+.+.|++||.++.-.
T Consensus       233 ~~~~~~~~-----~~~~D~vid~~g~~-~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          233 EGDWGEKY-----FDTFDLIVVCASSL-TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             TSCHHHHS-----CSCEEEEEECCSCS-TTCCTTTGGGGEEEEEEEEECC
T ss_pred             chHHHHHh-----hcCCCEEEECCCCC-cHHHHHHHHHHhcCCCEEEEec
Confidence            2 333333     25799998766530 0123456788999999988643

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=94.83  E-value=0.029  Score=51.32  Aligned_cols=92  Identities=20%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             cccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          140 ILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       140 ~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      |+|||||.+++.++.....--.+.++|+++...+.-+.++.       -+++.+|..++-..-     -...|+++..++
T Consensus         3 vidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~-----~~~~D~l~ggpP   70 (331)
T 3ubt_Y            3 LISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDE-----FPKCDGIIGGPP   70 (331)
T ss_dssp             EEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGG-----SCCCSEEECCCC
T ss_pred             EEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhh-----CCcccEEEecCC
Confidence            34455555555444433212356799999998877766642       257789987653221     256898875433


Q ss_pred             --------c-------c--chHHHHHHHHhcccCCeEEEEecc
Q 022597          220 --------K-------R--MYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       220 --------~-------~--~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                              +       +  -+.++++ +.+.++|. ++++.||
T Consensus        71 CQ~fS~ag~~~g~~d~R~~L~~~~~r-~i~~~~Pk-~~~~ENV  111 (331)
T 3ubt_Y           71 SQSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKPI-FFLAENV  111 (331)
T ss_dssp             GGGTEETTEECCTTCGGGHHHHHHHH-HHHHHCCS-EEEEEEC
T ss_pred             CCCcCCCCCccCCCCchhHHHHHHHH-HHhccCCe-EEEeeee
Confidence                    1       1  1333333 34557886 7889999

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.81  E-value=0.12  Score=46.58  Aligned_cols=93  Identities=15%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             hhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ..++++||-+|+ |.+              |..++.+++..  +++|++++.+++..+.+++    .|...   ++....
T Consensus       123 ~~~g~~vlV~Ga~G~v--------------G~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~---~~~~~~  179 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGAL--------------GTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAEE---AATYAE  179 (302)
T ss_dssp             CCTTCEEEESSTTBHH--------------HHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCSE---EEEGGG
T ss_pred             CCCCCEEEEECCCcHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCCE---EEECCc
Confidence            446679999998 432              77777778776  5799999999988776643    45432   222111


Q ss_pred             -hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 -ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 -~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                       .+..+.+      +.+|++|. .+.    ..++.+.+.|+++|.++.-
T Consensus       180 ~~~~~~~~------~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          180 VPERAKAW------GGLDLVLE-VRG----KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             HHHHHHHT------TSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC
T ss_pred             chhHHHHh------cCceEEEE-CCH----HHHHHHHHhhccCCEEEEE
Confidence             2232322      57999998 764    3567788999999998864

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=94.81  E-value=0.042  Score=50.96  Aligned_cols=102  Identities=10%  Similarity=0.113  Sum_probs=63.7

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.++++||-+|+..+.             |.....+++..  +++|++++.+++..+.++    +.|...   ++..+..
T Consensus       168 ~~~g~~vlV~Gasggi-------------G~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~----~~ga~~---~~d~~~~  225 (351)
T 1yb5_A          168 VKAGESVLVHGASGGV-------------GLAACQIARAY--GLKILGTAGTEEGQKIVL----QNGAHE---VFNHREV  225 (351)
T ss_dssp             CCTTCEEEEETCSSHH-------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCSE---EEETTST
T ss_pred             CCCcCEEEEECCCChH-------------HHHHHHHHHHC--CCEEEEEeCChhHHHHHH----HcCCCE---EEeCCCc
Confidence            4466799999973211             66666677765  579999999998877554    345432   2221112


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +..+.+........+|++|...+.    ..++.+.+.|++||.++.-.
T Consensus       226 ~~~~~~~~~~~~~~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          226 NYIDKIKKYVGEKGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             THHHHHHHHHCTTCEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred             hHHHHHHHHcCCCCcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence            222222211113479999877653    34677889999999998743

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.75  E-value=0.03  Score=52.02  Aligned_cols=54  Identities=15%  Similarity=0.113  Sum_probs=41.3

Q ss_pred             CcEEEE-EcchhhhHHHHhhcCCCCceeEEEEcCCcc--------------chHHHHHHHHhcccCCeEEEEe
Q 022597          186 HKVKIK-HGLAADSLKALILNGEASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       186 ~~v~~~-~gda~~~l~~l~~~~~~~~fD~vfiD~~~~--------------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ...+++ +||+.+.++.+.    .+++|+||+|++-.              ...+.++.+.++|+|||.+++.
T Consensus        37 ~~~~l~i~gD~l~~L~~l~----~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           37 TTRHVYDVCDCLDTLAKLP----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             CEEEEEEECCHHHHHHTSC----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceEEECCcHHHHHHhCc----cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            346788 999998887652    56899999998721              1345666778899999999885

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=94.75  E-value=0.11  Score=49.61  Aligned_cols=105  Identities=7%  Similarity=0.021  Sum_probs=63.1

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHH-------------C---CCCcEEEEEeCC-----------hHHH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALV-------------L---PESGCLVACERD-----------ARSL  172 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~-------------~---~~~~~v~~id~~-----------~~~~  172 (294)
                      +-+|+|+||++               |..|+.+...             .   ++.-+|+..|+-           +...
T Consensus        53 ~~~IaDlGCss---------------G~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~  117 (384)
T 2efj_A           53 CFKVGDLGCAS---------------GPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFY  117 (384)
T ss_dssp             EEEEEEETCCS---------------SHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEecCCCC---------------CchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhH
Confidence            35899999999               9999987766             1   234677888876           4433


Q ss_pred             HHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-------c-c-----------------------
Q 022597          173 EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-------K-R-----------------------  221 (294)
Q Consensus       173 ~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-------~-~-----------------------  221 (294)
                      +.+   -+..|...+-.+..|........+.   +.+++|+||....       + .                       
T Consensus       118 ~~~---~~~~g~~~~~~f~~gvpgSFy~rlf---p~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~  191 (384)
T 2efj_A          118 RNL---EKENGRKIGSCLIGAMPGSFYSRLF---PEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPP  191 (384)
T ss_dssp             HHH---HHHTCCCTTSEEEEECCSCTTSCCS---CTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHH
T ss_pred             hhh---hhhccCCCCceEEEecchhhhhccC---CCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHH
Confidence            322   1223322233555555433222211   2689999986521       0 0                       


Q ss_pred             -----------chHHHHHHHHhcccCCeEEEEecc
Q 022597          222 -----------MYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       222 -----------~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                                 ++..+++...+.|+|||.+++.-.
T Consensus       192 v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          192 IQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence                       122336666789999999998765

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=94.69  E-value=0.51  Score=43.48  Aligned_cols=110  Identities=15%  Similarity=0.099  Sum_probs=73.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--CCCcEEEEEcchh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAA  196 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--l~~~v~~~~gda~  196 (294)
                      +...||++|||                 .-+.+.-...+++.+++=+| .|+.++..++.+++.|  ...+.+++..|..
T Consensus       102 g~~QvV~LGaG-----------------lDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~  163 (310)
T 2uyo_A          102 GIRQFVILASG-----------------LDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLR  163 (310)
T ss_dssp             TCCEEEEETCT-----------------TCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTT
T ss_pred             CCCeEEEeCCC-----------------CCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchH
Confidence            45679999995                 44443333224457899999 6999999999998765  3567899999987


Q ss_pred             h-hHHHHhhcC-CCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          197 D-SLKALILNG-EASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       197 ~-~l~~l~~~~-~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      + ++..+...+ ..+..=+++.-+     .......+++.+...+.||+.++++.+.
T Consensus       164 d~~~~~l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          164 QDWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             SCHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             hhHHHHHHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            6 333443322 112222232222     2345567888888888999999999874

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=94.54  E-value=0.086  Score=48.52  Aligned_cols=87  Identities=10%  Similarity=0.028  Sum_probs=55.1

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHH
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE  225 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~  225 (294)
                      |..++.+++..  +++|++++.+++..+.+++    .|...-+.....+..+.+.++..   ...+|+||-..+..    
T Consensus       178 G~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~---~~g~D~vid~~g~~----  244 (349)
T 3pi7_A          178 CKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK---AEQPRIFLDAVTGP----  244 (349)
T ss_dssp             HHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH---HHCCCEEEESSCHH----
T ss_pred             HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc---CCCCcEEEECCCCh----
Confidence            66777777776  5799999999998877753    45432122111223333333211   24699998766543    


Q ss_pred             HHHHHHhcccCCeEEEEecc
Q 022597          226 YFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       226 ~~~~~~~lLkpgG~ivid~v  245 (294)
                      .++.+.+.|++||.++.-..
T Consensus       245 ~~~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          245 LASAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             HHHHHHHHSCTTCEEEECCC
T ss_pred             hHHHHHhhhcCCCEEEEEec
Confidence            34678899999999987543

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.53  E-value=0.093  Score=50.04  Aligned_cols=104  Identities=16%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             hhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          116 QILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      .+.++++||-+|+ |.+              |..++.+++..  ++++++++.+++..+.++    +.|...-+.....+
T Consensus       217 ~~~~g~~VlV~GasG~i--------------G~~a~qla~~~--Ga~vi~~~~~~~~~~~~~----~lGa~~~i~~~~~~  276 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGL--------------GSYAIQFVKNG--GGIPVAVVSSAQKEAAVR----ALGCDLVINRAELG  276 (447)
T ss_dssp             CCCTTCEEEETTTTSHH--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCCCEEEHHHHT
T ss_pred             CCCCCCEEEEECCCCHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCCEEEeccccc
Confidence            3456679999997 543              77777777775  579999999998887664    45654322211111


Q ss_pred             h---------------hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          195 A---------------ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a---------------~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .               .+....+.... ...+|++|-..+.    ..++.+.+.|++||.++.-.
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          277 ITDDIADDPRRVVETGRKLAKLVVEKA-GREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             CCTTGGGCHHHHHHHHHHHHHHHHHHH-SSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred             ccccccccccccchhhhHHHHHHHHHh-CCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence            1               00011111111 3579999877764    35778889999999998754

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.40  E-value=0.075  Score=49.16  Aligned_cols=102  Identities=12%  Similarity=0.121  Sum_probs=64.0

Q ss_pred             hhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      +..+++||-+|+ |.+              |.....+++..  +++|++++.+++..+.+++    .|...   ++..+.
T Consensus       160 ~~~g~~vlV~Ga~ggi--------------G~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~g~~~---~~~~~~  216 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGV--------------GTAAIQLTRMA--GAIPLVTAGSQKKLQMAEK----LGAAA---GFNYKK  216 (354)
T ss_dssp             CCTTCEEEESSTTSHH--------------HHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSE---EEETTT
T ss_pred             CCCCCEEEEECCccHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcE---EEecCC
Confidence            345679999984 322              66666666664  5799999999998877643    35431   222111


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+..+.+........+|++|...+..    .++.+.+.|++||.++.-..
T Consensus       217 ~~~~~~~~~~~~~~~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          217 EDFSEATLKFTKGAGVNLILDCIGGS----YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEESSCGG----GHHHHHHHEEEEEEEEECCC
T ss_pred             hHHHHHHHHHhcCCCceEEEECCCch----HHHHHHHhccCCCEEEEEec
Confidence            22222222211134799999877653    35667889999999987543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=94.20  E-value=0.044  Score=50.40  Aligned_cols=95  Identities=11%  Similarity=0.152  Sum_probs=64.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE---cc
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKH---GL  194 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~---gd  194 (294)
                      ++++||-+|+|.+              |..++.+++..  +. +|++++.+++..+.+++.      .+  .++.   .+
T Consensus       164 ~g~~VlV~GaG~v--------------G~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l------a~--~v~~~~~~~  219 (343)
T 2dq4_A          164 SGKSVLITGAGPI--------------GLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY------AD--RLVNPLEED  219 (343)
T ss_dssp             TTSCEEEECCSHH--------------HHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT------CS--EEECTTTSC
T ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh------HH--hccCcCccC
Confidence            6779999999654              77788888876  45 899999999887766553      11  1221   12


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ..+.+.++.    ...+|+||...+.   ...++.+.+.|+++|.++.-.
T Consensus       220 ~~~~~~~~~----~~g~D~vid~~g~---~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          220 LLEVVRRVT----GSGVEVLLEFSGN---EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             HHHHHHHHH----SSCEEEEEECSCC---HHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHhc----CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence            223333321    3469999876653   345778889999999988643

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.20  E-value=0.22  Score=46.06  Aligned_cols=96  Identities=19%  Similarity=0.231  Sum_probs=64.1

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++++||-+|+|.+              |..++.+++..  +++|++++.+++..+.+++   +.|...   ++..+-.+.
T Consensus       180 ~g~~VlV~GaG~v--------------G~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~~---vi~~~~~~~  237 (357)
T 2cf5_A          180 PGLRGGILGLGGV--------------GHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGADD---YVIGSDQAK  237 (357)
T ss_dssp             TTCEEEEECCSHH--------------HHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCCSC---EEETTCHHH
T ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCCce---eeccccHHH
Confidence            6779999998764              88888888876  4799999999987765542   456443   222111233


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +.++     .+.+|+||--.+...   .++.+.+.|++||.++.-.
T Consensus       238 ~~~~-----~~g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          238 MSEL-----ADSLDYVIDTVPVHH---ALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             HHHS-----TTTEEEEEECCCSCC---CSHHHHTTEEEEEEEEECS
T ss_pred             HHHh-----cCCCCEEEECCCChH---HHHHHHHHhccCCEEEEeC
Confidence            3332     347999987665331   2445778999999998744

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=94.10  E-value=0.19  Score=46.72  Aligned_cols=99  Identities=13%  Similarity=0.132  Sum_probs=63.0

Q ss_pred             hCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      .++++||-+|+ |.+              |..++.+++..  +++|+++. +++..+.+    ++.|...-+.....+..
T Consensus       163 ~~g~~VlV~Ga~G~v--------------G~~a~qla~~~--Ga~Vi~~~-~~~~~~~~----~~lGa~~vi~~~~~~~~  221 (371)
T 3gqv_A          163 SKPVYVLVYGGSTAT--------------ATVTMQMLRLS--GYIPIATC-SPHNFDLA----KSRGAEEVFDYRAPNLA  221 (371)
T ss_dssp             SSCCEEEEESTTSHH--------------HHHHHHHHHHT--TCEEEEEE-CGGGHHHH----HHTTCSEEEETTSTTHH
T ss_pred             CCCcEEEEECCCcHH--------------HHHHHHHHHHC--CCEEEEEe-CHHHHHHH----HHcCCcEEEECCCchHH
Confidence            45679999998 432              77888888876  57888875 77776655    45665432222222333


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcc-cCCeEEEEec
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI-RVGGIIVIDN  244 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lL-kpgG~ivid~  244 (294)
                      +.+.++.    .+.+|++|-..+.   ...++.+.+.| ++||.++.-.
T Consensus       222 ~~v~~~t----~g~~d~v~d~~g~---~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          222 QTIRTYT----KNNLRYALDCITN---VESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             HHHHHHT----TTCCCEEEESSCS---HHHHHHHHHHSCTTCEEEEESS
T ss_pred             HHHHHHc----cCCccEEEECCCc---hHHHHHHHHHhhcCCCEEEEEe
Confidence            3333331    3459999876653   34567778888 6999998754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.01  E-value=0.045  Score=49.77  Aligned_cols=54  Identities=19%  Similarity=0.316  Sum_probs=39.4

Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc---cc-------------h-------HHHHHHHHhcccCCeEEEE
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK---RM-------------Y-------QEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~---~~-------------~-------~~~~~~~~~lLkpgG~ivi  242 (294)
                      .++++++||+.+.++.+    +.++||+||.|++-   ..             +       .+.++.+.++|+|||.+++
T Consensus        20 ~~~~i~~gD~~~~l~~l----~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i   95 (297)
T 2zig_A           20 GVHRLHVGDAREVLASF----PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVI   95 (297)
T ss_dssp             -CEEEEESCHHHHHTTS----CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhC----CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence            36899999999876654    25799999999872   11             1       2455677889999999876


Q ss_pred             e
Q 022597          243 D  243 (294)
Q Consensus       243 d  243 (294)
                      .
T Consensus        96 ~   96 (297)
T 2zig_A           96 V   96 (297)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=93.83  E-value=0.16  Score=46.77  Aligned_cols=108  Identities=13%  Similarity=0.116  Sum_probs=62.3

Q ss_pred             hhCC-CeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE--
Q 022597          117 ILGA-QRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--  192 (294)
Q Consensus       117 ~~~~-~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~--  192 (294)
                      +..+ ++||-+|+ |.+              |..++.+++..  +++++++..+++.++..++.+++.|...-+....  
T Consensus       164 ~~~g~~~VlV~Ga~G~v--------------G~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~  227 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAV--------------GKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNN  227 (364)
T ss_dssp             CCTTTCEEEESCTTSHH--------------HHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHH
T ss_pred             cCCCCcEEEECCCCcHH--------------HHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccc
Confidence            3456 79999997 543              77788888876  5788877765543222233445667543121110  


Q ss_pred             -cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          193 -GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       193 -gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                       .+..+.+.++..++ ...+|+||-..+..   ... .+.+.|++||.++.-..
T Consensus       228 ~~~~~~~i~~~t~~~-~~g~Dvvid~~G~~---~~~-~~~~~l~~~G~~v~~g~  276 (364)
T 1gu7_A          228 SREFGPTIKEWIKQS-GGEAKLALNCVGGK---SST-GIARKLNNNGLMLTYGG  276 (364)
T ss_dssp             CGGGHHHHHHHHHHH-TCCEEEEEESSCHH---HHH-HHHHTSCTTCEEEECCC
T ss_pred             hHHHHHHHHHHhhcc-CCCceEEEECCCch---hHH-HHHHHhccCCEEEEecC
Confidence             12222333221000 34799998766532   223 56799999999987543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.82  E-value=0.038  Score=51.26  Aligned_cols=56  Identities=7%  Similarity=0.102  Sum_probs=37.9

Q ss_pred             HHHHHHhh--hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCCh---HHHHHHHHHHHHhC
Q 022597          110 LLAMLVQI--LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDA---RSLEVAKKYYERAG  183 (294)
Q Consensus       110 lL~~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~---~~~~~A~~~~~~~g  183 (294)
                      ++..++..  .++..|||--||+               |..+.+....   +-+.+++|+++   +.++.++++++++|
T Consensus       231 l~~~~i~~~~~~~~~vlDpF~Gs---------------Gtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          231 VIERLVRALSHPGSTVLDFFAGS---------------GVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHSCTTCEEEETTCTT---------------CHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHhCCCCCEEEecCCCC---------------CHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            44444443  3456788887777               7666655554   46899999999   99999999998877

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.79  E-value=0.43  Score=37.95  Aligned_cols=93  Identities=13%  Similarity=0.066  Sum_probs=60.3

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh-
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-  198 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~-  198 (294)
                      .+|+=+|+                 |..+..+++.+. .+..|+++|.+++.++.+++    .    .+.++.||+.+. 
T Consensus         8 ~~viIiG~-----------------G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~   62 (140)
T 3fwz_A            8 NHALLVGY-----------------GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEE   62 (140)
T ss_dssp             SCEEEECC-----------------SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHH
T ss_pred             CCEEEECc-----------------CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHH
Confidence            47889998                 666666666653 35789999999998776543    2    356788987643 


Q ss_pred             -HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          199 -LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 -l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                       +...    .-..+|.+++-.+........-...+.+.|+..++.
T Consensus        63 ~l~~a----~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           63 IMQLA----HLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             HHHHT----TGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             HHHhc----CcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEE
Confidence             3332    135789998876543322223334566777776664

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.70  E-value=0.025  Score=52.35  Aligned_cols=60  Identities=7%  Similarity=-0.032  Sum_probs=42.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++..|||--||+               |..+.+... +  +-+.+++|+++..++.+++++++++..  ...+.+|+.++
T Consensus       252 ~~~~VlDpF~Gs---------------Gtt~~aa~~-~--gr~~ig~e~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~i  311 (323)
T 1boo_A          252 PDDLVVDIFGGS---------------NTTGLVAER-E--SRKWISFEMKPEYVAASAFRFLDNNIS--EEKITDIYNRI  311 (323)
T ss_dssp             TTCEEEETTCTT---------------CHHHHHHHH-T--TCEEEEEESCHHHHHHHHGGGSCSCSC--HHHHHHHHHHH
T ss_pred             CCCEEEECCCCC---------------CHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHhcccc--hHHHHHHHHHH
Confidence            456788877777               665555443 3  568999999999999999999887753  34444555443

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=93.64  E-value=0.088  Score=47.89  Aligned_cols=95  Identities=15%  Similarity=0.219  Sum_probs=59.9

Q ss_pred             eEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          122 RCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       122 ~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      +||-+|+ |.+              |..++.+++..  +++|++++.+++..+.+++    .|...-+.....+ .+.+.
T Consensus       152 ~VlV~Ga~G~v--------------G~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~-~~~~~  210 (328)
T 1xa0_A          152 PVLVTGATGGV--------------GSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKEVLAREDVM-AERIR  210 (328)
T ss_dssp             CEEESSTTSHH--------------HHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSEEEECC---------
T ss_pred             eEEEecCCCHH--------------HHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCCcEEEecCCcH-HHHHH
Confidence            7999997 443              77778888876  4789999999887776653    5643222211111 11122


Q ss_pred             HHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          201 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+    ..+.+|+||-..+..    .++.+.+.|++||.++.-..
T Consensus       211 ~~----~~~~~d~vid~~g~~----~~~~~~~~l~~~G~~v~~G~  247 (328)
T 1xa0_A          211 PL----DKQRWAAAVDPVGGR----TLATVLSRMRYGGAVAVSGL  247 (328)
T ss_dssp             -C----CSCCEEEEEECSTTT----THHHHHHTEEEEEEEEECSC
T ss_pred             Hh----cCCcccEEEECCcHH----HHHHHHHhhccCCEEEEEee
Confidence            21    134799998766542    46678899999999987543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.54  E-value=0.31  Score=45.21  Aligned_cols=96  Identities=15%  Similarity=0.125  Sum_probs=62.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++++||-+|+|.+              |..++.+++..  +.+|++++.+++..+.+++   +.|...   ++...-.+.
T Consensus       187 ~g~~VlV~GaG~v--------------G~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~~---v~~~~~~~~  244 (366)
T 1yqd_A          187 PGKHIGIVGLGGL--------------GHVAVKFAKAF--GSKVTVISTSPSKKEEALK---NFGADS---FLVSRDQEQ  244 (366)
T ss_dssp             TTCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESCGGGHHHHHH---TSCCSE---EEETTCHHH
T ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---hcCCce---EEeccCHHH
Confidence            5679999998764              77778888876  4799999999987765542   445432   222211233


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +.++     .+.+|+||...+...   .++.+.+.|+++|.++.-.
T Consensus       245 ~~~~-----~~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          245 MQAA-----AGTLDGIIDTVSAVH---PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             HHHT-----TTCEEEEEECCSSCC---CSHHHHHHEEEEEEEEECC
T ss_pred             HHHh-----hCCCCEEEECCCcHH---HHHHHHHHHhcCCEEEEEc
Confidence            3333     357999987765331   2345678889999988643

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=93.44  E-value=0.17  Score=46.90  Aligned_cols=95  Identities=9%  Similarity=0.089  Sum_probs=62.4

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCCh---HHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDA---RSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~---~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +++||-+|+|.+              |..++.+++..  +++|++++.++   +..+.+++    .|.. .+   ..+  
T Consensus       181 g~~VlV~GaG~v--------------G~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v---~~~--  234 (366)
T 2cdc_A          181 CRKVLVVGTGPI--------------GVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN-YY---NSS--  234 (366)
T ss_dssp             TCEEEEESCHHH--------------HHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE-EE---ECT--
T ss_pred             CCEEEEECCCHH--------------HHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc-ee---chH--
Confidence            789999999643              76777777765  46999999998   77666543    4542 22   111  


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHH-HHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYF-ELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~-~~~~~lLkpgG~ivid~v  245 (294)
                      +..+.+.. . .+.+|+||...+..   ..+ +.+.+.|++||.++.-..
T Consensus       235 ~~~~~~~~-~-~~~~d~vid~~g~~---~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          235 NGYDKLKD-S-VGKFDVIIDATGAD---VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             TCSHHHHH-H-HCCEEEEEECCCCC---THHHHHHGGGEEEEEEEEECSC
T ss_pred             HHHHHHHH-h-CCCCCEEEECCCCh---HHHHHHHHHHHhcCCEEEEEec
Confidence            22222211 1 25799999776543   235 778899999999887543

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.36  E-value=0.067  Score=48.53  Aligned_cols=93  Identities=15%  Similarity=0.103  Sum_probs=62.6

Q ss_pred             eEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          122 RCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       122 ~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      +||-+|+ |.+              |..++.+++..  +++|++++.+++..+.+++    .|...   ++.....+.. 
T Consensus       149 ~VlV~Ga~G~v--------------G~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~-  204 (324)
T 3nx4_A          149 EVVVTGASGGV--------------GSTAVALLHKL--GYQVAAVSGRESTHGYLKS----LGANR---ILSRDEFAES-  204 (324)
T ss_dssp             CEEESSTTSHH--------------HHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTCSE---EEEGGGSSCC-
T ss_pred             eEEEECCCcHH--------------HHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCE---EEecCCHHHH-
Confidence            4999997 543              88888888876  4799999999998877764    56432   2211111111 


Q ss_pred             HHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          201 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                         .....+.+|++|-..+.    +.++.+++.|+++|.++.-..
T Consensus       205 ---~~~~~~~~d~v~d~~g~----~~~~~~~~~l~~~G~iv~~G~  242 (324)
T 3nx4_A          205 ---RPLEKQLWAGAIDTVGD----KVLAKVLAQMNYGGCVAACGL  242 (324)
T ss_dssp             ---CSSCCCCEEEEEESSCH----HHHHHHHHTEEEEEEEEECCC
T ss_pred             ---HhhcCCCccEEEECCCc----HHHHHHHHHHhcCCEEEEEec
Confidence               11123579998865543    268889999999999987543

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=93.24  E-value=1.2  Score=41.47  Aligned_cols=111  Identities=11%  Similarity=0.091  Sum_probs=72.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC--------------
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--------------  183 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g--------------  183 (294)
                      .+...|+.+|||.               ..-...+....+ +.+++-+|. |+.++.-++.+++.+              
T Consensus        96 ~~~~qVV~LGaGl---------------DTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~  158 (334)
T 1rjd_A           96 NEKVQVVNLGCGS---------------DLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTA  158 (334)
T ss_dssp             CSSEEEEEETCTT---------------CCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCC
T ss_pred             CCCcEEEEeCCCC---------------ccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhccccccccc
Confidence            4567899999987               666666665433 566677776 888888888887752              


Q ss_pred             ------CCCcEEEEEcchhhh--HHHH-hhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEE-EEeccc
Q 022597          184 ------VSHKVKIKHGLAADS--LKAL-ILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGII-VIDNVL  246 (294)
Q Consensus       184 ------l~~~v~~~~gda~~~--l~~l-~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~i-vid~vl  246 (294)
                            ..++.+++..|..+.  +..+ ...+..+...+++.-+-     ......+++.+.... |+|.+ ++|-+.
T Consensus       159 ~~~~~~~~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~  235 (334)
T 1rjd_A          159 KSPFLIDQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG  235 (334)
T ss_dssp             CTTEEEECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred             ccccccCCCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence                  236799999998763  3332 22222345566655432     455677888887777 56655 566553

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=92.87  E-value=0.21  Score=45.31  Aligned_cols=97  Identities=12%  Similarity=0.054  Sum_probs=62.7

Q ss_pred             HHhhhCCCeEEEEc-cccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          114 LVQILGAQRCIEVG-VYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       114 l~~~~~~~~vLEiG-~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      ..+..++++||-+| +|.+              |..++.+++..  +++|++++ +++..+.    +++.|...   ++.
T Consensus       147 ~~~~~~g~~vlV~Ga~G~v--------------G~~a~q~a~~~--Ga~vi~~~-~~~~~~~----~~~lGa~~---~i~  202 (321)
T 3tqh_A          147 QAEVKQGDVVLIHAGAGGV--------------GHLAIQLAKQK--GTTVITTA-SKRNHAF----LKALGAEQ---CIN  202 (321)
T ss_dssp             HTTCCTTCEEEESSTTSHH--------------HHHHHHHHHHT--TCEEEEEE-CHHHHHH----HHHHTCSE---EEE
T ss_pred             hcCCCCCCEEEEEcCCcHH--------------HHHHHHHHHHc--CCEEEEEe-ccchHHH----HHHcCCCE---EEe
Confidence            34556778999997 7654              88888888876  47899887 4444444    45567653   222


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ....+.+...     ...+|+||-..+..    .++.+.+.|++||.++.-
T Consensus       203 ~~~~~~~~~~-----~~g~D~v~d~~g~~----~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          203 YHEEDFLLAI-----STPVDAVIDLVGGD----VGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             TTTSCHHHHC-----CSCEEEEEESSCHH----HHHHHGGGEEEEEEEEEC
T ss_pred             CCCcchhhhh-----ccCCCEEEECCCcH----HHHHHHHhccCCCEEEEe
Confidence            2222212221     25799998766532    237788999999999874

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=92.61  E-value=0.23  Score=46.16  Aligned_cols=98  Identities=13%  Similarity=0.116  Sum_probs=61.8

Q ss_pred             hhCCCeEEEEc-cccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVG-VYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG-~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ..++++||-+| +|.+              |..++.+++..  +++|++++ +++..+.+    ++.|...   ++..+.
T Consensus       181 ~~~g~~VlV~Ga~G~v--------------G~~~~qla~~~--Ga~Vi~~~-~~~~~~~~----~~lGa~~---v~~~~~  236 (375)
T 2vn8_A          181 NCTGKRVLILGASGGV--------------GTFAIQVMKAW--DAHVTAVC-SQDASELV----RKLGADD---VIDYKS  236 (375)
T ss_dssp             TCTTCEEEEETTTSHH--------------HHHHHHHHHHT--TCEEEEEE-CGGGHHHH----HHTTCSE---EEETTS
T ss_pred             cCCCCEEEEECCCCHH--------------HHHHHHHHHhC--CCEEEEEe-ChHHHHHH----HHcCCCE---EEECCc
Confidence            44567999999 5554              77778888876  47899988 66655544    4556432   222221


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+..+.+..   ...+|+||-..+..  ...++...+.|++||.++.-
T Consensus       237 ~~~~~~~~~---~~g~D~vid~~g~~--~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          237 GSVEEQLKS---LKPFDFILDNVGGS--TETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             SCHHHHHHT---SCCBSEEEESSCTT--HHHHGGGGBCSSSCCEEEES
T ss_pred             hHHHHHHhh---cCCCCEEEECCCCh--hhhhHHHHHhhcCCcEEEEe
Confidence            223333321   24799998766533  12356678899999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.52  E-value=0.49  Score=44.26  Aligned_cols=100  Identities=18%  Similarity=0.174  Sum_probs=60.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+++|+=+|+|.+              |.....++...  +.+|+++|.+++..+.+++.   .|.  .+.....+..+
T Consensus       164 l~~~~V~ViGaG~i--------------G~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~---~g~--~~~~~~~~~~~  222 (369)
T 2eez_A          164 VAPASVVILGGGTV--------------GTNAAKIALGM--GAQVTILDVNHKRLQYLDDV---FGG--RVITLTATEAN  222 (369)
T ss_dssp             BCCCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH---TTT--SEEEEECCHHH
T ss_pred             CCCCEEEEECCCHH--------------HHHHHHHHHhC--CCEEEEEECCHHHHHHHHHh---cCc--eEEEecCCHHH
Confidence            35689999999653              65555666655  57999999999877665432   233  23333333322


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccc--hHH-HHHHHHhcccCCeEEEEec
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRM--YQE-YFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~--~~~-~~~~~~~lLkpgG~ivid~  244 (294)
                       +.+..     ..+|+|+...+...  ... +.+...+.+++||+++.-.
T Consensus       223 -l~~~~-----~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          223 -IKKSV-----QHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             -HHHHH-----HHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             -HHHHH-----hCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence             33332     36899987765321  111 2456678899999877543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.47  E-value=0.31  Score=45.06  Aligned_cols=102  Identities=16%  Similarity=0.188  Sum_probs=64.9

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc-
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g-  193 (294)
                      ....++++||-+|+|.+              |..++.+++..+ +++|++++.+++..+.++    +.|...   ++.. 
T Consensus       182 ~~~~~g~~VlV~GaG~v--------------G~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~----~lGa~~---vi~~~  239 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGL--------------GHIAVQLLKVMT-PATVIALDVKEEKLKLAE----RLGADH---VVDAR  239 (359)
T ss_dssp             TTCCTTCEEEEECCSHH--------------HHHHHHHHHHHC-CCEEEEEESSHHHHHHHH----HTTCSE---EEETT
T ss_pred             cCCCCCCEEEEECCCHH--------------HHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HhCCCE---EEecc
Confidence            34556789999999754              888888888762 468999999999887765    356432   2221 


Q ss_pred             c-hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          194 L-AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       194 d-a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      + ..+.+.++.   ....+|+||-..+... ...++.+.+.  +||.++.-.
T Consensus       240 ~~~~~~v~~~~---~g~g~Dvvid~~G~~~-~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          240 RDPVKQVMELT---RGRGVNVAMDFVGSQA-TVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             SCHHHHHHHHT---TTCCEEEEEESSCCHH-HHHHGGGGEE--EEEEEEECC
T ss_pred             chHHHHHHHHh---CCCCCcEEEECCCCch-HHHHHHHhhc--CCCEEEEEe
Confidence            1 122333331   1237999987665321 1156666666  899888644

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=92.42  E-value=0.11  Score=47.80  Aligned_cols=99  Identities=13%  Similarity=0.110  Sum_probs=56.5

Q ss_pred             hhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          116 QILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      +..++++||-+|+ |.+              |..++.+++... +.+|++++ +++..+.++     .|...-+. ...+
T Consensus       139 ~~~~g~~VlV~Ga~G~v--------------G~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~  196 (349)
T 4a27_A          139 NLREGMSVLVHSAGGGV--------------GQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNAD  196 (349)
T ss_dssp             CCCTTCEEEESSTTSHH--------------HHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSC
T ss_pred             CCCCCCEEEEEcCCcHH--------------HHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCcc
Confidence            3456679999998 432              666666666553 56888887 454444332     45443222 1222


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ..+.+..+   . .+.+|+||-..+...    ++.+++.|++||.+++-.
T Consensus       197 ~~~~~~~~---~-~~g~Dvv~d~~g~~~----~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          197 YVQEVKRI---S-AEGVDIVLDCLCGDN----TGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             HHHHHHHH---C-TTCEEEEEEECC-----------CTTEEEEEEEEEEC
T ss_pred             HHHHHHHh---c-CCCceEEEECCCchh----HHHHHHHhhcCCEEEEEC
Confidence            33333333   1 457999997665332    367889999999998754

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=92.29  E-value=0.059  Score=48.84  Aligned_cols=89  Identities=15%  Similarity=0.109  Sum_probs=59.3

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++++||-+|+|.+              |..++.+++..  +++|++++ +++..+.+++    .|..   .++ .| .
T Consensus       140 ~~~g~~VlV~GaG~v--------------G~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~-~d-~  193 (315)
T 3goh_A          140 LTKQREVLIVGFGAV--------------NNLLTQMLNNA--GYVVDLVS-ASLSQALAAK----RGVR---HLY-RE-P  193 (315)
T ss_dssp             CCSCCEEEEECCSHH--------------HHHHHHHHHHH--TCEEEEEC-SSCCHHHHHH----HTEE---EEE-SS-G
T ss_pred             CCCCCEEEEECCCHH--------------HHHHHHHHHHc--CCEEEEEE-ChhhHHHHHH----cCCC---EEE-cC-H
Confidence            346679999999764              88888888876  46999999 8888777654    4542   222 23 1


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                         +.+     .+.+|+||-..+..    .++.+++.|++||.++.-
T Consensus       194 ---~~v-----~~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          194 ---SQV-----TQKYFAIFDAVNSQ----NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             ---GGC-----CSCEEEEECC-----------TTGGGEEEEEEEEEE
T ss_pred             ---HHh-----CCCccEEEECCCch----hHHHHHHHhcCCCEEEEE
Confidence               222     46899998655432    235678999999998864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.13  E-value=0.42  Score=44.64  Aligned_cols=97  Identities=15%  Similarity=0.146  Sum_probs=60.1

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++++|+=+|+|.+              |.....++...  +++|+.+|.+++..+.+++....     .+.....+..+.
T Consensus       166 ~~~~VlViGaGgv--------------G~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~  224 (361)
T 1pjc_A          166 KPGKVVILGGGVV--------------GTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEI  224 (361)
T ss_dssp             CCCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHH
T ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHH
Confidence            4579999999753              66666667665  46999999999988877665422     233333232232


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccc--hHH-HHHHHHhcccCCeEEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKRM--YQE-YFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~--~~~-~~~~~~~lLkpgG~ivi  242 (294)
                      .+.+      ..+|+|+.-.....  .+. ..+...+.+++||+++-
T Consensus       225 ~~~~------~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivd  265 (361)
T 1pjc_A          225 ETAV------AEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVD  265 (361)
T ss_dssp             HHHH------HTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             HHHH------cCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEE
Confidence            2222      36899986554222  011 13446688999997764

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=92.05  E-value=0.029  Score=53.24  Aligned_cols=107  Identities=10%  Similarity=0.078  Sum_probs=64.4

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHH---------------CCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALV---------------LPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~---------------~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      -+|+|+||++               |..|+.+...               -++.-+|+..|+-..-...+-+.+....-.
T Consensus        53 ~~IaDlGCs~---------------G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~  117 (359)
T 1m6e_X           53 LAIADLGCSS---------------GPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV  117 (359)
T ss_dssp             ECCEEESCCS---------------STTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSC
T ss_pred             eEEEecCCCC---------------CcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhccc
Confidence            3799999999               7766654433               234578899998777666554444321100


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC------------------------------------ccchHHHHHH
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------------------------------------KRMYQEYFEL  229 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~------------------------------------~~~~~~~~~~  229 (294)
                      .+-.+..|.....-..+.   +.+++|+||....                                    ..++..+++.
T Consensus       118 ~~~~f~~gvpgSFy~rlf---p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~  194 (359)
T 1m6e_X          118 DGVCFINGVPGSFYGRLF---PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRC  194 (359)
T ss_dssp             TTCEEEEEEESCSSSCCS---CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecchhhhhccC---CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            123444444332211111   2689999986421                                    0123455777


Q ss_pred             HHhcccCCeEEEEecc
Q 022597          230 LLQLIRVGGIIVIDNV  245 (294)
Q Consensus       230 ~~~lLkpgG~ivid~v  245 (294)
                      ..+-|+|||.+++.-.
T Consensus       195 Ra~EL~pGG~mvl~~~  210 (359)
T 1m6e_X          195 RAQEVVPGGRMVLTIL  210 (359)
T ss_dssp             HHHHBCTTCEEEEEEE
T ss_pred             HHHHhcCCceEEEEEe
Confidence            7889999999998655

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=91.93  E-value=0.2  Score=49.24  Aligned_cols=58  Identities=12%  Similarity=0.054  Sum_probs=38.0

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      +++|+-||.               |..++.+..+  .--.|.++|.++...+.-+.++.   ......++.+|..++.
T Consensus        90 ~viDLFaG~---------------GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~---~~p~~~~~~~DI~~i~  147 (482)
T 3me5_A           90 RFIDLFAGI---------------GGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHY---CDPATHHFNEDIRDIT  147 (482)
T ss_dssp             EEEEESCTT---------------SHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSC---CCTTTCEEESCTHHHH
T ss_pred             eEEEecCCc---------------cHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhcc---cCCCcceeccchhhhh
Confidence            677777766               6666665543  12358899999988877666652   1123456778887764

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.90  E-value=0.41  Score=45.06  Aligned_cols=99  Identities=13%  Similarity=0.142  Sum_probs=60.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+++|+=+|+|.+              |.....++..+  +.+|+++|.+++..+.+++.+   |..  +.....+..+
T Consensus       166 l~g~~V~ViG~G~i--------------G~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~---g~~--~~~~~~~~~~  224 (377)
T 2vhw_A          166 VEPADVVVIGAGTA--------------GYNAARIANGM--GATVTVLDINIDKLRQLDAEF---CGR--IHTRYSSAYE  224 (377)
T ss_dssp             BCCCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TTS--SEEEECCHHH
T ss_pred             CCCCEEEEECCCHH--------------HHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhc---CCe--eEeccCCHHH
Confidence            45789999999764              66666666665  469999999998876665432   332  2222222222


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccc--h-HHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRM--Y-QEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~--~-~~~~~~~~~lLkpgG~ivid  243 (294)
                       +.+..     ...|+|+.-...+.  . .-+.+...+.++|||+++--
T Consensus       225 -l~~~l-----~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~v  267 (377)
T 2vhw_A          225 -LEGAV-----KRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDI  267 (377)
T ss_dssp             -HHHHH-----HHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEG
T ss_pred             -HHHHH-----cCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEE
Confidence             33321     36899987543111  1 11234567889999988743

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.82  E-value=0.49  Score=43.36  Aligned_cols=89  Identities=20%  Similarity=0.252  Sum_probs=59.8

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-Cc--EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~--~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++|.=||+                 |..+..++..+.. +.  +|+++|.+++.++.++    +.|..+.   ...+..+
T Consensus        34 ~kI~IIG~-----------------G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~----~~G~~~~---~~~~~~~   89 (314)
T 3ggo_A           34 QNVLIVGV-----------------GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIIDE---GTTSIAK   89 (314)
T ss_dssp             SEEEEESC-----------------SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCSE---EESCTTG
T ss_pred             CEEEEEee-----------------CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH----HCCCcch---hcCCHHH
Confidence            47888998                 4455555554422 33  8999999998876654    3454321   1233332


Q ss_pred             -hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          198 -SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 -~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                       .         ....|+||+-.+.....+.++.+.+.+++|.++ +|
T Consensus        90 ~~---------~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv-~d  126 (314)
T 3ggo_A           90 VE---------DFSPDFVMLSSPVRTFREIAKKLSYILSEDATV-TD  126 (314)
T ss_dssp             GG---------GGCCSEEEECSCGGGHHHHHHHHHHHSCTTCEE-EE
T ss_pred             Hh---------hccCCEEEEeCCHHHHHHHHHHHhhccCCCcEE-EE
Confidence             2         246899999988777888899999999988755 44

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.58  E-value=0.76  Score=40.57  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=51.7

Q ss_pred             cHHHHHHHHHCCC-Cc--EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCC-ceeEEEEcCCcc
Q 022597          146 GYSSLAIALVLPE-SG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYDFAFVDAEKR  221 (294)
Q Consensus       146 G~~sl~la~~~~~-~~--~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~-~fD~vfiD~~~~  221 (294)
                      |..+..++..+.. +.  +|+++|.+++..+.++    +.|...  .. ..+..+.         .. ..|+||+-.+..
T Consensus        10 G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~~-~~~~~~~---------~~~~aDvVilavp~~   73 (281)
T 2g5c_A           10 GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--EG-TTSIAKV---------EDFSPDFVMLSSPVR   73 (281)
T ss_dssp             SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--EE-ESCGGGG---------GGTCCSEEEECSCHH
T ss_pred             CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--cc-cCCHHHH---------hcCCCCEEEEcCCHH
Confidence            5555565555432 23  7999999998776543    345432  11 2233222         24 689999998877


Q ss_pred             chHHHHHHHHhcccCCeEEE
Q 022597          222 MYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       222 ~~~~~~~~~~~lLkpgG~iv  241 (294)
                      ...+.++.+.+.+++|.+++
T Consensus        74 ~~~~v~~~l~~~l~~~~iv~   93 (281)
T 2g5c_A           74 TFREIAKKLSYILSEDATVT   93 (281)
T ss_dssp             HHHHHHHHHHHHSCTTCEEE
T ss_pred             HHHHHHHHHHhhCCCCcEEE
Confidence            77788888888899887554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.57  E-value=0.91  Score=37.38  Aligned_cols=98  Identities=12%  Similarity=0.034  Sum_probs=58.0

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-C-CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-E-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~-~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+|+=+|+                 |..+..+++.+. . +..|+++|.+++..+.++    ..|    +.++.+|..+
T Consensus        39 ~~~v~IiG~-----------------G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~----~~g----~~~~~gd~~~   93 (183)
T 3c85_A           39 HAQVLILGM-----------------GRIGTGAYDELRARYGKISLGIEIREEAAQQHR----SEG----RNVISGDATD   93 (183)
T ss_dssp             TCSEEEECC-----------------SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHH----HTT----CCEEECCTTC
T ss_pred             CCcEEEECC-----------------CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHH----HCC----CCEEEcCCCC
Confidence            347999998                 666677666653 2 568999999998776543    333    4566777654


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      . ..+........+|.|++-.+........-...+.+.|++.++..
T Consensus        94 ~-~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A           94 P-DFWERILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             H-HHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             H-HHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            2 11211101356899998655332222222334556677777653

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=91.37  E-value=0.073  Score=61.76  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=52.4

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC----CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~----~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ..+|||||.|+               |..+..+...+..    ..+++..|+++...+.|++.++...    +....-|.
T Consensus      1241 ~~~ilEigagt---------------g~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~ 1301 (2512)
T 2vz8_A         1241 KMKVVEVLAGD---------------GQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDP 1301 (2512)
T ss_dssp             EEEEEEESCSS---------------SCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCS
T ss_pred             CceEEEECCCc---------------cHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----cccccccc
Confidence            45999999999               7666666666542    2478899999999888888887532    22110011


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+. ..+    ..++||+|+....   ..+..+.+..+.++|+|||.+++..+
T Consensus      1302 ~~~-~~~----~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1302 ANP-APG----SLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             SCC-CC---------CCEEEEECC--------------------CCEEEEEEC
T ss_pred             ccc-ccC----CCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence            110 000    1357999986532   23456778889999999999998754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.36  E-value=2.4  Score=32.44  Aligned_cols=95  Identities=18%  Similarity=0.134  Sum_probs=56.2

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      .+|+=+|+                 |..+..++..+. .+.+|+.+|.+++..+.+++   ..|    +.++.+|..+. 
T Consensus         5 m~i~IiG~-----------------G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~---~~~----~~~~~~d~~~~-   59 (140)
T 1lss_A            5 MYIIIAGI-----------------GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASA---EID----ALVINGDCTKI-   59 (140)
T ss_dssp             CEEEEECC-----------------SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HCS----SEEEESCTTSH-
T ss_pred             CEEEEECC-----------------CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---hcC----cEEEEcCCCCH-
Confidence            47888888                 666666666553 35689999999987654432   222    45667776432 


Q ss_pred             HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      ..+.... ...+|.|++-.+.......+..+.+.+.++-+++
T Consensus        60 ~~l~~~~-~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           60 KTLEDAG-IEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             HHHHHTT-TTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHcC-cccCCEEEEeeCCchHHHHHHHHHHHcCCCEEEE
Confidence            1111111 3578999987764433344444556677765443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=91.27  E-value=0.52  Score=45.91  Aligned_cols=101  Identities=11%  Similarity=0.133  Sum_probs=62.4

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHH---HhCC---------
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYE---RAGV---------  184 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~---~~gl---------  184 (294)
                      .+..+|--||+                 |+.++.++..+.. +.+|+++|++++.++..++...   ..|+         
T Consensus         6 ~~~~~I~VIG~-----------------G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~   68 (478)
T 2y0c_A            6 HGSMNLTIIGS-----------------GSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRS   68 (478)
T ss_dssp             -CCCEEEEECC-----------------SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH
T ss_pred             CCCceEEEECc-----------------CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcc
Confidence            35568889999                 6666666665532 4689999999998776654210   0010         


Q ss_pred             CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..++++ ..|..+.+         ...|+||+-.+.          ....+.++.+.+.|++|.+++.-..
T Consensus        69 ~~~l~~-ttd~~~a~---------~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~ST  129 (478)
T 2y0c_A           69 AGRLRF-STDIEAAV---------AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKST  129 (478)
T ss_dssp             TTCEEE-ECCHHHHH---------HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             cCCEEE-ECCHHHHh---------hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            112333 22332222         357999987653          4456777888889999887765443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.93  E-value=2.1  Score=36.71  Aligned_cols=96  Identities=18%  Similarity=0.112  Sum_probs=62.2

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      .++|+=+|+                 |..+..+++.+...+.|+.+|.+++.++.++     .    .+.++.||+.+. 
T Consensus         9 ~~~viI~G~-----------------G~~G~~la~~L~~~g~v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~-   61 (234)
T 2aef_A            9 SRHVVICGW-----------------SESTLECLRELRGSEVFVLAEDENVRKKVLR-----S----GANFVHGDPTRV-   61 (234)
T ss_dssp             -CEEEEESC-----------------CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH-----T----TCEEEESCTTCH-
T ss_pred             CCEEEEECC-----------------ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh-----c----CCeEEEcCCCCH-
Confidence            348999888                 7788888888865434999999998765443     2    378889998642 


Q ss_pred             HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..+...+ -...|.|++-.+........-...+.+.|+..++..
T Consensus        62 ~~l~~a~-i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           62 SDLEKAN-VRGARAVIVDLESDSETIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             HHHHHTT-CTTCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             HHHHhcC-cchhcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            1221111 357899988765443333344445667787666653

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=90.72  E-value=0.11  Score=47.33  Aligned_cols=95  Identities=16%  Similarity=0.160  Sum_probs=61.0

Q ss_pred             eEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          122 RCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       122 ~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      +||-+|+ |.+              |..++.+++..  +++|++++.+++..+.+++    .|...   ++  |..+.-.
T Consensus       153 ~VlV~Ga~G~v--------------G~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~---v~--~~~~~~~  207 (330)
T 1tt7_A          153 SVLVTGATGGV--------------GGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGASE---VI--SREDVYD  207 (330)
T ss_dssp             CEEEESTTSHH--------------HHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCSE---EE--EHHHHCS
T ss_pred             eEEEECCCCHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcE---EE--ECCCchH
Confidence            7999997 543              77777788776  4789999999887776654    45432   22  1211100


Q ss_pred             HHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          201 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ........+.+|++|-..+.    +.++.+.+.|++||.++.-..
T Consensus       208 ~~~~~~~~~~~d~vid~~g~----~~~~~~~~~l~~~G~iv~~G~  248 (330)
T 1tt7_A          208 GTLKALSKQQWQGAVDPVGG----KQLASLLSKIQYGGSVAVSGL  248 (330)
T ss_dssp             SCCCSSCCCCEEEEEESCCT----HHHHHHHTTEEEEEEEEECCC
T ss_pred             HHHHHhhcCCccEEEECCcH----HHHHHHHHhhcCCCEEEEEec
Confidence            00011113469999876653    357788999999999987543

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=90.71  E-value=0.26  Score=46.01  Aligned_cols=90  Identities=14%  Similarity=0.111  Sum_probs=54.3

Q ss_pred             hCCCeEEEE--ccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          118 LGAQRCIEV--GVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEi--G~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .++++||-+  |+|.+              |..++.+++..  +++|++++.+++..+.+++    .|...-+.....+.
T Consensus       169 ~~g~~vlV~gag~G~v--------------G~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~  228 (379)
T 3iup_A          169 LEGHSALVHTAAASNL--------------GQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTF  228 (379)
T ss_dssp             HTTCSCEEESSTTSHH--------------HHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTH
T ss_pred             cCCCEEEEECCCCCHH--------------HHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHH
Confidence            567789988  55543              66777777776  4789999999998877654    66554232222233


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccc-hHHHHHHH
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELL  230 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~-~~~~~~~~  230 (294)
                      .+.+.++..   ...+|+||-..+... ....++.+
T Consensus       229 ~~~v~~~t~---~~g~d~v~d~~g~~~~~~~~~~~l  261 (379)
T 3iup_A          229 MQDLTEALV---STGATIAFDATGGGKLGGQILTCM  261 (379)
T ss_dssp             HHHHHHHHH---HHCCCEEEESCEEESHHHHHHHHH
T ss_pred             HHHHHHHhc---CCCceEEEECCCchhhHHHHHHhc
Confidence            333333211   236999987665433 34444444

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.65  E-value=1.8  Score=33.82  Aligned_cols=70  Identities=11%  Similarity=0.228  Sum_probs=47.8

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh-
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-  198 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~-  198 (294)
                      ++++=+|+                 |..+..+++.+. .+.+|+++|.+++.++.+++    .|    +.++.+|..+. 
T Consensus         7 ~~v~I~G~-----------------G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~----~~~~~gd~~~~~   61 (141)
T 3llv_A            7 YEYIVIGS-----------------EAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----EG----FDAVIADPTDES   61 (141)
T ss_dssp             CSEEEECC-----------------SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT----CEEEECCTTCHH
T ss_pred             CEEEEECC-----------------CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC----CcEEECCCCCHH
Confidence            47899998                 556666666553 35789999999987765543    22    57788888653 


Q ss_pred             -HHHHhhcCCCCceeEEEEcCC
Q 022597          199 -LKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       199 -l~~l~~~~~~~~fD~vfiD~~  219 (294)
                       +...    ....+|.|++-.+
T Consensus        62 ~l~~~----~~~~~d~vi~~~~   79 (141)
T 3llv_A           62 FYRSL----DLEGVSAVLITGS   79 (141)
T ss_dssp             HHHHS----CCTTCSEEEECCS
T ss_pred             HHHhC----CcccCCEEEEecC
Confidence             3322    1357899988766

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=90.64  E-value=0.79  Score=42.62  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=53.4

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC------
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------  219 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~------  219 (294)
                      |..++.+..+--....+.++|+++...+.-+.|+..      ..+..+|..+....-..   ...+|+++..++      
T Consensus        14 GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~---~~~~D~l~ggpPCQ~fS~   84 (333)
T 4h0n_A           14 GGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIK---KWNVDTILMSPPCQPFTR   84 (333)
T ss_dssp             THHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHH---HTTCCEEEECCCCCCSEE
T ss_pred             cHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhc---cCCCCEEEecCCCcchhh
Confidence            656666655421114578999999988877776632      34567888765432211   136899987644      


Q ss_pred             --c-------c--chHHHHHHHHhccc-CCeEEEEecc
Q 022597          220 --K-------R--MYQEYFELLLQLIR-VGGIIVIDNV  245 (294)
Q Consensus       220 --~-------~--~~~~~~~~~~~lLk-pgG~ivid~v  245 (294)
                        +       +  -+.++++ +.+.++ |. ++++.||
T Consensus        85 ag~~~~~~d~r~~L~~~~~r-~i~~~~~P~-~~vlENV  120 (333)
T 4h0n_A           85 NGKYLDDNDPRTNSFLYLIG-ILDQLDNVD-YILMENV  120 (333)
T ss_dssp             TTEECCTTCTTSCCHHHHHH-HGGGCTTCC-EEEEEEC
T ss_pred             hhhccCCcCcccccHHHHHH-HHHHhcCCC-EEEEecc
Confidence              1       1  1344443 344555 64 7888998

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=90.54  E-value=0.84  Score=42.90  Aligned_cols=93  Identities=14%  Similarity=0.108  Sum_probs=68.3

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-cEEEEEcchhhhH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSL  199 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-~v~~~~gda~~~l  199 (294)
                      .+||.++-..               |..+.+++..     .++.+.-+--.....+.|++++|+.. .+++..... +  
T Consensus        40 ~~~~~~~d~~---------------gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~--   96 (375)
T 4dcm_A           40 GPVLILNDAF---------------GALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDSTA-D--   96 (375)
T ss_dssp             SCEEEECCSS---------------SHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTS-C--
T ss_pred             CCEEEECCCC---------------CHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEeccccc-c--
Confidence            4799999999               9888887643     34666556666778889999999975 477653321 1  


Q ss_pred             HHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEe
Q 022597          200 KALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                        +     .+.||+|++-.++  ......+..+...|++|+.+++-
T Consensus        97 --~-----~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~  135 (375)
T 4dcm_A           97 --Y-----PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG  135 (375)
T ss_dssp             --C-----CSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred             --c-----ccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence              1     5789999887764  44567778888999999988764

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=90.46  E-value=1.9  Score=41.70  Aligned_cols=99  Identities=11%  Similarity=0.214  Sum_probs=62.6

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH------------HHHhCCCCcE
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY------------YERAGVSHKV  188 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~------------~~~~gl~~~v  188 (294)
                      .+|-=||+                 |+.+..++..+..+.+|+++|++++.++..++.            +++ + ..++
T Consensus        37 mkIaVIGl-----------------G~mG~~lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~-~~~l   97 (432)
T 3pid_A           37 MKITISGT-----------------GYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-K-PLNF   97 (432)
T ss_dssp             CEEEEECC-----------------SHHHHHHHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S-CCCE
T ss_pred             CEEEEECc-----------------CHHHHHHHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhh-c-cCCe
Confidence            47878888                 777777776665467999999999988766541            111 1 1134


Q ss_pred             EEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-----------chHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          189 KIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-----------~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      ++. .|..+.+         ...|+||+-.+..           ......+.+.+ |+||.++|.......|
T Consensus        98 ~~t-td~~ea~---------~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pg  158 (432)
T 3pid_A           98 RAT-TDKHDAY---------RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVG  158 (432)
T ss_dssp             EEE-SCHHHHH---------TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTT
T ss_pred             EEE-cCHHHHH---------hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChH
Confidence            432 2332221         4579998876522           24556677778 9999888876555444

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.37  E-value=1.7  Score=34.76  Aligned_cols=97  Identities=12%  Similarity=0.117  Sum_probs=59.7

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCCh-HHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~-~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++|+=+|+                 |..+..+++.+. .+..|+.+|.++ +.++...+..     ...+.++.||+.+
T Consensus         3 ~~~vlI~G~-----------------G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~   60 (153)
T 1id1_A            3 KDHFIVCGH-----------------SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSND   60 (153)
T ss_dssp             CSCEEEECC-----------------SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTS
T ss_pred             CCcEEEECC-----------------CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCC
Confidence            347888887                 666666666653 356899999984 5444433322     2247888999864


Q ss_pred             h--HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          198 S--LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~--l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .  +...   + -...|.|++-.+............+.+.|...++.
T Consensus        61 ~~~l~~a---~-i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           61 SSVLKKA---G-IDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             HHHHHHH---T-TTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             HHHHHHc---C-hhhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence            2  3322   1 35789999876544434444445566666666665

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=90.29  E-value=1.2  Score=40.53  Aligned_cols=89  Identities=11%  Similarity=0.005  Sum_probs=57.6

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-C-cEEEEEeCChH---HHHHHHHHHHHhCCCCcEEEEEc-c
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-S-GCLVACERDAR---SLEVAKKYYERAGVSHKVKIKHG-L  194 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~-~~v~~id~~~~---~~~~A~~~~~~~gl~~~v~~~~g-d  194 (294)
                      .+|-=||+                 |..+..++..+.. + .+|+++|++++   ..+...+.+...|.       .. +
T Consensus        25 m~IgvIG~-----------------G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s   80 (317)
T 4ezb_A           25 TTIAFIGF-----------------GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLD   80 (317)
T ss_dssp             CEEEEECC-----------------SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEES
T ss_pred             CeEEEECc-----------------cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCC
Confidence            47888998                 7777777776643 4 58999999983   22222233334443       22 3


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ..+.         ....|+||+-.+.....+.++.+.+.+++|.+++-
T Consensus        81 ~~e~---------~~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~  119 (317)
T 4ezb_A           81 DVAG---------IACADVVLSLVVGAATKAVAASAAPHLSDEAVFID  119 (317)
T ss_dssp             SGGG---------GGGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             HHHH---------HhcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEE
Confidence            3333         24579999988766666677888888888876653

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=90.00  E-value=0.75  Score=42.69  Aligned_cols=73  Identities=8%  Similarity=-0.027  Sum_probs=47.1

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEE-EEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCL-VACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v-~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      +++|+.||.               |..++.+..+--+...+ .++|+++...+..+.|+...       ++.+|..+...
T Consensus        12 ~vidLFaG~---------------GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~   69 (327)
T 3qv2_A           12 NVIEFFSGI---------------GGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISI   69 (327)
T ss_dssp             EEEEETCTT---------------THHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCH
T ss_pred             EEEEECCCh---------------hHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCH
Confidence            677777777               76666666542112356 79999999998888887421       55677766533


Q ss_pred             HHhhcCCCCceeEEEEcCC
Q 022597          201 ALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~  219 (294)
                      .-..   ...+|+++..++
T Consensus        70 ~~i~---~~~~Dil~ggpP   85 (327)
T 3qv2_A           70 KQIE---SLNCNTWFMSPP   85 (327)
T ss_dssp             HHHH---HTCCCEEEECCC
T ss_pred             HHhc---cCCCCEEEecCC
Confidence            2111   136899987654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=89.84  E-value=1.7  Score=41.91  Aligned_cols=90  Identities=13%  Similarity=0.145  Sum_probs=55.7

Q ss_pred             cHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHH------------HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee
Q 022597          146 GYSSLAIALVLPE-SGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADSLKALILNGEASSYD  212 (294)
Q Consensus       146 G~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~------------~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD  212 (294)
                      |+.+..++..+.. +.+|+++|++++.++..++.            +++.--..++++. .|..+.         -...|
T Consensus        11 G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t-~d~~ea---------~~~aD   80 (450)
T 3gg2_A           11 GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFG-TEIEQA---------VPEAD   80 (450)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE-SCHHHH---------GGGCS
T ss_pred             CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEE-CCHHHH---------HhcCC
Confidence            7777777766532 56899999999987765541            1000001234432 333222         14579


Q ss_pred             EEEEcCCcc----------chHHHHHHHHhcccCCeEEEEecc
Q 022597          213 FAFVDAEKR----------MYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       213 ~vfiD~~~~----------~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +||+-.+.+          ...+.++.+.+.|++|.+++....
T Consensus        81 vViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           81 IIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence            999876533          466777888889998887776544

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=89.59  E-value=0.96  Score=36.36  Aligned_cols=98  Identities=11%  Similarity=0.064  Sum_probs=56.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..++|+=+|+                 |..+..++..+. .+.+|+.+|.+++.++.+++   ..    .+.++.+|..+
T Consensus        18 ~~~~v~IiG~-----------------G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~----g~~~~~~d~~~   73 (155)
T 2g1u_A           18 KSKYIVIFGC-----------------GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF----SGFTVVGDAAE   73 (155)
T ss_dssp             CCCEEEEECC-----------------SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC----CSEEEESCTTS
T ss_pred             CCCcEEEECC-----------------CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC----CCcEEEecCCC
Confidence            4568999998                 555555555542 25689999999986543221   11    24566677643


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      . ..+... ....+|+||+-.+..........+.+.+.+...++.
T Consensus        74 ~-~~l~~~-~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           74 F-ETLKEC-GMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             H-HHHHTT-TGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             H-HHHHHc-CcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            2 222111 124689999877654444444444454555555554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=89.27  E-value=3.4  Score=30.56  Aligned_cols=80  Identities=23%  Similarity=0.156  Sum_probs=49.4

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CC-cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh-
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ES-GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-  197 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~-~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~-  197 (294)
                      ++|+=+|+                 |..+..++..+. .+ .+|+.+|.+++..+.+.    .    ..+++...|..+ 
T Consensus         6 ~~v~I~G~-----------------G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~   60 (118)
T 3ic5_A            6 WNICVVGA-----------------GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDE   60 (118)
T ss_dssp             EEEEEECC-----------------SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCH
T ss_pred             CeEEEECC-----------------CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCH
Confidence            47888898                 445555554442 24 68999999998765543    1    245667777654 


Q ss_pred             -hHHHHhhcCCCCceeEEEEcCCccchHHHHHHH
Q 022597          198 -SLKALILNGEASSYDFAFVDAEKRMYQEYFELL  230 (294)
Q Consensus       198 -~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~  230 (294)
                       .+...     -..+|.||.-.+......+.+.+
T Consensus        61 ~~~~~~-----~~~~d~vi~~~~~~~~~~~~~~~   89 (118)
T 3ic5_A           61 AGLAKA-----LGGFDAVISAAPFFLTPIIAKAA   89 (118)
T ss_dssp             HHHHHH-----TTTCSEEEECSCGGGHHHHHHHH
T ss_pred             HHHHHH-----HcCCCEEEECCCchhhHHHHHHH
Confidence             23333     25789999887654444444433

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=88.83  E-value=2.2  Score=36.13  Aligned_cols=101  Identities=14%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      -|||+|-|+               |-.=-.+...+| +-.|+.+|.--....        .-..+.-.++.||+.+.++.
T Consensus        43 pVlElGLGN---------------GRTydHLRe~~P-~R~I~vfDR~~~~hp--------~~~P~~e~~ilGdi~~tL~~   98 (174)
T 3iht_A           43 PVYELGLGN---------------GRTYHHLRQHVQ-GREIYVFERAVASHP--------DSTPPEAQLILGDIRETLPA   98 (174)
T ss_dssp             CEEEECCTT---------------CHHHHHHHHHCC-SSCEEEEESSCCCCG--------GGCCCGGGEEESCHHHHHHH
T ss_pred             ceEEecCCC---------------ChhHHHHHHhCC-CCcEEEEEeeeccCC--------CCCCchHheecccHHHHHHH
Confidence            699999999               988888888887 788999997443211        01223347899999999876


Q ss_pred             HhhcCCCCceeEEEEcCCc---cc----hHHHHHHHHhcccCCeEEEEecccC
Q 022597          202 LILNGEASSYDFAFVDAEK---RM----YQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       202 l~~~~~~~~fD~vfiD~~~---~~----~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      ....- ..+.-++..|-+-   +.    ....-..+.++|.|||++|-+.-+.
T Consensus        99 ~~~r~-g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl~  150 (174)
T 3iht_A           99 TLERF-GATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRMY  150 (174)
T ss_dssp             HHHHH-CSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCCC
T ss_pred             HHHhc-CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccC
Confidence            42210 3556666666542   21    1222234457999999999877663

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=88.82  E-value=1.9  Score=40.15  Aligned_cols=94  Identities=15%  Similarity=0.074  Sum_probs=61.7

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHH------hCCCCcEEEEEc
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYER------AGVSHKVKIKHG  193 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~------~gl~~~v~~~~g  193 (294)
                      .+|.=||+                 |..+..++..+.. +..|+.++.+++.++..++.-..      ..+..++++. .
T Consensus        30 mkI~VIGa-----------------G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t-~   91 (356)
T 3k96_A           30 HPIAILGA-----------------GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY-C   91 (356)
T ss_dssp             SCEEEECC-----------------SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE-S
T ss_pred             CeEEEECc-----------------cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE-C
Confidence            47888999                 5566666665533 45799999999887665543110      1112234432 2


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      |..+.   +      ...|+||+-.+.....+.++.+.+.++++.+++
T Consensus        92 d~~ea---~------~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivv  130 (356)
T 3k96_A           92 DLKAS---L------EGVTDILIVVPSFAFHEVITRMKPLIDAKTRIA  130 (356)
T ss_dssp             CHHHH---H------TTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEE
T ss_pred             CHHHH---H------hcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            33222   2      468999998887777888889999999887665

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=88.50  E-value=2.2  Score=37.46  Aligned_cols=79  Identities=14%  Similarity=0.117  Sum_probs=51.4

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchH
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ  224 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~  224 (294)
                      |..+..++..+. .+.+|+++|.+++..+.++    +.|...  .+ ..+..+.          ...|+||+-.+.....
T Consensus         9 G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~----~~g~~~--~~-~~~~~~~----------~~~D~vi~av~~~~~~   71 (279)
T 2f1k_A            9 GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV----ERQLVD--EA-GQDLSLL----------QTAKIIFLCTPIQLIL   71 (279)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HTTSCS--EE-ESCGGGG----------TTCSEEEECSCHHHHH
T ss_pred             cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----hCCCCc--cc-cCCHHHh----------CCCCEEEEECCHHHHH
Confidence            555566655542 2458999999998776543    345432  11 2232221          3579999998877777


Q ss_pred             HHHHHHHhcccCCeEEE
Q 022597          225 EYFELLLQLIRVGGIIV  241 (294)
Q Consensus       225 ~~~~~~~~lLkpgG~iv  241 (294)
                      +.++.+.+.+++|.+++
T Consensus        72 ~~~~~l~~~~~~~~~vv   88 (279)
T 2f1k_A           72 PTLEKLIPHLSPTAIVT   88 (279)
T ss_dssp             HHHHHHGGGSCTTCEEE
T ss_pred             HHHHHHHhhCCCCCEEE
Confidence            88888888888887654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.31  E-value=4.5  Score=34.98  Aligned_cols=84  Identities=10%  Similarity=-0.017  Sum_probs=52.6

Q ss_pred             CCCeEEEEccc--cccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          119 GAQRCIEVGVY--TVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       119 ~~~~vLEiG~g--~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .++++|-.|++  .               | .+..+++.+ ..+.+|+.++.+++..+.+.+..+..+- .++.++..|.
T Consensus         6 ~~k~vlVTGasg~~---------------G-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~   68 (266)
T 3oig_A            6 EGRNIVVMGVANKR---------------S-IAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDV   68 (266)
T ss_dssp             TTCEEEEECCCSTT---------------S-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCC
T ss_pred             CCCEEEEEcCCCCC---------------c-HHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCC
Confidence            45688988876  3               3 444555544 2478999999998777777776665543 2688888887


Q ss_pred             hhh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          196 ADS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       196 ~~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .+.  ++.+...-  ..+.+|.++..++
T Consensus        69 ~~~~~v~~~~~~~~~~~g~id~li~~Ag   96 (266)
T 3oig_A           69 TNDAEIETCFASIKEQVGVIHGIAHCIA   96 (266)
T ss_dssp             SSSHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCeeEEEEccc
Confidence            542  22221100  0257899887654

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=88.21  E-value=0.4  Score=44.21  Aligned_cols=103  Identities=15%  Similarity=0.104  Sum_probs=57.1

Q ss_pred             hhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEE-EEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          116 QILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       116 ~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~-~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      ++.++++||-+|+ |.+              |..++.+++..  +++++ +++.++...+ -++.+++.|...   ++. 
T Consensus       164 ~~~~g~~VlV~Ga~G~v--------------G~~aiqlak~~--Ga~vi~~~~~~~~~~~-~~~~~~~lGa~~---vi~-  222 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGV--------------GQAVIQIAAAL--GLRTINVVRDRPDIQK-LSDRLKSLGAEH---VIT-  222 (357)
T ss_dssp             CCCTTCEEEESSTTSHH--------------HHHHHHHHHHH--TCEEEEEECCCSCHHH-HHHHHHHTTCSE---EEE-
T ss_pred             ccCCCCEEEEeCCcCHH--------------HHHHHHHHHHc--CCEEEEEecCccchHH-HHHHHHhcCCcE---EEe-
Confidence            4456789999997 543              87888888876  45554 4555443211 123445567542   222 


Q ss_pred             chhhh-HHHHhhcCC-CCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          194 LAADS-LKALILNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       194 da~~~-l~~l~~~~~-~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                       ..+. ...+.+... .+.+|+||-..+...    ...+.+.|++||.++.-.
T Consensus       223 -~~~~~~~~~~~~~~~~~~~Dvvid~~g~~~----~~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          223 -EEELRRPEMKNFFKDMPQPRLALNCVGGKS----STELLRQLARGGTMVTYG  270 (357)
T ss_dssp             -HHHHHSGGGGGTTSSSCCCSEEEESSCHHH----HHHHHTTSCTTCEEEECC
T ss_pred             -cCcchHHHHHHHHhCCCCceEEEECCCcHH----HHHHHHhhCCCCEEEEEe
Confidence             1110 011111111 125999986665322    235789999999998753

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=88.09  E-value=2.3  Score=38.49  Aligned_cols=94  Identities=13%  Similarity=0.174  Sum_probs=59.2

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCC-------CCcEE--E
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGV-------SHKVK--I  190 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl-------~~~v~--~  190 (294)
                      .+|.=||+                 |..+..++..+. .+.+|+.+|.+++..+..++..   ++       .....  .
T Consensus         5 mki~iiG~-----------------G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   64 (359)
T 1bg6_A            5 KTYAVLGL-----------------GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG---AIIAEGPGLAGTAHPDL   64 (359)
T ss_dssp             CEEEEECC-----------------SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT---SEEEESSSCCEEECCSE
T ss_pred             CeEEEECC-----------------CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcC---CeEEeccccccccccce
Confidence            47888998                 445555554442 2468999999998776554321   21       10000  1


Q ss_pred             EEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          191 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ...+    +.+.     ...+|+||+-.+.....+.++.+.+.+++|.+++..
T Consensus        65 ~~~~----~~~~-----~~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           65 LTSD----IGLA-----VKDADVILIVVPAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EESC----HHHH-----HTTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             ecCC----HHHH-----HhcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence            1122    2222     146899999888777788888888999998876654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=88.09  E-value=1.7  Score=41.55  Aligned_cols=93  Identities=18%  Similarity=0.158  Sum_probs=62.5

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh-
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-  198 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~-  198 (294)
                      .+|+=+|+                 |..+..+++.+. .+..|+.+|.|++.++.+++    .|    +.++.||+.+. 
T Consensus         5 ~~viIiG~-----------------Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~   59 (413)
T 3l9w_A            5 MRVIIAGF-----------------GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMD   59 (413)
T ss_dssp             CSEEEECC-----------------SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHH
T ss_pred             CeEEEECC-----------------CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHH
Confidence            47899998                 556666666553 35789999999998876653    33    56788998653 


Q ss_pred             -HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          199 -LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 -l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                       +...   + -...|.|++-.+........-...+.+.|+..+++
T Consensus        60 ~L~~a---g-i~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           60 LLESA---G-AAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             HHHHT---T-TTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHhc---C-CCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence             3332   2 46789998876644433444444566778766665

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=88.03  E-value=3.8  Score=36.41  Aligned_cols=96  Identities=17%  Similarity=0.203  Sum_probs=60.7

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh---------CCC-----
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA---------GVS-----  185 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~---------gl~-----  185 (294)
                      ++|.=||+|                 ..+..++..+. .+.+|+.+|++++.++.+++.++..         ++.     
T Consensus         5 ~kV~VIGaG-----------------~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~   67 (283)
T 4e12_A            5 TNVTVLGTG-----------------VLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQ   67 (283)
T ss_dssp             CEEEEECCS-----------------HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHH
T ss_pred             CEEEEECCC-----------------HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence            478888885                 45555554432 2579999999999988887764321         121     


Q ss_pred             ---CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc--chHHHHHHHHhcccCCeEEEEec
Q 022597          186 ---HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       186 ---~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~--~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                         .+++. ..+..+.         -...|+|++..+..  ....+++.+.+.++|+.++ ++|
T Consensus        68 ~~~~~i~~-~~~~~~~---------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il-~s~  120 (283)
T 4e12_A           68 KALGGIRY-SDDLAQA---------VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIF-ATN  120 (283)
T ss_dssp             HHHHHCEE-ESCHHHH---------TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEE-EEC
T ss_pred             HHHcCeEE-eCCHHHH---------hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEE-EEC
Confidence               12232 1222221         25689999887643  5677888888889888765 444

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=87.96  E-value=4.1  Score=36.91  Aligned_cols=95  Identities=17%  Similarity=0.085  Sum_probs=61.4

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      .++++=+|+                 |..+..+++.+...+.++.+|.|++.++ +++        ..+.++.||+.+. 
T Consensus       115 ~~~viI~G~-----------------G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~-  167 (336)
T 1lnq_A          115 SRHVVICGW-----------------SESTLECLRELRGSEVFVLAEDENVRKK-VLR--------SGANFVHGDPTRV-  167 (336)
T ss_dssp             -CEEEEESC-----------------CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH--------TTCEEEESCTTSH-
T ss_pred             cCCEEEECC-----------------cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh--------CCcEEEEeCCCCH-
Confidence            358999887                 7777888887754333999999999876 543        2478999998653 


Q ss_pred             HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ..+...+ -+..|.+++-.+.....-..-...+.+.|...++.
T Consensus       168 ~~L~~a~-i~~a~~vi~~~~~d~~n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          168 SDLEKAN-VRGARAVIVDLESDSETIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             HHHHHTC-STTEEEEEECCSSHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             HHHHhcC-hhhccEEEEcCCccHHHHHHHHHHHHHCCCCeEEE
Confidence            2222222 46799998876543322333334566777766655

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=87.75  E-value=2.4  Score=39.64  Aligned_cols=90  Identities=9%  Similarity=0.130  Sum_probs=59.8

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ..+|-=||+                 |..+..++..+. .+..|+++|++++..+.+.    ..|..    . ..+..+.
T Consensus        22 ~mkIgiIGl-----------------G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~----~~g~~----~-~~s~~e~   75 (358)
T 4e21_A           22 SMQIGMIGL-----------------GRMGADMVRRLRKGGHECVVYDLNVNAVQALE----REGIA----G-ARSIEEF   75 (358)
T ss_dssp             CCEEEEECC-----------------SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH----TTTCB----C-CSSHHHH
T ss_pred             CCEEEEECc-----------------hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH----HCCCE----E-eCCHHHH
Confidence            357888998                 667777766653 2568999999998765443    22331    1 2233333


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      +..      ....|+||+-.+.....+.++.+.+.|++|.+|+
T Consensus        76 ~~~------a~~~DvVi~~vp~~~v~~vl~~l~~~l~~g~iiI  112 (358)
T 4e21_A           76 CAK------LVKPRVVWLMVPAAVVDSMLQRMTPLLAANDIVI  112 (358)
T ss_dssp             HHH------SCSSCEEEECSCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred             Hhc------CCCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            332      2456999988776677778888888898887655

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=87.68  E-value=0.57  Score=40.87  Aligned_cols=86  Identities=14%  Similarity=0.203  Sum_probs=54.4

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCC-Cc----EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SG----CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~----~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +|.=||+                 |..+..++..+.. +.    +|+.+|++++..+.+.+.   .|.    ++ ..+..
T Consensus         4 ~i~iIG~-----------------G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~---~g~----~~-~~~~~   58 (247)
T 3gt0_A            4 QIGFIGC-----------------GNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEK---YGL----TT-TTDNN   58 (247)
T ss_dssp             CEEEECC-----------------SHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHH---HCC----EE-CSCHH
T ss_pred             eEEEECc-----------------cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHH---hCC----EE-eCChH
Confidence            6777888                 5566666655432 22    899999999877655432   243    22 22333


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      +.+         ...|+||+-.+.....+.++.+.+.+++|.+++
T Consensus        59 e~~---------~~aDvVilav~~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           59 EVA---------KNADILILSIKPDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             HHH---------HHCSEEEECSCTTTHHHHC---CCSSCTTCEEE
T ss_pred             HHH---------HhCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence            322         347999998876777888888888888887665

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=87.19  E-value=4.7  Score=35.01  Aligned_cols=81  Identities=15%  Similarity=0.160  Sum_probs=52.5

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++++|-.|++.                ..+.++++.+ ..+.+|+.++.+++.++...+.+     ..++.++..|..
T Consensus         6 l~gk~~lVTGas~----------------gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~   64 (255)
T 4eso_A            6 YQGKKAIVIGGTH----------------GMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIA   64 (255)
T ss_dssp             TTTCEEEEETCSS----------------HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTT
T ss_pred             CCCCEEEEECCCC----------------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCC
Confidence            3567899888764                4566666665 34789999999998776555443     246888888876


Q ss_pred             hh--HHHHhhc--CCCCceeEEEEcCC
Q 022597          197 DS--LKALILN--GEASSYDFAFVDAE  219 (294)
Q Consensus       197 ~~--l~~l~~~--~~~~~fD~vfiD~~  219 (294)
                      +.  +..+.+.  ...+.+|.++..++
T Consensus        65 ~~~~v~~~~~~~~~~~g~id~lv~nAg   91 (255)
T 4eso_A           65 DLNEIAVLGAAAGQTLGAIDLLHINAG   91 (255)
T ss_dssp             CHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            52  2222110  01258999987754

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=86.90  E-value=4.6  Score=38.02  Aligned_cols=82  Identities=9%  Similarity=0.162  Sum_probs=52.5

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC--------------CCcEEEEEcchhhhHHHHhhcCCCCce
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------------SHKVKIKHGLAADSLKALILNGEASSY  211 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl--------------~~~v~~~~gda~~~l~~l~~~~~~~~f  211 (294)
                      |+.+..++..+..+.+|+++|++++.++..++    .+.              ..++++ ..+..+.+         ...
T Consensus         9 G~vG~~~A~~La~G~~V~~~d~~~~~~~~l~~----~~~~i~e~~l~~~~~~~~~~l~~-t~~~~~~~---------~~a   74 (402)
T 1dlj_A            9 GYVGLSLGVLLSLQNEVTIVDILPSKVDKINN----GLSPIQDEYIEYYLKSKQLSIKA-TLDSKAAY---------KEA   74 (402)
T ss_dssp             SHHHHHHHHHHTTTSEEEEECSCHHHHHHHHT----TCCSSCCHHHHHHHHHSCCCEEE-ESCHHHHH---------HHC
T ss_pred             CHHHHHHHHHHhCCCEEEEEECCHHHHHHHHc----CCCCcCCCCHHHHHHhccCcEEE-eCCHHHHh---------cCC
Confidence            77888888777556689999999987765432    221              112332 22322222         347


Q ss_pred             eEEEEcCCcc-----------chHHHHHHHHhcccCCeEEEE
Q 022597          212 DFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       212 D~vfiD~~~~-----------~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      |+||+-.+..           ...+.++.+.+ +++|.+++.
T Consensus        75 Dvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~  115 (402)
T 1dlj_A           75 ELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLII  115 (402)
T ss_dssp             SEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEE
T ss_pred             CEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEE
Confidence            9999876543           36677777888 899888776

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=86.49  E-value=1.4  Score=43.33  Aligned_cols=89  Identities=11%  Similarity=0.087  Sum_probs=57.9

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ...+++|+=+|+|.+              |......++..  +.+|+++|++++..+.|+    ..|.    ++  .+..
T Consensus       271 ~l~GktV~IiG~G~I--------------G~~~A~~lka~--Ga~Viv~d~~~~~~~~A~----~~Ga----~~--~~l~  324 (494)
T 3ce6_A          271 LIGGKKVLICGYGDV--------------GKGCAEAMKGQ--GARVSVTEIDPINALQAM----MEGF----DV--VTVE  324 (494)
T ss_dssp             CCTTCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEECSCHHHHHHHH----HTTC----EE--CCHH
T ss_pred             CCCcCEEEEEccCHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHH----HcCC----EE--ecHH
Confidence            356789999999765              66666666665  479999999998776554    3454    22  1222


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +    +     -...|+|+...+.....  -....+.+++||+++-
T Consensus       325 e----~-----l~~aDvVi~atgt~~~i--~~~~l~~mk~ggilvn  359 (494)
T 3ce6_A          325 E----A-----IGDADIVVTATGNKDII--MLEHIKAMKDHAILGN  359 (494)
T ss_dssp             H----H-----GGGCSEEEECSSSSCSB--CHHHHHHSCTTCEEEE
T ss_pred             H----H-----HhCCCEEEECCCCHHHH--HHHHHHhcCCCcEEEE
Confidence            2    2     14689999876533311  1245677899998874

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=86.49  E-value=5.2  Score=36.18  Aligned_cols=96  Identities=18%  Similarity=0.247  Sum_probs=50.0

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH-hCCCCcEEEEEcchhhhHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-AGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~-~gl~~~v~~~~gda~~~l~  200 (294)
                      +|.=||+|.+              |......+...+...+|+.+|++++.++.....+.. ..+...+++..++..+   
T Consensus         2 kI~VIGaG~v--------------G~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a---   64 (304)
T 2v6b_A            2 KVGVVGTGFV--------------GSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSE---   64 (304)
T ss_dssp             EEEEECCSHH--------------HHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGG---
T ss_pred             EEEEECCCHH--------------HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHH---
Confidence            5777898763              433322222222123899999999866532222221 1111234444344322   


Q ss_pred             HHhhcCCCCceeEEEEcCCccc----------------hHHHHHHHHhcccCCeEEEE
Q 022597          201 ALILNGEASSYDFAFVDAEKRM----------------YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~~~~----------------~~~~~~~~~~lLkpgG~ivi  242 (294)
                       +      ...|+|++-.+.+.                ..++++.+.+. .|++++++
T Consensus        65 -~------~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~  114 (304)
T 2v6b_A           65 -L------ADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLV  114 (304)
T ss_dssp             -G------TTCSEEEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEE
T ss_pred             -h------CCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEE
Confidence             1      46799998764211                24555555565 68998765

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=86.48  E-value=6.3  Score=35.40  Aligned_cols=83  Identities=27%  Similarity=0.236  Sum_probs=53.5

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      +.++++.+|-.|.+.               | .+.++++.+ ..+++|+.++++++.++.+.+   +.|  .++..+.+|
T Consensus        25 ~rL~gKvalVTGas~---------------G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~---~~g--~~~~~~~~D   83 (273)
T 4fgs_A           25 QRLNAKIAVITGATS---------------G-IGLAAAKRFVAEGARVFITGRRKDVLDAAIA---EIG--GGAVGIQAD   83 (273)
T ss_dssp             CTTTTCEEEEESCSS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HHC--TTCEEEECC
T ss_pred             chhCCCEEEEeCcCC---------------H-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HcC--CCeEEEEec
Confidence            346788999999876               5 556666655 347899999999988765543   333  356777788


Q ss_pred             hhhh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          195 AADS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       195 a~~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      ..+.  ++.+.+.-  ..++.|.++.+++
T Consensus        84 v~~~~~v~~~~~~~~~~~G~iDiLVNNAG  112 (273)
T 4fgs_A           84 SANLAELDRLYEKVKAEAGRIDVLFVNAG  112 (273)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6542  22221110  1378999987754

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=86.38  E-value=11  Score=33.27  Aligned_cols=84  Identities=18%  Similarity=0.118  Sum_probs=53.0

Q ss_pred             hCCCeEEEEccccccccccccccccCCCc-HHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG-~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ..++++|-.|.+.               | ..+.++++.+ ..+.+|+.++.+++..+.+++..+..+   ++.++..|.
T Consensus        29 l~gk~~lVTGasg---------------~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv   90 (293)
T 3grk_A           29 LQGKRGLILGVAN---------------NRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDV   90 (293)
T ss_dssp             TTTCEEEEECCCS---------------SSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCT
T ss_pred             CCCCEEEEEcCCC---------------CCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCC
Confidence            4667899999762               2 1444555444 236899999999877666666666554   478888887


Q ss_pred             hhh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          196 ADS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       196 ~~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .+.  +..+.+.-  ..+.+|.++..++
T Consensus        91 ~d~~~v~~~~~~~~~~~g~iD~lVnnAG  118 (293)
T 3grk_A           91 ADAASIDAVFETLEKKWGKLDFLVHAIG  118 (293)
T ss_dssp             TCHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            542  22222110  1357999987764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=86.34  E-value=2.2  Score=37.71  Aligned_cols=90  Identities=10%  Similarity=0.138  Sum_probs=56.8

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE--------
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--------  192 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~--------  192 (294)
                      +|.=||+                 |..+..++..+. .+.+|+.+|.+++..+..++    .|+    ++..        
T Consensus         5 ~i~iiG~-----------------G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~----~g~----~~~~~~~~~~~~   59 (316)
T 2ew2_A            5 KIAIAGA-----------------GAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRK----NGL----IADFNGEEVVAN   59 (316)
T ss_dssp             EEEEECC-----------------SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----HCE----EEEETTEEEEEC
T ss_pred             eEEEECc-----------------CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh----CCE----EEEeCCCeeEec
Confidence            7888998                 555555555442 24689999999987665443    232    1111        


Q ss_pred             ---cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          193 ---GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       193 ---gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                         .+..+....      -..+|+||+-.+.....+.++.+.+.++++.+++.
T Consensus        60 ~~~~~~~~~~~~------~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~  106 (316)
T 2ew2_A           60 LPIFSPEEIDHQ------NEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLC  106 (316)
T ss_dssp             CCEECGGGCCTT------SCCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             ceeecchhhccc------CCCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEE
Confidence               011111000      12789999988776778888888888988876654

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=86.33  E-value=2.4  Score=37.42  Aligned_cols=88  Identities=18%  Similarity=0.235  Sum_probs=57.1

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC---CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~---~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+|.=||+                 |..+..++..+.   .+.+|+++|.+++..+.+++    .|...  . ...+..+
T Consensus         7 ~~I~iIG~-----------------G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~--~-~~~~~~~   62 (290)
T 3b1f_A            7 KTIYIAGL-----------------GLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD--E-ATADFKV   62 (290)
T ss_dssp             CEEEEECC-----------------SHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS--E-EESCTTT
T ss_pred             ceEEEEee-----------------CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc--c-ccCCHHH
Confidence            47888998                 555555554432   24689999999987765433    44422  1 1223322


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhc-ccCCeEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQL-IRVGGIIV  241 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~l-LkpgG~iv  241 (294)
                      .         ....|+||+-.+.....+.++.+.+. +++|.+++
T Consensus        63 ~---------~~~aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           63 F---------AALADVIILAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             T---------GGGCSEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             h---------hcCCCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence            2         14689999998877778888888888 88876655

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=86.33  E-value=4.5  Score=34.15  Aligned_cols=86  Identities=16%  Similarity=0.094  Sum_probs=54.0

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh--HHHHhhcCCCCceeEEEEcCCccc
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAEKRM  222 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~--l~~l~~~~~~~~fD~vfiD~~~~~  222 (294)
                      |..+..+++.+. .+..|+.+|.+++.++...+   ..    .+.++.||+.+.  +...   + -...|.|++-.+...
T Consensus         9 G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~---~~----~~~~i~gd~~~~~~l~~a---~-i~~ad~vi~~~~~d~   77 (218)
T 3l4b_C            9 ETTAYYLARSMLSRKYGVVIINKDRELCEEFAK---KL----KATIIHGDGSHKEILRDA---E-VSKNDVVVILTPRDE   77 (218)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH---HS----SSEEEESCTTSHHHHHHH---T-CCTTCEEEECCSCHH
T ss_pred             CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---Hc----CCeEEEcCCCCHHHHHhc---C-cccCCEEEEecCCcH
Confidence            666667666653 35789999999997764332   22    257889998653  3322   1 357899998776544


Q ss_pred             hHHHHHHHHhcccCCeEEEE
Q 022597          223 YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       223 ~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .........+.+.+...++.
T Consensus        78 ~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           78 VNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             HHHHHHHHHHHTSCCCEEEE
T ss_pred             HHHHHHHHHHHHcCCCeEEE
Confidence            44444444555556666654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=86.31  E-value=6  Score=35.37  Aligned_cols=94  Identities=14%  Similarity=0.166  Sum_probs=49.6

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCc--EEEEEeCChHHHHH-HHHHHHHhCCCCcEEEEEc-ch
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESG--CLVACERDARSLEV-AKKYYERAGVSHKVKIKHG-LA  195 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~--~v~~id~~~~~~~~-A~~~~~~~gl~~~v~~~~g-da  195 (294)
                      .+|.=||+|.+              |   ..++..+. .+.  +|+.+|.+++.++. +.+.-+...+....++... +.
T Consensus         8 mkI~IiGaG~v--------------G---~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   70 (319)
T 1lld_A            8 TKLAVIGAGAV--------------G---STLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP   70 (319)
T ss_dssp             CEEEEECCSHH--------------H---HHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG
T ss_pred             CEEEEECCCHH--------------H---HHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH
Confidence            48999999653              3   33332221 123  89999999876652 2221111111113444433 32


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccc----------------hHHHHHHHHhcccCCeEEEE
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRM----------------YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~----------------~~~~~~~~~~lLkpgG~ivi  242 (294)
                       +.         ....|+||+-.....                ..+.++.+.+. .|+++++.
T Consensus        71 -~~---------~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~  122 (319)
T 1lld_A           71 -EI---------CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYML  122 (319)
T ss_dssp             -GG---------GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE
T ss_pred             -HH---------hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEE
Confidence             21         246899998763211                12555566554 78887764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.88  E-value=9.8  Score=33.02  Aligned_cols=106  Identities=18%  Similarity=0.170  Sum_probs=65.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCC------------hHHHHHHHHHHHHhCCC
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERD------------ARSLEVAKKYYERAGVS  185 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~------------~~~~~~A~~~~~~~gl~  185 (294)
                      .++++|-.|++.                ..+.++++.+ ..+.+|+.++.+            .+.++.+.+.++..+  
T Consensus         9 ~gk~vlVTGas~----------------gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   70 (287)
T 3pxx_A            9 QDKVVLVTGGAR----------------GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--   70 (287)
T ss_dssp             TTCEEEEETTTS----------------HHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--
T ss_pred             CCCEEEEeCCCC----------------hHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--
Confidence            457889888864                4566666655 346899999987            666766666666654  


Q ss_pred             CcEEEEEcchhhh--HHHHhhcC--CCCceeEEEEcCCc---------cchH-----------HHHHHHHhcccCCeEEE
Q 022597          186 HKVKIKHGLAADS--LKALILNG--EASSYDFAFVDAEK---------RMYQ-----------EYFELLLQLIRVGGIIV  241 (294)
Q Consensus       186 ~~v~~~~gda~~~--l~~l~~~~--~~~~fD~vfiD~~~---------~~~~-----------~~~~~~~~lLkpgG~iv  241 (294)
                      .++.++..|..+.  +..+...-  ..+.+|.++..++.         +.+.           ...+.+.+.++++|.||
T Consensus        71 ~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv  150 (287)
T 3pxx_A           71 RKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASII  150 (287)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEE
T ss_pred             CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEE
Confidence            4688998887642  22221100  02579999877541         1122           23344567777777766


Q ss_pred             E
Q 022597          242 I  242 (294)
Q Consensus       242 i  242 (294)
                      .
T Consensus       151 ~  151 (287)
T 3pxx_A          151 T  151 (287)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=85.76  E-value=8.5  Score=33.50  Aligned_cols=86  Identities=15%  Similarity=0.113  Sum_probs=54.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCc-HHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSG-YSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG-~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      +.+|++|-.|.+.               + ..+.++++.+. .+++|+.++++++..+.+.+.+++.+- .++.++..|.
T Consensus         4 l~gK~alVTGaa~---------------~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv   67 (256)
T 4fs3_A            4 LENKTYVIMGIAN---------------KRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDV   67 (256)
T ss_dssp             CTTCEEEEECCCS---------------TTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCT
T ss_pred             CCCCEEEEECCCC---------------CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccC
Confidence            3577899988531               1 24455555542 478999999999988888888877653 3577888886


Q ss_pred             hhh--HHHHhhc--CCCCceeEEEEcCC
Q 022597          196 ADS--LKALILN--GEASSYDFAFVDAE  219 (294)
Q Consensus       196 ~~~--l~~l~~~--~~~~~fD~vfiD~~  219 (294)
                      .+.  +..+.+.  ...+..|.++.+++
T Consensus        68 ~~~~~v~~~~~~~~~~~G~iD~lvnnAg   95 (256)
T 4fs3_A           68 QSDEEVINGFEQIGKDVGNIDGVYHSIA   95 (256)
T ss_dssp             TCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEeccc
Confidence            532  1221110  01368999887653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=85.64  E-value=5.4  Score=35.97  Aligned_cols=85  Identities=12%  Similarity=0.027  Sum_probs=59.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+++||=.|++.                ..+.++++.+ ..+.+|+.++.+++..+.+.+.++..+...++.++..|..+
T Consensus         7 ~~k~vlVTGas~----------------gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~   70 (319)
T 3ioy_A            7 AGRTAFVTGGAN----------------GVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS   70 (319)
T ss_dssp             TTCEEEEETTTS----------------THHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC
T ss_pred             CCCEEEEcCCch----------------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC
Confidence            456888888864                4566666665 34789999999999988888888777665579999988765


Q ss_pred             h--HHHHhhc--CCCCceeEEEEcCC
Q 022597          198 S--LKALILN--GEASSYDFAFVDAE  219 (294)
Q Consensus       198 ~--l~~l~~~--~~~~~fD~vfiD~~  219 (294)
                      .  +..+...  ...+.+|.++..++
T Consensus        71 ~~~v~~~~~~~~~~~g~id~lv~nAg   96 (319)
T 3ioy_A           71 REGFKMAADEVEARFGPVSILCNNAG   96 (319)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            2  2222110  01367999998765

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=85.46  E-value=2.4  Score=49.42  Aligned_cols=103  Identities=10%  Similarity=0.081  Sum_probs=67.1

Q ss_pred             hhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      +.++++||-.|. |.+              |..++.+++..  +++|++++.+++..+.+++.+...|..+   ++....
T Consensus      1665 l~~Ge~VLI~gaaGgV--------------G~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lga~~---v~~~~~ 1725 (2512)
T 2vz8_A         1665 MQPGESVLIHSGSGGV--------------GQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLDETC---FANSRD 1725 (2512)
T ss_dssp             CCTTCEEEETTTTSHH--------------HHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCCSTT---EEESSS
T ss_pred             CCCCCEEEEEeCChHH--------------HHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCCceE---EecCCC
Confidence            456789998874 543              77777888876  5799999999988777766443334432   222222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+..+.+........+|+||--..    .+.++..++.|++||.++.
T Consensus      1726 ~~~~~~i~~~t~g~GvDvVld~~g----~~~l~~~l~~L~~~Gr~V~ 1768 (2512)
T 2vz8_A         1726 TSFEQHVLRHTAGKGVDLVLNSLA----EEKLQASVRCLAQHGRFLE 1768 (2512)
T ss_dssp             SHHHHHHHHTTTSCCEEEEEECCC----HHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHhcCCCCceEEEECCC----chHHHHHHHhcCCCcEEEE
Confidence            233333322222346999986543    4568889999999999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=85.45  E-value=7.5  Score=34.61  Aligned_cols=94  Identities=18%  Similarity=0.142  Sum_probs=58.0

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHH-------hCCC-------
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYER-------AGVS-------  185 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~-------~gl~-------  185 (294)
                      ++|.=||+|.                 .+..++..+. .+..|+.+|.+++.++.+++.+++       .|.-       
T Consensus        16 ~~I~VIG~G~-----------------mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~   78 (302)
T 1f0y_A           16 KHVTVIGGGL-----------------MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGD   78 (302)
T ss_dssp             CEEEEECCSH-----------------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred             CEEEEECCCH-----------------HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccch
Confidence            4788899954                 4444444432 256899999999998877654432       2321       


Q ss_pred             -------CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc--hHHHHHHHHhcccCCeEEE
Q 022597          186 -------HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       186 -------~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~--~~~~~~~~~~lLkpgG~iv  241 (294)
                             .++++. .|..+   .      -...|+||+-.+...  ...+++.+.+.++++.+++
T Consensus        79 ~~~~~~~~~i~~~-~~~~~---~------~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~  133 (302)
T 1f0y_A           79 EFVEKTLSTIATS-TDAAS---V------VHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFA  133 (302)
T ss_dssp             HHHHHHHHTEEEE-SCHHH---H------TTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEE
T ss_pred             hhHHHHHhceEEe-cCHHH---h------hcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence                   124432 22221   1      256899998775332  4577888888888887654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=85.37  E-value=1.2  Score=41.86  Aligned_cols=43  Identities=23%  Similarity=0.268  Sum_probs=33.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHH
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKK  177 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~  177 (294)
                      .+++|+=+|+|.+              |.....+++.++  .+|+.+|.+++..+.+++
T Consensus       171 ~g~~V~ViGaG~i--------------G~~aa~~a~~~G--a~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVA--------------GLQAIATAKRLG--AVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHH--------------HHHHHHHHHHTT--CEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence            5789999999864              777777777764  689999999887666543

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=85.28  E-value=7.2  Score=34.64  Aligned_cols=84  Identities=13%  Similarity=0.045  Sum_probs=52.0

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++|-.|.+.+              ...+.++++.+ ..+.+|+.++.+++..+.+.+..+..+   ++.++..|..+
T Consensus        29 ~~k~vlVTGasg~--------------~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d   91 (296)
T 3k31_A           29 EGKKGVIIGVAND--------------KSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSD   91 (296)
T ss_dssp             TTCEEEEECCCST--------------TSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTC
T ss_pred             CCCEEEEEeCCCC--------------CCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCC
Confidence            4568999887410              14455555554 237899999999877776666666654   35777888754


Q ss_pred             h--HHHHhhcC--CCCceeEEEEcCC
Q 022597          198 S--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       198 ~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .  ++.+.+.-  ..+.+|.++..++
T Consensus        92 ~~~v~~~~~~~~~~~g~iD~lVnnAG  117 (296)
T 3k31_A           92 AESVDNMFKVLAEEWGSLDFVVHAVA  117 (296)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            2  22221110  0257999987764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=85.25  E-value=1.8  Score=38.76  Aligned_cols=87  Identities=14%  Similarity=0.130  Sum_probs=56.8

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-C---cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-S---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~---~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ++|-=||+                 |..+..++..+.. +   .+|+.+|++++..+.+.+.   .|    +++ ..+..
T Consensus         4 ~~I~iIG~-----------------G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~---~g----i~~-~~~~~   58 (280)
T 3tri_A            4 SNITFIGG-----------------GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK---CG----VHT-TQDNR   58 (280)
T ss_dssp             SCEEEESC-----------------SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT---TC----CEE-ESCHH
T ss_pred             CEEEEEcc-----------------cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH---cC----CEE-eCChH
Confidence            46778899                 4455555554422 2   2799999999877655442   23    333 22332


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhc-ccCCeEEE
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQL-IRVGGIIV  241 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~l-LkpgG~iv  241 (294)
                      +.   +      ...|+||+-.......+.++.+.+. ++++-+++
T Consensus        59 ~~---~------~~aDvVilav~p~~~~~vl~~l~~~~l~~~~iii   95 (280)
T 3tri_A           59 QG---A------LNADVVVLAVKPHQIKMVCEELKDILSETKILVI   95 (280)
T ss_dssp             HH---H------SSCSEEEECSCGGGHHHHHHHHHHHHHTTTCEEE
T ss_pred             HH---H------hcCCeEEEEeCHHHHHHHHHHHHhhccCCCeEEE
Confidence            22   2      4679999998777788899998888 87765554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=84.65  E-value=8.5  Score=37.06  Aligned_cols=104  Identities=16%  Similarity=0.242  Sum_probs=63.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHH------------HHHhCCC
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKY------------YERAGVS  185 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~------------~~~~gl~  185 (294)
                      +.-++-=||.                 |+.++.+|..+.. +-+|+++|++++.++..++.            +++.-..
T Consensus         7 ~~~~~~vIGl-----------------G~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~   69 (446)
T 4a7p_A            7 GSVRIAMIGT-----------------GYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKA   69 (446)
T ss_dssp             CCCEEEEECC-----------------SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHT
T ss_pred             CceEEEEEcC-----------------CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhccc
Confidence            4457778888                 7788877776643 56899999999987655431            0000001


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-----------chHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-----------~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                      .++++. .|..+.+         ...|+||+-.+.+           ...+.++.+.+.|++|.++|.......|
T Consensus        70 g~l~~t-td~~ea~---------~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pg  134 (446)
T 4a7p_A           70 GRLSFT-TDLAEGV---------KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVG  134 (446)
T ss_dssp             TCEEEE-SCHHHHH---------TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTT
T ss_pred             CCEEEE-CCHHHHH---------hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCch
Confidence            234432 3332221         4579998874422           2566777888899999888765543333

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=84.07  E-value=11  Score=33.38  Aligned_cols=106  Identities=15%  Similarity=0.212  Sum_probs=64.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHH-HHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~-~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      .++++|-.|.+                |..+.++++.+. .+.+|+.++.+++. .+...+.++..|  .++.++.+|..
T Consensus        46 ~gk~vlVTGas----------------~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~  107 (291)
T 3ijr_A           46 KGKNVLITGGD----------------SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLS  107 (291)
T ss_dssp             TTCEEEEETTT----------------SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTT
T ss_pred             CCCEEEEeCCC----------------cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCC
Confidence            45689988876                445666666653 46899999998763 444555555544  46889998876


Q ss_pred             hh--HHHHhhcC--CCCceeEEEEcCCc------------cch-----------HHHHHHHHhcccCCeEEEE
Q 022597          197 DS--LKALILNG--EASSYDFAFVDAEK------------RMY-----------QEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       197 ~~--l~~l~~~~--~~~~fD~vfiD~~~------------~~~-----------~~~~~~~~~lLkpgG~ivi  242 (294)
                      +.  ++.+...-  ..+.+|.++..++.            +.+           ....+.+.+.++++|.||.
T Consensus       108 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~  180 (291)
T 3ijr_A          108 DEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIIN  180 (291)
T ss_dssp             SHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEE
Confidence            52  22221100  02578999876531            111           2334455677888887664

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=83.96  E-value=5.4  Score=34.76  Aligned_cols=85  Identities=16%  Similarity=0.151  Sum_probs=57.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+++|-.|+.                |..+..+++.+. .+.+|+.++.+++..+...+.++..|...++.++.+|..+
T Consensus        31 ~~k~vlVTGas----------------ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~   94 (279)
T 1xg5_A           31 RDRLALVTGAS----------------GGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN   94 (279)
T ss_dssp             TTCEEEEESTT----------------SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC
T ss_pred             CCCEEEEECCC----------------chHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC
Confidence            45688888875                566677666552 4689999999998887777777777766678888888754


Q ss_pred             h--HHHHhhcC--CCCceeEEEEcCC
Q 022597          198 S--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       198 ~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .  +..+...-  ..+.+|.+|..++
T Consensus        95 ~~~v~~~~~~~~~~~g~iD~vi~~Ag  120 (279)
T 1xg5_A           95 EEDILSMFSAIRSQHSGVDICINNAG  120 (279)
T ss_dssp             HHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            2  22221100  0247899987654

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=83.85  E-value=3.8  Score=37.46  Aligned_cols=98  Identities=15%  Similarity=0.104  Sum_probs=50.7

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH-HHHHHHHhCCCCcEEEEEcchhhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV-AKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~-A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +.+|.=||+|.+              |+.........+...+|+.+|++++.++- +....+...+...+++..++..+ 
T Consensus         7 ~~KI~IiGaG~v--------------G~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a-   71 (318)
T 1y6j_A            7 RSKVAIIGAGFV--------------GASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD-   71 (318)
T ss_dssp             CCCEEEECCSHH--------------HHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG-
T ss_pred             CCEEEEECCCHH--------------HHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHH-
Confidence            457888999764              54433333332223589999999876552 22221211122356666544322 


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccc----------------hHHHHHHHHhcccCCeEEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKRM----------------YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~----------------~~~~~~~~~~lLkpgG~ivi  242 (294)
                         +      ...|+|++-++.+.                ..++.+.+.+. .|++++++
T Consensus        72 ---~------~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv  121 (318)
T 1y6j_A           72 ---V------KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILV  121 (318)
T ss_dssp             ---G------TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEE
T ss_pred             ---h------CCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEE
Confidence               1      46799998765211                13333333344 69999887

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=83.84  E-value=8.8  Score=32.88  Aligned_cols=84  Identities=18%  Similarity=0.087  Sum_probs=53.1

Q ss_pred             hCCCeEEEEccc-cccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          118 LGAQRCIEVGVY-TVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEiG~g-~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++||=.|+. +               |..+..+++.+ ..+.+|+.++.+.+..+.+++..+..+   ++.++..|.
T Consensus        12 ~~~k~vlITGa~~~---------------~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv   73 (271)
T 3ek2_A           12 LDGKRILLTGLLSN---------------RSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDV   73 (271)
T ss_dssp             TTTCEEEECCCCST---------------TSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCT
T ss_pred             cCCCEEEEeCCCCC---------------CcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCC
Confidence            356799999975 2               33455555554 246899999999776666666666544   377888887


Q ss_pred             hhh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          196 ADS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       196 ~~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .+.  ++.+...-  ..++.|.++..++
T Consensus        74 ~~~~~v~~~~~~~~~~~g~id~lv~nAg  101 (271)
T 3ek2_A           74 ADDAQIDALFASLKTHWDSLDGLVHSIG  101 (271)
T ss_dssp             TCHHHHHHHHHHHHHHCSCEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            542  22221100  1368999987654

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=83.59  E-value=3.7  Score=35.68  Aligned_cols=87  Identities=11%  Similarity=0.068  Sum_probs=54.9

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcE-EEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~-v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+|.=||+|                 ..+..++..+.. +.+ |+.+|.+++..+.+.+.   .|.    .+ ..+..+.
T Consensus        11 m~i~iiG~G-----------------~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~---~g~----~~-~~~~~~~   65 (266)
T 3d1l_A           11 TPIVLIGAG-----------------NLATNLAKALYRKGFRIVQVYSRTEESARELAQK---VEA----EY-TTDLAEV   65 (266)
T ss_dssp             CCEEEECCS-----------------HHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHH---TTC----EE-ESCGGGS
T ss_pred             CeEEEEcCC-----------------HHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHH---cCC----ce-eCCHHHH
Confidence            478888985                 445555444321 345 88999999876654432   232    22 2333222


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                               ....|+||+-.+.....+.++.+.+.+++|.+++
T Consensus        66 ---------~~~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv   99 (266)
T 3d1l_A           66 ---------NPYAKLYIVSLKDSAFAELLQGIVEGKREEALMV   99 (266)
T ss_dssp             ---------CSCCSEEEECCCHHHHHHHHHHHHTTCCTTCEEE
T ss_pred             ---------hcCCCEEEEecCHHHHHHHHHHHHhhcCCCcEEE
Confidence                     2468999998876666788888888888876554

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=83.19  E-value=6.4  Score=34.75  Aligned_cols=85  Identities=13%  Similarity=0.146  Sum_probs=54.9

Q ss_pred             CeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          121 QRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       121 ~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+|.=||+ |.                 .+..++..+. .+.+|+.+|.+++..+.+++    .|+.    +  .+..+.
T Consensus        12 m~I~iIG~tG~-----------------mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~----~g~~----~--~~~~~~   64 (286)
T 3c24_A           12 KTVAILGAGGK-----------------MGARITRKIHDSAHHLAAIEIAPEGRDRLQG----MGIP----L--TDGDGW   64 (286)
T ss_dssp             CEEEEETTTSH-----------------HHHHHHHHHHHSSSEEEEECCSHHHHHHHHH----TTCC----C--CCSSGG
T ss_pred             CEEEEECCCCH-----------------HHHHHHHHHHhCCCEEEEEECCHHHHHHHHh----cCCC----c--CCHHHH
Confidence            37888999 76                 3333333331 24689999999987765543    3432    1  122222


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                               ....|+||+-.+.....+.++.+.+.+++|.+++
T Consensus        65 ---------~~~aDvVi~av~~~~~~~v~~~l~~~l~~~~ivv   98 (286)
T 3c24_A           65 ---------IDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVL   98 (286)
T ss_dssp             ---------GGTCSEEEECSCHHHHHHHHHHHGGGSCTTCEEE
T ss_pred             ---------hcCCCEEEEcCCchHHHHHHHHHHHhCCCCCEEE
Confidence                     2468999998877667788888888888876554

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=83.17  E-value=7.1  Score=33.24  Aligned_cols=83  Identities=23%  Similarity=0.124  Sum_probs=54.3

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC--CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~--~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.+++|=.|+ +               |..+.++++.+.  .+.+|+.++.+++..+...+.++..+  .++.++.+|..
T Consensus         3 ~~k~vlITGa-s---------------ggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~   64 (276)
T 1wma_A            3 GIHVALVTGG-N---------------KGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDID   64 (276)
T ss_dssp             CCCEEEESSC-S---------------SHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTT
T ss_pred             CCCEEEEeCC-C---------------cHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCC
Confidence            3457777775 4               667777777653  36899999999988777766666654  46888888876


Q ss_pred             hh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          197 DS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       197 ~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      +.  +..+...-  ..+.+|.+|..++
T Consensus        65 ~~~~~~~~~~~~~~~~g~id~li~~Ag   91 (276)
T 1wma_A           65 DLQSIRALRDFLRKEYGGLDVLVNNAG   91 (276)
T ss_dssp             CHHHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            42  22221100  0247999987654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=83.12  E-value=1.8  Score=41.22  Aligned_cols=102  Identities=17%  Similarity=0.166  Sum_probs=61.1

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH------  192 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~------  192 (294)
                      ++.+|+=+|+|.+              |.....++..+  +++|+++|.+++..+.+++    .|.    ++..      
T Consensus       183 ~~~kV~ViG~G~i--------------G~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~----lGa----~~~~l~~~~~  238 (381)
T 3p2y_A          183 KPASALVLGVGVA--------------GLQALATAKRL--GAKTTGYDVRPEVAEQVRS----VGA----QWLDLGIDAA  238 (381)
T ss_dssp             CCCEEEEESCSHH--------------HHHHHHHHHHH--TCEEEEECSSGGGHHHHHH----TTC----EECCCC----
T ss_pred             CCCEEEEECchHH--------------HHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----eEEecccccc
Confidence            5679999999864              77777777776  4799999999987776654    232    1111      


Q ss_pred             ---cch-----------hhhHHHHhhcCCCCceeEEEEcC---CccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          193 ---GLA-----------ADSLKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       193 ---gda-----------~~~l~~l~~~~~~~~fD~vfiD~---~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                         +.+           .+.+.+.     -...|+|+.-.   ......-+-+...+.++||++|+=-.+-..|
T Consensus       239 ~~~gya~~~~~~~~~~~~~~l~e~-----l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG  307 (381)
T 3p2y_A          239 GEGGYARELSEAERAQQQQALEDA-----ITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGG  307 (381)
T ss_dssp             ---------CHHHHHHHHHHHHHH-----HTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTC
T ss_pred             ccccchhhhhHHHHhhhHHHHHHH-----HhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCC
Confidence               000           1223333     26789998653   1111111235677888998877643333333

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=83.09  E-value=2  Score=39.02  Aligned_cols=94  Identities=12%  Similarity=0.061  Sum_probs=57.1

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-C-------cEEEEEeCChH-----HHHHHHHHHHHh----C
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-S-------GCLVACERDAR-----SLEVAKKYYERA----G  183 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~-------~~v~~id~~~~-----~~~~A~~~~~~~----g  183 (294)
                      .+|.=||+|                 ..+..++..+.. +       ..|+.+|.+++     ..+..++.-...    |
T Consensus         9 mkI~iIG~G-----------------~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~   71 (354)
T 1x0v_A            9 KKVCIVGSG-----------------NWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPG   71 (354)
T ss_dssp             EEEEEECCS-----------------HHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTT
T ss_pred             CeEEEECCC-----------------HHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCc
Confidence            378889995                 444555444422 3       47999999987     655443311000    1


Q ss_pred             --CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          184 --VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       184 --l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                        +..++++. .+..+.   .      ...|+||+-.+.....+.++.+.+.++++.+++
T Consensus        72 ~~~~~~~~~~-~~~~~~---~------~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv  121 (354)
T 1x0v_A           72 HKLPPNVVAV-PDVVQA---A------EDADILIFVVPHQFIGKICDQLKGHLKANATGI  121 (354)
T ss_dssp             CCCCTTEEEE-SSHHHH---H------TTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEE
T ss_pred             ccCccCeEEE-cCHHHH---H------cCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEE
Confidence              12233332 232222   1      468999999877777888888888898887654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=83.07  E-value=5.8  Score=35.50  Aligned_cols=89  Identities=12%  Similarity=0.095  Sum_probs=54.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+++|+=||+|.+              |......+...  +.+|+.+|.+++..+.+    +..|.    +...  . +
T Consensus       153 l~g~~v~IiG~G~i--------------G~~~a~~l~~~--G~~V~~~dr~~~~~~~~----~~~g~----~~~~--~-~  205 (293)
T 3d4o_A          153 IHGANVAVLGLGRV--------------GMSVARKFAAL--GAKVKVGARESDLLARI----AEMGM----EPFH--I-S  205 (293)
T ss_dssp             STTCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHH----HHTTS----EEEE--G-G
T ss_pred             CCCCEEEEEeeCHH--------------HHHHHHHHHhC--CCEEEEEECCHHHHHHH----HHCCC----eecC--h-h
Confidence            45789999999653              44444444444  46999999998765433    23343    2221  1 2


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      .+.++     -...|+|+...+.....+   .....++||++++
T Consensus       206 ~l~~~-----l~~aDvVi~~~p~~~i~~---~~l~~mk~~~~li  241 (293)
T 3d4o_A          206 KAAQE-----LRDVDVCINTIPALVVTA---NVLAEMPSHTFVI  241 (293)
T ss_dssp             GHHHH-----TTTCSEEEECCSSCCBCH---HHHHHSCTTCEEE
T ss_pred             hHHHH-----hcCCCEEEECCChHHhCH---HHHHhcCCCCEEE
Confidence            23333     367899999876433222   2456789988765

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=83.04  E-value=12  Score=32.27  Aligned_cols=85  Identities=13%  Similarity=0.014  Sum_probs=53.0

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++|-.|+.                |..+.++++.+. .+.+|+.++.+++..+.+.+.++......++.++.+|..+
T Consensus         6 ~~k~vlVTGas----------------~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   69 (267)
T 2gdz_A            6 NGKVALVTGAA----------------QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD   69 (267)
T ss_dssp             TTCEEEEETTT----------------SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS
T ss_pred             CCCEEEEECCC----------------CcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence            45688888875                566677766653 4689999999988766554444332112468888888764


Q ss_pred             h--HHHHhhcC--CCCceeEEEEcCC
Q 022597          198 S--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       198 ~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .  +..+...-  ..+.+|.++..++
T Consensus        70 ~~~v~~~~~~~~~~~g~id~lv~~Ag   95 (267)
T 2gdz_A           70 QQQLRDTFRKVVDHFGRLDILVNNAG   95 (267)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            2  22221100  0257899998765

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=82.82  E-value=8.9  Score=35.60  Aligned_cols=96  Identities=11%  Similarity=0.122  Sum_probs=56.8

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCC--CcEEEEEe---CChHHHHHHHHHHHHhCCC------Cc--E
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE--SGCLVACE---RDARSLEVAKKYYERAGVS------HK--V  188 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~--~~~v~~id---~~~~~~~~A~~~~~~~gl~------~~--v  188 (294)
                      +|.=||+                 |..+..++..+..  +..|+.++   .+++.++.+   +++.|+.      ..  +
T Consensus         4 kI~ViGa-----------------G~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~---~~~~g~~~~~~~~~~~~~   63 (404)
T 3c7a_A            4 KVCVCGG-----------------GNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKA---LGADELTVIVNEKDGTQT   63 (404)
T ss_dssp             EEEEECC-----------------SHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHH---HTTSCEEEEEECSSSCEE
T ss_pred             eEEEECC-----------------CHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHH---HhhccceeeeecCCCccc
Confidence            6778888                 6666666666632  56899999   666655432   2332210      01  1


Q ss_pred             EEEEc-c-hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          189 KIKHG-L-AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       189 ~~~~g-d-a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ..... . ....+.+.     ....|+||+-.+.....+.++.+.+.++++.+|+.
T Consensus        64 ~~~~~~~~~~~~~~~a-----~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           64 EVKSRPKVITKDPEIA-----ISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             EEEECCSEEESCHHHH-----HTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEE
T ss_pred             eeeccceEEeCCHHHH-----hCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEE
Confidence            11000 0 11112221     14689999998877788899999999998875543

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=82.71  E-value=15  Score=33.42  Aligned_cols=74  Identities=18%  Similarity=0.116  Sum_probs=43.3

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH-HHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV-AKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~-A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      +|.=||+|.+              |+.........+...+++.+|++++.++. +........+...+++..++..+.  
T Consensus         2 KI~IiGaG~v--------------G~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~--   65 (310)
T 2xxj_A            2 KVGIVGSGMV--------------GSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDL--   65 (310)
T ss_dssp             EEEEECCSHH--------------HHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGG--
T ss_pred             EEEEECCCHH--------------HHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHh--
Confidence            5677888764              55444333333334689999999887663 333333221223566665554322  


Q ss_pred             HHhhcCCCCceeEEEEcCC
Q 022597          201 ALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~  219 (294)
                              ...|+|++-++
T Consensus        66 --------~~aD~Vii~ag   76 (310)
T 2xxj_A           66 --------EGARAVVLAAG   76 (310)
T ss_dssp             --------TTEEEEEECCC
T ss_pred             --------CCCCEEEECCC
Confidence                    56899998654

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=82.69  E-value=2.5  Score=46.40  Aligned_cols=98  Identities=12%  Similarity=0.025  Sum_probs=58.6

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc--EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~--~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      +++|+-||.               |..++.+..+   +.  .+.++|+++.+++.-+.|+.      ...++.+|..+.+
T Consensus       853 ~viDLFsG~---------------GGlslGfe~A---G~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~  908 (1330)
T 3av4_A          853 RTLDVFSGC---------------GGLSEGFHQA---GISETLWAIEMWDPAAQAFRLNNP------GTTVFTEDCNVLL  908 (1330)
T ss_dssp             EEEEETCTT---------------SHHHHHHHHT---TSEEEEEEECCSHHHHHHHHHHCT------TSEEECSCHHHHH
T ss_pred             eEEecccCc---------------cHHHHHHHHC---CCCceEEEEECCHHHHHHHHHhCC------CCcEeeccHHHHh
Confidence            566666666               6566655553   32  57899999998877666542      2457778887665


Q ss_pred             HHHhh---------cC-CCCceeEEEEcCC--------cc---c--------hHHHHHHHHhcccCCeEEEEecc
Q 022597          200 KALIL---------NG-EASSYDFAFVDAE--------KR---M--------YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       200 ~~l~~---------~~-~~~~fD~vfiD~~--------~~---~--------~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .....         .. ..+.+|+++..++        +.   .        +..+++ +...++|. ++++.||
T Consensus       909 ~~~~~gdi~~~~~~~lp~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~L~~~~lr-iv~~~rPk-~fv~ENV  981 (1330)
T 3av4_A          909 KLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLS-YCDYYRPR-FFLLENV  981 (1330)
T ss_dssp             HHHTTTCSBCSSCCBCCCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHSHHHHHHH-HHHHHCCS-EEEEEEE
T ss_pred             HhhhccchhhhhhhhccccCccceEEecCCCcccccccccccccccchhhHHHHHHHH-HHHHhcCc-EEEEecc
Confidence            43320         00 1246899986644        11   0        222333 33556786 7888998

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=82.61  E-value=2.8  Score=38.01  Aligned_cols=91  Identities=7%  Similarity=0.050  Sum_probs=57.2

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCC---CcEEE----E
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS---HKVKI----K  191 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~---~~v~~----~  191 (294)
                      ..+|.=||+|.                 .+..++..+. .+..|+.+ .+++.++..++    .|+.   ...++    .
T Consensus        19 ~~kI~IiGaGa-----------------~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~----~g~~~~~~~~~~~~~~~   76 (318)
T 3hwr_A           19 GMKVAIMGAGA-----------------VGCYYGGMLARAGHEVILI-ARPQHVQAIEA----TGLRLETQSFDEQVKVS   76 (318)
T ss_dssp             -CEEEEESCSH-----------------HHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH----HCEEEECSSCEEEECCE
T ss_pred             CCcEEEECcCH-----------------HHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh----CCeEEEcCCCcEEEeee
Confidence            34899999954                 4444444442 24589999 88887765543    2321   00111    1


Q ss_pred             -EcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          192 -HGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       192 -~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                       ..+..    .      ...+|+||+-.......+.++.+.+.++++.+++.
T Consensus        77 ~~~~~~----~------~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~  118 (318)
T 3hwr_A           77 ASSDPS----A------VQGADLVLFCVKSTDTQSAALAMKPALAKSALVLS  118 (318)
T ss_dssp             EESCGG----G------GTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEE
T ss_pred             eeCCHH----H------cCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEE
Confidence             11211    1      25799999988877788899999999999987664

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=82.26  E-value=6.4  Score=34.23  Aligned_cols=83  Identities=12%  Similarity=0.026  Sum_probs=57.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++|-.|++                |..+.++++.+ ..+.+|+.++.+++..+...+.++..+...++.++..|..+
T Consensus         9 ~~k~~lVTGas----------------~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~   72 (267)
T 3t4x_A            9 KGKTALVTGST----------------AGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT   72 (267)
T ss_dssp             TTCEEEETTCS----------------SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS
T ss_pred             CCCEEEEeCCC----------------cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC
Confidence            45688888875                45666666665 34689999999999888777777766555578888888754


Q ss_pred             h--HHHHhhcCCCCceeEEEEcCC
Q 022597          198 S--LKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       198 ~--l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      .  +..+.+.  .+..|.++..++
T Consensus        73 ~~~~~~~~~~--~g~id~lv~nAg   94 (267)
T 3t4x_A           73 EQGCQDVIEK--YPKVDILINNLG   94 (267)
T ss_dssp             HHHHHHHHHH--CCCCSEEEECCC
T ss_pred             HHHHHHHHHh--cCCCCEEEECCC
Confidence            2  3333322  367999987764

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=82.09  E-value=11  Score=36.20  Aligned_cols=96  Identities=22%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHH-------hC-C------C
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYER-------AG-V------S  185 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~-------~g-l------~  185 (294)
                      ++|.-||+                 |..+..++..+. .+..|+.+|.+++.++.+++.++.       .| +      .
T Consensus        38 ~kV~VIGa-----------------G~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~  100 (463)
T 1zcj_A           38 SSVGVLGL-----------------GTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAK  100 (463)
T ss_dssp             CEEEEECC-----------------SHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             CEEEEECc-----------------CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            47888999                 445555555442 256899999999998887764431       11 0      1


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc--hHHHHHHHHhcccCCeEEEEecc
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~--~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ...++ ..+. +.         -...|+||+-.+...  ...+++.+.+.++||.+++ +|.
T Consensus       101 ~~~~i-~~~~-~~---------~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~-snT  150 (463)
T 1zcj_A          101 PKLRF-SSST-KE---------LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLC-TNT  150 (463)
T ss_dssp             CCEEE-ESCG-GG---------GTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEE-ECC
T ss_pred             HHhhh-cCCH-HH---------HCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEE-eCC
Confidence            11233 3343 21         256899998875322  3677888888888887665 454

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=81.87  E-value=2.6  Score=36.94  Aligned_cols=85  Identities=14%  Similarity=-0.010  Sum_probs=52.7

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA  201 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~  201 (294)
                      +|.=||+|.                 .+..++..+..+.+|+.+|.+++..+.+.+.    |..    ...  ..+.   
T Consensus         3 ~i~iiG~G~-----------------~G~~~a~~l~~g~~V~~~~~~~~~~~~~~~~----g~~----~~~--~~~~---   52 (289)
T 2cvz_A            3 KVAFIGLGA-----------------MGYPMAGHLARRFPTLVWNRTFEKALRHQEE----FGS----EAV--PLER---   52 (289)
T ss_dssp             CEEEECCST-----------------THHHHHHHHHTTSCEEEECSSTHHHHHHHHH----HCC----EEC--CGGG---
T ss_pred             eEEEEcccH-----------------HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHC----CCc----ccC--HHHH---
Confidence            577788854                 4444444332256799999999877655432    332    111  2121   


Q ss_pred             HhhcCCCCceeEEEEcCCcc-chHHHHHHHHhcccCCeEEEE
Q 022597          202 LILNGEASSYDFAFVDAEKR-MYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       202 l~~~~~~~~fD~vfiD~~~~-~~~~~~~~~~~lLkpgG~ivi  242 (294)
                            ....|+||+-.+.. .....++.+.+.+++|.+++.
T Consensus        53 ------~~~~D~vi~~v~~~~~~~~v~~~l~~~l~~~~~vv~   88 (289)
T 2cvz_A           53 ------VAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVD   88 (289)
T ss_dssp             ------GGGCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEE
T ss_pred             ------HhCCCEEEEeCCChHHHHHHHHHHHhhCCCCCEEEE
Confidence                  14689999987644 366677777788888876653

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=81.74  E-value=11  Score=33.80  Aligned_cols=89  Identities=15%  Similarity=0.186  Sum_probs=54.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+++|+=||+|.+              |......+...  +.+|+.+|.+++..+.+.    ..|.    +...  . +
T Consensus       155 l~g~~v~IiG~G~i--------------G~~~a~~l~~~--G~~V~~~d~~~~~~~~~~----~~g~----~~~~--~-~  207 (300)
T 2rir_A          155 IHGSQVAVLGLGRT--------------GMTIARTFAAL--GANVKVGARSSAHLARIT----EMGL----VPFH--T-D  207 (300)
T ss_dssp             STTSEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTC----EEEE--G-G
T ss_pred             CCCCEEEEEcccHH--------------HHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HCCC----eEEc--h-h
Confidence            45689999999653              44444444444  579999999987554332    2342    2222  1 2


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      .+.++     -...|+|+...+.....   +.....++||++++
T Consensus       208 ~l~~~-----l~~aDvVi~~~p~~~i~---~~~~~~mk~g~~li  243 (300)
T 2rir_A          208 ELKEH-----VKDIDICINTIPSMILN---QTVLSSMTPKTLIL  243 (300)
T ss_dssp             GHHHH-----STTCSEEEECCSSCCBC---HHHHTTSCTTCEEE
T ss_pred             hHHHH-----hhCCCEEEECCChhhhC---HHHHHhCCCCCEEE
Confidence            24443     36789999987753322   23457889988665

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=81.67  E-value=13  Score=27.32  Aligned_cols=77  Identities=18%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhc--cc
Q 022597          160 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQL--IR  235 (294)
Q Consensus       160 ~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~l--Lk  235 (294)
                      .+|..+|-++...+..++.++..|+  .+. ...+..+.+..+.    ...+|+|++|..  ..+-.++++.+.+.  ..
T Consensus         4 ~~ilivdd~~~~~~~l~~~L~~~g~--~v~-~~~~~~~a~~~l~----~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~   76 (127)
T 3i42_A            4 QQALIVEDYQAAAETFKELLEMLGF--QAD-YVMSGTDALHAMS----TRGYDAVFIDLNLPDTSGLALVKQLRALPMEK   76 (127)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHTTE--EEE-EESSHHHHHHHHH----HSCCSEEEEESBCSSSBHHHHHHHHHHSCCSS
T ss_pred             ceEEEEcCCHHHHHHHHHHHHHcCC--CEE-EECCHHHHHHHHH----hcCCCEEEEeCCCCCCCHHHHHHHHHhhhccC
Confidence            5788999999999999999998875  233 3455555555553    357999999965  33445677777665  33


Q ss_pred             CCeEEEEe
Q 022597          236 VGGIIVID  243 (294)
Q Consensus       236 pgG~ivid  243 (294)
                      .--++++.
T Consensus        77 ~~~ii~~s   84 (127)
T 3i42_A           77 TSKFVAVS   84 (127)
T ss_dssp             CCEEEEEE
T ss_pred             CCCEEEEE
Confidence            33455544

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=81.31  E-value=3.7  Score=38.17  Aligned_cols=90  Identities=10%  Similarity=0.098  Sum_probs=56.9

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      ++|.=||+                 |..+-.++..+. .+.+|++.|.+++..+.++    +.|..    . ..+..+.+
T Consensus         9 ~kIgIIG~-----------------G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~----~~G~~----~-~~~~~e~~   62 (341)
T 3ktd_A            9 RPVCILGL-----------------GLIGGSLLRDLHAANHSVFGYNRSRSGAKSAV----DEGFD----V-SADLEATL   62 (341)
T ss_dssp             SCEEEECC-----------------SHHHHHHHHHHHHTTCCEEEECSCHHHHHHHH----HTTCC----E-ESCHHHHH
T ss_pred             CEEEEEee-----------------cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----HcCCe----e-eCCHHHHH
Confidence            36888898                 445555555542 2468999999998776654    34541    1 23444443


Q ss_pred             HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +..     ....|+||+-.+.....+.++.+.++ +||. +++|
T Consensus        63 ~~a-----~~~aDlVilavP~~~~~~vl~~l~~~-~~~~-iv~D   99 (341)
T 3ktd_A           63 QRA-----AAEDALIVLAVPMTAIDSLLDAVHTH-APNN-GFTD   99 (341)
T ss_dssp             HHH-----HHTTCEEEECSCHHHHHHHHHHHHHH-CTTC-CEEE
T ss_pred             Hhc-----ccCCCEEEEeCCHHHHHHHHHHHHcc-CCCC-EEEE
Confidence            321     12469999998876677778777775 6664 4554

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=81.23  E-value=4.5  Score=38.45  Aligned_cols=87  Identities=10%  Similarity=0.119  Sum_probs=49.6

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHH------------HHHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADSLKALILNGEASSYD  212 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~------------~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD  212 (294)
                      |+.+..++..+. .+.+|+++|++++.++..++.            +.+.--..++++ ..+..+.+         ...|
T Consensus         9 G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~-t~~~~~~~---------~~aD   78 (436)
T 1mv8_A            9 GYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKAV---------LDSD   78 (436)
T ss_dssp             STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH---------HTCS
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE-eCCHHHHh---------ccCC
Confidence            555555554442 246899999999987655431            110000112433 22332222         3579


Q ss_pred             EEEEcCCccc----------hHHHHHHHHhcccC---CeEEEE
Q 022597          213 FAFVDAEKRM----------YQEYFELLLQLIRV---GGIIVI  242 (294)
Q Consensus       213 ~vfiD~~~~~----------~~~~~~~~~~lLkp---gG~ivi  242 (294)
                      +||+-.+.+.          ..+.++.+.+.|++   |.+++.
T Consensus        79 vviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~  121 (436)
T 1mv8_A           79 VSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVV  121 (436)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEE
T ss_pred             EEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEE
Confidence            9998775332          67777888888998   666654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=81.20  E-value=1.7  Score=41.34  Aligned_cols=41  Identities=15%  Similarity=0.186  Sum_probs=33.1

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHH
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVA  175 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A  175 (294)
                      .+.+|+=+|+|.+              |.....++..++  .+|+++|.+++..+.+
T Consensus       171 ~g~~V~ViGaG~i--------------G~~aa~~a~~~G--a~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          171 PPAKVMVIGAGVA--------------GLAAIGAANSLG--AIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             CCCEEEEECCSHH--------------HHHHHHHHHHTT--CEEEEECSCGGGHHHH
T ss_pred             CCCEEEEECCCHH--------------HHHHHHHHHHCC--CEEEEEcCCHHHHHHH
Confidence            5789999999874              777777777774  6899999999877665

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=81.16  E-value=7.1  Score=35.21  Aligned_cols=94  Identities=13%  Similarity=0.123  Sum_probs=54.9

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCC------CCcEEEEEc
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGV------SHKVKIKHG  193 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl------~~~v~~~~g  193 (294)
                      .+|.=||+|.                 .+..++..+. .+..|+.++.++.      +.+++.|+      ...+++..-
T Consensus         3 mkI~IiGaGa-----------------iG~~~a~~L~~~g~~V~~~~r~~~------~~i~~~Gl~~~~~~~g~~~~~~~   59 (320)
T 3i83_A            3 LNILVIGTGA-----------------IGSFYGALLAKTGHCVSVVSRSDY------ETVKAKGIRIRSATLGDYTFRPA   59 (320)
T ss_dssp             CEEEEESCCH-----------------HHHHHHHHHHHTTCEEEEECSTTH------HHHHHHCEEEEETTTCCEEECCS
T ss_pred             CEEEEECcCH-----------------HHHHHHHHHHhCCCeEEEEeCChH------HHHHhCCcEEeecCCCcEEEeee
Confidence            3788889954                 4444444332 2468999999872      33444443      112222100


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+.......     ...+|+||+-.......+.++.+.+.++++..++.
T Consensus        60 ~~~~~~~~~-----~~~~DlVilavK~~~~~~~l~~l~~~l~~~t~Iv~  103 (320)
T 3i83_A           60 AVVRSAAEL-----ETKPDCTLLCIKVVEGADRVGLLRDAVAPDTGIVL  103 (320)
T ss_dssp             CEESCGGGC-----SSCCSEEEECCCCCTTCCHHHHHTTSCCTTCEEEE
T ss_pred             eeECCHHHc-----CCCCCEEEEecCCCChHHHHHHHHhhcCCCCEEEE
Confidence            010111111     24799999988766667788889999999887664

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=81.10  E-value=6.4  Score=34.78  Aligned_cols=34  Identities=9%  Similarity=0.066  Sum_probs=27.8

Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          209 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       209 ~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ..+|+||+-.......+.++.+.+.++++.+++.
T Consensus        82 ~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~  115 (317)
T 2qyt_A           82 GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILP  115 (317)
T ss_dssp             CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEE
Confidence            5799999988777778888888888888876654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=81.09  E-value=10  Score=34.57  Aligned_cols=75  Identities=19%  Similarity=0.096  Sum_probs=44.6

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH-HHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV-AKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~-A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      .+|.=||+|.+              |+.........+-..+++.+|++++.++. +........+...+++..++..+. 
T Consensus         6 ~KI~IiGaG~v--------------G~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~-   70 (318)
T 1ez4_A            6 QKVVLVGDGAV--------------GSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC-   70 (318)
T ss_dssp             CEEEEECCSHH--------------HHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG-
T ss_pred             CEEEEECCCHH--------------HHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHh-
Confidence            47889999774              55433333322324589999999987764 333333222224566665554332 


Q ss_pred             HHHhhcCCCCceeEEEEcCC
Q 022597          200 KALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~  219 (294)
                               ..-|+|++-++
T Consensus        71 ---------~~aDvVii~ag   81 (318)
T 1ez4_A           71 ---------KDADLVVITAG   81 (318)
T ss_dssp             ---------TTCSEEEECCC
T ss_pred             ---------CCCCEEEECCC
Confidence                     46799998765

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=80.98  E-value=10  Score=34.01  Aligned_cols=72  Identities=11%  Similarity=0.054  Sum_probs=41.9

Q ss_pred             cEEEEEeCChHHHHHHHHHHHHh-C-CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccc---------------
Q 022597          160 GCLVACERDARSLEVAKKYYERA-G-VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRM---------------  222 (294)
Q Consensus       160 ~~v~~id~~~~~~~~A~~~~~~~-g-l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~---------------  222 (294)
                      .+|+.+|++++.++.....+... . ....+++...|. +.         -...|+||+-.+...               
T Consensus        27 ~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~---------~~~aDvViiav~~~~~~~~~~g~~r~~l~~   96 (309)
T 1hyh_A           27 DDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AA---------LADADVVISTLGNIKLQQDNPTGDRFAELK   96 (309)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GG---------GTTCSEEEECCSCGGGTC-------CTTHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HH---------hCCCCEEEEecCCcccCCCCCCCCHHHHHH
Confidence            58999999998776554433321 1 112355544554 22         246899998775332               


Q ss_pred             -----hHHHHHHHHhcccCCeEEEE
Q 022597          223 -----YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       223 -----~~~~~~~~~~lLkpgG~ivi  242 (294)
                           ..+.++.+.+. .|++++++
T Consensus        97 ~n~~i~~~i~~~i~~~-~~~~~ii~  120 (309)
T 1hyh_A           97 FTSSMVQSVGTNLKES-GFHGVLVV  120 (309)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred             HHHHHHHHHHHHHHHH-CCCcEEEE
Confidence                 24555555554 47777664

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=80.95  E-value=12  Score=33.10  Aligned_cols=84  Identities=19%  Similarity=0.114  Sum_probs=58.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +++|.+|-.|.+.               | .+.++++.+ ..+++|+.+|++++.++.+.+.++..|.  ++.++..|..
T Consensus         5 L~gKvalVTGas~---------------G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt   66 (254)
T 4fn4_A            5 LKNKVVIVTGAGS---------------G-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVS   66 (254)
T ss_dssp             GTTCEEEEETTTS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTT
T ss_pred             CCCCEEEEeCCCC---------------H-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCC
Confidence            4678899999876               5 456666655 3578999999999999888888887663  5888888875


Q ss_pred             hh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          197 DS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       197 ~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      +.  ++.+.+.-  ..++.|.++.+++
T Consensus        67 ~~~~v~~~~~~~~~~~G~iDiLVNNAG   93 (254)
T 4fn4_A           67 KKKDVEEFVRRTFETYSRIDVLCNNAG   93 (254)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            42  22221110  1368999987654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=80.77  E-value=6.2  Score=35.72  Aligned_cols=86  Identities=16%  Similarity=0.216  Sum_probs=56.1

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-C----cEEEEEeCChH--HHHHHHHHHHHhCCCCcEEEEEc
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-S----GCLVACERDAR--SLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~----~~v~~id~~~~--~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      .+|.=||+                 |..+..++..+.. +    ..|+.++.+++  ..+.++    +.|+    ++ ..
T Consensus        23 mkI~iIG~-----------------G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~----~~G~----~~-~~   76 (322)
T 2izz_A           23 MSVGFIGA-----------------GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR----KMGV----KL-TP   76 (322)
T ss_dssp             CCEEEESC-----------------SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH----HHTC----EE-ES
T ss_pred             CEEEEECC-----------------CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH----HcCC----EE-eC
Confidence            46888999                 5555565555422 3    47999999985  554433    3353    32 23


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEE
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      +..+.+         ...|+||+-.......+.++.+.+.+++|.+++
T Consensus        77 ~~~e~~---------~~aDvVilav~~~~~~~vl~~l~~~l~~~~ivv  115 (322)
T 2izz_A           77 HNKETV---------QHSDVLFLAVKPHIIPFILDEIGADIEDRHIVV  115 (322)
T ss_dssp             CHHHHH---------HHCSEEEECSCGGGHHHHHHHHGGGCCTTCEEE
T ss_pred             ChHHHh---------ccCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence            333322         357999999887778888888888888877544

>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}

Probab=80.71  E-value=16  Score=27.41  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=52.9

Q ss_pred             CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHh--cc
Q 022597          159 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQ--LI  234 (294)
Q Consensus       159 ~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~--lL  234 (294)
                      ..+|..+|-++...+..++.++..|+.  +. ...+..+.+..+.    ..++|+|++|..  ..+-.++++.+.+  ..
T Consensus         6 ~~~iLivdd~~~~~~~l~~~l~~~g~~--v~-~~~~~~~a~~~l~----~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~   78 (140)
T 3grc_A            6 RPRILICEDDPDIARLLNLMLEKGGFD--SD-MVHSAAQALEQVA----RRPYAAMTVDLNLPDQDGVSLIRALRRDSRT   78 (140)
T ss_dssp             CSEEEEECSCHHHHHHHHHHHHHTTCE--EE-EECSHHHHHHHHH----HSCCSEEEECSCCSSSCHHHHHHHHHTSGGG
T ss_pred             CCCEEEEcCCHHHHHHHHHHHHHCCCe--EE-EECCHHHHHHHHH----hCCCCEEEEeCCCCCCCHHHHHHHHHhCccc
Confidence            468999999999999999999987763  43 3456666665553    367999999975  2334566777665  22


Q ss_pred             cCCeEEEEe
Q 022597          235 RVGGIIVID  243 (294)
Q Consensus       235 kpgG~ivid  243 (294)
                      ..--++++.
T Consensus        79 ~~~~ii~~s   87 (140)
T 3grc_A           79 RDLAIVVVS   87 (140)
T ss_dssp             TTCEEEEEC
T ss_pred             CCCCEEEEe
Confidence            333445543

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=80.70  E-value=11  Score=31.18  Aligned_cols=86  Identities=17%  Similarity=0.150  Sum_probs=50.1

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCC-CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccch
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY  223 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~  223 (294)
                      |..+..++..+. .+.+|+.++.+++..+...+.+... +. ..++  ..+..+.+         ...|+||+-.+....
T Consensus        10 G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~---------~~~D~Vi~~~~~~~~   77 (212)
T 1jay_A           10 GNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRI-AGDASIT--GMKNEDAA---------EACDIAVLTIPWEHA   77 (212)
T ss_dssp             SHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHH-HSSCCEE--EEEHHHHH---------HHCSEEEECSCHHHH
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccc-cccCCCC--hhhHHHHH---------hcCCEEEEeCChhhH
Confidence            666666666553 3568999999988766554432210 10 1233  22332322         347999988876666


Q ss_pred             HHHHHHHHhcccCCeEEEEecc
Q 022597          224 QEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       224 ~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.++.+.+.+ + |.++++..
T Consensus        78 ~~~~~~l~~~~-~-~~~vi~~~   97 (212)
T 1jay_A           78 IDTARDLKNIL-R-EKIVVSPL   97 (212)
T ss_dssp             HHHHHHTHHHH-T-TSEEEECC
T ss_pred             HHHHHHHHHHc-C-CCEEEEcC
Confidence            67776666666 4 44556544

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=80.60  E-value=1.8  Score=39.12  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=28.7

Q ss_pred             CceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          209 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       209 ~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ..+|+||+-.......+.++.+.+.++++..++.
T Consensus        68 ~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~  101 (312)
T 3hn2_A           68 GPMDLVLVGLKTFANSRYEELIRPLVEEGTQILT  101 (312)
T ss_dssp             CCCSEEEECCCGGGGGGHHHHHGGGCCTTCEEEE
T ss_pred             CCCCEEEEecCCCCcHHHHHHHHhhcCCCCEEEE
Confidence            5799999988777777889999999999987664

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=80.22  E-value=21  Score=32.29  Aligned_cols=76  Identities=18%  Similarity=0.146  Sum_probs=43.5

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH-HHHHHHHhCC-CCcEEEEEcchhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV-AKKYYERAGV-SHKVKIKHGLAAD  197 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~-A~~~~~~~gl-~~~v~~~~gda~~  197 (294)
                      ..+|.=||+|.+              |++....+...+...+|+.+|++++..+. +......... ...+++..++..+
T Consensus         6 ~~kI~IIGaG~v--------------G~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~a   71 (316)
T 1ldn_A            6 GARVVVIGAGFV--------------GASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD   71 (316)
T ss_dssp             SCEEEEECCSHH--------------HHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG
T ss_pred             CCEEEEECcCHH--------------HHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHH
Confidence            458999999875              44333222222224589999999985553 3333333221 1246666544322


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC
Q 022597          198 SLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                                -...|+|++-.+
T Consensus        72 ----------l~~aDvViia~~   83 (316)
T 1ldn_A           72 ----------CRDADLVVICAG   83 (316)
T ss_dssp             ----------TTTCSEEEECCS
T ss_pred             ----------hCCCCEEEEcCC
Confidence                      256899998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	6e-56
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	8e-56
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	5e-41
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	2e-09
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	5e-06
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	5e-06
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	3e-05

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  178 bits (451), Expect = 6e-56
 Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 20/232 (8%)

Query: 67  SVTPP----LYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQ 121
            + PP    L+ Y+L   +RE   LR LR  T         ++ +QAQLLA L +++ A+
Sbjct: 2   CLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAK 61

Query: 122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 181
           + +++G +T                 S+LA+AL LP  G +V CE DA+  E+ +  + +
Sbjct: 62  KALDLGTFTGY---------------SALALALALPADGRVVTCEVDAQPPELGRPLWRQ 106

Query: 182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 241
           A   HK+ ++   A ++L  L+  GEA ++D A VDA+K     Y+E  LQL+R GGI+ 
Sbjct: 107 AEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILA 166

Query: 242 IDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK 293
           +  VLW GKV      D     +RN N+ +  D RV IS++P+GDG+T+  K
Sbjct: 167 VLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK 218

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  178 bits (451), Expect = 8e-56
 Identities = 82/238 (34%), Positives = 125/238 (52%), Gaps = 25/238 (10%)

Query: 66  ISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQR 122
           +  +  LY YIL      RE E +++LRE TA    + M  S D+ Q L+ML++++ A+ 
Sbjct: 3   LLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKN 62

Query: 123 CIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 182
            +E+GVYT                 S LA AL +PE G ++A + +  + E+     ++A
Sbjct: 63  TMEIGVYTGY---------------SLLATALAIPEDGKILAMDINKENYELGLPVIKKA 107

Query: 183 GVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 241
           GV HK+  + G A   L  +I +     SYDF FVDA+K  Y  Y + L+ L++VGG+I 
Sbjct: 108 GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIG 167

Query: 242 IDNVLWHGKVADQMVNDAKTIS------IRNFNKNLMEDERVSISMVPIGDGMTICQK 293
            DN LW+G V        +         +   NK L  D R+ I M+P+GDG+TIC++
Sbjct: 168 YDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR 225

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  139 bits (351), Expect = 5e-41
 Identities = 41/227 (18%), Positives = 87/227 (38%), Gaps = 26/227 (11%)

Query: 72  LYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVY 129
           +  Y+ +N +  +P+ + +  +     +   M V   + Q++  +++       +E+G Y
Sbjct: 7   ILRYVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAY 66

Query: 130 TVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 189
                           GYS++ +A +L     L+  E +     + ++    AG+  KV 
Sbjct: 67  C---------------GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVT 111

Query: 190 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELL--LQLIRVGGIIVIDNVLW 247
           I +G + D +  L    +  + D  F+D  K  Y     LL    L+R G +++ DNV+ 
Sbjct: 112 ILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIV 171

Query: 248 HGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQKR 294
            G              +R  +          +  + + DG+     +
Sbjct: 172 PGTPDFLAY-------VRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ 211

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 35/226 (15%), Positives = 70/226 (30%), Gaps = 31/226 (13%)

Query: 68  VTPPLYDYILRNVREPEILRQLREETAGM---RGSQMQVSPDQAQLLAMLVQILGAQRCI 124
           +T    D+ L   R  E  R L          RG +M   PD   +   ++  L  +  +
Sbjct: 28  LTDRPRDWPL--DRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIV 85

Query: 125 EVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 184
           E+GVY       S +     +                ++  +RD    ++     E    
Sbjct: 86  ELGVYN----GGSLAWFRDLTKIM--------GIDCQVIGIDRDLSRCQIPASDMEN--- 130

Query: 185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL-QLIRVGGIIVI- 242
                I       S      +    ++   F+D          +  +  L+  G   +I 
Sbjct: 131 -----ITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIE 185

Query: 243 DNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGM 288
           D + +  + A Q+ ++     +  F   L  D   + +   +  G+
Sbjct: 186 DMIPYWYRYAPQLFSE----YLGAFRDVLSMDMLYANASSQLDRGV 227

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 5e-06
 Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 24/152 (15%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL 156
           RG+ +   P    ++  ++ I      +E G                 SG  SL ++  +
Sbjct: 77  RGTAI-TFPKDINMILSMMDINPGDTVLEAGS---------------GSGGMSLFLSKAV 120

Query: 157 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD------SLKALILNGEASS 210
              G +++ E      ++AKK Y+    S K+        +       +     + ++ +
Sbjct: 121 GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLT 180

Query: 211 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 242
           +D   +D           +    ++ GG+  +
Sbjct: 181 FDAVALDMLNP--HVTLPVFYPHLKHGGVCAV 210

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.3 bits (104), Expect = 5e-06
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 25/146 (17%)

Query: 97  RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL 156
           R +Q+    D + ++     +      +EVGV +               G  S  I   L
Sbjct: 64  RNTQIISEIDASYIIMRC-GLRPGMDILEVGVGS---------------GNMSSYILYAL 107

Query: 157 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 216
              G L   ERD  +L+ A            V+      AD +             +  V
Sbjct: 108 NGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS---------DQMYDAV 158

Query: 217 DAEKRMYQEYFELLLQLIRVGGIIVI 242
            A+      + + +  +++ G +   
Sbjct: 159 IADIPDPWNHVQKIASMMKPGSVATF 184

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 29/182 (15%), Positives = 63/182 (34%), Gaps = 38/182 (20%)

Query: 61  SNKQVISVTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
           +    + + P L DY++   R P++                 + P  A  +     I   
Sbjct: 55  NGALFLVLRPLLVDYVMSMPRGPQV-----------------IYPKDAAQIVHEGDIFPG 97

Query: 121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE 180
            R +E G                 SG  +L++   +  +G +++ E+ A   E A++   
Sbjct: 98  ARVLEAGA---------------GSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 142

Query: 181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGII 240
                     +  ++  +   L       S D A +D       E  + + +L+  GG++
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELP----DGSVDRAVLDMLA--PWEVLDAVSRLLVAGGVL 196

Query: 241 VI 242
           ++
Sbjct: 197 MV 198

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.98
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.87
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.83
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.83
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.71
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.67
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.58
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.58
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.58
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.56
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.55
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.55
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.54
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.54
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.52
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.51
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.5
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.5
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.49
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.49
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.48
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.48
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.46
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.46
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.45
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.43
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.42
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.4
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.39
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.39
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.39
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.38
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.37
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.36
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.35
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.35
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.35
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.33
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.33
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.32
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.32
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.31
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.31
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.31
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.28
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.26
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.25
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.25
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.24
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.22
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.22
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.17
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.16
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.16
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.16
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.15
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.15
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.14
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.13
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.13
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.12
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.12
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.1
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.1
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.05
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.03
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.01
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.98
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.97
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.97
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.96
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.93
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.93
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.92
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.88
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.76
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.74
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.74
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.69
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.65
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.63
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.42
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.41
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.38
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.32
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.31
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.2
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.14
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.14
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.12
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.05
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.88
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.86
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.77
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.76
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.7
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.69
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.68
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.59
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.55
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.46
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.4
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.39
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.34
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.27
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.19
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.16
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.06
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.96
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.83
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.71
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.68
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.44
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.4
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.37
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.35
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.24
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.18
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.03
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.01
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.93
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.89
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.86
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.49
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.35
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.22
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.12
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.07
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.95
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	94.83
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.6
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.31
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	94.19
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.01
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.77
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	93.69
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.55
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.44
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.25
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	93.08
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.61
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.28
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	92.24
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.5
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	90.35
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	90.11
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.17
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	88.32
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	87.67
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	87.58
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	87.55
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	87.39
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	87.27
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	86.93
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	86.85
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	86.4
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.2
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	85.68
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	85.14
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	84.31
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	84.07
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	84.01
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	83.85
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	83.42
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	82.29
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	82.26
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	81.74
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	81.68
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	81.63
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	81.43
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	81.19
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	80.8
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	80.27

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-44  Score=322.90  Aligned_cols=211  Identities=38%  Similarity=0.657  Sum_probs=202.0

Q ss_pred             CChhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCc
Q 022597           68 VTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSG  146 (294)
Q Consensus        68 l~~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG  146 (294)
                      .++++++|+.++ .++++.|+++++++..+..+.|.++|++|++|.++++..++++|||||||+               |
T Consensus         7 ~~~~l~~Y~~~~~~~~~~~l~~l~~~t~~~~~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~---------------G   71 (219)
T d2avda1           7 EDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFT---------------G   71 (219)
T ss_dssp             TTSHHHHHHHHTTCCCCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTT---------------S
T ss_pred             CcHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHccCCCeEEEEechh---------------h
Confidence            456899999998 678999999999998887778999999999999999999999999999999               9


Q ss_pred             HHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHH
Q 022597          147 YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY  226 (294)
Q Consensus       147 ~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~  226 (294)
                      ||+++++.+++++++|+++|.+++..+.|+++++++|+.++++++.||+.+.++.+...+..++||+||+|++++.|..+
T Consensus        72 yStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~y~~~  151 (219)
T d2avda1          72 YSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAY  151 (219)
T ss_dssp             HHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTHHHH
T ss_pred             HHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccEEEEeCCHHHHHHH
Confidence            99999999999899999999999999999999999999999999999999999888777667899999999999999999


Q ss_pred             HHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 022597          227 FELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMVPIGDGMTICQK  293 (294)
Q Consensus       227 ~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k  293 (294)
                      ++.+.++|+|||+|++||++|+|.|.+|...++.+.++|+||+.+.+||+++++++|+|||++||+|
T Consensus       152 ~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPigdGl~ia~K  218 (219)
T d2avda1         152 YERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFK  218 (219)
T ss_dssp             HHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEE
T ss_pred             HHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEEeecCCeeEEEEe
Confidence            9999999999999999999999999999988999999999999999999999999999999999998

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=4.3e-44  Score=321.01  Aligned_cols=214  Identities=39%  Similarity=0.680  Sum_probs=198.7

Q ss_pred             ccCCChhHHHHHHhc---CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccc
Q 022597           65 VISVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSIL  141 (294)
Q Consensus        65 ~~~l~~~l~~Y~~~~---~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~  141 (294)
                      .+..++++++|+.++   .++++.|+++++.+..+..+.|+++|++|++|.++++..++++||||||++           
T Consensus         2 ~~~~~~~l~~Yi~~~s~~~~~~~~l~~l~~~~~~~~~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~-----------   70 (227)
T d1susa1           2 SLLQSDALYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYT-----------   70 (227)
T ss_dssp             CSBSCHHHHHHHHHHHTSSSCTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGG-----------
T ss_pred             CccccHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHHhcCCCcEEEecchh-----------
Confidence            456789999999875   367899999999999988888999999999999999999999999999999           


Q ss_pred             cCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcC-CCCceeEEEEcCCc
Q 022597          142 SLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEK  220 (294)
Q Consensus       142 ~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~-~~~~fD~vfiD~~~  220 (294)
                          |||+++++++++++++|+++|.+++..+.|+++++++|+.++++++.|++.+.++.+...+ ..++||+||+|+++
T Consensus        71 ----GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k  146 (227)
T d1susa1          71 ----GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK  146 (227)
T ss_dssp             ----GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCS
T ss_pred             ----hhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCceeEEEeccch
Confidence                9999999999998999999999999999999999999999999999999999999886543 25689999999999


Q ss_pred             cchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCcch------HHHHHHHHHhhhCCCeEEEEeecCCceEEEEE
Q 022597          221 RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKT------ISIRNFNKNLMEDERVSISMVPIGDGMTICQK  293 (294)
Q Consensus       221 ~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~------~~ir~f~~~l~~~~~~~~~~lp~gdGl~i~~k  293 (294)
                      ..|..||+.+.++|+|||+|++||++|+|.|.+|...+..+      .++++||+.+.+||+++++++|+|||++||+|
T Consensus       147 ~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~llPigDGl~i~~K  225 (227)
T d1susa1         147 DNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRR  225 (227)
T ss_dssp             TTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEEECSTTCEEEECB
T ss_pred             hhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEEeecCCeeEEEEE
Confidence            99999999999999999999999999999999887655443      37999999999999999999999999999998

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=1.5e-31  Score=236.54  Aligned_cols=195  Identities=20%  Similarity=0.333  Sum_probs=170.3

Q ss_pred             hhHHHHHHhcCCC---hHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCc
Q 022597           70 PPLYDYILRNVRE---PEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSG  146 (294)
Q Consensus        70 ~~l~~Y~~~~~~~---~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG  146 (294)
                      +++++|+.++..+   ++.|+.+.+.+.+. .+.|+++|++|++|..+++..+|++|||||||+               |
T Consensus         5 ~~~~~yv~~~~~~~~p~~vl~~~~~~~~~~-~~~m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~---------------G   68 (214)
T d2cl5a1           5 QRILRYVQQNAKPGDPQSVLEAIDTYCTQK-EWAMNVGDAKGQIMDAVIREYSPSLVLELGAYC---------------G   68 (214)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHT-CCCCSCHHHHHHHHHHHHHHHCCSEEEEECCTT---------------S
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHhhc-CCccccCHHHHHHHHHHHHhhCCCEEEEEccCc---------------h
Confidence            4788999998432   46888887766553 467899999999999999999999999999999               9


Q ss_pred             HHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHH
Q 022597          147 YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEY  226 (294)
Q Consensus       147 ~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~  226 (294)
                      +++++++++++++++|+++|.++++.+.|+++++.+|+.++|+++.||+.+.++.+......++||+||+|+++..|..+
T Consensus        69 ~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~  148 (214)
T d2cl5a1          69 YSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPD  148 (214)
T ss_dssp             HHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHH
T ss_pred             hHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccceeeecccccccccH
Confidence            99999999998889999999999999999999999999999999999999998887766556789999999999988775


Q ss_pred             --HHHHHhcccCCeEEEEecccCCCcccCcccCCcchHHHHHHHHHhhhCCCeEEEE-------eecCCceEEEEEC
Q 022597          227 --FELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISM-------VPIGDGMTICQKR  294 (294)
Q Consensus       227 --~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~~~~~ir~f~~~l~~~~~~~~~~-------lp~gdGl~i~~k~  294 (294)
                        +...+++|+|||+|++||++|+|.              .++.+.+++++++.++.       +|++||+.++..+
T Consensus       149 ~~l~~~~~lLkpGGvIv~Ddvl~~g~--------------~~~~~~vr~~~~~~~~~~~~~~~~~~~~dgl~~s~~~  211 (214)
T d2cl5a1         149 TLLLEKCGLLRKGTVLLADNVIVPGT--------------PDFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  211 (214)
T ss_dssp             HHHHHHTTCEEEEEEEEESCCCCCCC--------------HHHHHHHHHCTTEEEEEEEEECTTSSSEEEEEEEEEC
T ss_pred             HHHHHHhCccCCCcEEEEeCcCCCCC--------------hHHHHHHhccCceeehhhhhcceecccCCceEEEEec
Confidence              445568999999999999999985              35777788888887664       8999999998864

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=5.8e-23  Score=188.42  Aligned_cols=162  Identities=10%  Similarity=0.114  Sum_probs=139.4

Q ss_pred             CccccccccccccccccccccccCCChhHHHHHHhcC-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCe
Q 022597           44 NQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQR  122 (294)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~-~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~  122 (294)
                      |..+.+..|+++|||+++..|.+++++.+ .|+|.+- .+++.|+++|+.+..+              +...+.+.++.+
T Consensus         1 ~~~~~~~~~i~~HYD~~~~fy~~~Lg~~~-~YS~g~~~~~~~tL~eAQ~~k~~~--------------~~~~l~l~~G~~   65 (285)
T d1kpga_           1 DELKPHFANVQAHYDLSDDFFRLFLDPTQ-TYSCAYFERDDMTLQEAQIAKIDL--------------ALGKLGLQPGMT   65 (285)
T ss_dssp             CCSCCCHHHHHHHHTSCHHHHTTTSCTTC-CCSCCCCSSTTCCHHHHHHHHHHH--------------HHTTTTCCTTCE
T ss_pred             CCCCccHHHHHHhcCCcHHHHHHhCCCCC-cEeeEEeCCCCCCHHHHHHHHHHH--------------HHHHcCCCCCCE
Confidence            45667889999999999999999999998 9999984 5678999998887554              233344556679


Q ss_pred             EEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHH
Q 022597          123 CIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL  202 (294)
Q Consensus       123 vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l  202 (294)
                      |||||||+               |..++++++..  +++|+||++|+++++.|++.+++.|+.+++++..+|+.+.    
T Consensus        66 VLDiGCG~---------------G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~----  124 (285)
T d1kpga_          66 LLDVGCGW---------------GATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF----  124 (285)
T ss_dssp             EEEETCTT---------------SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC----
T ss_pred             EEEecCcc---------------hHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc----
Confidence            99999999               99999999986  5899999999999999999999999999999999998764    


Q ss_pred             hhcCCCCceeEEEE-----cCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          203 ILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       203 ~~~~~~~~fD~vfi-----D~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                           +++||.|+.     +.....+..+|+.+.++|+|||.++++.+.
T Consensus       125 -----~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         125 -----DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             -----CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             -----cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence                 578999875     334567899999999999999999999884

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=3.6e-21  Score=175.67  Aligned_cols=152  Identities=9%  Similarity=0.076  Sum_probs=128.5

Q ss_pred             ccccccccccccCCChhHHHHHHhcC-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccc
Q 022597           55 AHDEKYSNKQVISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCV  133 (294)
Q Consensus        55 ~~~~~~~~~~~~~l~~~l~~Y~~~~~-~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~  133 (294)
                      +|||+.+..|.++|++.+ .|+|++- .+++.|+++|+.+..+...+.              .+.++++|||||||+   
T Consensus         2 aHYD~~~~fy~~~ld~~m-~YS~~~~~~~~~tL~~AQ~~k~~~~~~~l--------------~l~~g~~VLDiGCG~---   63 (280)
T d2fk8a1           2 AHYDVSDDFFALFQDPTR-TYSCAYFEPPELTLEEAQYAKVDLNLDKL--------------DLKPGMTLLDIGCGW---   63 (280)
T ss_dssp             GGGCCCHHHHTTTSCTTC-CCSCCCCSSTTCCHHHHHHHHHHHHHTTS--------------CCCTTCEEEEESCTT---
T ss_pred             CCccCcHHHHHHhCCCCC-cEeeEEeCCCCCCHHHHHHHHHHHHHHHc--------------CCCCCCEEEEecCCc---
Confidence            799999999999999998 9999984 566799999887654322222              344566999999999   


Q ss_pred             cccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeE
Q 022597          134 SSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF  213 (294)
Q Consensus       134 ~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~  213 (294)
                                  |..+..+++..  +++|+++|+|+++++.|++.+++.|+..++.+...|..+.         .++||.
T Consensus        64 ------------G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---------~~~fD~  120 (280)
T d2fk8a1          64 ------------GTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---------AEPVDR  120 (280)
T ss_dssp             ------------SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---------CCCCSE
T ss_pred             ------------hHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---------ccchhh
Confidence                        98888888775  4799999999999999999999999999999999988754         689999


Q ss_pred             EEEc-----CCccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          214 AFVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       214 vfiD-----~~~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      |+.-     .+.+.+..+|+.+.++|||||.++++.+..
T Consensus       121 i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~  159 (280)
T d2fk8a1         121 IVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  159 (280)
T ss_dssp             EEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             hhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeec
Confidence            9753     345678999999999999999999987643

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=1.6e-21  Score=179.31  Aligned_cols=159  Identities=9%  Similarity=0.091  Sum_probs=135.0

Q ss_pred             ccccccccccccccccccCCChhHHHHHHhcC-CChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEc
Q 022597           49 NCCVSSAHDEKYSNKQVISVTPPLYDYILRNV-REPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVG  127 (294)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~~-~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG  127 (294)
                      +..++.+|||+.+..|.++|++.+ .|+|.+- .+++.|+++|+.+..+              +...+.+.++++|||||
T Consensus         5 ~~~~i~~HYD~~~~fy~~~Lg~~~-~YS~~~~~~~~~tL~~Aq~~k~~~--------------~~~~l~l~~G~~VLDiG   69 (291)
T d1kpia_           5 PVEAVRSHYDKSNEFFKLWLDPSM-TYSCAYFERPDMTLEEAQYAKRKL--------------ALDKLNLEPGMTLLDIG   69 (291)
T ss_dssp             CHHHHHHHHTSCHHHHHHHSCTTC-CCSCCCCSSTTCCHHHHHHHHHHH--------------HHHTTCCCTTCEEEEET
T ss_pred             cHhHHHHhcCCCHHHHHHhcCCCC-CeeeEEecCCCCCHHHHHHHHHHH--------------HHHhcCCCCCCEEEEec
Confidence            457899999999999999999998 9999985 4678999999887543              33334556677999999


Q ss_pred             cccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCC
Q 022597          128 VYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE  207 (294)
Q Consensus       128 ~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~  207 (294)
                      ||+               |..++.++...  +++|+|+++|+++++.|++.++..|+.+++++...|....         
T Consensus        70 CG~---------------G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~---------  123 (291)
T d1kpia_          70 CGW---------------GSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---------  123 (291)
T ss_dssp             CTT---------------SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---------
T ss_pred             Ccc---------------hHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc---------
Confidence            999               99999999876  4899999999999999999999999999999999998543         


Q ss_pred             CCceeEEEEcC-----C-------ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          208 ASSYDFAFVDA-----E-------KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       208 ~~~fD~vfiD~-----~-------~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      +++||.|+.-.     +       .+.|+.+|+.+.++|+|||.++++.+...
T Consensus       124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~  176 (291)
T d1kpia_         124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  176 (291)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred             ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence            68999997532     1       14589999999999999999999988643

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=7.4e-17  Score=137.33  Aligned_cols=119  Identities=20%  Similarity=0.300  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      ...+...++...+...++.+|||+|||+               |+.+++++..   .++|+++|+++++++.|+++++++
T Consensus        17 t~~eir~~il~~l~~~~g~~VLDiGcGs---------------G~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~   78 (186)
T d1l3ia_          17 TAMEVRCLIMCLAEPGKNDVAVDVGCGT---------------GGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRH   78 (186)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTT---------------SHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEEECCe---------------Eccccccccc---ceEEEEecCCHHHHHHHHHHHHHc
Confidence            5666666666777888899999999999               9999998764   469999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      |+.++++++++|+.+.+..      ...||.||++.......++++.+.+.|+|||.+++..+
T Consensus        79 gl~~~v~~~~gda~~~~~~------~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          79 GLGDNVTLMEGDAPEALCK------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             TCCTTEEEEESCHHHHHTT------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCcceEEEECchhhcccc------cCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEee
Confidence            9999999999999876543      47899999999888889999999999999999998755

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.2e-16  Score=140.56  Aligned_cols=125  Identities=21%  Similarity=0.213  Sum_probs=107.6

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      ..+++....|...+.+.++++|||||||+               |..+..+++..  +++|+|+|+|+.+++.|+++.+.
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~---------------G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~   78 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGS---------------GEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEE   78 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTT---------------CHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCC---------------CHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHH
Confidence            35777778888888888899999999999               99999988875  47999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCCc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~  250 (294)
                      .|+.++++++++|+.+...       +++||+|+.-..   ..+...+++.+.+.|||||.+++.+..|...
T Consensus        79 ~gl~~~v~~~~~d~~~~~~-------~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~  143 (245)
T d1nkva_          79 LGVSERVHFIHNDAAGYVA-------NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQL  143 (245)
T ss_dssp             TTCTTTEEEEESCCTTCCC-------SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTC
T ss_pred             hhccccchhhhhHHhhccc-------cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCC
Confidence            9999999999999977521       578999986432   3467899999999999999999998876554

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.58  E-value=7.9e-16  Score=138.14  Aligned_cols=137  Identities=19%  Similarity=0.153  Sum_probs=102.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      ++...+|.+. +...+.+.++++|||+|||+               |+.++++++++.++++|+++|.++++++.|++++
T Consensus        67 qiiypkD~~~-Ii~~l~i~pG~rVLEiG~Gs---------------G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~  130 (250)
T d1yb2a1          67 QIISEIDASY-IIMRCGLRPGMDILEVGVGS---------------GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNL  130 (250)
T ss_dssp             ---------------CCCCTTCEEEEECCTT---------------SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHH
T ss_pred             cccCHHHHHH-HHHHcCCCCcCEEEEeeeeC---------------cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHH
Confidence            4444455444 44557788899999999999               9999999999877899999999999999999999


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecccCCCcccCcccCCc
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA  259 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~~~~~~~~  259 (294)
                      ++.+..+++++.++|..+.++       +++||.||+|.+.  ..++++.+.+.|||||++++...              
T Consensus       131 ~~~~~~~nv~~~~~Di~~~~~-------~~~fD~V~ld~p~--p~~~l~~~~~~LKpGG~lv~~~P--------------  187 (250)
T d1yb2a1         131 SEFYDIGNVRTSRSDIADFIS-------DQMYDAVIADIPD--PWNHVQKIASMMKPGSVATFYLP--------------  187 (250)
T ss_dssp             HTTSCCTTEEEECSCTTTCCC-------SCCEEEEEECCSC--GGGSHHHHHHTEEEEEEEEEEES--------------
T ss_pred             HHhcCCCceEEEEeeeecccc-------cceeeeeeecCCc--hHHHHHHHHHhcCCCceEEEEeC--------------
Confidence            998878899999999876532       5789999999753  35778999999999999987421              


Q ss_pred             chHHHHHHHHHhhhCC
Q 022597          260 KTISIRNFNKNLMEDE  275 (294)
Q Consensus       260 ~~~~ir~f~~~l~~~~  275 (294)
                      ....+.+..+.+.+..
T Consensus       188 ~i~Qv~~~~~~l~~~g  203 (250)
T d1yb2a1         188 NFDQSEKTVLSLSASG  203 (250)
T ss_dssp             SHHHHHHHHHHSGGGT
T ss_pred             CcChHHHHHHHHHHCC
Confidence            2234556666665554

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=4.7e-15  Score=133.95  Aligned_cols=135  Identities=23%  Similarity=0.346  Sum_probs=112.9

Q ss_pred             CChhHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcH
Q 022597           68 VTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGY  147 (294)
Q Consensus        68 l~~~l~~Y~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~  147 (294)
                      +.|.+.+|+....+                ..+ .+-|..+.++..++.+.++++|||+|||+               |+
T Consensus        69 ~~p~~~d~~~~~~r----------------~~q-iiypkd~~~Ii~~l~i~pG~~VLDiG~Gs---------------G~  116 (266)
T d1o54a_          69 LIPSLIDEIMNMKR----------------RTQ-IVYPKDSSFIAMMLDVKEGDRIIDTGVGS---------------GA  116 (266)
T ss_dssp             ECCCHHHHHHTCCC-----------------CC-CCCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SH
T ss_pred             ECCCHHHHHhhccC----------------Ccc-ccchHHHHHHHHhhCCCCCCEEEECCCCC---------------CH
Confidence            45666777765433                223 35666777888889999999999999999               99


Q ss_pred             HHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHH
Q 022597          148 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYF  227 (294)
Q Consensus       148 ~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~  227 (294)
                      .+.++|+.+.++++|+++|.++++++.|++++++.|+.+++.+..+|..+..       +...||.||+|.+  +.++++
T Consensus       117 lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~-------~~~~~D~V~~d~p--~p~~~l  187 (266)
T d1o54a_         117 MCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF-------DEKDVDALFLDVP--DPWNYI  187 (266)
T ss_dssp             HHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC-------SCCSEEEEEECCS--CGGGTH
T ss_pred             HHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc-------cccceeeeEecCC--CHHHHH
Confidence            9999999998899999999999999999999999999999999999875432       2578999999975  346789


Q ss_pred             HHHHhcccCCeEEEEe
Q 022597          228 ELLLQLIRVGGIIVID  243 (294)
Q Consensus       228 ~~~~~lLkpgG~ivid  243 (294)
                      +.+.+.|||||.+++.
T Consensus       188 ~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         188 DKCWEALKGGGRFATV  203 (266)
T ss_dssp             HHHHHHEEEEEEEEEE
T ss_pred             HHHHhhcCCCCEEEEE
Confidence            9999999999999874

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=4.4e-15  Score=134.22  Aligned_cols=136  Identities=23%  Similarity=0.308  Sum_probs=111.5

Q ss_pred             CChhHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcH
Q 022597           68 VTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGY  147 (294)
Q Consensus        68 l~~~l~~Y~~~~~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~  147 (294)
                      +.|.+++|+....+                ..+ .+-|..+.++..++.+.++.+|||+|||+               |+
T Consensus        62 ~~pt~~~~~~~~~r----------------~tq-iiypkD~s~Ii~~l~i~PG~~VLE~G~Gs---------------G~  109 (264)
T d1i9ga_          62 LRPLLVDYVMSMPR----------------GPQ-VIYPKDAAQIVHEGDIFPGARVLEAGAGS---------------GA  109 (264)
T ss_dssp             ECCCHHHHHTTSCS----------------CSC-CCCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SH
T ss_pred             eCCCHHHHHhhccC----------------Ccc-ccchHHHHHHHHHhCCCCCCEEEecCcCC---------------cH
Confidence            46677777765333                223 35666777788888999999999999999               99


Q ss_pred             HHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHH
Q 022597          148 SSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE  225 (294)
Q Consensus       148 ~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~  225 (294)
                      .++++|.++.++++|+++|.++++++.|+++++..  +..+++++.++|..+.-      .++++||.||+|.+.  .++
T Consensus       110 lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~------~~~~~fDaV~ldlp~--P~~  181 (264)
T d1i9ga_         110 LTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE------LPDGSVDRAVLDMLA--PWE  181 (264)
T ss_dssp             HHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC------CCTTCEEEEEEESSC--GGG
T ss_pred             HHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc------ccCCCcceEEEecCC--HHH
Confidence            99999999988999999999999999999999976  45578999999987631      126899999999753  357


Q ss_pred             HHHHHHhcccCCeEEEEe
Q 022597          226 YFELLLQLIRVGGIIVID  243 (294)
Q Consensus       226 ~~~~~~~lLkpgG~ivid  243 (294)
                      +++.+.+.|||||.+++.
T Consensus       182 ~l~~~~~~LkpGG~lv~~  199 (264)
T d1i9ga_         182 VLDAVSRLLVAGGVLMVY  199 (264)
T ss_dssp             GHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHhccCCCCEEEEE
Confidence            888999999999999874

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.56  E-value=9.9e-15  Score=127.10  Aligned_cols=115  Identities=15%  Similarity=0.250  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          106 DQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       106 ~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      ....+|...+++.++++|||||||+               |..+..++..   .++|+|+|+|+++++.|+++++..|+.
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGt---------------G~~~~~la~~---~~~v~gvD~S~~~l~~A~~~~~~~~~~   64 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGA---------------GHTALAFSPY---VQECIGVDATKEMVEVASSFAQEKGVE   64 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTT---------------SHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcC---------------cHHHHHHHHh---CCeEEEEeCChhhhhhhhhhhcccccc
Confidence            4466788888899999999999999               9999999886   368999999999999999999999885


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                       +++++++|+.+. + +    +.++||+|++...   ..+...+++.+.+.|+|||++++.+.
T Consensus        65 -~~~~~~~d~~~~-~-~----~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~  120 (234)
T d1xxla_          65 -NVRFQQGTAESL-P-F----PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH  120 (234)
T ss_dssp             -SEEEEECBTTBC-C-S----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -cccccccccccc-c-c----cccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEc
Confidence             599999999763 1 1    2589999987543   34678999999999999999888543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.55  E-value=7.7e-15  Score=126.43  Aligned_cols=113  Identities=17%  Similarity=0.241  Sum_probs=92.1

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      ++++.. +++.++++|||||||+               |..+..++..   +++|+++|+|+++++.|+++++..+.. +
T Consensus         5 ~~ll~~-~~l~~~~rVLDiGcG~---------------G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~-~   64 (231)
T d1vl5a_           5 AKLMQI-AALKGNEEVLDVATGG---------------GHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQ-Q   64 (231)
T ss_dssp             HHHHHH-HTCCSCCEEEEETCTT---------------CHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCC-S
T ss_pred             HHHHHh-cCCCCcCEEEEecccC---------------cHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccccccc-c
Confidence            444443 6777889999999999               9999998875   469999999999999999999998875 6


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ++++++|+.+..  +    +.++||+|++...   ..+....+..+.++|+|||++++.+..
T Consensus        65 i~~~~~d~~~l~--~----~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  120 (231)
T d1vl5a_          65 VEYVQGDAEQMP--F----TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  120 (231)
T ss_dssp             EEEEECCC-CCC--S----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccccccccc--c----cccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            999999997641  1    2579999987643   346789999999999999999986543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.7e-14  Score=133.77  Aligned_cols=123  Identities=15%  Similarity=0.251  Sum_probs=97.8

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHH
Q 022597           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKY  178 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~  178 (294)
                      .++ +-|..+.++..++.+.++.+|||+|||+               |+.++++|+++.++++|+++|+++++++.|+++
T Consensus        79 tqi-iypkD~~~Il~~l~i~pG~rVLE~GtGs---------------G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n  142 (324)
T d2b25a1          79 TAI-TFPKDINMILSMMDINPGDTVLEAGSGS---------------GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKN  142 (324)
T ss_dssp             SCC-CCHHHHHHHHHHHTCCTTCEEEEECCTT---------------SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHH
T ss_pred             Ccc-cccccHHHHHHHhCCCCCCEEEEecccc---------------cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHH
Confidence            344 4455555566677999999999999999               999999999998899999999999999999999


Q ss_pred             HHHh----------CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          179 YERA----------GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       179 ~~~~----------gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +++.          +..+++++.++|..+....+.    ..+||.||+|.+.  ..++++.+.+.|||||.+++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~----~~~fD~V~LD~p~--P~~~l~~~~~~LKpGG~lv~~  211 (324)
T d2b25a1         143 YKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIK----SLTFDAVALDMLN--PHVTLPVFYPHLKHGGVCAVY  211 (324)
T ss_dssp             HHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----------EEEEEECSSS--TTTTHHHHGGGEEEEEEEEEE
T ss_pred             HHHhhhhhhhhhhhccccceeEEecchhhcccccC----CCCcceEeecCcC--HHHHHHHHHHhccCCCEEEEE
Confidence            9975          345789999999876544332    4689999999753  246788999999999999873

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.54  E-value=1.8e-14  Score=119.17  Aligned_cols=111  Identities=14%  Similarity=0.204  Sum_probs=92.6

Q ss_pred             HHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEE
Q 022597          111 LAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  190 (294)
Q Consensus       111 L~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~  190 (294)
                      +.++-....+++|||+||||               |..++..+...  ..+|+++|.++++++.++++++..++.+++++
T Consensus         6 fn~l~~~~~g~~vlDl~~Gt---------------G~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~i   68 (152)
T d2esra1           6 FNMIGPYFNGGRVLDLFAGS---------------GGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTL   68 (152)
T ss_dssp             HHHHCSCCCSCEEEEETCTT---------------CHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEE
T ss_pred             HHHHHhhCCCCeEEEcCCcc---------------CHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcccccchhh
Confidence            34444445788999999999               98888766532  35999999999999999999999999999999


Q ss_pred             EEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHH--hcccCCeEEEEe
Q 022597          191 KHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLL--QLIRVGGIIVID  243 (294)
Q Consensus       191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~--~lLkpgG~ivid  243 (294)
                      +++|+.+.++..     .++||+||+|++  ...+...++.+.  ++|+|||+++++
T Consensus        69 i~~D~~~~l~~~-----~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          69 LKMEAERAIDCL-----TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             ECSCHHHHHHHB-----CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hccccccccccc-----ccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence            999998877654     678999999987  455677788775  479999999986

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=1.1e-14  Score=126.88  Aligned_cols=116  Identities=26%  Similarity=0.376  Sum_probs=94.7

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      .+|.....+..++.+.++.+|||||||+               |+.+..+++..+++++|+++|+++++++.|+++++..
T Consensus        59 ~~P~~~a~~l~~l~l~~g~~VLdiG~Gt---------------G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~  123 (213)
T d1dl5a1          59 SQPSLMALFMEWVGLDKGMRVLEIGGGT---------------GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL  123 (213)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             ccchhhHHHHHhhhccccceEEEecCcc---------------chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh
Confidence            4466544444556778889999999999               9999999998887899999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++. ++.++++|+.+..+.      .++||.|++.+.....+   +.+.+.|+|||.+++.
T Consensus       124 ~~~-n~~~~~~d~~~~~~~------~~~fD~I~~~~~~~~~p---~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         124 GIE-NVIFVCGDGYYGVPE------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             TCC-SEEEEESCGGGCCGG------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEE
T ss_pred             ccc-ccccccCchHHcccc------ccchhhhhhhccHHHhH---HHHHHhcCCCcEEEEE
Confidence            886 588889998765432      47899999988755543   3456789999999884

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.52  E-value=1.3e-14  Score=130.01  Aligned_cols=110  Identities=14%  Similarity=0.224  Sum_probs=93.1

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++.+|||||||+               |..+..+++..  +++|+++|+++.+++.|+++.+..|+.++++++++|+
T Consensus        64 ~l~~~~~vLDiGcG~---------------G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~  126 (282)
T d2o57a1          64 VLQRQAKGLDLGAGY---------------GGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF  126 (282)
T ss_dssp             CCCTTCEEEEETCTT---------------SHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT
T ss_pred             CCCCCCEEEEeCCCC---------------cHHHhhhhccC--CcEEEEEeccchhhhhhhccccccccccccccccccc
Confidence            445678999999999               99999998865  5799999999999999999999999999999999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      .+..  +    +.++||+|+....   .++...+++.+.+.|||||.+++.+....
T Consensus       127 ~~l~--~----~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~  176 (282)
T d2o57a1         127 LEIP--C----EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE  176 (282)
T ss_dssp             TSCS--S----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             cccc--c----cccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence            7641  1    2589999986432   34678899999999999999999776543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.51  E-value=3.4e-14  Score=121.18  Aligned_cols=109  Identities=16%  Similarity=0.251  Sum_probs=90.0

Q ss_pred             HHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-c
Q 022597          109 QLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-K  187 (294)
Q Consensus       109 ~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-~  187 (294)
                      ++|...+...++++|||+|||+               |..++.++...   .+|+++|+|+.+++.|+++++.+++.. +
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~---------------G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~  103 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGY---------------GVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYD  103 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTT---------------SHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSC
T ss_pred             HHHHHhCCcCCCCeEEEEeecC---------------ChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccce
Confidence            4444455666788999999999               99999988754   589999999999999999999999874 6


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC----ccchHHHHHHHHhcccCCeEEEE
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE----KRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~----~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      +++..+|..+.++       +++||+|+.+++    ......+++.+.++|+|||.+++
T Consensus       104 i~~~~~d~~~~~~-------~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         104 IRVVHSDLYENVK-------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             EEEEECSTTTTCT-------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEcchhhhhc-------cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence            9999999876432       578999999865    23356789999999999998875

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.50  E-value=2.6e-13  Score=121.66  Aligned_cols=113  Identities=16%  Similarity=0.247  Sum_probs=91.5

Q ss_pred             HHHHHHHHHh-hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC
Q 022597          107 QAQLLAMLVQ-ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS  185 (294)
Q Consensus       107 ~~~lL~~l~~-~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~  185 (294)
                      +.-.|..+.. ..++++|||+|||+               |..++++++.   +++|+++|+|+++++.|+++++.+|+.
T Consensus       107 T~l~l~~l~~~~~~g~~VLDiGcGs---------------G~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~  168 (254)
T d2nxca1         107 TRLALKALARHLRPGDKVLDLGTGS---------------GVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR  168 (254)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETCTT---------------SHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHhhcCccCEEEEcccch---------------hHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc
Confidence            3444444443 34567999999999               9998877663   578999999999999999999999985


Q ss_pred             CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          186 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       186 ~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                        ++++++|..+.++       .++||+|+.+.......++++.+.+.|||||.+++.+++
T Consensus       169 --~~~~~~d~~~~~~-------~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         169 --PRFLEGSLEAALP-------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             --CEEEESCHHHHGG-------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             --eeEEecccccccc-------ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence              5788888765432       478999999877667788899999999999999997664

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.1e-14  Score=125.67  Aligned_cols=111  Identities=18%  Similarity=0.206  Sum_probs=89.8

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+.+|||||||+               |.++..++...  ..++++||+|+++++.|+++++..+  .+++++.+++.+.
T Consensus        53 ~g~~VLdIGcG~---------------G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~  113 (229)
T d1zx0a1          53 KGGRVLEVGFGM---------------AIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDV  113 (229)
T ss_dssp             TCEEEEEECCTT---------------SHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHH
T ss_pred             CCCeEEEeeccc---------------hHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccccccc
Confidence            456999999999               99999998754  3689999999999999999987754  4688888988776


Q ss_pred             HHHHhhcCCCCceeEEEEcCCc--------cchHHHHHHHHhcccCCeEEEEecccCCCccc
Q 022597          199 LKALILNGEASSYDFAFVDAEK--------RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA  252 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~--------~~~~~~~~~~~~lLkpgG~ivid~vl~~g~v~  252 (294)
                      ...+    +.++||.|+.|...        .+...+++.+.++|||||++++.+..+.+...
T Consensus       114 ~~~~----~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~  171 (229)
T d1zx0a1         114 APTL----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELM  171 (229)
T ss_dssp             GGGS----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHT
T ss_pred             cccc----ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhh
Confidence            5443    25899999988652        23567889999999999999998877655543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.49  E-value=1e-13  Score=127.92  Aligned_cols=123  Identities=24%  Similarity=0.310  Sum_probs=101.5

Q ss_pred             CHHHHHHHHHHHhh-hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          104 SPDQAQLLAMLVQI-LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       104 ~~~~~~lL~~l~~~-~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      -.++...-.++... .++++|||+|||+               |..++.++..-  ..+|+++|++++.++.|+++++.+
T Consensus       129 flDqr~~r~~~~~~~~~g~~VLDl~~g~---------------G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~n  191 (324)
T d2as0a2         129 FLDQRENRLALEKWVQPGDRVLDVFTYT---------------GGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLN  191 (324)
T ss_dssp             CSTTHHHHHHHGGGCCTTCEEEETTCTT---------------THHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             ccchhhHHHHHHhhcCCCCeeecccCcc---------------cchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHc
Confidence            33444444455553 3578999999999               99999888752  368999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      |+.++++++++|+.+.+..+...  ..+||+|++|++.            ..|.+++..+.++|+|||++++...
T Consensus       192 gl~~~~~~~~~d~~~~~~~~~~~--~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~  264 (324)
T d2as0a2         192 GVEDRMKFIVGSAFEEMEKLQKK--GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  264 (324)
T ss_dssp             TCGGGEEEEESCHHHHHHHHHHT--TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             CCCccceeeechhhhhhHHHHhc--cCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            99989999999999988766543  4789999999872            3588899999999999999998765

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.5e-14  Score=124.17  Aligned_cols=117  Identities=16%  Similarity=0.283  Sum_probs=93.6

Q ss_pred             CCHHH-HHHHHHHH-hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          103 VSPDQ-AQLLAMLV-QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       103 v~~~~-~~lL~~l~-~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ..|.. +++|..|. .+.++.+|||||||+               ||.+..+++...+.++|+++|+++++++.|+++++
T Consensus        58 s~P~~~a~~le~L~~~l~~g~~VLdiG~Gs---------------Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~  122 (224)
T d1i1na_          58 SAPHMHAYALELLFDQLHEGAKALDVGSGS---------------GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVR  122 (224)
T ss_dssp             CCHHHHHHHHHHTTTTSCTTCEEEEETCTT---------------SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhhccCCCCeEEEecCCC---------------CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhcc
Confidence            44543 55555443 456778999999999               99999999988778999999999999999999999


Q ss_pred             HhCCC----CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          181 RAGVS----HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       181 ~~gl~----~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.++.    .+++++.+|..+..+.      .++||.|++++.....+   +.+.+.|+|||.+|+-
T Consensus       123 ~~~~~~~~~~~~~~~~gD~~~~~~~------~~~fD~I~~~~~~~~ip---~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         123 KDDPTLLSSGRVQLVVGDGRMGYAE------EAPYDAIHVGAAAPVVP---QALIDQLKPGGRLILP  180 (224)
T ss_dssp             HHCTHHHHTSSEEEEESCGGGCCGG------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             ccCcccccccceEEEEeecccccch------hhhhhhhhhhcchhhcC---HHHHhhcCCCcEEEEE
Confidence            87764    5799999998765432      47899999998655433   3567889999999983

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.48  E-value=2e-13  Score=116.32  Aligned_cols=118  Identities=15%  Similarity=0.201  Sum_probs=97.3

Q ss_pred             HHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC
Q 022597          107 QAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH  186 (294)
Q Consensus       107 ~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~  186 (294)
                      ...+..++.....+.+|||++||+               |..++..+..-  ..+|+++|.|++.++.++++++..+..+
T Consensus        29 realFn~l~~~~~~~~vLDlfaGs---------------G~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~~~~   91 (182)
T d2fhpa1          29 KESIFNMIGPYFDGGMALDLYSGS---------------GGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPE   91 (182)
T ss_dssp             HHHHHHHHCSCCSSCEEEETTCTT---------------CHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHhcCCCEEEEccccc---------------ccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            344444444455778999999999               99988777642  4589999999999999999999999999


Q ss_pred             cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHH--hcccCCeEEEEe
Q 022597          187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLL--QLIRVGGIIVID  243 (294)
Q Consensus       187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~--~lLkpgG~ivid  243 (294)
                      +++++.+|+.+.++.+...  ..+||+||+|++  ...+...++.+.  .+|++||+|++.
T Consensus        92 ~~~i~~~D~~~~l~~~~~~--~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1          92 KFEVRKMDANRALEQFYEE--KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             GEEEEESCHHHHHHHHHHT--TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccccccccchhhhhhhccc--CCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            9999999999988876543  468999999997  556888898886  479999999985

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.48  E-value=1.4e-13  Score=114.27  Aligned_cols=124  Identities=12%  Similarity=0.001  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      ++.|...+.+..| ...++.+|||+|||+               |..++++|+.   +.+|||+|+|+++++.|++..+.
T Consensus         4 ~~~~~~~~~~~~l-~~~~~~rvLd~GCG~---------------G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~   64 (201)
T d1pjza_           4 EVNKDLQQYWSSL-NVVPGARVLVPLCGK---------------SQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGE   64 (201)
T ss_dssp             SSTHHHHHHHHHH-CCCTTCEEEETTTCC---------------SHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCS
T ss_pred             hHHHHHHHHHHHc-CCCCCCEEEEecCcC---------------CHHHHHHHHc---CCceEeecccHHHHHHHHHHhcc
Confidence            5667766666554 456778999999999               9999999986   68999999999999999998876


Q ss_pred             hCC-----------CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          182 AGV-----------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       182 ~gl-----------~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.           ...+++..+|+.+..+..     ...||.|+....     ...+..+++.+.+.|||||.+++...
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~-----~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~  139 (201)
T d1pjza_          65 QPHITSQGDFKVYAAPGIEIWCGDFFALTARD-----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL  139 (201)
T ss_dssp             CSEEEEETTEEEEECSSSEEEEECCSSSTHHH-----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             ccchhhhhhhhhccccccceeccccccccccc-----ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence            443           234678899887754443     468999986432     34578899999999999999877655


Q ss_pred             cCCC
Q 022597          246 LWHG  249 (294)
Q Consensus       246 l~~g  249 (294)
                      .+..
T Consensus       140 ~~~~  143 (201)
T d1pjza_         140 EYDQ  143 (201)
T ss_dssp             SSCS
T ss_pred             cccc
Confidence            4433

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=9.1e-14  Score=121.00  Aligned_cols=101  Identities=16%  Similarity=0.256  Sum_probs=84.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++++||||||||               |..+..+++.   +.+|+|||+|+++++.|+++++..++  +++++++|+.+.
T Consensus        41 ~~~~iLDiGcGt---------------G~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l  100 (251)
T d1wzna1          41 EVRRVLDLACGT---------------GIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEI  100 (251)
T ss_dssp             CCCEEEEETCTT---------------CHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGC
T ss_pred             CCCEEEEeCCCC---------------Cccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhc
Confidence            456899999999               9999998884   57899999999999999999998777  599999999775


Q ss_pred             HHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .  +     .++||+|++-..      .++....++.+.+.|+|||+++++-..
T Consensus       101 ~--~-----~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         101 A--F-----KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             C--C-----CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             c--c-----ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            2  1     468999987422      345678999999999999999997543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.46  E-value=4e-13  Score=116.20  Aligned_cols=105  Identities=9%  Similarity=0.116  Sum_probs=89.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ++.+|||+||||               |..+..+++... ++.+|+|+|+|+++++.|+++++..+...++++..+|..+
T Consensus        39 ~~~~vLDlGCGt---------------G~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~  103 (225)
T d1im8a_          39 ADSNVYDLGCSR---------------GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH  103 (225)
T ss_dssp             TTCEEEEESCTT---------------CHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT
T ss_pred             CCCEEEEeccch---------------hhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc
Confidence            456999999999               999999998763 5789999999999999999999998888889999888865


Q ss_pred             hHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .        +.+.+|++++..     ..++...+++.+.+.|+|||.+++.+..
T Consensus       104 ~--------~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~  149 (225)
T d1im8a_         104 V--------EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKF  149 (225)
T ss_dssp             C--------CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             c--------ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccc
Confidence            4        146889887643     2457789999999999999999997654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=3e-13  Score=124.56  Aligned_cols=111  Identities=24%  Similarity=0.357  Sum_probs=94.4

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      .++...+++|||+|||+               |..+++++..   +.+|+++|.|+++++.|+++++.+|+. +++++.+
T Consensus       140 ~~~~~~g~rVLDl~~gt---------------G~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~  200 (318)
T d1wxxa2         140 YMERFRGERALDVFSYA---------------GGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEA  200 (318)
T ss_dssp             HGGGCCEEEEEEETCTT---------------THHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEES
T ss_pred             HHHHhCCCeeeccCCCC---------------cHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCC-Ccceeec
Confidence            34455778999999999               9888888764   579999999999999999999999996 5999999


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCC------------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAE------------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~------------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      |+.+.++.+...  .++||+|++|++            .+.|.+++..+.++|+|||++++...
T Consensus       201 d~~~~~~~~~~~--~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         201 NAFDLLRRLEKE--GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             CHHHHHHHHHHT--TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cHHHHhhhhHhh--hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            999988776543  478999999986            23477888899999999999998765

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.43  E-value=2.3e-13  Score=118.97  Aligned_cols=98  Identities=13%  Similarity=0.212  Sum_probs=82.1

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++++|||+|||+               |..+..+++.   +.+|+|+|+|+++++.|+++++..|+  +++++++|+.+.
T Consensus        37 ~~~~vLDiGCG~---------------G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~   96 (246)
T d1y8ca_          37 VFDDYLDLACGT---------------GNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNL   96 (246)
T ss_dssp             CTTEEEEETCTT---------------STTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGC
T ss_pred             CCCeEEEEeCcC---------------CHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhhh
Confidence            456999999999               9999999875   46899999999999999999998776  599999999764


Q ss_pred             HHHHhhcCCCCceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~-------~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .  +     .++||+|++-..       ..+...+|+.+.+.|+|||.++++
T Consensus        97 ~--~-----~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          97 N--I-----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             C--C-----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             c--c-----cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            1  1     478999987322       345677999999999999999975

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.42  E-value=1.2e-13  Score=124.30  Aligned_cols=107  Identities=20%  Similarity=0.309  Sum_probs=90.6

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.++.+|||||||+               |..+..++...+.+++|+++|+++.+++.|+++++..+.  ++++..+|+.
T Consensus        25 ~~~~~~ILDiGcG~---------------G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~   87 (281)
T d2gh1a1          25 ITKPVHIVDYGCGY---------------GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDAT   87 (281)
T ss_dssp             CCSCCEEEEETCTT---------------THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTT
T ss_pred             cCCcCEEEEecCcC---------------CHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccc
Confidence            45678999999999               999999999888788999999999999999999998776  5999999987


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          197 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      +..  +     .++||+|+....   ..+....++.+.+.|||||.+++.+..|
T Consensus        88 ~~~--~-----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          88 EIE--L-----NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             TCC--C-----SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             ccc--c-----cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence            541  1     468999987654   3457789999999999999998876544

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.40  E-value=1.6e-12  Score=119.79  Aligned_cols=122  Identities=17%  Similarity=0.185  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHH-hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC
Q 022597          105 PDQAQLLAMLV-QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG  183 (294)
Q Consensus       105 ~~~~~lL~~l~-~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g  183 (294)
                      .++...-..++ ...++++|||++||+               |..+++++..-  ..+|+++|+++..++.|+++++.+|
T Consensus       129 lDqR~~r~~l~~~~~~g~~VLdlf~~~---------------G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~  191 (317)
T d2b78a2         129 LDQRQVRNELINGSAAGKTVLNLFSYT---------------AAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANH  191 (317)
T ss_dssp             GGGHHHHHHHHHTTTBTCEEEEETCTT---------------THHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhCCCceeecCCCC---------------cHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhc
Confidence            45554444443 345678999999999               98888776632  4589999999999999999999999


Q ss_pred             CC-CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          184 VS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       184 l~-~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~------------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +. .+++++.+|+.+.++.+...  ..+||+|++|++.            ++|.++++.+.++|+|||++++...
T Consensus       192 l~~~~~~~i~~d~~~~l~~~~~~--~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         192 LDMANHQLVVMDVFDYFKYARRH--HLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             CCCTTEEEEESCHHHHHHHHHHT--TCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccCcceEEEEccHHHHHHHHHhh--cCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            95 57999999999999877654  3689999999872            3588899999999999999998665

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.39  E-value=9.9e-13  Score=111.67  Aligned_cols=104  Identities=15%  Similarity=0.224  Sum_probs=87.3

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++.+|||||||+               |..+.++++.   +.+|+++|+++++++.++++.+..|++ ++++..+|..
T Consensus        28 ~~~~grvLDiGcG~---------------G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~   88 (198)
T d2i6ga1          28 VVAPGRTLDLGCGN---------------GRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLN   88 (198)
T ss_dssp             TSCSCEEEEETCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTT
T ss_pred             cCCCCcEEEECCCC---------------CHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheecc
Confidence            34566999999999               9999999985   579999999999999999999999986 5999999986


Q ss_pred             hhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          197 DSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +...       .++||+|+...     ++.....+++.+.+.|+|||++++....
T Consensus        89 ~~~~-------~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          89 TLTF-------DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             TCCC-------CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cccc-------cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            5421       57899998754     3456788999999999999999986543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.39  E-value=8.1e-13  Score=112.31  Aligned_cols=101  Identities=12%  Similarity=0.148  Sum_probs=82.7

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +..+|||||||+               |..+..+++.   +.+|+|+|+|+++++.|+++....+.  ++.++.+|+.+.
T Consensus        37 ~~~~ILDiGcG~---------------G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l   96 (226)
T d1ve3a1          37 KRGKVLDLACGV---------------GGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKL   96 (226)
T ss_dssp             SCCEEEEETCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSC
T ss_pred             CCCEEEEECCCc---------------chhhhhHhhh---hcccccccccccchhhhhhhhccccc--cccccccccccc
Confidence            446999999999               9999998874   57999999999999999999988774  478888998764


Q ss_pred             HHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..      ..++||+|+....     ..+...+++.+.++|+|||.++++..
T Consensus        97 ~~------~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~  142 (226)
T d1ve3a1          97 SF------EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFT  142 (226)
T ss_dssp             CS------CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cc------cCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence            21      2589999987543     23567789999999999999988754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.39  E-value=1.5e-12  Score=109.68  Aligned_cols=113  Identities=20%  Similarity=0.231  Sum_probs=81.7

Q ss_pred             HHHHHHH-hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          109 QLLAMLV-QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       109 ~lL~~l~-~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      .+..++. ++..+.+|||+|||+               |..++..+..   +++++++|.|+++++.++++++..|+.++
T Consensus        30 ~lf~~l~~~~~~g~~vLDl~~G~---------------G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~   91 (171)
T d1ws6a1          30 ALFDYLRLRYPRRGRFLDPFAGS---------------GAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGAR   91 (171)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCSS---------------CHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCE
T ss_pred             HHHHHhhccccCCCeEEEecccc---------------chhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccc
Confidence            3333444 334677999999999               9888875553   57899999999999999999999999876


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-ccchHHHHHHHH--hcccCCeEEEEe
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE-KRMYQEYFELLL--QLIRVGGIIVID  243 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-~~~~~~~~~~~~--~lLkpgG~ivid  243 (294)
                      +....+|.  .+.....  ..++||+||+|++ ..+..+.+..+.  .+|+|||++++.
T Consensus        92 v~~~~~d~--~~~~~~~--~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1          92 VVALPVEV--FLPEAKA--QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             EECSCHHH--HHHHHHH--TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             eeeeehhc--ccccccc--cCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            65554443  3332221  1578999999987 233444455443  579999999985

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.38  E-value=9.5e-13  Score=116.43  Aligned_cols=109  Identities=19%  Similarity=0.203  Sum_probs=90.6

Q ss_pred             HHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          113 MLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       113 ~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      ......+.++|||||||+               |..+..+++..| +.+++++|+ +++++.+++++...|+.++++++.
T Consensus        74 ~~~d~~~~~~VLDvGcG~---------------G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~  136 (253)
T d1tw3a2          74 AAYDWTNVRHVLDVGGGK---------------GGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVE  136 (253)
T ss_dssp             HHSCCTTCSEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEE
T ss_pred             hhcCCccCCEEEEeCCCC---------------CHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhcc
Confidence            334456678999999999               999999999986 789999998 779999999999999999999999


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +|+.+..        ..+||+|++..-     .+....+++.+.+.|+|||.+++.+..
T Consensus       137 ~D~~~~~--------~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         137 GDFFEPL--------PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             CCTTSCC--------SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccchhhc--------ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            9986531        467999987533     334567899999999999998886653

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.37  E-value=1.6e-12  Score=112.80  Aligned_cols=101  Identities=17%  Similarity=0.160  Sum_probs=86.2

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      ..|||||||+               |..++.+|...| +..++|||+++.++..|.+.+++.|+. +++++++|+.+...
T Consensus        31 PlvLeIGcG~---------------G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~   93 (204)
T d2fcaa1          31 PIHIEVGTGK---------------GQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTD   93 (204)
T ss_dssp             CEEEEECCTT---------------SHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHH
T ss_pred             ceEEEEEecC---------------cHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhhc
Confidence            4799999999               999999999976 789999999999999999999999996 69999999987665


Q ss_pred             HHhhcCCCCceeEEEEcCC---cc--c------hHHHHHHHHhcccCCeEEEE
Q 022597          201 ALILNGEASSYDFAFVDAE---KR--M------YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~---~~--~------~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+    ..+++|.|++..+   ..  +      ..++++.+.+.|||||.+.+
T Consensus        94 ~~----~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1          94 VF----EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             HC----CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             cc----CchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence            44    2678998876533   11  1      36899999999999999977

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.36  E-value=1.2e-12  Score=114.55  Aligned_cols=116  Identities=23%  Similarity=0.391  Sum_probs=94.4

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ....|..-..+..++++.++.+|||||||+               ||.+..++...  +++|+++|.+++.++.|+++++
T Consensus        60 ~is~P~~~a~ml~~L~l~~g~~VLeIGsGs---------------GY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~  122 (215)
T d1jg1a_          60 TVSAPHMVAIMLEIANLKPGMNILEVGTGS---------------GWNAALISEIV--KTDVYTIERIPELVEFAKRNLE  122 (215)
T ss_dssp             EECCHHHHHHHHHHHTCCTTCCEEEECCTT---------------SHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHhhccCccceEEEecCCC---------------ChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHH
Confidence            345677655555667788889999999999               99999999865  3789999999999999999999


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.|+. +++++++|..+..+.      .++||.|++.+.....++   .+...|+|||.+++-
T Consensus       123 ~~g~~-nv~~~~gd~~~g~~~------~~pfD~Iiv~~a~~~ip~---~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         123 RAGVK-NVHVILGDGSKGFPP------KAPYDVIIVTAGAPKIPE---PLIEQLKIGGKLIIP  175 (215)
T ss_dssp             HTTCC-SEEEEESCGGGCCGG------GCCEEEEEECSBBSSCCH---HHHHTEEEEEEEEEE
T ss_pred             HcCCc-eeEEEECccccCCcc------cCcceeEEeecccccCCH---HHHHhcCCCCEEEEE
Confidence            99986 699999999765433      489999999877554433   356779999999974

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.35  E-value=3.8e-12  Score=117.07  Aligned_cols=109  Identities=15%  Similarity=0.165  Sum_probs=89.9

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC-cEEEEEcch
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~-~v~~~~gda  195 (294)
                      ..++++|||++|||               |..++.++..   +++||+||.|+..++.|++|++.+|+.+ +++++++|+
T Consensus       130 ~~~~~rVLdlf~~t---------------G~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~  191 (309)
T d2igta1         130 ADRPLKVLNLFGYT---------------GVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA  191 (309)
T ss_dssp             SSSCCEEEEETCTT---------------CHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH
T ss_pred             ccCCCeEEEecCCC---------------cHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCH
Confidence            34678999999999               9999988764   5699999999999999999999999975 699999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCc-------------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEK-------------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~-------------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.++.....  ..+||+|++|++.             .++..+++.+.++|+|||.+++-+.
T Consensus       192 ~~~l~~~~~~--~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         192 MKFIQREERR--GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHHHHHHHH--TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HHhHHHHhhc--CCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            9998776544  4789999999871             1245566777899999997665544

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.35  E-value=8.9e-13  Score=116.16  Aligned_cols=103  Identities=12%  Similarity=0.068  Sum_probs=83.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++++|||+|||+               |..+..++..-  .++|+|+|+|+++++.|++.++..+...++.+.++|+...
T Consensus        24 ~~~~VLDlGCG~---------------G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~   86 (252)
T d1ri5a_          24 RGDSVLDLGCGK---------------GGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR   86 (252)
T ss_dssp             TTCEEEEETCTT---------------TTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS
T ss_pred             CcCEEEEecccC---------------cHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhh
Confidence            567999999999               88888887753  3689999999999999999999888888899999998543


Q ss_pred             HHHHhhcCCCCceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~-------~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ...     ..++||+|++...       ......+++.+.+.|+|||+++++
T Consensus        87 ~~~-----~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          87 HMD-----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             CCC-----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccc-----ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            111     1468999987533       234568899999999999999984

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=3.3e-12  Score=115.58  Aligned_cols=116  Identities=17%  Similarity=0.266  Sum_probs=95.8

Q ss_pred             CHHHHHHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          104 SPDQAQLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       104 ~~~~~~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .|++..++.......  .+.+|||+|||+               |..++.++...| +.+|+++|+|+++++.|++|+++
T Consensus        91 RpeTE~lv~~~l~~~~~~~~~vlDlGtGS---------------G~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~  154 (274)
T d2b3ta1          91 RPDTECLVEQALARLPEQPCRILDLGTGT---------------GAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQH  154 (274)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTT---------------SHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhHhhhhcccccceeeeehhh---------------hHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHH
Confidence            467777776665543  345899999999               999999999887 78999999999999999999999


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------------------------cchHHHHHHHHhc
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQL  233 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------------------------~~~~~~~~~~~~l  233 (294)
                      +|++ +++++++|..+.++       ..+||+|+.+++-                            ..|..+++.+.++
T Consensus       155 ~~~~-~v~~~~~d~~~~~~-------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~  226 (274)
T d2b3ta1         155 LAIK-NIHILQSDWFSALA-------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNA  226 (274)
T ss_dssp             HTCC-SEEEECCSTTGGGT-------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGG
T ss_pred             hCcc-cceeeecccccccC-------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHh
Confidence            9995 69999999876542       4689999988651                            1256788888899


Q ss_pred             ccCCeEEEEe
Q 022597          234 IRVGGIIVID  243 (294)
Q Consensus       234 LkpgG~ivid  243 (294)
                      |+|||.+++.
T Consensus       227 L~~~G~l~lE  236 (274)
T d2b3ta1         227 LVSGGFLLLE  236 (274)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCCCCEEEEE
Confidence            9999999984

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=4.9e-12  Score=107.41  Aligned_cols=113  Identities=15%  Similarity=0.196  Sum_probs=90.9

Q ss_pred             HHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCc
Q 022597          108 AQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK  187 (294)
Q Consensus       108 ~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~  187 (294)
                      ..+...+-......+|||++||+               |..++..+..-  ..+|+.||.|++.++.++++++..+.. +
T Consensus        32 e~lfn~l~~~~~~~~vLDlfaGs---------------G~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~~~~-~   93 (183)
T d2fpoa1          32 ETLFNWLAPVIVDAQCLDCFAGS---------------GALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKAG-N   93 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTT---------------CHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCC-S
T ss_pred             HHHHhhhhcccchhhhhhhhccc---------------cceeeeEEecC--cceeEEEEEeechhhHHHHHHhhcccc-c
Confidence            44444555556788999999999               99888766532  358999999999999999999998875 5


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHh--cccCCeEEEEe
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQ--LIRVGGIIVID  243 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~--lLkpgG~ivid  243 (294)
                      ++++.+|+.+.+...     ..+||+||+|++  ...+.+.++.+..  +|+++|++++.
T Consensus        94 ~~ii~~d~~~~l~~~-----~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1          94 ARVVNSNAMSFLAQK-----GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             EEEECSCHHHHHSSC-----CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             eeeeeeccccccccc-----ccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence            899999988766432     578999999997  4457788888864  69999999985

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.33  E-value=3.3e-12  Score=114.52  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=88.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++|||+|||+               |+.++.+|...  .++|+++|+||++++.++++++.+|+.++++++++|+.+
T Consensus       106 ~~g~~VlD~~aG~---------------G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~  168 (260)
T d2frna1         106 KPDELVVDMFAGI---------------GHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD  168 (260)
T ss_dssp             CTTCEEEETTCTT---------------TTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT
T ss_pred             CCccEEEECcceE---------------cHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHH
Confidence            4678999999999               99999998763  479999999999999999999999999999999999987


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+       .+.||.|+++.+.. ..++++.+.++|++||++.++..
T Consensus       169 ~~~-------~~~~D~Ii~~~p~~-~~~~l~~a~~~l~~gG~lh~~~~  208 (260)
T d2frna1         169 FPG-------ENIADRILMGYVVR-THEFIPKALSIAKDGAIIHYHNT  208 (260)
T ss_dssp             CCC-------CSCEEEEEECCCSS-GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             hcc-------CCCCCEEEECCCCc-hHHHHHHHHhhcCCCCEEEEEec
Confidence            632       47899999987643 45678889999999999987654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.32  E-value=8.3e-13  Score=116.10  Aligned_cols=117  Identities=19%  Similarity=0.256  Sum_probs=90.6

Q ss_pred             CCHH-HHHHHHHHH-hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-----CcEEEEEeCChHHHHHH
Q 022597          103 VSPD-QAQLLAMLV-QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-----SGCLVACERDARSLEVA  175 (294)
Q Consensus       103 v~~~-~~~lL~~l~-~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-----~~~v~~id~~~~~~~~A  175 (294)
                      ..|. .+++|..|. .+.++.+|||||||+               ||.+..++....+     +.+|+++|.+++.++.|
T Consensus        62 s~P~~~a~~l~~L~~~l~~g~~VLeIGtGs---------------GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a  126 (223)
T d1r18a_          62 SAPHMHAFALEYLRDHLKPGARILDVGSGS---------------GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS  126 (223)
T ss_dssp             CCHHHHHHHHHHTTTTCCTTCEEEEESCTT---------------SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHH
T ss_pred             ehhhhHHHHHHHHhhccCCCCeEEEecCCC---------------CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHH
Confidence            4554 455565553 566788999999999               9999999887632     35899999999999999


Q ss_pred             HHHHHHhCCC----CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          176 KKYYERAGVS----HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       176 ~~~~~~~gl~----~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++++...++.    .++.++++|..+..+.      .++||.|++.+.....++   .+.+.|+|||.+|+-
T Consensus       127 ~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~------~~~fD~Iiv~~a~~~~p~---~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         127 KANLNTDDRSMLDSGQLLIVEGDGRKGYPP------NAPYNAIHVGAAAPDTPT---ELINQLASGGRLIVP  189 (223)
T ss_dssp             HHHHHHHHHHHHHHTSEEEEESCGGGCCGG------GCSEEEEEECSCBSSCCH---HHHHTEEEEEEEEEE
T ss_pred             HHhhhhcchhhcCccEEEEEeccccccccc------ccceeeEEEEeechhchH---HHHHhcCCCcEEEEE
Confidence            9987764332    3699999999765432      478999999987655443   467899999999873

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.32  E-value=2.2e-12  Score=113.58  Aligned_cols=112  Identities=18%  Similarity=0.250  Sum_probs=88.3

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      ...|.....+...+.+.++.+|||||||+               ||.|..++...   ++|+++|.+++..+.|++++..
T Consensus        53 ~~~p~~~a~ml~~L~l~~g~~VLdIG~Gs---------------Gy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~  114 (224)
T d1vbfa_          53 TTALNLGIFMLDELDLHKGQKVLEIGTGI---------------GYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY  114 (224)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTT---------------SHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT
T ss_pred             eehhhhHHHHHHHhhhcccceEEEecCCC---------------CHHHHHHHHHh---cccccccccHHHHHHHHHHHhc
Confidence            34566544455566788889999999999               99999988863   7999999999999999998764


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                        . ++++++++|.....+.      .++||.|++.+..+..+   +.+.+.|+|||.+|+-
T Consensus       115 --~-~nv~~~~~d~~~g~~~------~~pfD~Iiv~~a~~~ip---~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         115 --Y-NNIKLILGDGTLGYEE------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             --C-SSEEEEESCGGGCCGG------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             --c-cccccccCchhhcchh------hhhHHHHHhhcchhhhh---HHHHHhcCCCCEEEEE
Confidence              2 5799999998764332      47899999987655443   3466889999999984

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.6e-12  Score=109.05  Aligned_cols=125  Identities=9%  Similarity=-0.055  Sum_probs=98.7

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      ...|...+.+..+....++.+|||+|||+               |..+++++..   +.+|||||+|+++++.|++....
T Consensus        28 ~~~~~l~~~~~~~l~~~~~~rvLd~GCG~---------------G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~   89 (229)
T d2bzga1          28 QGHQLLKKHLDTFLKGKSGLRVFFPLCGK---------------AVEMKWFADR---GHSVVGVEISELGIQEFFTEQNL   89 (229)
T ss_dssp             TCCHHHHHHHHHHHTTCCSCEEEETTCTT---------------CTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHhcCCCCCCEEEEeCCCC---------------cHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhc
Confidence            45677777777777777888999999999               9999999984   67999999999999999887654


Q ss_pred             hC----------------CCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEE
Q 022597          182 AG----------------VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGII  240 (294)
Q Consensus       182 ~g----------------l~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~i  240 (294)
                      .+                ...++++.++|..+.....     .+.||+|+.-.     .......+++.+.++|+|||.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~-----~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~  164 (229)
T d2bzga1          90 SYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTN-----IGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQY  164 (229)
T ss_dssp             CEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSC-----CCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEE
T ss_pred             cccccchhcccccceeeecCCcEEEEEcchhhccccc-----cCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceE
Confidence            32                1247999999987754322     57899997543     3566789999999999999998


Q ss_pred             EEecccCCC
Q 022597          241 VIDNVLWHG  249 (294)
Q Consensus       241 vid~vl~~g  249 (294)
                      ++....+.+
T Consensus       165 ~l~~~~~~~  173 (229)
T d2bzga1         165 LLCVLSYDP  173 (229)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEcccCC
Confidence            776655433

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.6e-12  Score=119.84  Aligned_cols=176  Identities=12%  Similarity=0.060  Sum_probs=118.9

Q ss_pred             ccccccccccccccccccccCCChhHHHHHHhc-CCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhhCCCeEEE
Q 022597           47 TTNCCVSSAHDEKYSNKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIE  125 (294)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~Y~~~~-~~~~~~L~~~~~~~~~~~~~~~~v~~~~~~lL~~l~~~~~~~~vLE  125 (294)
                      .++.+|+.+|+++....+..++...+ ++.++. ..+++.+........   ..--...+....-+...+.+.+..+|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~y~~~~~---~~~~e~~~~~~~~~~~~~~l~~~~~vlD  157 (328)
T d1nw3a_          82 HQLWKGTTQPMKLNTRPSTGLLRHIL-QQVYNHSVTDPEKLNNYEPFSP---EVYGETSFDLVAQMIDEIKMTDDDLFVD  157 (328)
T ss_dssp             HHHHHTTSCCCCSSCCCCHHHHHHHH-HHHHHHHCSCGGGGGCSCSSST---TCCCCCCHHHHHHHHHHSCCCTTCEEEE
T ss_pred             HhhhccchhhHHhcccccHHHHHHHH-hhhhhhccCCHHHhccccCCCC---CchhhhHHHHHHHHHHHcCCCCCCEEEE
Confidence            34578899999988776655554443 555554 344444432111111   1111355555444445556777889999


Q ss_pred             EccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh-------CCC-CcEEEEEcchhh
Q 022597          126 VGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-------GVS-HKVKIKHGLAAD  197 (294)
Q Consensus       126 iG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~-------gl~-~~v~~~~gda~~  197 (294)
                      +|||+               |..++.+++..+ ..+++|||+++++++.|++..++.       |.. .++++++||+.+
T Consensus       158 ~GcG~---------------G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~  221 (328)
T d1nw3a_         158 LGSGV---------------GQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  221 (328)
T ss_dssp             ETCTT---------------SHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred             cCCCC---------------CHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence            99999               999999998775 568999999999999998887654       332 479999999976


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ..-.-.    ....|+||+...  .+.....+..+.+.|||||.||+...+
T Consensus       222 ~~~~~~----~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         222 EEWRER----IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             HHHHHH----HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             cccccc----cCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            421100    124688998643  345667888899999999999986543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.3e-13  Score=114.85  Aligned_cols=106  Identities=21%  Similarity=0.207  Sum_probs=84.8

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..+..+|||||||+               |..+..++...  ..+|++||+|+++++.|+++++..+.. +++++++|+.
T Consensus        58 ~~~~~~vLDiGcG~---------------G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~  119 (222)
T d2ex4a1          58 KTGTSCALDCGAGI---------------GRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQ  119 (222)
T ss_dssp             CCCCSEEEEETCTT---------------THHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGG
T ss_pred             CCCCCEEEEeccCC---------------CHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccc-cccccccccc
Confidence            34567999999999               98888776543  368999999999999999999887764 6899999998


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +...      +.++||+|++...     .+...++++.+.+.|+|||.+++.+..
T Consensus       120 ~~~~------~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~  168 (222)
T d2ex4a1         120 DFTP------EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  168 (222)
T ss_dssp             GCCC------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccc------ccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence            7521      2589999987543     234567999999999999998886543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=1.7e-11  Score=110.08  Aligned_cols=118  Identities=18%  Similarity=0.179  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC-
Q 022597          107 QAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-  185 (294)
Q Consensus       107 ~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~-  185 (294)
                      ...++..+++..++++|||+|||+               |..+..++..   +.+|+|+|+|+++++.|+++....+.. 
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~---------------G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~  105 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGT---------------GVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEP  105 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCC---------------cHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhccccc
Confidence            344555666667788999999999               9999999875   579999999999999999999887654 


Q ss_pred             --CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC-----------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          186 --HKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       186 --~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~-----------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                        .+..+...+....-..+.   ..++||.|++-..           ..+...+++.+.+.|+|||+++++..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~---~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  175 (292)
T d1xvaa_         106 AFDKWVIEEANWLTLDKDVP---AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  175 (292)
T ss_dssp             HHHTCEEEECCGGGHHHHSC---CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccceeeeeeccccccccccC---CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence              234556666654332221   1478999986321           23466799999999999999999643

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.26  E-value=1e-11  Score=107.65  Aligned_cols=105  Identities=18%  Similarity=0.176  Sum_probs=85.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++.+|||+|||+               |+.+..++...+ +++|+|+|+++++++.|++..+..+   ++.++.+|+.+
T Consensus        55 kpg~~VLDlGcG~---------------G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~  115 (209)
T d1nt2a_          55 RGDERVLYLGAAS---------------GTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASK  115 (209)
T ss_dssp             CSSCEEEEETCTT---------------SHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTC
T ss_pred             CCCCEEEEeCCcC---------------CHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccC
Confidence            3556999999999               999999999886 6799999999999999999988754   69999999865


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-ccchHHHHHHHHhcccCCeEEEEec
Q 022597          198 SLKALILNGEASSYDFAFVDAE-KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ....   ......+|++|.+.. ......++..+.+.|||||.+++..
T Consensus       116 ~~~~---~~~~~~vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         116 PWKY---SGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             GGGT---TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccc---ccccceEEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            3211   111457888988854 5567788999999999999998764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.25  E-value=3.8e-12  Score=109.42  Aligned_cols=96  Identities=18%  Similarity=0.202  Sum_probs=75.9

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ++.+|||+|||+               |..+..++..   +.+|+|+|+++++++.|+++    +..   .++.+++.+.
T Consensus        42 ~~~~vLDiGcG~---------------G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~---~~~~~~~~~l   96 (246)
T d2avna1          42 NPCRVLDLGGGT---------------GKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVK---NVVEAKAEDL   96 (246)
T ss_dssp             SCCEEEEETCTT---------------CHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCS---CEEECCTTSC
T ss_pred             CCCEEEEECCCC---------------chhccccccc---ceEEEEeecccccccccccc----ccc---cccccccccc
Confidence            456999999999               9999999864   57999999999999999875    222   2567888664


Q ss_pred             HHHHhhcCCCCceeEEEEcCC----ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAE----KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~----~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                       +     -+.++||+|+.-..    ..+...+++.+.++|+|||+++++..
T Consensus        97 -~-----~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1          97 -P-----FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             -C-----SCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -c-----cccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence             1     12589999986432    34678899999999999999998643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.25  E-value=1.7e-11  Score=106.15  Aligned_cols=101  Identities=17%  Similarity=0.198  Sum_probs=85.6

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      ..|||||||+               |..++.+|+..| +..++|||+++..+..|.+.+++.|++ +++++++|+.+...
T Consensus        33 plvLdIGcG~---------------G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~   95 (204)
T d1yzha1          33 PIHVEVGSGK---------------GAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTD   95 (204)
T ss_dssp             CEEEEESCTT---------------SHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGG
T ss_pred             CeEEEEeccC---------------CHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhh
Confidence            4799999999               999999999987 789999999999999999999999996 69999999987653


Q ss_pred             HHhhcCCCCceeEEEEc---CCcc--c------hHHHHHHHHhcccCCeEEEE
Q 022597          201 ALILNGEASSYDFAFVD---AEKR--M------YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD---~~~~--~------~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+    +.+++|.|++.   ++..  +      ..++++.+.+.|+|||.+.+
T Consensus        96 ~~----~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1          96 YF----EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             TS----CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             hc----cCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            33    25788988764   3311  1      37899999999999999976

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.24  E-value=1.4e-11  Score=106.57  Aligned_cols=104  Identities=11%  Similarity=0.123  Sum_probs=81.7

Q ss_pred             HHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEE
Q 022597          111 LAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI  190 (294)
Q Consensus       111 L~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~  190 (294)
                      +..+....++++|||||||+               |..+..++..   +.+|+|+|+|+++++.|++..     .+++++
T Consensus        12 ~~~~~~~~~~~~VLDiGcG~---------------G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~-----~~~~~~   68 (225)
T d2p7ia1          12 VRAFTPFFRPGNLLELGSFK---------------GDFTSRLQEH---FNDITCVEASEEAISHAQGRL-----KDGITY   68 (225)
T ss_dssp             HHHHGGGCCSSCEEEESCTT---------------SHHHHHHTTT---CSCEEEEESCHHHHHHHHHHS-----CSCEEE
T ss_pred             HHHhhhhCCCCcEEEEeCCC---------------cHHHHHHHHc---CCeEEEEeCcHHHhhhhhccc-----cccccc
Confidence            34445566788999999999               9998887764   468999999999999998764     346999


Q ss_pred             EEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHH-hcccCCeEEEEec
Q 022597          191 KHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLL-QLIRVGGIIVIDN  244 (294)
Q Consensus       191 ~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~-~lLkpgG~ivid~  244 (294)
                      +++++.+..       .+++||+|++..-   ..+...++..+. ++|+|||.+++.-
T Consensus        69 ~~~~~~~~~-------~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~  119 (225)
T d2p7ia1          69 IHSRFEDAQ-------LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC  119 (225)
T ss_dssp             EESCGGGCC-------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccccccccc-------cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence            999987642       1578999987543   345677888887 7899999999863

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.22  E-value=3.1e-11  Score=107.23  Aligned_cols=105  Identities=19%  Similarity=0.204  Sum_probs=88.3

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...+.++|||||||+               |..+..++++.| +.+++++|+ |+.++.|+++++..|+.+++++..+|.
T Consensus        78 d~~~~~~vlDvG~G~---------------G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~  140 (256)
T d1qzza2          78 DWSAVRHVLDVGGGN---------------GGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF  140 (256)
T ss_dssp             CCTTCCEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             CCccCCEEEEECCCC---------------CHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeec
Confidence            445678999999999               999999999987 789999998 889999999999999999999999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.+        ..+||+|++..     +.+....+++.+.+.|+|||.+++.+.
T Consensus       141 ~~~~--------p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         141 FKPL--------PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             TSCC--------SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccc--------cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            6531        35699998643     234457889999999999998777554

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=1.3e-11  Score=108.64  Aligned_cols=106  Identities=15%  Similarity=0.139  Sum_probs=85.8

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.++.+|||+|||+               |+.+..++...+++|+|+++|+++++++.++++.+..+   .+..+.+|+.
T Consensus        71 i~pG~~VLDlGaGs---------------G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~  132 (227)
T d1g8aa_          71 IKPGKSVLYLGIAS---------------GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDAT  132 (227)
T ss_dssp             CCTTCEEEEETTTS---------------TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTT
T ss_pred             cCCCCEEEEeccCC---------------CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECC
Confidence            44667999999999               99999999999889999999999999999999877543   5777788875


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-ccchHHHHHHHHhcccCCeEEEEe
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-KRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .... ..  .....+|+||.|.. ......+++.+.+.|+|||.+++.
T Consensus       133 ~~~~-~~--~~~~~vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         133 KPEE-YR--ALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CGGG-GT--TTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             Cccc-cc--ccccceEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            4321 10  11478999999976 345677899999999999999875

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=6.8e-11  Score=108.25  Aligned_cols=106  Identities=20%  Similarity=0.231  Sum_probs=85.4

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++|||||||+               |..++.++++.  ..+|+++|.++ +++.|++..+..|+.+++++++++.
T Consensus        35 ~~~~~~~VLDlGcGt---------------G~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~   96 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGT---------------GILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL   96 (328)
T ss_dssp             HHHTTCEEEEETCTT---------------SHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT
T ss_pred             ccCCcCEEEEeCCCC---------------CHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh
Confidence            445778999999999               99999888753  35899999996 6789999999999999999999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+..      .+.++||+|+...-      ......++..+.++|||||+++-+.+
T Consensus        97 ~~l~------~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~  146 (328)
T d1g6q1_          97 EDVH------LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKC  146 (328)
T ss_dssp             TTSC------CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             hhcc------CcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeeec
Confidence            7652      12578999987532      34567778888899999999975443

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.16  E-value=1.3e-10  Score=98.39  Aligned_cols=122  Identities=15%  Similarity=0.185  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      .+.-...+..++-....+.+|||+.|||               |..++..+..-  ..+|+.||.|.+.++..+++++..
T Consensus        27 ~~~vrealFn~l~~~~~~~~vLDlFaGs---------------G~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l   89 (183)
T d2ifta1          27 GDRVKETLFNWLMPYIHQSECLDGFAGS---------------GSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTL   89 (183)
T ss_dssp             -CHHHHHHHHHHHHHHTTCEEEETTCTT---------------CHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHhhhhcccceEeecccCc---------------cceeeeeeeec--ceeeEEeecccchhhhHhhHHhhh
Confidence            3344455555555556778999999999               98888877642  469999999999999999999999


Q ss_pred             CCCC-cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHH--hcccCCeEEEEec
Q 022597          183 GVSH-KVKIKHGLAADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLL--QLIRVGGIIVIDN  244 (294)
Q Consensus       183 gl~~-~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~--~lLkpgG~ivid~  244 (294)
                      +..+ ...+...|+.+.+...   ....+||+||+|++  ...+.+.++.+.  .+|+++|+++++.
T Consensus        90 ~~~~~~~~~~~~d~~~~l~~~---~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~  153 (183)
T d2ifta1          90 KCSSEQAEVINQSSLDFLKQP---QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET  153 (183)
T ss_dssp             TCCTTTEEEECSCHHHHTTSC---CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred             ccccccccccccccccccccc---ccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence            8865 5777777776554321   12457999999998  344778888886  4799999999863

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.16  E-value=2.2e-11  Score=107.16  Aligned_cols=107  Identities=14%  Similarity=0.098  Sum_probs=83.0

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.++.+|||+|||+               |+.+..++...+ ++.|+|+|+++++++.+++..+.   .+++..+.+|+.
T Consensus        72 ikpG~~VLDlGcGs---------------G~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~---~~ni~~i~~d~~  132 (230)
T d1g8sa_          72 IKRDSKILYLGASA---------------GTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE---RENIIPILGDAN  132 (230)
T ss_dssp             CCTTCEEEEESCCS---------------SHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT---CTTEEEEECCTT
T ss_pred             CCCCCEEEEeCEEc---------------CHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhh---hcccceEEEeec
Confidence            44567999999999               999999999865 78999999999999999887654   346888888887


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC-ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAE-KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~-~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ...+.. .  ....+|++|.+.. ......++..+.+.|||||.+++..-
T Consensus       133 ~~~~~~-~--~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k  179 (230)
T d1g8sa_         133 KPQEYA-N--IVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             CGGGGT-T--TCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCcccc-c--ccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEee
Confidence            653321 1  1245666776654 45577889999999999999887643

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.16  E-value=2.7e-11  Score=107.46  Aligned_cols=105  Identities=16%  Similarity=0.142  Sum_probs=82.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+..+|||+|||+               |..+..++....  .+|+++|+++++++.|+++++.   ..+++++++|+.+
T Consensus        92 ~~~~~vLD~GcG~---------------G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~---~~~~~~~~~d~~~  151 (254)
T d1xtpa_          92 HGTSRALDCGAGI---------------GRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG---MPVGKFILASMET  151 (254)
T ss_dssp             CCCSEEEEETCTT---------------THHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT---SSEEEEEESCGGG
T ss_pred             CCCCeEEEecccC---------------ChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccc---cccceeEEccccc
Confidence            3567999999999               999998876543  5899999999999999987653   2358999999876


Q ss_pred             hHHHHhhcCCCCceeEEEEcCC-----ccchHHHHHHHHhcccCCeEEEEecccCC
Q 022597          198 SLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH  248 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~-----~~~~~~~~~~~~~lLkpgG~ivid~vl~~  248 (294)
                      ...      +.++||+|++...     ..+...+++.+.+.|+|||.+++.+....
T Consensus       152 ~~~------~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~  201 (254)
T d1xtpa_         152 ATL------PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST  201 (254)
T ss_dssp             CCC------CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred             ccc------CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCC
Confidence            421      2578999987643     23356889999999999999998665443

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=5e-11  Score=108.71  Aligned_cols=105  Identities=16%  Similarity=0.155  Sum_probs=85.0

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++++|||||||+               |..++.+++..  ..+|+++|.++. ...++++++.+|+.++++++++++.
T Consensus        31 ~~~~~~VLDiGcG~---------------G~ls~~aa~~G--a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~   92 (316)
T d1oria_          31 LFKDKVVLDVGSGT---------------GILCMFAAKAG--ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVE   92 (316)
T ss_dssp             HHTTCEEEEETCTT---------------SHHHHHHHHTT--CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred             cCCcCEEEEEecCC---------------cHHHHHHHHhC--CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHH
Confidence            45778999999999               99999888753  358999999975 5788889999999999999999997


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +..      .+.++||+|+....      ....+.++..+.++|+|||.++-..+
T Consensus        93 ~~~------~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~  141 (316)
T d1oria_          93 EVE------LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA  141 (316)
T ss_dssp             TCC------CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             Hcc------cccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeE
Confidence            752      12478999987532      34577888889999999999985443

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.15  E-value=2.7e-11  Score=107.02  Aligned_cols=119  Identities=16%  Similarity=0.284  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC---CCCcEEEEEeCChHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL---PESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~---~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      -.|....++..++...+|++|||||++.               |.|+++++..+   ...++++++|+++.......   
T Consensus        64 k~p~d~~~~~eli~~~KPk~ILEIGv~~---------------GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~---  125 (232)
T d2bm8a1          64 KDPDTQAVYHDMLWELRPRTIVELGVYN---------------GGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---  125 (232)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEECCTT---------------SHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEECCCC---------------chHHHHHHHHHHhcCCCceEEecCcChhhhhhhh---
Confidence            3588888889999999999999999999               99999887654   45799999999986543221   


Q ss_pred             HHhCCCCcEEEEEcchhh--hHHHHhhcCCCCceeEEEEcCCccchHHHHHH-HHhcccCCeEEEEeccc
Q 022597          180 ERAGVSHKVKIKHGLAAD--SLKALILNGEASSYDFAFVDAEKRMYQEYFEL-LLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~--~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~-~~~lLkpgG~ivid~vl  246 (294)
                         ...++++++.||..+  .+..+    ....+|+||+|+.+.....+.+. ..++|++||+++++|+.
T Consensus       126 ---~~~~~I~~i~gDs~~~~~~~~l----~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         126 ---SDMENITLHQGDCSDLTTFEHL----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             ---GGCTTEEEEECCSSCSGGGGGG----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred             ---ccccceeeeecccccHHHHHHH----HhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence               234689999999754  22222    14568999999886554433332 45899999999998875

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=5.8e-11  Score=105.41  Aligned_cols=110  Identities=14%  Similarity=0.133  Sum_probs=81.3

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHC----C-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEE--EEE
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL----P-ESGCLVACERDARSLEVAKKYYERAGVSHKVK--IKH  192 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~----~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~--~~~  192 (294)
                      ..+|||||||+               |..+..++..+    + ...+++++|+++.+++.|++.++.......++  +..
T Consensus        41 ~~~VLDiGcG~---------------G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~  105 (280)
T d1jqea_          41 EIKILSIGGGA---------------GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHK  105 (280)
T ss_dssp             EEEEEEETCTT---------------SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEEC
T ss_pred             CCeEEEEcCCC---------------CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchh
Confidence            34899999999               99999887764    2 13578999999999999999987654334444  455


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEec
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .++.+.........+.++||+|+.-..   .++....++.+.++|+|||++++..
T Consensus       106 ~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~  160 (280)
T d1jqea_         106 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV  160 (280)
T ss_dssp             SCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEE
Confidence            555544443333334689999987533   3467899999999999999988753

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=5e-11  Score=106.33  Aligned_cols=106  Identities=19%  Similarity=0.208  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhh--hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597          107 QAQLLAMLVQI--LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV  184 (294)
Q Consensus       107 ~~~lL~~l~~~--~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl  184 (294)
                      ...+...+...  .++.+|||||||+               |..+..++...+ +.+++++|+++++++.|++..     
T Consensus        70 ~~~~~~~l~~~~~~~~~~iLDiGcG~---------------G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~-----  128 (268)
T d1p91a_          70 RDAIVAQLRERLDDKATAVLDIGCGE---------------GYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY-----  128 (268)
T ss_dssp             HHHHHHHHHHHSCTTCCEEEEETCTT---------------STTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeCCCC---------------cHHHHHHHHHCC-CCEEEEecchHhhhhhhhccc-----
Confidence            34444444443  3567999999999               999999999875 789999999999999988653     


Q ss_pred             CCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          185 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       185 ~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                       .++++..+|+.+..  +    .+++||+|+.......    ++.+.+.|||||++++..
T Consensus       129 -~~~~~~~~d~~~l~--~----~~~sfD~v~~~~~~~~----~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         129 -PQVTFCVASSHRLP--F----SDTSMDAIIRIYAPCK----AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             -TTSEEEECCTTSCS--B----CTTCEEEEEEESCCCC----HHHHHHHEEEEEEEEEEE
T ss_pred             -ccccceeeehhhcc--C----CCCCEEEEeecCCHHH----HHHHHHHhCCCcEEEEEe
Confidence             35899999987642  1    2688999997654444    456788999999999853

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=3.8e-11  Score=101.68  Aligned_cols=98  Identities=22%  Similarity=0.317  Sum_probs=75.7

Q ss_pred             HHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          114 LVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       114 l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      +..+.+..+|||||||+               |..+..+.       +++|+|+|+++++.|++.        +++++++
T Consensus        31 ~~~~~~~~~vLDiGcG~---------------G~~~~~~~-------~~~giD~s~~~~~~a~~~--------~~~~~~~   80 (208)
T d1vlma_          31 VKCLLPEGRGVEIGVGT---------------GRFAVPLK-------IKIGVEPSERMAEIARKR--------GVFVLKG   80 (208)
T ss_dssp             HHHHCCSSCEEEETCTT---------------STTHHHHT-------CCEEEESCHHHHHHHHHT--------TCEEEEC
T ss_pred             HHhhCCCCeEEEECCCC---------------cccccccc-------eEEEEeCChhhccccccc--------ccccccc
Confidence            33445556899999999               97665542       468999999999998863        4889999


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      |+.+...      ..++||+|+....   .++...+++.+.+.|+|||.+++.....
T Consensus        81 d~~~l~~------~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_          81 TAENLPL------KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             BTTBCCS------CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccccccc------ccccccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence            9976521      2579999987643   3457889999999999999999987643

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=4.6e-10  Score=101.14  Aligned_cols=119  Identities=19%  Similarity=0.358  Sum_probs=91.3

Q ss_pred             CCHHHHHHHHHHHh---hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          103 VSPDQAQLLAMLVQ---ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       103 v~~~~~~lL~~l~~---~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      -.|++..++.....   ..+..+++|+|||+               |..++.++.. + +++|+++|+|++.++.|++|+
T Consensus        91 PRpeTE~lv~~~~~~~~~~~~~~vld~g~Gs---------------G~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na  153 (271)
T d1nv8a_          91 PRPETEELVELALELIRKYGIKTVADIGTGS---------------GAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNA  153 (271)
T ss_dssp             CCTTHHHHHHHHHHHHHHHTCCEEEEESCTT---------------SHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhccccccEEEEeeeee---------------ehhhhhhhhc-c-cceeeechhhhhHHHHHHHHH
Confidence            35666666655543   35567999999999               8888888764 4 789999999999999999999


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC--c---------------------cchHHHHHHHHhcccC
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--K---------------------RMYQEYFELLLQLIRV  236 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~--~---------------------~~~~~~~~~~~~lLkp  236 (294)
                      +++|+.+++.+..++..+.....     .++||+|+.+++  +                     ....-+-+.+.++|+|
T Consensus       154 ~~~~~~~~~~i~~~~~~~~~~~~-----~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~  228 (271)
T d1nv8a_         154 ERHGVSDRFFVRKGEFLEPFKEK-----FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTS  228 (271)
T ss_dssp             HHTTCTTSEEEEESSTTGGGGGG-----TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCT
T ss_pred             HHcCCCceeEEeecccccccccc-----cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCC
Confidence            99999999999999988765433     479999999866  0                     0012222334578999


Q ss_pred             CeEEEEe
Q 022597          237 GGIIVID  243 (294)
Q Consensus       237 gG~ivid  243 (294)
                      ||++++.
T Consensus       229 ~G~l~~E  235 (271)
T d1nv8a_         229 GKIVLME  235 (271)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEE
Confidence            9998875

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.1e-10  Score=105.90  Aligned_cols=106  Identities=13%  Similarity=0.125  Sum_probs=82.8

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++|||||||+               |..++.+|++.  ..+|+++|.++.+. .+++..+.++..+++++++++.
T Consensus        32 ~~~~~~~VLDiGcG~---------------G~lsl~aa~~G--a~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~   93 (311)
T d2fyta1          32 HIFKDKVVLDVGCGT---------------GILSMFAAKAG--AKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKI   93 (311)
T ss_dssp             GGTTTCEEEEETCTT---------------SHHHHHHHHTT--CSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCT
T ss_pred             ccCCcCEEEEECCCC---------------CHHHHHHHHcC--CCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeH
Confidence            345678999999999               99999888863  36899999999865 5777888899999999999999


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+...      +.++||+|+....      ......++....++|+|||.++.+.+
T Consensus        94 ~~l~~------~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~  143 (311)
T d2fyta1          94 EEVHL------PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDIC  143 (311)
T ss_dssp             TTSCC------SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             HHhcC------ccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecccc
Confidence            77521      2479999987532      23355667667789999999985443

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.10  E-value=1.8e-10  Score=104.97  Aligned_cols=105  Identities=14%  Similarity=0.306  Sum_probs=84.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC---CCCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g---l~~~v~~~~gd  194 (294)
                      ..+++||-||.|.               |.....+++. ++..+|++||+|++.++.|++++....   -++|++++.+|
T Consensus        88 ~~pk~VLiiGgG~---------------G~~~r~~l~~-~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~D  151 (295)
T d1inla_          88 PNPKKVLIIGGGD---------------GGTLREVLKH-DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIAN  151 (295)
T ss_dssp             SSCCEEEEEECTT---------------CHHHHHHTTS-TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred             CCCceEEEecCCc---------------hHHHHHHHhc-CCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhh
Confidence            4678999999999               8777776664 346799999999999999999886532   24689999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCcc--------chHHHHHHHHhcccCCeEEEEe
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~--------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.+.++..     .++||+|++|...+        ...++++.+.+.|+|||++++.
T Consensus       152 a~~~l~~~-----~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         152 GAEYVRKF-----KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             HHHHGGGC-----SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHhcC-----CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence            99887653     57899999996421        1478999999999999999875

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.10  E-value=1.4e-10  Score=106.38  Aligned_cols=105  Identities=20%  Similarity=0.248  Sum_probs=86.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh--C--CCCcEEEEEc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--G--VSHKVKIKHG  193 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~--g--l~~~v~~~~g  193 (294)
                      ..+++||.||.|.               |..+..+++. ++..+|++||++++.++.|++++...  +  -.++++++.+
T Consensus        76 ~~pk~VLiiG~G~---------------G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~  139 (312)
T d1uira_          76 PEPKRVLIVGGGE---------------GATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID  139 (312)
T ss_dssp             SCCCEEEEEECTT---------------SHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred             CCcceEEEeCCCc---------------hHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEc
Confidence            4678999999999               8887777764 44689999999999999999998642  2  2468999999


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCc----------cchHHHHHHHHhcccCCeEEEEe
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEK----------RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~----------~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      |+.+.++..     .++||+||+|...          -...++|+.+.+.|+|||++++.
T Consensus       140 Da~~~l~~~-----~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         140 DARAYLERT-----EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             CHHHHHHHC-----CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             hHHHHhhhc-----CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence            999998764     5789999998631          01368999999999999999874

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.3e-10  Score=102.74  Aligned_cols=105  Identities=18%  Similarity=0.340  Sum_probs=84.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh---CCCCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GVSHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~---gl~~~v~~~~gd  194 (294)
                      ..+++||-||.|.               |..+..+.+. ++..+++.||++++.++.|++++...   --..|++++.+|
T Consensus        77 ~~pk~vLiiGgG~---------------G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~D  140 (285)
T d2o07a1          77 PNPRKVLIIGGGD---------------GGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGD  140 (285)
T ss_dssp             SSCCEEEEEECTT---------------SHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred             cCcCeEEEeCCCc---------------hHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEcc
Confidence            4678999999999               8777777654 34679999999999999999998642   124799999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +...++..     .++||+|++|...+       ...++|+.+.+.|+|||++++.
T Consensus       141 a~~~l~~~-----~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         141 GFEFMKQN-----QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             HHHHHHTC-----SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHhcC-----CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence            99988753     57899999996521       1358999999999999999876

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.03  E-value=1e-09  Score=98.87  Aligned_cols=104  Identities=17%  Similarity=0.254  Sum_probs=84.2

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh---------CCCCc
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---------GVSHK  187 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~---------gl~~~  187 (294)
                      ..++++||.||.|.               |..+..+++ .+ ..+|+.||+|++.++.|++++...         .-.+|
T Consensus        70 ~~~p~~vLiiG~G~---------------G~~~~~~l~-~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~r  132 (276)
T d1mjfa_          70 HPKPKRVLVIGGGD---------------GGTVREVLQ-HD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEK  132 (276)
T ss_dssp             SSCCCEEEEEECTT---------------SHHHHHHTT-SC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSS
T ss_pred             CCCCceEEEecCCc---------------hHHHHHHHH-hC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCC
Confidence            35678999999999               877776665 34 468999999999999999987432         23579


Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ++++.+|+.+.++.      .++||+|++|...+       .-.++++.+.+.|+|||++++.
T Consensus       133 v~i~~~Da~~~l~~------~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         133 AKLTIGDGFEFIKN------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             EEEEESCHHHHHHH------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEChHHHHHhc------cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            99999999988864      47899999996522       1368999999999999999864

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.01  E-value=1.3e-09  Score=93.29  Aligned_cols=110  Identities=17%  Similarity=0.137  Sum_probs=88.4

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++..+||++||+               |.-+..++...| +++|+++|.++++++.|+++++..+  +++++++++.
T Consensus        20 ~~~~~~~~lD~t~G~---------------Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f   81 (192)
T d1m6ya2          20 KPEDEKIILDCTVGE---------------GGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSY   81 (192)
T ss_dssp             CCCTTCEEEETTCTT---------------SHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCG
T ss_pred             CCCCCCEEEEecCCC---------------cHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHH
Confidence            445677999999999               999999999986 7999999999999999999998754  6799999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCcc------------chHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~------------~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+.-..+.. ...++||.|+.|.+..            ...+.++.+...|+|||.+++=+
T Consensus        82 ~~~~~~~~~-~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          82 READFLLKT-LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             GGHHHHHHH-TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             hhHHHHHHH-cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence            765333322 2257999999997642            24567777889999999998733

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.98  E-value=1.2e-09  Score=98.34  Aligned_cols=105  Identities=17%  Similarity=0.252  Sum_probs=86.4

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh-C--CCCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-G--VSHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~-g--l~~~v~~~~gd  194 (294)
                      .++++||-||.|.               |..+..+++. ++..+|+.||+|++.++.|++++... +  -+.|++++.+|
T Consensus        74 ~~p~~vLiiGgG~---------------G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D  137 (274)
T d1iy9a_          74 PNPEHVLVVGGGD---------------GGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD  137 (274)
T ss_dssp             SSCCEEEEESCTT---------------CHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC
T ss_pred             CCcceEEecCCCC---------------cHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEech
Confidence            4678999999999               8887777764 33679999999999999999998642 2  24689999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +...++..     ..+||+|++|...+       .-.++++.+.+.|+|||+++..
T Consensus       138 ~~~~l~~~-----~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         138 GFMHIAKS-----ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             SHHHHHTC-----CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHhhc-----CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence            99988753     57899999996522       2578999999999999999865

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=8.6e-11  Score=102.08  Aligned_cols=113  Identities=13%  Similarity=0.071  Sum_probs=74.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH------  192 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~------  192 (294)
                      ++++|||||||+               |..++.++..  ...+|+|+|+++.+++.|+++++..+..-......      
T Consensus        51 ~g~~vLDlGcG~---------------G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~  113 (257)
T d2a14a1          51 QGDTLIDIGSGP---------------TIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL  113 (257)
T ss_dssp             CEEEEEESSCTT---------------CCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred             CCCEEEEECCCC---------------CHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHh
Confidence            356899999999               8766655543  13479999999999999999998755431110000      


Q ss_pred             -cchhh--h-HH-----------------HHhhcCCCCceeEEEEcCC-------ccchHHHHHHHHhcccCCeEEEEec
Q 022597          193 -GLAAD--S-LK-----------------ALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       193 -gda~~--~-l~-----------------~l~~~~~~~~fD~vfiD~~-------~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                       +....  . ..                 ........++||+|+...-       ..++..+++.+.++|||||.+++.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~  193 (257)
T d2a14a1         114 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV  193 (257)
T ss_dssp             TTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             ccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEE
Confidence             00000  0 00                 0001123578999986422       3467889999999999999999988


Q ss_pred             ccCC
Q 022597          245 VLWH  248 (294)
Q Consensus       245 vl~~  248 (294)
                      +...
T Consensus       194 ~~~~  197 (257)
T d2a14a1         194 TLRL  197 (257)
T ss_dssp             ESSC
T ss_pred             eccc
Confidence            7643

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.97  E-value=1.5e-09  Score=99.47  Aligned_cols=105  Identities=22%  Similarity=0.301  Sum_probs=83.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC---CCCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g---l~~~v~~~~gd  194 (294)
                      ..+++||-||.|.               |..+..+++. ++-.+|+.||+|++.++.+++++....   -.+|++++.+|
T Consensus       105 ~~pk~VLIiGgG~---------------G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~D  168 (312)
T d2b2ca1         105 PDPKRVLIIGGGD---------------GGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGD  168 (312)
T ss_dssp             SSCCEEEEESCTT---------------SHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSC
T ss_pred             CCCCeEEEeCCCc---------------hHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEch
Confidence            4678999999999               8777777664 335799999999999999999986432   13689999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEe
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +.+.++..     ..+||+|++|...+       .-.++|+.+.+.|+|||+++..
T Consensus       169 a~~~l~~~-----~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         169 GFEFLKNH-----KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             HHHHHHHC-----TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHhC-----CCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence            99988764     57899999997522       2478999999999999999976

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.96  E-value=2.4e-09  Score=91.78  Aligned_cols=92  Identities=18%  Similarity=0.191  Sum_probs=73.1

Q ss_pred             CCCCCHHHHHHHHHHHhh---hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQI---LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK  176 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~---~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~  176 (294)
                      +...++..+.-+..++..   ..+++|||+|||+               |..++.++.. + ..+|+++|+|+++++.|+
T Consensus        24 qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~Gt---------------G~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~   86 (201)
T d1wy7a1          24 QYRTPGNAASELLWLAYSLGDIEGKVVADLGAGT---------------GVLSYGALLL-G-AKEVICVEVDKEAVDVLI   86 (201)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTT---------------CHHHHHHHHT-T-CSEEEEEESCHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcc---------------hHHHHHHHHc-C-CCEEEEEcCcHHHHHHHH
Confidence            345666766666555544   3568999999999               9888876653 2 469999999999999999


Q ss_pred             HHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          177 KYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       177 ~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      ++++..+.  +.+++.+|+.+.         .++||+||.|++
T Consensus        87 ~N~~~~~~--~~~~~~~d~~~~---------~~~fD~Vi~nPP  118 (201)
T d1wy7a1          87 ENLGEFKG--KFKVFIGDVSEF---------NSRVDIVIMNPP  118 (201)
T ss_dssp             HHTGGGTT--SEEEEESCGGGC---------CCCCSEEEECCC
T ss_pred             HHHHHcCC--CceEEECchhhh---------CCcCcEEEEcCc
Confidence            99998776  478999998664         578999999987

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.93  E-value=2.4e-09  Score=92.10  Aligned_cols=88  Identities=17%  Similarity=0.209  Sum_probs=69.7

Q ss_pred             CCCCCHHHHHHHHHHHhhh---CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQIL---GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAK  176 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~---~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~  176 (294)
                      |+..+++.+.-+.+.+...   .+++|||+|||+               |..++.++..-  ..+|+++|+|+++++.|+
T Consensus        26 Qy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGt---------------G~l~i~a~~~g--a~~V~~vDid~~a~~~ar   88 (197)
T d1ne2a_          26 QYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGN---------------GILACGSYLLG--AESVTAFDIDPDAIETAK   88 (197)
T ss_dssp             -CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTT---------------CHHHHHHHHTT--BSEEEEEESCHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCC---------------cHHHHHHHHcC--CCcccccccCHHHHHHHH
Confidence            4566777776666666554   578999999999               98887766642  368999999999999999


Q ss_pred             HHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          177 KYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       177 ~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      ++++      +++++.+|..+.         .++||.|+.+++
T Consensus        89 ~N~~------~~~~~~~D~~~l---------~~~fD~Vi~NPP  116 (197)
T d1ne2a_          89 RNCG------GVNFMVADVSEI---------SGKYDTWIMNPP  116 (197)
T ss_dssp             HHCT------TSEEEECCGGGC---------CCCEEEEEECCC
T ss_pred             Hccc------cccEEEEehhhc---------CCcceEEEeCcc
Confidence            8863      578999998764         688999999987

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.5e-09  Score=96.20  Aligned_cols=84  Identities=20%  Similarity=0.230  Sum_probs=69.8

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      ..++||+|||+               |..++.++...+ +.+++++|+++++++.|+++++.+++.+++.+++.+..+.+
T Consensus        62 ~~~~LDiGtGs---------------g~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~  125 (250)
T d2h00a1          62 LRRGIDIGTGA---------------SCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL  125 (250)
T ss_dssp             CCEEEEESCTT---------------TTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred             cceEEEeCCCc---------------hHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhh
Confidence            35899999999               999999999886 79999999999999999999999999999999998765543


Q ss_pred             HHHhhcCCCCceeEEEEcCC
Q 022597          200 KALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~  219 (294)
                      .........++||+|+.+++
T Consensus       126 ~~~~~~~~~~~fD~ivsNPP  145 (250)
T d2h00a1         126 MDALKEESEIIYDFCMCNPP  145 (250)
T ss_dssp             TTTSTTCCSCCBSEEEECCC
T ss_pred             hhhhhhcccCceeEEEecCc
Confidence            22222222568999998876

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=5.7e-09  Score=98.80  Aligned_cols=123  Identities=18%  Similarity=0.186  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +.+....-+...+.+.+++++||||||+               |..++.+|...+ .++++|||+++.+++.|+++.++.
T Consensus       200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~---------------G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~  263 (406)
T d1u2za_         200 LLPNFLSDVYQQCQLKKGDTFMDLGSGV---------------GNCVVQAALECG-CALSFGCEIMDDASDLTILQYEEL  263 (406)
T ss_dssp             BCHHHHHHHHHHTTCCTTCEEEEESCTT---------------SHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEeCCCCC---------------cHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHH
Confidence            3555444444445677888999999999               999999999876 458999999999999999998864


Q ss_pred             CC-------C-CcEEE-EEcchhhh--HHHHhhcCCCCceeEEEEcCC--ccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          183 GV-------S-HKVKI-KHGLAADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       183 gl-------~-~~v~~-~~gda~~~--l~~l~~~~~~~~fD~vfiD~~--~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      +.       . ..+.+ ..++..+.  ....     -..+|+|+++..  .+.....+..+.+.|||||.||..+.+
T Consensus       264 ~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~-----~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~  335 (406)
T d1u2za_         264 KKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL-----IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSL  335 (406)
T ss_dssp             HHHHHHTTBCCCCEEEEESSCSTTCHHHHHH-----GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             hhhhhhhccccccceeeeeechhhccccccc-----cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEeccc
Confidence            31       1 12333 23444322  2222     256899998743  456788899999999999999886654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.88  E-value=2.6e-09  Score=96.86  Aligned_cols=107  Identities=20%  Similarity=0.320  Sum_probs=86.0

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh---CCCCcEEEEEcc
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GVSHKVKIKHGL  194 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~---gl~~~v~~~~gd  194 (294)
                      .++++||-||.|.               |.....+++. ++..+++.||+|++.++.+++++...   --.++++++.+|
T Consensus        79 ~~pk~VLiiGgG~---------------G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~D  142 (290)
T d1xj5a_          79 PNPKKVLVIGGGD---------------GGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGD  142 (290)
T ss_dssp             SCCCEEEEETCSS---------------SHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESC
T ss_pred             CCCcceEEecCCc---------------hHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEcc
Confidence            3678999999998               8777776664 33579999999999999999988643   235789999999


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCcc-------chHHHHHHHHhcccCCeEEEEec
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~-------~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +.+.+...    ..++||+|++|...+       .-.++|+.+.+.|+|||++++.-
T Consensus       143 a~~~l~~~----~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         143 GVAFLKNA----AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             HHHHHHTS----CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHhhc----cccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            99988653    145899999997522       14789999999999999999763

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=2.9e-08  Score=90.93  Aligned_cols=122  Identities=14%  Similarity=0.174  Sum_probs=95.1

Q ss_pred             CCCCCCHHHHHHHHHHHh----hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHH
Q 022597           99 SQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEV  174 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~~----~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~  174 (294)
                      +..|+.+.+.+.|...+.    ..+..+|||+.||+               |..|+.++..   ..+|+++|.+++.++.
T Consensus       188 sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~---------------G~fsl~La~~---~~~V~gvE~~~~ai~~  249 (358)
T d1uwva2         188 DFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGM---------------GNFTLPLATQ---AASVVGVEGVPALVEK  249 (358)
T ss_dssp             SCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTT---------------TTTHHHHHTT---SSEEEEEESCHHHHHH
T ss_pred             hhhccchhhhhHHHHHHHHhhccCCCceEEEecccc---------------cccchhcccc---ccEEEeccCcHHHHHH
Confidence            467888888776666543    33567999999999               9999999875   4699999999999999


Q ss_pred             HHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       175 A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      |+++.+.+|+. +++++.++..+.+......  ..++|+|++|++.....+.++.+.+. +|.-++.+
T Consensus       250 A~~na~~n~i~-n~~~~~~~~~~~~~~~~~~--~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~ivYV  313 (358)
T d1uwva2         250 GQQNARLNGLQ-NVTFYHENLEEDVTKQPWA--KNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYV  313 (358)
T ss_dssp             HHHHHHHTTCC-SEEEEECCTTSCCSSSGGG--TTCCSEEEECCCTTCCHHHHHHHHHH-CCSEEEEE
T ss_pred             HHHhHHhcccc-cceeeecchhhhhhhhhhh--hccCceEEeCCCCccHHHHHHHHHHc-CCCEEEEE
Confidence            99999999997 5999999988765432211  46799999999976666777776653 56656554

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=9.2e-08  Score=85.95  Aligned_cols=124  Identities=16%  Similarity=0.177  Sum_probs=96.1

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ..++....++...++...++.+|||++++.               |.=|..++.... +++|+++|+++..++..+++++
T Consensus        84 ~~vQD~sS~l~~~~L~~~~g~~vLD~CAaP---------------GgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~  147 (284)
T d1sqga2          84 VTVQDASAQGCMTWLAPQNGEHILDLCAAP---------------GGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLK  147 (284)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTT---------------CHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHH
T ss_pred             EEeccccccccccccCccccceeEeccCcc---------------ccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhh
Confidence            346666677777788888889999999999               999999988665 6899999999999999999999


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc-------------------------chHHHHHHHHhccc
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIR  235 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~-------------------------~~~~~~~~~~~lLk  235 (294)
                      +.|+.. +.+...+... ....    ..+.||.|++|++-.                         -..++++.+.++|+
T Consensus       148 r~g~~~-~~~~~~~~~~-~~~~----~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk  221 (284)
T d1sqga2         148 RLGMKA-TVKQGDGRYP-SQWC----GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK  221 (284)
T ss_dssp             HTTCCC-EEEECCTTCT-HHHH----TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE
T ss_pred             cccccc-eeeecccccc-chhc----ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcC
Confidence            999874 4444444322 2222    146899999998710                         13467777889999


Q ss_pred             CCeEEEEeccc
Q 022597          236 VGGIIVIDNVL  246 (294)
Q Consensus       236 pgG~ivid~vl  246 (294)
                      |||.||....-
T Consensus       222 ~gG~lvYsTCS  232 (284)
T d1sqga2         222 TGGTLVYATCS  232 (284)
T ss_dssp             EEEEEEEEESC
T ss_pred             CCceEEEeeec
Confidence            99999988774

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.3e-09  Score=94.91  Aligned_cols=113  Identities=10%  Similarity=0.021  Sum_probs=71.8

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcE----------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV----------  188 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v----------  188 (294)
                      ++.++||+|||+               |..++..+..  ...+|+++|.++.+++.++++++..+..-..          
T Consensus        54 ~g~~vLDiGcG~---------------g~~~~~~~~~--~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~  116 (263)
T d2g72a1          54 SGRTLIDIGSGP---------------TVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLI  116 (263)
T ss_dssp             CCSEEEEETCTT---------------CCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH
T ss_pred             CCcEEEEeccCC---------------CHHHHHHhcc--cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhh
Confidence            567999999999               8655433332  2358999999999999999988654321100          


Q ss_pred             -------------------EEEEcchhhhHHHHhhcCCCCceeEEEEcC-------CccchHHHHHHHHhcccCCeEEEE
Q 022597          189 -------------------KIKHGLAADSLKALILNGEASSYDFAFVDA-------EKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       189 -------------------~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-------~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                                         .+...|....-.........++||+|+.-.       ..+.+...++.+.++|||||++++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~  196 (263)
T d2g72a1         117 EGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLL  196 (263)
T ss_dssp             HCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEE
Confidence                               111111111000000011245799997632       234688899999999999999999


Q ss_pred             ecccCC
Q 022597          243 DNVLWH  248 (294)
Q Consensus       243 d~vl~~  248 (294)
                      -+++..
T Consensus       197 ~~~~~~  202 (263)
T d2g72a1         197 IGALEE  202 (263)
T ss_dssp             EEEESC
T ss_pred             ecccCC
Confidence            777543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=3.7e-08  Score=85.10  Aligned_cols=102  Identities=12%  Similarity=0.170  Sum_probs=88.1

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++++|+|||.               |..|+-+|...| +.+++.+|.+..-+...++..+..|+. +++++++.+
T Consensus        62 ~~~~~~~ilDiGsGa---------------G~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~  124 (207)
T d1jsxa_          62 PYLQGERFIDVGTGP---------------GLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRV  124 (207)
T ss_dssp             GGCCSSEEEEETCTT---------------TTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCT
T ss_pred             hhhcCCceeeeeccC---------------Cceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccch
Confidence            445678999999999               999999999876 799999999999999999999999996 599999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+...       ..+||+|..-+- .....+++.+.+++++||.+++
T Consensus       125 E~~~~-------~~~fD~V~sRA~-~~~~~ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         125 EEFPS-------EPPFDGVISRAF-ASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             TTSCC-------CSCEEEEECSCS-SSHHHHHHHHTTSEEEEEEEEE
T ss_pred             hhhcc-------ccccceehhhhh-cCHHHHHHHHHHhcCCCcEEEE
Confidence            76421       468999987764 4577899999999999999875

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.65  E-value=9.3e-08  Score=87.15  Aligned_cols=124  Identities=17%  Similarity=0.242  Sum_probs=100.7

Q ss_pred             CCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       101 ~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      ..+.....++...++...++.+|||+++|.               |.=+..++..+...+.++++|.++..++..+++++
T Consensus        98 ~~vQD~aS~l~~~~l~~~~g~~vlD~CAap---------------GgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~  162 (313)
T d1ixka_          98 IYIQEASSMYPPVALDPKPGEIVADMAAAP---------------GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLS  162 (313)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSC---------------SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH
T ss_pred             EEEecccccchhhcccCCccceeeecccch---------------hhhhHhhhhhcccccceeeeccCHHHHHHHHHHHH
Confidence            355566677777777888889999999999               99999999988878999999999999999999999


Q ss_pred             HhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-------------------------cchHHHHHHHHhccc
Q 022597          181 RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-------------------------RMYQEYFELLLQLIR  235 (294)
Q Consensus       181 ~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-------------------------~~~~~~~~~~~~lLk  235 (294)
                      +.|..+ +.+...|.... +..     ...||.|++|++-                         ....+++..+.++|+
T Consensus       163 r~~~~~-i~~~~~d~~~~-~~~-----~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk  235 (313)
T d1ixka_         163 RLGVLN-VILFHSSSLHI-GEL-----NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK  235 (313)
T ss_dssp             HHTCCS-EEEESSCGGGG-GGG-----CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHHhhc-ccccccccccc-ccc-----cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeC
Confidence            999964 77777777653 222     5789999999761                         013466777789999


Q ss_pred             CCeEEEEeccc
Q 022597          236 VGGIIVIDNVL  246 (294)
Q Consensus       236 pgG~ivid~vl  246 (294)
                      |||.+|....-
T Consensus       236 ~gG~lVYsTCS  246 (313)
T d1ixka_         236 PGGILVYSTCS  246 (313)
T ss_dssp             EEEEEEEEESC
T ss_pred             CCcEEEEeecc
Confidence            99999988773

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.63  E-value=1.9e-07  Score=87.20  Aligned_cols=107  Identities=17%  Similarity=0.175  Sum_probs=90.2

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCC---------
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH---------  186 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~---------  186 (294)
                      +..++.+|||..||+               |.-++..+...+ ..+|++.|+|++.++.+++|++.+++.+         
T Consensus        42 ~~~~~~~vLD~~sas---------------G~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~  105 (375)
T d2dula1          42 NILNPKIVLDALSAT---------------GIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAI  105 (375)
T ss_dssp             HHHCCSEEEESSCTT---------------SHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEE
T ss_pred             HHhCCCEEEEcCCCc---------------cHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCcccccccccccc
Confidence            445788999999999               999998888775 5689999999999999999999998753         


Q ss_pred             -----cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          187 -----KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       187 -----~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                           .+.+.+.|+...+...     ...||+|.+|+. .....|++.+.+.++.||++.+..
T Consensus       106 ~~~~~~~~~~~~Da~~~~~~~-----~~~fDvIDiDPf-Gs~~pfldsAi~a~~~~Gll~vTa  162 (375)
T d2dula1         106 LKGEKTIVINHDDANRLMAER-----HRYFHFIDLDPF-GSPMEFLDTALRSAKRRGILGVTA  162 (375)
T ss_dssp             EESSSEEEEEESCHHHHHHHS-----TTCEEEEEECCS-SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccceeEeehhhhhhhhHhh-----cCcCCcccCCCC-CCcHHHHHHHHHHhccCCEEEEEe
Confidence                 5788888987766543     578999999985 334679999999999999999854

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2.6e-07  Score=83.21  Aligned_cols=98  Identities=19%  Similarity=0.207  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +.....++...++...++.+|||+++|.               |.-|..++..+...++|+++|+++..++.+++++++.
T Consensus        78 ~QD~sS~l~~~~L~~~~g~~vLD~cAap---------------GgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~  142 (293)
T d2b9ea1          78 LQDRASCLPAMLLDPPPGSHVIDACAAP---------------GNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA  142 (293)
T ss_dssp             ECCTGGGHHHHHHCCCTTCEEEESSCTT---------------CHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             EcCCcccccccccCCCccceEEecccch---------------hhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc
Confidence            3333445555666677788999999999               9999999988877899999999999999999999999


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      |+. ++.+...|....-+...   ..++||.|++|++
T Consensus       143 g~~-~~~~~~~d~~~~~~~~~---~~~~fD~VL~DaP  175 (293)
T d2b9ea1         143 GVS-CCELAEEDFLAVSPSDP---RYHEVHYILLDPS  175 (293)
T ss_dssp             TCC-SEEEEECCGGGSCTTCG---GGTTEEEEEECCC
T ss_pred             Ccc-ceeeeehhhhhhccccc---ccceeeEEeecCc
Confidence            987 49999988865422110   1367999999976

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.42  E-value=1.2e-06  Score=76.81  Aligned_cols=96  Identities=16%  Similarity=0.154  Sum_probs=75.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+.++|+|||+|+               |..+..++++.| +.+++..|+. +.       ++.++..++++++.+|..+
T Consensus        79 ~~~~~vvDvGGG~---------------G~~~~~l~~~~P-~l~~~v~Dlp-~v-------i~~~~~~~rv~~~~gD~f~  134 (244)
T d1fp2a2          79 DGLESIVDVGGGT---------------GTTAKIICETFP-KLKCIVFDRP-QV-------VENLSGSNNLTYVGGDMFT  134 (244)
T ss_dssp             TTCSEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEECH-HH-------HTTCCCBTTEEEEECCTTT
T ss_pred             cCceEEEEecCCc---------------cHHHHHHHHhCC-CCeEEEecCH-HH-------HHhCcccCceEEEecCccc
Confidence            4567999999999               999999999998 7899999983 32       4566778999999999875


Q ss_pred             hHHHHhhcCCCCceeEEEEc-----CCccchHHHHHHHHhcccCC---eEEEEeccc
Q 022597          198 SLKALILNGEASSYDFAFVD-----AEKRMYQEYFELLLQLIRVG---GIIVIDNVL  246 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD-----~~~~~~~~~~~~~~~lLkpg---G~ivid~vl  246 (294)
                      .         ...+|++++-     -+.+...++++.+.+.|+||   |.+++.+..
T Consensus       135 ~---------~p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~  182 (244)
T d1fp2a2         135 S---------IPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  182 (244)
T ss_dssp             C---------CCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             C---------CCCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence            3         2457998763     33455678999999999998   656555443

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.41  E-value=7.2e-07  Score=78.46  Aligned_cols=103  Identities=20%  Similarity=0.252  Sum_probs=86.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      .+.+++|||+|.               |.-|+-++...| +.+++.+|.+..-+...+...++.|+. +++++++.+.+.
T Consensus        70 ~~~~ilDiGSGa---------------GfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~  132 (239)
T d1xdza_          70 QVNTICDVGAGA---------------GFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETF  132 (239)
T ss_dssp             GCCEEEEECSSS---------------CTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHH
T ss_pred             CCCeEEeecCCC---------------chHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhc
Confidence            467999999999               999999999887 789999999999999999999999997 589999888654


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      ...-   ...++||+|+.-+- .....+++.+.+++++||.+++
T Consensus       133 ~~~~---~~~~~~D~v~sRAv-a~l~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         133 GQRK---DVRESYDIVTARAV-ARLSVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             TTCT---TTTTCEEEEEEECC-SCHHHHHHHHGGGEEEEEEEEE
T ss_pred             cccc---cccccceEEEEhhh-hCHHHHHHHHhhhcccCCEEEE
Confidence            2110   01368999998764 3567899999999999999974

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.38  E-value=7.6e-07  Score=74.83  Aligned_cols=108  Identities=16%  Similarity=0.210  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      .++..+++|..++...++.+|||.|||+               |.....+....+....++++|+++....         
T Consensus         3 TP~~i~~~m~~l~~~~~~~~IlDp~~G~---------------G~fl~~~~~~~~~~~~i~g~ei~~~~~~---------   58 (223)
T d2ih2a1           3 TPPEVVDFMVSLAEAPRGGRVLEPACAH---------------GPFLRAFREAHGTAYRFVGVEIDPKALD---------   58 (223)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTT---------------CHHHHHHHHHHCSCSEEEEEESCTTTCC---------
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEECCCch---------------HHHHHHHHHhccccceEEeeecCHHHHh---------
Confidence            3566788888888888889999999999               9888888877777789999999997542         


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc--------------------------------chHHHHHHH
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR--------------------------------MYQEYFELL  230 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~--------------------------------~~~~~~~~~  230 (294)
                       +..+..++++|.....       ...+||+++.+++..                                .|..+++.+
T Consensus        59 -~~~~~~~~~~~~~~~~-------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~a  130 (223)
T d2ih2a1          59 -LPPWAEGILADFLLWE-------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKA  130 (223)
T ss_dssp             -CCTTEEEEESCGGGCC-------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHH
T ss_pred             -hcccceeeeeehhccc-------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHH
Confidence             3445788888876542       157899999876510                                145677888


Q ss_pred             HhcccCCeEEEE
Q 022597          231 LQLIRVGGIIVI  242 (294)
Q Consensus       231 ~~lLkpgG~ivi  242 (294)
                      .++|++||.+++
T Consensus       131 l~~lk~~G~~~~  142 (223)
T d2ih2a1         131 VRLLKPGGVLVF  142 (223)
T ss_dssp             HHHEEEEEEEEE
T ss_pred             HHhcccCCceEE
Confidence            999999999754

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.32  E-value=8.2e-07  Score=80.08  Aligned_cols=116  Identities=11%  Similarity=0.044  Sum_probs=85.5

Q ss_pred             CCHHHHHHHHHHHh----hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC----CCcEEEEEeCChHHHHH
Q 022597          103 VSPDQAQLLAMLVQ----ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP----ESGCLVACERDARSLEV  174 (294)
Q Consensus       103 v~~~~~~lL~~l~~----~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~----~~~~v~~id~~~~~~~~  174 (294)
                      .++..+.+|..++.    ...+.+|+|.|||+               |...+.+...+.    ...+++|+|+++.+++.
T Consensus        97 TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~Gs---------------G~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~  161 (328)
T d2f8la1          97 TPDSIGFIVAYLLEKVIQKKKNVSILDPACGT---------------ANLLTTVINQLELKGDVDVHASGVDVDDLLISL  161 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTT---------------SHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCc---------------chhHHHHHHHHHhccCccceEEEecccHHHHHH
Confidence            35556666666553    33456899999999               888877765442    24589999999999999


Q ss_pred             HHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc---------------------chHHHHHHHHhc
Q 022597          175 AKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR---------------------MYQEYFELLLQL  233 (294)
Q Consensus       175 A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~---------------------~~~~~~~~~~~l  233 (294)
                      |+.++...+..  ..+.++|.....       ...+||+|+.+++-.                     .+.-+++.+.++
T Consensus       162 a~~~~~~~~~~--~~~~~~d~~~~~-------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~  232 (328)
T d2f8la1         162 ALVGADLQRQK--MTLLHQDGLANL-------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY  232 (328)
T ss_dssp             HHHHHHHHTCC--CEEEESCTTSCC-------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhh--hhhhcccccccc-------ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHh
Confidence            99999887764  567788765431       257899999998721                     144578999999


Q ss_pred             ccCCeEEEE
Q 022597          234 IRVGGIIVI  242 (294)
Q Consensus       234 LkpgG~ivi  242 (294)
                      |+|||.+++
T Consensus       233 Lk~~G~~~~  241 (328)
T d2f8la1         233 TKPGGYLFF  241 (328)
T ss_dssp             EEEEEEEEE
T ss_pred             cCCCCceEE
Confidence            999997543

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.31  E-value=1.2e-06  Score=76.95  Aligned_cols=97  Identities=15%  Similarity=0.099  Sum_probs=77.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .+.++|||||||+               |..+..++++.| +.+++..|+. +.       ++..+..++++++.+|..+
T Consensus        80 ~~~~~vlDiGGG~---------------G~~~~~l~~~~P-~l~~~v~Dlp-~v-------i~~~~~~~ri~~~~gd~~~  135 (244)
T d1fp1d2          80 EGISTLVDVGGGS---------------GRNLELIISKYP-LIKGINFDLP-QV-------IENAPPLSGIEHVGGDMFA  135 (244)
T ss_dssp             TTCSEEEEETCTT---------------SHHHHHHHHHCT-TCEEEEEECH-HH-------HTTCCCCTTEEEEECCTTT
T ss_pred             cCCcEEEEecCCC---------------cHHHHHHHHHCC-CCeEEEecch-hh-------hhccCCCCCeEEecCCccc
Confidence            4567999999999               999999999997 7899999983 32       4566777899999999875


Q ss_pred             hHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccCCeEEEEecccC
Q 022597          198 SLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLW  247 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkpgG~ivid~vl~  247 (294)
                      .         ....|++++-.     +.+.-..+++.+.+.|+|||.+++.+.+.
T Consensus       136 ~---------~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~  181 (244)
T d1fp1d2         136 S---------VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL  181 (244)
T ss_dssp             C---------CCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             c---------cccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence            3         23569987642     34556788999999999999888877654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.20  E-value=8e-06  Score=68.61  Aligned_cols=105  Identities=14%  Similarity=0.156  Sum_probs=79.9

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++..++|..+|.               |.-+..++..   +++|+|+|.++++++.|++.     ...++++++++.
T Consensus        15 ~~~~g~~~vD~T~G~---------------GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f   71 (182)
T d1wg8a2          15 AVRPGGVYVDATLGG---------------AGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNF   71 (182)
T ss_dssp             TCCTTCEEEETTCTT---------------SHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCG
T ss_pred             CCCCCCEEEEeCCCC---------------cHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHH
Confidence            445677999999999               7667777663   68999999999999888763     346899999998


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccc------------hHHHHHHHHhcccCCeEEEEec
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRM------------YQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~------------~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+.-..+...+ .+++|.|+.|.+...            ....++.....|++||.+++-.
T Consensus        72 ~~~~~~l~~~~-~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~  131 (182)
T d1wg8a2          72 RHLKRHLAALG-VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA  131 (182)
T ss_dssp             GGHHHHHHHTT-CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHHHcC-CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence            77544443322 578999999987322            3446777788999999998754

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.14  E-value=4.1e-06  Score=73.03  Aligned_cols=101  Identities=9%  Similarity=0.065  Sum_probs=70.6

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +++...+-+...+.+.++.+|||||||+               |..|..++..   +.+|++||+|++.++.+++.+.. 
T Consensus         5 ~d~~i~~~iv~~~~~~~~d~VlEIGpG~---------------G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~-   65 (235)
T d1qama_           5 TSKHNIDKIMTNIRLNEHDNIFEIGSGK---------------GHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD-   65 (235)
T ss_dssp             CCHHHHHHHHTTCCCCTTCEEEEECCTT---------------SHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT-
T ss_pred             CCHHHHHHHHHhcCCCCCCeEEEECCCc---------------hHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc-
Confidence            4445444444445556778999999999               9999999986   36899999999999998886643 


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHH
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELL  230 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~  230 (294)
                        .++++++++|+.+.-  +    +......|+.+.+-.-...++..+
T Consensus        66 --~~n~~i~~~D~l~~~--~----~~~~~~~vv~NLPYnIss~il~~l  105 (235)
T d1qama_          66 --HDNFQVLNKDILQFK--F----PKNQSYKIFGNIPYNISTDIIRKI  105 (235)
T ss_dssp             --CCSEEEECCCGGGCC--C----CSSCCCEEEEECCGGGHHHHHHHH
T ss_pred             --ccchhhhhhhhhhcc--c----cccccceeeeeehhhhhHHHHHHH
Confidence              357999999998751  1    122334566666543334444444

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.14  E-value=1.3e-06  Score=76.19  Aligned_cols=95  Identities=17%  Similarity=0.145  Sum_probs=72.6

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +.++|+|||||+               |..+..++++.| +.+++..|+.+-        ++.+...+++++..+|..+.
T Consensus        81 ~~~~vvDvGGG~---------------G~~~~~l~~~~P-~l~~~v~Dlp~v--------i~~~~~~~r~~~~~~d~~~~  136 (243)
T d1kyza2          81 GLKSLVDVGGGT---------------GAVINTIVSKYP-TIKGINFDLPHV--------IEDAPSYPGVEHVGGDMFVS  136 (243)
T ss_dssp             SCSEEEEETCTT---------------SHHHHHHHHHCT-TSEEEEEECTTT--------TTTCCCCTTEEEEECCTTTC
T ss_pred             CCcEEEEecCCC---------------cHHHHHHHHHCC-CCeEEEcccHHh--------hhhcccCCceEEeccccccc
Confidence            457899999999               999999999997 889999999653        34555678999999998754


Q ss_pred             HHHHhhcCCCCceeEEEE-----cCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          199 LKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfi-----D~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      ++         ..|..++     |.+.+....+++.+.+.|+|||.+++.+..
T Consensus       137 ~P---------~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~  180 (243)
T d1kyza2         137 IP---------KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI  180 (243)
T ss_dssp             CC---------CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred             CC---------CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence            22         2344433     223456778999999999999987776654

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.3e-05  Score=71.70  Aligned_cols=103  Identities=18%  Similarity=0.186  Sum_probs=77.9

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +++...+-+...+...+..+|||||+|+               |..|..++..   +.+|+++|+|+..++..++.+...
T Consensus         5 ~d~~i~~kIv~~~~~~~~d~VlEIGPG~---------------G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~   66 (278)
T d1zq9a1           5 KNPLIINSIIDKAALRPTDVVLEVGPGT---------------GNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGT   66 (278)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEECCTT---------------STTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEEECCCc---------------hHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhh
Confidence            4555555555555566677999999999               9999999987   369999999999999999998877


Q ss_pred             CCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHH
Q 022597          183 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLL  231 (294)
Q Consensus       183 gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~  231 (294)
                      ...++++++++|+.+.-        ...++.|+.+-+-.-...++..+.
T Consensus        67 ~~~~~~~~i~~D~l~~~--------~~~~~~vV~NLPY~Iss~il~~~~  107 (278)
T d1zq9a1          67 PVASKLQVLVGDVLKTD--------LPFFDTCVANLPYQISSPFVFKLL  107 (278)
T ss_dssp             TTGGGEEEEESCTTTSC--------CCCCSEEEEECCGGGHHHHHHHHH
T ss_pred             ccccchhhhHHHHhhhh--------hhhhhhhhcchHHHHHHHHHHHHH
Confidence            66778999999997641        234567777766444455555544

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.05  E-value=5.1e-06  Score=69.93  Aligned_cols=105  Identities=18%  Similarity=0.250  Sum_probs=66.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC----C---CCcEEEEEeCChHHHHHHHHH-------------
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL----P---ESGCLVACERDARSLEVAKKY-------------  178 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~----~---~~~~v~~id~~~~~~~~A~~~-------------  178 (294)
                      ++-+|+++||+|               |--...+|..+    .   ...+|+++|+|+..++.|++-             
T Consensus        24 ~~lrIwsaGCst---------------GeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~   88 (193)
T d1af7a2          24 GEYRVWSAAAST---------------GEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQ   88 (193)
T ss_dssp             SCEEEEESCCTT---------------THHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHH
T ss_pred             CCeEEEEeCCCC---------------chhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHH
Confidence            344999999999               97554443322    1   134799999999999998732             


Q ss_pred             -----HHHhCCC------------CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcC-----CccchHHHHHHHHhcccC
Q 022597          179 -----YERAGVS------------HKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRV  236 (294)
Q Consensus       179 -----~~~~gl~------------~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~-----~~~~~~~~~~~~~~lLkp  236 (294)
                           +.+.+..            ..+++...+..+..     ....++||+||.-.     .++...+.++.+...|+|
T Consensus        89 ~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p  163 (193)
T d1af7a2          89 QLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQ-----YNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP  163 (193)
T ss_dssp             HHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSS-----CCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE
T ss_pred             HHhhceeecCCCccceeehHHHHHHHHHHhhhhccccc-----cCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC
Confidence                 1111111            11223322222110     01247899998743     355678899999999999


Q ss_pred             CeEEEEe
Q 022597          237 GGIIVID  243 (294)
Q Consensus       237 gG~ivid  243 (294)
                      ||++++-
T Consensus       164 GG~L~lG  170 (193)
T d1af7a2         164 DGLLFAG  170 (193)
T ss_dssp             EEEEEEC
T ss_pred             CcEEEEe
Confidence            9999874

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.88  E-value=5.2e-06  Score=73.31  Aligned_cols=76  Identities=12%  Similarity=0.184  Sum_probs=64.4

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCC--------CCcEEEEE
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--------SHKVKIKH  192 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl--------~~~v~~~~  192 (294)
                      .+|||.-+|.               |.-++.++..   +++|++||.+|......+..++++..        ..++++++
T Consensus        90 ~~VlD~TaGl---------------G~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~  151 (250)
T d2oyra1          90 PDVVDATAGL---------------GRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_dssp             CCEEETTCTT---------------CHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             CEEEECCCcc---------------cHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence            3899999999               9999999876   58999999999999888888877643        24799999


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      +|+.++++.+     .++||+|++|+.
T Consensus       152 ~Ds~~~L~~~-----~~~~DvIYlDPM  173 (250)
T d2oyra1         152 ASSLTALTDI-----TPRPQVVYLDPM  173 (250)
T ss_dssp             SCHHHHSTTC-----SSCCSEEEECCC
T ss_pred             CcHHHHHhcc-----CCCCCEEEECCC
Confidence            9999987654     578999999985

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.86  E-value=4.9e-05  Score=70.86  Aligned_cols=138  Identities=9%  Similarity=0.069  Sum_probs=101.7

Q ss_pred             hHHHHHHHHHHH----cC---CCCCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHH
Q 022597           83 PEILRQLREETA----GM---RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALV  155 (294)
Q Consensus        83 ~~~L~~~~~~~~----~~---~~~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~  155 (294)
                      .+.+-++.|...    ..   ...+.-.++...++|..++......+|+|-.||+               |...+.+...
T Consensus       119 ~d~~g~~yE~ll~~~~~~~~k~~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGs---------------G~fL~~a~~~  183 (425)
T d2okca1         119 GDVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGT---------------GGFLLTAYDY  183 (425)
T ss_dssp             SHHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTT---------------CHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhhccchhhccchhhhHhhheeccCcccceeecccccc---------------CccHHHHHHH
Confidence            456666655532    11   1245567788899999999887888999999999               8777777665


Q ss_pred             CCCC------------cEEEEEeCChHHHHHHHHHHHHhCCC-CcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--
Q 022597          156 LPES------------GCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--  220 (294)
Q Consensus       156 ~~~~------------~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--  220 (294)
                      +...            ..++++|+++.....|+-++-..|.. ....+..+|..+..       ...+||+|+.+++-  
T Consensus       184 ~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~-------~~~~fD~Ii~NPPfg~  256 (425)
T d2okca1         184 MKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKE-------PSTLVDVILANPPFGT  256 (425)
T ss_dssp             HHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSC-------CSSCEEEEEECCCSSC
T ss_pred             HHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhh-------cccccceEEecCCCCC
Confidence            4321            25899999999999999999888765 34677888876431       25789999998762  


Q ss_pred             ------------------cchHHHHHHHHhcccCCeEEEE
Q 022597          221 ------------------RMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       221 ------------------~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                                        ..+..+++.+..+|++||.+++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i  296 (425)
T d2okca1         257 RPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  296 (425)
T ss_dssp             CCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEE
Confidence                              1145689999999999996543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=8.4e-05  Score=61.90  Aligned_cols=99  Identities=19%  Similarity=0.239  Sum_probs=70.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +..+|||+||+.               |..+..+....+..+.++++|+.+-           ..+ +.+.++++|..+.
T Consensus        22 ~~~~vlDLg~aP---------------Ggw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~   74 (180)
T d1ej0a_          22 PGMTVVDLGAAP---------------GGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDE   74 (180)
T ss_dssp             TTCEEEEESCTT---------------CHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSH
T ss_pred             CCCeEEEEeccC---------------CcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccc
Confidence            456999999999               8889988887777899999998773           123 4688999988653


Q ss_pred             H--HHHhhcCCCCceeEEEEcCCcc-----c---------hHHHHHHHHhcccCCeEEEEec
Q 022597          199 L--KALILNGEASSYDFAFVDAEKR-----M---------YQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       199 l--~~l~~~~~~~~fD~vfiD~~~~-----~---------~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .  .........+++|+|+.|....     .         ....+..+.+.|++||.+|+--
T Consensus        75 ~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_          75 LVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence            2  1111111257899999996521     1         2234455568999999999873

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=2.1e-05  Score=64.68  Aligned_cols=107  Identities=16%  Similarity=0.214  Sum_probs=71.7

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++++||-+|+|.+              |..++.+++... ..+|+++|.+++.++.|++    .|...-+.....+..
T Consensus        26 ~~~G~~VlV~GaG~i--------------G~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~   86 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPL--------------GLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGADLTLNRRETSVE   86 (182)
T ss_dssp             CCBTCEEEEECCSHH--------------HHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHH
T ss_pred             CCCCCEEEEECCCcc--------------chhheecccccc-ccccccccccccccccccc----ccceEEEeccccchH
Confidence            345679999999875              888888998874 2389999999999887764    454322222223333


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +..+...+......+|.||...+..   ..++.+.+.|++||.+++-.+
T Consensus        87 ~~~~~i~~~~~~~g~Dvvid~vG~~---~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2          87 ERRKAIMDITHGRGADFILEATGDS---RALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             HHHHHHHHHTTTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             HHHHHHHHhhCCCCceEEeecCCch---hHHHHHHHHhcCCCEEEEEee
Confidence            3333333322245699998766432   346778899999999987654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=2.1e-05  Score=69.25  Aligned_cols=75  Identities=12%  Similarity=-0.056  Sum_probs=59.1

Q ss_pred             CCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          103 VSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       103 v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +++....-+...+...++..|||||||+               |..|..|+..   +.+|++||+|++.++..++.+.  
T Consensus         5 ~d~~~~~~Iv~~~~~~~~d~vlEIGpG~---------------G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--   64 (252)
T d1qyra_           5 NDQFVIDSIVSAINPQKGQAMVEIGPGL---------------AALTEPVGER---LDQLTVIELDRDLAARLQTHPF--   64 (252)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEEECCTT---------------TTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT--
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCc---------------hHHHHHHHcc---CCceEEEEeccchhHHHHHHhh--
Confidence            4555555555666666788999999999               9999999875   4689999999999988876433  


Q ss_pred             CCCCcEEEEEcchhhh
Q 022597          183 GVSHKVKIKHGLAADS  198 (294)
Q Consensus       183 gl~~~v~~~~gda~~~  198 (294)
                       ..++++++++|+.+.
T Consensus        65 -~~~~~~ii~~D~l~~   79 (252)
T d1qyra_          65 -LGPKLTIYQQDAMTF   79 (252)
T ss_dssp             -TGGGEEEECSCGGGC
T ss_pred             -hccchhHHhhhhhhh
Confidence             335899999999863

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.69  E-value=3.4e-06  Score=74.14  Aligned_cols=91  Identities=11%  Similarity=0.092  Sum_probs=67.3

Q ss_pred             CCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER  181 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~  181 (294)
                      .+++...+-+...+.+.+..+|||||||+               |..|..++..   +.+|++||+|+++++.+++.+. 
T Consensus        12 L~d~~ii~kIv~~~~~~~~d~VLEIGpG~---------------G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~-   72 (245)
T d1yuba_          12 LTSEKVLNQIIKQLNLKETDTVYEIGTGK---------------GHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK-   72 (245)
T ss_dssp             CCCTTTHHHHHHHCCCCSSEEEEECSCCC---------------SSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT-
T ss_pred             cCCHHHHHHHHHhcCCCCCCeEEEECCCc---------------cHHHHHHHhh---cCceeEeeecccchhhhhhhhh-
Confidence            44555544455555566777999999999               9999999987   4699999999999888776553 


Q ss_pred             hCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          182 AGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       182 ~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                        ...+++++++|+.+.-  +    +...++.|+.+.+
T Consensus        73 --~~~n~~ii~~D~l~~~--~----~~~~~~~vv~NLP  102 (245)
T d1yuba_          73 --LNTRVTLIHQDILQFQ--F----PNKQRYKIVGNIP  102 (245)
T ss_dssp             --TCSEEEECCSCCTTTT--C----CCSSEEEEEEECC
T ss_pred             --hccchhhhhhhhhccc--c----ccceeeeEeeeee
Confidence              3458999999998641  1    1356666776655

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.00017  Score=58.46  Aligned_cols=107  Identities=14%  Similarity=0.177  Sum_probs=72.3

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ++.++++|+=+|+|.+              |..++.+++..+ ..+|+++|.+++.++.|++    .|....+.....+.
T Consensus        23 ~~~~gd~VlI~G~G~i--------------G~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~----~Ga~~~~~~~~~~~   83 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPI--------------GMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGADLVLQISKESP   83 (171)
T ss_dssp             TCCTTCEEEEECCSHH--------------HHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEECSSCCH
T ss_pred             CCCCCCEEEEECCCcc--------------HHHHHHHHHHcC-CceEEeccCCHHHHHHHHH----hCCccccccccccc
Confidence            4556779999999876              888888888864 3489999999999887765    45443222212222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+..+.+.. .....+|+||.-.+.   ...++.+.+++++||.+++-.+
T Consensus        84 ~~~~~~~~~-~~g~g~Dvvid~~G~---~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          84 QEIARKVEG-QLGCKPEVTIECTGA---EASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             HHHHHHHHH-HHTSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             ccccccccc-cCCCCceEEEeccCC---chhHHHHHHHhcCCCEEEEEec
Confidence            222222211 114679999876654   3568889999999999988654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.59  E-value=9.3e-05  Score=60.44  Aligned_cols=104  Identities=21%  Similarity=0.285  Sum_probs=72.3

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ++.++++|+-+|+|.+              |..+..+++... ...++++|.+++.++.+++    .|..+-+.....|.
T Consensus        25 ~~~~g~~VlI~G~G~i--------------G~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~----~Ga~~~i~~~~~~~   85 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAV--------------GLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATHVINSKTQDP   85 (174)
T ss_dssp             CCCTTCEEEEESCSHH--------------HHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSEEEETTTSCH
T ss_pred             CCCCCCEEEEeCCCHH--------------Hhhhhhcccccc-cceeeeeccHHHHHHHHHH----cCCeEEEeCCCcCH
Confidence            3456679999999875              888888888775 4578899999998877765    46543222222233


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+.++++.    .+.+|.||...+.   ...++.+.++++|+|.+++-.+
T Consensus        86 ~~~i~~~t----~gg~D~vid~~G~---~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          86 VAAIKEIT----DGGVNFALESTGS---PEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             HHHHHHHT----TSCEEEEEECSCC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHHHHc----CCCCcEEEEcCCc---HHHHHHHHhcccCceEEEEEee
Confidence            33333331    4579999987754   3567788999999999987554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.55  E-value=0.0005  Score=55.21  Aligned_cols=105  Identities=16%  Similarity=0.253  Sum_probs=71.6

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      .+..++++|+-+|+|.+              |..++.+++..  +++|+++|.+++.++.|++.    |..  ..+..-+
T Consensus        22 ~~~~~g~~vlV~G~G~v--------------G~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~   79 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPI--------------GLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC----GAD--VTLVVDP   79 (170)
T ss_dssp             HTCCTTCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----TCS--EEEECCT
T ss_pred             hCCCCCCEEEEEccccc--------------chhhHhhHhhh--cccccccchHHHHHHHHHHc----CCc--EEEeccc
Confidence            34556789999999875              88888888876  47999999999998887763    332  2222211


Q ss_pred             ----hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 ----AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 ----a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                          ..+....+.. ...+.+|+||...+.   ...++.+.+++++||.+++-..
T Consensus        80 ~~~~~~~~~~~~~~-~~g~g~D~vid~~g~---~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          80 AKEEESSIIERIRS-AIGDLPNVTIDCSGN---EKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             TTSCHHHHHHHHHH-HSSSCCSEEEECSCC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             cccccchhhhhhhc-ccccCCceeeecCCC---hHHHHHHHHHHhcCCceEEEec
Confidence                1122222221 124679999876653   3567788899999999998654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00028  Score=67.45  Aligned_cols=124  Identities=8%  Similarity=0.004  Sum_probs=89.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCC-----------------cE
Q 022597           99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPES-----------------GC  161 (294)
Q Consensus        99 ~~~~v~~~~~~lL~~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~-----------------~~  161 (294)
                      .+.-.++...++|..++....+.+|+|-.||+               |...+.....+...                 ..
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGs---------------G~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  208 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGT---------------AGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA  208 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTT---------------THHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTS
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhc---------------chhhHHHHHHHHHhcCcccccchhHHHHHHHhh
Confidence            45556778899999998888888999999999               77766665543211                 25


Q ss_pred             EEEEeCChHHHHHHHHHHHHhCCCCc----EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc----------------
Q 022597          162 LVACERDARSLEVAKKYYERAGVSHK----VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR----------------  221 (294)
Q Consensus       162 v~~id~~~~~~~~A~~~~~~~gl~~~----v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~----------------  221 (294)
                      ++|+|+++.....|+-++--.|....    -.+..++....-..     ...+||+|+.+++-.                
T Consensus       209 ~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~-----~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~  283 (524)
T d2ar0a1         209 FIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGE-----NLPKAHIVATNPPFGSAAGTNITRTFVHPTS  283 (524)
T ss_dssp             EEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHH-----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCS
T ss_pred             hhhhccCHHHHHHHHHHHHhhcccccccccchhhhhhhhhhccc-----ccccceeEEecCCccccccccchhhhccccc
Confidence            89999999999999998887765432    23455555432111     146899999988621                


Q ss_pred             -chHHHHHHHHhcccCCeEEEE
Q 022597          222 -MYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       222 -~~~~~~~~~~~lLkpgG~ivi  242 (294)
                       ....|++.+...|++||.+.+
T Consensus       284 ~~~~~Fi~~~l~~Lk~gGr~ai  305 (524)
T d2ar0a1         284 NKQLCFMQHIIETLHPGGRAAV  305 (524)
T ss_dssp             CHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccHHHHHHHHHhccccCcEEE
Confidence             144689999999999987554

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.40  E-value=0.00021  Score=59.73  Aligned_cols=109  Identities=19%  Similarity=0.167  Sum_probs=74.3

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      +.+.++++||-+|||.+              |..++.+++... ..+|+++|.+++.++.|+++    |..+-+.....+
T Consensus        21 a~v~~G~tVlV~GaG~v--------------Gl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~----Ga~~~~~~~~~~   81 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPV--------------GLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ----GFEIADLSLDTP   81 (195)
T ss_dssp             TTCCTTCEEEEECCSHH--------------HHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCEEEETTSSSC
T ss_pred             hCCCCCCEEEEECcCHH--------------HHHHHHHHHhhc-ccceeeecccchhhHhhhhc----cccEEEeCCCcC
Confidence            45667789999999875              777777887765 56999999999998877653    543211111223


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCcc------------chHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKR------------MYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~------------~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+.+.++.   ....+|.+|...+.+            .-.+.++.+.+.++|||.+++-.+
T Consensus        82 ~~~~i~~~t---~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          82 LHEQIAALL---GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             HHHHHHHHH---SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             HHHHHHHHh---CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            333333331   245799998655421            135789999999999999998765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.39  E-value=0.00033  Score=56.21  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=68.9

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ....++++|+-+|+|.+              |..++.+++..  +.+|+++|.+++.++.++    +.|..+-+.....+
T Consensus        23 ~~~~~g~~VlV~GaG~v--------------G~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~----~~Ga~~~i~~~~~~   82 (166)
T d1llua2          23 TNARPGQWVAISGIGGL--------------GHVAVQYARAM--GLHVAAIDIDDAKLELAR----KLGASLTVNARQED   82 (166)
T ss_dssp             HTCCTTCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESCHHHHHHHH----HTTCSEEEETTTSC
T ss_pred             hCCCCCCEEEEeecccc--------------HHHHHHHHHHc--CCccceecchhhHHHhhh----ccCccccccccchh
Confidence            45667789999999876              88888888887  489999999999887665    45654322222222


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ..+.+...     ...+|.++.+...   ...++.+.++|++||.+++-.
T Consensus        83 ~~~~~~~~-----~~g~~~~i~~~~~---~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          83 PVEAIQRD-----IGGAHGVLVTAVS---NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             HHHHHHHH-----HSSEEEEEECCSC---HHHHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHHh-----hcCCccccccccc---chHHHHHHHHhcCCcEEEEEE
Confidence            22223222     2346666665543   346778899999999998743

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.34  E-value=0.00023  Score=58.31  Aligned_cols=106  Identities=21%  Similarity=0.276  Sum_probs=70.6

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      +.+.++++|+=+|||.+              |..++.+++... ..+|+++|.+++..+.|+    +.|..+-+.....+
T Consensus        23 a~~~~g~~VlI~GaG~v--------------Gl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~----~lGa~~~i~~~~~~   83 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAV--------------GLMGIAGAKLRG-AGRIIGVGSRPICVEAAK----FYGATDILNYKNGH   83 (174)
T ss_dssp             TTCCTTCCEEEECCSHH--------------HHHHHHHHHTTT-CSCEEEECCCHHHHHHHH----HHTCSEEECGGGSC
T ss_pred             hCCCCCCEEEEEcCCcc--------------hhhhhhhhhccc-ccccccccchhhhHHHHH----hhCccccccccchh
Confidence            45566778999999865              778888888653 347999999999887775    45644322222222


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+.+.++   .....+|+||.-.+..   ..++.+.+.++|+|.+++-.+
T Consensus        84 ~~~~v~~~---t~g~G~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          84 IEDQVMKL---TNGKGVDRVIMAGGGS---ETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             HHHHHHHH---TTTSCEEEEEECSSCT---THHHHHHHHEEEEEEEEECCC
T ss_pred             HHHHHHHH---hhccCcceEEEccCCH---HHHHHHHHHHhcCCEEEEEee
Confidence            22333332   2245699998876533   456778899999999998544

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.0003  Score=57.04  Aligned_cols=100  Identities=13%  Similarity=0.140  Sum_probs=67.2

Q ss_pred             hhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          117 ILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       117 ~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ..++++||-.|+ |.+              |..++.+++..  ++++++++.+++..+.++    +.|..+-+.....|.
T Consensus        26 ~~~g~~VlV~Ga~G~v--------------G~~aiq~a~~~--G~~vi~~~~~~~~~~~~~----~~Ga~~vi~~~~~~~   85 (174)
T d1yb5a2          26 VKAGESVLVHGASGGV--------------GLAACQIARAY--GLKILGTAGTEEGQKIVL----QNGAHEVFNHREVNY   85 (174)
T ss_dssp             CCTTCEEEEETCSSHH--------------HHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTTCSEEEETTSTTH
T ss_pred             CCCCCEEEEEeccccc--------------ccccccccccc--Cccccccccccccccccc----ccCcccccccccccH
Confidence            446679999996 543              77788888886  589999999988776654    467654222222233


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+.+...   .....+|+||-..+.    ..++...+.|+|+|.++.-
T Consensus        86 ~~~i~~~---t~~~g~d~v~d~~g~----~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          86 IDKIKKY---VGEKGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHHHHHH---HCTTCEEEEEESCHH----HHHHHHHHHEEEEEEEEEC
T ss_pred             HHHhhhh---hccCCceEEeecccH----HHHHHHHhccCCCCEEEEE
Confidence            3333322   224679988866542    4678888999999999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00011  Score=59.54  Aligned_cols=102  Identities=22%  Similarity=0.202  Sum_probs=68.2

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ...++++|+-+|+|.+              |..++.+++..  +++|+++|.+++.++.|++    .|..+  .+...+-
T Consensus        24 ~~~~g~~vlI~GaG~v--------------G~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~----lGa~~--~i~~~~~   81 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGI--------------GSMGTLISKAM--GAETYVISRSSRKREDAMK----MGADH--YIATLEE   81 (168)
T ss_dssp             TCSTTCEEEEECCSHH--------------HHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCSE--EEEGGGT
T ss_pred             CcCCCCEEEEECCCCc--------------chhHHHHhhhc--cccccccccchhHHHHhhc----cCCcE--Eeeccch
Confidence            4456779999999865              88888888876  5899999999998877654    56442  2221222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      .+..+..     .+.+|.++.-.... ....++.+.+.|+|+|.+++-.+
T Consensus        82 ~~~~~~~-----~~~~d~vi~~~~~~-~~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          82 GDWGEKY-----FDTFDLIVVCASSL-TDIDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             SCHHHHS-----CSCEEEEEECCSCS-TTCCTTTGGGGEEEEEEEEECCC
T ss_pred             HHHHHhh-----hcccceEEEEecCC-ccchHHHHHHHhhccceEEEecc
Confidence            2333333     56899988643311 11225567899999999988543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.16  E-value=0.00086  Score=53.36  Aligned_cols=103  Identities=22%  Similarity=0.193  Sum_probs=70.1

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ....++++||=.|+|.+              |...+.+++..  +++|++++.+++.++.+++    .|...-+.....|
T Consensus        23 ~~~~~g~~vlv~G~G~i--------------G~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~   82 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGL--------------GHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKED   82 (168)
T ss_dssp             HTCCTTCEEEEECCSTT--------------HHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSC
T ss_pred             hCCCCCCEEEEeecccc--------------hhhhhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcceecccccch
Confidence            45567789999999986              88888888876  4789999999998876654    5654222222223


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+.++..     ...+|.++.++.-   ...++...+.|+|||.+++-.+
T Consensus        83 ~~~~~~~~-----~~~~~~~v~~~~~---~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2          83 AAKFMKEK-----VGGVHAAVVTAVS---KPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             HHHHHHHH-----HSSEEEEEESSCC---HHHHHHHHHHEEEEEEEEECCC
T ss_pred             hhhhcccc-----cCCCceEEeecCC---HHHHHHHHHHhccCCceEeccc
Confidence            33334443     2445556666642   4667889999999999998543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.06  E-value=0.0022  Score=51.35  Aligned_cols=105  Identities=15%  Similarity=0.204  Sum_probs=70.5

Q ss_pred             hhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          116 QILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ...++++|+=+|+ |.+              |..++.++++.. ..+|+++|.+++..+.+++    .|...   ++..+
T Consensus        24 ~~~~g~~vlV~G~~G~v--------------G~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~----~Ga~~---~i~~~   81 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGL--------------GTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGADY---VINAS   81 (170)
T ss_dssp             TCCTTCEEEEETTTSHH--------------HHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCSE---EEETT
T ss_pred             CCCCCCEEEEEeccccc--------------eeeeeecccccc-cccccccccchhhHHHHHH----cCCce---eeccC
Confidence            4556779999996 432              666666777653 4689999999998877764    46432   33333


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ..+..+...+....+.||.+|...+.   ...++.+.+.++|||.+++-.+
T Consensus        82 ~~~~~~~~~~~~~~~~~d~vid~~g~---~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2          82 MQDPLAEIRRITESKGVDAVIDLNNS---EKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             TSCHHHHHHHHTTTSCEEEEEESCCC---HHHHTTGGGGEEEEEEEEECCS
T ss_pred             CcCHHHHHHHHhhcccchhhhccccc---chHHHhhhhhcccCCEEEEecc
Confidence            33444444433335679988876643   3556778899999999987643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.96  E-value=0.00098  Score=53.81  Aligned_cols=102  Identities=15%  Similarity=0.196  Sum_probs=69.3

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++++||-+|+|.+              |..++.+++... ..+++++|.+++.++.+++    .|..   .++..+. 
T Consensus        30 ~~~g~~vli~GaG~v--------------G~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~----~ga~---~~i~~~~-   86 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGL--------------GHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGAD---HVVDARR-   86 (172)
T ss_dssp             CCTTCEEEEECCSHH--------------HHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCS---EEEETTS-
T ss_pred             cCCCCEEEEeCCChH--------------HHHHHHHHHhhc-CcccccccchhHHHHHHhh----cccc---eeecCcc-
Confidence            345679999999875              777778887764 4688999999998777664    4433   2333221 


Q ss_pred             hhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          197 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       197 ~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      +..+...+......+|.||...+..   ..++...+.|++||.+++-.
T Consensus        87 ~~~~~~~~~~~~~g~d~vid~~g~~---~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          87 DPVKQVMELTRGRGVNVAMDFVGSQ---ATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             CHHHHHHHHTTTCCEEEEEESSCCH---HHHHHGGGGEEEEEEEEECC
T ss_pred             cHHHHHHHhhCCCCceEEEEecCcc---hHHHHHHHHHhCCCEEEEEe
Confidence            2222222222245799999877543   45778899999999999754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.83  E-value=0.0019  Score=52.76  Aligned_cols=103  Identities=16%  Similarity=0.229  Sum_probs=69.7

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc--
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL--  194 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd--  194 (294)
                      ..++++|+=+|||.+              |..++.+++... ..+|+.+|.+++.++.|++    .|..+-+.....|  
T Consensus        26 v~~G~~VlV~G~G~i--------------Gl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~----~Ga~~~i~~~~~~~~   86 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCV--------------GLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKP   86 (174)
T ss_dssp             CCTTCEEEEECCSHH--------------HHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSC
T ss_pred             CCCCCEEEEECCChH--------------HHHHHHHHHHhC-CceeeeeccchHHHHHHHH----hCCCcccCCccchhh
Confidence            345679999999986              888889999875 4589999999998766654    4544322211111  


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid~v  245 (294)
                      ........    ..+.+|.+|.-.+.   ...++.+.+.+++| |.+++-.+
T Consensus        87 ~~~~~~~~----~~~G~d~vie~~G~---~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          87 VQDVITEL----TAGGVDYSLDCAGT---AQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             HHHHHHHH----HTSCBSEEEESSCC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             hhhhHhhh----hcCCCcEEEEeccc---chHHHHHHHHhhcCCeEEEecCC
Confidence            11122222    14679999987653   45688889999996 99987543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0021  Score=51.67  Aligned_cols=105  Identities=13%  Similarity=0.087  Sum_probs=68.4

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ++.++++||=.|++.+.             |...+.+++..  +++|++++.+++..+.++    +.|..+-+.....| 
T Consensus        25 ~l~~g~~Vlv~ga~g~v-------------G~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~----~lGa~~vi~~~~~d-   84 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGV-------------GLIACQWAKAL--GAKLIGTVGTAQKAQSAL----KAGAWQVINYREED-   84 (179)
T ss_dssp             CCCTTCEEEESSTTBHH-------------HHHHHHHHHHH--TCEEEEEESSHHHHHHHH----HHTCSEEEETTTSC-
T ss_pred             CCCCCCEEEEEcccccc-------------chHHHHHHHHh--CCeEeecccchHHHHHHH----hcCCeEEEECCCCC-
Confidence            44567799999776522             66677777775  589999999999887765    45654322222233 


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                        ..+++.+......+|+||--.+.+    .++.....++++|.+++....
T Consensus        85 --~~~~v~~~t~g~g~d~v~d~~g~~----~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2          85 --LVERLKEITGGKKVRVVYDSVGRD----TWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             --HHHHHHHHTTTCCEEEEEECSCGG----GHHHHHHTEEEEEEEEECCCT
T ss_pred             --HHHHHHHHhCCCCeEEEEeCccHH----HHHHHHHHHhcCCeeeecccc
Confidence              333333323356799877655433    456788999999988775443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.0024  Score=57.30  Aligned_cols=79  Identities=9%  Similarity=0.004  Sum_probs=58.9

Q ss_pred             CCCCCHHHHHHHHHHHhhh------CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHH
Q 022597          100 QMQVSPDQAQLLAMLVQIL------GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLE  173 (294)
Q Consensus       100 ~~~v~~~~~~lL~~l~~~~------~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~  173 (294)
                      ...+++...+-+...+.+.      ....|||||.|.               |..|..+..... ..+|+++|.|+...+
T Consensus        18 nfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~---------------G~LT~~Ll~~~~-~~~v~~iE~D~~~~~   81 (322)
T d1i4wa_          18 KYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGV---------------GIQSAIFYNKYC-PRQYSLLEKRSSLYK   81 (322)
T ss_dssp             CCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTT---------------CHHHHHHHHHHC-CSEEEEECCCHHHHH
T ss_pred             cccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCC---------------CHHHHHHHhcCC-CCEEEEEECCHHHHH
Confidence            3456666655555554433      345799999999               999999987642 258999999999998


Q ss_pred             HHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          174 VAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       174 ~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      ..++.++    .++++++++|+..+
T Consensus        82 ~L~~~~~----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          82 FLNAKFE----GSPLQILKRDPYDW  102 (322)
T ss_dssp             HHHHHTT----TSSCEEECSCTTCH
T ss_pred             HHHHhcc----CCCcEEEeCchhhc
Confidence            8877653    35799999998754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.007  Score=48.71  Aligned_cols=97  Identities=14%  Similarity=0.131  Sum_probs=65.0

Q ss_pred             HhhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEc
Q 022597          115 VQILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG  193 (294)
Q Consensus       115 ~~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~g  193 (294)
                      .+..++++||=.|. |.+              |..++.+++..  +++|++++.+++..+.++    +.|.++-+     
T Consensus        23 ~~~~~g~~VlI~ga~G~v--------------G~~aiqlak~~--G~~vi~~~~~~~~~~~~~----~lGa~~~i-----   77 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGAL--------------GTAAVQVARAM--GLRVLAAASRPEKLALPL----ALGAEEAA-----   77 (171)
T ss_dssp             TTCCTTCEEEESSTTBHH--------------HHHHHHHHHHT--TCEEEEEESSGGGSHHHH----HTTCSEEE-----
T ss_pred             hCCCCCCEEEEEeccccc--------------hhhhhhhhccc--cccccccccccccccccc----ccccceee-----
Confidence            34567779999885 543              77777788876  589999999998776554    46665322     


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      |..+.......   ...+|+||--.+     ..++...+.|+|||.++.-.
T Consensus        78 ~~~~~~~~~~~---~~g~D~v~d~~G-----~~~~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          78 TYAEVPERAKA---WGGLDLVLEVRG-----KEVEESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EGGGHHHHHHH---TTSEEEEEECSC-----TTHHHHHTTEEEEEEEEEC-
T ss_pred             ehhhhhhhhhc---cccccccccccc-----hhHHHHHHHHhcCCcEEEEe
Confidence            33343333321   467999876443     23577889999999998643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.40  E-value=0.004  Score=50.53  Aligned_cols=104  Identities=15%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc-
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd-  194 (294)
                      +..++++|+-+|+|.+              |..++.++++.. ..+|+++|.+++.++.|++    .|-.+-+.....| 
T Consensus        24 ~~~~G~~VlV~GaGgv--------------Gl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~----lGa~~~i~~~~~d~   84 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGV--------------GFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGATECLNPKDYDK   84 (174)
T ss_dssp             CCCTTCEEEEECCSHH--------------HHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSS
T ss_pred             CCCCCCEEEEECCCch--------------hHHHHHHHHHcC-CceeeccCChHHHHHHHHH----cCCcEEEcCCCchh
Confidence            3456679999999875              778888888765 4689999999999887764    5544322222222 


Q ss_pred             -hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhccc-CCeEEEEecc
Q 022597          195 -AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIR-VGGIIVIDNV  245 (294)
Q Consensus       195 -a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLk-pgG~ivid~v  245 (294)
                       ..+.....    ..+.+|.+|...+..   ..++.....++ ++|.+++-.+
T Consensus        85 ~~~~~~~~~----~~~G~d~vid~~g~~---~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          85 PIYEVICEK----TNGGVDYAVECAGRI---ETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             CHHHHHHHH----TTSCBSEEEECSCCH---HHHHHHHHTBCTTTCEEEECCC
T ss_pred             HHHHHHHHh----cCCCCcEEEEcCCCc---hHHHHHHHHHHHhcCceEEEEE
Confidence             11222222    245799999877543   44555555555 4688887544

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.37  E-value=0.0031  Score=50.69  Aligned_cols=101  Identities=15%  Similarity=0.186  Sum_probs=66.7

Q ss_pred             hhhCCCeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          116 QILGAQRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       116 ~~~~~~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      ++.++++||=.|. |.+              |..++.+++..  +++++++..+++..+.++    +.|..+   ++...
T Consensus        22 ~~~~g~~VlI~ga~g~v--------------G~~~iqla~~~--g~~vi~~~~~~~~~~~l~----~~Ga~~---vi~~~   78 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGV--------------GMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVEY---VGDSR   78 (183)
T ss_dssp             CCCTTCEEEETTTTSHH--------------HHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCSE---EEETT
T ss_pred             CCCCCCEEEEECCCCCc--------------ccccchhhccc--cccceeeecccccccccc----cccccc---cccCC
Confidence            3445678998774 443              77788888876  589998888887766554    556653   22222


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      ..+..+.+.+......+|.||--.+.    +.++.+.+.|+++|.++.-
T Consensus        79 ~~~~~~~v~~~t~~~g~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          79 SVDFADEILELTDGYGVDVVLNSLAG----EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             CSTHHHHHHHHTTTCCEEEEEECCCT----HHHHHHHHTEEEEEEEEEC
T ss_pred             ccCHHHHHHHHhCCCCEEEEEecccc----hHHHHHHHHhcCCCEEEEE
Confidence            22333444333334679999976652    4577788999999999873

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.35  E-value=0.0045  Score=50.33  Aligned_cols=105  Identities=14%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch-
Q 022597          117 ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA-  195 (294)
Q Consensus       117 ~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda-  195 (294)
                      ..+++.|+=+|+|.+              |..++.+++... ..+|+++|.+++.++.|++.    |-.+-+.....+. 
T Consensus        27 ~~~g~tVlI~G~Ggv--------------Gl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~   87 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGV--------------GLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKP   87 (176)
T ss_dssp             CCTTCEEEEECCSHH--------------HHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSC
T ss_pred             CCCCCEEEEECCCch--------------hHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc----CCcEEECccccchH
Confidence            345679999999875              777778888764 47999999999999887764    4332222111221 


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHh-cccCCeEEEEeccc
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ-LIRVGGIIVIDNVL  246 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~-lLkpgG~ivid~vl  246 (294)
                      .+.+....   ....+|.++...+..   ..++.... +.+++|.+++-.+.
T Consensus        88 ~~~~~~~~---~g~G~d~vi~~~g~~---~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          88 ISEVLSEM---TGNNVGYTFEVIGHL---ETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             HHHHHHHH---HTSCCCEEEECSCCH---HHHHHHHTTSCTTTCEEEECSCC
T ss_pred             HHHHHHHh---ccccceEEEEeCCch---HHHHHHHHHhhcCCeEEEEEEcc
Confidence            11121111   146799999887543   33344444 44565888876553

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.24  E-value=0.0072  Score=49.58  Aligned_cols=96  Identities=17%  Similarity=0.196  Sum_probs=68.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +|.+|+-||+|..              |..++..|..+  ++.|+.+|.+++.++..+..+..     +++....+....
T Consensus        31 ~pa~V~ViGaGva--------------G~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~~-----~~~~~~~~~~~l   89 (168)
T d1pjca1          31 KPGKVVILGGGVV--------------GTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEI   89 (168)
T ss_dssp             CCCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHH
T ss_pred             CCcEEEEECCChH--------------HHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhcc-----cceeehhhhhhH
Confidence            5669999999984              99999999988  59999999999999877766542     466666555444


Q ss_pred             HHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEE
Q 022597          199 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~iv  241 (294)
                      .+.+      ...|+|+--+-   ++...-.-+...+.+|||.+||
T Consensus        90 ~~~~------~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1          90 ETAV------AEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             HHHH------HTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             HHhh------ccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence            4444      46899985432   2222222345678999998876

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.18  E-value=0.0049  Score=49.92  Aligned_cols=106  Identities=14%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             HHHhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEE
Q 022597          113 MLVQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH  192 (294)
Q Consensus       113 ~l~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~  192 (294)
                      ...+..++++||-.|.+.+.             |..++.+++..  +++|+++..+++..+.+    ++.|..+-+....
T Consensus        23 ~~~~v~~G~~VlV~ga~ggv-------------G~~aiqlak~~--Ga~vi~~~~~~~~~~~~----~~~Ga~~vi~~~~   83 (182)
T d1v3va2          23 EVCGVKGGETVLVSAAAGAV-------------GSVVGQIAKLK--GCKVVGAAGSDEKIAYL----KQIGFDAAFNYKT   83 (182)
T ss_dssp             TTTCCCSSCEEEESSTTSHH-------------HHHHHHHHHHT--TCEEEEEESSHHHHHHH----HHTTCSEEEETTS
T ss_pred             HHhCCCCCCEEEEEeCCCch-------------hHHHHHHHHcc--CCEEEEeCCCHHHHHHH----Hhhhhhhhccccc
Confidence            34455677899988886633             66666777765  58999999999876544    4456543222222


Q ss_pred             cchhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          193 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       193 gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      .+..+.....   .....+|+||-..+    .+.++.+++.|++||.++.-.
T Consensus        84 ~~~~~~~~~~---~~~~Gvd~v~D~vG----~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          84 VNSLEEALKK---ASPDGYDCYFDNVG----GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             CSCHHHHHHH---HCTTCEEEEEESSC----HHHHHHHGGGEEEEEEEEECC
T ss_pred             ccHHHHHHHH---hhcCCCceeEEecC----chhhhhhhhhccCCCeEEeec
Confidence            2222222221   12467999887664    246778999999999998753

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.03  E-value=0.0019  Score=54.16  Aligned_cols=54  Identities=11%  Similarity=0.232  Sum_probs=37.8

Q ss_pred             HHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHH
Q 022597          109 QLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE  180 (294)
Q Consensus       109 ~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~  180 (294)
                      .++..+++..  ++..|||--+|+               |..+.+... +  +-+.+|+|++++.++.|+++++
T Consensus       200 ~L~~~lI~~~s~~gd~VlDpF~GS---------------GTT~~aa~~-~--~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRASSNPNDLVLDCFMGS---------------GTTAIVAKK-L--GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTT---------------CHHHHHHHH-T--TCEEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCc---------------hHHHHHHHH-c--CCeEEEEeCCHHHHHHHHHHHc
Confidence            4566666554  345777776666               655444333 3  4689999999999999999886

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0085  Score=47.79  Aligned_cols=100  Identities=19%  Similarity=0.256  Sum_probs=68.1

Q ss_pred             HhhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          115 VQILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       115 ~~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      .+..++++|+=+|+|.+              |..++.+++..  +++++++|.+++..+.++    +.|...   ++...
T Consensus        26 ~~~~~G~~VlI~GaG~v--------------G~~a~qlak~~--Ga~~i~~~~~~~~~~~a~----~lGad~---~i~~~   82 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGL--------------GHMGIKLAHAM--GAHVVAFTTSEAKREAAK----ALGADE---VVNSR   82 (168)
T ss_dssp             TTCCTTCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEEESSGGGHHHHH----HHTCSE---EEETT
T ss_pred             hCCCCCCEEEEeccchH--------------HHHHHHHhhcc--cccchhhccchhHHHHHh----ccCCcE---EEECc
Confidence            34567789999999875              88888888886  578889999998776554    456542   22222


Q ss_pred             hhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          195 AADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       195 a~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      -.+....     ....+|.+|...+...   .++...+++++||.+++-.+
T Consensus        83 ~~~~~~~-----~~~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          83 NADEMAA-----HLKSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             CHHHHHT-----TTTCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECCC
T ss_pred             hhhHHHH-----hcCCCceeeeeeecch---hHHHHHHHHhcCCEEEEecc
Confidence            2111111     1467999998765432   25567899999999997543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.93  E-value=0.0087  Score=47.49  Aligned_cols=89  Identities=20%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCC---CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~---~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +|+=|||                 |..+-.+++++.   ...+|+++|.+++..+.|++.    |.-+   ....+..+.
T Consensus         3 ~I~IIG~-----------------G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~~~---~~~~~~~~~   58 (171)
T d2g5ca2           3 NVLIVGV-----------------GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIID---EGTTSIAKV   58 (171)
T ss_dssp             EEEEESC-----------------SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCS---EEESCGGGG
T ss_pred             EEEEEcc-----------------CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hcch---hhhhhhhhh
Confidence            5777899                 555555555542   246899999999988776643    3322   111222111


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .        ....|+|++..+...+.+.++.+.+.++++.++ +|
T Consensus        59 ~--------~~~~dlIila~p~~~~~~vl~~l~~~~~~~~ii-~d   94 (171)
T d2g5ca2          59 E--------DFSPDFVMLSSPVRTFREIAKKLSYILSEDATV-TD   94 (171)
T ss_dssp             G--------GTCCSEEEECSCHHHHHHHHHHHHHHSCTTCEE-EE
T ss_pred             h--------ccccccccccCCchhhhhhhhhhhccccccccc-cc
Confidence            0        246899999998888899999999999887544 44

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.89  E-value=0.015  Score=46.46  Aligned_cols=104  Identities=14%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      .+.++++||=+|+|.+              |.....+++... ..+|+++|.+++..+.+++    .|..+  .+...+.
T Consensus        25 ~vk~GdtVlV~GaGG~--------------G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~----~Ga~~--~i~~~~~   83 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGV--------------GLSVIMGCKAAG-AARIIGVDINKDKFAKAKE----VGATE--CVNPQDY   83 (176)
T ss_dssp             CCCTTCEEEEECCSHH--------------HHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSE--EECGGGC
T ss_pred             CCCCCCEEEEECCCCc--------------HHHHHHHHHHcC-CceEEeecCcHHHHHHHHH----hCCee--EEecCCc
Confidence            3556679999999753              556666666654 5799999999998877655    34432  2222222


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEEe
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVID  243 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivid  243 (294)
                      .+...........+.+|.+|...+..   ..++.+...+++| |.+++-
T Consensus        84 ~~~~~~~~~~~~~~G~D~vid~~G~~---~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          84 KKPIQEVLTEMSNGGVDFSFEVIGRL---DTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             SSCHHHHHHHHTTSCBSEEEECSCCH---HHHHHHHHHBCTTTCEEEEC
T ss_pred             hhHHHHHHHHHhcCCCCEEEecCCch---hHHHHHHHHHhcCCcceEEe
Confidence            22222222111246799999877543   4456667777775 666654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.86  E-value=0.0081  Score=47.80  Aligned_cols=103  Identities=12%  Similarity=0.179  Sum_probs=65.7

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      ++.++++||=.|+|-+              |..++.+++... ...|+++|.+++..+.++    +.|..+-+..  .+.
T Consensus        25 ~~~~G~tVlI~GaGGv--------------G~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak----~lGa~~~i~~--~~~   83 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGV--------------GLAVIMGCKVAG-ASRIIGVDINKDKFARAK----EFGATECINP--QDF   83 (176)
T ss_dssp             CCCTTCEEEEECCSHH--------------HHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HHTCSEEECG--GGC
T ss_pred             CCCCCCEEEEecchhH--------------HHHHHHHHHHHh-cCceEEEcccHHHHHHHH----HhCCcEEEeC--Cch
Confidence            4556779999999753              778888888774 468999999999877665    4565432211  111


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      .+...........+.+|.||...+.   ...++.+..++++||.+++
T Consensus        84 ~~~~~~~~~~~~~~g~D~vid~~G~---~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          84 SKPIQEVLIEMTDGGVDYSFECIGN---VKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             SSCHHHHHHHHTTSCBSEEEECSCC---HHHHHHHHHTBCTTTCEEE
T ss_pred             hhHHHHHHHHHcCCCCcEeeecCCC---HHHHHHHHHhhcCCceeEE
Confidence            1112111111124679999987653   3566778889999866654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.49  E-value=0.011  Score=48.12  Aligned_cols=121  Identities=16%  Similarity=0.165  Sum_probs=73.2

Q ss_pred             CCHHHHHH-HHHHHhhhCCCeEEEE--ccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          103 VSPDQAQL-LAMLVQILGAQRCIEV--GVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       103 v~~~~~~l-L~~l~~~~~~~~vLEi--G~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      +.+-++-. |.....+.+++.||=+  |+|.+              |..++.+++..  +++++++-.+++..+...+.+
T Consensus        11 ~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~v--------------G~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~   74 (189)
T d1gu7a2          11 VNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAV--------------GKYASQIGKLL--NFNSISVIRDRPNLDEVVASL   74 (189)
T ss_dssp             THHHHHHHHHHSSSCCCTTTCEEEESCTTSHH--------------HHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCCCEEEEEeCCCchH--------------HHHHHHHHhhc--CCeEEEEEecccccchHHhhh
Confidence            44545422 2233445566778877  33322              67777888886  589988877777777777788


Q ss_pred             HHhCCCCcEEEEEcchhhh---HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEec
Q 022597          180 ERAGVSHKVKIKHGLAADS---LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~---l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ++.|.++-+.....+..+.   +++.... ..+.+|++|-..+.    +.++...+.|+|||.++.-.
T Consensus        75 ~~lGad~vi~~~~~~~~~~~~~v~~~~~~-~g~~vdvv~D~vg~----~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2          75 KELGATQVITEDQNNSREFGPTIKEWIKQ-SGGEAKLALNCVGG----KSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HHHTCSEEEEHHHHHCGGGHHHHHHHHHH-HTCCEEEEEESSCH----HHHHHHHHTSCTTCEEEECC
T ss_pred             hhccccEEEeccccchhHHHHHHHHHHhh-ccCCceEEEECCCc----chhhhhhhhhcCCcEEEEEC
Confidence            8888765333222222222   2222111 14679999855442    34567789999999998653

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.35  E-value=0.0044  Score=52.57  Aligned_cols=56  Identities=11%  Similarity=0.033  Sum_probs=40.8

Q ss_pred             HHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          109 QLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       109 ~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      +|+..++...  ++..|||--+|+               |..+++....   +-+.+++|++++..+.|+++++..
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GS---------------GTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGS---------------GVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTT---------------CHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCC---------------cHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            3566665544  455788877777               6655554443   458999999999999999999874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.22  E-value=0.057  Score=42.38  Aligned_cols=79  Identities=14%  Similarity=0.115  Sum_probs=54.3

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchH
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ  224 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~  224 (294)
                      |..+-.+++.+. .+-+|++.|++++..+.+++    .|.-+   ....+. +.         -...|+||+-.+.....
T Consensus         9 G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~~~---~~~~~~-~~---------~~~~DiIilavp~~~~~   71 (165)
T d2f1ka2           9 GLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQLVD---EAGQDL-SL---------LQTAKIIFLCTPIQLIL   71 (165)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTSCS---EEESCG-GG---------GTTCSEEEECSCHHHHH
T ss_pred             cHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhccc---eeeeec-cc---------ccccccccccCcHhhhh
Confidence            555556665552 36789999999988776543    44322   111222 22         25789999998888888


Q ss_pred             HHHHHHHhcccCCeEEE
Q 022597          225 EYFELLLQLIRVGGIIV  241 (294)
Q Consensus       225 ~~~~~~~~lLkpgG~iv  241 (294)
                      +.++.+.+.++++.+++
T Consensus        72 ~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          72 PTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             HHHHHHGGGSCTTCEEE
T ss_pred             hhhhhhhhhccccccee
Confidence            99999999999988664

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.12  E-value=0.048  Score=44.09  Aligned_cols=97  Identities=15%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             CeEEEEcc-ccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          121 QRCIEVGV-YTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       121 ~~vLEiG~-g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      +.||=.|. |.+              |..++.+++... ...|+++..+++....   ..+..|...-+.....+..+.+
T Consensus        32 etVLI~gaaGgV--------------G~~aiQlak~~G-a~~vi~~~~~~e~~~~---l~~~~gad~vi~~~~~~~~~~~   93 (187)
T d1vj1a2          32 QTMVVSGAAGAC--------------GSLAGQIGHLLG-CSRVVGICGTQEKCLF---LTSELGFDAAVNYKTGNVAEQL   93 (187)
T ss_dssp             CEEEESSTTSTT--------------GGGHHHHHHHTT-CSEEEEEESSHHHHHH---HHHHSCCSEEEETTSSCHHHHH
T ss_pred             CEEEEECCCchh--------------hHHHHHHHHHcC-CcceecccchHHHHhh---hhhcccceEEeeccchhHHHHH
Confidence            67888874 543              889999999874 3467777777665432   2334565543333333444444


Q ss_pred             HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEe
Q 022597          200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +..   . ...+|+||-..+    .+.++...+.|++||.++.-
T Consensus        94 ~~~---~-~~GvDvv~D~vG----g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          94 REA---C-PGGVDVYFDNVG----GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHH---C-TTCEEEEEESSC----HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHH---h-ccCceEEEecCC----chhHHHHhhhccccccEEEe
Confidence            444   2 456999986665    24678899999999999864

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.07  E-value=0.0038  Score=53.72  Aligned_cols=56  Identities=9%  Similarity=0.080  Sum_probs=38.8

Q ss_pred             HHHHHHHhhh--CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHh
Q 022597          109 QLLAMLVQIL--GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA  182 (294)
Q Consensus       109 ~lL~~l~~~~--~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~  182 (294)
                      .|+..++...  ++..|||.-+|+               |..+.+.. .+  +-+.+|||++++.++.|++++.+.
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GS---------------GTT~~AA~-~l--gR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGS---------------NTTGLVAE-RE--SRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTT---------------CHHHHHHH-HT--TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             HHHHHhhhhcccCCCEEEecCCCC---------------cHHHHHHH-Hc--CCcEEEEeCCHHHHHHHHHHHHhc
Confidence            3455555443  446888877777               65544433 33  568999999999999999887654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.95  E-value=0.044  Score=43.34  Aligned_cols=103  Identities=16%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      +..++++|+=+|+|.+              |..++.++.... ...|+++|.+++.++.++    +.|-.+-+.....+ 
T Consensus        25 ~~k~g~~VlI~G~Gg~--------------g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~----~~GAd~~in~~~~~-   84 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAV--------------GLAAVMGCHSAG-AKRIIAVDLNPDKFEKAK----VFGATDFVNPNDHS-   84 (175)
T ss_dssp             CCCTTCEEEEECCSHH--------------HHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCCEEECGGGCS-
T ss_pred             CCCCCCEEEEEecCCc--------------cchHHHHHHHHh-hchheeecchHHHHHHHH----HcCCcEEEcCCCcc-
Confidence            4556679999999874              555555565543 678999999999887665    45644322111111 


Q ss_pred             hhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCC-eEEEE
Q 022597          196 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVI  242 (294)
Q Consensus       196 ~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpg-G~ivi  242 (294)
                       +...........+.+|.+|...+..   ..++.+..++++| |++++
T Consensus        85 -~~~~~~~~~~~~~G~d~vid~~G~~---~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2          85 -EPISQVLSKMTNGGVDFSLECVGNV---GVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             -SCHHHHHHHHHTSCBSEEEECSCCH---HHHHHHHHTBCTTTCEEEE
T ss_pred             -hhHHHHHHhhccCCcceeeeecCCH---HHHHHHHHHhhCCCcceeE
Confidence             1111111111146799999877643   4455666666665 55554

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=94.83  E-value=0.014  Score=50.71  Aligned_cols=117  Identities=12%  Similarity=0.089  Sum_probs=68.4

Q ss_pred             CCCHHHHHHHHHHHh--hhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHH
Q 022597          102 QVSPDQAQLLAMLVQ--ILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYY  179 (294)
Q Consensus       102 ~v~~~~~~lL~~l~~--~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~  179 (294)
                      .++....++....-+  +.+..+|+|+|||.               |..+..++... ....+.++++--...+. -...
T Consensus        47 ~~SR~~~Kl~~~~~~~~~~~~~~vvDlG~~p---------------Ggws~~~a~~~-~v~~V~g~~iG~d~~e~-P~~~  109 (257)
T d2p41a1          47 AVSRGSAKLRWFVERNLVTPEGKVVDLGCGR---------------GGWSYYCGGLK-NVREVKGLTKGGPGHEE-PIPM  109 (257)
T ss_dssp             CSSTHHHHHHHHHHTTSSCCCEEEEEETCTT---------------SHHHHHHHTST-TEEEEEEECCCSTTSCC-CCCC
T ss_pred             CcchHHHHHHHHHHhcCccCCCeEEEecCCC---------------ChHHHHHHhhc-CCCceeEEEecCccccC-Cccc
Confidence            456666665444332  23445999999999               88887776643 24567777762110000 0001


Q ss_pred             HHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc---------cchHHHHHHHHhcccCCeEEEEe
Q 022597          180 ERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK---------RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       180 ~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~---------~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                      +..+. +-+++..++....+       ..+..|.|+.|...         ....+.++.+.+.|+|||-+++-
T Consensus       110 ~~~~~-ni~~~~~~~dv~~l-------~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         110 STYGW-NLVRLQSGVDVFFI-------PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             CSTTG-GGEEEECSCCTTTS-------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             ccccc-ccccchhhhhHHhc-------CCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            11111 23555544432221       25789999999642         22446778888999999998874

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.60  E-value=0.012  Score=48.93  Aligned_cols=52  Identities=21%  Similarity=0.219  Sum_probs=40.0

Q ss_pred             EEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-------------cc----hHHHHHHHHhcccCCeEEEEec
Q 022597          189 KIKHGLAADSLKALILNGEASSYDFAFVDAEK-------------RM----YQEYFELLLQLIRVGGIIVIDN  244 (294)
Q Consensus       189 ~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-------------~~----~~~~~~~~~~lLkpgG~ivid~  244 (294)
                      ++++||..+.++.+.    ++++|+||.|++-             ..    +.+.++.+.+.|+|||.+++..
T Consensus         6 ~i~~gDcle~l~~lp----d~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~   74 (256)
T d1g60a_           6 KIHQMNCFDFLDQVE----NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (256)
T ss_dssp             SEEECCHHHHHHHSC----TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhCc----CCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence            588999999999874    6789999999861             11    2345667788999999987653

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.31  E-value=0.019  Score=49.26  Aligned_cols=88  Identities=20%  Similarity=0.170  Sum_probs=52.3

Q ss_pred             ccCCC--cHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEc
Q 022597          141 LSLFS--GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD  217 (294)
Q Consensus       141 ~~~~a--G~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD  217 (294)
                      +||||  |..++.+..+   +. .+.++|+++...+..+.|+     .  -++..+|..+.-..-     -...|+++..
T Consensus         4 ~~lF~G~Gg~~~gl~~a---G~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~-----~~~~dll~~g   68 (324)
T d1dcta_           4 ISLFSGAGGLDLGFQKA---GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDE-----FPKCDGIIGG   68 (324)
T ss_dssp             EEESCSSCHHHHHHHHH---TCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGG-----SCCCSEEEEC
T ss_pred             EEeCcCcCHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhH-----cccccEEeec
Confidence            34444  4444445444   33 4569999999887776664     2  256778887653221     2568999876


Q ss_pred             CC--------c----cc-----hHHHHHHHHhcccCCeEEEEecc
Q 022597          218 AE--------K----RM-----YQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       218 ~~--------~----~~-----~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ++        +    .+     +.++++ +...++|. ++++.||
T Consensus        69 ~PCq~fS~ag~~~g~~d~r~~l~~~~~~-~i~~~~Pk-~~~lENV  111 (324)
T d1dcta_          69 PPCQSWSEGGSLRGIDDPRGKLFYEYIR-ILKQKKPI-FFLAENV  111 (324)
T ss_dssp             CCCTTTSSSSCCCCSSSHHHHHHHHHHH-HHHHHCCS-EEEEEEE
T ss_pred             ccccccccccccccccccccchHHHHHH-HHHhhCCc-eeecccc
Confidence            44        0    11     223333 34567885 7888998

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=94.19  E-value=0.096  Score=45.15  Aligned_cols=93  Identities=16%  Similarity=0.207  Sum_probs=57.3

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS  198 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~  198 (294)
                      +.+|||+-||.               |..++.+..+   +. .+.++|.++..++..+.|+...        .++|..+.
T Consensus        11 ~lrv~~lFsG~---------------Gg~~~gl~~a---G~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~   64 (327)
T d2c7pa1          11 GLRFIDLFAGL---------------GGFRLALESC---GAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQV   64 (327)
T ss_dssp             TCEEEEETCTT---------------THHHHHHHHT---TCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGS
T ss_pred             CCeEEEECccc---------------cHHHHHHHHC---CCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcC
Confidence            34677777766               6555555443   33 4578999999999888887421        24676654


Q ss_pred             HHHHhhcCCCCceeEEEEcCC--------c---------cchHHHHHHHHhcccCCeEEEEecc
Q 022597          199 LKALILNGEASSYDFAFVDAE--------K---------RMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~--------~---------~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      -..-     -..+|+++..++        +         ..+.++++. .+.++|. ++++.||
T Consensus        65 ~~~~-----~~~~Dll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~-i~~~kP~-~~~lENV  121 (327)
T d2c7pa1          65 NEKT-----IPDHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARI-VREKKPK-VVFMENV  121 (327)
T ss_dssp             CGGG-----SCCCSEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHH-HHHHCCS-EEEEEEE
T ss_pred             chhh-----cceeeeeecccccchhhhhhhhcCCcccchhHHHHHHHH-HhccCCc-EEecccc
Confidence            3221     356899976543        1         113444433 3567785 7888988

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.46  Score=40.00  Aligned_cols=86  Identities=16%  Similarity=0.164  Sum_probs=62.4

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ++++.+|=.|++.               | .+.++++.+ ..+.+|+.++.+++.++.+.+.++..+...++..+..|..
T Consensus         8 lk~Kv~lITGas~---------------G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls   71 (257)
T d1xg5a_           8 WRDRLALVTGASG---------------G-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS   71 (257)
T ss_dssp             GTTCEEEEESTTS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTT
T ss_pred             CCCCEEEEeCCCC---------------H-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCC
Confidence            5678999999876               4 455666655 3478999999999999999999998888778888888875


Q ss_pred             hh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          197 DS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       197 ~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      +.  ++.+.+.-  ..+.+|.++..++
T Consensus        72 ~~~~v~~~v~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          72 NEEDILSMFSAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            42  22221110  1367999887654

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.77  E-value=0.019  Score=49.12  Aligned_cols=53  Identities=11%  Similarity=0.219  Sum_probs=41.4

Q ss_pred             cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc-------------cc----hHHHHHHHHhcccCCeEEEEe
Q 022597          187 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-------------RM----YQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       187 ~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~-------------~~----~~~~~~~~~~lLkpgG~ivid  243 (294)
                      .-++++||..+.++.+.    ++++|+|+.|++-             .+    ..+.+..+.++|+|+|.++++
T Consensus        12 ~~~l~~GD~le~l~~l~----~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          12 NGSMYIGDSLELLESFP----EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             SEEEEESCHHHHGGGSC----SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEehhHHHHHhhCc----cCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            45899999999888763    6899999999861             11    234567778899999999875

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=93.69  E-value=0.088  Score=45.93  Aligned_cols=90  Identities=20%  Similarity=0.240  Sum_probs=66.2

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccc
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRM  222 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~  222 (294)
                      |.-.+ ++..+++.-+++.+|++|+-.+..++++.   -..++++.+.|..+.+..+...  .+.=-+|++|++   +.+
T Consensus        92 GSP~i-a~~llR~~Drl~l~ELHp~e~~~L~~~~~---~~~~~~v~~~DG~~~l~allPP--~~rRgLVLIDPpYE~k~e  165 (271)
T d2oo3a1          92 GSPYF-AINQLRSQDRLYLCELHPTEYNFLLKLPH---FNKKVYVNHTDGVSKLNALLPP--PEKRGLIFIDPSYERKEE  165 (271)
T ss_dssp             CHHHH-HHHHSCTTSEEEEECCSHHHHHHHTTSCC---TTSCEEEECSCHHHHHHHHCSC--TTSCEEEEECCCCCSTTH
T ss_pred             CCHHH-HHHhCCCCCceEEeecCHHHHHHHHHHhc---cCCCceEEcCchHHHHHhhCCC--CCCceEEEecCCcCCHHH
Confidence            64444 44556778899999999998887776654   3468999999999988887533  345569999987   667


Q ss_pred             hHHHHHHHHhccc--CCeEEE
Q 022597          223 YQEYFELLLQLIR--VGGIIV  241 (294)
Q Consensus       223 ~~~~~~~~~~lLk--pgG~iv  241 (294)
                      |....+.+...++  |.|+++
T Consensus       166 y~~v~~~l~~a~kr~~~g~~~  186 (271)
T d2oo3a1         166 YKEIPYAIKNAYSKFSTGLYC  186 (271)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHHHHHhCCCceEE
Confidence            8887777766555  556654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.55  E-value=0.025  Score=47.56  Aligned_cols=52  Identities=17%  Similarity=0.135  Sum_probs=40.5

Q ss_pred             EEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc----------cch----HHHHHHHHhcccCCeEEEEe
Q 022597          188 VKIKHGLAADSLKALILNGEASSYDFAFVDAEK----------RMY----QEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       188 v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~----------~~~----~~~~~~~~~lLkpgG~ivid  243 (294)
                      -.++.||..+.++.+.    ++++|+||.|++-          ..|    ...++.+.+.|+|||.+++.
T Consensus         5 ~~~~~~D~le~l~~l~----d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           5 HVYDVCDCLDTLAKLP----DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEEECCHHHHHHTSC----TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEechHHHHHhhCc----CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            4577899999988773    6899999999871          224    45566778999999999874

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.44  E-value=0.12  Score=40.40  Aligned_cols=96  Identities=14%  Similarity=0.134  Sum_probs=61.5

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHh--CCCCcEE----EEEc
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA--GVSHKVK----IKHG  193 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~--gl~~~v~----~~~g  193 (294)
                      +++-=||+                 |..+..++..+. .+..|+.+|.+++.++..++.-...  .......    ....
T Consensus         2 k~iaIiGa-----------------G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (184)
T d1bg6a2           2 KTYAVLGL-----------------GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTS   64 (184)
T ss_dssp             CEEEEECC-----------------SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEES
T ss_pred             CEEEEECc-----------------cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhh
Confidence            46777888                 555555555543 2579999999998877655432110  0000111    1122


Q ss_pred             chhhhHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          194 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       194 da~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                      |..+.   +      ...|+||+-.+.......++.+.+.|+++.++++
T Consensus        65 ~~~e~---~------~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          65 DIGLA---V------KDADVILIVVPAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             CHHHH---H------TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             hhHhH---h------cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEE
Confidence            22222   2      5689999988877788999999999999987764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.25  E-value=0.31  Score=36.59  Aligned_cols=85  Identities=15%  Similarity=0.093  Sum_probs=53.5

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh--HHHHhhcCCCCceeEEEEcCCccc
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAEKRM  222 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~--l~~l~~~~~~~~fD~vfiD~~~~~  222 (294)
                      |..|..+++.+. .+..|+.+|.|++.++.+++.   .    .+.+++||+.+.  +...    .-...|.++.-.+...
T Consensus         9 G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~----~~~vi~Gd~~~~~~l~~~----~i~~a~~vv~~t~~d~   77 (132)
T d1lssa_           9 GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDA----GIEDADMYIAVTGKEE   77 (132)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHT----TTTTCSEEEECCSCHH
T ss_pred             CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h----hhhhccCcccchhhhhhc----ChhhhhhhcccCCcHH
Confidence            777888887764 357899999999988765442   1    257889998753  3332    1367888776544332


Q ss_pred             hHHHHHHHHhcccCCeEEE
Q 022597          223 YQEYFELLLQLIRVGGIIV  241 (294)
Q Consensus       223 ~~~~~~~~~~lLkpgG~iv  241 (294)
                      -.-+.....+.+.+.-+++
T Consensus        78 ~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          78 VNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHHcCCceEEE
Confidence            2223334445667765553

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=93.08  E-value=0.05  Score=46.90  Aligned_cols=80  Identities=13%  Similarity=0.104  Sum_probs=59.2

Q ss_pred             EEEEEeCChHHHHHH---HHHHHHhCCCCcEEEEEcchhhhHH--HHhhcCCCCceeEEEEcCCc------------cch
Q 022597          161 CLVACERDARSLEVA---KKYYERAGVSHKVKIKHGLAADSLK--ALILNGEASSYDFAFVDAEK------------RMY  223 (294)
Q Consensus       161 ~v~~id~~~~~~~~A---~~~~~~~gl~~~v~~~~gda~~~l~--~l~~~~~~~~fD~vfiD~~~------------~~~  223 (294)
                      .+++.|.+++.++.|   +++++.+|+.+.+++...|..+..+  ...   ....+++|+.+++-            +.|
T Consensus       116 ~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~---~~~~~GlIVtNPPYGERl~~~~~~~~~~~  192 (249)
T d1o9ga_         116 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVL---AGSAPDVVLTDLPYGERTHWEGQVPGQPV  192 (249)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH---TTCCCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred             CccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhcc---CCCCCCEEEeCCCccccccccccchHHHH
Confidence            568999999999988   5699999999999999999865332  221   14567999998761            236


Q ss_pred             HHHHHHHHhcccCCeEEEEe
Q 022597          224 QEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       224 ~~~~~~~~~lLkpgG~ivid  243 (294)
                      .+++..+.+.+....++++.
T Consensus       193 ~~~~~~l~~~~p~~s~~~it  212 (249)
T d1o9ga_         193 AGLLRSLASALPAHAVIAVT  212 (249)
T ss_dssp             HHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHccCCCCcEEEEe
Confidence            77777777878766666654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.61  E-value=0.082  Score=43.55  Aligned_cols=110  Identities=19%  Similarity=0.163  Sum_probs=65.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhC-C--CC--cE----
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG-V--SH--KV----  188 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~g-l--~~--~v----  188 (294)
                      .+|.+|+-||+|.+              |..++..|..+  ++.|+.+|.+++.++..++...+.- +  ..  ..    
T Consensus        27 V~pa~VvViGaGva--------------G~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~   90 (183)
T d1l7da1          27 VPPARVLVFGVGVA--------------GLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAG   90 (183)
T ss_dssp             ECCCEEEEECCSHH--------------HHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC------------
T ss_pred             cCCcEEEEEcCcHH--------------HHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccc
Confidence            45679999999984              88889999888  5899999999998877766532110 0  00  00    


Q ss_pred             --------EEEEcchhhhHHHHhhcCCCCceeEEEEcCC---ccchHHHHHHHHhcccCCeEEEEecccCCC
Q 022597          189 --------KIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG  249 (294)
Q Consensus       189 --------~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~---~~~~~~~~~~~~~lLkpgG~ivid~vl~~g  249 (294)
                              ++... ..+.+.+.     -...|+|+--+-   ++...-.-+.+.+.+|||.+||==.+-..|
T Consensus        91 gyA~~~s~~~~~~-~~~~l~~~-----l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGG  156 (183)
T d1l7da1          91 GYAKEMGEEFRKK-QAEAVLKE-----LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGG  156 (183)
T ss_dssp             -----------CC-HHHHHHHH-----HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTC
T ss_pred             cchhhcCHHHHHH-HHHHHHHH-----HHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCC
Confidence                    01101 11222221     146899986532   222222334578899999988633333334

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.28  E-value=0.053  Score=44.01  Aligned_cols=100  Identities=12%  Similarity=0.146  Sum_probs=62.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      .++++||=.|.+.|-             |..++.+++..  +++|+++..+++..+.++    +.|...-+.. ..+..+
T Consensus        30 ~~g~~VLI~gaaGGV-------------G~~aiQlak~~--Ga~Viat~~s~~k~~~~~----~lGa~~vi~~-~~~~~~   89 (176)
T d1xa0a2          30 PERGPVLVTGATGGV-------------GSLAVSMLAKR--GYTVEASTGKAAEHDYLR----VLGAKEVLAR-EDVMAE   89 (176)
T ss_dssp             GGGCCEEESSTTSHH-------------HHHHHHHHHHT--TCCEEEEESCTTCHHHHH----HTTCSEEEEC-C-----
T ss_pred             CCCCEEEEEeccchH-------------HHHHHHHHHHc--CCceEEecCchHHHHHHH----hcccceeeec-chhHHH
Confidence            345689998865411             55666677776  689999999988876665    4565432221 111111


Q ss_pred             hHHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEecc
Q 022597          198 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       198 ~l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      ...    ....+.+|.||-..+..    +++...+.|++||.++.-..
T Consensus        90 ~~~----~~~~~gvD~vid~vgg~----~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2          90 RIR----PLDKQRWAAAVDPVGGR----TLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             --------CCSCCEEEEEECSTTT----THHHHHHTEEEEEEEEECSC
T ss_pred             HHH----HhhccCcCEEEEcCCch----hHHHHHHHhCCCceEEEeec
Confidence            111    11256899888766533    46678899999999987544

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=92.24  E-value=0.19  Score=45.76  Aligned_cols=52  Identities=15%  Similarity=0.103  Sum_probs=44.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCC-CcEEEEEeCChHHHHHHHHHHHHhCC
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGV  184 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~-~~~v~~id~~~~~~~~A~~~~~~~gl  184 (294)
                      .+...++|||+..               |..+..++...+. ..+|+++|+++...+..+++++.++.
T Consensus       211 ~kn~vfIDVGAni---------------G~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         211 SDSEKMVDCGASI---------------GESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CSSCEEEEETCTT---------------SHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCcCC---------------CHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            4556999999999               9999988877653 47999999999999999999987654

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.50  E-value=0.76  Score=34.15  Aligned_cols=86  Identities=15%  Similarity=0.037  Sum_probs=56.1

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCccchHH
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE  225 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~~~~~  225 (294)
                      |-.+..+++.+. +..++.+|.+++..+.++    ..    .+.++.||+.+. ..|..-+ -++.+.+++..+......
T Consensus         9 g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~----~~----~~~~i~Gd~~~~-~~L~~a~-i~~A~~vi~~~~~d~~n~   77 (129)
T d2fy8a1           9 SESTLECLRELR-GSEVFVLAEDENVRKKVL----RS----GANFVHGDPTRV-SDLEKAN-VRGARAVIVNLESDSETI   77 (129)
T ss_dssp             CHHHHHHHHTSC-GGGEEEEESCTTHHHHHH----HT----TCEEEESCTTSH-HHHHHTT-CTTCSEEEECCSSHHHHH
T ss_pred             CHHHHHHHHHHc-CCCCEEEEcchHHHHHHH----hc----CccccccccCCH-HHHHHhh-hhcCcEEEEeccchhhhH
Confidence            778899999886 556889999999876543    22    368889998653 2222222 467888888765443333


Q ss_pred             HHHHHHhcccCCeEEEE
Q 022597          226 YFELLLQLIRVGGIIVI  242 (294)
Q Consensus       226 ~~~~~~~lLkpgG~ivi  242 (294)
                      ..-...+.+.|...++.
T Consensus        78 ~~~~~~r~~~~~~~iia   94 (129)
T d2fy8a1          78 HCILGIRKIDESVRIIA   94 (129)
T ss_dssp             HHHHHHHHHCSSSCEEE
T ss_pred             HHHHHHHHHCCCceEEE
Confidence            34444566778765554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=90.35  E-value=0.17  Score=40.36  Aligned_cols=99  Identities=13%  Similarity=0.122  Sum_probs=63.7

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhH
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL  199 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l  199 (294)
                      .+.||--|...|.             |..++.+|+.+  +++|+++..+++..+.+    ++.|.+.   ++  +..+..
T Consensus        24 ~~~VLV~gaaGgV-------------G~~avQlAk~~--Ga~Viat~~s~~k~~~~----~~lGad~---vi--~~~~~~   79 (167)
T d1tt7a2          24 KGSVLVTGATGGV-------------GGIAVSMLNKR--GYDVVASTGNREAADYL----KQLGASE---VI--SREDVY   79 (167)
T ss_dssp             GCCEEEESTTSHH-------------HHHHHHHHHHH--TCCEEEEESSSSTHHHH----HHHTCSE---EE--EHHHHC
T ss_pred             CCEEEEeCCcchH-------------HHHHHHHHHHc--CCceEEEecCHHHHHHH----Hhhcccc---eE--eccchh
Confidence            4468877754322             77788888887  58999999998876655    4556543   22  122221


Q ss_pred             HHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEEeccc
Q 022597          200 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL  246 (294)
Q Consensus       200 ~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivid~vl  246 (294)
                      .+.......+.+|.||-....    +.++...+.|+++|.++.-...
T Consensus        80 ~~~~~~~~~~gvd~vid~vgg----~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          80 DGTLKALSKQQWQGAVDPVGG----KQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             SSCCCSSCCCCEEEEEESCCT----HHHHHHHTTEEEEEEEEECCCS
T ss_pred             chhhhcccCCCceEEEecCcH----HHHHHHHHHhccCceEEEeecc
Confidence            111111124679998876653    3567789999999999986543

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.42  Score=40.78  Aligned_cols=64  Identities=13%  Similarity=0.057  Sum_probs=37.7

Q ss_pred             cHHHHHHHHHCCCCc-EEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCC
Q 022597          146 GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       146 G~~sl~la~~~~~~~-~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                      |..++.+..+- -+. .+.++|+++..++..+.++.      ...++.+|..+....-..   ...+|+++..++
T Consensus        13 Gg~~~gl~~aG-~~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~---~~~~Dll~ggpP   77 (343)
T d1g55a_          13 GGMHHALRESC-IPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFD---RLSFDMILMSPP   77 (343)
T ss_dssp             CHHHHHHHHHT-CSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHH---HHCCSEEEECCC
T ss_pred             cHHHHHHHHcC-CCCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcC---CCCccEEEeecc
Confidence            55555554441 122 36799999998887776642      245666777665332211   236899876544

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=1.1  Score=37.56  Aligned_cols=93  Identities=23%  Similarity=0.158  Sum_probs=61.4

Q ss_pred             cHHHHHHHHHCC--CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh--HH----HHhhcCCCCceeEEEEc
Q 022597          146 GYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LK----ALILNGEASSYDFAFVD  217 (294)
Q Consensus       146 G~~sl~la~~~~--~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~--l~----~l~~~~~~~~fD~vfiD  217 (294)
                      +..+..+++.+-  .+.+|+.++++++..+.+.+.++..|.  ++.++..|..+.  ++    ...+.  .+.+|+++.+
T Consensus        13 ~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~--~g~iDiLVnN   88 (275)
T d1wmaa1          13 KGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE--YGGLDVLVNN   88 (275)
T ss_dssp             SHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH--HSSEEEEEEC
T ss_pred             CHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh--cCCcEEEEEc
Confidence            345566665542  267999999999999999998888764  578888887542  22    22221  3689999987


Q ss_pred             CCc-------c----ch-----------HHHHHHHHhcccCCeEEEE
Q 022597          218 AEK-------R----MY-----------QEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       218 ~~~-------~----~~-----------~~~~~~~~~lLkpgG~ivi  242 (294)
                      ++.       .    .+           ....+.+.++|+++|.|+.
T Consensus        89 AGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivn  135 (275)
T d1wmaa1          89 AGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVN  135 (275)
T ss_dssp             CCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            651       0    11           1233444688888888765

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=1.6  Score=35.05  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=59.7

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHh-------CCCC------
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERA-------GVSH------  186 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~-------gl~~------  186 (294)
                      ++|--||+|+                 .|..+|..+ ..+..|+.+|.+++.++.+++.+++.       +...      
T Consensus         5 kkvaViGaG~-----------------mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~   67 (192)
T d1f0ya2           5 KHVTVIGGGL-----------------MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGD   67 (192)
T ss_dssp             CEEEEECCSH-----------------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred             EEEEEECcCH-----------------HHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhH
Confidence            4788899965                 333333322 13689999999999999888877642       2211      


Q ss_pred             --------cEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCCeEEEEe
Q 022597          187 --------KVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIVID  243 (294)
Q Consensus       187 --------~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpgG~ivid  243 (294)
                              ++.+. .|..   ..      -...|+|+.-...  +--.+.|..+.+.++++.++.-.
T Consensus        68 ~~~~~~l~~i~~~-~d~~---~a------~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasn  124 (192)
T d1f0ya2          68 EFVEKTLSTIATS-TDAA---SV------VHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASN  124 (192)
T ss_dssp             HHHHHHHHTEEEE-SCHH---HH------TTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEEC
T ss_pred             HHHHHHHhhcccc-chhH---hh------hcccceehhhcccchhHHHHHHHHHhhhcccCceeecc
Confidence                    22222 1111   11      2567999886642  23467888888888888766543

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.67  E-value=3.3  Score=33.99  Aligned_cols=63  Identities=19%  Similarity=0.214  Sum_probs=45.4

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC----CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcc
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL----PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL  194 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~----~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gd  194 (294)
                      .++.+|=.|++.               | .+.++++.+    ..+.+|+.++++++.++.+.+.++..+...++.++..|
T Consensus         5 ~gKvalITGas~---------------G-IG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~D   68 (259)
T d1oaaa_           5 GCAVCVLTGASR---------------G-FGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD   68 (259)
T ss_dssp             BSEEEEESSCSS---------------H-HHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECC
T ss_pred             CCCEEEEeCCCC---------------H-HHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEcc
Confidence            455667668766               4 455665544    35789999999999998888888776666677777777


Q ss_pred             hhh
Q 022597          195 AAD  197 (294)
Q Consensus       195 a~~  197 (294)
                      ..+
T Consensus        69 vs~   71 (259)
T d1oaaa_          69 LGT   71 (259)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            653

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.58  E-value=2.7  Score=33.04  Aligned_cols=31  Identities=13%  Similarity=0.274  Sum_probs=25.5

Q ss_pred             cHHHHHHHHHCCCCcEEEEEeCChHHHHHHH
Q 022597          146 GYSSLAIALVLPESGCLVACERDARSLEVAK  176 (294)
Q Consensus       146 G~~sl~la~~~~~~~~v~~id~~~~~~~~A~  176 (294)
                      |+.++.+|..+..+.+|+++|+|++.++..+
T Consensus         9 G~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           9 GYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             SHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             ChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            8888888777766789999999999876554

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=87.55  E-value=1.8  Score=36.08  Aligned_cols=86  Identities=19%  Similarity=0.139  Sum_probs=59.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.++.+|=.|.+.               | .+.++++.+ ..+++|+.++++++.++.+.+.+...+...++..+..|..
T Consensus         2 l~gK~alITGas~---------------G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt   65 (258)
T d1iy8a_           2 FTDRVVLITGGGS---------------G-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS   65 (258)
T ss_dssp             CTTCEEEEETTTS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTT
T ss_pred             CCCCEEEEeCCCC---------------H-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCC
Confidence            3567888889876               4 455555554 3478999999999999888888877776667888888865


Q ss_pred             hh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          197 DS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       197 ~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      +.  ++.+...-  ..++.|.++.+++
T Consensus        66 ~~~~v~~~~~~~~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          66 DEAQVEAYVTATTERFGRIDGFFNNAG   92 (258)
T ss_dssp             SHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence            42  22221110  1367999887653

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=87.39  E-value=2.9  Score=35.98  Aligned_cols=108  Identities=18%  Similarity=0.188  Sum_probs=69.5

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEEeCChHHHHHHHHHHHHhCCC--CcEEEEEcchh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAA  196 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~id~~~~~~~~A~~~~~~~gl~--~~v~~~~gda~  196 (294)
                      +.+.|+.+||                 |.-|...-...+++.+++=+|. |+.++.-++.+++.|..  .+.+++..|..
T Consensus        89 g~~qvV~LGa-----------------GlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~  150 (297)
T d2uyoa1          89 GIRQFVILAS-----------------GLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLR  150 (297)
T ss_dssp             TCCEEEEETC-----------------TTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTT
T ss_pred             CCCeEEEeCc-----------------ccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEeccccc
Confidence            4556777999                 5555554333344567777774 88888888888887653  45677777766


Q ss_pred             hh-HHHHhhcC-CCCceeEEEEcCC------ccchHHHHHHHHhcccCCeEEEEecc
Q 022597          197 DS-LKALILNG-EASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV  245 (294)
Q Consensus       197 ~~-l~~l~~~~-~~~~fD~vfiD~~------~~~~~~~~~~~~~lLkpgG~ivid~v  245 (294)
                      +. ...+...+ ..+.. .+|+--+      .+....+++.+..+..||+.|++|-+
T Consensus       151 ~~~~~~L~~~g~d~~~p-tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         151 QDWPPALRSAGFDPSAR-TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             SCHHHHHHHTTCCTTSC-EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             chHHHHHHhcCCCCCCC-EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            53 34454433 11222 3333322      45567888888899999999999865

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.27  E-value=2  Score=34.32  Aligned_cols=95  Identities=8%  Similarity=0.116  Sum_probs=51.1

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHH------------HHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCcee
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAK------------KYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD  212 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~------------~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD  212 (294)
                      |+.|+.+|..+. .+-+|+++|.|++.++..+            +.+.+.....+..+ ..|..+.+         ...|
T Consensus         9 G~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~-~~~~~~~i---------~~~d   78 (202)
T d1mv8a2           9 GYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG-TTDFKKAV---------LDSD   78 (202)
T ss_dssp             STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH---------HTCS
T ss_pred             CHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhccccccc-CCCHHHHH---------hhCC
Confidence            566666555553 3579999999998776543            11221111122222 22332222         2467


Q ss_pred             EEEEcCCc----------cchHHHHHHHH---hcccCCeEEEEecccCCCc
Q 022597          213 FAFVDAEK----------RMYQEYFELLL---QLIRVGGIIVIDNVLWHGK  250 (294)
Q Consensus       213 ~vfiD~~~----------~~~~~~~~~~~---~lLkpgG~ivid~vl~~g~  250 (294)
                      ++|+..+-          .......+.+.   +.+.++..+++......|.
T Consensus        79 ~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGt  129 (202)
T d1mv8a2          79 VSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (202)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             EEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcc
Confidence            77776441          11233444443   4556888999887776665

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.93  E-value=1.5  Score=36.38  Aligned_cols=85  Identities=14%  Similarity=0.060  Sum_probs=58.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      +++.+|=.|++.               | .+.++++.+ ..+++|+.++++++.++.+.+.+....-..++.++..|..+
T Consensus         2 ~GKvalITGas~---------------G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~   65 (254)
T d2gdza1           2 NGKVALVTGAAQ---------------G-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD   65 (254)
T ss_dssp             TTCEEEEETTTS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS
T ss_pred             CCCEEEEeCCCC---------------H-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC
Confidence            467888889865               4 566666665 35789999999999988877777654444578888888754


Q ss_pred             h--HHHHhhcC--CCCceeEEEEcCC
Q 022597          198 S--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       198 ~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .  ++.+.+.-  ..++.|.++..++
T Consensus        66 ~~~v~~~~~~~~~~~G~iDilVnnAg   91 (254)
T d2gdza1          66 QQQLRDTFRKVVDHFGRLDILVNNAG   91 (254)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCcCeeccccc
Confidence            2  22221110  1368999988765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=86.85  E-value=1.1  Score=33.01  Aligned_cols=85  Identities=13%  Similarity=0.050  Sum_probs=50.1

Q ss_pred             cHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh--hHHHHhhcCCCCceeEEEEcCCccc
Q 022597          146 GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASSYDFAFVDAEKRM  222 (294)
Q Consensus       146 G~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~--~l~~l~~~~~~~~fD~vfiD~~~~~  222 (294)
                      |..+..+++.+. .+..|+.+|.|++.++.++    ..|    ..++.||+.+  .+....    -...|.+++-.+...
T Consensus         9 G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~----~~~----~~~~~gd~~~~~~l~~a~----i~~a~~vi~~~~~~~   76 (134)
T d2hmva1           9 GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SYA----THAVIANATEENELLSLG----IRNFEYVIVAIGANI   76 (134)
T ss_dssp             SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTT----TTC----SEEEECCTTCTTHHHHHT----GGGCSEEEECCCSCH
T ss_pred             CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHH----HhC----CcceeeecccchhhhccC----CccccEEEEEcCchH
Confidence            667777777663 3678999999999877653    222    3566788765  333321    356888887765433


Q ss_pred             hHHHHHHHHhcccCCeEEEE
Q 022597          223 YQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       223 ~~~~~~~~~~lLkpgG~ivi  242 (294)
                      -...+-.....+.+...++.
T Consensus        77 ~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          77 QASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             HHHHHHHHHHHHTTCSEEEE
T ss_pred             HhHHHHHHHHHHcCCCcEEe
Confidence            33333333333444445543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=86.40  E-value=2.2  Score=32.32  Aligned_cols=97  Identities=12%  Similarity=0.059  Sum_probs=59.9

Q ss_pred             CeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhh-
Q 022597          121 QRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-  198 (294)
Q Consensus       121 ~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~-  198 (294)
                      .+++=+|+                 |-.+..+++.+. .+..++.+|.+++......+...    ...+.++.||+.+. 
T Consensus         4 nHiII~G~-----------------g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~----~~~~~vi~Gd~~d~~   62 (153)
T d1id1a_           4 DHFIVCGH-----------------SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL----GDNADVIPGDSNDSS   62 (153)
T ss_dssp             SCEEEECC-----------------SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH----CTTCEEEESCTTSHH
T ss_pred             CEEEEECC-----------------CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh----cCCcEEEEccCcchH
Confidence            37888888                 556666666653 35789999999976443333332    23588999998663 


Q ss_pred             -HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          199 -LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 -l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                       ++..   + -+..|.+++-.+.....-..-...+.+.|+..+++
T Consensus        63 ~L~~a---~-i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia  103 (153)
T d1id1a_          63 VLKKA---G-IDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             HHHHH---T-TTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             HHHHh---c-cccCCEEEEccccHHHHHHHHHHHHHhCCCCceEE
Confidence             3332   1 46788888876543333333334456677765655

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.20  E-value=1.5  Score=34.68  Aligned_cols=78  Identities=17%  Similarity=0.205  Sum_probs=51.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      +.++++|=.|..                |..+..+++.+ ..+++|+.++++++..+.+.+.+....-   +.+...|..
T Consensus        21 l~gK~vlItGas----------------gGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~d~~   81 (191)
T d1luaa1          21 VKGKKAVVLAGT----------------GPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFK---VNVTAAETA   81 (191)
T ss_dssp             CTTCEEEEETTT----------------SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHT---CCCEEEECC
T ss_pred             CCCCEEEEECCC----------------HHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccc---hhhhhhhcc
Confidence            467899999975                44555555554 3478999999999998877777765432   233333332


Q ss_pred             --hhHHHHhhcCCCCceeEEEEcCC
Q 022597          197 --DSLKALILNGEASSYDFAFVDAE  219 (294)
Q Consensus       197 --~~l~~l~~~~~~~~fD~vfiD~~  219 (294)
                        +.+++.     -+..|++|..++
T Consensus        82 ~~~~~~~~-----~~~iDilin~Ag  101 (191)
T d1luaa1          82 DDASRAEA-----VKGAHFVFTAGA  101 (191)
T ss_dssp             SHHHHHHH-----TTTCSEEEECCC
T ss_pred             cHHHHHHH-----hcCcCeeeecCc
Confidence              334444     367899987754

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.68  E-value=2  Score=36.06  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=59.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCC-CcEEEEEcch
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~~~gda  195 (294)
                      +.++++|=.|++.               | .+.++++.+ ..+++|+.++++++.++.+.+.++..|.. .++..+.+|.
T Consensus         2 L~gK~alITGas~---------------G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv   65 (274)
T d1xhla_           2 FSGKSVIITGSSN---------------G-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADV   65 (274)
T ss_dssp             CTTCEEEETTCSS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCT
T ss_pred             CCCCEEEEeCCCc---------------H-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeC
Confidence            3567888888875               4 556666655 34789999999999999998888887754 5789999986


Q ss_pred             hhh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          196 ADS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       196 ~~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .+.  ++.+.+.-  ..++.|.++..++
T Consensus        66 ~~~~~v~~~~~~~~~~~G~iDilVnnAG   93 (274)
T d1xhla_          66 TEASGQDDIINTTLAKFGKIDILVNNAG   93 (274)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCceEEEeecc
Confidence            542  22221110  1368999987643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.14  E-value=5.5  Score=32.74  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=58.2

Q ss_pred             CCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhh
Q 022597          119 GAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD  197 (294)
Q Consensus       119 ~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~  197 (294)
                      ..+.+|=.|.+.               | .+.++++.+. .+++|+.++++++.++.+.+.++..|.  ++..+..|..+
T Consensus         9 enKvalITGas~---------------G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~   70 (251)
T d2c07a1           9 ENKVALVTGAGR---------------G-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSK   70 (251)
T ss_dssp             SSCEEEEESTTS---------------H-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTC
T ss_pred             CCCEEEEeCCCC---------------H-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCC
Confidence            467888888765               4 6677777764 468999999999999988888887654  58888888764


Q ss_pred             h--HHHHhhc--CCCCceeEEEEcCC
Q 022597          198 S--LKALILN--GEASSYDFAFVDAE  219 (294)
Q Consensus       198 ~--l~~l~~~--~~~~~fD~vfiD~~  219 (294)
                      .  +..+.+.  ...+..|.++..++
T Consensus        71 ~~~v~~~~~~~~~~~g~iDilvnnag   96 (251)
T d2c07a1          71 KEEISEVINKILTEHKNVDILVNNAG   96 (251)
T ss_dssp             HHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhcCCceeeeeccc
Confidence            2  2222111  01478998887654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.31  E-value=6  Score=30.53  Aligned_cols=92  Identities=16%  Similarity=0.209  Sum_probs=51.2

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCCCCcEEEEE-eCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHH
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLPESGCLVAC-ERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK  200 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~~~~~v~~i-d~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~  200 (294)
                      ++-=||||.+              |..=+......+ +.+++++ |.+++..   ++..++.+..+..++ ..|..+.+.
T Consensus         3 ki~iIG~G~~--------------g~~~~~~l~~~~-~~~i~ai~d~~~~~~---~~~~~~~~~~~~~~~-~~~~~~ll~   63 (184)
T d1ydwa1           3 RIGVMGCADI--------------ARKVSRAIHLAP-NATISGVASRSLEKA---KAFATANNYPESTKI-HGSYESLLE   63 (184)
T ss_dssp             EEEEESCCTT--------------HHHHHHHHHHCT-TEEEEEEECSSHHHH---HHHHHHTTCCTTCEE-ESSHHHHHH
T ss_pred             EEEEEcCCHH--------------HHHHHHHHHhCC-CCEEEEEEeCCcccc---ccchhccccccceee-cCcHHHhhh
Confidence            5677899652              332222333333 6788864 8888754   444566666655554 345555543


Q ss_pred             HHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          201 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       201 ~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                             ....|+|++-.+...-.+   .+...|+.|=-+++
T Consensus        64 -------~~~iD~v~I~tp~~~h~~---~~~~~l~~g~~v~~   95 (184)
T d1ydwa1          64 -------DPEIDALYVPLPTSLHVE---WAIKAAEKGKHILL   95 (184)
T ss_dssp             -------CTTCCEEEECCCGGGHHH---HHHHHHTTTCEEEE
T ss_pred             -------ccccceeeecccchhhcc---hhhhhhhccceeec
Confidence                   457999998766433322   33344444444444

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=84.07  E-value=3.6  Score=29.86  Aligned_cols=78  Identities=13%  Similarity=0.085  Sum_probs=53.3

Q ss_pred             CcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCcc--chHHHHHHHHhcccC
Q 022597          159 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRV  236 (294)
Q Consensus       159 ~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~~--~~~~~~~~~~~lLkp  236 (294)
                      |.+|.-+|=++...+..+..+++.|+.  +.....+..+.+..+.    ..+||+|++|..-+  +=.+.++.+.+. .|
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~--v~~~a~~~~~al~~~~----~~~~dliilD~~mp~~~G~e~~~~ir~~-~~   73 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYE--VAGEATNGREAVEKYK----ELKPDIVTMDITMPEMNGIDAIKEIMKI-DP   73 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHH----HHCCSEEEEECSCGGGCHHHHHHHHHHH-CT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCc--eEEEECCHHHHHHHHH----hccCCEEEEecCCCCCCHHHHHHHHHHh-CC
Confidence            357889999999999999999998863  4434567777776654    35799999997633  334556665543 33


Q ss_pred             C-eEEEEe
Q 022597          237 G-GIIVID  243 (294)
Q Consensus       237 g-G~ivid  243 (294)
                      + -++++.
T Consensus        74 ~~pvi~ls   81 (118)
T d1u0sy_          74 NAKIIVCS   81 (118)
T ss_dssp             TCCEEEEE
T ss_pred             CCcEEEEE
Confidence            3 344443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=84.01  E-value=0.16  Score=38.99  Aligned_cols=91  Identities=9%  Similarity=-0.023  Sum_probs=55.9

Q ss_pred             eEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeCChHHHHHHHHHHHHhCCCCc--EEEEEcchhhh
Q 022597          122 RCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHK--VKIKHGLAADS  198 (294)
Q Consensus       122 ~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~~~~~~~~A~~~~~~~gl~~~--v~~~~gda~~~  198 (294)
                      +|.=||+|                 ..+..++..+. .+..|+.++.+++..+..    ...+....  ......+..  
T Consensus         2 kI~IiGaG-----------------~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~--   58 (167)
T d1ks9a2           2 KITVLGCG-----------------ALGQLWLTALCKQGHEVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDP--   58 (167)
T ss_dssp             EEEEECCS-----------------HHHHHHHHHHHHTTCEEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCH--
T ss_pred             EEEEECcC-----------------HHHHHHHHHHHHCCCceEEEEcCHHHhhhh----ccccCCccccccccccchh--
Confidence            67888995                 44444444442 256899999988633211    11121111  111222222  


Q ss_pred             HHHHhhcCCCCceeEEEEcCCccchHHHHHHHHhcccCCeEEEE
Q 022597          199 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI  242 (294)
Q Consensus       199 l~~l~~~~~~~~fD~vfiD~~~~~~~~~~~~~~~lLkpgG~ivi  242 (294)
                       ..      .+.+|+||+-.......+.++.+.+++.++..++.
T Consensus        59 -~~------~~~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          59 -DF------LATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             -HH------HHTCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             -hh------hcccceEEEeecccchHHHHHhhccccCcccEEee
Confidence             22      25799999998877888999999999999987664

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.85  E-value=1.8  Score=36.31  Aligned_cols=86  Identities=17%  Similarity=0.223  Sum_probs=59.7

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCC-CcEEEEEcch
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~~~gda  195 (294)
                      ++++++|=.|++.               | .+.++++.+ ..+++|+.++++++.++.+.+.+++.+.. .++..+..|.
T Consensus         3 L~gK~alVTGas~---------------G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dv   66 (272)
T d1xkqa_           3 FSNKTVIITGSSN---------------G-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADV   66 (272)
T ss_dssp             TTTCEEEETTCSS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCT
T ss_pred             CCCCEEEEeCcCc---------------H-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccC
Confidence            4677888888765               4 556666655 34789999999999999999988887654 4688899886


Q ss_pred             hh--hHHHHhhcC--CCCceeEEEEcCC
Q 022597          196 AD--SLKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       196 ~~--~l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .+  .++.+.+.-  ..+..|.++.+++
T Consensus        67 s~~~~v~~~~~~~~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          67 TTEDGQDQIINSTLKQFGKIDVLVNNAG   94 (272)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCceEEEeCCc
Confidence            54  222222110  1367999987643

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.42  E-value=2.4  Score=35.16  Aligned_cols=86  Identities=20%  Similarity=0.212  Sum_probs=58.9

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCC-CcEEEEEcch
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~-~~v~~~~gda  195 (294)
                      +++|.+|-.|++.               | .+.++++.+ ..+++|+.++++++.++.+.+.++..|.. .++.++..|.
T Consensus         3 l~gKvalVTGas~---------------G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dv   66 (264)
T d1spxa_           3 FAEKVAIITGSSN---------------G-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADV   66 (264)
T ss_dssp             TTTCEEEETTTTS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCT
T ss_pred             CCCCEEEEeCcCC---------------H-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccC
Confidence            4567888888865               4 556666655 34789999999999999888888887654 5689999887


Q ss_pred             hhh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          196 ADS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       196 ~~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .+.  ++.+.+.-  ..++.|.++..++
T Consensus        67 t~~~~v~~~~~~~~~~~g~iDilvnnAG   94 (264)
T d1spxa_          67 TTDAGQDEILSTTLGKFGKLDILVNNAG   94 (264)
T ss_dssp             TSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEeecccc
Confidence            532  22221110  1367898876643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=82.29  E-value=0.86  Score=33.45  Aligned_cols=49  Identities=20%  Similarity=0.208  Sum_probs=37.8

Q ss_pred             CCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeC--------ChHHHHHHHHHHHHhCCC
Q 022597          120 AQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACER--------DARSLEVAKKYYERAGVS  185 (294)
Q Consensus       120 ~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~--------~~~~~~~A~~~~~~~gl~  185 (294)
                      |++|+=||.                 |+.++.+|..+. .+.+|+.+|.        +++..+.+.+.+++.|+.
T Consensus        21 p~~vvIiGg-----------------G~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~   78 (116)
T d1gesa2          21 PERVAVVGA-----------------GYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQ   78 (116)
T ss_dssp             CSEEEEECC-----------------SHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEECC-----------------ChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCE
Confidence            579999999                 777887777663 3679999997        456677888888888753

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=82.26  E-value=4.1  Score=33.70  Aligned_cols=84  Identities=20%  Similarity=0.247  Sum_probs=57.7

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ++++++|=.|.+.               | .+.++++.+ ..+++|+.+|++++.++.+.+.++..|.  ++..+..|..
T Consensus         3 L~gK~alITGas~---------------G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~   64 (260)
T d1zema1           3 FNGKVCLVTGAGG---------------N-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKGV--EARSYVCDVT   64 (260)
T ss_dssp             TTTCEEEEETTTS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTT
T ss_pred             CCCCEEEEeCCCC---------------H-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCC
Confidence            4678899888865               4 456666655 3478999999999999988888887654  5888888865


Q ss_pred             hh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          197 DS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       197 ~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      +.  ++.+.+.-  ..+..|.++..++
T Consensus        65 ~~~~v~~~~~~~~~~~g~iDilVnnaG   91 (260)
T d1zema1          65 SEEAVIGTVDSVVRDFGKIDFLFNNAG   91 (260)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCeehhhhc
Confidence            32  22221110  1367999887643

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.74  E-value=8.4  Score=31.57  Aligned_cols=84  Identities=18%  Similarity=0.137  Sum_probs=54.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHH-HHhCCCCcEEEEEcch
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYY-ERAGVSHKVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~-~~~gl~~~v~~~~gda  195 (294)
                      ++++++|-.|.+.               | .+.++++.+ ..+++|+.++++++.++.+.+.+ +..|  .++..+..|.
T Consensus         3 l~gK~~lITGas~---------------G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv   64 (251)
T d1vl8a_           3 LRGRVALVTGGSR---------------G-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDV   64 (251)
T ss_dssp             CTTCEEEEETTTS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCT
T ss_pred             CCCCEEEEeCCCC---------------H-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccC
Confidence            3567899999875               4 556666655 34789999999998876665554 4445  3578888887


Q ss_pred             hhh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          196 ADS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       196 ~~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      .+.  ++.+.+.-  ..++.|.++..++
T Consensus        65 ~~~~~v~~~~~~~~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          65 SNYEEVKKLLEAVKEKFGKLDTVVNAAG   92 (251)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            542  22221110  1368999987654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.68  E-value=7.4  Score=31.89  Aligned_cols=84  Identities=14%  Similarity=0.071  Sum_probs=58.1

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ..++.+|=.|++.               | .+..++..+ ..+.+|+.++++++.++...+.++..|  .++..+..|..
T Consensus         5 l~Gkv~lITGas~---------------G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs   66 (244)
T d1yb1a_           5 VTGEIVLITGAGH---------------G-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCS   66 (244)
T ss_dssp             CTTCEEEEETTTS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTT
T ss_pred             CCCCEEEEeCCCc---------------H-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCC
Confidence            3567888889876               4 445655555 347899999999999988888888765  46888888876


Q ss_pred             hh--HHHHhhc--CCCCceeEEEEcCC
Q 022597          197 DS--LKALILN--GEASSYDFAFVDAE  219 (294)
Q Consensus       197 ~~--l~~l~~~--~~~~~fD~vfiD~~  219 (294)
                      +.  +..+.+.  ...+..|.++..++
T Consensus        67 ~~~~v~~~~~~i~~~~g~idilinnag   93 (244)
T d1yb1a_          67 NREDIYSSAKKVKAEIGDVSILVNNAG   93 (244)
T ss_dssp             CHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCceeEeecc
Confidence            53  2222110  01467999987754

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.63  E-value=6.2  Score=28.58  Aligned_cols=78  Identities=6%  Similarity=0.043  Sum_probs=53.8

Q ss_pred             cEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchhhhHHHHhhcCCCCceeEEEEcCCc--cchHHHHHHHHhcccCC
Q 022597          160 GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVG  237 (294)
Q Consensus       160 ~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~~~l~~l~~~~~~~~fD~vfiD~~~--~~~~~~~~~~~~lLkpg  237 (294)
                      -+|..||=++...+..++.++..|+.  +. ...+..+.+..+.    ..+||+|++|..-  .+-.++++.+.+.-..-
T Consensus         2 irILiVdDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~----~~~~dlillD~~mp~~~g~~~~~~lr~~~~~~   74 (122)
T d1kgsa2           2 VRVLVVEDERDLADLITEALKKEMFT--VD-VCYDGEEGMYMAL----NEPFDVVILDIMLPVHDGWEILKSMRESGVNT   74 (122)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH----HSCCSEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHCCCE--EE-EEcchHHHHHHHH----hhCccccccccccccchhHHHHHHHHhcCCCC
Confidence            47889999999999999999998874  44 4567777666654    4789999999652  23445566665432222


Q ss_pred             eEEEEec
Q 022597          238 GIIVIDN  244 (294)
Q Consensus       238 G~ivid~  244 (294)
                      -++++..
T Consensus        75 piI~lt~   81 (122)
T d1kgsa2          75 PVLMLTA   81 (122)
T ss_dssp             CEEEEES
T ss_pred             cEEEEcC
Confidence            3555543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.43  E-value=2.2  Score=31.33  Aligned_cols=52  Identities=17%  Similarity=0.215  Sum_probs=41.3

Q ss_pred             hhhCCCeEEEEccccccccccccccccCCCcHHHHHHHHHCC-CCcEEEEEeC--------ChHHHHHHHHHHHHhCC
Q 022597          116 QILGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVLP-ESGCLVACER--------DARSLEVAKKYYERAGV  184 (294)
Q Consensus       116 ~~~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~~-~~~~v~~id~--------~~~~~~~A~~~~~~~gl  184 (294)
                      ....+++|+=||.                 |+.++.+|..+. .+.+|+.++.        +++..+.+++.+++.|+
T Consensus        18 ~l~~p~~v~IiGg-----------------G~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV   78 (117)
T d1onfa2          18 NIKESKKIGIVGS-----------------GYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNI   78 (117)
T ss_dssp             TCCCCSEEEEECC-----------------SHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             ccCCCCEEEEECC-----------------chHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCC
Confidence            3445789999999                 888888888774 3689999997        56777888888888775

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.19  E-value=5.1  Score=33.04  Aligned_cols=84  Identities=15%  Similarity=0.089  Sum_probs=57.8

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ++++++|=.|.+.                ..+.++++.+ ..+++|+.++++++.++.+.+.++..|.  ++.++..|..
T Consensus         9 L~gK~alITGas~----------------GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs   70 (255)
T d1fmca_           9 LDGKCAIITGAGA----------------GIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDIT   70 (255)
T ss_dssp             CTTCEEEETTTTS----------------HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTT
T ss_pred             CCCCEEEEeCCCc----------------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCC
Confidence            3577888888765                4556666665 3478999999999999988888887663  5888888875


Q ss_pred             hh--HHHHhhcC--CCCceeEEEEcCC
Q 022597          197 DS--LKALILNG--EASSYDFAFVDAE  219 (294)
Q Consensus       197 ~~--l~~l~~~~--~~~~fD~vfiD~~  219 (294)
                      +.  ++.+.+.-  ..++.|.++..++
T Consensus        71 ~~~~~~~~~~~~~~~~g~iDilvnnAG   97 (255)
T d1fmca_          71 SEQELSALADFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEeeeCCc
Confidence            42  22221110  1367998887654

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=80.80  E-value=4.7  Score=33.36  Aligned_cols=83  Identities=16%  Similarity=0.170  Sum_probs=57.3

Q ss_pred             hCCCeEEEEccccccccccccccccCCCcHHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcchh
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA  196 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda~  196 (294)
                      ++++++|=.|.+.               | .+.++++.+ ..+++|+.++++++.++.+.+.++..|  .++.++..|..
T Consensus         6 L~GK~alITGas~---------------G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~   67 (259)
T d2ae2a_           6 LEGCTALVTGGSR---------------G-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLS   67 (259)
T ss_dssp             CTTCEEEEESCSS---------------H-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTT
T ss_pred             CCCCEEEEeCCCC---------------H-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCC
Confidence            3578899889875               4 555666655 347899999999999988888887765  36788888875


Q ss_pred             h--hHHHH----hhcCCCCceeEEEEcCC
Q 022597          197 D--SLKAL----ILNGEASSYDFAFVDAE  219 (294)
Q Consensus       197 ~--~l~~l----~~~~~~~~fD~vfiD~~  219 (294)
                      +  ..+.+    ..+. .++.|.++..++
T Consensus        68 ~~~~v~~~~~~~~~~~-~~~idilvnnAG   95 (259)
T d2ae2a_          68 SRSERQELMNTVANHF-HGKLNILVNNAG   95 (259)
T ss_dssp             CHHHHHHHHHHHHHHT-TTCCCEEEECCC
T ss_pred             CHHHHHHHHHHHHHHh-CCCceEEEECCc
Confidence            3  22222    1111 247999987654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=80.27  E-value=3.6  Score=33.44  Aligned_cols=81  Identities=15%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             hCCCeEEEEccccccccccccccccCCCc-HHHHHHHHHC-CCCcEEEEEeCChHHHHHHHHHHHHhCCCCcEEEEEcch
Q 022597          118 LGAQRCIEVGVYTVCVSSYSTSILSLFSG-YSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA  195 (294)
Q Consensus       118 ~~~~~vLEiG~g~~~~~~~~~~~~~~~aG-~~sl~la~~~-~~~~~v~~id~~~~~~~~A~~~~~~~gl~~~v~~~~gda  195 (294)
                      +.++++|=.|++.               | ..+.++++.+ ..+.+|+.++++++..+.+.+.....+-   ......|.
T Consensus         3 L~gK~~lITGass---------------~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   64 (258)
T d1qsga_           3 LSGKRILVTGVAS---------------KLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGS---DIVLQCDV   64 (258)
T ss_dssp             TTTCEEEECCCCS---------------TTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTC---CCEEECCT
T ss_pred             CCCCEEEEECCCC---------------chhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCC---cceeeccc
Confidence            5678899888754               2 2344444444 3478999999999888888777776553   33444443


Q ss_pred             hhh------HHHHhhcCCCCceeEEEEcC
Q 022597          196 ADS------LKALILNGEASSYDFAFVDA  218 (294)
Q Consensus       196 ~~~------l~~l~~~~~~~~fD~vfiD~  218 (294)
                      .+.      .....  ...+..|.++..+
T Consensus        65 ~~~~~~~~~~~~~~--~~~~~~d~~v~~a   91 (258)
T d1qsga_          65 AEDASIDTMFAELG--KVWPKFDGFVHSI   91 (258)
T ss_dssp             TCHHHHHHHHHHHH--TTCSSEEEEEECC
T ss_pred             chHHHHHHHHHHhh--hcccccceEEEee
Confidence            321      11221  1257888887553